Psyllid ID: psy226

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
Protein Sequence
MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQKKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEccccccEEEEEcccccccEEEEcccccEEEEEEcccccccccccccccccccccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccEEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEHHHcEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcc
Coil and Loop (DISEMBL)
MVLSQRQREELNKAVADYLLSNGYLSALEgfkkdadlpaEVEKKYSGLLEKKWTSVIRLQKKVIELESKLSEAEKEYvegaptrakrsptewiprapekfalsghrspviKVIFHPVFSLMASCSEDATIRLWDYETGEYERAlhghldsvqdiafdQSGKLLVSCSADMSLKLWDMSTYQCLKTmqghdhnvtgvaflpnsdfvlsaSRDKTIKMWEVATGYCVKTLTghrewvrqikvspdgtllascsndHTARVWSLATKETKaelrghdhtvecvawapgvasesiseaagrppgqgggpylatgsrdktiklwdvgsgSLLFTLIghdnwvrgvtfhpggkylvscgddktlrVWDTANKRNMKTLEAHSHfvtsldfhrahpyvvtgsvdKTVKVWECR
Flexible Loop (DISEMBL)
MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKysgllekkwtsvIRLQKKVIELEsklseaekeyvegaptrakrsptewipRAPEkfalsghrspVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESiseaagrppgqgggpYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVtsldfhrahpyvvtgsvdktvkvwecr
Low Complexity Region (SEG)
MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQKKVIelesklseaekeYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAgrppgqgggpYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR
Disordered region (IsUnstruct)
*************AVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQKKVIEL*********************************FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGV************************SRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE**
Disordered Region (DISOPRED)
*V*SQRQREELNKAVADYLLSNGYLSALEGFKK*******VEKKYSGLLEKKWTSVIRLQKKVI***********************SPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR
Disordered Region (DISEMBL)
********EELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQKKVIELESKLSE*****************TEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR
Disordered Region (DISPRO)
****QRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQKKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSxxxxxxxxxxxxxxxxxxxxxYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	406	2.2.26 [Sep-21-2011]
C3XVT5	406	Lissencephaly-1 homolog O	yes	N/A	1.0	1.0	0.682	1e-178
B7PS00	411	Lissencephaly-1 homolog O	N/A	N/A	0.995	0.982	0.690	1e-176
D3TLL6	411	Lissencephaly-1 homolog O	N/A	N/A	1.0	0.987	0.699	1e-176
Q803D2	410	Lissencephaly-1 homolog B	yes	N/A	1.0	0.990	0.697	1e-176
P63004	410	Platelet-activating facto	yes	N/A	1.0	0.990	0.697	1e-175
P63005	410	Platelet-activating facto	yes	N/A	1.0	0.990	0.697	1e-175
B0LSW3	410	Platelet-activating facto	N/A	N/A	1.0	0.990	0.697	1e-175
P43034	410	Platelet-activating facto	yes	N/A	1.0	0.990	0.697	1e-175
Q8HXX0	410	Platelet-activating facto	N/A	N/A	1.0	0.990	0.697	1e-175
P43033	410	Platelet-activating facto	yes	N/A	1.0	0.990	0.695	1e-175

>sp|C3XVT5|LIS1_BRAFL Lissencephaly-1 homolog OS=Branchiostoma floridae GN=BRAFLDRAFT_59218 PE=3 SV=1

 Score =  624 bits (1608), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 277/406 (68%), Positives = 341/406 (83%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
           MVLSQRQREELNKA+ADYL SNGY SALE F+K+A++P E+EKKY+GLLEKKWTSVIRLQ
Sbjct: 1   MVLSQRQREELNKAIADYLRSNGYESALEAFQKEAEMPGEIEKKYTGLLEKKWTSVIRLQ 60

Query: 61  KKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL 120
           KKV++LE+KL+EAEKE+  G P + +RSP+EWIPR P +++LSGHRSP+ +V+FHPV+S+
Sbjct: 61  KKVMDLEAKLAEAEKEFQSGGPNKKERSPSEWIPRPPARYSLSGHRSPITRVLFHPVYSV 120

Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY 180
           M S SEDATI++WDYETG++ER L GH D+VQD++FDQ GKLL SCSADM++KLWD  T+
Sbjct: 121 MVSASEDATIKIWDYETGDFERTLKGHTDAVQDVSFDQQGKLLASCSADMTIKLWDFQTF 180

Query: 181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKV 240
           + +KTM GHDHNV+ V F+PN DF++SASRDKTIKMWE+ATGYCVKT TGHREWVR ++V
Sbjct: 181 ENIKTMHGHDHNVSSVHFMPNGDFLISASRDKTIKMWELATGYCVKTFTGHREWVRTVRV 240

Query: 241 SPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPG 300
           + DG+LLASCSND T RVW +A KE KAELR H+H VEC+AWAP   +  +SE  G    
Sbjct: 241 NQDGSLLASCSNDQTVRVWVVANKECKAELREHEHVVECIAWAPESCNGHVSEVMGAEKK 300

Query: 301 QGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRV 360
              GP+L +GSRDKTIK+WD+ +G  + TL+GHDNWVRGV +HPGGKY++S  DDKT+RV
Sbjct: 301 GRSGPFLLSGSRDKTIKMWDISTGVCIMTLVGHDNWVRGVVWHPGGKYIISASDDKTIRV 360

Query: 361 WDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           WD  NKR  KTLEAH HF TS+DFHR+ PYV+TGSVD+TVKVWECR
Sbjct: 361 WDYKNKRCQKTLEAHQHFCTSIDFHRSAPYVITGSVDQTVKVWECR 406

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.
Branchiostoma floridae (taxid: 7739)

>sp|B7PS00|LIS1_IXOSC Lissencephaly-1 homolog OS=Ixodes scapularis GN=IscW_ISCW007420 PE=3 SV=2

 Score =  619 bits (1595), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 285/413 (69%), Positives = 344/413 (83%), Gaps = 9/413 (2%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
           MVLSQRQREELNKA+ADYL SNG++ ALE FKK+ D+P +++KKY+GLLEKKWTSVIRLQ
Sbjct: 1   MVLSQRQREELNKAIADYLASNGFMEALESFKKETDMPGDIDKKYAGLLEKKWTSVIRLQ 60

Query: 61  KKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL 120
           KKV++LE +L+EAEKEY+ G P+R KRSPTEWIPR PE+ AL GHR+P+ +V+FHPV+S+
Sbjct: 61  KKVMDLEGRLAEAEKEYISGTPSREKRSPTEWIPRPPERSALLGHRAPITRVLFHPVYSV 120

Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY 180
           + S SEDA+I++WDYETG++ER + GH DSVQDIAFD +G+ L SCSADM++KLWD  +Y
Sbjct: 121 VVSASEDASIKVWDYETGDFERTIKGHTDSVQDIAFDHTGQFLASCSADMTIKLWDFKSY 180

Query: 181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKV 240
           +CL+TM GHDHNV+ V FLP+ D V+S SRDK+IKMWEVATGYCV+T TGHR+WVR ++V
Sbjct: 181 ECLRTMHGHDHNVSSVCFLPSGDHVVSCSRDKSIKMWEVATGYCVRTFTGHRDWVRMVRV 240

Query: 241 SPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAG---R 297
           + DG+LLASCSND T RVW + TKE K ELR HDH VECVAWAP  A   +  AAG   R
Sbjct: 241 NSDGSLLASCSNDQTVRVWVVGTKECKLELREHDHVVECVAWAP--AHAQLCGAAGDSNR 298

Query: 298 PPGQGG----GPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCG 353
            PG GG    GP+L +GSRDKTIK+WDV +G  LFTL+GHDNWVRGV FHPGGKYL+S  
Sbjct: 299 RPGAGGAQGTGPFLVSGSRDKTIKVWDVSTGLALFTLVGHDNWVRGVKFHPGGKYLLSAS 358

Query: 354 DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           DDKTLRVW+ A++R  KTL+AHSHF TSLDFHR  PYVVTGSVD+TVKVWECR
Sbjct: 359 DDKTLRVWELAHQRCCKTLDAHSHFCTSLDFHRTAPYVVTGSVDQTVKVWECR 411

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.

Ixodes scapularis (taxid: 6945)

>sp|D3TLL6|LIS1_GLOMM Lissencephaly-1 homolog OS=Glossina morsitans morsitans PE=2 SV=1

 Score =  617 bits (1592), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 286/409 (69%), Positives = 339/409 (82%), Gaps = 3/409 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
           MVLSQRQREELN+A+ADYL SNGY SALE F+K+AD+  E E+K  GLLEKKWTSVIRLQ
Sbjct: 3   MVLSQRQREELNQAIADYLGSNGYSSALEAFRKEADISGEAERKIVGLLEKKWTSVIRLQ 62

Query: 61  KKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL 120
           KKV+ELE+KLSEAEKE +EGAP+RAKRSP EWIPR PEKF+LSGHR+ + +VIFHP +SL
Sbjct: 63  KKVMELEAKLSEAEKEVIEGAPSRAKRSPGEWIPRPPEKFSLSGHRASITRVIFHPTYSL 122

Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM-ST 179
           M S SEDA I++WD+ETGEYER+L GH  SVQDIAFD  GKLL SCSAD+S+KLWD   +
Sbjct: 123 MLSASEDAVIKIWDFETGEYERSLKGHTSSVQDIAFDSQGKLLASCSADLSIKLWDFQQS 182

Query: 180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK 239
           Y C+KTM GHDHNV+ VAF+P  D+VLSASRD+TIKMWEVATGYCVKT +GHREW+R ++
Sbjct: 183 YDCVKTMLGHDHNVSSVAFVPAGDYVLSASRDQTIKMWEVATGYCVKTYSGHREWIRMVR 242

Query: 240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAG--R 297
           V  DG + ASCS DH+ R+WS+ +++ KAELR HDHTVEC+AWAP +++  I+EAAG   
Sbjct: 243 VHMDGNIFASCSIDHSIRIWSINSRDCKAELRAHDHTVECIAWAPDISTTHINEAAGSDN 302

Query: 298 PPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT 357
             G   GP+LA+GSRDKTI++WDVG G  LF L GHDNWVR +TFHPGGKYLVS  DDKT
Sbjct: 303 KKGHHQGPFLASGSRDKTIRVWDVGVGLCLFVLTGHDNWVRELTFHPGGKYLVSASDDKT 362

Query: 358 LRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           +RVWD  NKR MKTL AH HF TS+DFH+  PYV++GSVD TVKVWECR
Sbjct: 363 IRVWDLRNKRFMKTLYAHQHFCTSVDFHKKLPYVISGSVDNTVKVWECR 411

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.

Glossina morsitans morsitans (taxid: 37546)

>sp|Q803D2|LIS1B_DANRE Lissencephaly-1 homolog B OS=Danio rerio GN=pafah1b1b PE=2 SV=3

 Score =  617 bits (1590), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 286/410 (69%), Positives = 339/410 (82%), Gaps = 4/410 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPA--EVEKKYSGLLEKKWTSVIR 58
           MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A+L    E++KK++GLLEKKWTSVIR
Sbjct: 1   MVLSQRQRDELNRAIADYLRSNGYEEAYSTFKKEAELDVNDELDKKFAGLLEKKWTSVIR 60

Query: 59  LQKKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
           LQKKV+ELESKL+EA++E   G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct: 61  LQKKVMELESKLNEAKEEITLGGPVGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query: 119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
           SLM S SEDATI++WDYE G++ER L GH DSVQDI+FDQ+GKLL SCSADM++KLWD  
Sbjct: 121 SLMVSASEDATIKVWDYEAGDFERTLKGHTDSVQDISFDQTGKLLASCSADMTIKLWDFQ 180

Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
            ++C++TM GHDHNV+ VA +PN D ++SASRDKT+KMWEVATGYCVKT TGHREWVR +
Sbjct: 181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTMKMWEVATGYCVKTFTGHREWVRMV 240

Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP 298
           + + DGTLLASCSND T RVW +ATKE KAELR H+H VEC++WAP  A  +ISEA G  
Sbjct: 241 RPNQDGTLLASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTISEATGSE 300

Query: 299 PGQGG--GPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
             + G  GP+L +GSRDKTIK+WD+ +G  L TL+GHDNWVRGV FHPGG+++VSC DDK
Sbjct: 301 NKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLFHPGGRFVVSCADDK 360

Query: 357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           TLR+WD  NKR MKTL AH HFVTSLDFH+A PYVVTGSVD+TVKVWECR
Sbjct: 361 TLRIWDYKNKRCMKTLSAHEHFVTSLDFHKASPYVVTGSVDQTVKVWECR 410

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration (By similarity). Involved in the positioning of nuclei in photoreceptor cells.

Danio rerio (taxid: 7955)

>sp|P63004|LIS1_RAT Platelet-activating factor acetylhydrolase IB subunit alpha OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2

 Score =  615 bits (1586), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 286/410 (69%), Positives = 337/410 (82%), Gaps = 4/410 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
           MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct: 1   MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60

Query: 59  LQKKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
           LQKKV+ELESKL+EA++E+  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct: 61  LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query: 119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
           S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD  
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180

Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
            ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct: 181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP 298
           + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA G  
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query: 299 PGQGG--GPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
             + G  GP+L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query: 357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

Required for proper activation of Rho GTPases and actin polymerization at the leading edge of locomoting cerebellar neurons and postmigratory hippocampal neurons in response to calcium influx triggered via NMDA receptors. Non-catalytic subunit of an acetylhydrolase complex which inactivates platelet-activating factor (PAF) by removing the acetyl group at the SN-2 position (By similarity). Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. Required during brain development for the proliferation of neuronal precursors and the migration of newly formed neurons from the ventricular/subventricular zone toward the cortical plate. Neuronal migration involves a process called nucleokinesis, whereby migrating cells extend an anterior process into which the nucleus subsequently translocates. During nucleokinesis dynein at the nuclear surface may translocate the nucleus towards the centrosome by exerting force on centrosomal microtubules. May also play a role in other forms of cell locomotion including the migration of fibroblasts during wound healing.

Rattus norvegicus (taxid: 10116)

>sp|P63005|LIS1_MOUSE Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus musculus GN=Pafah1b1 PE=1 SV=2

 Score =  615 bits (1586), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 286/410 (69%), Positives = 337/410 (82%), Gaps = 4/410 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
           MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct: 1   MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60

Query: 59  LQKKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
           LQKKV+ELESKL+EA++E+  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct: 61  LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query: 119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
           S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD  
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180

Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
            ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct: 181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP 298
           + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA G  
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query: 299 PGQGG--GPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
             + G  GP+L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query: 357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. Required during brain development for the proliferation of neuronal precursors and the migration of newly formed neurons from the ventricular/subventricular zone toward the cortical plate. Neuronal migration involves a process called nucleokinesis, whereby migrating cells extend an anterior process into which the nucleus subsequently translocates. During nucleokinesis dynein at the nuclear surface may translocate the nucleus towards the centrosome by exerting force on centrosomal microtubules. Also required for proper activation of Rho GTPases and actin polymerization at the leading edge of locomoting cerebellar neurons and postmigratory hippocampal neurons in response to calcium influx triggered via NMDA receptors. May also play a role in other forms of cell locomotion including the migration of fibroblasts during wound healing. Non-catalytic subunit of an acetylhydrolase complex which inactivates platelet-activating factor (PAF) by removing the acetyl group at the SN-2 position.

Mus musculus (taxid: 10090)

>sp|B0LSW3|LIS1_FELCA Platelet-activating factor acetylhydrolase IB subunit alpha OS=Felis catus GN=PAFAH1B1 PE=2 SV=1

 Score =  615 bits (1586), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 286/410 (69%), Positives = 337/410 (82%), Gaps = 4/410 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
           MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct: 1   MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60

Query: 59  LQKKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
           LQKKV+ELESKL+EA++E+  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct: 61  LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query: 119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
           S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD  
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180

Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
            ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct: 181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP 298
           + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA G  
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query: 299 PGQGG--GPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
             + G  GP+L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query: 357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. Required during brain development for the proliferation of neuronal precursors and the migration of newly formed neurons from the ventricular/subventricular zone toward the cortical plate. Neuronal migration involves a process called nucleokinesis, whereby migrating cells extend an anterior process into which the nucleus subsequently translocates. During nucleokinesis dynein at the nuclear surface may translocate the nucleus towards the centrosome by exerting force on centrosomal microtubules. Also required for proper activation of Rho GTPases and actin polymerization at the leading edge of locomoting cerebellar neurons and postmigratory hippocampal neurons in response to calcium influx triggered via NMDA receptors. May also play a role in other forms of cell locomotion including the migration of fibroblasts during wound healing. Non-catalytic subunit of an acetylhydrolase complex which inactivates platelet-activating factor (PAF) by removing the acetyl group at the SN-2 position.

Felis catus (taxid: 9685)

>sp|P43034|LIS1_HUMAN Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2

 Score =  615 bits (1585), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 286/410 (69%), Positives = 337/410 (82%), Gaps = 4/410 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
           MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct: 1   MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDVNEELDKKYAGLLEKKWTSVIR 60

Query: 59  LQKKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
           LQKKV+ELESKL+EA++E+  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct: 61  LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query: 119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
           S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD  
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180

Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
            ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct: 181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP 298
           + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA G  
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query: 299 PGQGG--GPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
             + G  GP+L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query: 357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

Required for proper activation of Rho GTPases and actin polymerization at the leading edge of locomoting cerebellar neurons and postmigratory hippocampal neurons in response to calcium influx triggered via NMDA receptors. Non-catalytic subunit of an acetylhydrolase complex which inactivates platelet-activating factor (PAF) by removing the acetyl group at the SN-2 position (By similarity). Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. Required during brain development for the proliferation of neuronal precursors and the migration of newly formed neurons from the ventricular/subventricular zone toward the cortical plate. Neuronal migration involves a process called nucleokinesis, whereby migrating cells extend an anterior process into which the nucleus subsequently translocates. During nucleokinesis dynein at the nuclear surface may translocate the nucleus towards the centrosome by exerting force on centrosomal microtubules. May also play a role in other forms of cell locomotion including the migration of fibroblasts during wound healing.

Homo sapiens (taxid: 9606)

>sp|Q8HXX0|LIS1_MACFA Platelet-activating factor acetylhydrolase IB subunit alpha OS=Macaca fascicularis GN=PAFAH1B1 PE=2 SV=3

 Score =  614 bits (1584), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 286/410 (69%), Positives = 337/410 (82%), Gaps = 4/410 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
           MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct: 1   MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60

Query: 59  LQKKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
           LQKKV+ELESKL+EA++E+  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct: 61  LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query: 119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
           S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD  
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLTSCSADMTIKLWDFQ 180

Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
            ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct: 181 GFECIRTMHGHDHNVSSVAIMPNGDHLVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP 298
           + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA G  
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query: 299 PGQGG--GPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
             + G  GP+L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query: 357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. Required during brain development for the proliferation of neuronal precursors and the migration of newly formed neurons from the ventricular/subventricular zone toward the cortical plate. Neuronal migration involves a process called nucleokinesis, whereby migrating cells extend an anterior process into which the nucleus subsequently translocates. During nucleokinesis dynein at the nuclear surface may translocate the nucleus towards the centrosome by exerting force on centrosomal microtubules. Also required for proper activation of Rho GTPases and actin polymerization at the leading edge of locomoting cerebellar neurons and postmigratory hippocampal neurons in response to calcium influx triggered via NMDA receptors. May also play a role in other forms of cell locomotion including the migration of fibroblasts during wound healing. Non-catalytic subunit of an acetylhydrolase complex which inactivates platelet-activating factor (PAF) by removing the acetyl group at the SN-2 position.

Macaca fascicularis (taxid: 9541)

>sp|P43033|LIS1_BOVIN Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos taurus GN=PAFAH1B1 PE=1 SV=2

 Score =  614 bits (1584), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 285/410 (69%), Positives = 338/410 (82%), Gaps = 4/410 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
           MVLSQRQR+ELN+A+ADYL SNGY +A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct: 1   MVLSQRQRDELNRAIADYLRSNGYEAAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60

Query: 59  LQKKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
           LQKKV+ELESKL+EA++E+  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct: 61  LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query: 119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
           S+M S SEDATI++WDYETG++ER L GH DSV+DI+FD SGKLL SCSADM++KLWD  
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQ 180

Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
            ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct: 181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP 298
           + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA G  
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query: 299 PGQGG--GPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
             + G  GP+L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query: 357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. Required during brain development for the proliferation of neuronal precursors and the migration of newly formed neurons from the ventricular/subventricular zone toward the cortical plate. Neuronal migration involves a process called nucleokinesis, whereby migrating cells extend an anterior process into which the nucleus subsequently translocates. During nucleokinesis dynein at the nuclear surface may translocate the nucleus towards the centrosome by exerting force on centrosomal microtubules. Also required for proper activation of Rho GTPases and actin polymerization at the leading edge of locomoting cerebellar neurons and postmigratory hippocampal neurons in response to calcium influx triggered via NMDA receptors. May also play a role in other forms of cell locomotion including the migration of fibroblasts during wound healing (By similarity). Non-catalytic subunit of an acetylhydrolase complex which inactivates platelet-activating factor (PAF) by removing the acetyl group at the SN-2 position. Required for pronuclear migration during fertilization.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
383854162	410	PREDICTED: lissencephaly-1 homolog [Mega	1.0	0.990	0.740	0.0
350401609	410	PREDICTED: lissencephaly-1 homolog [Bomb	1.0	0.990	0.737	0.0
340718378	410	PREDICTED: lissencephaly-1 homolog [Bomb	1.0	0.990	0.735	0.0
156544931	410	PREDICTED: lissencephaly-1 homolog [Naso	1.0	0.990	0.730	0.0
380017023	410	PREDICTED: lissencephaly-1 homolog [Apis	1.0	0.990	0.735	0.0
332019816	410	Lissencephaly-1-like protein [Acromyrmex	1.0	0.990	0.740	0.0
189240395	411	PREDICTED: similar to Lissencephaly-1 CG	1.0	0.987	0.713	1e-180
270011472	409	hypothetical protein TcasGA2_TC005496 [T	1.0	0.992	0.713	1e-180
242018145	410	platelet-activating factor acetylhydrola	0.997	0.987	0.701	1e-177
307209227	431	Lissencephaly-1-like protein [Harpegnath	0.972	0.916	0.730	1e-177

>gi|383854162|ref|XP_003702591.1| PREDICTED: lissencephaly-1 homolog [Megachile rotundata]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/408 (74%), Positives = 353/408 (86%), Gaps = 2/408 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
           MVLSQRQREELNKA+ADYL +NGY  ALE FKK+AD+P EVE+KY GLLEKKWTSVIRLQ
Sbjct: 3   MVLSQRQREELNKAIADYLSTNGYQDALEAFKKEADMPGEVERKYGGLLEKKWTSVIRLQ 62

Query: 61  KKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL 120
           KKV+ELESKLSEAEKE++EGAPTR+KRSP+EWIPR PEKF+L+GHR+P+ +VIFHPVFSL
Sbjct: 63  KKVMELESKLSEAEKEFIEGAPTRSKRSPSEWIPRPPEKFSLTGHRAPINRVIFHPVFSL 122

Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM-ST 179
           + S SEDATI++WD+E+GE+ER L GH DSVQD++FD SGKLLVSCSADMS+KLWD   +
Sbjct: 123 IVSASEDATIKVWDFESGEFERTLKGHTDSVQDVSFDVSGKLLVSCSADMSIKLWDFHQS 182

Query: 180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK 239
           + C+KTM GHDH+V+ VAF+P  DFV+SASRDKTIK+WEVATGYCVKTLTGHREWVR  +
Sbjct: 183 FACVKTMHGHDHSVSSVAFVPQGDFVVSASRDKTIKIWEVATGYCVKTLTGHREWVRMAR 242

Query: 240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP- 298
           VSP G L+ASCSND T RVW +ATKETK ELR HDH VEC+ WAP  A  SI+ AAG   
Sbjct: 243 VSPCGELIASCSNDQTVRVWHVATKETKVELRDHDHVVECITWAPDSARASINAAAGADN 302

Query: 299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTL 358
            G   GP+LA+GSRDK I++WDVG+G  LFTL+GHDNWVRG+ FHPGGK++VS  DDKTL
Sbjct: 303 KGAHEGPFLASGSRDKVIRVWDVGAGVCLFTLLGHDNWVRGIVFHPGGKFIVSASDDKTL 362

Query: 359 RVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           RVWDT NKR MKTLEAH HF TS+DFH++HPYVVTGSVD+TVK+WECR
Sbjct: 363 RVWDTRNKRAMKTLEAHVHFCTSVDFHKSHPYVVTGSVDQTVKIWECR 410

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401609|ref|XP_003486207.1| PREDICTED: lissencephaly-1 homolog [Bombus impatiens]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/408 (73%), Positives = 354/408 (86%), Gaps = 2/408 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
           MVLSQRQREELNKA+ADYL +NGY  ALE FKK+AD+P EVE+KY GLLEKKWTSVIRLQ
Sbjct: 3   MVLSQRQREELNKAIADYLSTNGYQDALEAFKKEADMPGEVERKYGGLLEKKWTSVIRLQ 62

Query: 61  KKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL 120
           KKV+ELESKLSEAEKE++EGAPTR+KRSP+EWIPR PEK++L+GHR+P+ +VIFHPVFSL
Sbjct: 63  KKVMELESKLSEAEKEFIEGAPTRSKRSPSEWIPRPPEKYSLTGHRAPINRVIFHPVFSL 122

Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM-ST 179
           + S SEDATI++WD+E+GE+ER L GH DSVQD++FD SGKLLVSCSADMS+KLWD   +
Sbjct: 123 IVSASEDATIKVWDFESGEFERTLKGHTDSVQDVSFDVSGKLLVSCSADMSIKLWDFHQS 182

Query: 180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK 239
           + C+KTM GHDH+V+ VAF+P  DFV+SASRDKTIK+WEVATGYCVKTLTGHREWVR  +
Sbjct: 183 FACVKTMHGHDHSVSSVAFVPQGDFVVSASRDKTIKIWEVATGYCVKTLTGHREWVRMAR 242

Query: 240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP- 298
           VSP G L+ASCSND T RVW +ATKETK ELR H+H VEC+AWAP  A  SI+ AAG   
Sbjct: 243 VSPCGELIASCSNDQTVRVWHVATKETKVELRDHEHVVECIAWAPDSARASINAAAGADN 302

Query: 299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTL 358
            G   GP+LA+GSRDK I++WDVG+G  LFTL+GHDNWVRG+ FHPGGK++VS  DDKTL
Sbjct: 303 KGAHEGPFLASGSRDKVIRIWDVGAGVCLFTLLGHDNWVRGIVFHPGGKFIVSASDDKTL 362

Query: 359 RVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           RVWDT NKR MKTLEAH HF TS+DFH++HPYVVTGSVD+TVK+WECR
Sbjct: 363 RVWDTRNKRVMKTLEAHVHFCTSVDFHKSHPYVVTGSVDQTVKIWECR 410

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718378|ref|XP_003397645.1| PREDICTED: lissencephaly-1 homolog [Bombus terrestris]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/408 (73%), Positives = 354/408 (86%), Gaps = 2/408 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
           MVLSQRQREELNKA+ADYL +NGY  ALE FKK+AD+P EVE+KY GLLEKKWTSVIRLQ
Sbjct: 3   MVLSQRQREELNKAIADYLSTNGYQDALEAFKKEADMPGEVERKYGGLLEKKWTSVIRLQ 62

Query: 61  KKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL 120
           KKV+ELESKLSEAEKE++EGAPTR+KRSP+EWIPR PEK++L+GHR+P+ +VIFHPVFSL
Sbjct: 63  KKVMELESKLSEAEKEFIEGAPTRSKRSPSEWIPRPPEKYSLTGHRAPINRVIFHPVFSL 122

Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM-ST 179
           + S SEDATI++WD+E+GE+ER L GH DSVQD++FD SGKLLVSCSADMS+KLWD   +
Sbjct: 123 IVSASEDATIKVWDFESGEFERTLKGHTDSVQDVSFDVSGKLLVSCSADMSIKLWDFHQS 182

Query: 180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK 239
           + C+KTM GHDH+V+ VAF+P  DFV+SASRDKTIK+WEVATGYCVKTL+GHREWVR  +
Sbjct: 183 FACVKTMHGHDHSVSSVAFVPQGDFVVSASRDKTIKIWEVATGYCVKTLSGHREWVRMAR 242

Query: 240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP- 298
           VSP G L+ASCSND T RVW +ATKETK ELR H+H VEC+AWAP  A  SI+ AAG   
Sbjct: 243 VSPCGELIASCSNDQTVRVWHVATKETKVELRDHEHVVECIAWAPDSARASINAAAGADN 302

Query: 299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTL 358
            G   GP+LA+GSRDK I++WDVG+G  LFTL+GHDNWVRG+ FHPGGK++VS  DDKTL
Sbjct: 303 KGAHEGPFLASGSRDKVIRIWDVGAGVCLFTLMGHDNWVRGIVFHPGGKFIVSASDDKTL 362

Query: 359 RVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           RVWDT NKR MKTLEAH HF TS+DFH++HPYVVTGSVD+TVK+WECR
Sbjct: 363 RVWDTRNKRVMKTLEAHVHFCTSVDFHKSHPYVVTGSVDQTVKIWECR 410

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544931|ref|XP_001603881.1| PREDICTED: lissencephaly-1 homolog [Nasonia vitripennis]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/408 (73%), Positives = 350/408 (85%), Gaps = 2/408 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
           MVLSQRQREELNKA+ADYL +NGY  ALE FKK+AD+P EVE+KY GLLEKKWTSVIRLQ
Sbjct: 3   MVLSQRQREELNKAIADYLSANGYQDALEAFKKEADMPGEVERKYGGLLEKKWTSVIRLQ 62

Query: 61  KKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL 120
           KKV+ELESKLSEAEKE++EGAPTR KRSP++WIPR PEKF L+GHR+ + +V+FHPVFSL
Sbjct: 63  KKVMELESKLSEAEKEFIEGAPTRGKRSPSDWIPRPPEKFCLTGHRATINRVVFHPVFSL 122

Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM-ST 179
           + + SEDATI++WD+ETGE+ER L GH DSVQDIAFD SGKLLVSCS+DM++KLWD   +
Sbjct: 123 VVTASEDATIKVWDFETGEFERTLKGHTDSVQDIAFDTSGKLLVSCSSDMTIKLWDFQQS 182

Query: 180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK 239
           + C+KTM GHDHNV+ V F+P  DF++SASRDKTIK+WEVATGYCVKTLTGHREWVR  +
Sbjct: 183 FSCIKTMHGHDHNVSSVTFVPQGDFIVSASRDKTIKIWEVATGYCVKTLTGHREWVRMAR 242

Query: 240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP- 298
           +SP G L+ASCSND T RVW +A+KETK ELR HDH VEC+AWAP  A  +I+ AAG   
Sbjct: 243 ISPCGELIASCSNDQTVRVWHIASKETKVELRDHDHVVECIAWAPDCARATINAAAGADN 302

Query: 299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTL 358
            G   GP+LA+GSRDKTI++WDVGSG  LFTL+GHDNWVRG+ FHP GK++VS  DDKTL
Sbjct: 303 KGAHEGPFLASGSRDKTIRVWDVGSGVCLFTLLGHDNWVRGIVFHPSGKFIVSASDDKTL 362

Query: 359 RVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           RVWDT NKRNMKTLEAH+HF TS+DFHR HPYVVTGSVD+T K+WECR
Sbjct: 363 RVWDTRNKRNMKTLEAHAHFCTSVDFHRNHPYVVTGSVDQTAKIWECR 410

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017023|ref|XP_003692466.1| PREDICTED: lissencephaly-1 homolog [Apis florea]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/408 (73%), Positives = 353/408 (86%), Gaps = 2/408 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
           MVLSQRQREELNKA+ADYL +NGY  ALE FKK+AD+P EVE+KY GLLEKKWTSVIRLQ
Sbjct: 3   MVLSQRQREELNKAIADYLSTNGYQDALEAFKKEADMPGEVERKYGGLLEKKWTSVIRLQ 62

Query: 61  KKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL 120
           KKV+ELESKLSEAEKE++EGAPTR+KRSP+EWIPR PEK++L+GHR+P+ +VIFHPVFSL
Sbjct: 63  KKVMELESKLSEAEKEFIEGAPTRSKRSPSEWIPRPPEKYSLTGHRAPINRVIFHPVFSL 122

Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM-ST 179
           + S SEDATI++WD+E+GE+ER L GH DSVQD++FD SGKLLVSCSADMS+KLWD   +
Sbjct: 123 IVSASEDATIKVWDFESGEFERTLKGHTDSVQDVSFDVSGKLLVSCSADMSIKLWDFHQS 182

Query: 180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK 239
           + C+KTM GHDH+V+ VAF+P  DFV+SASRDKTIK+WEVATGYCVKTLTGHREWVR  +
Sbjct: 183 FACVKTMHGHDHSVSSVAFVPQGDFVVSASRDKTIKIWEVATGYCVKTLTGHREWVRMAR 242

Query: 240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP- 298
           VSP G L+ASCSND T RVW +ATKETK ELR H+H VEC+AWAP  A  SI+ AAG   
Sbjct: 243 VSPCGELIASCSNDQTVRVWHVATKETKVELRDHEHVVECIAWAPDSARASINAAAGADN 302

Query: 299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTL 358
            G   GP+LA+GSRDK I++WDVG+G  LF L+GHDNWVRG+ FHPGGK++VS  DDKTL
Sbjct: 303 KGAHEGPFLASGSRDKVIRVWDVGAGVCLFALLGHDNWVRGIVFHPGGKFIVSASDDKTL 362

Query: 359 RVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           RVWDT NKR MKTLEAH HF TS+DFH++HPYVVTGSVD+TVK+WECR
Sbjct: 363 RVWDTRNKRVMKTLEAHVHFCTSVDFHKSHPYVVTGSVDQTVKIWECR 410

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019816|gb|EGI60277.1| Lissencephaly-1-like protein [Acromyrmex echinatior]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/408 (74%), Positives = 348/408 (85%), Gaps = 2/408 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
           MVLSQRQREELNKA+ADYL +NGY  ALE FKK+AD+P EVE+KY GLLEKKWTSVIRLQ
Sbjct: 3   MVLSQRQREELNKAIADYLSTNGYQDALEAFKKEADMPGEVERKYGGLLEKKWTSVIRLQ 62

Query: 61  KKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL 120
           KKV+ELESKLSEAEKE++EGAPTR KRSP+EWIPR PEKF+LSGHR+P+ +VIFHPVFSL
Sbjct: 63  KKVMELESKLSEAEKEFIEGAPTRGKRSPSEWIPRPPEKFSLSGHRAPINRVIFHPVFSL 122

Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM-ST 179
           + S SEDATI++WD+E+G++ER L GH DSVQDIAFD SGKLL SCSADMS+KLWD   +
Sbjct: 123 VVSASEDATIKVWDFESGDFERTLKGHTDSVQDIAFDTSGKLLASCSADMSIKLWDFHQS 182

Query: 180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK 239
           + C+KTM GHDHNV  VAF+P  DFV+SASRDKTIK+WEVATGYCVKTLTGHREWVR  +
Sbjct: 183 FACVKTMHGHDHNVNSVAFVPQGDFVVSASRDKTIKIWEVATGYCVKTLTGHREWVRMAR 242

Query: 240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP- 298
           VSP G L+ASCSND T RVW +ATKETK E R H+H VEC+AWAP  A  SI+ AAG   
Sbjct: 243 VSPCGELIASCSNDQTVRVWHIATKETKVEFREHEHVVECIAWAPENARASINAAAGADN 302

Query: 299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTL 358
            G   GP+LA+GSRDK I++WDVG+G  LFTL+GHDNWVR + FHPGGK++VS  DDKTL
Sbjct: 303 KGAHEGPFLASGSRDKMIRVWDVGAGVCLFTLVGHDNWVRCIVFHPGGKFIVSASDDKTL 362

Query: 359 RVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           RVWDT NKR MKTLEAH HF TS+DFH+ HPYVVTGSVD+TVK+WECR
Sbjct: 363 RVWDTRNKRVMKTLEAHLHFCTSVDFHKNHPYVVTGSVDQTVKIWECR 410

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240395|ref|XP_967842.2| PREDICTED: similar to Lissencephaly-1 CG8440-PA [Tribolium castaneum]

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 292/409 (71%), Positives = 349/409 (85%), Gaps = 3/409 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
           MVLSQRQREELNKA+ADYL SNGY++ALE FKK+ D+P E+E+K+ GLLEKKWTSVIRLQ
Sbjct: 3   MVLSQRQREELNKAIADYLGSNGYMNALEAFKKETDMPGELERKFGGLLEKKWTSVIRLQ 62

Query: 61  KKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL 120
           KKV+ELESKL EAEKEY+EGAPTR KRSP EWIPR PEK+AL+GHR+PV +VIFHP+FSL
Sbjct: 63  KKVMELESKLHEAEKEYIEGAPTRGKRSPAEWIPRPPEKYALTGHRAPVTRVIFHPLFSL 122

Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM-ST 179
             S SEDATI++WD+ETGEYER L GH D+VQD+AFD +GKLLVSCSADMS+KLWD   +
Sbjct: 123 FVSTSEDATIKVWDFETGEYERTLKGHSDAVQDVAFDATGKLLVSCSADMSIKLWDFQQS 182

Query: 180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK 239
           Y+C++TM GHDHN++ VAF+P  DFV+S+SRDKTIKMWEV+TGYCVKT TGH++WVR ++
Sbjct: 183 YECIRTMLGHDHNISSVAFMPAGDFVVSSSRDKTIKMWEVSTGYCVKTFTGHKDWVRVVR 242

Query: 240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPP 299
            SPDG LLASCSND T R+W + TKE +AELR H+H VE VAWAP  A+ +I+EAAG   
Sbjct: 243 PSPDGQLLASCSNDQTIRIWQVYTKECRAELRAHEHVVEFVAWAPDSAANAINEAAGVDN 302

Query: 300 GQGG--GPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT 357
            +G   GP+LA+ SRDKTI++WDVG+G  LF LIGHDNWVRG  FHPGGK+LVS  DDKT
Sbjct: 303 KKGAHMGPFLASCSRDKTIRIWDVGAGVALFVLIGHDNWVRGAVFHPGGKFLVSVSDDKT 362

Query: 358 LRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           LRVWD  NKR +KTL+AH HF TS+DFH++HPYV++GSVD TVKVWECR
Sbjct: 363 LRVWDLRNKRCLKTLDAHKHFCTSVDFHKSHPYVISGSVDLTVKVWECR 411

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011472|gb|EFA07920.1| hypothetical protein TcasGA2_TC005496 [Tribolium castaneum]

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 292/409 (71%), Positives = 349/409 (85%), Gaps = 3/409 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
           MVLSQRQREELNKA+ADYL SNGY++ALE FKK+ D+P E+E+K+ GLLEKKWTSVIRLQ
Sbjct: 1   MVLSQRQREELNKAIADYLGSNGYMNALEAFKKETDMPGELERKFGGLLEKKWTSVIRLQ 60

Query: 61  KKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL 120
           KKV+ELESKL EAEKEY+EGAPTR KRSP EWIPR PEK+AL+GHR+PV +VIFHP+FSL
Sbjct: 61  KKVMELESKLHEAEKEYIEGAPTRGKRSPAEWIPRPPEKYALTGHRAPVTRVIFHPLFSL 120

Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM-ST 179
             S SEDATI++WD+ETGEYER L GH D+VQD+AFD +GKLLVSCSADMS+KLWD   +
Sbjct: 121 FVSTSEDATIKVWDFETGEYERTLKGHSDAVQDVAFDATGKLLVSCSADMSIKLWDFQQS 180

Query: 180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK 239
           Y+C++TM GHDHN++ VAF+P  DFV+S+SRDKTIKMWEV+TGYCVKT TGH++WVR ++
Sbjct: 181 YECIRTMLGHDHNISSVAFMPAGDFVVSSSRDKTIKMWEVSTGYCVKTFTGHKDWVRVVR 240

Query: 240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPP 299
            SPDG LLASCSND T R+W + TKE +AELR H+H VE VAWAP  A+ +I+EAAG   
Sbjct: 241 PSPDGQLLASCSNDQTIRIWQVYTKECRAELRAHEHVVEFVAWAPDSAANAINEAAGVDN 300

Query: 300 GQGG--GPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT 357
            +G   GP+LA+ SRDKTI++WDVG+G  LF LIGHDNWVRG  FHPGGK+LVS  DDKT
Sbjct: 301 KKGAHMGPFLASCSRDKTIRIWDVGAGVALFVLIGHDNWVRGAVFHPGGKFLVSVSDDKT 360

Query: 358 LRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           LRVWD  NKR +KTL+AH HF TS+DFH++HPYV++GSVD TVKVWECR
Sbjct: 361 LRVWDLRNKRCLKTLDAHKHFCTSVDFHKSHPYVISGSVDLTVKVWECR 409

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018145|ref|XP_002429541.1| platelet-activating factor acetylhydrolase isoform 1B alpha subunit, putative [Pediculus humanus corporis] gi|212514489|gb|EEB16803.1| platelet-activating factor acetylhydrolase isoform 1B alpha subunit, putative [Pediculus humanus corporis]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 287/409 (70%), Positives = 340/409 (83%), Gaps = 4/409 (0%)

Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
           MVLSQRQREELNKA+ADYL SNGY+ AL+ FKKDAD+P EVE KY GLLEKKWTSVIRLQ
Sbjct: 3   MVLSQRQREELNKAIADYLSSNGYMDALQAFKKDADMPGEVEHKYGGLLEKKWTSVIRLQ 62

Query: 61  KKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL 120
           KKV+ELESKLS AEKE +E APTR KR+P+EWIPR PEKF LSGHR P+ +VIFHPVFSL
Sbjct: 63  KKVMELESKLSAAEKEIIE-APTRGKRTPSEWIPRPPEKFCLSGHRFPLTRVIFHPVFSL 121

Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST- 179
           M S SEDAT+++WDYETGEYER L GH+++VQDIAFDQ+GKLLVSCSAD+S+K+W+    
Sbjct: 122 MVSASEDATMKVWDYETGEYERVLKGHMNAVQDIAFDQTGKLLVSCSADLSIKIWNFQQD 181

Query: 180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK 239
           Y+C+KT+ GHDHNV+ VAF+P  D+++S SRDKTIKMWEVA+GYC+KT TGHREWVR ++
Sbjct: 182 YECIKTLHGHDHNVSSVAFMPGGDYIVSGSRDKTIKMWEVASGYCIKTFTGHREWVRMVR 241

Query: 240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPP 299
            SPDGT +ASCSND T R+W  +TKE K ELR HDH VEC+AWAP  A+ +I+EAAG   
Sbjct: 242 PSPDGTYIASCSNDQTIRIWIASTKECKLELREHDHVVECIAWAPESATSAINEAAGSDN 301

Query: 300 GQGG--GPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT 357
            +G   GP+L +GSRDKT+K+WD+ +G  LFT +GHDNWVRGV FHPGGKY++S  DDKT
Sbjct: 302 RRGAQKGPFLVSGSRDKTLKVWDISTGVCLFTFVGHDNWVRGVVFHPGGKYIISASDDKT 361

Query: 358 LRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           LRVWD  N R  K LEAH HF T LDFH++ PY +TGSVD TVKVWECR
Sbjct: 362 LRVWDIRNIRCFKKLEAHPHFCTCLDFHKSQPYAITGSVDNTVKVWECR 410

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209227|gb|EFN86334.1| Lissencephaly-1-like protein [Harpegnathos saltator]

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 290/397 (73%), Positives = 338/397 (85%), Gaps = 2/397 (0%)

Query: 12  NKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQKKVIELESKLS 71
           NKA+ADYL +NGY  ALE FKK+AD+P EVE+KY GLLEKKWTSVIRLQKKV+ELESKLS
Sbjct: 35  NKAIADYLSTNGYQDALEAFKKEADMPGEVERKYGGLLEKKWTSVIRLQKKVMELESKLS 94

Query: 72  EAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIR 131
           EAEKE++EGAPTR KRSP+EWIPR PEK++L+GHR+P+ +VIFHPVFSL+ S SEDATI+
Sbjct: 95  EAEKEFIEGAPTRGKRSPSEWIPRPPEKYSLTGHRAPINRVIFHPVFSLIVSASEDATIK 154

Query: 132 LWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM-STYQCLKTMQGHD 190
           +WD+E+GE+ER L GH DSVQD+AFD SGKLLVSCSADMS+KLWD   ++ C+KTM GHD
Sbjct: 155 VWDFESGEFERTLKGHTDSVQDVAFDVSGKLLVSCSADMSIKLWDFHQSFACVKTMHGHD 214

Query: 191 HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASC 250
           HNV  VAF+P  DFV+SASRDKTIK+WEVATGYCVKTL GHREWVR  +VSP G L+ASC
Sbjct: 215 HNVNSVAFVPQGDFVVSASRDKTIKIWEVATGYCVKTLVGHREWVRMARVSPCGELIASC 274

Query: 251 SNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP-PGQGGGPYLAT 309
           SND T RVW +ATKETK E R HDH VEC+AWAP  A  SI+ AAG    G   GP+LA+
Sbjct: 275 SNDQTVRVWHVATKETKVEFRDHDHVVECIAWAPESARASINAAAGADNKGAHEGPFLAS 334

Query: 310 GSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNM 369
           GSRDK I++WDVG+G  LFTL+GHDNWVR + FHPGGK++VS  DDKTLRVWDT NKR M
Sbjct: 335 GSRDKMIRVWDVGAGVCLFTLVGHDNWVRCIVFHPGGKFIVSASDDKTLRVWDTRNKRVM 394

Query: 370 KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           KTLEAH HF TS+DFH++HPYVVTGSVD+TVK+WECR
Sbjct: 395 KTLEAHVHFCTSVDFHKSHPYVVTGSVDQTVKIWECR 431

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	406
FB|FBgn0015754	411	Lis-1 "Lissencephaly-1" [Droso	1.0	0.987	0.667	4.4e-155
ZFIN|ZDB-GENE-040116-3	410	pafah1b1b "platelet-activating	1.0	0.990	0.665	8.2e-154
UNIPROTKB|A5D7P3	410	PAFAH1B1 "Platelet-activating	1.0	0.990	0.665	2.2e-153
UNIPROTKB|E2QY31	410	PAFAH1B1 "Uncharacterized prot	1.0	0.990	0.665	2.2e-153
UNIPROTKB|P43034	410	PAFAH1B1 "Platelet-activating	1.0	0.990	0.665	2.2e-153
UNIPROTKB|F2Z521	410	PAFAH1B1 "Platelet-activating	1.0	0.990	0.665	2.2e-153
MGI|MGI:109520	410	Pafah1b1 "platelet-activating	1.0	0.990	0.665	2.2e-153
RGD|620331	410	Pafah1b1 "platelet-activating	1.0	0.990	0.665	2.2e-153
UNIPROTKB|P63004	410	Pafah1b1 "Platelet-activating	1.0	0.990	0.665	2.2e-153
UNIPROTKB|P43033	410	PAFAH1B1 "Platelet-activating	1.0	0.990	0.663	3.6e-153

FB|FBgn0015754 Lis-1 "Lissencephaly-1" [Drosophila melanogaster (taxid:7227)]

 Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
 Identities = 273/409 (66%), Positives = 327/409 (79%)

Query:     1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQ 60
             MVLSQRQREELN+A+ADYL SNGY  +LE F+K+ADL  EVEKK+ GLLEKKWTSVIRLQ
Sbjct:     3 MVLSQRQREELNQAIADYLGSNGYADSLETFRKEADLSTEVEKKFGGLLEKKWTSVIRLQ 62

Query:    61 KKVIXXXXXXXXXXXXYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL 120
             KKV+             +EGAPT+ KR+P EWIPR PEKF+L+GHR+ + +VIFHP+F+L
Sbjct:    63 KKVMELEAKLTEAEKEVIEGAPTKNKRTPGEWIPRPPEKFSLTGHRASITRVIFHPIFAL 122

Query:   121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS-T 179
             M S SEDATIR+WD+ETGEYER+L GH DSVQD+AFD  GKLL SCSAD+S+KLWD   +
Sbjct:   123 MVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQS 182

Query:   180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK 239
             Y+C+KTM GHDHNV+ VAF+P  D+VLSASRD+TIKMWEVATGYCVKT TGHREWVR ++
Sbjct:   183 YECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVR 242

Query:   240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXX 299
             V  +G++ A+CSND T RVW   +K+ K ELR H+HTVEC+AWAP  A+ +I+EAA    
Sbjct:   243 VHIEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADN 302

Query:   300 XXXXXX--YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT 357
                     +LA+GSRDKTI++WDV  G  L TL GHDNWVRG+ FHPGGKYLVS  DDKT
Sbjct:   303 KKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGGKYLVSASDDKT 362

Query:   358 LRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
             +RVWD  NKR MKTL AH HF TS+DFH+AHPYV++GSVD+TVKVWECR
Sbjct:   363 IRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGSVDQTVKVWECR 411

GO:0030706 "germarium-derived oocyte differentiation" evidence=IMP

GO:0048135 "female germ-line cyst formation" evidence=IMP

GO:0045478 "fusome organization" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0050790 "regulation of catalytic activity" evidence=ISS

GO:0030234 "enzyme regulator activity" evidence=ISS

GO:0008104 "protein localization" evidence=IGI;IMP

GO:0007294 "germarium-derived oocyte fate determination" evidence=IMP

GO:0051647 "nucleus localization" evidence=IMP

GO:0030716 "oocyte fate determination" evidence=IGI

GO:0005938 "cell cortex" evidence=IDA

GO:0007303 "cytoplasmic transport, nurse cell to oocyte" evidence=IMP

GO:0045502 "dynein binding" evidence=ISS

GO:0007312 "oocyte nucleus migration involved in oocyte dorsal/ventral axis specification" evidence=IMP

GO:0030381 "chorion-containing eggshell pattern formation" evidence=IMP

GO:0030473 "nuclear migration along microtubule" evidence=IGI

GO:0008298 "intracellular mRNA localization" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0030425 "dendrite" evidence=IDA

GO:0007405 "neuroblast proliferation" evidence=IMP

GO:0008088 "axon cargo transport" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030286 "dynein complex" evidence=ISS;IDA

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0034501 "protein localization to kinetochore" evidence=IMP

GO:0005869 "dynactin complex" evidence=IDA

GO:0051225 "spindle assembly" evidence=IMP

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0051299 "centrosome separation" evidence=IMP

GO:0007093 "mitotic cell cycle checkpoint" evidence=IGI;IMP

GO:0051383 "kinetochore organization" evidence=IMP

GO:0005828 "kinetochore microtubule" evidence=IDA

GO:0031616 "spindle pole centrosome" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:2001019 "positive regulation of retrograde axon cargo transport" evidence=IMP

GO:0048814 "regulation of dendrite morphogenesis" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IDA

GO:0030510 "regulation of BMP signaling pathway" evidence=IDA

GO:0046716 "muscle cell homeostasis" evidence=IGI;IMP

GO:0072499 "photoreceptor cell axon guidance" evidence=IMP

GO:0042052 "rhabdomere development" evidence=IMP

GO:0005813 "centrosome" evidence=IDA

GO:0051642 "centrosome localization" evidence=IMP

GO:0000922 "spindle pole" evidence=IDA

GO:0007283 "spermatogenesis" evidence=IMP

ZFIN|ZDB-GENE-040116-3 pafah1b1b "platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit b" [Danio rerio (taxid:7955)]

 Score = 1500 (533.1 bits), Expect = 8.2e-154, P = 8.2e-154
 Identities = 273/410 (66%), Positives = 322/410 (78%)

Query:     1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPA--EVEKKYSGLLEKKWTSVIR 58
             MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A+L    E++KK++GLLEKKWTSVIR
Sbjct:     1 MVLSQRQRDELNRAIADYLRSNGYEEAYSTFKKEAELDVNDELDKKFAGLLEKKWTSVIR 60

Query:    59 LQKKVIXXXXXXXXXXXXYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
             LQKKV+               G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct:    61 LQKKVMELESKLNEAKEEITLGGPVGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query:   119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
             SLM S SEDATI++WDYE G++ER L GH DSVQDI+FDQ+GKLL SCSADM++KLWD  
Sbjct:   121 SLMVSASEDATIKVWDYEAGDFERTLKGHTDSVQDISFDQTGKLLASCSADMTIKLWDFQ 180

Query:   179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
              ++C++TM GHDHNV+ VA +PN D ++SASRDKT+KMWEVATGYCVKT TGHREWVR +
Sbjct:   181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTMKMWEVATGYCVKTFTGHREWVRMV 240

Query:   239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
             + + DGTLLASCSND T RVW +ATKE KAELR H+H VEC++WAP  A  +ISEA    
Sbjct:   241 RPNQDGTLLASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTISEATGSE 300

Query:   299 XXXXXXX--YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
                      +L +GSRDKTIK+WD+ +G  L TL+GHDNWVRGV FHPGG+++VSC DDK
Sbjct:   301 NKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLFHPGGRFVVSCADDK 360

Query:   357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
             TLR+WD  NKR MKTL AH HFVTSLDFH+A PYVVTGSVD+TVKVWECR
Sbjct:   361 TLRIWDYKNKRCMKTLSAHEHFVTSLDFHKASPYVVTGSVDQTVKVWECR 410

GO:0040023 "establishment of nucleus localization" evidence=IMP

GO:0045494 "photoreceptor cell maintenance" evidence=IMP

GO:0045176 "apical protein localization" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IGI;IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006810 "transport" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB|A5D7P3 PAFAH1B1 "Platelet-activating factor acetylhydrolase IB subunit alpha" [Bos taurus (taxid:9913)]

 Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
 Identities = 273/410 (66%), Positives = 320/410 (78%)

Query:     1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
             MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct:     1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60

Query:    59 LQKKVIXXXXXXXXXXXXYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
             LQKKV+            +  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct:    61 LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query:   119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
             S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD  
Sbjct:   121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180

Query:   179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
              ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct:   181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query:   239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
             + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA    
Sbjct:   241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query:   299 XXXXXXX--YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
                      +L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct:   301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query:   357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
             TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct:   361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0051081 "nuclear envelope disassembly" evidence=IEA

GO:0050885 "neuromuscular process controlling balance" evidence=IEA

GO:0048854 "brain morphogenesis" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0047496 "vesicle transport along microtubule" evidence=IEA

GO:0046329 "negative regulation of JNK cascade" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0036035 "osteoclast development" evidence=IEA

GO:0032319 "regulation of Rho GTPase activity" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0031023 "microtubule organizing center organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0021819 "layer formation in cerebral cortex" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021540 "corpus callosum morphogenesis" evidence=IEA

GO:0009306 "protein secretion" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0008090 "retrograde axon cargo transport" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007611 "learning or memory" evidence=IEA

GO:0007405 "neuroblast proliferation" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001961 "positive regulation of cytokine-mediated signaling pathway" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001675 "acrosome assembly" evidence=IEA

GO:0001667 "ameboidal cell migration" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000235 "astral microtubule" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

UNIPROTKB|E2QY31 PAFAH1B1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
 Identities = 273/410 (66%), Positives = 320/410 (78%)

Query:     1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
             MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct:     1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60

Query:    59 LQKKVIXXXXXXXXXXXXYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
             LQKKV+            +  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct:    61 LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query:   119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
             S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD  
Sbjct:   121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180

Query:   179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
              ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct:   181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query:   239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
             + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA    
Sbjct:   241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query:   299 XXXXXXX--YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
                      +L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct:   301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query:   357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
             TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct:   361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P43034 PAFAH1B1 "Platelet-activating factor acetylhydrolase IB subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
 Identities = 273/410 (66%), Positives = 320/410 (78%)

Query:     1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPA--EVEKKYSGLLEKKWTSVIR 58
             MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A+L    E++KKY+GLLEKKWTSVIR
Sbjct:     1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDVNEELDKKYAGLLEKKWTSVIR 60

Query:    59 LQKKVIXXXXXXXXXXXXYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
             LQKKV+            +  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct:    61 LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query:   119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
             S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD  
Sbjct:   121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180

Query:   179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
              ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct:   181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query:   239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
             + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA    
Sbjct:   241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query:   299 XXXXXXX--YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
                      +L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct:   301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query:   357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
             TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct:   361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

GO:0016042 "lipid catabolic process" evidence=IEA

GO:0001667 "ameboidal cell migration" evidence=IEA

GO:0001961 "positive regulation of cytokine-mediated signaling pathway" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0007097 "nuclear migration" evidence=IEA

GO:0009306 "protein secretion" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0017145 "stem cell division" evidence=IEA

GO:0021895 "cerebral cortex neuron differentiation" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0031982 "vesicle" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0033267 "axon part" evidence=IEA

GO:0036035 "osteoclast development" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0045505 "dynein intermediate chain binding" evidence=IEA

GO:0045773 "positive regulation of axon extension" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

GO:0046329 "negative regulation of JNK cascade" evidence=IEA

GO:0051081 "nuclear envelope disassembly" evidence=IEA

GO:0051660 "establishment of centrosome localization" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0001764 "neuron migration" evidence=ISS;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0000776 "kinetochore" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0045502 "dynein binding" evidence=IDA

GO:0007017 "microtubule-based process" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0000235 "astral microtubule" evidence=IDA

GO:0031023 "microtubule organizing center organization" evidence=IMP

GO:0005813 "centrosome" evidence=ISS;IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0008201 "heparin binding" evidence=ISS

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0021540 "corpus callosum morphogenesis" evidence=IMP

GO:0021987 "cerebral cortex development" evidence=IMP

GO:0050885 "neuromuscular process controlling balance" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=ISS

GO:0007268 "synaptic transmission" evidence=ISS

GO:0007405 "neuroblast proliferation" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0008090 "retrograde axon cargo transport" evidence=ISS

GO:0019226 "transmission of nerve impulse" evidence=ISS

GO:0030036 "actin cytoskeleton organization" evidence=ISS

GO:0032319 "regulation of Rho GTPase activity" evidence=ISS

GO:0047496 "vesicle transport along microtubule" evidence=ISS

GO:0043274 "phospholipase binding" evidence=ISS

GO:0046469 "platelet activating factor metabolic process" evidence=ISS

GO:0034452 "dynactin binding" evidence=ISS

GO:0001675 "acrosome assembly" evidence=ISS

GO:0007611 "learning or memory" evidence=ISS

GO:0021766 "hippocampus development" evidence=ISS

GO:0021819 "layer formation in cerebral cortex" evidence=ISS

GO:0031252 "cell leading edge" evidence=ISS

GO:0031512 "motile primary cilium" evidence=ISS

GO:0031513 "nonmotile primary cilium" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0051219 "phosphoprotein binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z521 PAFAH1B1 "Platelet-activating factor acetylhydrolase IB subunit alpha" [Sus scrofa (taxid:9823)]

 Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
 Identities = 273/410 (66%), Positives = 320/410 (78%)

Query:     1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
             MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct:     1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60

Query:    59 LQKKVIXXXXXXXXXXXXYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
             LQKKV+            +  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct:    61 LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query:   119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
             S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD  
Sbjct:   121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180

Query:   179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
              ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct:   181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query:   239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
             + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA    
Sbjct:   241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query:   299 XXXXXXX--YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
                      +L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct:   301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query:   357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
             TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct:   361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0051081 "nuclear envelope disassembly" evidence=IEA

GO:0050885 "neuromuscular process controlling balance" evidence=IEA

GO:0048854 "brain morphogenesis" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0047496 "vesicle transport along microtubule" evidence=IEA

GO:0046329 "negative regulation of JNK cascade" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0036035 "osteoclast development" evidence=IEA

GO:0032319 "regulation of Rho GTPase activity" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0031023 "microtubule organizing center organization" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0021819 "layer formation in cerebral cortex" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021540 "corpus callosum morphogenesis" evidence=IEA

GO:0009306 "protein secretion" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0008090 "retrograde axon cargo transport" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007611 "learning or memory" evidence=IEA

GO:0007405 "neuroblast proliferation" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001961 "positive regulation of cytokine-mediated signaling pathway" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001675 "acrosome assembly" evidence=IEA

GO:0001667 "ameboidal cell migration" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000235 "astral microtubule" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

MGI|MGI:109520 Pafah1b1 "platelet-activating factor acetylhydrolase, isoform 1b, subunit 1" [Mus musculus (taxid:10090)]

 Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
 Identities = 273/410 (66%), Positives = 320/410 (78%)

Query:     1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
             MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct:     1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60

Query:    59 LQKKVIXXXXXXXXXXXXYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
             LQKKV+            +  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct:    61 LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query:   119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
             S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD  
Sbjct:   121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180

Query:   179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
              ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct:   181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query:   239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
             + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA    
Sbjct:   241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query:   299 XXXXXXX--YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
                      +L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct:   301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query:   357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
             TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct:   361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

GO:0000132 "establishment of mitotic spindle orientation" evidence=ISO

GO:0000226 "microtubule cytoskeleton organization" evidence=IGI;IMP

GO:0000235 "astral microtubule" evidence=ISO

GO:0000776 "kinetochore" evidence=ISO

GO:0001667 "ameboidal cell migration" evidence=IMP

GO:0001675 "acrosome assembly" evidence=IMP

GO:0001764 "neuron migration" evidence=ISO;IGI;IMP

GO:0001961 "positive regulation of cytokine-mediated signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005635 "nuclear envelope" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005871 "kinesin complex" evidence=ISO

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=ISO;IDA

GO:0005938 "cell cortex" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007017 "microtubule-based process" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007097 "nuclear migration" evidence=ISO

GO:0007268 "synaptic transmission" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007405 "neuroblast proliferation" evidence=IMP

GO:0007611 "learning or memory" evidence=IMP

GO:0008017 "microtubule binding" evidence=ISO;IDA

GO:0008090 "retrograde axon cargo transport" evidence=IDA

GO:0008344 "adult locomotory behavior" evidence=ISO;IMP

GO:0009306 "protein secretion" evidence=IMP

GO:0010977 "negative regulation of neuron projection development" evidence=ISO

GO:0015630 "microtubule cytoskeleton" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016042 "lipid catabolic process" evidence=IEA

GO:0016477 "cell migration" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017145 "stem cell division" evidence=ISO

GO:0019226 "transmission of nerve impulse" evidence=IMP

GO:0021540 "corpus callosum morphogenesis" evidence=ISO

GO:0021766 "hippocampus development" evidence=IGI;IMP

GO:0021819 "layer formation in cerebral cortex" evidence=IGI

GO:0021895 "cerebral cortex neuron differentiation" evidence=ISO

GO:0021987 "cerebral cortex development" evidence=ISO;IGI;IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0030426 "growth cone" evidence=ISO

GO:0031023 "microtubule organizing center organization" evidence=ISO

GO:0031252 "cell leading edge" evidence=IDA

GO:0031512 "motile primary cilium" evidence=IDA

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0031982 "vesicle" evidence=ISO

GO:0032319 "regulation of Rho GTPase activity" evidence=IMP

GO:0032403 "protein complex binding" evidence=ISO

GO:0033267 "axon part" evidence=ISO

GO:0036035 "osteoclast development" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0043005 "neuron projection" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0045502 "dynein binding" evidence=ISO

GO:0045505 "dynein intermediate chain binding" evidence=ISO

GO:0045773 "positive regulation of axon extension" evidence=ISO

GO:0045931 "positive regulation of mitotic cell cycle" evidence=ISO

GO:0046329 "negative regulation of JNK cascade" evidence=IGI

GO:0047496 "vesicle transport along microtubule" evidence=IGI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0048854 "brain morphogenesis" evidence=ISO

GO:0050885 "neuromuscular process controlling balance" evidence=ISO;IMP

GO:0051081 "nuclear envelope disassembly" evidence=IMP

GO:0051219 "phosphoprotein binding" evidence=IPI

GO:0051301 "cell division" evidence=IEA

GO:0051660 "establishment of centrosome localization" evidence=ISO

RGD|620331 Pafah1b1 "platelet-activating factor acetylhydrolase, isoform 1b, subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
 Identities = 273/410 (66%), Positives = 320/410 (78%)

Query:     1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
             MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct:     1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60

Query:    59 LQKKVIXXXXXXXXXXXXYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
             LQKKV+            +  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct:    61 LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query:   119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
             S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD  
Sbjct:   121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180

Query:   179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
              ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct:   181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query:   239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
             + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA    
Sbjct:   241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query:   299 XXXXXXX--YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
                      +L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct:   301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query:   357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
             TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct:   361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA;ISO

GO:0000226 "microtubule cytoskeleton organization" evidence=ISO

GO:0000235 "astral microtubule" evidence=IEA;ISO

GO:0000776 "kinetochore" evidence=IEA;ISO

GO:0001667 "ameboidal cell migration" evidence=IEA;ISO

GO:0001675 "acrosome assembly" evidence=IEA;ISO

GO:0001764 "neuron migration" evidence=ISO;IMP

GO:0001961 "positive regulation of cytokine-mediated signaling pathway" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005635 "nuclear envelope" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005871 "kinesin complex" evidence=IDA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=ISO

GO:0005938 "cell cortex" evidence=IEA;ISO

GO:0006810 "transport" evidence=IEA

GO:0007017 "microtubule-based process" evidence=ISO

GO:0007067 "mitosis" evidence=IEA

GO:0007097 "nuclear migration" evidence=IMP

GO:0007268 "synaptic transmission" evidence=IEA;ISO

GO:0007405 "neuroblast proliferation" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEP

GO:0007611 "learning or memory" evidence=IEA;ISO

GO:0008017 "microtubule binding" evidence=IEA;ISO

GO:0008090 "retrograde axon cargo transport" evidence=IEA;ISO

GO:0008344 "adult locomotory behavior" evidence=IEA;ISO

GO:0009306 "protein secretion" evidence=IEA;ISO

GO:0010977 "negative regulation of neuron projection development" evidence=IMP

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0016042 "lipid catabolic process" evidence=IEA

GO:0016477 "cell migration" evidence=ISO

GO:0017145 "stem cell division" evidence=IMP

GO:0019226 "transmission of nerve impulse" evidence=ISO

GO:0021540 "corpus callosum morphogenesis" evidence=IEA;ISO

GO:0021766 "hippocampus development" evidence=IEA;ISO

GO:0021819 "layer formation in cerebral cortex" evidence=IEA;ISO

GO:0021895 "cerebral cortex neuron differentiation" evidence=IMP

GO:0021987 "cerebral cortex development" evidence=ISO

GO:0030036 "actin cytoskeleton organization" evidence=IEA;ISO

GO:0030426 "growth cone" evidence=IDA

GO:0031023 "microtubule organizing center organization" evidence=IEA;ISO

GO:0031252 "cell leading edge" evidence=IEA;ISO

GO:0031512 "motile primary cilium" evidence=IEA;ISO

GO:0031965 "nuclear membrane" evidence=IEA

GO:0031982 "vesicle" evidence=IDA

GO:0032319 "regulation of Rho GTPase activity" evidence=IEA;ISO

GO:0032403 "protein complex binding" evidence=IPI

GO:0033267 "axon part" evidence=IDA

GO:0036035 "osteoclast development" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0045502 "dynein binding" evidence=ISO

GO:0045505 "dynein intermediate chain binding" evidence=IDA

GO:0045773 "positive regulation of axon extension" evidence=IMP

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IMP

GO:0046329 "negative regulation of JNK cascade" evidence=IEA;ISO

GO:0047179 "platelet-activating factor acetyltransferase activity" evidence=TAS

GO:0047496 "vesicle transport along microtubule" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0048854 "brain morphogenesis" evidence=IEA;ISO

GO:0050885 "neuromuscular process controlling balance" evidence=IEA;ISO

GO:0051081 "nuclear envelope disassembly" evidence=IEA;ISO

GO:0051219 "phosphoprotein binding" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

GO:0051660 "establishment of centrosome localization" evidence=IMP

GO:0005730 "nucleolus" evidence=ISO

GO:0031513 "nonmotile primary cilium" evidence=ISO

UNIPROTKB|P63004 Pafah1b1 "Platelet-activating factor acetylhydrolase IB subunit alpha" [Rattus norvegicus (taxid:10116)]

 Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
 Identities = 273/410 (66%), Positives = 320/410 (78%)

Query:     1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
             MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct:     1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60

Query:    59 LQKKVIXXXXXXXXXXXXYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
             LQKKV+            +  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct:    61 LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query:   119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
             S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD  
Sbjct:   121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180

Query:   179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
              ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct:   181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query:   239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
             + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA    
Sbjct:   241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query:   299 XXXXXXX--YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
                      +L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct:   301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query:   357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
             TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct:   361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

GO:0007067 "mitosis" evidence=IEA

UNIPROTKB|P43033 PAFAH1B1 "Platelet-activating factor acetylhydrolase IB subunit alpha" [Bos taurus (taxid:9913)]

 Score = 1494 (531.0 bits), Expect = 3.6e-153, P = 3.6e-153
 Identities = 272/410 (66%), Positives = 321/410 (78%)

Query:     1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
             MVLSQRQR+ELN+A+ADYL SNGY +A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct:     1 MVLSQRQRDELNRAIADYLRSNGYEAAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60

Query:    59 LQKKVIXXXXXXXXXXXXYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
             LQKKV+            +  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct:    61 LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120

Query:   119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
             S+M S SEDATI++WDYETG++ER L GH DSV+DI+FD SGKLL SCSADM++KLWD  
Sbjct:   121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQ 180

Query:   179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
              ++C++TM GHDHNV+ VA +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct:   181 GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240

Query:   239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
             + + DGTL+ASCSND T RVW +ATKE KAELR H+H VEC++WAP  +  SISEA    
Sbjct:   241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSE 300

Query:   299 XXXXXXX--YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
                      +L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct:   301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360

Query:   357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
             TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct:   361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

GO:0045502 "dynein binding" evidence=IDA

GO:0034452 "dynactin binding" evidence=IDA

GO:0046469 "platelet activating factor metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0043274 "phospholipase binding" evidence=IDA

GO:0008201 "heparin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008017 "microtubule binding" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0016042 "lipid catabolic process" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B4QHG6	LIS1_DROSI	No assigned EC number	0.7017	1.0	0.9878	N/A	N/A
A8XZJ9	LIS1_CAEBR	No assigned EC number	0.5307	0.9581	0.9974	N/A	N/A
Q90ZL4	LIS1_XENLA	No assigned EC number	0.6853	1.0	0.9902	N/A	N/A
Q4RJN5	LIS1_TETNG	No assigned EC number	0.6853	1.0	0.9902	N/A	N/A
Q9PTR5	LIS1_CHICK	No assigned EC number	0.6902	1.0	0.9902	yes	N/A
B7PS00	LIS1_IXOSC	No assigned EC number	0.6900	0.9950	0.9829	N/A	N/A
Q9GL51	LIS1_PIG	No assigned EC number	0.6951	1.0	0.9902	yes	N/A
Q17N69	LIS1_AEDAE	No assigned EC number	0.6968	1.0	0.9926	N/A	N/A
B3MEY6	LIS1_DROAN	No assigned EC number	0.6919	1.0	0.9878	N/A	N/A
Q5IS43	LIS1_PANTR	No assigned EC number	0.6951	1.0	0.9902	yes	N/A
B4P6P9	LIS1_DROYA	No assigned EC number	0.7017	1.0	0.9878	N/A	N/A
Q5REG7	LIS1_PONAB	No assigned EC number	0.6951	1.0	0.9902	yes	N/A
B4JWA1	LIS1_DROGR	No assigned EC number	0.6968	1.0	0.9878	N/A	N/A
B4HSL3	LIS1_DROSE	No assigned EC number	0.7017	1.0	0.9878	N/A	N/A
Q7KNS3	LIS1_DROME	No assigned EC number	0.7017	1.0	0.9878	yes	N/A
B4KT48	LIS1_DROMO	No assigned EC number	0.6943	1.0	0.9878	N/A	N/A
Q6NZH4	LIS1_XENTR	No assigned EC number	0.6853	1.0	0.9902	yes	N/A
D3TLL6	LIS1_GLOMM	No assigned EC number	0.6992	1.0	0.9878	N/A	N/A
B5X3C4	LIS1B_SALSA	No assigned EC number	0.6756	1.0	0.9902	N/A	N/A
A7S338	LIS1_NEMVE	No assigned EC number	0.6161	1.0	0.9926	N/A	N/A
P43033	LIS1_BOVIN	No assigned EC number	0.6951	1.0	0.9902	yes	N/A
Q291L9	LIS1_DROPS	No assigned EC number	0.6943	1.0	0.9878	yes	N/A
P43034	LIS1_HUMAN	No assigned EC number	0.6975	1.0	0.9902	yes	N/A
B4GAJ1	LIS1_DROPE	No assigned EC number	0.6943	1.0	0.9878	N/A	N/A
D3BUN1	LIS1_POLPA	No assigned EC number	0.5322	0.9852	0.9592	N/A	N/A
B3NPW0	LIS1_DROER	No assigned EC number	0.7017	1.0	0.9878	N/A	N/A
B3S4I5	LIS1_TRIAD	No assigned EC number	0.6283	1.0	0.9926	N/A	N/A
P0CS42	LIS1_CRYNJ	No assigned EC number	0.4930	0.9778	0.9168	yes	N/A
B0LSW3	LIS1_FELCA	No assigned EC number	0.6975	1.0	0.9902	N/A	N/A
Q9NDC9	LIS1_CAEEL	No assigned EC number	0.5626	0.9926	0.9975	yes	N/A
Q8HXX0	LIS1_MACFA	No assigned EC number	0.6975	1.0	0.9902	N/A	N/A
P63005	LIS1_MOUSE	No assigned EC number	0.6975	1.0	0.9902	yes	N/A
P63004	LIS1_RAT	No assigned EC number	0.6975	1.0	0.9902	yes	N/A
Q7T394	LIS1A_DANRE	No assigned EC number	0.6878	1.0	0.9902	no	N/A
C3XVT5	LIS1_BRAFL	No assigned EC number	0.6822	1.0	1.0	yes	N/A
B5X3Z6	LIS1A_SALSA	No assigned EC number	0.6878	1.0	0.9902	N/A	N/A
Q8I0F4	LIS1_DICDI	No assigned EC number	0.5346	0.9901	0.9594	yes	N/A
C4Q0P6	LIS1_SCHMA	No assigned EC number	0.5805	0.9876	0.9616	N/A	N/A
Q803D2	LIS1B_DANRE	No assigned EC number	0.6975	1.0	0.9902	yes	N/A
B4MY65	LIS1_DROWI	No assigned EC number	0.6992	1.0	0.9926	N/A	N/A
B4LQ21	LIS1_DROVI	No assigned EC number	0.6968	1.0	0.9878	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	406
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-106
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-66
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-53
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-53
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-51
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-46
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-31
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-10
smart00320	40	smart00320, WD40, WD40 repeats	1e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-10
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	7e-10
smart00320	40	smart00320, WD40, WD40 repeats	8e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-09
smart00320	40	smart00320, WD40, WD40 repeats	5e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-08
smart00320	40	smart00320, WD40, WD40 repeats	7e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-07
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	4e-07
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	6e-07
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	8e-07
smart00320	40	smart00320, WD40, WD40 repeats	4e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	4e-06
smart00320	40	smart00320, WD40, WD40 repeats	9e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	9e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	1e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  315 bits (809), Expect = e-106
 Identities = 126/307 (41%), Positives = 174/307 (56%), Gaps = 18/307 (5%)

Query: 98  EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFD 157
            +  L GH   V  V F P   L+A+ S D TI++WD ETGE  R L GH   V+D+A  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 158 QSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
             G  L S S+D +++LWD+ T +C++T+ GH   V+ VAF P+   + S+SRDKTIK+W
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
           +V TG C+ TL GH +WV  +  SPDGT +AS S D T ++W L T +  A L GH   V
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180

Query: 278 ECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
             VA++P                   G  L + S D TIKLWD+ +G  L TL GH+N V
Sbjct: 181 NSVAFSP------------------DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGV 222

Query: 338 RGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVD 397
             V F P G  L S  +D T+RVWD      ++TL  H++ VTSL +      + +GS D
Sbjct: 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282

Query: 398 KTVKVWE 404
            T+++W+
Sbjct: 283 GTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  212 bits (541), Expect = 3e-66
 Identities = 85/225 (37%), Positives = 121/225 (53%), Gaps = 18/225 (8%)

Query: 182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVS 241
             +T++GH   VT VAF P+   + + S D TIK+W++ TG  ++TL GH   VR +  S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 242 PDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQ 301
            DGT LAS S+D T R+W L T E    L GH   V  VA++P                 
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD---------------- 104

Query: 302 GGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVW 361
             G  L++ SRDKTIK+WDV +G  L TL GH +WV  V F P G ++ S   D T+++W
Sbjct: 105 --GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 362 DTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           D    + + TL  H+  V S+ F      +++ S D T+K+W+  
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  179 bits (456), Expect = 1e-53
 Identities = 72/168 (42%), Positives = 100/168 (59%)

Query: 93  IPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQ 152
           +        L GH   V  V F P  + +AS S+D TI+LWD  TG+    L GH   V 
Sbjct: 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN 181

Query: 153 DIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK 212
            +AF   G+ L+S S+D ++KLWD+ST +CL T++GH++ V  VAF P+   + S S D 
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241

Query: 213 TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
           TI++W++ TG CV+TL+GH   V  +  SPDG  LAS S D T R+W 
Sbjct: 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  183 bits (465), Expect = 3e-53
 Identities = 113/311 (36%), Positives = 171/311 (54%), Gaps = 25/311 (8%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSE-DATIRLWDYETGEYERALHGHLDSVQDIAFDQSG 160
           L GH   V  + F P   L+AS S  D TI+LWD  TG+    L GH D V  +AF   G
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210

Query: 161 K-LLVSCSADMSLKLWDMSTYQCLK-TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE 218
             L+ S S+D +++LWD+ST + L+ T+ GH  +V   +F P+   + S S D TI++W+
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTIRLWD 269

Query: 219 VATGY-CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR--GHDH 275
           + +    ++TL+GH   V  +  SPDG LLAS S+D T R+W L T +  + L   GH+ 
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329

Query: 276 TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN 335
            V  ++++P                  G   ++ GS D TI+LWD+ +G  L TL GH N
Sbjct: 330 PVSSLSFSPD-----------------GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372

Query: 336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGS 395
            V  V+F P G+ + S   D T+R+WD +    ++ L+ H+  VTSLDF      + +GS
Sbjct: 373 -VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431

Query: 396 VDKTVKVWECR 406
            D T+++W+ +
Sbjct: 432 SDNTIRLWDLK 442

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  178 bits (451), Expect = 3e-51
 Identities = 127/365 (34%), Positives = 186/365 (50%), Gaps = 32/365 (8%)

Query: 55  SVIRLQKKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIF 114
            +++  +    L S    +      G    A  S +           L GH   +  + F
Sbjct: 14  KLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAF 73

Query: 115 HPVFSLMASCSEDATIRLWDYETGEYE-RALHG-HLDSVQDIAF---DQSGKLLVSCSAD 169
            P   L+ S S D TI+LWD + GE   ++L G H  SV  +A    D +  LL S S D
Sbjct: 74  SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLD 133

Query: 170 MSLKLWDMST-YQCLKTMQGHDHNVTGVAFLPNSDFVLSASR-DKTIKMWEVATGYCVKT 227
            ++KLWD+ST  + ++T++GH  +VT +AF P+   + S S  D TIK+W++ TG  + T
Sbjct: 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193

Query: 228 LTGHREWVRQIKVSPDGT-LLASCSNDHTARVWSLAT-KETKAELRGHDHTVECVAWAPG 285
           L GH + V  +  SPDG  L+AS S+D T R+W L+T K  ++ L GH  +V   +++P 
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP- 251

Query: 286 VASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDV-GSGSLLFTLIGHDNWVRGVTFHP 344
                             G  LA+GS D TI+LWD+  S SLL TL GH + V  V F P
Sbjct: 252 -----------------DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294

Query: 345 GGKYLVSCGDDKTLRVWDTANKR--NMKTLEAHSHFVTSLDFHRAHPYVVTG-SVDKTVK 401
            GK L S   D T+R+WD    +  +  TL+ H   V+SL F      +V+G S D T++
Sbjct: 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Query: 402 VWECR 406
           +W+ R
Sbjct: 355 LWDLR 359

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  165 bits (418), Expect = 2e-46
 Identities = 105/272 (38%), Positives = 145/272 (53%), Gaps = 26/272 (9%)

Query: 102 LSGHRSPVIKVIFHPVFSLM-ASCSEDATIRLWDYETGEYER-ALHGHLDSVQDIAFDQS 159
           L+GH  PV  + F P   L+ AS S D TIRLWD  TG+  R  L GH DSV   +F   
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD 252

Query: 160 GKLLVSCSADMSLKLWDM-STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE 218
           G LL S S+D +++LWD+ S+   L+T+ GH  +V  VAF P+   + S S D T+++W+
Sbjct: 253 GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312

Query: 219 VATG--YCVKTLTGHREWVRQIKVSPDGTLLA-SCSNDHTARVWSLATKETKAELRGHDH 275
           + TG      TL GH   V  +  SPDG+LL    S+D T R+W L T +    L GH  
Sbjct: 313 LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS- 371

Query: 276 TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN 335
            V  V+++P                   G  +++GS D T++LWD+ +GSLL  L GH +
Sbjct: 372 NVLSVSFSPD------------------GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS 413

Query: 336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR 367
            V  + F P GK L S   D T+R+WD     
Sbjct: 414 RVTSLDFSPDGKSLASGSSDNTIRLWDLKTSL 445

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  124 bits (310), Expect = 2e-31
 Identities = 89/293 (30%), Positives = 143/293 (48%), Gaps = 32/293 (10%)

Query: 123 SCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC 182
             +   +         + E     +  S+  +   +SG LL++  +D  + L D+S+   
Sbjct: 2   VDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSL-- 59

Query: 183 LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTG-HREWVRQIKV 240
              ++GH+ ++T +AF P+ + +LS S D TIK+W++  G   +K+L G H   V ++ +
Sbjct: 60  --LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLAL 117

Query: 241 -SPDGTLLASC--SNDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAG 296
            SPDG  +     S D T ++W L+T  +    L GH  +V  +A++P            
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP------------ 165

Query: 297 RPPGQGGGPYLATGSR-DKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHP-GGKYLVSCGD 354
                  G  LA+GS  D TIKLWD+ +G  L TL GH + V  + F P GG  + S   
Sbjct: 166 ------DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219

Query: 355 DKTLRVWDTAN-KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           D T+R+WD +  K    TL  HS  V S  F      + +GS D T+++W+ R
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLR 271

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.8 bits (151), Expect = 1e-10
 Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 92  WIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSV 151
           W  R  +        S V+ V F P   +++S S D T+RLWD  TG   R L GH   V
Sbjct: 356 WDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRV 415

Query: 152 QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD 211
             + F   GK L S S+D +++LWD+ T                V+F P+   + S S D
Sbjct: 416 TSLDFSPDGKSLASGSSDNTIRLWDLKTSLK------------SVSFSPDGKVLASKSSD 463

Query: 212 KTI 214
            ++
Sbjct: 464 LSV 466

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 22/40 (55%), Positives = 25/40 (62%)

Query: 323 SGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
           SG LL TL GH   V  V F P GKYL S  DD T+++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 21/39 (53%), Positives = 22/39 (56%)

Query: 324 GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
           G LL TL GH   V  V F P G  L S  DD T+RVWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 60.5 bits (146), Expect = 7e-10
 Identities = 71/277 (25%), Positives = 116/277 (41%), Gaps = 57/277 (20%)

Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ-GHDHNVTGVAFLPNSDF-------- 204
           I FD+ G+   +   +  +K+     ++C   ++ G D +   V     S          
Sbjct: 489 IGFDRDGEFFATAGVNKKIKI-----FECESIIKDGRDIHYPVVELASRSKLSGICWNSY 543

Query: 205 ----VLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVW 259
               V S++ +  +++W+VA    V  +  H + V  I  S  D TLLAS S+D + ++W
Sbjct: 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW 603

Query: 260 ------SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD 313
                 S+ T +TKA        + CV +     SES             G  LA GS D
Sbjct: 604 SINQGVSIGTIKTKA-------NICCVQF----PSES-------------GRSLAFGSAD 639

Query: 314 KTIKLWDVGSGSL-LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA------NK 366
             +  +D+ +  L L T+IGH   V  V F      LVS   D TL++WD +      N+
Sbjct: 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMSISGINE 698

Query: 367 RNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
             + +   H++    +    +  Y+ TGS    V V+
Sbjct: 699 TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY 735

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 53.5 bits (129), Expect = 8e-10
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 221 TGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
           +G  +KTL GH   V  +  SPDG  LAS S+D T ++W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 222 GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
           G  ++TL GH   V  +  SPDG LLAS S+D T RVW 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE 218
           + + LKT++GH   VT VAF P+  ++ S S D TIK+W+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 15/37 (40%), Positives = 25/37 (67%)

Query: 181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
           + L+T++GH   VT VAF P+ + + S S D T+++W
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 137 TGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD 176
           +GE  + L GH   V  +AF   GK L S S D ++KLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 138 GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD 176
           G+  R L GH   V  +AF   G LL S S D ++++WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 369 MKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
           ++TL+ H+  VTS+ F      + +GS D TV+VW
Sbjct: 4   LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 11/116 (9%)

Query: 153 DIAFD--QSGKLLVSCSADMSLKLWDM-------STYQCLKTMQGHDHNVTGVAFLPNSD 203
           D+AF+     KL  + S D ++  W +       +    +  +QGH   V  V+F P++ 
Sbjct: 80  DVAFNPFDPQKLFTA-SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM 138

Query: 204 FVL-SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV 258
            VL SA  D  + +W+V  G  V+ +  H + +  ++ + DG+LL + S D    +
Sbjct: 139 NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194

Length = 493

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 51.5 bits (123), Expect = 4e-07
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 95  RAPEKFALSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDY--------ETGEYERALH 145
           R P    L GH S ++ + F+P FS ++AS SED TIR+W+         E  + +  L 
Sbjct: 63  RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK 122

Query: 146 GHLDSVQDIAFDQSGK-LLVSCSADMSLKLWDM 177
           GH   +  I ++     ++ S   D  + +WD+
Sbjct: 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 365 NKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
           +   +KTL+ H+  VTS+ F     Y+ +GS D T+K+W+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 50.7 bits (121), Expect = 8e-07
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 307 LATGSRDKTIKLWDVGSGSL-------LFTLIGHDNWVRGVTFHPGGK-YLVSCGDDKTL 358
           L T S D TI  W +    L       +  L GH   V  V+FHP     L S G D  +
Sbjct: 91  LFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150

Query: 359 RVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
            VWD    + ++ ++ HS  +TSL+++     + T S DK + + + R
Sbjct: 151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR 198

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 17/33 (51%), Positives = 20/33 (60%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWD 134
           L GH  PV  V F P    +AS S+D TI+LWD
Sbjct: 8   LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWD 134
           L GH  PV  V F P  +L+AS S+D T+R+WD
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 9/145 (6%)

Query: 96  APEKFALSGHRSPVIKVIFHPVFSL-MASCSEDATIRLWDYETGEYERA-------LHGH 147
           A     L G   P+I V F+P     + + SED TI  W        +        L GH
Sbjct: 65  ASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH 124

Query: 148 LDSVQDIAFDQSGK-LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVL 206
              V  ++F  S   +L S  ADM + +WD+   + ++ ++ H   +T + +  +   + 
Sbjct: 125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLC 184

Query: 207 SASRDKTIKMWEVATGYCVKTLTGH 231
           + S+DK + + +   G  V ++  H
Sbjct: 185 TTSKDKKLNIIDPRDGTIVSSVEAH 209

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 18/58 (31%)

Query: 263 TKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWD 320
           + E    L+GH   V  VA++P                   G YLA+GS D TIKLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPD------------------GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 18/57 (31%)

Query: 264 KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWD 320
            +    L+GH   V  VA++P                   G  LA+GS D T+++WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPD------------------GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 7  QREELNKAVADYLLSNGYLSALEGFKKDADLP 38
           R ELN+ + +YLL NGY    E  +K++ L 
Sbjct: 2  SRSELNRLILEYLLRNGYEETAETLQKESGLS 33

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 10/107 (9%)

Query: 119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQ----SGKLLVSCSADMSLKL 174
           +L+AS S+D +++LW    G       G + +  +I   Q    SG+ L   SAD  +  
Sbjct: 589 TLLASGSDDGSVKLWSINQG----VSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYY 644

Query: 175 WDMSTYQC-LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA 220
           +D+   +  L TM GH   V+ V F+ +S  V S+S D T+K+W+++
Sbjct: 645 YDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLV-SSSTDNTLKLWDLS 690

Length = 793

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 39/227 (17%)

Query: 193 VTGVAFLPNSDFVLSASRDKTIKMWEVAT--------GYCVKTLTGHRE-----WVRQIK 239
           V  + F  + +F  +A  +K IK++E  +         Y V  L    +     W   IK
Sbjct: 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK 545

Query: 240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPP 299
                + +AS + +   +VW +A  +   E++ H+  V    W       SI  ++  P 
Sbjct: 546 -----SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRV----W-------SIDYSSADPT 589

Query: 300 GQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTF-HPGGKYLVSCGDDKTL 358
                  LA+GS D ++KLW +  G  + T+    N +  V F    G+ L     D  +
Sbjct: 590 ------LLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKV 642

Query: 359 RVWDTAN-KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
             +D  N K  + T+  HS  V+ + F  +   +V+ S D T+K+W+
Sbjct: 643 YYYDLRNPKLPLCTMIGHSKTVSYVRFVDSST-LVSSSTDNTLKLWD 688

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 25/157 (15%)

Query: 228 LTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKA-------ELRGHDHTVEC 279
           L G    +  +  +P D   L + S D T   W +  +            L+GH   V  
Sbjct: 71  LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI 130

Query: 280 VAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRG 339
           V++ P   +                  LA+   D  + +WDV  G  +  +  H + +  
Sbjct: 131 VSFHPSAMN-----------------VLASAGADMVVNVWDVERGKAVEVIKCHSDQITS 173

Query: 340 VTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
           + ++  G  L +   DK L + D  +   + ++EAH+
Sbjct: 174 LEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	406
KOG0295|consensus	406		100.0
KOG0272|consensus	459		100.0
KOG0271|consensus	480		100.0
KOG0271|consensus	480		100.0
KOG0286|consensus	343		100.0
KOG0272|consensus	459		100.0
KOG0273|consensus	524		100.0
KOG0279|consensus	315		100.0
KOG0285|consensus	460		100.0
KOG0265|consensus	338		100.0
KOG0284|consensus	464		100.0
KOG0266|consensus	456		100.0
KOG0263|consensus	707		100.0
KOG0296|consensus	399		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0282|consensus	503		100.0
KOG0645|consensus	312		100.0
KOG0315|consensus	311		100.0
KOG0276|consensus	794		100.0
KOG0279|consensus	315		100.0
KOG0281|consensus	499		100.0
KOG0275|consensus	508		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0291|consensus	893		100.0
KOG0319|consensus	775		100.0
KOG0319|consensus	775		100.0
KOG0286|consensus	343		100.0
KOG0315|consensus	311		100.0
KOG0318|consensus	603		100.0
KOG0291|consensus	893		100.0
KOG0316|consensus	307		100.0
KOG0273|consensus	524		100.0
KOG0285|consensus	460		100.0
KOG0263|consensus	707		100.0
KOG0292|consensus	1202		100.0
KOG0293|consensus	519		100.0
KOG0295|consensus	406		100.0
KOG0313|consensus	423		100.0
KOG0276|consensus	794		100.0
KOG0284|consensus	464		100.0
KOG0281|consensus	499		100.0
KOG0306|consensus	888		100.0
KOG0274|consensus	537		100.0
KOG0316|consensus	307		100.0
KOG0266|consensus	456		100.0
KOG0288|consensus	459		100.0
KOG0643|consensus	327		100.0
KOG0278|consensus	334		100.0
KOG0318|consensus	603		100.0
KOG0640|consensus	430		100.0
KOG0289|consensus	506		100.0
KOG0645|consensus	312		100.0
KOG0277|consensus	311		100.0
KOG1407|consensus	313		100.0
KOG0265|consensus	338		100.0
KOG0305|consensus	484		100.0
KOG1446|consensus	311		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0300|consensus	481		100.0
KOG0299|consensus	479		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0310|consensus	487		100.0
KOG0292|consensus	1202		100.0
KOG0973|consensus	942		100.0
KOG0296|consensus	399		100.0
KOG0268|consensus	433		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0274|consensus	537		100.0
KOG0301|consensus	745		100.0
KOG0772|consensus	641		100.0
KOG0313|consensus	423		100.0
KOG0277|consensus	311		100.0
KOG0641|consensus	350		100.0
KOG0283|consensus	712		100.0
KOG0282|consensus	503		100.0
KOG0294|consensus	362		100.0
KOG0306|consensus	888		100.0
KOG0293|consensus	519		100.0
KOG0308|consensus	735		100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0647|consensus	347		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0283|consensus	712		100.0
KOG0973|consensus	942		100.0
KOG1446|consensus	311		100.0
KOG0305|consensus	484		100.0
KOG0278|consensus	334		100.0
PTZ00420	568	coronin; Provisional	100.0
KOG1407|consensus	313		99.98
KOG0294|consensus	362		99.98
KOG1332|consensus	299		99.98
KOG2096|consensus	420		99.98
KOG1036|consensus	323		99.98
KOG0308|consensus	735		99.97
KOG1408|consensus	1080		99.97
KOG0639|consensus	705		99.97
KOG0264|consensus	422		99.97
KOG0288|consensus	459		99.97
KOG0643|consensus	327		99.97
KOG0289|consensus	506		99.97
KOG0264|consensus	422		99.97
KOG0641|consensus	350		99.97
KOG0300|consensus	481		99.97
KOG0310|consensus	487		99.97
KOG0275|consensus	508		99.97
KOG0267|consensus	825		99.97
KOG0640|consensus	430		99.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.97
KOG2445|consensus	361		99.97
KOG1274|consensus	933		99.97
KOG0299|consensus	479		99.97
KOG1332|consensus	299		99.96
KOG0646|consensus	476		99.96
KOG1273|consensus	405		99.96
KOG0301|consensus	745		99.96
KOG1539|consensus	910		99.96
KOG0268|consensus	433		99.96
KOG0646|consensus	476		99.96
KOG1539|consensus	910		99.96
KOG0650|consensus	733		99.96
KOG0267|consensus	825		99.96
KOG2055|consensus	514		99.96
KOG0647|consensus	347		99.96
KOG0772|consensus	641		99.96
KOG0269|consensus	839		99.96
KOG2048|consensus	691		99.96
KOG2106|consensus	626		99.96
KOG4283|consensus	397		99.96
KOG1063|consensus	764		99.95
KOG2445|consensus	361		99.95
KOG0269|consensus	839		99.95
KOG4328|consensus	498		99.95
KOG1274|consensus	933		99.95
KOG1036|consensus	323		99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG1408|consensus	1080		99.95
KOG0321|consensus	720		99.95
KOG2106|consensus	626		99.94
KOG1063|consensus	764		99.94
KOG1034|consensus	385		99.94
KOG0270|consensus	463		99.94
KOG0639|consensus	705		99.94
COG2319	466	FOG: WD40 repeat [General function prediction only	99.94
KOG4283|consensus	397		99.94
KOG1538|consensus	1081		99.94
KOG0302|consensus	440		99.93
KOG0270|consensus	463		99.93
KOG0302|consensus	440		99.93
KOG1009|consensus	434		99.93
KOG0642|consensus	577		99.93
KOG4378|consensus	673		99.93
KOG0307|consensus	1049		99.93
KOG2919|consensus	406		99.92
KOG2096|consensus	420		99.92
KOG4378|consensus	673		99.92
KOG0650|consensus	733		99.92
COG2319	466	FOG: WD40 repeat [General function prediction only	99.92
KOG0644|consensus	1113		99.91
KOG2048|consensus	691		99.91
KOG0321|consensus	720		99.91
KOG1273|consensus	405		99.91
KOG0322|consensus	323		99.91
KOG4328|consensus	498		99.9
KOG0642|consensus	577		99.9
KOG1517|consensus	1387		99.9
KOG1445|consensus	1012		99.9
KOG2055|consensus	514		99.89
KOG1188|consensus	376		99.88
KOG2919|consensus	406		99.88
KOG0307|consensus	1049		99.88
KOG1007|consensus	370		99.88
KOG1009|consensus	434		99.88
KOG1334|consensus	559		99.88
KOG1034|consensus	385		99.88
KOG4227|consensus	609		99.88
KOG1587|consensus	555		99.86
PRK11028	330	6-phosphogluconolactonase; Provisional	99.86
KOG0303|consensus	472		99.86
KOG0649|consensus	325		99.85
KOG1310|consensus	758		99.85
KOG1445|consensus	1012		99.85
KOG1963|consensus	792		99.85
KOG0644|consensus	1113		99.85
KOG1538|consensus	1081		99.84
KOG1240|consensus	1431		99.84
KOG0290|consensus	364		99.84
KOG1007|consensus	370		99.84
PRK01742	429	tolB translocation protein TolB; Provisional	99.84
KOG0303|consensus	472		99.83
KOG1524|consensus	737		99.83
KOG1587|consensus	555		99.82
KOG0649|consensus	325		99.82
KOG0771|consensus	398		99.82
KOG0290|consensus	364		99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
KOG1523|consensus	361		99.8
KOG1310|consensus	758		99.79
KOG1272|consensus	545		99.79
KOG2110|consensus	391		99.78
KOG1517|consensus	1387		99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
KOG1272|consensus	545		99.77
KOG4227|consensus	609		99.77
KOG0771|consensus	398		99.76
KOG1524|consensus	737		99.76
KOG1963|consensus	792		99.75
KOG1188|consensus	376		99.74
KOG2110|consensus	391		99.74
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.73
PRK03629	429	tolB translocation protein TolB; Provisional	99.72
KOG2111|consensus	346		99.72
PRK04922	433	tolB translocation protein TolB; Provisional	99.71
KOG2139|consensus	445		99.71
KOG4497|consensus	447		99.7
PRK02889	427	tolB translocation protein TolB; Provisional	99.69
KOG1334|consensus	559		99.69
KOG0322|consensus	323		99.69
KOG3881|consensus	412		99.68
KOG1240|consensus	1431		99.68
PRK05137	435	tolB translocation protein TolB; Provisional	99.68
KOG1523|consensus	361		99.68
KOG2321|consensus	703		99.67
KOG2111|consensus	346		99.67
KOG1409|consensus	404		99.67
PRK03629	429	tolB translocation protein TolB; Provisional	99.66
KOG2394|consensus	636		99.65
KOG3881|consensus	412		99.65
PRK04922	433	tolB translocation protein TolB; Provisional	99.64
KOG0974|consensus	967		99.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.63
PRK02889	427	tolB translocation protein TolB; Provisional	99.63
KOG4497|consensus	447		99.62
KOG2394|consensus	636		99.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
PRK05137	435	tolB translocation protein TolB; Provisional	99.6
KOG2139|consensus	445		99.59
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.59
KOG1354|consensus	433		99.58
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.56
KOG2315|consensus	566		99.56
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.55
PRK00178	430	tolB translocation protein TolB; Provisional	99.54
KOG0280|consensus	339		99.53
PRK04792	448	tolB translocation protein TolB; Provisional	99.51
KOG1409|consensus	404		99.49
KOG1064|consensus	2439		99.48
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.48
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.47
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.47
KOG4547|consensus	541		99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
KOG0974|consensus	967		99.46
KOG4547|consensus	541		99.44
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.44
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.43
KOG2041|consensus	1189		99.43
PRK04792	448	tolB translocation protein TolB; Provisional	99.43
KOG2321|consensus	703		99.43
PRK01029	428	tolB translocation protein TolB; Provisional	99.43
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.42
KOG2314|consensus	698		99.42
PRK01029	428	tolB translocation protein TolB; Provisional	99.39
KOG0280|consensus	339		99.36
KOG1064|consensus	2439		99.35
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.34
KOG4190|consensus	1034		99.34
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.31
KOG4190|consensus	1034		99.29
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.23
KOG2314|consensus	698		99.21
KOG1354|consensus	433		99.19
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.19
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.19
KOG3914|consensus	390		99.19
KOG0309|consensus	1081		99.17
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.16
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.16
KOG1912|consensus	1062		99.16
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.15
KOG2315|consensus	566		99.13
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.13
KOG4532|consensus	344		99.13
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.12
KOG3914|consensus	390		99.12
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.11
KOG0309|consensus	1081		99.1
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.09
KOG4532|consensus	344		99.08
KOG0882|consensus	558		99.07
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.06
KOG2041|consensus	1189		99.04
COG4946	668	Uncharacterized protein related to the periplasmic	99.03
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.03
KOG4714|consensus	319		99.02
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.01
PRK04043	419	tolB translocation protein TolB; Provisional	99.01
KOG1832|consensus	1516		99.0
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.97
KOG1275|consensus	1118		98.97
PRK04043	419	tolB translocation protein TolB; Provisional	98.95
KOG4714|consensus	319		98.94
KOG1832|consensus	1516		98.92
KOG1912|consensus	1062		98.92
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.91
COG4946	668	Uncharacterized protein related to the periplasmic	98.89
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.86
KOG2695|consensus	425		98.85
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.84
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.81
KOG2695|consensus	425		98.79
KOG1275|consensus	1118		98.78
KOG2066|consensus	846		98.68
KOG1920|consensus	1265		98.66
KOG1645|consensus	463		98.66
PRK02888	635	nitrous-oxide reductase; Validated	98.65
KOG2114|consensus	933		98.61
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.6
KOG4649|consensus	354		98.57
KOG2066|consensus	846		98.55
KOG0882|consensus	558		98.53
KOG2114|consensus	933		98.52
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.5
KOG3617|consensus	1416		98.5
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.5
KOG4649|consensus	354		98.47
KOG1920|consensus	1265		98.44
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.43
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.42
KOG3617|consensus	1416		98.4
COG3391	381	Uncharacterized conserved protein [Function unknow	98.37
KOG3621|consensus	726		98.36
KOG1645|consensus	463		98.31
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.28
PRK02888	635	nitrous-oxide reductase; Validated	98.26
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.22
KOG1008|consensus	783		98.22
KOG1008|consensus	783		98.17
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.17
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.15
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.05
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.03
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.0
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.95
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.91
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.88
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.87
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.83
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.82
COG3391	381	Uncharacterized conserved protein [Function unknow	97.81
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	97.81
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.81
KOG4640|consensus	665		97.8
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.79
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.79
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.76
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.7
KOG3621|consensus	726		97.62
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.6
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.6
KOG4640|consensus	665		97.59
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.5
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.44
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.43
PRK13616	591	lipoprotein LpqB; Provisional	97.4
KOG2444|consensus	238		97.39
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.37
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.35
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.35
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.33
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.31
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.27
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.15
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.14
KOG2079|consensus	1206		97.13
KOG2395|consensus	644		97.1
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.08
KOG2444|consensus	238		97.07
PHA02713	557	hypothetical protein; Provisional	97.06
PRK13616	591	lipoprotein LpqB; Provisional	96.99
KOG2079|consensus	1206		96.98
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.98
KOG4499|consensus	310		96.88
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.87
PHA02713	557	hypothetical protein; Provisional	96.86
KOG2395|consensus	644		96.84
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.66
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.61
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.59
KOG4441|consensus	571		96.53
KOG1916|consensus	1283		96.49
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.48
KOG4441|consensus	571		96.35
KOG3630|consensus	1405		96.31
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.26
PRK10115	686	protease 2; Provisional	96.18
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.16
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.12
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.11
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.11
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.04
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.0
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.99
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.95
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.69
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.66
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.58
PHA03098	534	kelch-like protein; Provisional	95.56
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.55
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.33
PRK13684	334	Ycf48-like protein; Provisional	95.32
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.17
PHA02790	480	Kelch-like protein; Provisional	95.11
KOG4499|consensus	310		94.95
KOG3630|consensus	1405		94.89
COG5167	776	VID27 Protein involved in vacuole import and degra	94.85
KOG1897|consensus	1096		94.79
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.79
PRK10115	686	protease 2; Provisional	94.77
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.74
KOG2280|consensus	829		94.59
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.35
KOG1916|consensus	1283		93.92
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.81
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.65
PHA03098	534	kelch-like protein; Provisional	93.64
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.62
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.55
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.17
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.99
KOG1983|consensus	993		92.82
KOG1897|consensus	1096		92.77
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.7
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.69
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.44
PRK13684	334	Ycf48-like protein; Provisional	92.42
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.4
KOG4460|consensus	741		91.89
PHA02790	480	Kelch-like protein; Provisional	91.45
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.32
KOG2247|consensus	615		91.0
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.02
COG5276	370	Uncharacterized conserved protein [Function unknow	90.01
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.85
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.83
KOG4460|consensus	741		89.76
KOG2247|consensus	615		89.51
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	89.21
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.16
KOG1900|consensus	1311		89.1
PF12768	281	Rax2: Cortical protein marker for cell polarity	89.07
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.03
PF14727	418	PHTB1_N: PTHB1 N-terminus	88.96
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.91
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	88.9
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.78
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.76
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.54
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.43
COG5167	776	VID27 Protein involved in vacuole import and degra	87.96
COG4590	733	ABC-type uncharacterized transport system, permeas	87.88
KOG1900|consensus	1311		86.92
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	86.89
KOG2377|consensus	657		86.81
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	86.67
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	86.21
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.11
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	85.92
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.8
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.6
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	84.49
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.33
KOG2377|consensus	657		84.07
KOG1983|consensus	993		83.92
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.8
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	82.73
COG3292	671	Predicted periplasmic ligand-binding sensor domain	82.21
COG1520	370	FOG: WD40-like repeat [Function unknown]	82.2
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	82.0
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	81.64
KOG2659|consensus	228		80.62

>KOG0295|consensus

Probab=100.00  E-value=1.5e-80  Score=529.10  Aligned_cols=403  Identities=63%  Similarity=1.057  Sum_probs=387.2

Q ss_pred             CCCChhhHHHHHHHHHHHHHhcChHHHHHHHHhhcCCChhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy226            1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPAEVEKKYSGLLEKKWTSVIRLQKKVIELESKLSEAEKEYVEG   80 (406)
Q Consensus         1 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   80 (406)
                      |+|+++||+|+|++|+.|...++|.+....|.+++.+..+..+++.++++++|+++.|+||++++||.++++...+...+
T Consensus         3 ~v~~~~~~~ei~~aiadl~g~n~~~es~~i~~~~~~~~~~~~~~~g~ll~kkwtSv~rlqKki~~Les~l~~~~~el~~g   82 (406)
T KOG0295|consen    3 MVLSERQRDEINMAIADLSGSNGYSESDRIFHKEASLATEMRKKDGGLLEKKWTSVDRLQKKIRELESKLDETGDELIAG   82 (406)
T ss_pred             eeecccchHHHHHHHHhhhccccccccceeEeecCCCcccccccccceeeccccccchhHHHHHHHHhhhcccccccccC
Confidence            89999999999999999999999999999999999888888888999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcCCCCCCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCC
Q psy226           81 APTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG  160 (406)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g  160 (406)
                      .|....+.+..|+|+.++.+.+.||..+|+.+.|||+..++++++.|++|++||..+|+++..++||++.|.+++|+..|
T Consensus        83 ~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G  162 (406)
T KOG0295|consen   83 DPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG  162 (406)
T ss_pred             CCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCC-CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEE
Q psy226          161 KLLVSCSADMSLKLWDMST-YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK  239 (406)
Q Consensus       161 ~~l~sgs~d~~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~  239 (406)
                      ++|++++.|-.+++||..+ .++++.+.+|++.|.++.|.|.|++++++++|.+|+.|++.+|.|++++.+|+.||+.+.
T Consensus       163 k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~  242 (406)
T KOG0295|consen  163 KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVR  242 (406)
T ss_pred             cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEE
Confidence            9999999999999999986 778889999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEE
Q psy226          240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLW  319 (406)
Q Consensus       240 ~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lw  319 (406)
                      .+.||.++|+|+.|.++++|-+.+++....++.|+++|++++|.|......+....+..   .++.++++++.|++||+|
T Consensus       243 v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~---~~~~~l~s~SrDktIk~w  319 (406)
T KOG0295|consen  243 VNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST---NGGQVLGSGSRDKTIKIW  319 (406)
T ss_pred             ecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC---CCccEEEeecccceEEEE
Confidence            99999999999999999999999999999999999999999999987776666544432   257899999999999999


Q ss_pred             ECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCe
Q psy226          320 DVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKT  399 (406)
Q Consensus       320 d~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~  399 (406)
                      |+.+|.+++++.+|.+||+.++|+|.|+||+|+.+|++++|||++++++++++++|.++|++++|+.+.++++||+.|.+
T Consensus       320 dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt  399 (406)
T KOG0295|consen  320 DVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQT  399 (406)
T ss_pred             eccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeecC
Q psy226          400 VKVWECR  406 (406)
Q Consensus       400 v~iw~~~  406 (406)
                      +++|.||
T Consensus       400 ~KvwEcr  406 (406)
T KOG0295|consen  400 VKVWECR  406 (406)
T ss_pred             eeeeecC
Confidence            9999997

>KOG0272|consensus

Probab=100.00  E-value=3.2e-58  Score=399.42  Aligned_cols=284  Identities=33%  Similarity=0.526  Sum_probs=276.1

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCC--CCEEEEEeCCCcEEEEeCCCC
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQS--GKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~--g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      .|-..||..+.|++++..|||||.+|.++||+..+...+.++.||+..|.++.|+|.  +..|+||+.||++++|++++.
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            467889999999999999999999999999999999999999999999999999997  568999999999999999998


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEe
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS  260 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd  260 (406)
                      ..+..+.+|...|..++|+|+|++|+|++.|.+-++||+.++..+....||+..|.+++|.|||.+++||+.|..-||||
T Consensus       252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD  331 (459)
T KOG0272|consen  252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD  331 (459)
T ss_pred             cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence            89999999999999999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             CCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEE
Q psy226          261 LATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGV  340 (406)
Q Consensus       261 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l  340 (406)
                      ++++..+..+.+|..+|.+|.|+|                  +|..+|+|+.|++++|||++..++++++.+|.+.|+.|
T Consensus       332 lRtgr~im~L~gH~k~I~~V~fsP------------------NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~V  393 (459)
T KOG0272|consen  332 LRTGRCIMFLAGHIKEILSVAFSP------------------NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQV  393 (459)
T ss_pred             cccCcEEEEecccccceeeEeECC------------------CceEEeecCCCCcEEEeeecccccceecccccchhhhe
Confidence            999999999999999999999999                  68999999999999999999999999999999999999


Q ss_pred             EEcC-CCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          341 TFHP-GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       341 ~~s~-~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      .|+| .|.+|+|+|.|++++||...+..+++++.+|.+.|.++++++++++++|++.|.++|+|.
T Consensus       394 k~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  394 KYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999 789999999999999999999999999999999999999999999999999999999995

>KOG0271|consensus

Probab=100.00  E-value=1.7e-56  Score=384.17  Aligned_cols=307  Identities=31%  Similarity=0.548  Sum_probs=272.8

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ...+.||.++|.|++|+|++..||||+.|.++|+||+.+.....+.++|..-|.|++|+|||+.||+|+.||+|++||..
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCeEE-EEEecCCcceEEEEEec-----CCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC
Q psy226          179 TYQCL-KTMQGHDHNVTGVAFLP-----NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN  252 (406)
Q Consensus       179 ~~~~~-~~~~~h~~~v~~~~~~p-----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~  252 (406)
                      +++++ +.+.+|...|++++|.|     ..++|+++|.||+|+|||+..+.++..+.+|+..|+|+.|--+| ++++|+.
T Consensus       188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~  266 (480)
T KOG0271|consen  188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQ  266 (480)
T ss_pred             CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCC
Confidence            87664 67899999999999987     45689999999999999999999999999999999999997555 8999999


Q ss_pred             CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCcc--ccccccCCC----------------CCCCCCCEEEEEeCCC
Q psy226          253 DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASE--SISEAAGRP----------------PGQGGGPYLATGSRDK  314 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~----------------~~~~~~~~l~s~~~d~  314 (406)
                      |++|++|+...+....++++|.+.|..++.+.+-.-.  .+......+                .....+..|++|++|.
T Consensus       267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~  346 (480)
T KOG0271|consen  267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF  346 (480)
T ss_pred             CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence            9999999999998999999999999999876321000  000000000                0112457899999999


Q ss_pred             cEEEEECC-CCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEE
Q psy226          315 TIKLWDVG-SGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVT  393 (406)
Q Consensus       315 ~i~lwd~~-~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s  393 (406)
                      ++.+|+-. +.+++..+.+|...|..+.||||+++|||+|-|++|++||-.+|+.+.+|.+|-..|+.++|+.|.++|+|
T Consensus       347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS  426 (480)
T KOG0271|consen  347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS  426 (480)
T ss_pred             eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence            99999975 45588889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCeEEEeecC
Q psy226          394 GSVDKTVKVWECR  406 (406)
Q Consensus       394 gs~Dg~v~iw~~~  406 (406)
                      ||.|.++++|+++
T Consensus       427 ~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  427 GSKDSTLKVWDVR  439 (480)
T ss_pred             cCCCceEEEEEee
Confidence            9999999999975

>KOG0271|consensus

Probab=100.00  E-value=3.4e-54  Score=369.91  Aligned_cols=288  Identities=34%  Similarity=0.605  Sum_probs=268.5

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-EEEEecccccCeeeEEECC-----CCCEEEEEeCCCc
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE-YERALHGHLDSVQDIAFDQ-----SGKLLVSCSADMS  171 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~-~~~~~~~h~~~V~~l~~~~-----~g~~l~sgs~d~~  171 (406)
                      +.++.+||..-|.||+|+||+..||+|+.||+|++||..+|+ ..+.+.+|...|++++|.|     ..++|+++|.||+
T Consensus       149 p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~  228 (480)
T KOG0271|consen  149 PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS  228 (480)
T ss_pred             cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCC
Confidence            456789999999999999999999999999999999998876 4578999999999999965     5679999999999


Q ss_pred             EEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEEC----------
Q psy226          172 LKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVS----------  241 (406)
Q Consensus       172 i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~----------  241 (406)
                      |+|||+..+.++..+.||+.+|+|++|-- ..++++||.|++|++|+...|.+...+++|..+|+.++++          
T Consensus       229 vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf  307 (480)
T KOG0271|consen  229 VRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF  307 (480)
T ss_pred             EEEEEccCceEEEEeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence            99999999999999999999999999963 3589999999999999999999999999999999999887          


Q ss_pred             -CCC-------------------------CEEEEEeCCCeEEEEeCC-CccceeEEecCCceEEEEEeCCCCCccccccc
Q psy226          242 -PDG-------------------------TLLASCSNDHTARVWSLA-TKETKAELRGHDHTVECVAWAPGVASESISEA  294 (406)
Q Consensus       242 -~~~-------------------------~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  294 (406)
                       |.+                         +.+++|+.|.++.+|+.. +.+++..+.+|...|..+.|+|          
T Consensus       308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP----------  377 (480)
T KOG0271|consen  308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP----------  377 (480)
T ss_pred             ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC----------
Confidence             222                         359999999999999975 4457888999999999999999          


Q ss_pred             cCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc
Q psy226          295 AGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA  374 (406)
Q Consensus       295 ~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~  374 (406)
                              ++.++|+++.|+.|++||.++|+.+.+|.||-..|..++|+.|.++|+|||.|.+++|||+++.+....|.+
T Consensus       378 --------d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG  449 (480)
T KOG0271|consen  378 --------DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG  449 (480)
T ss_pred             --------CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC
Confidence                    588999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          375 HSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       375 h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      |...|.+++|+|||..+++|+.|..+++|.
T Consensus       450 h~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  450 HADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             CCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999995

>KOG0286|consensus

Probab=100.00  E-value=1.4e-51  Score=342.60  Aligned_cols=328  Identities=24%  Similarity=0.401  Sum_probs=285.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCcCCC--CCCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy226           57 IRLQKKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIP--RAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWD  134 (406)
Q Consensus        57 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd  134 (406)
                      ..|.++.++|..++.++.+......-... ....+-++  ....+.+|+||.+.|+++.|++|.++++++|.||.+.|||
T Consensus         5 ~~l~~Eae~L~~qi~~~r~~~~D~~l~q~-a~~~~~~~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWD   83 (343)
T KOG0286|consen    5 EQLRQEAEQLKNQIRDARKKLNDVTLAQI-AERLESVGRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWD   83 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-hhccccceeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEE
Confidence            34566666777777666554432210000 00000001  1123468999999999999999999999999999999999


Q ss_pred             cCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC------eEEEEEecCCcceEEEEEecCCCEEEEE
Q psy226          135 YETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY------QCLKTMQGHDHNVTGVAFLPNSDFVLSA  208 (406)
Q Consensus       135 ~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~p~~~~l~s~  208 (406)
                      .-+...+..++-...-|..++|+|.|+++|+|+.|+.+.||++.+.      +..+.+.+|...+.++.|.+ ...|+++
T Consensus        84 s~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~  162 (343)
T KOG0286|consen   84 SFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTG  162 (343)
T ss_pred             cccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEec
Confidence            9998888888888889999999999999999999999999999854      34567899999999999987 5678999


Q ss_pred             eCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCC
Q psy226          209 SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA  287 (406)
Q Consensus       209 s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  287 (406)
                      |.|.++.+||+++|+.+..|.+|...|.+++++| +++.|++|+-|+..++||++.+..++.+.+|+..|.++.|.|   
T Consensus       163 SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP---  239 (343)
T KOG0286|consen  163 SGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP---  239 (343)
T ss_pred             CCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc---
Confidence            9999999999999999999999999999999999 999999999999999999999999999999999999999999   


Q ss_pred             ccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC--CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy226          288 SESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH--DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h--~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~  365 (406)
                                     +|.-+++|++|++.|+||++..+.+..+...  ...|++++||..|++|++|..|.++.|||...
T Consensus       240 ---------------~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk  304 (343)
T KOG0286|consen  240 ---------------SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK  304 (343)
T ss_pred             ---------------CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccc
Confidence                           4777999999999999999999888777632  34799999999999999999999999999999


Q ss_pred             CccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          366 KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       366 ~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      ++.+..|.+|.+.|+||..+|||.-|+|||+|.+++||.
T Consensus       305 ~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  305 GERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999999999999999999999999999999994

>KOG0272|consensus

Probab=100.00  E-value=6.4e-50  Score=347.76  Aligned_cols=252  Identities=32%  Similarity=0.574  Sum_probs=242.5

Q ss_pred             CCCCceEEeccCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCc
Q psy226           94 PRAPEKFALSGHRSPVIKVIFHPV--FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMS  171 (406)
Q Consensus        94 ~~~~~~~~l~~h~~~V~~v~~~p~--~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~  171 (406)
                      |.-+...+|.||.+.|.++.|||.  +..+|||+.||+|++|++.+...+..+.+|...|..++|+|+|++|+|+|.|.+
T Consensus       205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t  284 (459)
T KOG0272|consen  205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDST  284 (459)
T ss_pred             CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccc
Confidence            445677889999999999999998  568999999999999999998999999999999999999999999999999999


Q ss_pred             EEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe
Q psy226          172 LKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       172 i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                      -++||+.+++.+....||...|.+++|+|+|.++++|+.|..-+|||+++|.++..+.+|..+|..++|+|+|.++||||
T Consensus       285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs  364 (459)
T KOG0272|consen  285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS  364 (459)
T ss_pred             hhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC
Confidence            99999999988888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q psy226          252 NDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI  331 (406)
Q Consensus       252 ~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~  331 (406)
                      .|++++|||++....+..+.+|..-|..|.|.|.                 .|.+|++++.|++++||...+.+++..+.
T Consensus       365 ~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~-----------------~g~fL~TasyD~t~kiWs~~~~~~~ksLa  427 (459)
T KOG0272|consen  365 SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQ-----------------EGYFLVTASYDNTVKIWSTRTWSPLKSLA  427 (459)
T ss_pred             CCCcEEEeeecccccceecccccchhhheEeccc-----------------CCeEEEEcccCcceeeecCCCcccchhhc
Confidence            9999999999999999999999999999999984                 58899999999999999999999999999


Q ss_pred             CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy226          332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD  362 (406)
Q Consensus       332 ~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd  362 (406)
                      ||++.|.+++++|++++++|++.|+++++|.
T Consensus       428 GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  428 GHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999999999995

>KOG0273|consensus

Probab=100.00  E-value=2.8e-47  Score=335.45  Aligned_cols=288  Identities=28%  Similarity=0.458  Sum_probs=264.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      ..|++++|+.+|.+||+|+.||.+++|+.. |.+..++..|.++|.+|.|+..|++|++++.|+++.+||..++...+.+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f  314 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF  314 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence            579999999999999999999999999965 5667788899999999999999999999999999999999999999999


Q ss_pred             ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc
Q psy226          187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET  266 (406)
Q Consensus       187 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~  266 (406)
                      ..|..+-..+.|-. ...+++++.|+.|+++.+....++.++.+|...|.++.|+|.|.+|++|+.|++++||.......
T Consensus       315 ~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~  393 (524)
T KOG0273|consen  315 EFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS  393 (524)
T ss_pred             eeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence            99998877888874 45789999999999999998899999999999999999999999999999999999999988888


Q ss_pred             eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCC
Q psy226          267 KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGG  346 (406)
Q Consensus       267 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g  346 (406)
                      ...+.+|...|..+.|+|......         ....+..+++++.|++|++||+..+.+++.|..|..+|.+|+|+|+|
T Consensus       394 ~~~l~~Hskei~t~~wsp~g~v~~---------n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g  464 (524)
T KOG0273|consen  394 VHDLQAHSKEIYTIKWSPTGPVTS---------NPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNG  464 (524)
T ss_pred             hhhhhhhccceeeEeecCCCCccC---------CCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCC
Confidence            999999999999999999643211         11246789999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          347 KYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       347 ~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +|+++|+.||.|.+|++.+++.++++.+. +.|..|+|+.+|.+|..+-.||.+.+-|+|
T Consensus       465 ~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  465 RYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             cEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            99999999999999999999999999765 469999999999999999999999998875

>KOG0279|consensus

Probab=100.00  E-value=3.2e-46  Score=308.85  Aligned_cols=286  Identities=30%  Similarity=0.551  Sum_probs=255.1

Q ss_pred             EEeccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC-----CcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEE
Q psy226          100 FALSGHRSPVIKVIFHPV-FSLMASCSEDATIRLWDYET-----GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK  173 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~-~~~latgs~dg~v~vwd~~~-----~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~  173 (406)
                      -+|.||++.|+.++..+. ...+.+++.|.++.+|++..     |...+.+.||...|..++.+++|++.+++|.|++++
T Consensus         9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr   88 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR   88 (315)
T ss_pred             eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence            368999999999999988 56899999999999998654     566889999999999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC--CccEEEEEECCC--CCEEEE
Q psy226          174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH--REWVRQIKVSPD--GTLLAS  249 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~--~~~l~s  249 (406)
                      +||+.+++..+.+.||...|.+++|+|+...+++||.|++|++||+..+ |..++..+  ++||.++.|+|+  ..+|++
T Consensus        89 lWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs  167 (315)
T KOG0279|consen   89 LWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVS  167 (315)
T ss_pred             EEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence            9999999999999999999999999999999999999999999998654 55555544  899999999998  679999


Q ss_pred             EeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q psy226          250 CSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFT  329 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~  329 (406)
                      ++.|++|++||+++.+....+.+|.+.+..++++|                  +|..+++|+.||.+.+||++.++.++.
T Consensus       168 ~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp------------------DGslcasGgkdg~~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  168 ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP------------------DGSLCASGGKDGEAMLWDLNEGKNLYS  229 (315)
T ss_pred             ccCCceEEEEccCCcchhhccccccccEEEEEECC------------------CCCEEecCCCCceEEEEEccCCceeEe
Confidence            99999999999999999999999999999999999                  478999999999999999999999877


Q ss_pred             EeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc----c-----cceEEEEEEeCCCCEEEEeeCCCeE
Q psy226          330 LIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA----H-----SHFVTSLDFHRAHPYVVTGSVDKTV  400 (406)
Q Consensus       330 ~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~----h-----~~~v~~l~~~~~~~~l~sgs~Dg~v  400 (406)
                      +. |...|.+++|+|+...|. ...+..|+|||+.++.++.+++.    .     .....+++|+++|..|.+|-.|+.|
T Consensus       230 l~-a~~~v~sl~fspnrywL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i  307 (315)
T KOG0279|consen  230 LE-AFDIVNSLCFSPNRYWLC-AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI  307 (315)
T ss_pred             cc-CCCeEeeEEecCCceeEe-eccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence            64 677899999999865554 44566799999999888776642    1     2246789999999999999999999


Q ss_pred             EEeecC
Q psy226          401 KVWECR  406 (406)
Q Consensus       401 ~iw~~~  406 (406)
                      ++|.++
T Consensus       308 rv~qv~  313 (315)
T KOG0279|consen  308 RVWQVA  313 (315)
T ss_pred             EEEEee
Confidence            999863

>KOG0285|consensus

Probab=100.00  E-value=9.5e-46  Score=315.50  Aligned_cols=296  Identities=28%  Similarity=0.502  Sum_probs=272.7

Q ss_pred             CCcCCCCCCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeC
Q psy226           89 PTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSA  168 (406)
Q Consensus        89 ~~~~~~~~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~  168 (406)
                      .++|.........++||.+-|.||++.|....++||+.|++++|||+.+|++..++.||...|..+++++.-.+|++++.
T Consensus       134 rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  134 RPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             CccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC
Confidence            35666666666678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEE
Q psy226          169 DMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLA  248 (406)
Q Consensus       169 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  248 (406)
                      |+.|+.||++..+.++.+.||-+.|.+++.+|.-+.|++|++|.++++||+++...+..+.||...|..+.+.|-...++
T Consensus       214 dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi  293 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI  293 (460)
T ss_pred             CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             EEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy226          249 SCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF  328 (406)
Q Consensus       249 s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~  328 (406)
                      +|+.|++|++||++.++....+..|...+.+++.+|.                  ...+|+++.|+ |+-|++..|..+.
T Consensus       294 t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~------------------e~~fASas~dn-ik~w~~p~g~f~~  354 (460)
T KOG0285|consen  294 TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPK------------------ENLFASASPDN-IKQWKLPEGEFLQ  354 (460)
T ss_pred             EecCCceEEEeeeccCceeEeeecccceeeEEecCCc------------------hhhhhccCCcc-ceeccCCccchhh
Confidence            9999999999999999999999999999999999984                  34577887775 8999999999999


Q ss_pred             EEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc--------ccceEEEEEEeCCCCEEEEeeCCCeE
Q psy226          329 TLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA--------HSHFVTSLDFHRAHPYVVTGSVDKTV  400 (406)
Q Consensus       329 ~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~--------h~~~v~~l~~~~~~~~l~sgs~Dg~v  400 (406)
                      .+.+|...|.+++...|| ++++|+++|.|.+||.+++...+.++.        -...|.+.+|+..+..|+||..|.+|
T Consensus       355 nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtI  433 (460)
T KOG0285|consen  355 NLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTI  433 (460)
T ss_pred             ccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcce
Confidence            999999999999998775 778999999999999999877665532        23458999999999999999999999


Q ss_pred             EEee
Q psy226          401 KVWE  404 (406)
Q Consensus       401 ~iw~  404 (406)
                      ++|.
T Consensus       434 k~~k  437 (460)
T KOG0285|consen  434 KMYK  437 (460)
T ss_pred             EEEe
Confidence            9996

>KOG0265|consensus

Probab=100.00  E-value=3.7e-44  Score=299.39  Aligned_cols=285  Identities=26%  Similarity=0.461  Sum_probs=257.0

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc-CCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDY-ETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~-~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ..+.||.+.|+++.|+|++++||||+.|..|.+|+. ..-+....+++|.+.|..+.|.+++..|++++.|.+|+.||++
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence            357899999999999999999999999999999994 4445566788999999999999999999999999999999999


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTAR  257 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~  257 (406)
                      ++++.+.+++|..-|.++.-..-|. ++.+|+.|+++++||+++..+++++. .+-+++++.|..++..+.+|+.|+.|+
T Consensus       121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ik  199 (338)
T KOG0265|consen  121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIK  199 (338)
T ss_pred             cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCcee
Confidence            9999999999999999988443343 67789999999999999988888774 345689999999999999999999999


Q ss_pred             EEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC----CeEEEEEeCC
Q psy226          258 VWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS----GSLLFTLIGH  333 (406)
Q Consensus       258 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~----~~~~~~~~~h  333 (406)
                      +||++.......+.+|..+|..+..+|                  .|.++.+-+.|.++++||++.    .+++..+.+|
T Consensus       200 vWd~r~~d~~~~lsGh~DtIt~lsls~------------------~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~  261 (338)
T KOG0265|consen  200 VWDLRKNDGLYTLSGHADTITGLSLSR------------------YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH  261 (338)
T ss_pred             eeccccCcceEEeecccCceeeEEecc------------------CCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence            999999999999999999999999887                  477899999999999999874    4568888876


Q ss_pred             Cc----CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEe
Q psy226          334 DN----WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW  403 (406)
Q Consensus       334 ~~----~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw  403 (406)
                      ..    ....++|+|++.++.+|+.|+.+++||......+..|.+|.+.|++++|+|..++|.+++.|.+|.+=
T Consensus       262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             hhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence            43    35678999999999999999999999999989999999999999999999999999999999999863

>KOG0284|consensus

Probab=100.00  E-value=6.9e-46  Score=321.26  Aligned_cols=281  Identities=29%  Similarity=0.488  Sum_probs=258.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      -..+|+.|.|.|+|+.|++|+..|.+.+|+..+-.++..+..|..+|+++.|+++|..+++|+.+|.|++|+..- +.++
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk  173 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVK  173 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhH
Confidence            456899999999999999999999999999877777777889999999999999999999999999999998754 3344


Q ss_pred             EEecCC-cceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy226          185 TMQGHD-HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT  263 (406)
Q Consensus       185 ~~~~h~-~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~  263 (406)
                      .++.|. ..|++++|+|+...+++||.||+|+|||.........+.+|.-.|.+++|+|...++++||.|..|++||.++
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            555554 8999999999999999999999999999999888888999999999999999999999999999999999999


Q ss_pred             ccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEc
Q psy226          264 KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFH  343 (406)
Q Consensus       264 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s  343 (406)
                      ++++.++.+|...|..+.|.|                  ++++|+++|.|..++++|+++-+.++++.+|...|+++.|+
T Consensus       254 g~cl~tlh~HKntVl~~~f~~------------------n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~Wh  315 (464)
T KOG0284|consen  254 GSCLATLHGHKNTVLAVKFNP------------------NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWH  315 (464)
T ss_pred             cchhhhhhhccceEEEEEEcC------------------CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccc
Confidence            999999999999999999998                  46899999999999999999888999999999999999999


Q ss_pred             CC-CCEEEEEeCCCeEEEEeCCCCccceee-ccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          344 PG-GKYLVSCGDDKTLRVWDTANKRNMKTL-EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       344 ~~-g~~l~sgs~d~~i~vwd~~~~~~~~~l-~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      |- ...|.+|+.||.|..|.+...+.+..+ .+|...|++|+|||-|.+|++|+.|.++++|.
T Consensus       316 P~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  316 PLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             cccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            94 567889999999999999866666665 57999999999999999999999999999995

>KOG0266|consensus

Probab=100.00  E-value=3.2e-43  Score=335.44  Aligned_cols=289  Identities=37%  Similarity=0.656  Sum_probs=266.4

Q ss_pred             eEEeccC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEE
Q psy226           99 KFALSGH-RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE--YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW  175 (406)
Q Consensus        99 ~~~l~~h-~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vw  175 (406)
                      ...+.+| ...|+|+.|+|+|..+++++.|+.+++|+..+++  ....+.+|...|++++|+|+|.++++|+.|+++++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            4455555 7899999999999999999999999999998877  777788999999999999999999999999999999


Q ss_pred             eC-CCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          176 DM-STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       176 d~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      |+ ..+.+++++.+|...|++++|+|+++++++|+.|++|++||++++.++..+.+|.+.|.+++|++++++|++++.|+
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~  310 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG  310 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence            99 56689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCcc--ceeEEecCCce--EEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy226          255 TARVWSLATKE--TKAELRGHDHT--VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL  330 (406)
Q Consensus       255 ~v~vwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~  330 (406)
                      .|++||+.++.  ....+..+...  +.++.|+|                  ++.++++++.|+.+++||++.+.++..+
T Consensus       311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp------------------~~~~ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP------------------NGKYLLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             cEEEEECCCCceeeeecccCCCCCCceeEEEECC------------------CCcEEEEecCCCeEEEEEccCCcceeee
Confidence            99999999988  45677777665  89999998                  5889999999999999999999999999


Q ss_pred             eCCCcC---EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc-cceEEEEEEeCCCCEEEEee--CCCeEEEee
Q psy226          331 IGHDNW---VRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH-SHFVTSLDFHRAHPYVVTGS--VDKTVKVWE  404 (406)
Q Consensus       331 ~~h~~~---v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h-~~~v~~l~~~~~~~~l~sgs--~Dg~v~iw~  404 (406)
                      .+|...   +.+...++.++++++|+.|+.|++||..++..+..+.+| ...+..++++|..+++++++  .|+.+++|.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            999875   344456789999999999999999999999999999999 88999999999999999998  799999997


Q ss_pred             c
Q psy226          405 C  405 (406)
Q Consensus       405 ~  405 (406)
                      .
T Consensus       453 ~  453 (456)
T KOG0266|consen  453 Y  453 (456)
T ss_pred             C
Confidence            4

>KOG0263|consensus

Probab=100.00  E-value=1.2e-44  Score=337.67  Aligned_cols=273  Identities=30%  Similarity=0.573  Sum_probs=247.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      -...++|..|++++++||.|-.|-.|++|.+...++. .+++       ..   +...+=+++.|-.+.+.|-.+....+
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~-------~~---~l~~~d~~sad~~~~~~D~~~~~~~~  445 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK-KLKD-------AS---DLSNIDTESADVDVDMLDDDSSGTSR  445 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhc-cccc-------hh---hhccccccccchhhhhccccCCceeE
Confidence            3457999999999999999999999999998765422 2221       11   11223355666667777777777778


Q ss_pred             EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCc
Q psy226          185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK  264 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~  264 (406)
                      ++.||.++|.++.|+|+.++|+++|.|+++|+|.+.+..++..+.||..+|..+.|+|.|.+|||++.|++.++|.....
T Consensus       446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~  525 (707)
T KOG0263|consen  446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN  525 (707)
T ss_pred             EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcC
Q psy226          265 ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHP  344 (406)
Q Consensus       265 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~  344 (406)
                      .+...+.+|...|.|+.|+|                  +..|+++||.|.+||+||+.+|..++.|.||.++|.+++|||
T Consensus       526 ~PlRifaghlsDV~cv~FHP------------------Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp  587 (707)
T KOG0263|consen  526 KPLRIFAGHLSDVDCVSFHP------------------NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP  587 (707)
T ss_pred             CchhhhcccccccceEEECC------------------cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC
Confidence            99999999999999999999                  567999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          345 GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       345 ~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +|++|++|+.||.|.+||+.++..+..+.+|++.|.+|.|+.+|..||+||.|.+|++||+.
T Consensus       588 ~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  588 CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            99999999999999999999999999999999999999999999999999999999999963

>KOG0296|consensus

Probab=100.00  E-value=4.2e-43  Score=300.20  Aligned_cols=308  Identities=24%  Similarity=0.379  Sum_probs=260.6

Q ss_pred             CceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226           97 PEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus        97 ~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      .....+..|.++|++++.||+.+++|||+.|....+|+..+|+....+.+|++.|+++.|+.+|.+||||..+|.|+||.
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeE
Q psy226          177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTA  256 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v  256 (406)
                      .+++.....+...-..|.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.||+.++++=.|.|+|+.++++..||+|
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti  214 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI  214 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence            99998888877666788899999999999999999999999999988889999999999999999999999999999999


Q ss_pred             EEEeCCCccceeEEecCCc-eEEEEEe------------------------------CCCCCc-----cccccccCCCCC
Q psy226          257 RVWSLATKETKAELRGHDH-TVECVAW------------------------------APGVAS-----ESISEAAGRPPG  300 (406)
Q Consensus       257 ~vwd~~~~~~~~~~~~~~~-~v~~~~~------------------------------~~~~~~-----~~~~~~~~~~~~  300 (406)
                      ++|++.++.+...+..-++ ...++.+                              .|....     ..........+.
T Consensus       215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~  294 (399)
T KOG0296|consen  215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS  294 (399)
T ss_pred             EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence            9999999988776652110 0011111                              000000     000000001112


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEE
Q psy226          301 QGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVT  380 (406)
Q Consensus       301 ~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~  380 (406)
                      ...-+++|+|+-||+|.|||+...++ +..-.|...|..+.|-+ ..+|++++.||.|+.||.++|+++.++.+|...|.
T Consensus       295 ss~lpL~A~G~vdG~i~iyD~a~~~~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il  372 (399)
T KOG0296|consen  295 SSKLPLAACGSVDGTIAIYDLAASTL-RHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGIL  372 (399)
T ss_pred             ccccchhhcccccceEEEEecccchh-heeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchhee
Confidence            23456889999999999999977554 34445888899999998 78999999999999999999999999999999999


Q ss_pred             EEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          381 SLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       381 ~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +++.+|++++++|+|.|++.+||++.
T Consensus       373 ~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  373 DFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999999999873

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.8e-42  Score=308.70  Aligned_cols=286  Identities=44%  Similarity=0.763  Sum_probs=267.2

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      .+.+|.++|++++|+|++++|++++.||.|++||+.+++....+..|...+..+.|++++++|++++.|+.|++||+.++
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            46789999999999999999999999999999999998888888899999999999999999999999999999999988


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEe
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS  260 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd  260 (406)
                      +....+..|...+.++.|+|++.++++++.|+.|++||+.++.....+..|...+.+++|+|++.++++++.|+.+++||
T Consensus        84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d  163 (289)
T cd00200          84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD  163 (289)
T ss_pred             cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence            88888889999999999999988888888899999999999988899999999999999999999999988899999999


Q ss_pred             CCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEE
Q psy226          261 LATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGV  340 (406)
Q Consensus       261 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l  340 (406)
                      +++.+....+..|...+.++.|.|+                  +..+++++.|+.|++||++.++.+..+..|...+.++
T Consensus       164 ~~~~~~~~~~~~~~~~i~~~~~~~~------------------~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~  225 (289)
T cd00200         164 LRTGKCVATLTGHTGEVNSVAFSPD------------------GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV  225 (289)
T ss_pred             ccccccceeEecCccccceEEECCC------------------cCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE
Confidence            9988888888899989999999883                  5678888889999999999999988888899999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          341 TFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       341 ~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      .|+|++.++++++.|+.|++||+.+++....+..|...|.+++|+|++.+|++++.||.|++|+
T Consensus       226 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            9999999999988899999999998888888889999999999999999999999999999996

>KOG0282|consensus

Probab=100.00  E-value=3.6e-44  Score=316.92  Aligned_cols=288  Identities=27%  Similarity=0.470  Sum_probs=255.9

Q ss_pred             ceEEeccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEE
Q psy226           98 EKFALSGHRSPVIKVIFHP-VFSLMASCSEDATIRLWDYET-GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW  175 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p-~~~~latgs~dg~v~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vw  175 (406)
                      ..+++.||+..|+++.|.| .+.+|++|+.|+.|+||++-+ +++++++.||..+|.+++|+++|..++++|.|+++++|
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW  285 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence            3567899999999999999 789999999999999999876 88999999999999999999999999999999999999


Q ss_pred             eCCCCeEEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          176 DMSTYQCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       176 d~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      |+++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-..|..+.|-++|..+++.+.|+
T Consensus       286 DtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk  364 (503)
T KOG0282|consen  286 DTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK  364 (503)
T ss_pred             ccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence            999999988875 34578999999998 7899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCccceeEE-ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe---EEEEE
Q psy226          255 TARVWSLATKETKAEL-RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS---LLFTL  330 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~---~~~~~  330 (406)
                      +++||+.+.+-++... ..+.+...++...|                  ++++++.-+.|+.|.++.+...-   .-..|
T Consensus       365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P------------------~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f  426 (503)
T KOG0282|consen  365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHP------------------NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF  426 (503)
T ss_pred             cEEEEEcCCCccchhhcchhhccCcceecCC------------------CCCeehhhccCceEEEEecccccccCHhhhh
Confidence            9999999876654432 23445566777776                  57899999999999999865321   23456


Q ss_pred             eCC--CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCC-CEEEEeeCCCeEEEee
Q psy226          331 IGH--DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAH-PYVVTGSVDKTVKVWE  404 (406)
Q Consensus       331 ~~h--~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~-~~l~sgs~Dg~v~iw~  404 (406)
                      .||  .+.-..+.|||||++|++|+.||.+.+||.++.+.+..+++|.+.+..+.|||.. ..|||||+||.|++||
T Consensus       427 eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  427 EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            777  4567889999999999999999999999999999999999999999999999976 4789999999999997

>KOG0645|consensus

Probab=100.00  E-value=1.4e-41  Score=280.29  Aligned_cols=284  Identities=29%  Similarity=0.530  Sum_probs=243.9

Q ss_pred             ceEEeccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc---EEEEe-cccccCeeeEEECCCCCEEEEEeCCCcE
Q psy226           98 EKFALSGHRSPVIKVIFHPV-FSLMASCSEDATIRLWDYETGE---YERAL-HGHLDSVQDIAFDQSGKLLVSCSADMSL  172 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~-~~~latgs~dg~v~vwd~~~~~---~~~~~-~~h~~~V~~l~~~~~g~~l~sgs~d~~i  172 (406)
                      ....++||.+.|..++|||- |.+|||||.|..|++|+...+.   +...+ .+|+..|++++|+|.|++|++||-|.++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            34568899999999999998 8999999999999999988532   22233 3799999999999999999999999999


Q ss_pred             EEEeCC--CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC---eEEEEeecCCccEEEEEECCCCCEE
Q psy226          173 KLWDMS--TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG---YCVKTLTGHREWVRQIKVSPDGTLL  247 (406)
Q Consensus       173 ~vwd~~--~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l  247 (406)
                      .||.-.  .++++.++.||+..|.+++|+++|++|++||+|++|-||.+..+   .|...+++|...|..+.|+|...+|
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL  165 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL  165 (312)
T ss_pred             EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence            999654  46889999999999999999999999999999999999998743   5788899999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCC---ccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q psy226          248 ASCSNDHTARVWSLAT---KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG  324 (406)
Q Consensus       248 ~s~~~d~~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~  324 (406)
                      ++++.|.+|++|+-..   -...+.+.+|...|.+++|.|                  .|..|++++.|++++||-..+.
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~------------------~G~rl~s~sdD~tv~Iw~~~~~  227 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN------------------IGSRLVSCSDDGTVSIWRLYTD  227 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC------------------CCceEEEecCCcceEeeeeccC
Confidence            9999999999998652   356889999999999999988                  4678999999999999986532


Q ss_pred             eEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------c-ceeeccccceEEEEEEeCC-CCEEEEeeC
Q psy226          325 SLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR------N-MKTLEAHSHFVTSLDFHRA-HPYVVTGSV  396 (406)
Q Consensus       325 ~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~------~-~~~l~~h~~~v~~l~~~~~-~~~l~sgs~  396 (406)
                      -.    .-|...+..+.|.  ...|+|++.|+.|++|......      . .+.-..|...|++++|+|. ..+|++||.
T Consensus       228 ~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D  301 (312)
T KOG0645|consen  228 LS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD  301 (312)
T ss_pred             cc----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCC
Confidence            11    2367789999998  4589999999999999765421      1 1223578889999999994 678999999


Q ss_pred             CCeEEEeec
Q psy226          397 DKTVKVWEC  405 (406)
Q Consensus       397 Dg~v~iw~~  405 (406)
                      ||.|++|.+
T Consensus       302 DG~v~~W~l  310 (312)
T KOG0645|consen  302 DGIVNFWEL  310 (312)
T ss_pred             CceEEEEEe
Confidence            999999986

>KOG0315|consensus

Probab=100.00  E-value=4.2e-42  Score=279.97  Aligned_cols=268  Identities=25%  Similarity=0.486  Sum_probs=238.1

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEecCCcceEEE
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ--CLKTMQGHDHNVTGV  196 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~  196 (406)
                      -+|||+|.|-+||+|...+|...++++.....|+.+.+.|+++.|++++. -.||+||+.++.  ++.++.+|+..|+++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            47999999999999999999999999977788999999999999998876 479999998754  588999999999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe-cCCc
Q psy226          197 AFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR-GHDH  275 (406)
Q Consensus       197 ~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~  275 (406)
                      .|..+|+.+++||.||+++|||++...+.+.+ .|..+|+++..+|+...|++|..+|.|++||+........+. ....
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            99999999999999999999999996665555 467999999999999999999999999999998765544433 3346


Q ss_pred             eEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC------eEEEEEeCCCcCEEEEEEcCCCCEE
Q psy226          276 TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG------SLLFTLIGHDNWVRGVTFHPGGKYL  349 (406)
Q Consensus       276 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~------~~~~~~~~h~~~v~~l~~s~~g~~l  349 (406)
                      +|.++...|                  +|.+++.+...|...+|++-..      .++..+..|...+..+.+||++++|
T Consensus       169 ~i~sl~v~~------------------dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  169 SIQSLTVMP------------------DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             ceeeEEEcC------------------CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEE
Confidence            778888777                  5789999999999999998653      3566788999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCC-ccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          350 VSCGDDKTLRVWDTANK-RNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       350 ~sgs~d~~i~vwd~~~~-~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +++|.|.+++||++++. +....+++|...+.+.+|+.++.||+||+.|+.+++|++.
T Consensus       231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             EeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            99999999999999887 6667789999999999999999999999999999999963

>KOG0276|consensus

Probab=100.00  E-value=7.1e-43  Score=317.10  Aligned_cols=286  Identities=31%  Similarity=0.536  Sum_probs=269.5

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      .+..|+..|-+|.|||..+.++++-..|.|.|||.++..+++.+.-..-+|++..|-+.-+.+++|+.|..|+||+..++
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~   87 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG   87 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence            34558889999999999999999999999999999999999999888889999999999999999999999999999999


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe-EEEEeecCCccEEEEEECC-CCCEEEEEeCCCeEEE
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY-CVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARV  258 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~v~v  258 (406)
                      +.++.+..|.+.|.+++.+|...+++++|+|-+|++||-..+. |.+++.||...|++++|+| |.+.||+++.|++|+|
T Consensus        88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV  167 (794)
T KOG0276|consen   88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV  167 (794)
T ss_pred             eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence            9999999999999999999999999999999999999998764 7889999999999999999 6689999999999999


Q ss_pred             EeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEE
Q psy226          259 WSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVR  338 (406)
Q Consensus       259 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~  338 (406)
                      |.+.+..+..++.+|+..|.|+.|.++                ++.+||++|++|.+|+|||.++..|+.++.||.+.|+
T Consensus       168 Wslgs~~~nfTl~gHekGVN~Vdyy~~----------------gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs  231 (794)
T KOG0276|consen  168 WSLGSPHPNFTLEGHEKGVNCVDYYTG----------------GDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVS  231 (794)
T ss_pred             EEcCCCCCceeeeccccCcceEEeccC----------------CCcceEEecCCCceEEEeecchHHHHHHhhcccccce
Confidence            999999999999999999999999885                2457999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEE
Q psy226          339 GVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKV  402 (406)
Q Consensus       339 ~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~i  402 (406)
                      .+.|+|.-..++|||+||++|||+..+.+..++++-.-..|.|++-.+.+..++.|...|.|.+
T Consensus       232 ~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  232 FVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             EEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            9999999999999999999999999999999999888889999999999999999998887754

>KOG0279|consensus

Probab=100.00  E-value=1.9e-41  Score=280.48  Aligned_cols=247  Identities=30%  Similarity=0.554  Sum_probs=222.3

Q ss_pred             EEEEecccccCeeeEEECCC-CCEEEEEeCCCcEEEEeCC-----CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCc
Q psy226          140 YERALHGHLDSVQDIAFDQS-GKLLVSCSADMSLKLWDMS-----TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT  213 (406)
Q Consensus       140 ~~~~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~vwd~~-----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~  213 (406)
                      +..++++|++.|+.++..+. ...+++++.|.++.+|++.     .|..++.+.||++.|..+..+++|++.+++|.|++
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~   86 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT   86 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence            45678999999999999886 4688999999999999875     46778999999999999999999999999999999


Q ss_pred             EEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecC--CceEEEEEeCCCCCcccc
Q psy226          214 IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH--DHTVECVAWAPGVASESI  291 (406)
Q Consensus       214 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~  291 (406)
                      +++||+.+|+..+.|.+|...|.+++|+||.+.+++|+.|+++++|+.... +..++..+  ..-|.|+.|+|..     
T Consensus        87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~-----  160 (315)
T KOG0279|consen   87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNE-----  160 (315)
T ss_pred             EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCC-----
Confidence            999999999999999999999999999999999999999999999998654 33344333  6789999999953     


Q ss_pred             ccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccee
Q psy226          292 SEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKT  371 (406)
Q Consensus       292 ~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~  371 (406)
                                 ..+++++++.|++|++||+++.+....+.||.+.++.+++||||..+++|+.||.+.+||++.++++++
T Consensus       161 -----------~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  161 -----------SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS  229 (315)
T ss_pred             -----------CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence                       356899999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          372 LEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       372 l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +. |...|.+++|+|+...|+.+. +..|+|||+
T Consensus       230 l~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl  261 (315)
T KOG0279|consen  230 LE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDL  261 (315)
T ss_pred             cc-CCCeEeeEEecCCceeEeecc-CCceEEEec
Confidence            86 567899999999987776554 556999996

>KOG0281|consensus

Probab=100.00  E-value=9.2e-44  Score=302.38  Aligned_cols=269  Identities=31%  Similarity=0.557  Sum_probs=242.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      ....|+|+.+.  ...+++|..|++|+|||.++-...+.+.||++.|.|+.|..  +.|++||+|.+|++||+++++++.
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence            34679999885  46789999999999999999999999999999999999954  599999999999999999999999


Q ss_pred             EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe---EEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy226          185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY---CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSL  261 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~  261 (406)
                      ++-+|..+|..+.|+  +.+++++|.|.++.+||+....   +.+.+.||...|+.+.|+  .+++++++.|.+|++|++
T Consensus       272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~  347 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST  347 (499)
T ss_pred             HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence            999999999999996  5699999999999999997653   345578999999999986  459999999999999999


Q ss_pred             CCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEE
Q psy226          262 ATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT  341 (406)
Q Consensus       262 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~  341 (406)
                      .+.+.+.++.+|...|-|+.+                    .++++++|+.|.+||+||+..|.+++.+.||+.-|+++.
T Consensus       348 st~efvRtl~gHkRGIAClQY--------------------r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciR  407 (499)
T KOG0281|consen  348 STCEFVRTLNGHKRGIACLQY--------------------RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR  407 (499)
T ss_pred             cceeeehhhhcccccceehhc--------------------cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhhee
Confidence            999999999999999999876                    478999999999999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCc---------cceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          342 FHPGGKYLVSCGDDKTLRVWDTANKR---------NMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       342 ~s~~g~~l~sgs~d~~i~vwd~~~~~---------~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |+  .+.+++|+.||+|+|||+..+.         ++.++..|++.|..+.|.  ...+++++.|.+|.|||.
T Consensus       408 Fd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  408 FD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDF  476 (499)
T ss_pred             ec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence            95  5789999999999999987542         456667799999999995  467999999999999996

>KOG0275|consensus

Probab=100.00  E-value=2.3e-42  Score=291.49  Aligned_cols=283  Identities=27%  Similarity=0.452  Sum_probs=255.0

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe--------cccccCeeeEEECCCCCEEEEEeCCCcEEEE
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERAL--------HGHLDSVQDIAFDQSGKLLVSCSADMSLKLW  175 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~--------~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vw  175 (406)
                      |..+-+-|..|+||+.+|++||.||-|.|||+.+|++.+-+        -.+.++|.|+.|+.|...|++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            45667889999999999999999999999999999865543        3467899999999999999999999999999


Q ss_pred             eCCCCeEEEEEe-cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          176 DMSTYQCLKTMQ-GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       176 d~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      .+.+|+|++.+. .|...|+|+.|+.|+..+++++.|.++++.-+.+|++++.+.||+.+|+...|.+||.++++++.||
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg  370 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG  370 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence            999999998886 8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCccceeEEec--CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy226          255 TARVWSLATKETKAELRG--HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~  332 (406)
                      +|++|+..+.++..+++.  .+.+|.++...|.                 +...++++...++|.|.++ .|+.++.|..
T Consensus       371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK-----------------npeh~iVCNrsntv~imn~-qGQvVrsfsS  432 (508)
T KOG0275|consen  371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK-----------------NPEHFIVCNRSNTVYIMNM-QGQVVRSFSS  432 (508)
T ss_pred             cEEEecCcchhhhhhccCCCCcccceeEEEcCC-----------------CCceEEEEcCCCeEEEEec-cceEEeeecc
Confidence            999999999988887764  4456777777664                 3457889999999999998 5788888754


Q ss_pred             C---CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          333 H---DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       333 h---~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      .   .+...+.+.||.|.++.+.++|+.++.|.+.+|+...++..|...|..++-||..++||+-+.||.+++|.
T Consensus       433 GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  433 GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            2   23455667899999999999999999999999999999999999999999999999999999999999995

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.1e-40  Score=334.51  Aligned_cols=282  Identities=20%  Similarity=0.347  Sum_probs=243.5

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----c----EEEEecccccCeeeEEECCC-CCEEEEEeCCCcEE
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG----E----YERALHGHLDSVQDIAFDQS-GKLLVSCSADMSLK  173 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~----~----~~~~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~  173 (406)
                      .+|.+.|++++|+|++.+||||+.|++|+|||..+.    .    ....+. +...|.+++|++. +.+|++++.||+|+
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            358999999999999999999999999999997542    1    112222 3467999999874 78999999999999


Q ss_pred             EEeCCCCeEEEEEecCCcceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEEC-CCCCEEEEEe
Q psy226          174 LWDMSTYQCLKTMQGHDHNVTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVS-PDGTLLASCS  251 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~s~~  251 (406)
                      +||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||++++.++..+..+ ..+.++.|+ ++|.+|++|+
T Consensus       559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs  637 (793)
T PLN00181        559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGS  637 (793)
T ss_pred             EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEe
Confidence            999999999999999999999999997 7789999999999999999999988888765 578899994 5799999999


Q ss_pred             CCCeEEEEeCCCcc-ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC------C
Q psy226          252 NDHTARVWSLATKE-TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS------G  324 (406)
Q Consensus       252 ~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~------~  324 (406)
                      .|+.|++||+++.. ....+.+|...|.++.|.+                   +.++++++.|++|++||++.      .
T Consensus       638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-------------------~~~lvs~s~D~~ikiWd~~~~~~~~~~  698 (793)
T PLN00181        638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-------------------SSTLVSSSTDNTLKLWDLSMSISGINE  698 (793)
T ss_pred             CCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-------------------CCEEEEEECCCEEEEEeCCCCccccCC
Confidence            99999999998765 4667889999999999963                   45799999999999999974      3


Q ss_pred             eEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccee-------------eccccceEEEEEEeCCCCEE
Q psy226          325 SLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKT-------------LEAHSHFVTSLDFHRAHPYV  391 (406)
Q Consensus       325 ~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~-------------l~~h~~~v~~l~~~~~~~~l  391 (406)
                      .++..+.+|...+..++|+|++.+|++|+.|+.|++|+......+..             ...|...|.+++|+|++.+|
T Consensus       699 ~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~l  778 (793)
T PLN00181        699 TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTL  778 (793)
T ss_pred             cceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeE
Confidence            57788999999999999999999999999999999999765432211             13356679999999999999


Q ss_pred             EEeeCCCeEEEeec
Q psy226          392 VTGSVDKTVKVWEC  405 (406)
Q Consensus       392 ~sgs~Dg~v~iw~~  405 (406)
                      ++|+.||.|+||+.
T Consensus       779 va~~~dG~I~i~~~  792 (793)
T PLN00181        779 VAANSTGNIKILEM  792 (793)
T ss_pred             EEecCCCcEEEEec
Confidence            99999999999986

>KOG0291|consensus

Probab=100.00  E-value=8e-40  Score=303.11  Aligned_cols=295  Identities=23%  Similarity=0.432  Sum_probs=258.9

Q ss_pred             CCCCceEEeccCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcE
Q psy226           94 PRAPEKFALSGHRSPVIKVIFHPVFSLMASCSE-DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSL  172 (406)
Q Consensus        94 ~~~~~~~~l~~h~~~V~~v~~~p~~~~latgs~-dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i  172 (406)
                      |.....+.+.--..+|..++|+..|..||-|+. -|.+-||++.+..++...++|...+++++++|||.++++|+.||.|
T Consensus       295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV  374 (893)
T KOG0291|consen  295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV  374 (893)
T ss_pred             CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence            333344445555678999999999999998765 4899999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC-CccEEEEEECCCCCEEEEEe
Q psy226          173 KLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH-REWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       173 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~  251 (406)
                      +|||..++-|..++..|+..|+++.|+..++.+++.|.||+|+.||+....+.+++... +....+++.+|.|.++.+|+
T Consensus       375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~  454 (893)
T KOG0291|consen  375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA  454 (893)
T ss_pred             EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence            99999999999999999999999999999999999999999999999999999999765 34567899999999999999


Q ss_pred             CCC-eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy226          252 NDH-TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL  330 (406)
Q Consensus       252 ~d~-~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~  330 (406)
                      .|. .|.+|++.+++.+-.+.||++||.++.|+|.                  +..|++||.|++||+||+-.......-
T Consensus       455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~------------------~~~LaS~SWDkTVRiW~if~s~~~vEt  516 (893)
T KOG0291|consen  455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD------------------GSLLASGSWDKTVRIWDIFSSSGTVET  516 (893)
T ss_pred             cceEEEEEEEeecCeeeehhcCCCCcceeeEEccc------------------cCeEEeccccceEEEEEeeccCceeee
Confidence            886 4999999999999999999999999999984                  678999999999999998655333333


Q ss_pred             eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc--------------------ccceEEEEEEeCCCCE
Q psy226          331 IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA--------------------HSHFVTSLDFHRAHPY  390 (406)
Q Consensus       331 ~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~--------------------h~~~v~~l~~~~~~~~  390 (406)
                      ..+..-+.+++|+|+|+.|+++..||.|.+||...+..+.++.+                    .....+.+++++||.+
T Consensus       517 l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~  596 (893)
T KOG0291|consen  517 LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKC  596 (893)
T ss_pred             EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCE
Confidence            44666799999999999999999999999999876655543332                    2346899999999999


Q ss_pred             EEEeeCCCeEEEeecC
Q psy226          391 VVTGSVDKTVKVWECR  406 (406)
Q Consensus       391 l~sgs~Dg~v~iw~~~  406 (406)
                      +++||....|++|+++
T Consensus       597 IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  597 ILAGGESNSICIYDVP  612 (893)
T ss_pred             EEecCCcccEEEEECc
Confidence            9999999999999864

>KOG0319|consensus

Probab=100.00  E-value=6e-41  Score=310.08  Aligned_cols=284  Identities=30%  Similarity=0.506  Sum_probs=257.5

Q ss_pred             eccCCCCeEEEEE-cCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          102 LSGHRSPVIKVIF-HPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       102 l~~h~~~V~~v~~-~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      +.|.++.|..++| .|+.++||.++..+.+|+|+..+.... .+.||++.|.+++...+|.+|+|||.|.++++|.++++
T Consensus       319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~  397 (775)
T KOG0319|consen  319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN  397 (775)
T ss_pred             hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence            5688899999887 578899999999999999998887665 88999999999997778899999999999999987443


Q ss_pred             ----eEEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCe---------EEEEeecCCccEEEEEECCCCCE
Q psy226          181 ----QCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGY---------CVKTLTGHREWVRQIKVSPDGTL  246 (406)
Q Consensus       181 ----~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~~~~~~~  246 (406)
                          .++....+|+..|.+++++..+ .+++++|.|+++++|++...+         +..+...|...|++++++|+..+
T Consensus       398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL  477 (775)
T KOG0319|consen  398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL  477 (775)
T ss_pred             cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce
Confidence                3455667999999999997655 489999999999999997521         11233579999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE
Q psy226          247 LASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL  326 (406)
Q Consensus       247 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~  326 (406)
                      +|+||.|++.++|+++.......+.+|...|.++.|+|                  ....++++|.|++|+||.+.++.|
T Consensus       478 iAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~------------------~dq~laT~SgD~TvKIW~is~fSC  539 (775)
T KOG0319|consen  478 IATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK------------------NDQLLATCSGDKTVKIWSISTFSC  539 (775)
T ss_pred             EEecccccceeeecccCceEEEEeeCCccceEEEEecc------------------ccceeEeccCCceEEEEEecccee
Confidence            99999999999999998888999999999999999998                  356899999999999999999999


Q ss_pred             EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       327 ~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      +.+|.||...|..+.|-.+|+.|+|++.||-|++|+++++.|+.++.+|...|++++-+|....++||+.||.|.+|.
T Consensus       540 lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  540 LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999995

>KOG0319|consensus

Probab=100.00  E-value=1.2e-40  Score=308.06  Aligned_cols=306  Identities=31%  Similarity=0.507  Sum_probs=258.6

Q ss_pred             Eecc-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCC--EEEEEeCCCcEEEEeC
Q psy226          101 ALSG-HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK--LLVSCSADMSLKLWDM  177 (406)
Q Consensus       101 ~l~~-h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~--~l~sgs~d~~i~vwd~  177 (406)
                      .++. |.+||..++|+|.+.+|++|+.||.|+|||+..+.....++||.+.|.++.|+|+-.  .|++|..|+++++||+
T Consensus        99 swKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl  178 (775)
T KOG0319|consen   99 SWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNL  178 (775)
T ss_pred             hHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEc
Confidence            3455 999999999999999999999999999999999999999999999999999999764  5899999999999999


Q ss_pred             CCC-eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEE-------------------------------
Q psy226          178 STY-QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV-------------------------------  225 (406)
Q Consensus       178 ~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~-------------------------------  225 (406)
                      .+. .|+.++..|.+.|+++.|.+++..++++++|..+.+||+.+.++.                               
T Consensus       179 ~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~  258 (775)
T KOG0319|consen  179 NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGG  258 (775)
T ss_pred             ccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecC
Confidence            843 357888899999999999999999999999999999986321000                               


Q ss_pred             --------------------------------------------------------------------------------
Q psy226          226 --------------------------------------------------------------------------------  225 (406)
Q Consensus       226 --------------------------------------------------------------------------------  225 (406)
                                                                                                      
T Consensus       259 ~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~  338 (775)
T KOG0319|consen  259 SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH  338 (775)
T ss_pred             CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce
Confidence                                                                                            


Q ss_pred             --------------------EEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCc----cceeEEecCCceEEEEE
Q psy226          226 --------------------KTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK----ETKAELRGHDHTVECVA  281 (406)
Q Consensus       226 --------------------~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~  281 (406)
                                          +.+.||.+.|.++....+|-+|+||+.|+++++|.+...    .+.....+|++.|.+++
T Consensus       339 laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava  418 (775)
T KOG0319|consen  339 LAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA  418 (775)
T ss_pred             EEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee
Confidence                                112467777777876677889999999999999987433    23456678999999988


Q ss_pred             eCCCCCccccc----------ccc------------------------CCCCCCCCCCEEEEEeCCCcEEEEECCCCeEE
Q psy226          282 WAPGVASESIS----------EAA------------------------GRPPGQGGGPYLATGSRDKTIKLWDVGSGSLL  327 (406)
Q Consensus       282 ~~~~~~~~~~~----------~~~------------------------~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~  327 (406)
                      ++....+...+          ...                        ......++...+++||.|++.+||++......
T Consensus       419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~  498 (775)
T KOG0319|consen  419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL  498 (775)
T ss_pred             ecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE
Confidence            75443221110          000                        00012346789999999999999999999999


Q ss_pred             EEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          328 FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       328 ~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      .++.||...|.+|.|+|..+.++|+|.|++|+||.+.++.+++++.+|...|..+.|-.++..|+||+.||.+|+|+++
T Consensus       499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999985

>KOG0286|consensus

Probab=100.00  E-value=6.7e-40  Score=272.97  Aligned_cols=242  Identities=27%  Similarity=0.459  Sum_probs=223.7

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC------cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEE
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG------EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW  175 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~------~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vw  175 (406)
                      ++-...-|..++|+|.++++|+|+-|+...||++.+.      +..+.+.+|++.+.|+.|-+ ...|+|+|.|.++-+|
T Consensus        93 ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalW  171 (343)
T KOG0286|consen   93 IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALW  171 (343)
T ss_pred             EecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEE
Confidence            3344567999999999999999999999999999865      35667899999999999987 4678899999999999


Q ss_pred             eCCCCeEEEEEecCCcceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          176 DMSTYQCLKTMQGHDHNVTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       176 d~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      |+++++.+..+.||...|.++.++| +++.+++|+-|++.++||++.+.++++|.+|...|++++|.|+|.-|++|+.|+
T Consensus       172 Die~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~  251 (343)
T KOG0286|consen  172 DIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA  251 (343)
T ss_pred             EcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc
Confidence            9999999999999999999999999 899999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCccceeEEec--CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy226          255 TARVWSLATKETKAELRG--HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~  332 (406)
                      ++|+||++..+.+..+..  ...+|.+++|+.                  .|++|++|..|..+.+||.-.++.+-.+.|
T Consensus       252 tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~------------------SGRlLfagy~d~~c~vWDtlk~e~vg~L~G  313 (343)
T KOG0286|consen  252 TCRLYDLRADQELAVYSHDSIICGITSVAFSK------------------SGRLLFAGYDDFTCNVWDTLKGERVGVLAG  313 (343)
T ss_pred             eeEEEeecCCcEEeeeccCcccCCceeEEEcc------------------cccEEEeeecCCceeEeeccccceEEEeec
Confidence            999999999887776653  235788888876                  589999999999999999999999999999


Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy226          333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWD  362 (406)
Q Consensus       333 h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd  362 (406)
                      |++.|+++..+|||.-|++||.|.++|||.
T Consensus       314 HeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  314 HENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999999999999999999999994

>KOG0315|consensus

Probab=100.00  E-value=1.2e-39  Score=265.68  Aligned_cols=265  Identities=26%  Similarity=0.546  Sum_probs=235.3

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE--YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      +++-..+.|+.+.+.|++..||+|+. ..||+||++++.  .+.++.+|+..|+++.|..+|+.+++||.||++||||+.
T Consensus        35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR  113 (311)
T KOG0315|consen   35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR  113 (311)
T ss_pred             EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence            44444578999999999999999886 589999999875  578899999999999999999999999999999999999


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeec-CCccEEEEEECCCCCEEEEEeCCCeEE
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG-HREWVRQIKVSPDGTLLASCSNDHTAR  257 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~d~~v~  257 (406)
                      ...+.+.++ |..+|+++..+|+...|++|..+|.|++||+.+..+...+.. ...+|.++.+.|||.+++.+.+-|.++
T Consensus       114 ~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cy  192 (311)
T KOG0315|consen  114 SLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCY  192 (311)
T ss_pred             Ccccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence            877766554 779999999999999999999999999999998877665543 446799999999999999999999999


Q ss_pred             EEeCCCc------cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC-eEEEEE
Q psy226          258 VWSLATK------ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG-SLLFTL  330 (406)
Q Consensus       258 vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~-~~~~~~  330 (406)
                      +|++-+.      .++..++.|+.-+..+.++|                  ++++|++++.|.+++||+..+. +....+
T Consensus       193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP------------------d~k~lat~ssdktv~iwn~~~~~kle~~l  254 (311)
T KOG0315|consen  193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSP------------------DVKYLATCSSDKTVKIWNTDDFFKLELVL  254 (311)
T ss_pred             EEEccCCCccccceEhhheecccceEEEEEECC------------------CCcEEEeecCCceEEEEecCCceeeEEEe
Confidence            9998654      34556788999999999998                  4789999999999999999887 666788


Q ss_pred             eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEe
Q psy226          331 IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFH  385 (406)
Q Consensus       331 ~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~  385 (406)
                      .+|..|+..++||.+|+||++|+.|+.+++||+..++.++...+|.....|++.+
T Consensus       255 ~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  255 TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            9999999999999999999999999999999999999999999998887777764

>KOG0318|consensus

Probab=100.00  E-value=1.4e-38  Score=284.10  Aligned_cols=304  Identities=22%  Similarity=0.358  Sum_probs=248.6

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec---ccccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH---GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~---~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      ++..|..-|+|+.|+|||+.+||++.||+|.+||-.+|+.+..+.   +|.+.|.+|+|+||+..++|+|.|.++||||+
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV  264 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV  264 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence            456799999999999999999999999999999999999999988   89999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCc---ceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          178 STYQCLKTMQGHDH---NVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       178 ~~~~~~~~~~~h~~---~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      .+.++++++.....   .-.++.|.  ++.|++.|.+|+|.+++...+..++.+.||...|+++..+|++.+|++|+.||
T Consensus       265 s~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG  342 (603)
T KOG0318|consen  265 STNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG  342 (603)
T ss_pred             eccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence            99999888764332   33344554  67899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCccceeEE-ecCCceEEEEEeCCCC---------------------Ccc--------ccccccC--------
Q psy226          255 TARVWSLATKETKAEL-RGHDHTVECVAWAPGV---------------------ASE--------SISEAAG--------  296 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~---------------------~~~--------~~~~~~~--------  296 (406)
                      .|.-|+..++..-... .+|...|.+++.....                     ...        .......        
T Consensus       343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv  422 (603)
T KOG0318|consen  343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV  422 (603)
T ss_pred             eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence            9999998776433221 3455555444432200                     000        0000000        


Q ss_pred             -------------------------CCCCCCCCCEEEEEeCCCcEEEEECCCCeE--EEEEeCCCcCEEEEEEcCCCCEE
Q psy226          297 -------------------------RPPGQGGGPYLATGSRDKTIKLWDVGSGSL--LFTLIGHDNWVRGVTFHPGGKYL  349 (406)
Q Consensus       297 -------------------------~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~--~~~~~~h~~~v~~l~~s~~g~~l  349 (406)
                                               .....+.+.+++.|+.|+.|+||.+..+..  ......|...|++++||||+.||
T Consensus       423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl  502 (603)
T KOG0318|consen  423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL  502 (603)
T ss_pred             EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence                                     000134577899999999999999976553  33566799999999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCccc-eeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          350 VSCGDDKTLRVWDTANKRNM-KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       350 ~sgs~d~~i~vwd~~~~~~~-~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      |+|...+.+.+||..+.+.. ..+..|+..|.+|+|+|+...+||||.|-.|.||+++
T Consensus       503 a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  503 AAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             EEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            99999999999999887652 3345699999999999999999999999999999864

>KOG0291|consensus

Probab=100.00  E-value=7e-39  Score=296.89  Aligned_cols=286  Identities=25%  Similarity=0.471  Sum_probs=255.5

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC-CcEEEEeCCCC
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD-MSLKLWDMSTY  180 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d-~~i~vwd~~~~  180 (406)
                      +......|+|.+|||..++||+|-..|...+|++.+-.++..+.-...+|..++|+..|..|+.|+.. |.+-||++.+.
T Consensus       261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE  340 (893)
T KOG0291|consen  261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE  340 (893)
T ss_pred             ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence            34445789999999999999999999999999999999998888777899999999999999998765 89999999988


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEe
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS  260 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd  260 (406)
                      ..+-..++|...+.+++++|||+++++|+.||.|+|||...|.|..+|..|+..|+.+.|+..|+.+++.+.||+||.||
T Consensus       341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD  420 (893)
T KOG0291|consen  341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD  420 (893)
T ss_pred             ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence            88888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccceeEEecCCc-eEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC-cEEEEECCCCeEEEEEeCCCcCEE
Q psy226          261 LATKETKAELRGHDH-TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK-TIKLWDVGSGSLLFTLIGHDNWVR  338 (406)
Q Consensus       261 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~lwd~~~~~~~~~~~~h~~~v~  338 (406)
                      +...+.-.++..... ...|++-.|                  .|..+..|+.|. .|.+|++++|+++-.+.||+++|.
T Consensus       421 lkRYrNfRTft~P~p~QfscvavD~------------------sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs  482 (893)
T KOG0291|consen  421 LKRYRNFRTFTSPEPIQFSCVAVDP------------------SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVS  482 (893)
T ss_pred             ecccceeeeecCCCceeeeEEEEcC------------------CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcce
Confidence            988777666654432 334555555                  467788888776 599999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCC-ccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          339 GVTFHPGGKYLVSCGDDKTLRVWDTANK-RNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       339 ~l~~s~~g~~l~sgs~d~~i~vwd~~~~-~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +++|+|.|..|+|||.|++||+||+-.. ..+.++. +.+.+..++|+|+|.-||++..||.|.+||.+
T Consensus       483 ~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  483 GLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIK  550 (893)
T ss_pred             eeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence            9999999999999999999999998653 3455665 55679999999999999999999999999963

>KOG0316|consensus

Probab=100.00  E-value=1.1e-39  Score=263.77  Aligned_cols=282  Identities=23%  Similarity=0.382  Sum_probs=253.1

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      ..+.+|.++|.++.|+-+|++.+||+.|.+|++|+...|.+++++.+|...|.+++.+.|+..+++|+.|..|.+||+++
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC--CeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT--GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTAR  257 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~--~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~  257 (406)
                      ++..+.+.+|...|..++|+.+...+++||-|.++++||.++  .++++.+....+.|.++.++  +..+++|+.||++|
T Consensus        91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvR  168 (307)
T KOG0316|consen   91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVR  168 (307)
T ss_pred             CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEE
Confidence            999999999999999999999999999999999999999875  46788888888889888875  56799999999999


Q ss_pred             EEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcC-
Q psy226          258 VWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNW-  336 (406)
Q Consensus       258 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~-  336 (406)
                      .||++.++......  .++|.++.|++                  ++...+.++.|+++++.|-.+|+++...+||.+. 
T Consensus       169 tydiR~G~l~sDy~--g~pit~vs~s~------------------d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e  228 (307)
T KOG0316|consen  169 TYDIRKGTLSSDYF--GHPITSVSFSK------------------DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME  228 (307)
T ss_pred             EEEeecceeehhhc--CCcceeEEecC------------------CCCEEEEeeccceeeecccchhHHHHHhcccccce
Confidence            99999887655443  46799999998                  4677889999999999999999999999999764 


Q ss_pred             -EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccce-EEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          337 -VRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF-VTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       337 -v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~-v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                       -...+++.....+++||+||.|++||+.....+..+..+... |.++++||...-++++. ++.+..|.
T Consensus       229 ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~  297 (307)
T KOG0316|consen  229 YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY  297 (307)
T ss_pred             eeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence             445678888899999999999999999999999999888887 89999999988777765 34455553

>KOG0273|consensus

Probab=100.00  E-value=8.6e-40  Score=288.23  Aligned_cols=288  Identities=25%  Similarity=0.452  Sum_probs=257.8

Q ss_pred             eEEeccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCC--CcEE--EEec------c----cccCeeeEEECCCCCEE
Q psy226           99 KFALSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYET--GEYE--RALH------G----HLDSVQDIAFDQSGKLL  163 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~-~latgs~dg~v~vwd~~~--~~~~--~~~~------~----h~~~V~~l~~~~~g~~l  163 (406)
                      ++....|..+|++.+|+|... ++++|+.|-+.++|++..  ....  ..++      +    -+..|++|+|+.+|..|
T Consensus       171 ~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L  250 (524)
T KOG0273|consen  171 KAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL  250 (524)
T ss_pred             ceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence            334455999999999999877 999999999999999864  1111  1111      1    13569999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCC
Q psy226          164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD  243 (406)
Q Consensus       164 ~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  243 (406)
                      |+|+.||.+++|+.. +..+.++..|.++|.++.|+..|+||++++.|+++.+||..+|...+.+.-|..+-..+.|-.+
T Consensus       251 atG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~  329 (524)
T KOG0273|consen  251 ATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN  329 (524)
T ss_pred             EEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC
Confidence            999999999999975 5667888899999999999999999999999999999999999999999999888667777543


Q ss_pred             CCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q psy226          244 GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS  323 (406)
Q Consensus       244 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~  323 (406)
                       ..|++++.|+.|+|+.+....++.++.+|..+|.++.|.|                  .|.+|++++.|++++||....
T Consensus       330 -~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~------------------tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  330 -DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP------------------TGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             -ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC------------------CCceEEEecCCCeeEeeecCC
Confidence             4699999999999999999999999999999999999998                  578999999999999999999


Q ss_pred             CeEEEEEeCCCcCEEEEEEcCCC---------CEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEe
Q psy226          324 GSLLFTLIGHDNWVRGVTFHPGG---------KYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG  394 (406)
Q Consensus       324 ~~~~~~~~~h~~~v~~l~~s~~g---------~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sg  394 (406)
                      ..+...+.+|...|..+.|+|.|         ..+++++.|++|++||+..+.++.+|..|..+|.+|+|+|+++|||+|
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsG  470 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASG  470 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEec
Confidence            99999999999999999999964         578999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEeecC
Q psy226          395 SVDKTVKVWECR  406 (406)
Q Consensus       395 s~Dg~v~iw~~~  406 (406)
                      +.||.|.+|+++
T Consensus       471 s~dg~V~iws~~  482 (524)
T KOG0273|consen  471 SLDGCVHIWSTK  482 (524)
T ss_pred             CCCCeeEecccc
Confidence            999999999975

>KOG0285|consensus

Probab=100.00  E-value=4.7e-40  Score=280.71  Aligned_cols=246  Identities=29%  Similarity=0.559  Sum_probs=233.0

Q ss_pred             EEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q psy226          141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA  220 (406)
Q Consensus       141 ~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~  220 (406)
                      -+.+.+|.+.|.|+++.|.+..|++|+.|++|+|||+.+++...++.||-..|..+++++-..|+++++.|+.|+.||+.
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe  223 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE  223 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence            35578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCC
Q psy226          221 TGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPG  300 (406)
Q Consensus       221 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  300 (406)
                      ..+.++.+.||-..|.+++..|.-..|++|+.|.++||||+++...+..+.+|..+|.++.+.|                
T Consensus       224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~----------------  287 (460)
T KOG0285|consen  224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP----------------  287 (460)
T ss_pred             hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec----------------
Confidence            9999999999999999999999999999999999999999999999999999999999999876                


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEE
Q psy226          301 QGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVT  380 (406)
Q Consensus       301 ~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~  380 (406)
                        ..+.+++|+.|++|++||++.|+...++..|...|++++.+|....++|+|.| .|+-|++..+..++.+.+|...|+
T Consensus       288 --~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iin  364 (460)
T KOG0285|consen  288 --TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIIN  364 (460)
T ss_pred             --CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceee
Confidence              34569999999999999999999999999999999999999999999999988 489999999999999999999999


Q ss_pred             EEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          381 SLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       381 ~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +|+.+.|+ ++++|+..|.+.+||-+
T Consensus       365 tl~~nsD~-v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  365 TLSVNSDG-VLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             eeeeccCc-eEEEcCCceEEEEEecC
Confidence            99999886 78889999999999954

>KOG0263|consensus

Probab=100.00  E-value=5.6e-40  Score=306.53  Aligned_cols=258  Identities=30%  Similarity=0.568  Sum_probs=234.9

Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEe
Q psy226          120 LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFL  199 (406)
Q Consensus       120 ~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  199 (406)
                      .+=+++.|-.+.+-|-..+...+++.||.++|..+.|+|+.++|+++|.|++||+|.+.+..++-..+||..+|+.+.|+
T Consensus       423 ~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~  502 (707)
T KOG0263|consen  423 NIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA  502 (707)
T ss_pred             cccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec
Confidence            34456666667888877777778899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEE
Q psy226          200 PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVEC  279 (406)
Q Consensus       200 p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~  279 (406)
                      |.|-+++|||.|++-++|........+.+.+|...|.|+.|+|+..++++||.|.+||+||+.++..+..+.||..+|.+
T Consensus       503 P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~a  582 (707)
T KOG0263|consen  503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTA  582 (707)
T ss_pred             CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEE
Q psy226          280 VAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR  359 (406)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~  359 (406)
                      ++|+|                  .|.+|++|+.|+.|++||+.+++++..+.+|.+.|.++.|+.+|..||+||.|++|+
T Consensus       583 l~~Sp------------------~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~  644 (707)
T KOG0263|consen  583 LAFSP------------------CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVR  644 (707)
T ss_pred             EEEcC------------------CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEE
Confidence            99999                  589999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCc------------------------cceeeccccceEEEEEEeCCCCEEEEee
Q psy226          360 VWDTANKR------------------------NMKTLEAHSHFVTSLDFHRAHPYVVTGS  395 (406)
Q Consensus       360 vwd~~~~~------------------------~~~~l~~h~~~v~~l~~~~~~~~l~sgs  395 (406)
                      +||+....                        .+.++.....+|..|.|...+..|+.|.
T Consensus       645 lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g~  704 (707)
T KOG0263|consen  645 LWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVGP  704 (707)
T ss_pred             EEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEecc
Confidence            99975321                        2334444556788999988776666553

>KOG0292|consensus

Probab=100.00  E-value=1.5e-39  Score=305.73  Aligned_cols=282  Identities=31%  Similarity=0.549  Sum_probs=253.6

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEE
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCL  183 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~  183 (406)
                      ..+..|-.++|||..+.+.++--.|.|.+||++-+.++..+..|.++|+.++|+|++.++++|+.|..|+||+..+.+|+
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl   86 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL   86 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy226          184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT  263 (406)
Q Consensus       184 ~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~  263 (406)
                      .++.||-+.|..+.|++.-..++++|+|.||+||+-.++.|+..+.||..+|+|..|+|...+++|+|-|.+|||||+..
T Consensus        87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen   87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999753


Q ss_pred             ccc-----------------------------eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC
Q psy226          264 KET-----------------------------KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK  314 (406)
Q Consensus       264 ~~~-----------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  314 (406)
                      -+.                             ...+.||+..|.-++|.|                  .-+.+++|++|+
T Consensus       167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp------------------TlpliVSG~DDR  228 (1202)
T KOG0292|consen  167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP------------------TLPLIVSGADDR  228 (1202)
T ss_pred             hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC------------------CcceEEecCCcc
Confidence            110                             134567888888888887                  356899999999


Q ss_pred             cEEEEECCCCe--EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEE
Q psy226          315 TIKLWDVGSGS--LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVV  392 (406)
Q Consensus       315 ~i~lwd~~~~~--~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~  392 (406)
                      .|++|.+...+  .+-+..||.+.|+++-|+|....++|.|+|++|+|||+.....++++.-..+..+.++-||..+++|
T Consensus       229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA  308 (1202)
T KOG0292|consen  229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA  308 (1202)
T ss_pred             eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee
Confidence            99999986544  3456789999999999999999999999999999999999999999976677889999999999888


Q ss_pred             EeeCCCeEEEee
Q psy226          393 TGSVDKTVKVWE  404 (406)
Q Consensus       393 sgs~Dg~v~iw~  404 (406)
                      .| .|+-+.+|.
T Consensus       309 Ag-HDsGm~VFk  319 (1202)
T KOG0292|consen  309 AG-HDSGMIVFK  319 (1202)
T ss_pred             ee-cCCceEEEE
Confidence            66 455565654

>KOG0293|consensus

Probab=100.00  E-value=2.7e-39  Score=280.73  Aligned_cols=286  Identities=23%  Similarity=0.427  Sum_probs=243.2

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG---EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      ..+..|.+.|.-+.|+++|++|||++.|.+..+|++...   ++.+++.+|..+|.-+.|+||.++|++|+.|..+++||
T Consensus       218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD  297 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence            457789999999999999999999999999999986543   35778899999999999999999999999999999999


Q ss_pred             CCCCeEEEEEe-cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCC-ccEEEEEECCCCCEEEEEeCCC
Q psy226          177 MSTYQCLKTMQ-GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR-EWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       177 ~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      +.++.+...+. +|...+.+++|.|||..+++|+.|++|..||+.. .......+-+ ..|.++++++||+++++.+.|.
T Consensus       298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~  376 (519)
T KOG0293|consen  298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDK  376 (519)
T ss_pred             CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEeccc
Confidence            99998776553 3457899999999999999999999999999854 3333333332 4588999999999999999999


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD  334 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~  334 (406)
                      .+++++..+...+. +.....+|.+...+.                  +++++++.-.+..+++||+...+.+..+.||.
T Consensus       377 ~i~l~~~e~~~dr~-lise~~~its~~iS~------------------d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghk  437 (519)
T KOG0293|consen  377 KIRLYNREARVDRG-LISEEQPITSFSISK------------------DGKLALVNLQDQEIHLWDLEENKLVRKYFGHK  437 (519)
T ss_pred             ceeeechhhhhhhc-cccccCceeEEEEcC------------------CCcEEEEEcccCeeEEeecchhhHHHHhhccc
Confidence            99999987655443 233456777777665                  57889999999999999999888888888886


Q ss_pred             c--CEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCC-EEEEeeCCCeEEEeec
Q psy226          335 N--WVRGVTFHP-GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP-YVVTGSVDKTVKVWEC  405 (406)
Q Consensus       335 ~--~v~~l~~s~-~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~-~l~sgs~Dg~v~iw~~  405 (406)
                      .  .+-.-+|-- +..+++|||+|+.|+||+..+++.+.++.+|...|+||+|+|..+ .+||||.||+|+||..
T Consensus       438 q~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  438 QGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             ccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            4  344445543 458999999999999999999999999999999999999999886 5799999999999964

>KOG0295|consensus

Probab=100.00  E-value=4e-39  Score=275.69  Aligned_cols=245  Identities=34%  Similarity=0.624  Sum_probs=233.5

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYET-GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      .|.||.+.|..|+|+..|.++|++|.|-.+++||..+ -+..+.+.+|...|.++.|-|.|.++++++.|.+|+.|++.+
T Consensus       145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t  224 (406)
T KOG0295|consen  145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT  224 (406)
T ss_pred             hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc
Confidence            4789999999999999999999999999999999887 456677889999999999999999999999999999999999


Q ss_pred             CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCC---------------C
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD---------------G  244 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---------------~  244 (406)
                      +-|++++.+|...|..++.+.||.++++|+.|.++++|-+.++.|...+..|.-+|.+++|.|.               +
T Consensus       225 g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~  304 (406)
T KOG0295|consen  225 GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGG  304 (406)
T ss_pred             ceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999774               2


Q ss_pred             CEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q psy226          245 TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG  324 (406)
Q Consensus       245 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~  324 (406)
                      .++.+++.|++|++||+.++..+.++.+|...|..++|+|                  +|+||+++.+|+++++||++++
T Consensus       305 ~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p------------------~Gkyi~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP------------------GGKYILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC------------------CCeEEEEEecCCcEEEEEeccc
Confidence            5899999999999999999999999999999999999998                  5899999999999999999999


Q ss_pred             eEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy226          325 SLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       325 ~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~  363 (406)
                      ++..++..|+..|++++|+.+..+++||+-|.++++|..
T Consensus       367 ~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  367 QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999999999999999999999999999964

>KOG0313|consensus

Probab=100.00  E-value=4.3e-38  Score=270.72  Aligned_cols=277  Identities=32%  Similarity=0.548  Sum_probs=236.7

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCC---CCEEEEEeCCCcEEEEeCCCC
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQS---GKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~---g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      -|.+-|.+|...  +..++||++||++++||.. |+....+.||+++|.+++|--.   ...|+++|.|.++++|-++.+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            488888888877  6899999999999999965 6678889999999998887433   346999999999999988755


Q ss_pred             eE----EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC-------------------------CeEEEEeecC
Q psy226          181 QC----LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT-------------------------GYCVKTLTGH  231 (406)
Q Consensus       181 ~~----~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~-------------------------~~~~~~~~~~  231 (406)
                      ..    ++.-+||...|-+++..++|..+++||.|.+|++|+..+                         +.++.++.||
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            32    333459999999999999999999999999999999321                         2245678899


Q ss_pred             CccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe
Q psy226          232 REWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS  311 (406)
Q Consensus       232 ~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  311 (406)
                      +++|.++.|++ ...+.+++.|.+|+.||+.++..+..+.+ ..+..++.+.|.                  ...|++|+
T Consensus       260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~------------------~~Ll~~gs  319 (423)
T KOG0313|consen  260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPL------------------SKLLASGS  319 (423)
T ss_pred             ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccc------------------cceeeecC
Confidence            99999999998 67899999999999999999888776654 446778888773                  56899999


Q ss_pred             CCCcEEEEECCCCe---EEEEEeCCCcCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc-cceeeccccceEEEEEEeC
Q psy226          312 RDKTIKLWDVGSGS---LLFTLIGHDNWVRGVTFHPGGK-YLVSCGDDKTLRVWDTANKR-NMKTLEAHSHFVTSLDFHR  386 (406)
Q Consensus       312 ~d~~i~lwd~~~~~---~~~~~~~h~~~v~~l~~s~~g~-~l~sgs~d~~i~vwd~~~~~-~~~~l~~h~~~v~~l~~~~  386 (406)
                      .|..||+||.+++.   ...+|.+|.++|.++.|+|... .|++|+.|+++++||+++.+ .+..+.+|...|.++.|+.
T Consensus       320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~  399 (423)
T KOG0313|consen  320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE  399 (423)
T ss_pred             CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC
Confidence            99999999998753   4568999999999999999765 57899999999999999877 8999999999999999975


Q ss_pred             CCCEEEEeeCCCeEEEee
Q psy226          387 AHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       387 ~~~~l~sgs~Dg~v~iw~  404 (406)
                       +.+++|||.|.+++++.
T Consensus       400 -~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  400 -GGLIVSGGADNKLRIFK  416 (423)
T ss_pred             -CceEEeccCcceEEEec
Confidence             45899999999999985

>KOG0276|consensus

Probab=100.00  E-value=1.5e-38  Score=289.05  Aligned_cols=248  Identities=30%  Similarity=0.578  Sum_probs=234.5

Q ss_pred             EEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q psy226          141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA  220 (406)
Q Consensus       141 ~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~  220 (406)
                      .+++..|.+.|.++.|+|....++++-..|.|.|||.++...++.+.-.+-+|.+..|.+..+.+++|++|..|++|+..
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence            34556689999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             CCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCC
Q psy226          221 TGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPP  299 (406)
Q Consensus       221 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  299 (406)
                      ++..++.|..|++.|++++.+|...+++++|.|-+|++||.... .+.+.+.+|++-|.+++|.|.              
T Consensus        86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk--------------  151 (794)
T KOG0276|consen   86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK--------------  151 (794)
T ss_pred             cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC--------------
Confidence            99999999999999999999999999999999999999999764 567889999999999999995              


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCccceeeccccc
Q psy226          300 GQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGG--KYLVSCGDDKTLRVWDTANKRNMKTLEAHSH  377 (406)
Q Consensus       300 ~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g--~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~  377 (406)
                         +...++++|-|++|++|.+.+..+.+++.+|...|+++.|-+.|  .||+||++|.+|+|||..+..|+++|++|.+
T Consensus       152 ---D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~  228 (794)
T KOG0276|consen  152 ---DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN  228 (794)
T ss_pred             ---CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc
Confidence               45579999999999999999999999999999999999998865  5999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          378 FVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       378 ~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .|..+.|||.-++++|||.||+|+||+-
T Consensus       229 Nvs~v~fhp~lpiiisgsEDGTvriWhs  256 (794)
T KOG0276|consen  229 NVSFVFFHPELPIIISGSEDGTVRIWNS  256 (794)
T ss_pred             cceEEEecCCCcEEEEecCCccEEEecC
Confidence            9999999999999999999999999974

>KOG0284|consensus

Probab=100.00  E-value=1.4e-39  Score=282.14  Aligned_cols=245  Identities=27%  Similarity=0.575  Sum_probs=223.4

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEeccc-ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGH-LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h-~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      ++.|.++|.++.|++++.+++||+.+|.|++|+.+-.. ++.+.+| ...|++++|+|+...+++||.||+|+|||....
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~  212 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP  212 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence            56799999999999999999999999999999866443 4445554 489999999999999999999999999999988


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEe
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS  260 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd  260 (406)
                      +....+.||.-.|.++.|+|...++++||.|..|++||.++|.|+.++.+|+..|..+.|+|++++|+++|.|..++++|
T Consensus       213 kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~D  292 (464)
T KOG0284|consen  213 KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFD  292 (464)
T ss_pred             chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEe
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE-eCCCcCEEE
Q psy226          261 LATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL-IGHDNWVRG  339 (406)
Q Consensus       261 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~-~~h~~~v~~  339 (406)
                      +++.+.+..+++|...+.++.|+|-                 ...+|.+|+.||.|..|.+....++..+ .+|...|.+
T Consensus       293 iR~mkEl~~~r~Hkkdv~~~~WhP~-----------------~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iws  355 (464)
T KOG0284|consen  293 IRTMKELFTYRGHKKDVTSLTWHPL-----------------NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWS  355 (464)
T ss_pred             hhHhHHHHHhhcchhhheeeccccc-----------------cccceeeccCCCceEEEeccccccccCCCcccccceee
Confidence            9988889999999999999999995                 3457999999999999999754444433 469999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          340 VTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       340 l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      ++|+|-|..|++|+.|.++++|...
T Consensus       356 l~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  356 LAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eeccccceeEeecCCCcceeeeccC
Confidence            9999999999999999999999753

>KOG0281|consensus

Probab=100.00  E-value=1.4e-39  Score=276.95  Aligned_cols=228  Identities=30%  Similarity=0.607  Sum_probs=209.5

Q ss_pred             ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEE
Q psy226          148 LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKT  227 (406)
Q Consensus       148 ~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~  227 (406)
                      .+.|.|+.+.  ...+++|..|++|+|||..+..+++.+.||++.|.|+.|  +.+.+++||.|.+|++||..+|+++.+
T Consensus       197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~t  272 (499)
T KOG0281|consen  197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNT  272 (499)
T ss_pred             CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhH
Confidence            4579999884  568999999999999999999999999999999999999  456999999999999999999999999


Q ss_pred             eecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc---eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCC
Q psy226          228 LTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET---KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGG  304 (406)
Q Consensus       228 ~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (406)
                      +-+|.+.|..+.|+  ..++++|+.|.++.+||+.+...   ...+.+|...|..+.|.                    .
T Consensus       273 lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--------------------~  330 (499)
T KOG0281|consen  273 LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--------------------D  330 (499)
T ss_pred             HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--------------------c
Confidence            99999999999997  45899999999999999987653   34678999999999885                    4


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEE
Q psy226          305 PYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF  384 (406)
Q Consensus       305 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~  384 (406)
                      +|+++++.|.+|++|++.++..++++.+|...|-|+.+  .|+++++||+|.+|++||+..|.+++.+++|..-|.|+.|
T Consensus       331 kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF  408 (499)
T KOG0281|consen  331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF  408 (499)
T ss_pred             ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee
Confidence            59999999999999999999999999999999998886  5899999999999999999999999999999999999999


Q ss_pred             eCCCCEEEEeeCCCeEEEeec
Q psy226          385 HRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       385 ~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +  .+.++||+.||+|++||+
T Consensus       409 d--~krIVSGaYDGkikvWdl  427 (499)
T KOG0281|consen  409 D--NKRIVSGAYDGKIKVWDL  427 (499)
T ss_pred             c--CceeeeccccceEEEEec
Confidence            4  568999999999999996

>KOG0306|consensus

Probab=100.00  E-value=3.4e-37  Score=285.60  Aligned_cols=285  Identities=27%  Similarity=0.477  Sum_probs=260.7

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ...+.||...|.+++++.+...++||+ .+.+++|+..+.+..+++...  .+.+..|-|.++++++|...|.+.+||+.
T Consensus       366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla  442 (888)
T KOG0306|consen  366 NIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLA  442 (888)
T ss_pred             eeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEee
Confidence            456789999999999999988888886 478999999999999988753  88899999999999999999999999999


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC-----CeEEEEee-------cCCccEEEEEECCCCCE
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT-----GYCVKTLT-------GHREWVRQIKVSPDGTL  246 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~-----~~~~~~~~-------~~~~~v~~l~~~~~~~~  246 (406)
                      +...+.+.+.|++.|++++.+|++..+++||.|.+|++||..-     |...+.+.       .-.+.|.|+++||||++
T Consensus       443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence            9888888899999999999999999999999999999999742     21111111       12467899999999999


Q ss_pred             EEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE
Q psy226          247 LASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL  326 (406)
Q Consensus       247 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~  326 (406)
                      ++.+--|.+|+||-+.+.+-...+.||.-||.|+..+|                  ++..+++||.|+.|++|-+.-|.|
T Consensus       523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~------------------DSklivTgSADKnVKiWGLdFGDC  584 (888)
T KOG0306|consen  523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP------------------DSKLIVTGSADKNVKIWGLDFGDC  584 (888)
T ss_pred             EEEEeccCeEEEEEecceeeeeeecccccceeEEeccC------------------CcCeEEeccCCCceEEeccccchh
Confidence            99999999999999999888889999999999999998                  467899999999999999999999


Q ss_pred             EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       327 ~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      .+.+.+|++.|.++.|-|...+++++|.|+.|+-||-.....++++.+|...|+|++..|+|.+++|+|.|..|++|.
T Consensus       585 HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  585 HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999996

>KOG0274|consensus

Probab=100.00  E-value=3.9e-37  Score=292.98  Aligned_cols=273  Identities=33%  Similarity=0.560  Sum_probs=251.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE-ecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEE
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERA-LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCL  183 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~-~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~  183 (406)
                      |...+++..|+  ...+++++.|++|++||..++..... +.||.+.|.++++...+.+|++|+.|.++++||..+++|.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            56778888898  67899999999999999999998887 9999999999999887899999999999999999999999


Q ss_pred             EEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy226          184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT  263 (406)
Q Consensus       184 ~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~  263 (406)
                      ..+.+|...|.++...  +..+++||.|.+|++|++.++.++.++.+|..+|+++.++  +.++++|+.|++|++||..+
T Consensus       285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~  360 (537)
T KOG0274|consen  285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT  360 (537)
T ss_pred             EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence            9999999999998874  4578889999999999999999999999999999999997  88999999999999999999


Q ss_pred             ccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC-eEEEEEeCCCcCEEEEEE
Q psy226          264 KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG-SLLFTLIGHDNWVRGVTF  342 (406)
Q Consensus       264 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~-~~~~~~~~h~~~v~~l~~  342 (406)
                      .+.+..+.+|...|.++.+.+                   ..++++|+.|++|++||++++ +++.++.+|...|..+.+
T Consensus       361 ~~cl~sl~gH~~~V~sl~~~~-------------------~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~  421 (537)
T KOG0274|consen  361 GKCLKSLSGHTGRVYSLIVDS-------------------ENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL  421 (537)
T ss_pred             ceeeeeecCCcceEEEEEecC-------------------cceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc
Confidence            999999999999999997754                   157999999999999999999 999999999998876664


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCccceeecc-ccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          343 HPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA-HSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       343 s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~-h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                        .+++|++++.|++|++||..++++++++.+ |...|..+++.  ...+++++.||++++||++
T Consensus       422 --~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  422 --RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             --ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence              578999999999999999999999999998 67889988886  5678899999999999975

>KOG0316|consensus

Probab=100.00  E-value=3.1e-37  Score=249.72  Aligned_cols=243  Identities=24%  Similarity=0.437  Sum_probs=221.9

Q ss_pred             EEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q psy226          141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA  220 (406)
Q Consensus       141 ~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~  220 (406)
                      ...+.+|.++|..+.|+-+|++.++++.|.+|++|+...+.++++..+|...|..++.+.|+..+++|+.|+.|.+||+.
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC--ccceeEEecCCceEEEEEeCCCCCccccccccCCC
Q psy226          221 TGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT--KETKAELRGHDHTVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       221 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                      +|+.++.+.+|...|+.+.|+.+...+++|+.|.++++||-++  .++++.+......|.++...               
T Consensus        90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---------------  154 (307)
T KOG0316|consen   90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---------------  154 (307)
T ss_pred             cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---------------
Confidence            9999999999999999999999999999999999999999875  46677777777778877764               


Q ss_pred             CCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccce
Q psy226          299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF  378 (406)
Q Consensus       299 ~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~  378 (406)
                           +..+++|+.||++|.||++.|+...-..+|  +|++++|+++|++++.++-|+++++.|-.+++.++.+++|.+.
T Consensus       155 -----~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~  227 (307)
T KOG0316|consen  155 -----EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM  227 (307)
T ss_pred             -----ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc
Confidence                 346999999999999999999887666555  6999999999999999999999999999999999999999764


Q ss_pred             --EEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          379 --VTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       379 --v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                        -...+++.....+++||.||.|.+||+
T Consensus       228 eykldc~l~qsdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  228 EYKLDCCLNQSDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             eeeeeeeecccceeEEeccCCceEEEEEe
Confidence              345567888889999999999999996

>KOG0266|consensus

Probab=100.00  E-value=1e-36  Score=290.77  Aligned_cols=246  Identities=36%  Similarity=0.688  Sum_probs=226.0

Q ss_pred             Eecc-cccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEc
Q psy226          143 ALHG-HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ--CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEV  219 (406)
Q Consensus       143 ~~~~-h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~  219 (406)
                      .+.+ |...|.++.|+++|+.|++++.|+.+++|+..+.+  ..+.+.+|...|.+++|+|++.++++++.|++|++||+
T Consensus       153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence            3434 47889999999999999999999999999997777  77778899999999999999999999999999999999


Q ss_pred             -CCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCC
Q psy226          220 -ATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       220 -~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                       ..+.+++++.+|..+|++++|+|+|+++++|+.|++|++||+++++....+.+|...|.+++|.+              
T Consensus       233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~--------------  298 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP--------------  298 (456)
T ss_pred             cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC--------------
Confidence             56689999999999999999999999999999999999999999999999999999999999988              


Q ss_pred             CCCCCCCEEEEEeCCCcEEEEECCCCe--EEEEEeCCCcC--EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc
Q psy226          299 PGQGGGPYLATGSRDKTIKLWDVGSGS--LLFTLIGHDNW--VRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA  374 (406)
Q Consensus       299 ~~~~~~~~l~s~~~d~~i~lwd~~~~~--~~~~~~~h~~~--v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~  374 (406)
                          ++.+|++++.|+.|++||+.++.  ++..+.++...  ++.+.|+|++.++++++.|+.+++||+..+..+..+.+
T Consensus       299 ----d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~  374 (456)
T KOG0266|consen  299 ----DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG  374 (456)
T ss_pred             ----CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence                47889999999999999999999  67888887665  99999999999999999999999999999999999988


Q ss_pred             ccce---EEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          375 HSHF---VTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       375 h~~~---v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      |...   +.+...++.+.++++|+.|+.|++|++.
T Consensus       375 ~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  375 HSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             cCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence            8774   4455668899999999999999999963

>KOG0288|consensus

Probab=100.00  E-value=1.2e-37  Score=270.65  Aligned_cols=284  Identities=25%  Similarity=0.431  Sum_probs=249.4

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE--YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      .+.+..|.+.|..+.|-+....|++|+.|..|++|+...++  ...++.|..++|+++.|.+++.++++++.|+.+++|+
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN  247 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence            34577899999999999999999999999999999988776  6677888899999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeE
Q psy226          177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTA  256 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v  256 (406)
                      +...+...++.||.+.|+++.|......+++|+.|.+|++||+....|.+++..- ..+..|+.+  +..+++|..|++|
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~--~~~~~SgH~Dkkv  324 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS--ISDVISGHFDKKV  324 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc-ccccceEec--ceeeeecccccce
Confidence            9999999999999999999999887767999999999999999999998876432 345556655  5678999999999


Q ss_pred             EEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC---
Q psy226          257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH---  333 (406)
Q Consensus       257 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h---  333 (406)
                      |+||.++.........+. .|.++..++                  ++..+.+++.|.++.+.|+++......+...   
T Consensus       325 RfwD~Rs~~~~~sv~~gg-~vtSl~ls~------------------~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k  385 (459)
T KOG0288|consen  325 RFWDIRSADKTRSVPLGG-RVTSLDLSM------------------DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK  385 (459)
T ss_pred             EEEeccCCceeeEeecCc-ceeeEeecc------------------CCeEEeeecCCCceeeeecccccEEEEeeccccc
Confidence            999999988888877766 788888776                  4677889999999999999998877666532   


Q ss_pred             -CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccc--eEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          334 -DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSH--FVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       334 -~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                       ..-.+.+.|||++.|+++||.||.|+||++.++++.+.+.....  .|++++|+|.|.+|++++.++.+.+|.
T Consensus       386 ~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  386 CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence             22378899999999999999999999999999999888864333  599999999999999999999999994

>KOG0643|consensus

Probab=100.00  E-value=3.9e-36  Score=247.56  Aligned_cols=285  Identities=21%  Similarity=0.315  Sum_probs=247.0

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      ..++||..|++-|.++.+|.+|++|+.|.++.||-..+|+.+.++.||++.|.|++.+.+.++|++|+.|.++++||+++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEecCCcceEEEEEecCCCEEEEEeC-----CCcEEEEEcC-------CCeEEEEeecCCccEEEEEECCCCCEE
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASR-----DKTIKMWEVA-------TGYCVKTLTGHREWVRQIKVSPDGTLL  247 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----d~~i~iwd~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~l  247 (406)
                      |+++..++ ...+|..+.|+++|++++.+..     .+.|.++|++       ...+...+..+...++.+-|.|-++.|
T Consensus        84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            99998887 4568999999999998877654     3679999997       344567777788899999999999999


Q ss_pred             EEEeCCCeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE
Q psy226          248 ASCSNDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL  326 (406)
Q Consensus       248 ~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~  326 (406)
                      ++|..||.|..||.+++ +.+.....|...|..+.++|+                  ..+++++|.|.+-++||..+-.+
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d------------------~T~FiT~s~Dttakl~D~~tl~v  224 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD------------------RTYFITGSKDTTAKLVDVRTLEV  224 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCC------------------cceEEecccCccceeeeccceee
Confidence            99999999999999986 445566789999999999884                  67899999999999999999999


Q ss_pred             EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEE--------------EeCCCCccceeeccccceEEEEEEeCCCCEEE
Q psy226          327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRV--------------WDTANKRNMKTLEAHSHFVTSLDFHRAHPYVV  392 (406)
Q Consensus       327 ~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~v--------------wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~  392 (406)
                      ++++. ...+|++.+++|--.+++.|+.....-|              |++-..+.+..+++|-++|++|+|||+|+..+
T Consensus       225 ~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYs  303 (327)
T KOG0643|consen  225 LKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYS  303 (327)
T ss_pred             EEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccc
Confidence            88886 4567999999998888877764322222              22222344566789999999999999999999


Q ss_pred             EeeCCCeEEEee
Q psy226          393 TGSVDKTVKVWE  404 (406)
Q Consensus       393 sgs~Dg~v~iw~  404 (406)
                      ||+.||.|++..
T Consensus       304 SGGEDG~VR~h~  315 (327)
T KOG0643|consen  304 SGGEDGYVRLHH  315 (327)
T ss_pred             cCCCCceEEEEE
Confidence            999999999854

>KOG0278|consensus

Probab=100.00  E-value=6.2e-38  Score=255.85  Aligned_cols=284  Identities=24%  Similarity=0.419  Sum_probs=252.1

Q ss_pred             EEeccCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226          100 FALSGHRSPVIKVIFHP---VFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p---~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      .+..||+.||..++|+|   +|-+|++++.||.--+-+-++|..+.++.||.+.|.+..++.+..+-++++.|-+.++||
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            35789999999999986   677999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe-EEEEeecCCccEEEEEECCCCCEEEEEeCCCe
Q psy226          177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY-CVKTLTGHREWVRQIKVSPDGTLLASCSNDHT  255 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~  255 (406)
                      .-++..+..+. |.+-|.+++|+.|.++|++|+.+..+|++|++... ....+.+|+..|+.+.|....+.|++...|++
T Consensus        88 a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t  166 (334)
T KOG0278|consen   88 AVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT  166 (334)
T ss_pred             hhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence            99998888775 89999999999999999999999999999997653 45678899999999999999999999999999


Q ss_pred             EEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc
Q psy226          256 ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN  335 (406)
Q Consensus       256 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~  335 (406)
                      ||+||.+++..++.+.. ..+|.++..++                  +|.++ +-...+.|++||..+..+++.+.- ..
T Consensus       167 VRLWD~rTgt~v~sL~~-~s~VtSlEvs~------------------dG~il-Tia~gssV~Fwdaksf~~lKs~k~-P~  225 (334)
T KOG0278|consen  167 VRLWDHRTGTEVQSLEF-NSPVTSLEVSQ------------------DGRIL-TIAYGSSVKFWDAKSFGLLKSYKM-PC  225 (334)
T ss_pred             eEEEEeccCcEEEEEec-CCCCcceeecc------------------CCCEE-EEecCceeEEeccccccceeeccC-cc
Confidence            99999999988877653 45566666665                  35555 445667899999999888877654 33


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee-ccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL-EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l-~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .|.+-+++|+-.++++|+.|..++.||..++..+..+ ++|-++|.||.|+|+|...|+||.||+|+||..
T Consensus       226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence            4888999999999999999999999999999988886 899999999999999999999999999999973

>KOG0318|consensus

Probab=100.00  E-value=2.7e-35  Score=263.15  Aligned_cols=285  Identities=22%  Similarity=0.390  Sum_probs=249.2

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--EEEEecccccCeeeEEECCCCCEEEEEeCC----CcE
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE--YERALHGHLDSVQDIAFDQSGKLLVSCSAD----MSL  172 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d----~~i  172 (406)
                      ...+..|..+++...|+|.|.++|+|...|+|||||....+  +...++.-.++|.+++|+.++++|+..+..    |.+
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~  131 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV  131 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence            34577899999999999999999999999999999987643  234566677899999999999999877643    345


Q ss_pred             EEEeCCCCeEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe
Q psy226          173 KLWDMSTYQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       173 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                      .+||  ++..+..+.||...|.++.|-|... .+++|+.|++|.+|+-.-.+-..++..|...|+++.|+|||..|++++
T Consensus       132 F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g  209 (603)
T KOG0318|consen  132 FLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG  209 (603)
T ss_pred             EEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence            5665  5566788999999999999999766 599999999999998776666778889999999999999999999999


Q ss_pred             CCCeEEEEeCCCccceeEEe---cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy226          252 NDHTARVWSLATKETKAELR---GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF  328 (406)
Q Consensus       252 ~d~~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~  328 (406)
                      .||++.+||-.+++.+..+.   +|...|..++|+|+                  +..+++++.|.++||||+.+.+++.
T Consensus       210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD------------------s~~~~T~SaDkt~KIWdVs~~slv~  271 (603)
T KOG0318|consen  210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD------------------STQFLTVSADKTIKIWDVSTNSLVS  271 (603)
T ss_pred             CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC------------------CceEEEecCCceEEEEEeeccceEE
Confidence            99999999999999999888   89999999999994                  6689999999999999999999988


Q ss_pred             EEeCCC---cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          329 TLIGHD---NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       329 ~~~~h~---~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ++.--.   +.-..+-|.  ...|++.|.+|+|.+++.......+.+.+|...|++|+.+|++.+|.||+.||.|.-|+.
T Consensus       272 t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~  349 (603)
T KOG0318|consen  272 TWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS  349 (603)
T ss_pred             EeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence            876432   223344554  568999999999999999999999999999999999999999999999999999999985

>KOG0640|consensus

Probab=100.00  E-value=2e-36  Score=254.19  Aligned_cols=293  Identities=25%  Similarity=0.447  Sum_probs=243.7

Q ss_pred             CCCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------------C------cEEEEecccccCeeeEEE
Q psy226           95 RAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYET------------G------EYERALHGHLDSVQDIAF  156 (406)
Q Consensus        95 ~~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~------------~------~~~~~~~~h~~~V~~l~~  156 (406)
                      ..-+...+..|.+++.+.+|+|||.++||||.|..|+|.|++.            +      -.++++..|.++|+++.|
T Consensus       101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F  180 (430)
T KOG0640|consen  101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF  180 (430)
T ss_pred             cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence            3345556889999999999999999999999999999999872            1      246778889999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCeEEEEE--ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe---ecC
Q psy226          157 DQSGKLLVSCSADMSLKLWDMSTYQCLKTM--QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL---TGH  231 (406)
Q Consensus       157 ~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~~  231 (406)
                      +|....|++|+.|++|++||+......+.+  .....+|.++.|+|.|.+|+.|..-.++++||+.+.+|...-   ..|
T Consensus       181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh  260 (430)
T KOG0640|consen  181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH  260 (430)
T ss_pred             cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence            999999999999999999999753322111  123568999999999999999999999999999998887654   368


Q ss_pred             CccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe-cCC-ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE
Q psy226          232 REWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR-GHD-HTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT  309 (406)
Q Consensus       232 ~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  309 (406)
                      ++.|+++.+++.|++.++++.||.|++||--+.+++..+. .|. ..|.+..|..                  +++|+++
T Consensus       261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk------------------n~kyiLs  322 (430)
T KOG0640|consen  261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK------------------NGKYILS  322 (430)
T ss_pred             ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc------------------CCeEEee
Confidence            8999999999999999999999999999988887776654 454 4566777764                  6899999


Q ss_pred             EeCCCcEEEEECCCCeEEEEEeCCC-----cCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCccceee-ccccceEEEE
Q psy226          310 GSRDKTIKLWDVGSGSLLFTLIGHD-----NWVRGVTFHPGGKYLVSCGD-DKTLRVWDTANKRNMKTL-EAHSHFVTSL  382 (406)
Q Consensus       310 ~~~d~~i~lwd~~~~~~~~~~~~h~-----~~v~~l~~s~~g~~l~sgs~-d~~i~vwd~~~~~~~~~l-~~h~~~v~~l  382 (406)
                      .+.|..+++|.+.+++++....|-.     ..-+.-.|+....|++.-.+ .+.+.-||.++...+..+ -+|++.+..+
T Consensus       323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i  402 (430)
T KOG0640|consen  323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI  402 (430)
T ss_pred             cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence            9999999999999999998887642     12344567777788776543 467889999987766555 4799999999


Q ss_pred             EEeCCCCEEEEeeCCCeEEEeec
Q psy226          383 DFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       383 ~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .-+|.++-+++||.|-.+++|--
T Consensus       403 ~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  403 VHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             EeCCCCCceeeecccceeeeeee
Confidence            99999999999999999999963

>KOG0289|consensus

Probab=100.00  E-value=8.2e-36  Score=260.67  Aligned_cols=281  Identities=22%  Similarity=0.421  Sum_probs=252.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      ..|+++...|..+.++||+.|.++.++|..+++.+..++||...|+++.|+++...+++++.|..|+||......+....
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            45888888888889999999999999999999999999999999999999999999999999999999998877777788


Q ss_pred             ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC--CccEEEEEECCCCCEEEEEeCCCeEEEEeCCCc
Q psy226          187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH--REWVRQIKVSPDGTLLASCSNDHTARVWSLATK  264 (406)
Q Consensus       187 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~  264 (406)
                      ..|+.+|+.+..+|+|+||++++.|+++.+.|+++|.++......  .-.+++.+|+|||.+|.+|..|+.|++||+.++
T Consensus       300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~  379 (506)
T KOG0289|consen  300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ  379 (506)
T ss_pred             ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence            899999999999999999999999999999999999877665442  235789999999999999999999999999999


Q ss_pred             cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC-cCEEEEEEc
Q psy226          265 ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD-NWVRGVTFH  343 (406)
Q Consensus       265 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~-~~v~~l~~s  343 (406)
                      .....|.+|+.+|..++|+.                  +|.||+++++|+.|++||+|..+...++.-.+ ..|.++.|+
T Consensus       380 ~~~a~Fpght~~vk~i~FsE------------------NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD  441 (506)
T KOG0289|consen  380 TNVAKFPGHTGPVKAISFSE------------------NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFD  441 (506)
T ss_pred             cccccCCCCCCceeEEEecc------------------CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEc
Confidence            99999999999999999986                  69999999999999999999877666654332 369999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCC--CccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          344 PGGKYLVSCGDDKTLRVWDTAN--KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       344 ~~g~~l~sgs~d~~i~vwd~~~--~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +.|.+|+.++.|=.|++++-.+  ..++..+..|.+..+++.|....++|+++|.|..++++.+
T Consensus       442 ~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  442 QSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             CCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            9999999999887777777443  4567788889989999999999999999999999998754

>KOG0645|consensus

Probab=100.00  E-value=3.1e-35  Score=242.72  Aligned_cols=240  Identities=32%  Similarity=0.595  Sum_probs=212.0

Q ss_pred             EEEEecccccCeeeEEECCC-CCEEEEEeCCCcEEEEeCCC---CeEEEEE-ecCCcceEEEEEecCCCEEEEEeCCCcE
Q psy226          140 YERALHGHLDSVQDIAFDQS-GKLLVSCSADMSLKLWDMST---YQCLKTM-QGHDHNVTGVAFLPNSDFVLSASRDKTI  214 (406)
Q Consensus       140 ~~~~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~vwd~~~---~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i  214 (406)
                      ..+.+.+|++.+..++|+|. |..|++|+.|+.|++|+...   ..|...+ .+|...|.+++|+|.|++|++||-|.++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            35678899999999999998 88999999999999999874   5555444 4699999999999999999999999999


Q ss_pred             EEEEcCC--CeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCc---cceeEEecCCceEEEEEeCCCCCcc
Q psy226          215 KMWEVAT--GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK---ETKAELRGHDHTVECVAWAPGVASE  289 (406)
Q Consensus       215 ~iwd~~~--~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~  289 (406)
                      .||.-..  .+++.++.||...|.+++|+++|++||+|+.|+.|-||.....   +....++.|...|..+.|+|.    
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt----  161 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT----  161 (312)
T ss_pred             EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC----
Confidence            9997654  3689999999999999999999999999999999999998743   457789999999999999993    


Q ss_pred             ccccccCCCCCCCCCCEEEEEeCCCcEEEEECC---CCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy226          290 SISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG---SGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK  366 (406)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~---~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~  366 (406)
                                    ..+|++++.|++|++|+-.   .-.++.++.+|.+.|.+++|+|.|..|+++++|++++||-..+ 
T Consensus       162 --------------~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-  226 (312)
T KOG0645|consen  162 --------------EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-  226 (312)
T ss_pred             --------------cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-
Confidence                          4589999999999999876   2368899999999999999999999999999999999997552 


Q ss_pred             ccceee-ccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          367 RNMKTL-EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       367 ~~~~~l-~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                          .+ ..|+..++.++|.  ...|||++.|+.|++|.
T Consensus       227 ----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~  259 (312)
T KOG0645|consen  227 ----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFK  259 (312)
T ss_pred             ----CcchhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence                22 3478889999998  56899999999999985

>KOG0277|consensus

Probab=100.00  E-value=2.2e-36  Score=247.37  Aligned_cols=278  Identities=27%  Similarity=0.470  Sum_probs=234.1

Q ss_pred             EEEEEcCCC-CEEEEE-------eCCCcEEEEEcCCCcEEEEecc--cccCeeeEEECCCC-CEEEEEeCCCcEEEEeCC
Q psy226          110 IKVIFHPVF-SLMASC-------SEDATIRLWDYETGEYERALHG--HLDSVQDIAFDQSG-KLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       110 ~~v~~~p~~-~~latg-------s~dg~v~vwd~~~~~~~~~~~~--h~~~V~~l~~~~~g-~~l~sgs~d~~i~vwd~~  178 (406)
                      +++.|+|-. +.||.+       ...|++.|.|...++-+..+..  -.+.+.+++|+++. +.+++++.||++++||..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            468899963 344433       3478899999875443333332  34689999999864 588899999999999964


Q ss_pred             -CCeEEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC-CCCEEEEEeCCCe
Q psy226          179 -TYQCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHT  255 (406)
Q Consensus       179 -~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~  255 (406)
                       ...+++.++.|..+|.++.|++.. ..++++|.|++|++|+...+..+.++.+|...|....|+| .+++|++++.|++
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence             235678889999999999999854 4677889999999999999999999999999999999999 5789999999999


Q ss_pred             EEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC-eEEEEEeCCC
Q psy226          256 ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG-SLLFTLIGHD  334 (406)
Q Consensus       256 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~-~~~~~~~~h~  334 (406)
                      +++||++.......+..|...+.++.|+.                 .+...+++|+.|+.||.||+++- .++..+.+|.
T Consensus       172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~k-----------------y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~  234 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHNSEILCCDWSK-----------------YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG  234 (311)
T ss_pred             EEEEEecCCCceeEEEeccceeEeecccc-----------------cCCcEEEecCCCceEEEEehhhccccceeecCCc
Confidence            99999988766666889999999999986                 25678999999999999999874 4678899999


Q ss_pred             cCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC-ccceeeccccceEEEEEEeCC-CCEEEEeeCCCeEEEee
Q psy226          335 NWVRGVTFHPGG-KYLVSCGDDKTLRVWDTANK-RNMKTLEAHSHFVTSLDFHRA-HPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       335 ~~v~~l~~s~~g-~~l~sgs~d~~i~vwd~~~~-~~~~~l~~h~~~v~~l~~~~~-~~~l~sgs~Dg~v~iw~  404 (406)
                      -.|+.|+|||.. ..|+|++.|-++||||...+ ..+.+...|+.+|..++|++. ..++|+++.|+.++||+
T Consensus       235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            999999999964 67899999999999998754 456677889999999999875 46899999999999998

>KOG1407|consensus

Probab=100.00  E-value=2.6e-35  Score=241.94  Aligned_cols=284  Identities=22%  Similarity=0.398  Sum_probs=250.9

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE--EecccccCeeeEEECCC-CCEEEEEeCCCcEEEEeC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER--ALHGHLDSVQDIAFDQS-GKLLVSCSADMSLKLWDM  177 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~--~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~vwd~  177 (406)
                      .+.+|..+|.+|+|+.+|..||+|+.|++++||++...++..  ..++|++.|..++|+|. ..++++++.|.+|++||+
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence            357899999999999999999999999999999998876544  35689999999999885 579999999999999999


Q ss_pred             CCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Q psy226          178 STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTAR  257 (406)
Q Consensus       178 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~  257 (406)
                      ..+++..........| -+.|+|+|++++.++.|..|.+.|.++.+.+...+ ....++.++|+.++.+|+....-|+|.
T Consensus        95 r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   95 RSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             ccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence            9999988776555454 47899999999999999999999998876655443 345678889998888888888889999


Q ss_pred             EEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCE
Q psy226          258 VWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV  337 (406)
Q Consensus       258 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v  337 (406)
                      |.....-+++..++.|.....|+.|.|                  .|+|||+|+.|-.+.+||+..--|++.+..++=+|
T Consensus       173 ILsypsLkpv~si~AH~snCicI~f~p------------------~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpV  234 (313)
T KOG1407|consen  173 ILSYPSLKPVQSIKAHPSNCICIEFDP------------------DGRYFATGSADALVSLWDVDELICERCISRLDWPV  234 (313)
T ss_pred             EEeccccccccccccCCcceEEEEECC------------------CCceEeeccccceeeccChhHhhhheeeccccCce
Confidence            999999999999999999999999998                  58999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCC---------CeEEEeec
Q psy226          338 RGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVD---------KTVKVWEC  405 (406)
Q Consensus       338 ~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~D---------g~v~iw~~  405 (406)
                      +.++||-+|++||+||+|..|-|=++.+|..+..++ +.++...|+|||...+||-++.|         |.||+|-+
T Consensus       235 RTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  235 RTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             EEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence            999999999999999999999999999999888886 56788999999999999987655         67888754

>KOG0265|consensus

Probab=100.00  E-value=8.3e-36  Score=249.46  Aligned_cols=245  Identities=27%  Similarity=0.513  Sum_probs=214.3

Q ss_pred             EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q psy226          142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS-TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA  220 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~  220 (406)
                      ..+.+|.+.|+.+.|+|+|..|+||+.|..|.+|++. .-+....+++|.++|..+.|.++++.+++++.|.+|+.||.+
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence            4467999999999999999999999999999999964 334456778999999999999999999999999999999999


Q ss_pred             CCeEEEEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCC
Q psy226          221 TGYCVKTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPP  299 (406)
Q Consensus       221 ~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  299 (406)
                      +|++++.+++|...|+.+.-+.-| .++.+++.|+++++||+++...++.+. ....+.++.|..               
T Consensus       121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d---------------  184 (338)
T KOG0265|consen  121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKD---------------  184 (338)
T ss_pred             cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecc---------------
Confidence            999999999999999998855544 467889999999999999877766543 245677888864               


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ccceeeccc
Q psy226          300 GQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK----RNMKTLEAH  375 (406)
Q Consensus       300 ~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~----~~~~~l~~h  375 (406)
                         .+..+.+|+-|+.|++||++.+..++++.||.+.|+.+..+|+|.++.+-+.|.++++||++..    ++++.+.+|
T Consensus       185 ---~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~  261 (338)
T KOG0265|consen  185 ---TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH  261 (338)
T ss_pred             ---cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence               3556899999999999999999999999999999999999999999999999999999998743    457777765


Q ss_pred             cce----EEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          376 SHF----VTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       376 ~~~----v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ...    ...++|+|++..+..|+.|..+.+||.
T Consensus       262 ~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~  295 (338)
T KOG0265|consen  262 IHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDT  295 (338)
T ss_pred             hhhhhhhcceeeccCCCCccccccccceEEEeec
Confidence            432    467889999999999999999999984

>KOG0305|consensus

Probab=100.00  E-value=2.5e-35  Score=270.96  Aligned_cols=272  Identities=26%  Similarity=0.424  Sum_probs=241.8

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CC
Q psy226          112 VIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQG-HD  190 (406)
Q Consensus       112 v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~-h~  190 (406)
                      +.|+ ..+.||.|. ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |.
T Consensus       183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~  260 (484)
T KOG0305|consen  183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA  260 (484)
T ss_pred             hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence            4555 345677665 45799999999997776666689999999999999999999999999999999888899998 99


Q ss_pred             cceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEE-eecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeE
Q psy226          191 HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKT-LTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAE  269 (406)
Q Consensus       191 ~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  269 (406)
                      ..|.+++|+  +..+.+|+.|+.|..+|++....... +.+|...|..+.|++|+.++|+|+.|+.+.|||.....++..
T Consensus       261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~  338 (484)
T KOG0305|consen  261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT  338 (484)
T ss_pred             ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE
Confidence            999999997  67899999999999999998765444 889999999999999999999999999999999988899999


Q ss_pred             EecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe--CCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCC
Q psy226          270 LRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS--RDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK  347 (406)
Q Consensus       270 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~  347 (406)
                      +..|...|..++|+|..                 ...||+|+  .|++|++||..+|..+..+. ..+.|++|.|++..+
T Consensus       339 ~~~H~aAVKA~awcP~q-----------------~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k  400 (484)
T KOG0305|consen  339 FTEHTAAVKALAWCPWQ-----------------SGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK  400 (484)
T ss_pred             EeccceeeeEeeeCCCc-----------------cCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC
Confidence            99999999999999963                 34677764  69999999999999887765 456799999999987


Q ss_pred             EEEEE--eCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          348 YLVSC--GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       348 ~l~sg--s~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .|+++  -.++.|.||+..+.+.+..+.+|...|..++++|||..+++|+.|.++++|+|
T Consensus       401 Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  401 ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence            77764  45779999999999999999999999999999999999999999999999986

>KOG1446|consensus

Probab=100.00  E-value=6.1e-34  Score=240.46  Aligned_cols=280  Identities=20%  Similarity=0.353  Sum_probs=242.9

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeC--CCcEEEEeCCCC
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSA--DMSLKLWDMSTY  180 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~--d~~i~vwd~~~~  180 (406)
                      ..-.+.|+++.|+++|.+|++++.|.++++||..+++..+++..+.-.|..+.|......++.++.  |.+|+..++.+.
T Consensus        11 ~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN   90 (311)
T KOG1446|consen   11 RETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN   90 (311)
T ss_pred             ccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence            335678999999999999999999999999999999999999999899999999887777777776  899999999999


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEe
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS  260 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd  260 (406)
                      +.++.+.||...|.+++.+|-++.++++|.|++|++||++...|...+..-..+  .++|+|+|-++|++.....|++||
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD  168 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYD  168 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEE
Confidence            999999999999999999999999999999999999999988887776544444  378999999999999988999999


Q ss_pred             CCCc--cceeEEe---cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc
Q psy226          261 LATK--ETKAELR---GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN  335 (406)
Q Consensus       261 ~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~  335 (406)
                      ++.-  .+-..+.   +-......+.|+|                  +|++++.+...+.+.+.|.-+|....++.++.+
T Consensus       169 ~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~------------------dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~  230 (311)
T KOG1446|consen  169 LRSFDKGPFTTFSITDNDEAEWTDLEFSP------------------DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN  230 (311)
T ss_pred             ecccCCCCceeEccCCCCccceeeeEEcC------------------CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC
Confidence            9864  2333332   2345667788877                  689999999999999999999999988887754


Q ss_pred             CE---EEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc-ccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          336 WV---RGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA-HSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       336 ~v---~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~-h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      .-   -..+|+|+++++++|+.||+|.+|+++++..+..+.+ +...+.++.|+|.-..++|+  +..+.+|=
T Consensus       231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~  301 (311)
T KOG1446|consen  231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWL  301 (311)
T ss_pred             CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEe
Confidence            32   5678999999999999999999999999999999987 78899999999987667655  56788884

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4e-34  Score=292.30  Aligned_cols=259  Identities=23%  Similarity=0.418  Sum_probs=222.8

Q ss_pred             CCcEEEEEcCCCcEEEE-----ecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC----e----EEEEEecCCcce
Q psy226          127 DATIRLWDYETGEYERA-----LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY----Q----CLKTMQGHDHNV  193 (406)
Q Consensus       127 dg~v~vwd~~~~~~~~~-----~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~----~----~~~~~~~h~~~v  193 (406)
                      +|.+++|+..+.+....     +..|...|.+++|+|+|++|++|+.|++|+|||..+.    .    ....+. +...+
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v  535 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL  535 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence            77889998887655433     3458899999999999999999999999999997531    1    122333 34678


Q ss_pred             EEEEEecC-CCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEeCCCccceeEEe
Q psy226          194 TGVAFLPN-SDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAELR  271 (406)
Q Consensus       194 ~~~~~~p~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  271 (406)
                      .+++|+|. +.+|++++.|++|++||+.++..+..+.+|...|.+++|+| ++.+|++|+.|++|++||++++.....+.
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~  615 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK  615 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence            99999874 67999999999999999999999999999999999999997 78999999999999999999888777776


Q ss_pred             cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe-EEEEEeCCCcCEEEEEEcCCCCEEE
Q psy226          272 GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS-LLFTLIGHDNWVRGVTFHPGGKYLV  350 (406)
Q Consensus       272 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~-~~~~~~~h~~~v~~l~~s~~g~~l~  350 (406)
                      .+ ..+.++.|.+.                 ++.++++|+.|+.|++||+++++ .+..+.+|...|.++.|. ++.+|+
T Consensus       616 ~~-~~v~~v~~~~~-----------------~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv  676 (793)
T PLN00181        616 TK-ANICCVQFPSE-----------------SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV  676 (793)
T ss_pred             cC-CCeEEEEEeCC-----------------CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE
Confidence            54 56888888652                 47789999999999999998866 567788999999999997 688999


Q ss_pred             EEeCCCeEEEEeCCCC------ccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          351 SCGDDKTLRVWDTANK------RNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       351 sgs~d~~i~vwd~~~~------~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +++.|++|++||+..+      ..+.++.+|...+.+++|+|++.+||+|+.||.|++|+.
T Consensus       677 s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        677 SSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             EEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence            9999999999998742      567788999999999999999999999999999999984

>KOG0300|consensus

Probab=100.00  E-value=2e-35  Score=248.93  Aligned_cols=285  Identities=28%  Similarity=0.484  Sum_probs=249.9

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeC---
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM---  177 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~---  177 (406)
                      .+.||.+.|..++-....+++.++|.|.+.+||.+++|.++..+.||.+.|+++.|++.+.+++++|.|++..||..   
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~  222 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVN  222 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999962   


Q ss_pred             ---CC------------------------------C----eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q psy226          178 ---ST------------------------------Y----QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA  220 (406)
Q Consensus       178 ---~~------------------------------~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~  220 (406)
                         ..                              +    .++..+.+|...|.+..|...|+.++++|.|.+..+||++
T Consensus       223 ~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE  302 (481)
T KOG0300|consen  223 WEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE  302 (481)
T ss_pred             CcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeec
Confidence               10                              0    1345678899999999999999999999999999999999


Q ss_pred             CCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCC
Q psy226          221 TGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPP  299 (406)
Q Consensus       221 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  299 (406)
                      +|..+..+.||....+-++-+|..+++++.+.|-+.++||++.. ..+..+++|...|.++.|..               
T Consensus       303 tge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~---------------  367 (481)
T KOG0300|consen  303 TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT---------------  367 (481)
T ss_pred             cCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec---------------
Confidence            99999999999999999999999999999999999999999743 45678999999999999975               


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCeE-EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc----eeecc
Q psy226          300 GQGGGPYLATGSRDKTIKLWDVGSGSL-LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNM----KTLEA  374 (406)
Q Consensus       300 ~~~~~~~l~s~~~d~~i~lwd~~~~~~-~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~----~~l~~  374 (406)
                          +..+++|++|.+|++||+++-+. +.++. .+++++.++.+..+..|+.--++..|++||++..+..    ..-++
T Consensus       368 ----dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg  442 (481)
T KOG0300|consen  368 ----DDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQG  442 (481)
T ss_pred             ----CCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccc
Confidence                45699999999999999987653 44443 5677999999998889999999999999998754321    23468


Q ss_pred             ccceEEEEEEeCCC--CEEEEeeCCCeEEEeec
Q psy226          375 HSHFVTSLDFHRAH--PYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       375 h~~~v~~l~~~~~~--~~l~sgs~Dg~v~iw~~  405 (406)
                      |...|+|++|..+.  +.|.++|.|..+.-|.+
T Consensus       443 HrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  443 HRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI  475 (481)
T ss_pred             cceeeeeeeccccCcccccccccccceeeeeEe
Confidence            99999999997654  46899999999999975

>KOG0299|consensus

Probab=100.00  E-value=4.3e-35  Score=258.09  Aligned_cols=279  Identities=27%  Similarity=0.489  Sum_probs=242.1

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE----EE-------------e-cccccCeeeEEECCCC
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE----RA-------------L-HGHLDSVQDIAFDQSG  160 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~----~~-------------~-~~h~~~V~~l~~~~~g  160 (406)
                      ...+..|.-+|+|++++|+..+.++++.||+|.=|++.+|+..    ..             - ++|...|.+++.++||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            4567789999999999999999999999999999999887622    11             1 2788889999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEE
Q psy226          161 KLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKV  240 (406)
Q Consensus       161 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~  240 (406)
                      ++|++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-...+.|++++.|++|++|++.....+.++.+|++.|..|..
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida  294 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA  294 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence            99999999999999999999999999999999999999988889999999999999999988888999999999999988


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEE
Q psy226          241 SPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWD  320 (406)
Q Consensus       241 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd  320 (406)
                      ..-++.+-+|+.|+++++|++. .+....+.+|...+.|++|..                   ...+++|+.||.|.+|+
T Consensus       295 L~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-------------------~~HfvsGSdnG~IaLWs  354 (479)
T KOG0299|consen  295 LSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-------------------DEHFVSGSDNGSIALWS  354 (479)
T ss_pred             hcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-------------------ccceeeccCCceEEEee
Confidence            8888888888899999999994 445567889999999999974                   45799999999999999


Q ss_pred             CCCCeEEEEEe-CC-----------CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ccceeeccccceEEEEEE
Q psy226          321 VGSGSLLFTLI-GH-----------DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK----RNMKTLEAHSHFVTSLDF  384 (406)
Q Consensus       321 ~~~~~~~~~~~-~h-----------~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~----~~~~~l~~h~~~v~~l~~  384 (406)
                      +.+.+++++.. .|           ..||++|+..|...++++||.+|.|++|-+..+    ..+..+. -.++|++|+|
T Consensus       355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f  433 (479)
T KOG0299|consen  355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAF  433 (479)
T ss_pred             ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEE
Confidence            99988887653 12           239999999999999999999999999998876    3445555 5679999999


Q ss_pred             eCCCCEEEEe-eCCC
Q psy226          385 HRAHPYVVTG-SVDK  398 (406)
Q Consensus       385 ~~~~~~l~sg-s~Dg  398 (406)
                      +++|..|++| +...
T Consensus       434 ~~sgk~ivagiGkEh  448 (479)
T KOG0299|consen  434 SNSGKRIVAGIGKEH  448 (479)
T ss_pred             ccCCCEEEEeccccc
Confidence            9999966554 4433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.3e-34  Score=258.60  Aligned_cols=247  Identities=40%  Similarity=0.732  Sum_probs=228.4

Q ss_pred             EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q psy226          142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT  221 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~  221 (406)
                      ..+.+|.++|.+++|+|++++|++++.|+.+++|++.+++....+..|...+..+.|+|+++++++++.|+.|++||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            45678999999999999999999999999999999998888888889999999999999999999999999999999999


Q ss_pred             CeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCC
Q psy226          222 GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQ  301 (406)
Q Consensus       222 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  301 (406)
                      +.....+..|...+.++.|+|++.++++++.|+.+++||+.+.+....+..|...+.++.|.|.                
T Consensus        83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------  146 (289)
T cd00200          83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD----------------  146 (289)
T ss_pred             ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc----------------
Confidence            8888888899999999999999999999988999999999988888888889999999999883                


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEE
Q psy226          302 GGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTS  381 (406)
Q Consensus       302 ~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~  381 (406)
                        +.++++++.|+.|++||+++++.+..+..|...+.++.|+|+++.+++++.|+.|++||+.+++.+..+..|...+.+
T Consensus       147 --~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~  224 (289)
T cd00200         147 --GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS  224 (289)
T ss_pred             --CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEE
Confidence              567888888999999999999999899999999999999999999999999999999999998888888889889999


Q ss_pred             EEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          382 LDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       382 l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ++|+|++.++++++.||.|++|+.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~i~i~~~~  249 (289)
T cd00200         225 VAFSPDGYLLASGSEDGTIRVWDLR  249 (289)
T ss_pred             EEEcCCCcEEEEEcCCCcEEEEEcC
Confidence            9999999999999889999999963

>KOG0310|consensus

Probab=100.00  E-value=2.3e-35  Score=261.61  Aligned_cols=278  Identities=24%  Similarity=0.432  Sum_probs=238.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      ..++|..++|+|..++=+.....-.|.+|+..+....+++....+.|.+++|..||++|+.|...|.|+|||+.+...++
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR  104 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR  104 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence            34689999999987642222234689999998888777787888999999999999999999999999999987766778


Q ss_pred             EEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCC
Q psy226          185 TMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLA  262 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~  262 (406)
                      .+..|+.++..+.|+|.++ .+++|++|+.+++||+.+......+.+|.++|++.+++|.. .+++|||.||+|++||++
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence            8899999999999999765 67789999999999999998877899999999999999964 578999999999999999


Q ss_pred             CccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC-eEEEEEeCCCcCEEEEE
Q psy226          263 TKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG-SLLFTLIGHDNWVRGVT  341 (406)
Q Consensus       263 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~-~~~~~~~~h~~~v~~l~  341 (406)
                      +......--.|..+|+.+.+.|+                  |..+++++ .+.|++||+-+| +.+..+..|...|+|++
T Consensus       185 ~~~~~v~elnhg~pVe~vl~lps------------------gs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~  245 (487)
T KOG0310|consen  185 SLTSRVVELNHGCPVESVLALPS------------------GSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLR  245 (487)
T ss_pred             cCCceeEEecCCCceeeEEEcCC------------------CCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEE
Confidence            87544444579999999999883                  56677766 457999999855 45555556999999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEE
Q psy226          342 FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKV  402 (406)
Q Consensus       342 ~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~i  402 (406)
                      +..++..|+|||-|+.++|||+.+.+.+..+.- .++|.+++.+|+++.++.|..||.+.+
T Consensus       246 l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  246 LASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             eecCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecccceeee
Confidence            999999999999999999999988888888864 568999999999999999999998754

>KOG0292|consensus

Probab=100.00  E-value=1.1e-35  Score=279.97  Aligned_cols=244  Identities=28%  Similarity=0.569  Sum_probs=224.2

Q ss_pred             ecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe
Q psy226          144 LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY  223 (406)
Q Consensus       144 ~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~  223 (406)
                      +...+..|.+++|+|.-..++++-..|.|++||..-+.++..+..|+++|.++.|+|++.++++|++|..|++|+..+.+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCC
Q psy226          224 CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGG  303 (406)
Q Consensus       224 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (406)
                      |+.++.||-++|+.+.|++.-.+++|+|.|.+||||++.+.+++..+.||.+-|.|..|.|.                  
T Consensus        85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt------------------  146 (1202)
T KOG0292|consen   85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT------------------  146 (1202)
T ss_pred             ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc------------------
Confidence            99999999999999999999999999999999999999999999999999999999999983                  


Q ss_pred             CCEEEEEeCCCcEEEEECCC--------C-------------------e--EEEEEeCCCcCEEEEEEcCCCCEEEEEeC
Q psy226          304 GPYLATGSRDKTIKLWDVGS--------G-------------------S--LLFTLIGHDNWVRGVTFHPGGKYLVSCGD  354 (406)
Q Consensus       304 ~~~l~s~~~d~~i~lwd~~~--------~-------------------~--~~~~~~~h~~~v~~l~~s~~g~~l~sgs~  354 (406)
                      ...++++|-|.+||+||+..        +                   .  ..+.+.||+..|+-++|+|.-..++||++
T Consensus       147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D  226 (1202)
T KOG0292|consen  147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD  226 (1202)
T ss_pred             cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence            56799999999999999741        1                   0  12356799999999999999999999999


Q ss_pred             CCeEEEEeCCCCc--cceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          355 DKTLRVWDTANKR--NMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       355 d~~i~vwd~~~~~--~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |+.|++|..+..+  .+.+..+|.+.|+++-|||...+++|.|.|++|++||.
T Consensus       227 DRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm  279 (1202)
T KOG0292|consen  227 DRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM  279 (1202)
T ss_pred             cceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence            9999999876543  46677899999999999999999999999999999996

>KOG0973|consensus

Probab=100.00  E-value=3.7e-34  Score=276.29  Aligned_cols=286  Identities=24%  Similarity=0.400  Sum_probs=240.2

Q ss_pred             eccCC-CCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCC------------CcEEEEecccccCeeeEEECCCCCEEEEE
Q psy226          102 LSGHR-SPVIKVIFHPVFSLMASCS--EDATIRLWDYET------------GEYERALHGHLDSVQDIAFDQSGKLLVSC  166 (406)
Q Consensus       102 l~~h~-~~V~~v~~~p~~~~latgs--~dg~v~vwd~~~------------~~~~~~~~~h~~~V~~l~~~~~g~~l~sg  166 (406)
                      +-+|. ..|+.|..||++..+|||+  .||.++||+...            .+.+..+..|.+.|+|+.|++||.+||+|
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG   87 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG   87 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence            33454 5799999999999999999  999999997542            12344567899999999999999999999


Q ss_pred             eCCCcEEEEeCC------------------CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q psy226          167 SADMSLKLWDMS------------------TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL  228 (406)
Q Consensus       167 s~d~~i~vwd~~------------------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~  228 (406)
                      |.|+.|.||...                  .+++...+.+|+..|..++|+|++.+|+++|.|++|.+||..+..+++.+
T Consensus        88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl  167 (942)
T KOG0973|consen   88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL  167 (942)
T ss_pred             cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence            999999999865                  13467889999999999999999999999999999999999999999999


Q ss_pred             ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCC------ceEEEEEeCCCCCccccccccCCCCCCC
Q psy226          229 TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHD------HTVECVAWAPGVASESISEAAGRPPGQG  302 (406)
Q Consensus       229 ~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~  302 (406)
                      .+|...|..+.|+|-|++||+-+.|++|+||++.+......+.++.      .-...+.|+|                  
T Consensus       168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP------------------  229 (942)
T KOG0973|consen  168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP------------------  229 (942)
T ss_pred             ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC------------------
Confidence            9999999999999999999999999999999977655555444332      3456777887                  


Q ss_pred             CCCEEEEEeC----CCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCC-------------CC----EEEEEeCCCeEEEE
Q psy226          303 GGPYLATGSR----DKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPG-------------GK----YLVSCGDDKTLRVW  361 (406)
Q Consensus       303 ~~~~l~s~~~----d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~-------------g~----~l~sgs~d~~i~vw  361 (406)
                      +|.+|++...    -.++.|.+-.+-+.-..|.||..++.++.|+|.             ..    .+|+||.|++|.||
T Consensus       230 DG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW  309 (942)
T KOG0973|consen  230 DGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW  309 (942)
T ss_pred             CcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence            4777777543    236888888777778899999999999999982             11    57899999999999


Q ss_pred             eCCCCccceee-ccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          362 DTANKRNMKTL-EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       362 d~~~~~~~~~l-~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .....+++-.. +-....|.+++|+|||..|..+|.||+|.+..+
T Consensus       310 ~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F  354 (942)
T KOG0973|consen  310 NTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF  354 (942)
T ss_pred             ecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence            99877765443 223557999999999999999999999998764

>KOG0296|consensus

Probab=100.00  E-value=8.5e-34  Score=243.23  Aligned_cols=249  Identities=24%  Similarity=0.391  Sum_probs=215.0

Q ss_pred             CCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEE
Q psy226           96 APEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW  175 (406)
Q Consensus        96 ~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vw  175 (406)
                      .+....+.||.+.|+|+.|+.++.+||||+.+|.|+||+..++.....+......+.=+.|+|.+..|+.|+.||.+-+|
T Consensus        96 ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw  175 (399)
T KOG0296|consen   96 GEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMW  175 (399)
T ss_pred             CcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEE
Confidence            34566789999999999999999999999999999999999998887776556677778999999999999999999999


Q ss_pred             eCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeec------C------------------
Q psy226          176 DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG------H------------------  231 (406)
Q Consensus       176 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~------~------------------  231 (406)
                      .+.+....+.+.||+.++++-.|.|+|+.++++..||+|++||..++..+..+.+      +                  
T Consensus       176 ~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~  255 (399)
T KOG0296|consen  176 QIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG  255 (399)
T ss_pred             ECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc
Confidence            9998778899999999999999999999999999999999999999887665541      0                  


Q ss_pred             ---------------------------CccEEE---EEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEE
Q psy226          232 ---------------------------REWVRQ---IKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVA  281 (406)
Q Consensus       232 ---------------------------~~~v~~---l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~  281 (406)
                                                 ...+.+   +.++..-.+.|.|+.||+|.|||+........+ .|+.+|..+.
T Consensus       256 ~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~  334 (399)
T KOG0296|consen  256 VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLK  334 (399)
T ss_pred             cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEE
Confidence                                       000111   222223356788999999999999877665544 5888899999


Q ss_pred             eCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy226          282 WAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVW  361 (406)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vw  361 (406)
                      |.+                   ..+|++++.||.|+.||.++|++++++.||...|.+++++|++++++|+|.|++.+||
T Consensus       335 w~~-------------------t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF  395 (399)
T KOG0296|consen  335 WLN-------------------TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVF  395 (399)
T ss_pred             EcC-------------------cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence            986                   3589999999999999999999999999999999999999999999999999999999


Q ss_pred             eCC
Q psy226          362 DTA  364 (406)
Q Consensus       362 d~~  364 (406)
                      +..
T Consensus       396 ~v~  398 (399)
T KOG0296|consen  396 EVP  398 (399)
T ss_pred             ecC
Confidence            864

>KOG0268|consensus

Probab=100.00  E-value=1.8e-35  Score=253.24  Aligned_cols=284  Identities=21%  Similarity=0.384  Sum_probs=237.6

Q ss_pred             CceEEeccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEE
Q psy226           97 PEKFALSGHRSPVIKVIFHPVF-SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW  175 (406)
Q Consensus        97 ~~~~~l~~h~~~V~~v~~~p~~-~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vw  175 (406)
                      |....|.||.+.|.|++=||.. ..+|||+.||.|++||+.+.+...++..|.+.|..|++..  ..+++++.|.+|+.|
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW  134 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence            4445689999999999999987 8999999999999999999999999999999999999987  678899999999999


Q ss_pred             eCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCC-CEEEEEeCCC
Q psy226          176 DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG-TLLASCSNDH  254 (406)
Q Consensus       176 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~  254 (406)
                      .+.. ..++++.+ +..+..+.-+..++.++||+.  .|-|||.....++.++.-..+.|.++.|+|-. ..|++|+.|+
T Consensus       135 k~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr  210 (433)
T KOG0268|consen  135 KIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR  210 (433)
T ss_pred             eccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence            8765 35556554 445667777667778888876  48899999888999999888999999999965 5677888999


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC-eEEEEEeCC
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG-SLLFTLIGH  333 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~-~~~~~~~~h  333 (406)
                      .|.+||++...++..+.. .-....++|+|.                  +..+++|+.|..++.||++.- .++....+|
T Consensus       211 sIvLyD~R~~~Pl~KVi~-~mRTN~IswnPe------------------afnF~~a~ED~nlY~~DmR~l~~p~~v~~dh  271 (433)
T KOG0268|consen  211 SIVLYDLRQASPLKKVIL-TMRTNTICWNPE------------------AFNFVAANEDHNLYTYDMRNLSRPLNVHKDH  271 (433)
T ss_pred             ceEEEecccCCccceeee-eccccceecCcc------------------ccceeeccccccceehhhhhhcccchhhccc
Confidence            999999999887655432 223457889882                  335889999999999999874 456778899


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc-ccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          334 DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA-HSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       334 ~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~-h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .+.|.+|+|||.|+.+++||.|++|+||..+.+..-..... .-..|.|+.|+.|.+|++|||.|+.|++|..
T Consensus       272 vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  272 VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence            99999999999999999999999999999887654333311 2235899999999999999999999999964

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=3.5e-33  Score=265.70  Aligned_cols=266  Identities=19%  Similarity=0.254  Sum_probs=214.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE-------------EEecccccCeeeEEECC-CCCEEEEEeCCC
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE-------------RALHGHLDSVQDIAFDQ-SGKLLVSCSADM  170 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~-------------~~~~~h~~~V~~l~~~~-~g~~l~sgs~d~  170 (406)
                      |...|.....++++..+++++.+..+..|+...+...             ..+.+|.+.|.+++|+| ++.+|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            4556777778888777888888888888876554322             24678999999999999 889999999999


Q ss_pred             cEEEEeCCCC-------eEEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC
Q psy226          171 SLKLWDMSTY-------QCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP  242 (406)
Q Consensus       171 ~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  242 (406)
                      +|++||+.+.       ..+..+.+|...|.+++|+|++ ++|++|+.|++|++||+.++..+..+.+|...|.+++|+|
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp  178 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL  178 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence            9999999754       3467889999999999999985 6899999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCccceeEEecCCce-EEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe----CCCcEE
Q psy226          243 DGTLLASCSNDHTARVWSLATKETKAELRGHDHT-VECVAWAPGVASESISEAAGRPPGQGGGPYLATGS----RDKTIK  317 (406)
Q Consensus       243 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----~d~~i~  317 (406)
                      +|.+|++++.|++|++||++++..+..+.+|... +..+.|.+.                  +..+++++    .|+.|+
T Consensus       179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~------------------~~~ivt~G~s~s~Dr~Vk  240 (493)
T PTZ00421        179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR------------------KDLIITLGCSKSQQRQIM  240 (493)
T ss_pred             CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC------------------CCeEEEEecCCCCCCeEE
Confidence            9999999999999999999999888888888764 345667663                  23444433    589999


Q ss_pred             EEECCCCe-EEEEEeC-CCcCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCccceeecc-ccceEEEEEEeCCC
Q psy226          318 LWDVGSGS-LLFTLIG-HDNWVRGVTFHPGGKYLVSCG-DDKTLRVWDTANKRNMKTLEA-HSHFVTSLDFHRAH  388 (406)
Q Consensus       318 lwd~~~~~-~~~~~~~-h~~~v~~l~~s~~g~~l~sgs-~d~~i~vwd~~~~~~~~~l~~-h~~~v~~l~~~~~~  388 (406)
                      +||+++.. ++..... +...+....|++++++|++|+ .|+.|++||+.+++.+..+.. +...+..++|.|..
T Consensus       241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            99998754 3333332 334566678999999999887 599999999998887665543 34456777887743

>KOG0274|consensus

Probab=100.00  E-value=8.3e-34  Score=270.28  Aligned_cols=244  Identities=36%  Similarity=0.565  Sum_probs=225.6

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~  181 (406)
                      +.||.+.|.+++|..-+..|++|+.|.+++|||..+|+....+.+|...|.++...+  .++++||.|.+|++|++.++.
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~  322 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA  322 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc
Confidence            789999999999998889999999999999999999999999999999999998854  588889999999999999999


Q ss_pred             EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy226          182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSL  261 (406)
Q Consensus       182 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~  261 (406)
                      ++..+.+|..+|.++.++  +.++++|+.|++|++||+.++++++++.+|..+|.++.+.+. ..+++|+.|++|++||+
T Consensus       323 ~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl  399 (537)
T KOG0274|consen  323 CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDL  399 (537)
T ss_pred             eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecC
Confidence            999999999999999997  889999999999999999999999999999999999988766 89999999999999999


Q ss_pred             CCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC-CCcCEEE
Q psy226          262 ATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG-HDNWVRG  339 (406)
Q Consensus       262 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~-h~~~v~~  339 (406)
                      ++. +++..+.+|...+..+..                    .+.+|++++.|++|++||..++.++..+.+ |...|..
T Consensus       400 ~~~~~c~~tl~~h~~~v~~l~~--------------------~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~  459 (537)
T KOG0274|consen  400 RTKRKCIHTLQGHTSLVSSLLL--------------------RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSA  459 (537)
T ss_pred             CchhhhhhhhcCCccccccccc--------------------ccceeEeccccccEEEeecccCceeeeeccCCcccEEE
Confidence            999 899999999988865544                    356899999999999999999999999998 6788888


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCccceee
Q psy226          340 VTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL  372 (406)
Q Consensus       340 l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l  372 (406)
                      +++.  ...+++++.||++++||+++++.+..+
T Consensus       460 l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  460 LALG--KEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             eecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence            8876  468899999999999999999888766

>KOG0301|consensus

Probab=100.00  E-value=7.2e-34  Score=261.63  Aligned_cols=278  Identities=26%  Similarity=0.448  Sum_probs=241.7

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE--EecccccCeee-EEECC-CCCEEEEEeCCCcEE
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER--ALHGHLDSVQD-IAFDQ-SGKLLVSCSADMSLK  173 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~--~~~~h~~~V~~-l~~~~-~g~~l~sgs~d~~i~  173 (406)
                      ....+.||...|..+++.+. ..++++|.||++++|+-..+++..  .+.+|.+-|.. +++.+ ++-+|++|+.|.+|.
T Consensus         6 ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~   84 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII   84 (745)
T ss_pred             eEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence            34578999999988887654 489999999999999987776654  46677777776 77775 455799999999999


Q ss_pred             EEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCC
Q psy226          174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                      +|...+..++.++++|...|.+++...++. +++||.|.++++|-.  +++...+.+|+..|.+++.-|++ .++||+.|
T Consensus        85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaD  160 (745)
T KOG0301|consen   85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSAD  160 (745)
T ss_pred             EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCc
Confidence            999999999999999999999999876666 999999999999965  56777799999999999999988 89999999


Q ss_pred             CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC
Q psy226          254 HTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH  333 (406)
Q Consensus       254 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h  333 (406)
                      ++|++|.-  ++.+.++.+|+..|+.++..|+                   ..++++++||.|++|++ +|.++.++.+|
T Consensus       161 KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-------------------~~flScsNDg~Ir~w~~-~ge~l~~~~gh  218 (745)
T KOG0301|consen  161 KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-------------------SHFLSCSNDGSIRLWDL-DGEVLLEMHGH  218 (745)
T ss_pred             ceeeeccC--CchhhhhccchhheeeeEEecC-------------------CCeEeecCCceEEEEec-cCceeeeeecc
Confidence            99999975  6678889999999999998873                   35899999999999999 88999999999


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          334 DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       334 ~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .+.|.+++..+++..++|+++|++++||+..  .+.+.+.--...|+++.+-++|. +++|+.||.|+||..
T Consensus       219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~  287 (745)
T KOG0301|consen  219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTV  287 (745)
T ss_pred             ceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence            9999999988888999999999999999876  67777765555799999888886 566888999999964

>KOG0772|consensus

Probab=100.00  E-value=5.6e-34  Score=254.14  Aligned_cols=287  Identities=20%  Similarity=0.326  Sum_probs=234.9

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE-----EEEecccccCeeeEEECCCCCEEEEEeCCCcEE
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY-----ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK  173 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~-----~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~  173 (406)
                      ...+++|+..|.++++.|.|..|+|||.|.+|++||+.....     ..........|+++.|++.|..|++.+....++
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            346889999999999999999999999999999999886532     222234556899999999999999999899999


Q ss_pred             EEeCCCCeEEE------------EEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCeE-EEEe-----ecCCcc
Q psy226          174 LWDMSTYQCLK------------TMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGYC-VKTL-----TGHREW  234 (406)
Q Consensus       174 vwd~~~~~~~~------------~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~~-~~~~-----~~~~~~  234 (406)
                      |+|-...+...            ..+||...++|.+|+|.. +.+++++.||++|+||+...+. .+.+     .+.+-.
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP  319 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence            99976554332            346899999999999976 4789999999999999976432 2222     244567


Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEeCCCccc---eeEEecCCc--eEEEEEeCCCCCccccccccCCCCCCCCCCEEEE
Q psy226          235 VRQIKVSPDGTLLASCSNDHTARVWSLATKET---KAELRGHDH--TVECVAWAPGVASESISEAAGRPPGQGGGPYLAT  309 (406)
Q Consensus       235 v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  309 (406)
                      ++.++|+|+|++||+|+.||.|.+|+..+...   ...-..|..  .|.|+.|++                  +|++|++
T Consensus       320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~------------------dg~~LlS  381 (641)
T KOG0772|consen  320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY------------------DGNYLLS  381 (641)
T ss_pred             ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc------------------ccchhhh
Confidence            88999999999999999999999999865322   233456776  899999998                  5889999


Q ss_pred             EeCCCcEEEEECCCC-eEEEEEeCCC--cCEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCccceeeccccceEE
Q psy226          310 GSRDKTIKLWDVGSG-SLLFTLIGHD--NWVRGVTFHPGGKYLVSCGD------DKTLRVWDTANKRNMKTLEAHSHFVT  380 (406)
Q Consensus       310 ~~~d~~i~lwd~~~~-~~~~~~~~h~--~~v~~l~~s~~g~~l~sgs~------d~~i~vwd~~~~~~~~~l~~h~~~v~  380 (406)
                      -+.|+++++||++.. +++....+-.  -.-+.++|||+.+.|++|..      .|.+.+||..+...++++..-...|.
T Consensus       382 Rg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv  461 (641)
T KOG0772|consen  382 RGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVV  461 (641)
T ss_pred             ccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEE
Confidence            999999999999875 4555554433  24578899999999999864      57899999999999998877777888


Q ss_pred             EEEEeCCCCEEEEeeCCCeEEEe
Q psy226          381 SLDFHRAHPYVVTGSVDKTVKVW  403 (406)
Q Consensus       381 ~l~~~~~~~~l~sgs~Dg~v~iw  403 (406)
                      .+.|||.-+.|..|+.||+++++
T Consensus       462 ~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  462 RCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             EEeecchhhheeeecCCCceEEE
Confidence            99999999999999999999987

>KOG0313|consensus

Probab=100.00  E-value=9.2e-34  Score=244.11  Aligned_cols=250  Identities=35%  Similarity=0.573  Sum_probs=216.8

Q ss_pred             CCCceEEeccCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCcEE----EEecccccCeeeEEECCCCCEEEEEe
Q psy226           95 RAPEKFALSGHRSPVIKVIFHPVF---SLMASCSEDATIRLWDYETGEYE----RALHGHLDSVQDIAFDQSGKLLVSCS  167 (406)
Q Consensus        95 ~~~~~~~l~~h~~~V~~v~~~p~~---~~latgs~dg~v~vwd~~~~~~~----~~~~~h~~~V~~l~~~~~g~~l~sgs  167 (406)
                      .......+.||.++|..+++.-..   ..|+++|.|.++++|.++.++..    +...||...|.++...++|.++++||
T Consensus       133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS  212 (423)
T KOG0313|consen  133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS  212 (423)
T ss_pred             CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence            345567788999999988875433   36999999999999998887642    33459999999999999999999999


Q ss_pred             CCCcEEEEeCCC-------------------------CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q psy226          168 ADMSLKLWDMST-------------------------YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG  222 (406)
Q Consensus       168 ~d~~i~vwd~~~-------------------------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~  222 (406)
                      .|.++++|+..+                         ..++-++.||..+|.++.|.+ ...++++|.|.+|+.||+.++
T Consensus       213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg  291 (423)
T KOG0313|consen  213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG  291 (423)
T ss_pred             ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence            999999999321                         224567899999999999987 678999999999999999999


Q ss_pred             eEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCcc---ceeEEecCCceEEEEEeCCCCCccccccccCCCC
Q psy226          223 YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKE---TKAELRGHDHTVECVAWAPGVASESISEAAGRPP  299 (406)
Q Consensus       223 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  299 (406)
                      .++.++.+. ...+++..+|...+|++|+.|..+++||.+++.   ..+.+.+|..-|.++.|+|.              
T Consensus       292 ~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~--------------  356 (423)
T KOG0313|consen  292 GLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT--------------  356 (423)
T ss_pred             cceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC--------------
Confidence            988887654 568999999999999999999999999998764   35678899999999999995              


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCe-EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          300 GQGGGPYLATGSRDKTIKLWDVGSGS-LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       300 ~~~~~~~l~s~~~d~~i~lwd~~~~~-~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                         +...|++|+.|+++++||+|+.+ +++.+.+|...|.++.|+ .+..|++||.|++|+|+...
T Consensus       357 ---~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  357 ---NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ---CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence               45579999999999999999887 899999999999999997 46799999999999998643

>KOG0277|consensus

Probab=100.00  E-value=1.9e-34  Score=235.99  Aligned_cols=242  Identities=24%  Similarity=0.404  Sum_probs=210.8

Q ss_pred             CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCC-cEEEEecccccCeeeEEECCC-CCEEEEEeCCCcEEEEeCCCCe
Q psy226          105 HRSPVIKVIFHPV-FSLMASCSEDATIRLWDYETG-EYERALHGHLDSVQDIAFDQS-GKLLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       105 h~~~V~~v~~~p~-~~~latgs~dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~vwd~~~~~  181 (406)
                      -.+.++.|+|++. .+.+++++.||++++||.... ..+..++.|...|.++.|++. +..++++|-|++||+|+....+
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            3567999999987 468999999999999995432 356678899999999999984 5678888999999999999889


Q ss_pred             EEEEEecCCcceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEE
Q psy226          182 CLKTMQGHDHNVTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVW  259 (406)
Q Consensus       182 ~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~v~vw  259 (406)
                      .+.++.||+..|...+|+| ..++++++|.|+++++||++..-....+..|...+.++.|+. +.+.+++|+.|+.||.|
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW  218 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence            9999999999999999999 567999999999999999986555555889999999999987 66789999999999999


Q ss_pred             eCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCcCE
Q psy226          260 SLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS-GSLLFTLIGHDNWV  337 (406)
Q Consensus       260 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~-~~~~~~~~~h~~~v  337 (406)
                      |++.. .++.++.+|.-.|+.++|+|..                 ...|++++.|-++||||... ..++.+...|+..|
T Consensus       219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~-----------------~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv  281 (311)
T KOG0277|consen  219 DIRNLRTPLFELNGHGLAVRKVKFSPHH-----------------ASLLASASYDMTVRIWDPERQDSAIETVDHHTEFV  281 (311)
T ss_pred             ehhhccccceeecCCceEEEEEecCcch-----------------hhHhhhccccceEEecccccchhhhhhhhccceEE
Confidence            99874 4678899999999999999964                 34799999999999999874 45566777899999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEeC
Q psy226          338 RGVTFHP-GGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       338 ~~l~~s~-~g~~l~sgs~d~~i~vwd~  363 (406)
                      ..+.||+ ++.++|+++.|+.++||+.
T Consensus       282 ~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  282 CGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             eccccccccCceeeecccccceeeecc
Confidence            9999998 5678999999999999984

>KOG0641|consensus

Probab=100.00  E-value=5.3e-32  Score=218.23  Aligned_cols=284  Identities=26%  Similarity=0.429  Sum_probs=234.1

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------Cc---------EEEEecccccCeeeEEECCCCCEEEEEe
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYET------GE---------YERALHGHLDSVQDIAFDQSGKLLVSCS  167 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~------~~---------~~~~~~~h~~~V~~l~~~~~g~~l~sgs  167 (406)
                      -.....|.+|+|||.|.+.|.||...+++|-.+..      +.         .-+.-+.|.+.|.|.+|+|+|.+|++|+
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence            34567899999999999999999999999975432      11         1123356889999999999999999999


Q ss_pred             CCCcEEEEeCCCCeE-----EEEEecCCcceEEEEEecC----CCEEEEE-eCCCcEEEEEcCCCeEEEEeecCCccEEE
Q psy226          168 ADMSLKLWDMSTYQC-----LKTMQGHDHNVTGVAFLPN----SDFVLSA-SRDKTIKMWEVATGYCVKTLTGHREWVRQ  237 (406)
Q Consensus       168 ~d~~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~p~----~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~v~~  237 (406)
                      +|.+|++..+....+     -..+.-|++.|..++|..+    +..|+++ ..|..|.+-|..+|+..+.+.+|.+-|.+
T Consensus       109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila  188 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA  188 (350)
T ss_pred             CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence            999999987653222     1346678999999999754    3466664 45788888899999999999999998877


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCccceeEEec--C-----CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEE
Q psy226          238 IKVSPDGTLLASCSNDHTARVWSLATKETKAELRG--H-----DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATG  310 (406)
Q Consensus       238 l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  310 (406)
                      + ++-+|-+|++|+.|.+||+||++-...+..+..  |     ...|..++..|                  .|.+|++|
T Consensus       189 l-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp------------------sgrll~sg  249 (350)
T KOG0641|consen  189 L-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP------------------SGRLLASG  249 (350)
T ss_pred             E-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC------------------Ccceeeec
Confidence            6 456788999999999999999998777665532  2     24566777766                  58899999


Q ss_pred             eCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ccceeeccccceEEEEEEeC
Q psy226          311 SRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK----RNMKTLEAHSHFVTSLDFHR  386 (406)
Q Consensus       311 ~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~----~~~~~l~~h~~~v~~l~~~~  386 (406)
                      ..|....+||++.++.+..+..|...|+++.|+|...|+++||.|..|++=|+...    -.+-....|...+..+.|||
T Consensus       250 ~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~  329 (350)
T KOG0641|consen  250 HADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP  329 (350)
T ss_pred             cCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC
Confidence            99999999999999999999999999999999999999999999999999998531    12233456888888999999


Q ss_pred             CCCEEEEeeCCCeEEEeec
Q psy226          387 AHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       387 ~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ..--+++.|.|.++.+|.+
T Consensus       330 ~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  330 QDFSFISSSADKTATLWAL  348 (350)
T ss_pred             ccceeeeccCcceEEEecc
Confidence            9999999999999999975

>KOG0283|consensus

Probab=100.00  E-value=1.4e-33  Score=265.97  Aligned_cols=244  Identities=23%  Similarity=0.419  Sum_probs=202.6

Q ss_pred             ec-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--------------------------------Cc---------
Q psy226          102 LS-GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYET--------------------------------GE---------  139 (406)
Q Consensus       102 l~-~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~--------------------------------~~---------  139 (406)
                      +. .|.+.|.++.|++||++||+||.||.|+||.+..                                ..         
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            44 7999999999999999999999999999997654                                00         


Q ss_pred             -------------------EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEec
Q psy226          140 -------------------YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP  200 (406)
Q Consensus       140 -------------------~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p  200 (406)
                                         ....+.||++.|.+|.|+.+ .+|+++|.|.|||+|++....|++.+. |.+-|+|++|+|
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP  419 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP  419 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence                               01235699999999999975 689999999999999999999998886 999999999999


Q ss_pred             -CCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEec--C----
Q psy226          201 -NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRG--H----  273 (406)
Q Consensus       201 -~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~----  273 (406)
                       |.+|+++|+.|+.||||++...+.+.-... .+-|++++|.|||+..+.|+.+|.+++|+....+......-  |    
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk  498 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK  498 (712)
T ss_pred             cCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence             667999999999999999987765544333 37899999999999999999999999999876655433221  1    


Q ss_pred             --CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcC--EEEEEEcCCCCEE
Q psy226          274 --DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNW--VRGVTFHPGGKYL  349 (406)
Q Consensus       274 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~--v~~l~~s~~g~~l  349 (406)
                        ...|+.+.+.|..                 ...+++.+.|..|||||.++..++..|+|+.+.  -..-.|+.||++|
T Consensus       499 ~~~~rITG~Q~~p~~-----------------~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I  561 (712)
T KOG0283|consen  499 KQGKRITGLQFFPGD-----------------PDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI  561 (712)
T ss_pred             ccCceeeeeEecCCC-----------------CCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence              1278999988853                 224777889999999999998999888886432  2345889999999


Q ss_pred             EEEeCCCeEEEEeCCC
Q psy226          350 VSCGDDKTLRVWDTAN  365 (406)
Q Consensus       350 ~sgs~d~~i~vwd~~~  365 (406)
                      +++++|..|+||+...
T Consensus       562 Vs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  562 VSASEDSWVYIWKNDS  577 (712)
T ss_pred             EEeecCceEEEEeCCC
Confidence            9999999999999743

>KOG0282|consensus

Probab=100.00  E-value=1.5e-34  Score=256.14  Aligned_cols=249  Identities=24%  Similarity=0.449  Sum_probs=219.1

Q ss_pred             cEEEEecccccCeeeEEECC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEE
Q psy226          139 EYERALHGHLDSVQDIAFDQ-SGKLLVSCSADMSLKLWDMST-YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKM  216 (406)
Q Consensus       139 ~~~~~~~~h~~~V~~l~~~~-~g~~l~sgs~d~~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~i  216 (406)
                      +....+.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.|++++.||..+|..++|+++|..++++|.|+.|++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            45677899999999999999 889999999999999999875 8999999999999999999999999999999999999


Q ss_pred             EEcCCCeEEEEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCcccccccc
Q psy226          217 WEVATGYCVKTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAA  295 (406)
Q Consensus       217 wd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  295 (406)
                      ||+++|.++..+.. ...+.++.|.|++ +.|++|+.|+.|+.||+++++.+++...|-..|..+.|.+           
T Consensus       285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-----------  352 (503)
T KOG0282|consen  285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-----------  352 (503)
T ss_pred             eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-----------
Confidence            99999999988864 3457899999998 8899999999999999999999999999999999999987           


Q ss_pred             CCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---cccee
Q psy226          296 GRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK---RNMKT  371 (406)
Q Consensus       296 ~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~-h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~---~~~~~  371 (406)
                             .|..+++.++|++++||+.+.+..+..... +.....++..+|++.+++.=+.|+.|.++.+...   ...+.
T Consensus       353 -------~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~  425 (503)
T KOG0282|consen  353 -------EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKR  425 (503)
T ss_pred             -------CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhh
Confidence                   578899999999999999988776654332 2335678999999999999999999999986542   23345


Q ss_pred             ecccc--ceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          372 LEAHS--HFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       372 l~~h~--~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +.+|.  +.-..+.|+|||.+|++|+.||.+.+||-+
T Consensus       426 feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  426 FEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK  462 (503)
T ss_pred             hcceeccCceeeEEEcCCCCeEEeecCCccEEEeech
Confidence            67773  456788999999999999999999999954

>KOG0294|consensus

Probab=100.00  E-value=1.4e-32  Score=231.70  Aligned_cols=263  Identities=23%  Similarity=0.402  Sum_probs=216.9

Q ss_pred             CceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCC--EEEEEeCCCcEEE
Q psy226           97 PEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK--LLVSCSADMSLKL  174 (406)
Q Consensus        97 ~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~--~l~sgs~d~~i~v  174 (406)
                      .+.+.+..|.++|+++|.+  ++++|+||.|-+|+|||+........+-.|.+.|+++.|.+.-.  .|++|+.||.|.+
T Consensus        34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            3456788999999999986  78999999999999999999888888889999999999998764  8999999999999


Q ss_pred             EeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          175 WDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       175 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      |+...+.++.++++|.+.|+.++.+|.+++.++.+.|+.+++||+-+|+.-..+.-. .....+.|+|.|.+|+.++.+ 
T Consensus       112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~-  189 (362)
T KOG0294|consen  112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLVSWSPQGDHFVVSGRN-  189 (362)
T ss_pred             EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-CcceeeEEcCCCCEEEEEecc-
Confidence            999999999999999999999999999999999999999999999888755444322 223448999999999888766 


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD  334 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~  334 (406)
                      .|-+|.+.+......+... ..+.|+.|.                   .+.+|++|..|+.|++||..++.+...+.+|.
T Consensus       190 ~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-------------------~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~  249 (362)
T KOG0294|consen  190 KIDIYQLDNASVFREIENP-KRILCATFL-------------------DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE  249 (362)
T ss_pred             EEEEEecccHhHhhhhhcc-ccceeeeec-------------------CCceEEEecCCceEEEeccCCCccceeeecch
Confidence            5788988765443332211 235555554                   36689999999999999999999999999999


Q ss_pred             cCEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCC-----ccceeeccccceEEEEEE
Q psy226          335 NWVRGVTF--HPGGKYLVSCGDDKTLRVWDTANK-----RNMKTLEAHSHFVTSLDF  384 (406)
Q Consensus       335 ~~v~~l~~--s~~g~~l~sgs~d~~i~vwd~~~~-----~~~~~l~~h~~~v~~l~~  384 (406)
                      +.|.++.+  .|.+.+|+|+|+||.|+|||++..     ..+..++. ...++|+..
T Consensus       250 ~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~  305 (362)
T KOG0294|consen  250 NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV  305 (362)
T ss_pred             hheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence            99999984  567899999999999999999765     33444443 345666554

>KOG0306|consensus

Probab=100.00  E-value=6.5e-32  Score=250.71  Aligned_cols=297  Identities=25%  Similarity=0.450  Sum_probs=244.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      -..+|+|++-+|+..+||.|..||.|+||+..++...-++.||...|+.+.|+..|.+|++||.|+.|.+||+-...-+.
T Consensus        64 ~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~  143 (888)
T KOG0306|consen   64 KKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLF  143 (888)
T ss_pred             ccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeE
Confidence            34689999999999999999999999999999998889999999999999999999999999999999999998877788


Q ss_pred             EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCc
Q psy226          185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK  264 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~  264 (406)
                      .+.||.+.|+.+-|....+++++.+.|+.|++||+.+..|..+...|+..+..+++.+  +.+++++.|+.+++|++...
T Consensus       144 rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~  221 (888)
T KOG0306|consen  144 RLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFE  221 (888)
T ss_pred             EeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecc
Confidence            9999999999999998788999999999999999999999999999999999999987  78999999999999998211


Q ss_pred             ------------------------cceeEEecC-----------------------------------------------
Q psy226          265 ------------------------ETKAELRGH-----------------------------------------------  273 (406)
Q Consensus       265 ------------------------~~~~~~~~~-----------------------------------------------  273 (406)
                                              +.+.....+                                               
T Consensus       222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~  301 (888)
T KOG0306|consen  222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED  301 (888)
T ss_pred             cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence                                    000000000                                               


Q ss_pred             ------------------CceEEEEEeCCCCCcc---------c-----ccc-ccCCCCC----------C---------
Q psy226          274 ------------------DHTVECVAWAPGVASE---------S-----ISE-AAGRPPG----------Q---------  301 (406)
Q Consensus       274 ------------------~~~v~~~~~~~~~~~~---------~-----~~~-~~~~~~~----------~---------  301 (406)
                                        ...+.++.|.|+....         .     +.. ....|.+          .         
T Consensus       302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v  381 (888)
T KOG0306|consen  302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV  381 (888)
T ss_pred             chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence                              1123334444432222         0     000 0000000          0         


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEE
Q psy226          302 GGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTS  381 (406)
Q Consensus       302 ~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~  381 (406)
                      .....++..+..+.+++|+..+.++++++..-  .+.+..|-|.++++++|...|.+.+||+.+...+.++.+|.+.|.+
T Consensus       382 S~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWs  459 (888)
T KOG0306|consen  382 SSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWS  459 (888)
T ss_pred             ecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceee
Confidence            01223333444678999999999999998743  8999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCEEEEeeCCCeEEEeec
Q psy226          382 LDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       382 l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ++..||+..+++||.|.+|++||.
T Consensus       460 i~~~pD~~g~vT~saDktVkfWdf  483 (888)
T KOG0306|consen  460 ISLSPDNKGFVTGSADKTVKFWDF  483 (888)
T ss_pred             eeecCCCCceEEecCCcEEEEEeE
Confidence            999999999999999999999996

>KOG0293|consensus

Probab=100.00  E-value=3e-33  Score=243.25  Aligned_cols=250  Identities=26%  Similarity=0.465  Sum_probs=211.8

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      +.++.||..+|..+.|+||.++|++|+.|..+++||+.+|.....+. +|...+.+++|.|||..+++|+.|++|..||+
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl  341 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL  341 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence            55788999999999999999999999999999999999998766654 45688999999999999999999999999998


Q ss_pred             CCCeEEEEEecCC-cceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeE
Q psy226          178 STYQCLKTMQGHD-HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTA  256 (406)
Q Consensus       178 ~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v  256 (406)
                      .. ..+...++-. ..|.+++..+||+++++...|..|++++..+..+...+.. ..+|++++++.+|+++++.-.+..+
T Consensus       342 Dg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise-~~~its~~iS~d~k~~LvnL~~qei  419 (519)
T KOG0293|consen  342 DG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE-EQPITSFSISKDGKLALVNLQDQEI  419 (519)
T ss_pred             Cc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc-cCceeEEEEcCCCcEEEEEcccCee
Confidence            64 3344454443 4689999999999999999999999999987665544443 4679999999999999999999999


Q ss_pred             EEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcC
Q psy226          257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNW  336 (406)
Q Consensus       257 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~  336 (406)
                      ++||+.....+..+.||...-.-+.-.-               +..+..++++||.|+.|+||+..+|+++..+.||...
T Consensus       420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCF---------------gg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~  484 (519)
T KOG0293|consen  420 HLWDLEENKLVRKYFGHKQGHFIIRSCF---------------GGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT  484 (519)
T ss_pred             EEeecchhhHHHHhhcccccceEEEecc---------------CCCCcceEEecCCCceEEEEEccCCceeEeecCCcce
Confidence            9999997777778888875433222111               1224579999999999999999999999999999999


Q ss_pred             EEEEEEcCCC-CEEEEEeCCCeEEEEeCCC
Q psy226          337 VRGVTFHPGG-KYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       337 v~~l~~s~~g-~~l~sgs~d~~i~vwd~~~  365 (406)
                      |++|+|+|.. .++||+|+||+||||-...
T Consensus       485 vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  485 VNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             eeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            9999999965 5789999999999997653

>KOG0308|consensus

Probab=100.00  E-value=3.4e-33  Score=255.48  Aligned_cols=272  Identities=28%  Similarity=0.458  Sum_probs=234.2

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCc------EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEe
Q psy226          116 PVFSLMASCSEDATIRLWDYETGE------YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY--QCLKTMQ  187 (406)
Q Consensus       116 p~~~~latgs~dg~v~vwd~~~~~------~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~--~~~~~~~  187 (406)
                      |.+++|+|||.||.|++|+...-.      +...++.|.+.|+++....+|+.|+++|.|-+|++|+....  -|+.++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            456789999999999999875422      45678889999999999999999999999999999999866  5788899


Q ss_pred             cCCcceEEEEE-ecCCCEEEEEeCCCcEEEEEcCCCeE--E--------EEee-cCCccEEEEEECCCCCEEEEEeCCCe
Q psy226          188 GHDHNVTGVAF-LPNSDFVLSASRDKTIKMWEVATGYC--V--------KTLT-GHREWVRQIKVSPDGTLLASCSNDHT  255 (406)
Q Consensus       188 ~h~~~v~~~~~-~p~~~~l~s~s~d~~i~iwd~~~~~~--~--------~~~~-~~~~~v~~l~~~~~~~~l~s~~~d~~  255 (406)
                      .|.+.|.|+++ -++..++++|+.|+.|.+||+.++..  +        ..+. |+...|.+++.++.|..|++|+..+.
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~  194 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD  194 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence            99999999999 77888999999999999999998732  2        2233 78899999999999999999999999


Q ss_pred             EEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc
Q psy226          256 ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN  335 (406)
Q Consensus       256 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~  335 (406)
                      +++||.++...+..+++|+..|..+..++                  +|..+++++.||+|++||+...+|+.++..|..
T Consensus       195 lr~wDprt~~kimkLrGHTdNVr~ll~~d------------------DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e  256 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKLRGHTDNVRVLLVND------------------DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE  256 (735)
T ss_pred             eEEeccccccceeeeeccccceEEEEEcC------------------CCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence            99999999999999999999999999876                  578899999999999999999999999999999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .|.++..+|+-..+++|+.||.|..=|+.+.....-+-....+|..+..+....-+-+++.|+.|+-|-.
T Consensus       257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCC
Confidence            9999999999999999999999999999885433223223446777777655554566788898988854

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=6.8e-31  Score=251.19  Aligned_cols=251  Identities=17%  Similarity=0.248  Sum_probs=198.6

Q ss_pred             EEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCC-CCEEEEEeCCCcEEEEeCCCCe--------EEEEEecCCcce
Q psy226          123 SCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQS-GKLLVSCSADMSLKLWDMSTYQ--------CLKTMQGHDHNV  193 (406)
Q Consensus       123 tgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~vwd~~~~~--------~~~~~~~h~~~v  193 (406)
                      +|+.++.|++|+.........+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+.++.        .+..+.+|...|
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            4778899999998887778889999999999999997 7899999999999999997532        345678999999


Q ss_pred             EEEEEecCCCE-EEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEec
Q psy226          194 TGVAFLPNSDF-VLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRG  272 (406)
Q Consensus       194 ~~~~~~p~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~  272 (406)
                      .+++|+|++.. |++++.|++|++||++++..+..+. |...|.+++|+|+|.+|++++.|+.|++||++++..+..+.+
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g  207 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI  207 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            99999999875 5789999999999999998777775 567899999999999999999999999999999998888999


Q ss_pred             CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC----cEEEEECCC-CeEEEEEe--CCCcCEEEEEEcCC
Q psy226          273 HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK----TIKLWDVGS-GSLLFTLI--GHDNWVRGVTFHPG  345 (406)
Q Consensus       273 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~lwd~~~-~~~~~~~~--~h~~~v~~l~~s~~  345 (406)
                      |...+.+..+....             ...++.++++++.|+    +|+|||+++ ++++..+.  .+.+.+......++
T Consensus       208 H~g~~~s~~v~~~~-------------fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~t  274 (568)
T PTZ00420        208 HDGGKNTKNIWIDG-------------LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDEST  274 (568)
T ss_pred             ccCCceeEEEEeee-------------EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCC
Confidence            98765443322100             001456788877664    799999985 55555443  23344444444567


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCccceeecc--ccceEEEEEEeCCC
Q psy226          346 GKYLVSCGDDKTLRVWDTANKRNMKTLEA--HSHFVTSLDFHRAH  388 (406)
Q Consensus       346 g~~l~sgs~d~~i~vwd~~~~~~~~~l~~--h~~~v~~l~~~~~~  388 (406)
                      |.++++|+.|+.|++|++..+. +..+..  +..++.+++|.|..
T Consensus       275 g~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        275 GLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence            8999999999999999997663 333322  45678889999975

>KOG0647|consensus

Probab=100.00  E-value=2.1e-31  Score=223.37  Aligned_cols=268  Identities=25%  Similarity=0.402  Sum_probs=217.3

Q ss_pred             CCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC-CcEE-EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q psy226          105 HRSPVIKVIFHP-VFSLMASCSEDATIRLWDYET-GEYE-RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       105 h~~~V~~v~~~p-~~~~latgs~dg~v~vwd~~~-~~~~-~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~  181 (406)
                      ..+.|.+++||| ...+++.||+||+||+|+++. |.+. +....|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            356799999999 567788999999999999987 4433 4566799999999999999999999999999999999986


Q ss_pred             EEEEEecCCcceEEEEEecCCC--EEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Q psy226          182 CLKTMQGHDHNVTGVAFLPNSD--FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW  259 (406)
Q Consensus       182 ~~~~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vw  259 (406)
                       ...+..|+.+|..+.|.+...  .|++||.|++|+.||.+....+.++.-. +.+.++..  ...+++.+..++.|.+|
T Consensus       106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv--~~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV--LYPMAVVATAERHIAVY  181 (347)
T ss_pred             -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc--cCceeEEEecCCcEEEE
Confidence             456778999999999998766  8999999999999999988888777533 44544433  34578888899999999


Q ss_pred             eCCCcccee--EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC--eEEEEEeCCCc
Q psy226          260 SLATKETKA--ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG--SLLFTLIGHDN  335 (406)
Q Consensus       260 d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~--~~~~~~~~h~~  335 (406)
                      +++.+....  ........++|++..++                  ..-.+.|+-+|.+-+..+..+  +.-++|+.|..
T Consensus       182 nL~n~~te~k~~~SpLk~Q~R~va~f~d------------------~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~  243 (347)
T KOG0647|consen  182 NLENPPTEFKRIESPLKWQTRCVACFQD------------------KDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS  243 (347)
T ss_pred             EcCCCcchhhhhcCcccceeeEEEEEec------------------CCceEeeeecceEEEEecCCCCccCceeEEEecc
Confidence            997653321  11122345677776653                  223488999999999988766  55567777753


Q ss_pred             ---------CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEe
Q psy226          336 ---------WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG  394 (406)
Q Consensus       336 ---------~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sg  394 (406)
                               .|.+|+|+|.-..|+++|.||++.+||-.....+++.+.|..+|++.+|+.+|.++|-+
T Consensus       244 ~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  244 TNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence                     47889999998999999999999999998888888889999999999999999998743

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=7.3e-31  Score=249.81  Aligned_cols=242  Identities=19%  Similarity=0.358  Sum_probs=198.9

Q ss_pred             cccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEE-------------EEEecCCcceEEEEEec-CCCEEEEEeCCC
Q psy226          147 HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCL-------------KTMQGHDHNVTGVAFLP-NSDFVLSASRDK  212 (406)
Q Consensus       147 h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~-------------~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~  212 (406)
                      |...|+....++++..+++++.+..+..|+...+..+             ..+.+|...|.+++|+| ++++|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            3445666666777777788888888888876443222             24678999999999999 788999999999


Q ss_pred             cEEEEEcCCC-------eEEEEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCC
Q psy226          213 TIKMWEVATG-------YCVKTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAP  284 (406)
Q Consensus       213 ~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  284 (406)
                      +|++||+.++       ..+..+.+|...|.+++|+|++ ++|++|+.|++|++||+.++.....+.+|...|.+++|+|
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp  178 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL  178 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence            9999999765       3467789999999999999985 6999999999999999999888888999999999999998


Q ss_pred             CCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcC-EEEEEEcCCCCEEEEEe----CCCeEE
Q psy226          285 GVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNW-VRGVTFHPGGKYLVSCG----DDKTLR  359 (406)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~-v~~l~~s~~g~~l~sgs----~d~~i~  359 (406)
                                        ++.+|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++    .|+.|+
T Consensus       179 ------------------dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk  240 (493)
T PTZ00421        179 ------------------DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIM  240 (493)
T ss_pred             ------------------CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence                              4778999999999999999999999999999764 45778999888887654    479999


Q ss_pred             EEeCCCCc-cceeeccc-cceEEEEEEeCCCCEEEEee-CCCeEEEeecC
Q psy226          360 VWDTANKR-NMKTLEAH-SHFVTSLDFHRAHPYVVTGS-VDKTVKVWECR  406 (406)
Q Consensus       360 vwd~~~~~-~~~~l~~h-~~~v~~l~~~~~~~~l~sgs-~Dg~v~iw~~~  406 (406)
                      +||+++.. .+.....+ ...+....|++++.+|++|+ .||.|++||++
T Consensus       241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence            99998654 34433333 33466677999999998887 59999999973

>KOG0283|consensus

Probab=100.00  E-value=1.8e-31  Score=251.71  Aligned_cols=244  Identities=22%  Similarity=0.447  Sum_probs=202.1

Q ss_pred             EEEec-ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC--------------------------------C-------
Q psy226          141 ERALH-GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST--------------------------------Y-------  180 (406)
Q Consensus       141 ~~~~~-~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~--------------------------------~-------  180 (406)
                      .+.+. .|.+.|.++.|++||++||+|+.|+.|+||.+..                                .       
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            34455 8999999999999999999999999999997633                                0       


Q ss_pred             ---------------------eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEE
Q psy226          181 ---------------------QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK  239 (406)
Q Consensus       181 ---------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~  239 (406)
                                           ++++.+.||.+.|..+.|+. .++|+++|.|.|||+|++....|++.|. |.++|+|++
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence                                 12334578999999999995 4689999999999999999999999985 999999999


Q ss_pred             ECC-CCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEE
Q psy226          240 VSP-DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL  318 (406)
Q Consensus       240 ~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~l  318 (406)
                      |+| |.++|++|+.|+.||||++...+...-. .-..-|++++|.|                  +|.+.+.|+.+|.+++
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~P------------------dGk~avIGt~~G~C~f  477 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSP------------------DGKGAVIGTFNGYCRF  477 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEecc------------------CCceEEEEEeccEEEE
Confidence            999 7899999999999999999766544332 2336789999998                  4889999999999999


Q ss_pred             EECCCCeEEEEEe--CC------CcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCccceeeccccce--EEEEEEeCC
Q psy226          319 WDVGSGSLLFTLI--GH------DNWVRGVTFHPGG-KYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF--VTSLDFHRA  387 (406)
Q Consensus       319 wd~~~~~~~~~~~--~h------~~~v~~l~~s~~g-~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~--v~~l~~~~~  387 (406)
                      |++...+....+.  .|      ...|+++.|.|.. ..|++.+.|..|||+|.++...+..|+++...  -....|+.|
T Consensus       478 Y~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~D  557 (712)
T KOG0283|consen  478 YDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSD  557 (712)
T ss_pred             EEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccC
Confidence            9998776654331  11      1279999999854 35777889999999999888888888765332  345679999


Q ss_pred             CCEEEEeeCCCeEEEeec
Q psy226          388 HPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       388 ~~~l~sgs~Dg~v~iw~~  405 (406)
                      |++|++|+.|..|.+|++
T Consensus       558 gk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  558 GKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             CCEEEEeecCceEEEEeC
Confidence            999999999999999986

>KOG0973|consensus

Probab=100.00  E-value=4.1e-31  Score=255.32  Aligned_cols=263  Identities=27%  Similarity=0.431  Sum_probs=220.0

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------C-----------cEEEEecccccCeeeEEECCC
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYET-------G-----------EYERALHGHLDSVQDIAFDQS  159 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~-------~-----------~~~~~~~~h~~~V~~l~~~~~  159 (406)
                      ....+..|.+.|+|+.|+|+|.+||+||+|+.|.||+...       |           +....+.+|...|.+++|+|+
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~  140 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD  140 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence            3456778999999999999999999999999999999772       1           135678899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCC------c
Q psy226          160 GKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR------E  233 (406)
Q Consensus       160 g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~------~  233 (406)
                      +.+|+++|.|++|.+||..++++++.+.+|...|-++.|.|-|+|+++-+.|++|++|++.+-.+.+.+.++-      .
T Consensus       141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T  220 (942)
T KOG0973|consen  141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT  220 (942)
T ss_pred             ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999987766777776543      3


Q ss_pred             cEEEEEECCCCCEEEEEe----CCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCC----C
Q psy226          234 WVRQIKVSPDGTLLASCS----NDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGG----P  305 (406)
Q Consensus       234 ~v~~l~~~~~~~~l~s~~----~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  305 (406)
                      ....+.|+|||.+|++..    .-.++.|.+-.+.+.-..+.+|..+++++.|+|........     .......    .
T Consensus       221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~-----ng~~~~~~~~y~  295 (942)
T KOG0973|consen  221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK-----NGTSTQPNCYYC  295 (942)
T ss_pred             eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc-----cCCccCCCcceE
Confidence            578899999999999864    23467788877777778899999999999999964322111     0000011    2


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEeC-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy226          306 YLATGSRDKTIKLWDVGSGSLLFTLIG-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       306 ~l~s~~~d~~i~lwd~~~~~~~~~~~~-h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~  365 (406)
                      .+|+|+.|++|-||.....+++..... ....|..++|+|||..|+.+|.||+|.++.+..
T Consensus       296 i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  296 IAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             EEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            689999999999999988777655433 245799999999999999999999999998764

>KOG1446|consensus

Probab=100.00  E-value=7.4e-30  Score=215.80  Aligned_cols=246  Identities=24%  Similarity=0.382  Sum_probs=209.9

Q ss_pred             EEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeC--CCcEEEEE
Q psy226          141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR--DKTIKMWE  218 (406)
Q Consensus       141 ~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~i~iwd  218 (406)
                      .+.+..-.+.|+++.|+++|.+|++++.|.++++||..++++++++..+...+..++|....+.++.++.  |.+||..+
T Consensus         7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen    7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence            3444545678999999999999999999999999999999999999988889999999888888887777  89999999


Q ss_pred             cCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCC
Q psy226          219 VATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       219 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                      +.+.+.++.|.||...|+.++.+|-+..|++++.|++||+||++..++...+.....+  ..+|.|              
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp--------------  150 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDP--------------  150 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECC--------------
Confidence            9999999999999999999999999999999999999999999987776655433333  356666              


Q ss_pred             CCCCCCCEEEEEeCCCcEEEEECCCC--eEEEEEe---CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec
Q psy226          299 PGQGGGPYLATGSRDKTIKLWDVGSG--SLLFTLI---GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE  373 (406)
Q Consensus       299 ~~~~~~~~l~s~~~d~~i~lwd~~~~--~~~~~~~---~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~  373 (406)
                          .|.++|++...+.|++||++.-  .+-.++.   +-....+.+.|||+|++|+.+...+.+++.|.-+|..+.++.
T Consensus       151 ----~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs  226 (311)
T KOG1446|consen  151 ----EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS  226 (311)
T ss_pred             ----CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe
Confidence                5889999998889999999863  2222332   335568999999999999999999999999999999888887


Q ss_pred             cccce---EEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          374 AHSHF---VTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       374 ~h~~~---v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      .+...   -....|.|+++++++|+.||+|.+|+++
T Consensus       227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence            66443   2567899999999999999999999863

>KOG0305|consensus

Probab=100.00  E-value=4.6e-31  Score=242.85  Aligned_cols=242  Identities=26%  Similarity=0.436  Sum_probs=214.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc-cccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEE
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHG-HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCL  183 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~  183 (406)
                      +...|+++.|+++|.+||+|..+|.|.|||..+.+....+.+ |...|-+++|+  +..+.+|+.|+.|..+|+...+..
T Consensus       216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~  293 (484)
T KOG0305|consen  216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV  293 (484)
T ss_pred             CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence            478999999999999999999999999999999888888888 99999999998  678999999999999999876554


Q ss_pred             EE-EecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC-CCCEEEEEe--CCCeEEEE
Q psy226          184 KT-MQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLASCS--NDHTARVW  259 (406)
Q Consensus       184 ~~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~--~d~~v~vw  259 (406)
                      -. +.+|...|..++|++++.++++|+.|+.+.|||.........+..|...|..++|+| ...+||+|+  .|++|++|
T Consensus       294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw  373 (484)
T KOG0305|consen  294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW  373 (484)
T ss_pred             hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence            44 889999999999999999999999999999999988888999999999999999999 567888865  69999999


Q ss_pred             eCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEE-EEeCCCcEEEEECCCCeEEEEEeCCCcCEE
Q psy226          260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLA-TGSRDKTIKLWDVGSGSLLFTLIGHDNWVR  338 (406)
Q Consensus       260 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~  338 (406)
                      |..++..+..+. ....|.++.|++..                 ..++. -|..++.|.||+..+.+.+..+.+|...|.
T Consensus       374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~-----------------kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl  435 (484)
T KOG0305|consen  374 NTNTGARIDSVD-TGSQVCSLIWSKKY-----------------KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVL  435 (484)
T ss_pred             EcCCCcEecccc-cCCceeeEEEcCCC-----------------CEEEEecCCCCCcEEEEeccccceeeeecCCcceeE
Confidence            999887766543 34679999999842                 22232 255678999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy226          339 GVTFHPGGKYLVSCGDDKTLRVWDTANK  366 (406)
Q Consensus       339 ~l~~s~~g~~l~sgs~d~~i~vwd~~~~  366 (406)
                      .++++|||..+++|+.|.++++|++-..
T Consensus       436 ~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  436 YLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EEEECCCCCEEEEecccCcEEeccccCC
Confidence            9999999999999999999999998764

>KOG0278|consensus

Probab=100.00  E-value=5.6e-32  Score=221.07  Aligned_cols=247  Identities=24%  Similarity=0.434  Sum_probs=213.9

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      ++.||.+.|....++.+-..-|+++.|=+.+|||.-+|..+..+. |..-|.+++|+.|.++|++|+.+..+||||++..
T Consensus        54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p  132 (334)
T KOG0278|consen   54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP  132 (334)
T ss_pred             eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCC
Confidence            688999999999999999999999999999999999998777665 8889999999999999999999999999999864


Q ss_pred             e-EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Q psy226          181 Q-CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW  259 (406)
Q Consensus       181 ~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vw  259 (406)
                      + ....+.+|...|..+-|....+.+++.+.|++||+||.+++..++++. -+..|+++.++++|.++.++ ..+.|.+|
T Consensus       133 ~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fw  210 (334)
T KOG0278|consen  133 KAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFW  210 (334)
T ss_pred             CCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEe
Confidence            3 456788999999999999988999999999999999999999999886 34668999999999876554 67789999


Q ss_pred             eCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE-eCCCcCEE
Q psy226          260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL-IGHDNWVR  338 (406)
Q Consensus       260 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~-~~h~~~v~  338 (406)
                      |..+...+..... ...|.+....|.                  ..++++|+.|..++.||..+|..+-.+ ++|.++|.
T Consensus       211 daksf~~lKs~k~-P~nV~SASL~P~------------------k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh  271 (334)
T KOG0278|consen  211 DAKSFGLLKSYKM-PCNVESASLHPK------------------KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH  271 (334)
T ss_pred             ccccccceeeccC-ccccccccccCC------------------CceEEecCcceEEEEEeccCCceeeecccCCCCceE
Confidence            9988766554432 234555555553                  467999999999999999999988875 89999999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCccc
Q psy226          339 GVTFHPGGKYLVSCGDDKTLRVWDTANKRNM  369 (406)
Q Consensus       339 ~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~  369 (406)
                      ||.|+|+|...++||.||+|++|.+..++..
T Consensus       272 cVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  272 CVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             EEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            9999999999999999999999988665543

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.2e-29  Score=242.71  Aligned_cols=221  Identities=18%  Similarity=0.286  Sum_probs=182.8

Q ss_pred             EeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecC-CCEEEEEeCCCcEEEEEcCCCe--------EEEEeecCCccEE
Q psy226          166 CSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVATGY--------CVKTLTGHREWVR  236 (406)
Q Consensus       166 gs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~iwd~~~~~--------~~~~~~~~~~~v~  236 (406)
                      |+.++.|++|+......+..+.+|...|.+++|+|+ +++|++|+.|++|++||+.++.        .+..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            667889999998887788899999999999999997 7899999999999999997642        3446789999999


Q ss_pred             EEEECCCCCE-EEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCc
Q psy226          237 QIKVSPDGTL-LASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT  315 (406)
Q Consensus       237 ~l~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  315 (406)
                      +++|+|++.. +++++.|++|++||++++.....+. |...|.+++|+|                  +|.+|++++.|+.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp------------------dG~lLat~s~D~~  190 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI------------------KGNLLSGTCVGKH  190 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC------------------CCCEEEEEecCCE
Confidence            9999999875 5789999999999999887766664 567899999998                  4778999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCcCEEE-----EEEcCCCCEEEEEeCCC----eEEEEeCCC-Cccceeec--cccceEEEEE
Q psy226          316 IKLWDVGSGSLLFTLIGHDNWVRG-----VTFHPGGKYLVSCGDDK----TLRVWDTAN-KRNMKTLE--AHSHFVTSLD  383 (406)
Q Consensus       316 i~lwd~~~~~~~~~~~~h~~~v~~-----l~~s~~g~~l~sgs~d~----~i~vwd~~~-~~~~~~l~--~h~~~v~~l~  383 (406)
                      |+|||++++..+.++.+|.+.+..     ..|++++.+|+++|.|+    +|+|||+++ .+.+..+.  .+.+.+...-
T Consensus       191 IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~  270 (568)
T PTZ00420        191 MHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHY  270 (568)
T ss_pred             EEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEee
Confidence            999999999999999999876433     34568999999988774    799999985 45555543  2333333343


Q ss_pred             EeCCCCEEEEeeCCCeEEEeec
Q psy226          384 FHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       384 ~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ..+++.++++|+.|++|++|++
T Consensus       271 D~~tg~l~lsGkGD~tIr~~e~  292 (568)
T PTZ00420        271 DESTGLIYLIGKGDGNCRYYQH  292 (568)
T ss_pred             eCCCCCEEEEEECCCeEEEEEc
Confidence            4556889999999999999996

>KOG1407|consensus

Probab=99.98  E-value=7.6e-31  Score=215.74  Aligned_cols=241  Identities=22%  Similarity=0.402  Sum_probs=205.8

Q ss_pred             EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE--EEecCCcceEEEEEecC-CCEEEEEeCCCcEEEEE
Q psy226          142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK--TMQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWE  218 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~iwd  218 (406)
                      +.+.+|...|.+|+|+.+|..|++|+.|+++++|++.......  ..++|.+.|-.++|+|. .+.+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4567899999999999999999999999999999998664433  34689999999999985 46899999999999999


Q ss_pred             cCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCC
Q psy226          219 VATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       219 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                      +++++++.......+.+ -+.|+|+|++++.++.|..|...|.++.+.....+. ...+.-+.|..              
T Consensus        94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~--------------  157 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNN--------------  157 (313)
T ss_pred             eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecC--------------
Confidence            99999998877655544 478999999999999999999999988766554332 23344556653              


Q ss_pred             CCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccce
Q psy226          299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF  378 (406)
Q Consensus       299 ~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~  378 (406)
                          .+.+++.....|+|.|.....-+++..+..|.....|+.|+|+|+|+|+||.|..+.+||+...-+++.+.-+.-+
T Consensus       158 ----~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp  233 (313)
T KOG1407|consen  158 ----SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP  233 (313)
T ss_pred             ----CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc
Confidence                2445555566799999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             EEEEEEeCCCCEEEEeeCCCeEEE
Q psy226          379 VTSLDFHRAHPYVVTGSVDKTVKV  402 (406)
Q Consensus       379 v~~l~~~~~~~~l~sgs~Dg~v~i  402 (406)
                      |+.|.|+.+|++||+||.|..|-|
T Consensus       234 VRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  234 VRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             eEEEEeccCcceeeccCccceEEe
Confidence            999999999999999999987743

>KOG0294|consensus

Probab=99.98  E-value=5.9e-30  Score=215.83  Aligned_cols=240  Identities=26%  Similarity=0.467  Sum_probs=203.4

Q ss_pred             EecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCC--EEEEEeCCCcEEEEEcC
Q psy226          143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSD--FVLSASRDKTIKMWEVA  220 (406)
Q Consensus       143 ~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~i~iwd~~  220 (406)
                      .+..|.++|++|+.+  |.++++||.|-+|+|||+.+...+..+..|.+.|+++.|.+.-.  .|++|+.||.|.+|+..
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            456899999999994  78999999999999999999888889999999999999998764  89999999999999999


Q ss_pred             CCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCC
Q psy226          221 TGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPG  300 (406)
Q Consensus       221 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  300 (406)
                      .-.++.++++|...|+.++++|.|++-++.+.|+.+++||+-.++....+.- ......+.|.|                
T Consensus       116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~----------------  178 (362)
T KOG0294|consen  116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSP----------------  178 (362)
T ss_pred             CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcC----------------
Confidence            9999999999999999999999999999999999999999988765444332 22233488887                


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEE
Q psy226          301 QGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVT  380 (406)
Q Consensus       301 ~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~  380 (406)
                        .|.+++.+..++ |-+|.+.+......+. .+..+.++.|- ++.+|++|++|+.|++||.++..+...+.+|...|-
T Consensus       179 --~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK  253 (362)
T KOG0294|consen  179 --QGDHFVVSGRNK-IDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVK  253 (362)
T ss_pred             --CCCEEEEEeccE-EEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhhee
Confidence              467777777665 8899887755443332 22446666664 577899999999999999999899999999999999


Q ss_pred             EEEE--eCCCCEEEEeeCCCeEEEeecC
Q psy226          381 SLDF--HRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       381 ~l~~--~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ++.+  +|++.||+|+|.||.|++||.+
T Consensus       254 ~i~~~~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  254 DIASYTNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             eeEEEecCCceEEEEeccCceEEEEEcc
Confidence            9884  5678899999999999999964

>KOG1332|consensus

Probab=99.98  E-value=4.5e-31  Score=215.12  Aligned_cols=257  Identities=27%  Similarity=0.457  Sum_probs=207.9

Q ss_pred             ecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEecCCcceEEEEEec--CCCEEEEEeCCCcEEEEE
Q psy226          144 LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY---QCLKTMQGHDHNVTGVAFLP--NSDFVLSASRDKTIKMWE  218 (406)
Q Consensus       144 ~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~iwd  218 (406)
                      ...|.+.|.++..+-.|++|+||+.|++|||+.+.+.   +.+.+|.||.++|..++|..  .|.+|++++.||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            4579999999988889999999999999999998753   56789999999999999975  789999999999999999


Q ss_pred             cCCCeE--EEEeecCCccEEEEEECCC--CCEEEEEeCCCeEEEEeCCCc---cceeEEecCCceEEEEEeCCCCCcccc
Q psy226          219 VATGYC--VKTLTGHREWVRQIKVSPD--GTLLASCSNDHTARVWSLATK---ETKAELRGHDHTVECVAWAPGVASESI  291 (406)
Q Consensus       219 ~~~~~~--~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~  291 (406)
                      -.+|.-  ......|...|++++|.|.  |-.|++++.||.|.|.+.+..   ........|...|.++.|.|.......
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            888742  3445689999999999996  568899999999999998764   223456689999999999997543221


Q ss_pred             ccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe--EEEEEeCCCcCEEEEEEcCCC----CEEEEEeCCCeEEEEeCCC
Q psy226          292 SEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS--LLFTLIGHDNWVRGVTFHPGG----KYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       292 ~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~--~~~~~~~h~~~v~~l~~s~~g----~~l~sgs~d~~i~vwd~~~  365 (406)
                      ...   . ....-+.|++|+.|+.|+||+..+++  ...++.+|.++|+.++|.|.-    .+|+|||.||++.||....
T Consensus       167 ~~~---~-~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  167 VDQ---G-PAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             ccc---C-cccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence            110   0 01123569999999999999988763  344689999999999999963    5799999999999997652


Q ss_pred             C--c-cceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          366 K--R-NMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       366 ~--~-~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      .  . ....++.....+..+.|+..|++|+.++.|..|.+|.
T Consensus       243 e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  243 EYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             ccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            1  1 2223344556799999999999999999999999996

>KOG2096|consensus

Probab=99.98  E-value=7.7e-30  Score=215.39  Aligned_cols=284  Identities=23%  Similarity=0.377  Sum_probs=217.0

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE--EEe--cccccCeeeEEECCCCCEEE-EEeCCCcEEE
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE--RAL--HGHLDSVQDIAFDQSGKLLV-SCSADMSLKL  174 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~--~~~--~~h~~~V~~l~~~~~g~~l~-sgs~d~~i~v  174 (406)
                      ..|+||.+.|++++|+++|..|||++.|++|++|++.+-...  +.+  .-..+..+.+.|.||-+-++ ++-...++++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            368999999999999999999999999999999998763211  111  11223567899999976554 4445568999


Q ss_pred             EeCCC---CeE---------EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC
Q psy226          175 WDMST---YQC---------LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP  242 (406)
Q Consensus       175 wd~~~---~~~---------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  242 (406)
                      |.+..   |..         +..-+.|.-.+..+-.-.++.+|++++.|..|.+|+++ |+.+.++......-...+.+|
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            97642   111         11112355566666666677899999999999999998 888888887777777889999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCc--------cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC
Q psy226          243 DGTLLASCSNDHTARVWSLATK--------ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK  314 (406)
Q Consensus       243 ~~~~l~s~~~d~~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  314 (406)
                      +|+++++++.-..|++|.+--.        .....+++|...|...+|+|+                  ...+++.+.||
T Consensus       239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~------------------S~r~vtvSkDG  300 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS------------------STRAVTVSKDG  300 (420)
T ss_pred             CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC------------------cceeEEEecCC
Confidence            9999999999999999986321        235678999999999999984                  56799999999


Q ss_pred             cEEEEECCC-------CeEEEEE----eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee-ccccceEEEE
Q psy226          315 TIKLWDVGS-------GSLLFTL----IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL-EAHSHFVTSL  382 (406)
Q Consensus       315 ~i~lwd~~~-------~~~~~~~----~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l-~~h~~~v~~l  382 (406)
                      .+||||+.-       .+.+.+.    ....+....+.++|+|+.|+... ...++++..++++...++ ..|...|.++
T Consensus       301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~i  379 (420)
T KOG2096|consen  301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSI  379 (420)
T ss_pred             cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeE
Confidence            999999741       2222222    11223344899999999887544 567999999999887777 4699999999


Q ss_pred             EEeCCCCEEEEeeCCCeEEEee
Q psy226          383 DFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       383 ~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      +|+++|+++||+| |..++++.
T Consensus       380 s~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  380 SYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             EecCCCcEEeeec-ceeeeeec
Confidence            9999999999997 77777753

>KOG1036|consensus

Probab=99.98  E-value=1.9e-29  Score=212.36  Aligned_cols=266  Identities=22%  Similarity=0.330  Sum_probs=216.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKT  185 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~  185 (406)
                      .+.|..|.|+|.+..|+.+++||++++||....++...++ |..++.+++|.+ ...+++|+.||.|+.+|+.+++. ..
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~   89 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQ   89 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-ee
Confidence            4679999999999999999999999999998876555444 889999999987 46788999999999999998764 35


Q ss_pred             EecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCcc
Q psy226          186 MQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKE  265 (406)
Q Consensus       186 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~  265 (406)
                      +..|..+|.|+.+.+..+.+++||.|++|++||.+.......+... ..|.++..  .|+.|+.|+.|..+.+||+++..
T Consensus        90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence            5679999999999998899999999999999999875555444332 36766655  57789999999999999998765


Q ss_pred             ceeEE--ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC----eEEEEEeCCCc----
Q psy226          266 TKAEL--RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG----SLLFTLIGHDN----  335 (406)
Q Consensus       266 ~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~----~~~~~~~~h~~----  335 (406)
                      .....  ....-.+.|++..|.                  +.=.++++-||.|.+=.+...    +.-+.|+.|..    
T Consensus       167 ~~~q~reS~lkyqtR~v~~~pn------------------~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~  228 (323)
T KOG1036|consen  167 EPFQRRESSLKYQTRCVALVPN------------------GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD  228 (323)
T ss_pred             chhhhccccceeEEEEEEEecC------------------CCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC
Confidence            43321  223456788888873                  223678889998877554433    34456777743    


Q ss_pred             -----CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEee
Q psy226          336 -----WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGS  395 (406)
Q Consensus       336 -----~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs  395 (406)
                           +|.+++|+|--..|+||+.||.|.+||..+.+.++.+......|.+++|+.+|..||.++
T Consensus       229 ~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  229 TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             ceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence                 689999999999999999999999999999999998877777799999999999999886

>KOG0308|consensus

Probab=99.97  E-value=3.1e-31  Score=242.72  Aligned_cols=234  Identities=24%  Similarity=0.468  Sum_probs=206.9

Q ss_pred             EEEC-CCCCEEEEEeCCCcEEEEeCCCC------eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC--eE
Q psy226          154 IAFD-QSGKLLVSCSADMSLKLWDMSTY------QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG--YC  224 (406)
Q Consensus       154 l~~~-~~g~~l~sgs~d~~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~--~~  224 (406)
                      +..+ |.+++|+||+.||.|++|++..-      .++..++.|.+.|..+....+++.|+++|.|-+|++|+...+  .|
T Consensus        30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c  109 (735)
T KOG0308|consen   30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC  109 (735)
T ss_pred             ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh
Confidence            3443 45678999999999999987531      246778889999999999889999999999999999999877  78


Q ss_pred             EEEeecCCccEEEEEE-CCCCCEEEEEeCCCeEEEEeCCCccc----------eeEEe-cCCceEEEEEeCCCCCccccc
Q psy226          225 VKTLTGHREWVRQIKV-SPDGTLLASCSNDHTARVWSLATKET----------KAELR-GHDHTVECVAWAPGVASESIS  292 (406)
Q Consensus       225 ~~~~~~~~~~v~~l~~-~~~~~~l~s~~~d~~v~vwd~~~~~~----------~~~~~-~~~~~v~~~~~~~~~~~~~~~  292 (406)
                      +.++..|.++|.|+++ .++..++|+||.|+.|.+||+.++..          ...+. ++..+|++++..+        
T Consensus       110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~--------  181 (735)
T KOG0308|consen  110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ--------  181 (735)
T ss_pred             HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC--------
Confidence            9999999999999999 88899999999999999999986622          12233 6777888888776        


Q ss_pred             cccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee
Q psy226          293 EAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL  372 (406)
Q Consensus       293 ~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l  372 (406)
                                .|..+++|+..+.|++||.++++.++.+.||...|+++..++||..++|+|+||+|++||+...+++.++
T Consensus       182 ----------t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  182 ----------TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY  251 (735)
T ss_pred             ----------cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence                      4668999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          373 EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       373 ~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ..|...|+++.-+|+=..+.+|+.||.|..=|+
T Consensus       252 ~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  252 IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL  284 (735)
T ss_pred             EeccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence            999999999999999999999999999876554

>KOG1408|consensus

Probab=99.97  E-value=3.2e-30  Score=238.17  Aligned_cols=284  Identities=24%  Similarity=0.374  Sum_probs=233.4

Q ss_pred             cCCCCeEEEEEcCC-----------CCEEEEEeCCCcEEEEEcCCCcEEEE----------------------e------
Q psy226          104 GHRSPVIKVIFHPV-----------FSLMASCSEDATIRLWDYETGEYERA----------------------L------  144 (406)
Q Consensus       104 ~h~~~V~~v~~~p~-----------~~~latgs~dg~v~vwd~~~~~~~~~----------------------~------  144 (406)
                      -|...|..|.--|-           ...+.|||.|++||+||+..+.....                      +      
T Consensus       367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~  446 (1080)
T KOG1408|consen  367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG  446 (1080)
T ss_pred             eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence            47777777776551           23689999999999999876311100                      0      


Q ss_pred             ---------cccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEec---CCCEEEEEeCCC
Q psy226          145 ---------HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP---NSDFVLSASRDK  212 (406)
Q Consensus       145 ---------~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~s~d~  212 (406)
                               -+..-.+.+++.+|+|++|++|..-|+++|+++.+.+....+..|+..|.|+.|+.   ..++|+++++|+
T Consensus       447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR  526 (1080)
T KOG1408|consen  447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDR  526 (1080)
T ss_pred             cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCc
Confidence                     01223589999999999999999999999999998888888999999999999984   246899999999


Q ss_pred             cEEEEEcCCC-eEEEEeecCCccEEEEEECCCC--CEEEEEeCCCeEEEEeCCCccceeEEecCC-----ceEEEEEeCC
Q psy226          213 TIKMWEVATG-YCVKTLTGHREWVRQIKVSPDG--TLLASCSNDHTARVWSLATKETKAELRGHD-----HTVECVAWAP  284 (406)
Q Consensus       213 ~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~  284 (406)
                      .|.++|+... ..++++.+|+..|+++.|.-.|  ..+++|+.|+.|.+--.........+..|.     ..++.++..|
T Consensus       527 lIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp  606 (1080)
T KOG1408|consen  527 LIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP  606 (1080)
T ss_pred             eEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC
Confidence            9999999765 4678899999999999998877  678999999887654333222222333332     3455565555


Q ss_pred             CCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC---CCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy226          285 GVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG---HDNWVRGVTFHPGGKYLVSCGDDKTLRVW  361 (406)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~---h~~~v~~l~~s~~g~~l~sgs~d~~i~vw  361 (406)
                                        ..+++++++.|+.|+|||+.+|+..+.|++   |++..--+...|.|-||++...|+++.++
T Consensus       607 ------------------~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~  668 (1080)
T KOG1408|consen  607 ------------------TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFV  668 (1080)
T ss_pred             ------------------CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEE
Confidence                              467899999999999999999999999986   56677788999999999999999999999


Q ss_pred             eCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          362 DTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       362 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |..+++++....+|+..|+.+.|.+|.+.|++.+.||.|.||.+
T Consensus       669 Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  669 DFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             EeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence            99999999999999999999999999999999999999999986

>KOG0639|consensus

Probab=99.97  E-value=9.3e-31  Score=232.94  Aligned_cols=282  Identities=22%  Similarity=0.366  Sum_probs=233.7

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---EEEEecc--cccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE---YERALHG--HLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~---~~~~~~~--h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      .-.|..-|.++.++...+++.||+. |-|+|||+....   .+..+..  ....|+++.+.|||+.|++|+.-.++.|||
T Consensus       415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            3358888999999999999999986 779999986532   2222222  345689999999999999999999999999


Q ss_pred             CCCCeE--EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          177 MSTYQC--LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       177 ~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      +.....  ...+....-...+++.+||.+..+++..||.|.|||+.+...++.|+||++.+.||.+++||..|.+|+.|.
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence            975432  223333335678899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD  334 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~  334 (406)
                      +||.||++.+..++.. .....|.++.++|                  .+.+++.|..++.+.|-.... ...+.+.-|+
T Consensus       574 tvRcWDlregrqlqqh-dF~SQIfSLg~cP------------------~~dWlavGMens~vevlh~sk-p~kyqlhlhe  633 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQH-DFSSQIFSLGYCP------------------TGDWLAVGMENSNVEVLHTSK-PEKYQLHLHE  633 (705)
T ss_pred             ceeehhhhhhhhhhhh-hhhhhheecccCC------------------CccceeeecccCcEEEEecCC-ccceeecccc
Confidence            9999999987654321 1234566777766                  578999999999998887643 4445677799


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +-|.++.|.+.|+++++.+.|..+..|.+.-+..+-..+. ...|.+++.+.+.+|++|||.|....+|.+
T Consensus       634 ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  634 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9999999999999999999999999999888877655543 457999999999999999999999988864

>KOG0264|consensus

Probab=99.97  E-value=9.1e-30  Score=224.55  Aligned_cols=243  Identities=24%  Similarity=0.459  Sum_probs=203.9

Q ss_pred             ccccCeeeEEECCCC-CEEEEEeCCCcEEEEeCCCCe----------EEEEEecCCcceEEEEEecCCC-EEEEEeCCCc
Q psy226          146 GHLDSVQDIAFDQSG-KLLVSCSADMSLKLWDMSTYQ----------CLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKT  213 (406)
Q Consensus       146 ~h~~~V~~l~~~~~g-~~l~sgs~d~~i~vwd~~~~~----------~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~  213 (406)
                      .|.+.|+.+.+-|.. ..+++++..+.|.|||..+..          .-..+.||...-.+++|++... .|++|+.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            488999999999876 466778888999999986421          1237889999888999998654 7999999999


Q ss_pred             EEEEEcCCCe-------EEEEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEeCC--CccceeEEecCCceEEEEEeC
Q psy226          214 IKMWEVATGY-------CVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLA--TKETKAELRGHDHTVECVAWA  283 (406)
Q Consensus       214 i~iwd~~~~~-------~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~--~~~~~~~~~~~~~~v~~~~~~  283 (406)
                      |++||+....       ....+.+|.+.|..++|++ +..+|++++.|+.+.|||++  +.++.....+|...+.|++|+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            9999996532       3456789999999999999 45789999999999999999  556667788999999999999


Q ss_pred             CCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC-eEEEEEeCCCcCEEEEEEcCCC-CEEEEEeCCCeEEEE
Q psy226          284 PGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG-SLLFTLIGHDNWVRGVTFHPGG-KYLVSCGDDKTLRVW  361 (406)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~-~~~~~~~~h~~~v~~l~~s~~g-~~l~sgs~d~~i~vw  361 (406)
                      |.                 ++.+||+|+.|++|++||+|+- ++++++.+|...|.+|.|||+- ..|+|++.|+.+.||
T Consensus       282 p~-----------------~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vW  344 (422)
T KOG0264|consen  282 PF-----------------NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVW  344 (422)
T ss_pred             CC-----------------CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEE
Confidence            95                 4678999999999999999974 5788999999999999999975 577899999999999


Q ss_pred             eCCCCccc--------------eeeccccceEEEEEEeCCCCE-EEEeeCCCeEEEeec
Q psy226          362 DTANKRNM--------------KTLEAHSHFVTSLDFHRAHPY-VVTGSVDKTVKVWEC  405 (406)
Q Consensus       362 d~~~~~~~--------------~~l~~h~~~v~~l~~~~~~~~-l~sgs~Dg~v~iw~~  405 (406)
                      |+..-...              -.=.+|...|..+.|+|..++ |+|.+.|+.+.||+.
T Consensus       345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence            98642111              122578889999999999986 578899999999985

>KOG0288|consensus

Probab=99.97  E-value=1.3e-30  Score=227.02  Aligned_cols=239  Identities=27%  Similarity=0.460  Sum_probs=210.0

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      +|.|-.++|+.+.|.+++.++++++.|+.+++|+....+...++.||++.|+++.|......+++|+.|.+|++||+...
T Consensus       214 tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~  293 (459)
T KOG0288|consen  214 TLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA  293 (459)
T ss_pred             hhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh
Confidence            56778899999999999999999999999999999999999999999999999999887777999999999999999988


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEe
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS  260 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd  260 (406)
                      .|.++... ...+..++.+  ...+++|-.|++|++||++++.+......+. .|+++..+++|..+.+++.|.++.++|
T Consensus       294 ~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viD  369 (459)
T KOG0288|consen  294 YCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVID  369 (459)
T ss_pred             heeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeee
Confidence            88776542 3345555554  4578899999999999999999999888776 899999999999999999999999999


Q ss_pred             CCCccceeEEecCC----ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc-
Q psy226          261 LATKETKAELRGHD----HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN-  335 (406)
Q Consensus       261 ~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~-  335 (406)
                      +++.+..+.+....    +....+.|+|                  ++.|+++|+.||.|+||++.++++...+..... 
T Consensus       370 lRt~eI~~~~sA~g~k~asDwtrvvfSp------------------d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~  431 (459)
T KOG0288|consen  370 LRTKEIRQTFSAEGFKCASDWTRVVFSP------------------DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN  431 (459)
T ss_pred             cccccEEEEeeccccccccccceeEECC------------------CCceeeeccCCCcEEEEEccCceEEEEeccCCCC
Confidence            99988777665422    3366777777                  578999999999999999999999988876443 


Q ss_pred             -CEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy226          336 -WVRGVTFHPGGKYLVSCGDDKTLRVW  361 (406)
Q Consensus       336 -~v~~l~~s~~g~~l~sgs~d~~i~vw  361 (406)
                       .|++++|+|.|..|++++.++.+.+|
T Consensus       432 ~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  432 AAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             cceEEEEEcCCCchhhcccCCcceEec
Confidence             59999999999999999999999999

>KOG0643|consensus

Probab=99.97  E-value=2.6e-29  Score=207.36  Aligned_cols=234  Identities=23%  Similarity=0.381  Sum_probs=209.0

Q ss_pred             EecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q psy226          143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG  222 (406)
Q Consensus       143 ~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~  222 (406)
                      .+.||..+++-+.++.+|.+|.+|+.|.++.||-..+|+.+.++.||.+.|+++...-+.+++++|+.|.++++||+++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46789999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             eEEEEeecCCccEEEEEECCCCCEEEEEeC-----CCeEEEEeCC-------CccceeEEecCCceEEEEEeCCCCCccc
Q psy226          223 YCVKTLTGHREWVRQIKVSPDGTLLASCSN-----DHTARVWSLA-------TKETKAELRGHDHTVECVAWAPGVASES  290 (406)
Q Consensus       223 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-----d~~v~vwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~  290 (406)
                      +++.+++. ..+|..+.|+++|++++.+..     .+.|.++|++       ..++...+..++..+..+.|.|      
T Consensus        85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~------  157 (327)
T KOG0643|consen   85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP------  157 (327)
T ss_pred             cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc------
Confidence            99988864 467999999999999887764     4679999998       4455677778888899999988      


Q ss_pred             cccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEE-EEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc
Q psy226          291 ISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLL-FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNM  369 (406)
Q Consensus       291 ~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~-~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~  369 (406)
                                  -+.++++|..||.|.+||+++|..+ .....|...|+.+.++|+..+++++|.|.+-++||..+...+
T Consensus       158 ------------l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~  225 (327)
T KOG0643|consen  158 ------------LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL  225 (327)
T ss_pred             ------------cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeE
Confidence                        4779999999999999999998654 445679999999999999999999999999999999999999


Q ss_pred             eeeccccceEEEEEEeCCCCEEEEeeC
Q psy226          370 KTLEAHSHFVTSLDFHRAHPYVVTGSV  396 (406)
Q Consensus       370 ~~l~~h~~~v~~l~~~~~~~~l~sgs~  396 (406)
                      +++... .+|++.+++|....++-|+.
T Consensus       226 Kty~te-~PvN~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  226 KTYTTE-RPVNTAAISPLLDHVILGGG  251 (327)
T ss_pred             EEeeec-ccccceecccccceEEecCC
Confidence            998754 58999999998887776653

>KOG0289|consensus

Probab=99.97  E-value=8e-30  Score=223.28  Aligned_cols=237  Identities=26%  Similarity=0.443  Sum_probs=213.5

Q ss_pred             cCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q psy226          149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL  228 (406)
Q Consensus       149 ~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~  228 (406)
                      ..+.++...+....+++|+.|.++.++|..+++.+.++.||...|+.+.|+|+...+++++.|..|++|......+....
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~  299 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS  299 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence            46788888888789999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEec--CCceEEEEEeCCCCCccccccccCCCCCCCCCCE
Q psy226          229 TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRG--HDHTVECVAWAPGVASESISEAAGRPPGQGGGPY  306 (406)
Q Consensus       229 ~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (406)
                      ..|..+|+.+..+|.|.||+++++|++..+.|++++..+.....  ..-.+.+.+|+|                  +|.+
T Consensus       300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp------------------DgLi  361 (506)
T KOG0289|consen  300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP------------------DGLI  361 (506)
T ss_pred             ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC------------------CceE
Confidence            99999999999999999999999999999999999877655443  234578889998                  5889


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc-cceEEEEEEe
Q psy226          307 LATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH-SHFVTSLDFH  385 (406)
Q Consensus       307 l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h-~~~v~~l~~~  385 (406)
                      |.+|..|+.|+|||+.++..+..|.+|.++|..++|+.+|.||+++++|+.|++||++..+.++++.-. ...|.++.|+
T Consensus       362 fgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD  441 (506)
T KOG0289|consen  362 FGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFD  441 (506)
T ss_pred             EeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEc
Confidence            999999999999999999999999999999999999999999999999999999999988888887543 2369999999


Q ss_pred             CCCCEEEEeeCCCeEEEe
Q psy226          386 RAHPYVVTGSVDKTVKVW  403 (406)
Q Consensus       386 ~~~~~l~sgs~Dg~v~iw  403 (406)
                      +.|.||+.+|.|=+|.++
T Consensus       442 ~SGt~L~~~g~~l~Vy~~  459 (506)
T KOG0289|consen  442 QSGTYLGIAGSDLQVYIC  459 (506)
T ss_pred             CCCCeEEeecceeEEEEE
Confidence            999999999877555544

>KOG0264|consensus

Probab=99.97  E-value=6.8e-30  Score=225.34  Aligned_cols=246  Identities=24%  Similarity=0.470  Sum_probs=208.5

Q ss_pred             eccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCc----------EEEEecccccCeeeEEECCCC-CEEEEEeCC
Q psy226          102 LSGHRSPVIKVIFHPVF-SLMASCSEDATIRLWDYETGE----------YERALHGHLDSVQDIAFDQSG-KLLVSCSAD  169 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~-~~latgs~dg~v~vwd~~~~~----------~~~~~~~h~~~V~~l~~~~~g-~~l~sgs~d  169 (406)
                      ..-|.+.|+.+.+.|.. .++||++..+.|.|||+..-.          ...++.||.+.-.+|+|++.. -.|++|+.|
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            34699999999999986 477788999999999976521          123788999988899999864 478999999


Q ss_pred             CcEEEEeCCCCe-------EEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcC--CCeEEEEeecCCccEEEEE
Q psy226          170 MSLKLWDMSTYQ-------CLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVA--TGYCVKTLTGHREWVRQIK  239 (406)
Q Consensus       170 ~~i~vwd~~~~~-------~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~--~~~~~~~~~~~~~~v~~l~  239 (406)
                      ++|++||+....       ....+.+|+..|..++|+|.. +++++++.|+.+.|||++  +.++.+...+|...|+|++
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~  279 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA  279 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence            999999997432       345678999999999999954 578899999999999999  5566777889999999999


Q ss_pred             ECC-CCCEEEEEeCCCeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEE
Q psy226          240 VSP-DGTLLASCSNDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIK  317 (406)
Q Consensus       240 ~~~-~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  317 (406)
                      |+| ++..||+||.|++|.+||+++. .++..+.+|...|.+|.|+|.                 ....|++++.|+.+.
T Consensus       280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh-----------------~etvLASSg~D~rl~  342 (422)
T KOG0264|consen  280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH-----------------NETVLASSGTDRRLN  342 (422)
T ss_pred             eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC-----------------CCceeEecccCCcEE
Confidence            999 5677899999999999999875 467889999999999999996                 356899999999999


Q ss_pred             EEECCC--------------CeEEEEEeCCCcCEEEEEEcCCCCE-EEEEeCCCeEEEEeCC
Q psy226          318 LWDVGS--------------GSLLFTLIGHDNWVRGVTFHPGGKY-LVSCGDDKTLRVWDTA  364 (406)
Q Consensus       318 lwd~~~--------------~~~~~~~~~h~~~v~~l~~s~~g~~-l~sgs~d~~i~vwd~~  364 (406)
                      +||+..              ..+++.-.||...|..+.|+|+..+ |+|.++|+.+.||...
T Consensus       343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            999853              1245677899999999999998875 5788999999999875

>KOG0641|consensus

Probab=99.97  E-value=2.2e-28  Score=197.40  Aligned_cols=243  Identities=26%  Similarity=0.447  Sum_probs=207.4

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE-----EEEecccccCeeeEEECC----CCCEEEEEe-CCCcE
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY-----ERALHGHLDSVQDIAFDQ----SGKLLVSCS-ADMSL  172 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~-----~~~~~~h~~~V~~l~~~~----~g~~l~sgs-~d~~i  172 (406)
                      +-|.+.|+|++|+|.|.++||||.|.+|++.-++....     ...+..|.+.|.+++|-.    .|.+|++++ .|..|
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            45889999999999999999999999999986554321     234667999999999954    356777765 46778


Q ss_pred             EEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeec-------CCccEEEEEECCCCC
Q psy226          173 KLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG-------HREWVRQIKVSPDGT  245 (406)
Q Consensus       173 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~~~~~~  245 (406)
                      .+-|..+++..+.+.||.+-|.++- +-++-.+++||.|.+|++||++-..++.++..       .+..|.+++..|.|+
T Consensus       166 y~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr  244 (350)
T KOG0641|consen  166 YITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR  244 (350)
T ss_pred             EEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc
Confidence            8889899999999999999998873 34688999999999999999998888877642       235789999999999


Q ss_pred             EEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC-
Q psy226          246 LLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG-  324 (406)
Q Consensus       246 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~-  324 (406)
                      ++++|-.|....+||++.++.++.+..|...|.|+.|+|+                  ..|+++++.|..|++-|+... 
T Consensus       245 ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~------------------a~yllt~syd~~ikltdlqgdl  306 (350)
T KOG0641|consen  245 LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG------------------AHYLLTCSYDMKIKLTDLQGDL  306 (350)
T ss_pred             eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC------------------ceEEEEecccceEEEeecccch
Confidence            9999999999999999999999999999999999999994                  568999999999999998632 


Q ss_pred             ---eEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          325 ---SLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       325 ---~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                         -++.....|...+..+.|+|..--+++.|.|+++.+|-+.
T Consensus       307 a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  307 AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence               2345666799999999999999889999999999999653

>KOG0300|consensus

Probab=99.97  E-value=2.7e-29  Score=212.00  Aligned_cols=262  Identities=29%  Similarity=0.509  Sum_probs=224.5

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEE
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAF  198 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~  198 (406)
                      ..+++.-.+++++.      ++.+.+.||.+.|..++.......+.++|.|.+.+||.++++.|+.++.||.+.|.+++|
T Consensus       125 srivssFk~~t~~~------~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikf  198 (481)
T KOG0300|consen  125 SRIVSSFKDGTVKF------RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKF  198 (481)
T ss_pred             chheeeecCCceeE------eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEe
Confidence            34555566666543      456778899999999998877789999999999999999999999999999999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEEc------CC------------------------------C----eEEEEeecCCccEEEE
Q psy226          199 LPNSDFVLSASRDKTIKMWEV------AT------------------------------G----YCVKTLTGHREWVRQI  238 (406)
Q Consensus       199 ~p~~~~l~s~s~d~~i~iwd~------~~------------------------------~----~~~~~~~~~~~~v~~l  238 (406)
                      ++.+.+++++|.|++-.||..      ..                              +    .++..+.+|...|.+.
T Consensus       199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~  278 (481)
T KOG0300|consen  199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC  278 (481)
T ss_pred             ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence            999999999999999999972      11                              0    1234577899999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEE
Q psy226          239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL  318 (406)
Q Consensus       239 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~l  318 (406)
                      .|-..|+.+++++.|.+..+||+++++.++.+.+|+....-+.-.|                  ...++++++.|-+.|+
T Consensus       279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp------------------tQrLVvTsSrDtTFRL  340 (481)
T KOG0300|consen  279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP------------------TQRLVVTSSRDTTFRL  340 (481)
T ss_pred             hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC------------------cceEEEEeccCceeEe
Confidence            9999999999999999999999999999999999999887776666                  4678999999999999


Q ss_pred             EECCCC-eEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-cceeeccccceEEEEEEeCCCCEEEEeeC
Q psy226          319 WDVGSG-SLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR-NMKTLEAHSHFVTSLDFHRAHPYVVTGSV  396 (406)
Q Consensus       319 wd~~~~-~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~-~~~~l~~h~~~v~~l~~~~~~~~l~sgs~  396 (406)
                      ||++.. ..+..|.||...|+++.|..+ ..+++||+|.+|+|||+++.+ .+.++.. ...++.++.+..++++|---.
T Consensus       341 WDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhD  418 (481)
T KOG0300|consen  341 WDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHD  418 (481)
T ss_pred             ccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccC
Confidence            999843 457789999999999999865 567899999999999998654 5666654 457999999999999999988


Q ss_pred             CCeEEEeecC
Q psy226          397 DKTVKVWECR  406 (406)
Q Consensus       397 Dg~v~iw~~~  406 (406)
                      +..|++||+.
T Consensus       419 NRqvRlfDln  428 (481)
T KOG0300|consen  419 NRQVRLFDLN  428 (481)
T ss_pred             CceEEEEecC
Confidence            8999999973

>KOG0310|consensus

Probab=99.97  E-value=6.9e-30  Score=226.97  Aligned_cols=239  Identities=27%  Similarity=0.452  Sum_probs=205.3

Q ss_pred             cccCeeeEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEE
Q psy226          147 HLDSVQDIAFDQSGK-LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV  225 (406)
Q Consensus       147 h~~~V~~l~~~~~g~-~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~  225 (406)
                      ..+.|.+++|+|... -+++.+ .-.+.+|+..+....+++......+.++.|-.||.+|++|...|.|+++|..+...+
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL  103 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL  103 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence            346899999999654 344443 346999998887777777777889999999999999999999999999998776678


Q ss_pred             EEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCC
Q psy226          226 KTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGG  304 (406)
Q Consensus       226 ~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (406)
                      ..+.+|+.++..+.|+|++ .+|++|++|+.+++||+.+......+.+|+..|.|.+|+|.                 ++
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~-----------------~~  166 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPA-----------------ND  166 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccC-----------------CC
Confidence            8899999999999999965 56788999999999999998876689999999999999984                 45


Q ss_pred             CEEEEEeCCCcEEEEECCCC-eEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ccceeeccccceEEEE
Q psy226          305 PYLATGSRDKTIKLWDVGSG-SLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK-RNMKTLEAHSHFVTSL  382 (406)
Q Consensus       305 ~~l~s~~~d~~i~lwd~~~~-~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~-~~~~~l~~h~~~v~~l  382 (406)
                      .++++|+.||.||+||++.. ..+.++ .|..+|.++.+-|.|..+++++. ..|+|||+-+| +.+.....|...|+||
T Consensus       167 hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL  244 (487)
T KOG0310|consen  167 HIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCL  244 (487)
T ss_pred             eEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEE
Confidence            68999999999999999987 555554 58899999999999999999885 57999999855 4455555599999999


Q ss_pred             EEeCCCCEEEEeeCCCeEEEeec
Q psy226          383 DFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       383 ~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .+..++..|+|||-||.|++||.
T Consensus       245 ~l~s~~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  245 RLASDSTRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             EeecCCceEeecccccceEEEEc
Confidence            99999999999999999999984

>KOG0275|consensus

Probab=99.97  E-value=1.3e-30  Score=220.64  Aligned_cols=240  Identities=25%  Similarity=0.416  Sum_probs=211.1

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC  182 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~  182 (406)
                      -|.++|.|+.|+.|..+||+|+.||.|+||.+.+|.+++.+. .|+..|+|+.|+.|+..+++++.|.++++--+.+|++
T Consensus       261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~  340 (508)
T KOG0275|consen  261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC  340 (508)
T ss_pred             ecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh
Confidence            378899999999999999999999999999999999988886 8999999999999999999999999999999999999


Q ss_pred             EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC--CccEEEEEECC-CCCEEEEEeCCCeEEEE
Q psy226          183 LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH--REWVRQIKVSP-DGTLLASCSNDHTARVW  259 (406)
Q Consensus       183 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~-~~~~l~s~~~d~~v~vw  259 (406)
                      ++.++||...|+...|.++|+.++++|.||+|++|+..+..|+.+++..  ..+|+.+..-| +..+++.|...+++.+-
T Consensus       341 LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im  420 (508)
T KOG0275|consen  341 LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM  420 (508)
T ss_pred             HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence            9999999999999999999999999999999999999999999998753  34677777776 45789999999999999


Q ss_pred             eCCCccceeEEecC---CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcC
Q psy226          260 SLATKETKAELRGH---DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNW  336 (406)
Q Consensus       260 d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~  336 (406)
                      ++.. +.+..+...   .+..-+...+|                  .|.++.+.+.|+.++.|...+|++.+++.-|+.-
T Consensus       421 n~qG-QvVrsfsSGkREgGdFi~~~lSp------------------kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd  481 (508)
T KOG0275|consen  421 NMQG-QVVRSFSSGKREGGDFINAILSP------------------KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD  481 (508)
T ss_pred             eccc-eEEeeeccCCccCCceEEEEecC------------------CCcEEEEEccCcEEEEEEeecCceeeeeeccccc
Confidence            8853 333333211   11122233344                  5889999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy226          337 VRGVTFHPGGKYLVSCGDDKTLRVWD  362 (406)
Q Consensus       337 v~~l~~s~~g~~l~sgs~d~~i~vwd  362 (406)
                      |-.++-+|..+.|++-++||.+++|.
T Consensus       482 vIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  482 VIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccccccCcccchhhhhcccchhhhcC
Confidence            99999999999999999999999994

>KOG0267|consensus

Probab=99.97  E-value=3e-31  Score=245.46  Aligned_cols=259  Identities=25%  Similarity=0.501  Sum_probs=236.1

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEE
Q psy226          116 PVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTG  195 (406)
Q Consensus       116 p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~  195 (406)
                      |.+.+++.+..+-.+++||...      +..|...|.++..-..++.+++|+.|..+-+|.+....++..+.+|+.+|.+
T Consensus         2 ~~~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeS   75 (825)
T KOG0267|consen    2 PGMEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIES   75 (825)
T ss_pred             Ccccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCccee
Confidence            4445566666677788888543      4468888888888778899999999999999999887777789999999999


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCc
Q psy226          196 VAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDH  275 (406)
Q Consensus       196 ~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~  275 (406)
                      +.|++...+|++|+.+|+|++||+..+..++++.+|...+..+.|+|-+.++++|+.|..+++||.+...+...+.+|..
T Consensus        76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~  155 (825)
T KOG0267|consen   76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR  155 (825)
T ss_pred             eecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCC
Q psy226          276 TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDD  355 (406)
Q Consensus       276 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d  355 (406)
                      .+.++.|.|                  +|.++++|+.|.+++|||+..|+....|.+|...+..+.|+|..-.+++||.|
T Consensus       156 vv~~l~lsP------------------~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d  217 (825)
T KOG0267|consen  156 VVDVLRLSP------------------DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSD  217 (825)
T ss_pred             eeEEEeecC------------------CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCC
Confidence            999999999                  58899999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCC
Q psy226          356 KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDK  398 (406)
Q Consensus       356 ~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg  398 (406)
                      +++++||+++.+.+.........|.+++|+|++..+++|..+.
T Consensus       218 ~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  218 RTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            9999999999998888887788899999999999999886543

>KOG0640|consensus

Probab=99.97  E-value=1.9e-29  Score=212.32  Aligned_cols=251  Identities=25%  Similarity=0.472  Sum_probs=205.0

Q ss_pred             CCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc--cccCeeeEEECCCCCEEEEEeCCCcEE
Q psy226           96 APEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHG--HLDSVQDIAFDQSGKLLVSCSADMSLK  173 (406)
Q Consensus        96 ~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~--h~~~V~~l~~~~~g~~l~sgs~d~~i~  173 (406)
                      .|...+|-.|.++|+++.|||...+|++|+.|++|+++|+......+.++-  ...+|.++.|+|.|.+|+.|..-.+++
T Consensus       162 hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~r  241 (430)
T KOG0640|consen  162 HPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLR  241 (430)
T ss_pred             CceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCcee
Confidence            466678889999999999999999999999999999999987654444332  346899999999999999999999999


Q ss_pred             EEeCCCCeEEEEE---ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee-cC-CccEEEEEECCCCCEEE
Q psy226          174 LWDMSTYQCLKTM---QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT-GH-REWVRQIKVSPDGTLLA  248 (406)
Q Consensus       174 vwd~~~~~~~~~~---~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~-~~~v~~l~~~~~~~~l~  248 (406)
                      +||+.+.+|...-   .+|...|+++.+++++++.++||.||.|++||--+++|+.++. .| ...|.+..|..+|++++
T Consensus       242 lYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL  321 (430)
T KOG0640|consen  242 LYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL  321 (430)
T ss_pred             EEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEe
Confidence            9999999986443   4688999999999999999999999999999999999998875 34 34788999999999999


Q ss_pred             EEeCCCeEEEEeCCCccceeEEecCCce--E---EEEEeCCCCCccccccccCCCCCCCCCCEEEEEe-CCCcEEEEECC
Q psy226          249 SCSNDHTARVWSLATKETKAELRGHDHT--V---ECVAWAPGVASESISEAAGRPPGQGGGPYLATGS-RDKTIKLWDVG  322 (406)
Q Consensus       249 s~~~d~~v~vwd~~~~~~~~~~~~~~~~--v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~lwd~~  322 (406)
                      +.+.|..+++|.+.+++.+....+-...  .   ....|+                  ....|++.-. ..+.+.-||.+
T Consensus       322 sSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFN------------------htEdyVl~pDEas~slcsWdaR  383 (430)
T KOG0640|consen  322 SSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFN------------------HTEDYVLFPDEASNSLCSWDAR  383 (430)
T ss_pred             ecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhc------------------CccceEEccccccCceeecccc
Confidence            9999999999999999988776643110  0   000111                  1223443322 34678999999


Q ss_pred             CCeEEEE-EeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          323 SGSLLFT-LIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       323 ~~~~~~~-~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      ++..+.. -.+|.+.++.+.-||.+.-+.+||+|..+|+|-.+
T Consensus       384 tadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  384 TADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             chhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            8765443 35899999999999999999999999999999643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.97  E-value=5e-27  Score=213.83  Aligned_cols=266  Identities=20%  Similarity=0.227  Sum_probs=204.1

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEecCCcceEEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL-VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGV  196 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l-~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  196 (406)
                      +.++++++.|+.|++||..+++....+..+. .+.+++|+|+|+.+ ++++.++.|++||..+++....+..+.. +..+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~   78 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF   78 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence            3578899999999999999998888887654 46789999999876 5677889999999999887776665443 5678


Q ss_pred             EEecCCCEEEE-EeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC-eEEEEeCCCccceeEEecCC
Q psy226          197 AFLPNSDFVLS-ASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH-TARVWSLATKETKAELRGHD  274 (406)
Q Consensus       197 ~~~p~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~  274 (406)
                      +|+|+++.+++ ++.|+.|++||+.++..+..+..+ ..+..++|+|+|.++++++.++ .+.+||..+......+.. .
T Consensus        79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~  156 (300)
T TIGR03866        79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D  156 (300)
T ss_pred             EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence            99999997755 456899999999988777776533 3467899999999999988775 567789877655443322 2


Q ss_pred             ceEEEEEeCCCCCccccccccCCCCCCCCCCEE-EEEeCCCcEEEEECCCCeEEEEEeCCC-------cCEEEEEEcCCC
Q psy226          275 HTVECVAWAPGVASESISEAAGRPPGQGGGPYL-ATGSRDKTIKLWDVGSGSLLFTLIGHD-------NWVRGVTFHPGG  346 (406)
Q Consensus       275 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~lwd~~~~~~~~~~~~h~-------~~v~~l~~s~~g  346 (406)
                      ..+..+.|+|                  ++.++ +++..++.|++||+.+++.+..+..+.       .....++|+|+|
T Consensus       157 ~~~~~~~~s~------------------dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  218 (300)
T TIGR03866       157 QRPRFAEFTA------------------DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG  218 (300)
T ss_pred             CCccEEEECC------------------CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence            2345677776                  35556 455569999999999988776654321       123568899999


Q ss_pred             CEEEE-EeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEe-eCCCeEEEeecC
Q psy226          347 KYLVS-CGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG-SVDKTVKVWECR  406 (406)
Q Consensus       347 ~~l~s-gs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sg-s~Dg~v~iw~~~  406 (406)
                      ++++. .+.++.|.+||..+++.+..+. +...+.+++|+|++++|+++ +.+|.|++||.+
T Consensus       219 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       219 KTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            98654 4567789999998887766553 44578999999999999876 569999999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2445|consensus

Probab=99.97  E-value=6.7e-28  Score=202.84  Aligned_cols=245  Identities=24%  Similarity=0.472  Sum_probs=198.1

Q ss_pred             ecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC----CCeEEEEEecCCcceEEEEEec--CCCEEEEEeCCCcEEEE
Q psy226          144 LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS----TYQCLKTMQGHDHNVTGVAFLP--NSDFVLSASRDKTIKMW  217 (406)
Q Consensus       144 ~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~----~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~iw  217 (406)
                      ..+|.+-|+++.|++.|+++++|+.|++|+|||..    +..+....+.|.+.|..+.|.+  -|+.++++|.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            35788999999999999999999999999999953    4667788899999999999976  47899999999999999


Q ss_pred             EcCC---------CeEEEEeecCCccEEEEEECC--CCCEEEEEeCCCeEEEEeCCCcc------ceeEEe-------cC
Q psy226          218 EVAT---------GYCVKTLTGHREWVRQIKVSP--DGTLLASCSNDHTARVWSLATKE------TKAELR-------GH  273 (406)
Q Consensus       218 d~~~---------~~~~~~~~~~~~~v~~l~~~~--~~~~l~s~~~d~~v~vwd~~~~~------~~~~~~-------~~  273 (406)
                      .-..         -....++...+..|+.+.|.|  -|-.+|+++.||++|||+.....      ..++++       .+
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            8621         123456677788899999999  47789999999999999865432      222333       45


Q ss_pred             CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC-----CcEEEEECCCC----eEEEEEeCCCcCEEEEEEcC
Q psy226          274 DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD-----KTIKLWDVGSG----SLLFTLIGHDNWVRGVTFHP  344 (406)
Q Consensus       274 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~lwd~~~~----~~~~~~~~h~~~v~~l~~s~  344 (406)
                      ..+..|+.|+|...               ..++||.|+.+     +.++||....+    ..+.++.+|..+|++++|.|
T Consensus       169 ~~~~~CvsWn~sr~---------------~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRM---------------HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             cCcceEEeeccccc---------------cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence            66778899987532               35678888876     47899976443    34567889999999999999


Q ss_pred             CC----CEEEEEeCCCeEEEEeCCCC--------------------ccceeeccccceEEEEEEeCCCCEEEEeeCCCeE
Q psy226          345 GG----KYLVSCGDDKTLRVWDTANK--------------------RNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTV  400 (406)
Q Consensus       345 ~g----~~l~sgs~d~~i~vwd~~~~--------------------~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v  400 (406)
                      +-    ..||+++.|| |+||.+...                    +.+..+..|.+.|..+.|+-.|..|+|.|.||.|
T Consensus       234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V  312 (361)
T KOG2445|consen  234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV  312 (361)
T ss_pred             ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence            62    4689999999 999998631                    2345567899999999999999999999999999


Q ss_pred             EEee
Q psy226          401 KVWE  404 (406)
Q Consensus       401 ~iw~  404 (406)
                      ++|.
T Consensus       313 RLWk  316 (361)
T KOG2445|consen  313 RLWK  316 (361)
T ss_pred             eehh
Confidence            9996

>KOG1274|consensus

Probab=99.97  E-value=1.2e-27  Score=227.31  Aligned_cols=265  Identities=20%  Similarity=0.333  Sum_probs=222.6

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG-EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC  182 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~  182 (406)
                      +|+..-+.|+|.|+|+.|.+|+.||.|++|+..+. +...++..+...|.+++..  +.+|++|+.+++|.+|.+.+++.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence            68888999999999999999999999999997765 4444454477788888764  45999999999999999988776


Q ss_pred             EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy226          183 LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       183 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~  262 (406)
                      -..+....-++.+++|+.+|++++.||.|-.|++-+..+....+.+.+|..+|.++.|+|++++||+.+-||.|++||+.
T Consensus        89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~  168 (933)
T KOG1274|consen   89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ  168 (933)
T ss_pred             cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence            55555567789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceeEEecC--------CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC--
Q psy226          263 TKETKAELRGH--------DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG--  332 (406)
Q Consensus       263 ~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~--  332 (406)
                      ++.....+.+-        ...+..++|+|                  .+..++..+.|+.|++|+.......+.+..  
T Consensus       169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P------------------k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~  230 (933)
T KOG1274|consen  169 DGILSKTLTGVDKDNEFILSRICTRLAWHP------------------KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL  230 (933)
T ss_pred             cchhhhhcccCCccccccccceeeeeeecC------------------CCCeEEeeccCCeEEEEccCCceeheeecccc
Confidence            87766555432        23456678887                  355677788899999999998888777754  


Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEE
Q psy226          333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVV  392 (406)
Q Consensus       333 h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~  392 (406)
                      +...++.+.|+|+|+|||+++.||.|-|||..+-..    ......|.+++|.|+.+-+-
T Consensus       231 ~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it  286 (933)
T KOG1274|consen  231 SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAIT  286 (933)
T ss_pred             cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeE
Confidence            445599999999999999999999999999987221    22345799999999987553

>KOG0299|consensus

Probab=99.97  E-value=1.3e-28  Score=217.34  Aligned_cols=244  Identities=25%  Similarity=0.424  Sum_probs=208.4

Q ss_pred             EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEE----EE-------------E-ecCCcceEEEEEecCCC
Q psy226          142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCL----KT-------------M-QGHDHNVTGVAFLPNSD  203 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~----~~-------------~-~~h~~~v~~~~~~p~~~  203 (406)
                      ..+..|..+|.+++++|++.+.++++.|++|.-|++.+++..    ..             - ++|...+.+++.+||++
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            345679999999999999999999999999999998776522    11             1 27888899999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeC
Q psy226          204 FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWA  283 (406)
Q Consensus       204 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~  283 (406)
                      +|++|+.|..|.||+..+...++.+.+|.+.|.+++|-.....+++++.|+++++|++.....+.++.+|...|..+.-.
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL  295 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL  295 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence            99999999999999999999999999999999999999888899999999999999999888888999999998887543


Q ss_pred             CCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy226          284 PGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~  363 (406)
                      .                  .+..+-+|+.|+++++|++... .-..+.+|.+.+-|++|-. ...+++||+||.|.+|++
T Consensus       296 ~------------------reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  296 S------------------RERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSL  355 (479)
T ss_pred             c------------------ccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeee
Confidence            2                  2445666779999999999543 3346788998999999975 467899999999999999


Q ss_pred             CCCccceeec-cc-----------cceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          364 ANKRNMKTLE-AH-----------SHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       364 ~~~~~~~~l~-~h-----------~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ...+++.+.. +|           ...|++|+..|...++|+||.+|.|++|.+
T Consensus       356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i  409 (479)
T KOG0299|consen  356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI  409 (479)
T ss_pred             cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence            8877665442 22           227999999999999999999999999975

>KOG1332|consensus

Probab=99.96  E-value=8.5e-29  Score=201.88  Aligned_cols=248  Identities=23%  Similarity=0.401  Sum_probs=203.3

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---cEEEEecccccCeeeEEECC--CCCEEEEEeCCCcEEEEeC
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG---EYERALHGHLDSVQDIAFDQ--SGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~---~~~~~~~~h~~~V~~l~~~~--~g~~l~sgs~d~~i~vwd~  177 (406)
                      .+|.+-|..+.+.-.|..|||||.|++|+|+..++.   .++..|.||.++|..++|..  -|.+||+++.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            468888888888888999999999999999998764   46778999999999999966  7999999999999999998


Q ss_pred             CCCe--EEEEEecCCcceEEEEEecCC--CEEEEEeCCCcEEEEEcCCC--e-EEEEeecCCccEEEEEECCC---C---
Q psy226          178 STYQ--CLKTMQGHDHNVTGVAFLPNS--DFVLSASRDKTIKMWEVATG--Y-CVKTLTGHREWVRQIKVSPD---G---  244 (406)
Q Consensus       178 ~~~~--~~~~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~i~iwd~~~~--~-~~~~~~~~~~~v~~l~~~~~---~---  244 (406)
                      .+++  .......|+..|++++|-|.+  -.|++++.||.|.+.+.+..  . ..+....|.--|++++|.|.   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            7663  234556799999999999964  57899999999999988653  2 23445689999999999986   4   


Q ss_pred             --------CEEEEEeCCCeEEEEeCCCcc--ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC
Q psy226          245 --------TLLASCSNDHTARVWSLATKE--TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK  314 (406)
Q Consensus       245 --------~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  314 (406)
                              +.|++|+.|..|+||+....+  ....|.+|..-|+.++|.|....              ...++++++.||
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl--------------~~s~iAS~SqDg  233 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL--------------PKSTIASCSQDG  233 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC--------------CceeeEEecCCC
Confidence                    569999999999999987742  23458899999999999996432              234799999999


Q ss_pred             cEEEEECCCCe---EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          315 TIKLWDVGSGS---LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       315 ~i~lwd~~~~~---~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      +|.||..+...   ....+......+..++||+.|+.|+.++.|+.|.+|.-+
T Consensus       234 ~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  234 TVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            99999865321   111223345679999999999999999999999999643

>KOG0646|consensus

Probab=99.96  E-value=4.3e-28  Score=214.46  Aligned_cols=265  Identities=22%  Similarity=0.342  Sum_probs=212.4

Q ss_pred             EEeCCCc-EEEEEcCCCcEEEEecccc-cCeeeEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEecCCcceEEEEEe
Q psy226          123 SCSEDAT-IRLWDYETGEYERALHGHL-DSVQDIAFDQSGKLLVSCSA-DMSLKLWDMSTYQCLKTMQGHDHNVTGVAFL  199 (406)
Q Consensus       123 tgs~dg~-v~vwd~~~~~~~~~~~~h~-~~V~~l~~~~~g~~l~sgs~-d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  199 (406)
                      +++.|.. +.+||+.+|.....+++.. ..-.++..- .+.+++++.. -..+.+|.+..........--.++|.+++-+
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~   90 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS   90 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence            3444544 9999999998877777542 111222111 2356666654 4578899886543332222235679999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCC---------CccceeEE
Q psy226          200 PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA---------TKETKAEL  270 (406)
Q Consensus       200 p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~---------~~~~~~~~  270 (406)
                      |+|.+|+.|+-.+.|++|.+.+|..+..+..|-..|+++.|+.||.+|+|||.||.|.+|++.         +..+...+
T Consensus        91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f  170 (476)
T KOG0646|consen   91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF  170 (476)
T ss_pred             CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence            999999999899999999999999999999999999999999999999999999999999863         34567788


Q ss_pred             ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEE
Q psy226          271 RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLV  350 (406)
Q Consensus       271 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~  350 (406)
                      ..|.-+|..+...++.                ...+++++|.|.++|+||+..|.++.++. .+..+.+++.+|.++.++
T Consensus       171 ~~HtlsITDl~ig~Gg----------------~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~y  233 (476)
T KOG0646|consen  171 SDHTLSITDLQIGSGG----------------TNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVY  233 (476)
T ss_pred             ccCcceeEEEEecCCC----------------ccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEE
Confidence            8999999998877652                24579999999999999999999887765 456699999999999999


Q ss_pred             EEeCCCeEEEEeCCCC----------------ccceeeccccc--eEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          351 SCGDDKTLRVWDTANK----------------RNMKTLEAHSH--FVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       351 sgs~d~~i~vwd~~~~----------------~~~~~l~~h~~--~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .|+.+|.|.+.++...                ..+..+.+|.+  .|+||+.+-||.+|++|+.||.|.|||.
T Consensus       234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence            9999999998876432                23456678888  8999999999999999999999999996

>KOG1273|consensus

Probab=99.96  E-value=6.1e-28  Score=203.65  Aligned_cols=277  Identities=16%  Similarity=0.286  Sum_probs=214.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQG  188 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~  188 (406)
                      -+|+.|++-|.+||+|+.||.|.|||+.|....+.+.+|..+|.+++|+++|+.|+|+|.|..|++||+..+.+++.++ 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            6799999999999999999999999999999888999999999999999999999999999999999999999988877 


Q ss_pred             CCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEEeecCC----ccEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy226          189 HDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKTLTGHR----EWVRQIKVSPDGTLLASCSNDHTARVWSLAT  263 (406)
Q Consensus       189 h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~----~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~  263 (406)
                      ...+|+.+.|+|... ..++.--+..-.+-++..+.....-....    ....+..|.+.|+++++|..-|.+.++|..+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t  184 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET  184 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence            467999999999654 33333333334445554422111111000    1112345889999999999999999999999


Q ss_pred             ccceeEEecCC-ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC----e--EE---EEEeC-
Q psy226          264 KETKAELRGHD-HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG----S--LL---FTLIG-  332 (406)
Q Consensus       264 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~----~--~~---~~~~~-  332 (406)
                      .+.+..++-.. ..|..+.++-                  .|.+|+..+.|+.||.|+++.-    +  .+   +.+.. 
T Consensus       185 ~e~vas~rits~~~IK~I~~s~------------------~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv  246 (405)
T KOG1273|consen  185 LECVASFRITSVQAIKQIIVSR------------------KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV  246 (405)
T ss_pred             heeeeeeeechheeeeEEEEec------------------cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence            88887776555 5666666543                  5889999999999999998621    1  00   01100 


Q ss_pred             -CCcCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCccceeecccc-ceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          333 -HDNWVRGVTFHPGGKYLVSCGD-DKTLRVWDTANKRNMKTLEAHS-HFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       333 -h~~~v~~l~~s~~g~~l~sgs~-d~~i~vwd~~~~~~~~~l~~h~-~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                       ..-.-.+++||.+|.|++.|+. -..++||....|..++.|.+.. ....+++|+|-.+.+++- ..|.|.+|..
T Consensus       247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV  321 (405)
T ss_pred             HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence             0112357899999999987764 5689999999999999998876 567899999999999988 7899999974

>KOG0301|consensus

Probab=99.96  E-value=4.6e-28  Score=223.58  Aligned_cols=236  Identities=27%  Similarity=0.457  Sum_probs=204.0

Q ss_pred             EEeccCCCCeEE-EEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226          100 FALSGHRSPVIK-VIFHP-VFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus       100 ~~l~~h~~~V~~-v~~~p-~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      ..+.+|.+-|.+ +++-+ ++-.+++|+.|+++.+|...+.....++++|...|.+++...++. +++||.|.++++|..
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~  129 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI  129 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence            346778887877 88775 555799999999999999999999999999999999999888887 999999999999976


Q ss_pred             CCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Q psy226          178 STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTAR  257 (406)
Q Consensus       178 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~  257 (406)
                        +++...+.+|+..|+++++.|.+ .++|||.|.+|++|.-  +.++++|.+|.+.|+.+++-|++ .|+||++||.|+
T Consensus       130 --~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir  203 (745)
T KOG0301|consen  130 --GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIR  203 (745)
T ss_pred             --hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEE
Confidence              45667799999999999999987 8899999999999975  77899999999999999998765 589999999999


Q ss_pred             EEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCE
Q psy226          258 VWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV  337 (406)
Q Consensus       258 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v  337 (406)
                      .|++ +++.+.++.+|+.-++++...+                  ++..+++++.|++++||+..  .+...+.-....|
T Consensus       204 ~w~~-~ge~l~~~~ghtn~vYsis~~~------------------~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsi  262 (745)
T KOG0301|consen  204 LWDL-DGEVLLEMHGHTNFVYSISMAL------------------SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSI  262 (745)
T ss_pred             EEec-cCceeeeeeccceEEEEEEecC------------------CCCeEEEecCCceEEEeecC--ceEEEEecCccce
Confidence            9999 7788899999999999998655                  35689999999999999976  5555544344468


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          338 RGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       338 ~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      .++.+-++|. |++|++||.||||...
T Consensus       263 Wsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  263 WSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEEEEeeCCC-EEEeccCceEEEEEec
Confidence            8888888886 4678889999999765

>KOG1539|consensus

Probab=99.96  E-value=7.7e-27  Score=219.51  Aligned_cols=310  Identities=21%  Similarity=0.385  Sum_probs=243.3

Q ss_pred             CCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCC-EEEEEeCCCcEEE
Q psy226           96 APEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK-LLVSCSADMSLKL  174 (406)
Q Consensus        96 ~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~-~l~sgs~d~~i~v  174 (406)
                      ....++++++.+.|+++.-+|--..+|.|..+|+|.++++..++.+..++...+.|++++|..||. .|++|+..|.+-+
T Consensus       192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~  271 (910)
T KOG1539|consen  192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF  271 (910)
T ss_pred             CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence            445678899999999999999999999999999999999999999999985569999999999997 5677778899999


Q ss_pred             EeCCCCeEEEEEe-cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC----eEEEEeecCCccEEEEEEC-CCCCEEE
Q psy226          175 WDMSTYQCLKTMQ-GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG----YCVKTLTGHREWVRQIKVS-PDGTLLA  248 (406)
Q Consensus       175 wd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~~~~~v~~l~~~-~~~~~l~  248 (406)
                      ||++..+.+..+. .|.+.|....|.|....+++++.|+.+++|=..++    +.++.-.||..+..++.|- .+|..+.
T Consensus       272 wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il  351 (910)
T KOG1539|consen  272 WDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL  351 (910)
T ss_pred             EEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEE
Confidence            9999877766655 78899999999999999999999999999855543    3456667999999999997 6889999


Q ss_pred             EEeCCCeEEEEeCCCccceeEE------------------------------------------ecCCceEEEEEeCCCC
Q psy226          249 SCSNDHTARVWSLATKETKAEL------------------------------------------RGHDHTVECVAWAPGV  286 (406)
Q Consensus       249 s~~~d~~v~vwd~~~~~~~~~~------------------------------------------~~~~~~v~~~~~~~~~  286 (406)
                      +++.|++.+.+++......+.+                                          ..|.....+-.|.-..
T Consensus       352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n  431 (910)
T KOG1539|consen  352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN  431 (910)
T ss_pred             ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence            9999999998876432111000                                          0111111111221110


Q ss_pred             Ccc--cc---------ccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE---eCCCcCEEEEEEcCCCCEEEEE
Q psy226          287 ASE--SI---------SEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL---IGHDNWVRGVTFHPGGKYLVSC  352 (406)
Q Consensus       287 ~~~--~~---------~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~---~~h~~~v~~l~~s~~g~~l~sg  352 (406)
                      ...  .+         ...+........|++.+.|+..|.|-+||+++|.....+   ..|..+|++++.+.-++.++++
T Consensus       432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa  511 (910)
T KOG1539|consen  432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA  511 (910)
T ss_pred             cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEc
Confidence            000  00         000000011235889999999999999999999888888   5799999999999999999999


Q ss_pred             eCCCeEEEEeCCCCc-----------------------------------------cceeeccccceEEEEEEeCCCCEE
Q psy226          353 GDDKTLRVWDTANKR-----------------------------------------NMKTLEAHSHFVTSLDFHRAHPYV  391 (406)
Q Consensus       353 s~d~~i~vwd~~~~~-----------------------------------------~~~~l~~h~~~v~~l~~~~~~~~l  391 (406)
                      +.+|.+++||...+.                                         .++.+.+|.+.|++++|+|||++|
T Consensus       512 ~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWl  591 (910)
T KOG1539|consen  512 GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWL  591 (910)
T ss_pred             cCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEE
Confidence            999999999976543                                         123355799999999999999999


Q ss_pred             EEeeCCCeEEEeec
Q psy226          392 VTGSVDKTVKVWEC  405 (406)
Q Consensus       392 ~sgs~Dg~v~iw~~  405 (406)
                      ++++.|++|++||+
T Consensus       592 isasmD~tIr~wDl  605 (910)
T KOG1539|consen  592 ISASMDSTIRTWDL  605 (910)
T ss_pred             EEeecCCcEEEEec
Confidence            99999999999996

>KOG0268|consensus

Probab=99.96  E-value=3.1e-29  Score=215.05  Aligned_cols=243  Identities=23%  Similarity=0.422  Sum_probs=206.0

Q ss_pred             EEEEecccccCeeeEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEE
Q psy226          140 YERALHGHLDSVQDIAFDQSG-KLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE  218 (406)
Q Consensus       140 ~~~~~~~h~~~V~~l~~~~~g-~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd  218 (406)
                      ++..+.||.+.|.+++=+|.. ..+++|+.||.|++||+.+..+..++..|.+.|.++++..  ..+++++.|.+|+.|-
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence            345578899999999999976 6899999999999999999999999999999999999975  6789999999999998


Q ss_pred             cCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCC
Q psy226          219 VATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       219 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                      +.. ...+++.+. ..+..+..+..+..++|||.+  |.|||.....++..+.-....|.++.|+|...           
T Consensus       136 ~~~-~p~~tilg~-s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-----------  200 (433)
T KOG0268|consen  136 IDG-PPLHTILGK-SVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVET-----------  200 (433)
T ss_pred             ccC-Ccceeeecc-ccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcc-----------
Confidence            754 355665543 335566666777889999765  89999998889988888888999999998643           


Q ss_pred             CCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ccceeeccccc
Q psy226          299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK-RNMKTLEAHSH  377 (406)
Q Consensus       299 ~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~-~~~~~l~~h~~  377 (406)
                            .+|++|..|+.|.|||++.+.++..+.- .-.-+.++|+|.+--+++|++|..++.+|++.. ..+....+|.+
T Consensus       201 ------sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs  273 (433)
T KOG0268|consen  201 ------SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS  273 (433)
T ss_pred             ------hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccce
Confidence                  4689999999999999999988765542 223567899997777889999999999998763 46777789999


Q ss_pred             eEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          378 FVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       378 ~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      .|.+++|+|.|+-++|||.|.+|+||..+
T Consensus       274 AV~dVdfsptG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             eEEEeccCCCcchhccccccceEEEeecC
Confidence            99999999999999999999999999753

>KOG0646|consensus

Probab=99.96  E-value=4.6e-28  Score=214.29  Aligned_cols=240  Identities=20%  Similarity=0.334  Sum_probs=202.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC------
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS------  178 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~------  178 (406)
                      -.++|.|++-+|.|.+|+.|...|.+++|.+.+|.++..+.+|...|+|+.|+.||.+|+|||.||.|.+|++.      
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999763      


Q ss_pred             ---CCeEEEEEecCCcceEEEEEecCC--CEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCC
Q psy226          179 ---TYQCLKTMQGHDHNVTGVAFLPNS--DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       179 ---~~~~~~~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                         +-+.++.+.+|.-+|+.+...+.|  ..|+++|.|.++++||+..|..+.++. ....+.+++++|-+..+..|+.+
T Consensus       160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCc
Confidence               345678899999999999987653  589999999999999999998887775 45668999999999999999999


Q ss_pred             CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC
Q psy226          254 HTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH  333 (406)
Q Consensus       254 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h  333 (406)
                      |.|.+.++......      ...|.                                     .+.++. .+..+..+.||
T Consensus       239 G~I~~~~~~~~~~~------~~~v~-------------------------------------~k~~~~-~~t~~~~~~Gh  274 (476)
T KOG0646|consen  239 GKIFQNLLFKLSGQ------SAGVN-------------------------------------QKGRHE-ENTQINVLVGH  274 (476)
T ss_pred             ceEEeeehhcCCcc------ccccc-------------------------------------cccccc-ccceeeeeccc
Confidence            99999887542210      00000                                     111221 23345577888


Q ss_pred             Cc--CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCC
Q psy226          334 DN--WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP  389 (406)
Q Consensus       334 ~~--~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~  389 (406)
                      .+  .|+|++++-||..|++|+.||.++|||+.+.++++++....++|+.+.+.|-.+
T Consensus       275 ~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  275 ENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             cCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence            77  999999999999999999999999999999999999987788999999976543

>KOG1539|consensus

Probab=99.96  E-value=1.4e-27  Score=224.44  Aligned_cols=283  Identities=24%  Similarity=0.392  Sum_probs=235.3

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--C--cEEEEecccccCeeeEEEC-CCCCEEEEEeCCCcEEEEe
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYET--G--EYERALHGHLDSVQDIAFD-QSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~--~--~~~~~~~~h~~~V~~l~~~-~~g~~l~sgs~d~~i~vwd  176 (406)
                      ...|.+.|+...|-|..+.++|++.|+.+++|=..+  |  ++++.-.||..+..++.|. .+|..+.+++.|++.+.++
T Consensus       284 ~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs  363 (910)
T KOG1539|consen  284 RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFS  363 (910)
T ss_pred             eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhh
Confidence            447888999999999999999999999999995544  3  4566667999999999987 6788999999999888876


Q ss_pred             CCC-------Ce---------------------E--------------------------EEEE-----------ecCC-
Q psy226          177 MST-------YQ---------------------C--------------------------LKTM-----------QGHD-  190 (406)
Q Consensus       177 ~~~-------~~---------------------~--------------------------~~~~-----------~~h~-  190 (406)
                      +..       ++                     .                          ..++           ..+. 
T Consensus       364 ~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~  443 (910)
T KOG1539|consen  364 VISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKR  443 (910)
T ss_pred             hhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCcc
Confidence            510       00                     0                          0000           0122 


Q ss_pred             -----cceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe---ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy226          191 -----HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       191 -----~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~  262 (406)
                           ..+++++.++.|++.+.|+..|+|-+|++.+|....++   ..|..+|+.++.+.-++.+++++.+|.+.+||+.
T Consensus       444 ~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~  523 (910)
T KOG1539|consen  444 FKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFK  523 (910)
T ss_pred             ccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecC
Confidence                 46889999999999999999999999999999888888   5899999999999999999999999999999998


Q ss_pred             CccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEE
Q psy226          263 TKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTF  342 (406)
Q Consensus       263 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~  342 (406)
                      +...+..+.- ..++.++.++-                  ....++.+..|-.|+++|..+.+.++.|.||.+.|++++|
T Consensus       524 ~k~l~~~l~l-~~~~~~iv~hr------------------~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~F  584 (910)
T KOG1539|consen  524 KKVLKKSLRL-GSSITGIVYHR------------------VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTF  584 (910)
T ss_pred             Ccceeeeecc-CCCcceeeeee------------------hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEe
Confidence            8775555432 23344444332                  2346888899999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCC-CeEEEee
Q psy226          343 HPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVD-KTVKVWE  404 (406)
Q Consensus       343 s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~D-g~v~iw~  404 (406)
                      ||||++|++++.|++||+||+.++.++..+.. ..+++++.|+|+|.+|||...| .-|.+|-
T Consensus       585 S~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  585 SPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CCCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            99999999999999999999999999887754 4578999999999999999999 5699995

>KOG0650|consensus

Probab=99.96  E-value=4.7e-27  Score=213.53  Aligned_cols=284  Identities=20%  Similarity=0.359  Sum_probs=227.3

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCC--EEEEEeCCCcEEEEe
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK--LLVSCSADMSLKLWD  176 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~--~l~sgs~d~~i~vwd  176 (406)
                      .+.+.||.+.|.||..+|.|.+||+|+.||+|+||.+.||++++++. ..+.|.||+|+|.+.  .||++-.+ .+.|-+
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn  470 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN  470 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence            45678999999999999999999999999999999999999988775 345899999999775  34444333 244433


Q ss_pred             C---------------------------------CC----CeEEEEEecCCcceEEEEEecCCCEEEEEeCC---CcEEE
Q psy226          177 M---------------------------------ST----YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD---KTIKM  216 (406)
Q Consensus       177 ~---------------------------------~~----~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d---~~i~i  216 (406)
                      .                                 ..    ..-++....|...|..+.|+..|+||++...+   ..|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            2                                 10    00123344578899999999999999987654   46889


Q ss_pred             EEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccC
Q psy226          217 WEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAG  296 (406)
Q Consensus       217 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  296 (406)
                      +++.......-|.-..+.|.++.|+|...+|+.++. ..|++||+.....+..+.....-|.+++.+|            
T Consensus       551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp------------  617 (733)
T KOG0650|consen  551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP------------  617 (733)
T ss_pred             EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC------------
Confidence            998776655555555667899999999888887764 5899999988777777766667788888777            


Q ss_pred             CCCCCCCCCEEEEEeCCCcEEEEECCCC-eEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC------CC---
Q psy226          297 RPPGQGGGPYLATGSRDKTIKLWDVGSG-SLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA------NK---  366 (406)
Q Consensus       297 ~~~~~~~~~~l~s~~~d~~i~lwd~~~~-~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~------~~---  366 (406)
                            +|.-|+.|+.|+.+..+|+.-. ++..++..|...+++|+|++.-.++++|++||++.|+.-.      ..   
T Consensus       618 ------~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli  691 (733)
T KOG0650|consen  618 ------NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLI  691 (733)
T ss_pred             ------CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCce
Confidence                  4777999999999999999643 5667888899999999999999999999999999998522      11   


Q ss_pred             ccceeeccccce----EEEEEEeCCCCEEEEeeCCCeEEEe
Q psy226          367 RNMKTLEAHSHF----VTSLDFHRAHPYVVTGSVDKTVKVW  403 (406)
Q Consensus       367 ~~~~~l~~h~~~----v~~l~~~~~~~~l~sgs~Dg~v~iw  403 (406)
                      -.++.|.+|...    |.++.|||...+|.|+++||+|++|
T Consensus       692 VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  692 VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             EeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            246778888765    8899999999999999999999999

>KOG0267|consensus

Probab=99.96  E-value=7.2e-30  Score=236.33  Aligned_cols=237  Identities=28%  Similarity=0.529  Sum_probs=218.7

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~  181 (406)
                      +..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.+|.|+++..+|+.|+.+|+|++||++..+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            45688999999987788999999999999999887766667789999999999999999999999999999999999999


Q ss_pred             EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy226          182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSL  261 (406)
Q Consensus       182 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~  261 (406)
                      .++++.||..++.++.|+|-+.+.++|+.|..+++||++...|.+.+.+|..-+..+.|+|+|+++++|+.|.+++|||+
T Consensus       104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~  183 (825)
T KOG0267|consen  104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL  183 (825)
T ss_pred             hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             CCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEE
Q psy226          262 ATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT  341 (406)
Q Consensus       262 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~  341 (406)
                      ..++...++..|+..+.++.|+|.                  .-.+++|+.|++|++||+++...+-........|.+++
T Consensus       184 ~agk~~~ef~~~e~~v~sle~hp~------------------e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~  245 (825)
T KOG0267|consen  184 TAGKLSKEFKSHEGKVQSLEFHPL------------------EVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLA  245 (825)
T ss_pred             cccccccccccccccccccccCch------------------hhhhccCCCCceeeeeccceeEEeeccCCccCCceeee
Confidence            999999999999999999998873                  44688999999999999998888877776778899999


Q ss_pred             EcCCCCEEEEEeCCC
Q psy226          342 FHPGGKYLVSCGDDK  356 (406)
Q Consensus       342 ~s~~g~~l~sgs~d~  356 (406)
                      |+|+|..+++|....
T Consensus       246 fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  246 FNPDGKIVLSGEQIS  260 (825)
T ss_pred             ecCCceeeecCchhh
Confidence            999999999887653

>KOG2055|consensus

Probab=99.96  E-value=1.9e-27  Score=210.03  Aligned_cols=283  Identities=18%  Similarity=0.281  Sum_probs=227.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--cEEEEecccccCeeeEEECCCCC-EEEEEeCCCcEEEEeCCCCeE
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETG--EYERALHGHLDSVQDIAFDQSGK-LLVSCSADMSLKLWDMSTYQC  182 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~--~~~~~~~~h~~~V~~l~~~~~g~-~l~sgs~d~~i~vwd~~~~~~  182 (406)
                      .++|++|.|||..++|.+|+.||+++||.+...  ..++.++-..-+|.+..|.|+|. .+++++.-.....||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            468999999999999999999999999987643  34555655667999999999998 899999999999999987654


Q ss_pred             E--EEEecCC-cceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Q psy226          183 L--KTMQGHD-HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW  259 (406)
Q Consensus       183 ~--~~~~~h~-~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vw  259 (406)
                      .  ..+.++. ..+.....+|++++|+..+..|.|.+.-..++..+.+++ -.+.|..++|+.+++.|++++.+|.|.+|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            3  2334443 356677889999999999999999999999998887775 34668999999999999999999999999


Q ss_pred             eCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC------CCeEEEEEeCC
Q psy226          260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG------SGSLLFTLIGH  333 (406)
Q Consensus       260 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~------~~~~~~~~~~h  333 (406)
                      |++....+..+.. .+.|....+.+.                .++.|||+|+..|.|-|||..      +.+++.++..-
T Consensus       372 nl~~~~~~~rf~D-~G~v~gts~~~S----------------~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL  434 (514)
T KOG2055|consen  372 NLRQNSCLHRFVD-DGSVHGTSLCIS----------------LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL  434 (514)
T ss_pred             ecCCcceEEEEee-cCccceeeeeec----------------CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh
Confidence            9998877666543 223333333221                257799999999999999964      35677777777


Q ss_pred             CcCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCccceee---ccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          334 DNWVRGVTFHPGGKYLVSCGD--DKTLRVWDTANKRNMKTL---EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       334 ~~~v~~l~~s~~g~~l~sgs~--d~~i~vwd~~~~~~~~~l---~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ...|+++.|+|+++.|+.+|.  +..+|+-.+.+......+   ...-+.|+||+|+|.+.+||.|-.+|.|.+|.+.
T Consensus       435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            788999999999999988774  567888877665544444   2334569999999999999999999999999863

>KOG0647|consensus

Probab=99.96  E-value=4.8e-27  Score=197.24  Aligned_cols=238  Identities=23%  Similarity=0.327  Sum_probs=189.2

Q ss_pred             ccccCeeeEEECC-CCCEEEEEeCCCcEEEEeCCC-CeEE-EEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q psy226          146 GHLDSVQDIAFDQ-SGKLLVSCSADMSLKLWDMST-YQCL-KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG  222 (406)
Q Consensus       146 ~h~~~V~~l~~~~-~g~~l~sgs~d~~i~vwd~~~-~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~  222 (406)
                      ...+.|.+|+|+| ...+++.||.|++||+|+++. +... +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            3567899999999 455667899999999999975 3322 445678999999999999999999999999999999999


Q ss_pred             eEEEEeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCC
Q psy226          223 YCVKTLTGHREWVRQIKVSPDGT--LLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPG  300 (406)
Q Consensus       223 ~~~~~~~~~~~~v~~l~~~~~~~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  300 (406)
                       ....+..|..+|.++.|-+...  .|++||.|++|+.||++...++..+.-.+ .++++..                  
T Consensus       105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv------------------  164 (347)
T KOG0647|consen  105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV------------------  164 (347)
T ss_pred             -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc------------------
Confidence             4567788999999999987665  89999999999999999888777665332 2333321                  


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-C-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ccceeecccc
Q psy226          301 QGGGPYLATGSRDKTIKLWDVGSGSLLFTLI-G-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK--RNMKTLEAHS  376 (406)
Q Consensus       301 ~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~-~-h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~--~~~~~l~~h~  376 (406)
                        ..+.++++..++.|.+|+++++...+... . -.-.+++|+..++.+..+.||-.|.+-|..+..+  +.--+++.|.
T Consensus       165 --~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR  242 (347)
T KOG0647|consen  165 --LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHR  242 (347)
T ss_pred             --cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEec
Confidence              23478899999999999998764432211 1 1234889999898888899999999999988775  2233455564


Q ss_pred             c---------eEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          377 H---------FVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       377 ~---------~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .         .|++++|||....|+|+|.||+..+||-
T Consensus       243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDK  280 (347)
T ss_pred             cCCCCCCceEEecceEeecccceEEEecCCceEEEecc
Confidence            2         4889999999999999999999999983

>KOG0772|consensus

Probab=99.96  E-value=1.4e-27  Score=213.39  Aligned_cols=248  Identities=25%  Similarity=0.385  Sum_probs=191.2

Q ss_pred             EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe----EEEEE-ecCCcceEEEEEecCCCEEEEEeCCCcE
Q psy226          140 YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ----CLKTM-QGHDHNVTGVAFLPNSDFVLSASRDKTI  214 (406)
Q Consensus       140 ~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~----~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i  214 (406)
                      .+..+++|+..|.++++.|.|.+|++||.|.+|++||+....    ..+.+ ....+.|.++.|+++|+.|++.+.....
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            355678899999999999999999999999999999987432    12222 2345789999999999999999999999


Q ss_pred             EEEEcCCCeEEEE------------eecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCCccc-eeEEe-----cCCc
Q psy226          215 KMWEVATGYCVKT------------LTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKET-KAELR-----GHDH  275 (406)
Q Consensus       215 ~iwd~~~~~~~~~------------~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~-~~~~~-----~~~~  275 (406)
                      +++|-.....+..            -+||...+++.+|+|.. +.|++|+.||++|+||+..... ...++     +..-
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            9999654333222            25899999999999965 6799999999999999976433 33332     2334


Q ss_pred             eEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC--eEE-EEEeCCCc--CEEEEEEcCCCCEEE
Q psy226          276 TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG--SLL-FTLIGHDN--WVRGVTFHPGGKYLV  350 (406)
Q Consensus       276 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~--~~~-~~~~~h~~--~v~~l~~s~~g~~l~  350 (406)
                      ++.+++|+|                  +++.+|+|+.||.|.+|+.++.  ++. ..-.+|..  .|++|+||++|++|+
T Consensus       319 ~~tsC~~nr------------------dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  319 PVTSCAWNR------------------DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL  380 (641)
T ss_pred             CceeeecCC------------------CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence            677888887                  4778999999999999997542  222 23346766  899999999999999


Q ss_pred             EEeCCCeEEEEeCCCC-ccceeeccc--cceEEEEEEeCCCCEEEEee------CCCeEEEeec
Q psy226          351 SCGDDKTLRVWDTANK-RNMKTLEAH--SHFVTSLDFHRAHPYVVTGS------VDKTVKVWEC  405 (406)
Q Consensus       351 sgs~d~~i~vwd~~~~-~~~~~l~~h--~~~v~~l~~~~~~~~l~sgs------~Dg~v~iw~~  405 (406)
                      |=|.|+++++||++.. +++.+..+-  .-.-+.++|+|+.++|++|.      .-|++.+||-
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~  444 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR  444 (641)
T ss_pred             hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence            9999999999999864 445444332  22357889999999999985      3466777763

>KOG0269|consensus

Probab=99.96  E-value=5.5e-28  Score=225.55  Aligned_cols=275  Identities=23%  Similarity=0.480  Sum_probs=220.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE----Eecc---cccCeeeEEECC-CCCEEEEEeCCCcEEEEeCC
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER----ALHG---HLDSVQDIAFDQ-SGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~----~~~~---h~~~V~~l~~~~-~g~~l~sgs~d~~i~vwd~~  178 (406)
                      .+.++|..+++-..++.++. ..++||.++......    ..+.   -.-.+.+|.|+. +.++|||++..|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            45667788899888888775 467888766533211    1111   112456678874 45799999999999999998


Q ss_pred             C---CeEEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC-CCCEEEEEeCC
Q psy226          179 T---YQCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLASCSND  253 (406)
Q Consensus       179 ~---~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d  253 (406)
                      .   .+.+..+..|+..+.++.|++.. ++|++||.||+|++||++......++.+....|+.+.|+| .+..|+++...
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence            6   55566788999999999999864 5899999999999999999988899999999999999999 57899999999


Q ss_pred             CeEEEEeCCCcc-ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE--EEEE
Q psy226          254 HTARVWSLATKE-TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL--LFTL  330 (406)
Q Consensus       254 ~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~--~~~~  330 (406)
                      |.+.+||++... ....+..|.++|.|+.|+|                  ++.+||+|++|+.|+|||..+++.  ..++
T Consensus       199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP------------------nr~~lATGGRDK~vkiWd~t~~~~~~~~tI  260 (839)
T KOG0269|consen  199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP------------------NREWLATGGRDKMVKIWDMTDSRAKPKHTI  260 (839)
T ss_pred             ceEEEeeccCchhHHHHhhcccCceEEEeecC------------------CCceeeecCCCccEEEEeccCCCccceeEE
Confidence            999999998653 4667889999999999999                  477999999999999999976543  2222


Q ss_pred             eCCCcCEEEEEEcCCCCE-EEEEe--CCCeEEEEeCCCC-ccceeeccccceEEEEEEeC-CCCEEEEeeCCCeEE
Q psy226          331 IGHDNWVRGVTFHPGGKY-LVSCG--DDKTLRVWDTANK-RNMKTLEAHSHFVTSLDFHR-AHPYVVTGSVDKTVK  401 (406)
Q Consensus       331 ~~h~~~v~~l~~s~~g~~-l~sgs--~d~~i~vwd~~~~-~~~~~l~~h~~~v~~l~~~~-~~~~l~sgs~Dg~v~  401 (406)
                       ....+|.+|.|-|...+ |++++  .|-.|+|||+... -+..++..|...++.++|.. |...|.+++.||+|.
T Consensus       261 -nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  261 -NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             -eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence             23567999999997655 66665  5889999999765 35678899999999999976 445789999999864

>KOG2048|consensus

Probab=99.96  E-value=5e-26  Score=209.74  Aligned_cols=276  Identities=20%  Similarity=0.327  Sum_probs=228.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-EEEEeccccc-CeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE-YERALHGHLD-SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC  182 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~-~~~~~~~h~~-~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~  182 (406)
                      -.++|.++||+...+.||.+-.||.|.+|++..+= ....++++.+ .|.+++|++ |.+|.+.+.+|.|.-||+.+++.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence            35789999999999999999999999999998864 3456777654 799999994 56788889999999999999999


Q ss_pred             EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEE--EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEe
Q psy226          183 LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVK--TLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS  260 (406)
Q Consensus       183 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd  260 (406)
                      +..+......|++++.+|.+..++.|+.||.+...++..+....  .+.-..+.|.+++|+|++..+++|+.||.|++||
T Consensus       103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd  182 (691)
T KOG2048|consen  103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD  182 (691)
T ss_pred             eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence            99998888999999999999999999999988888887776543  2334467899999999999999999999999999


Q ss_pred             CCCccceeEEe-------c-CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy226          261 LATKETKAELR-------G-HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       261 ~~~~~~~~~~~-------~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~  332 (406)
                      ..++.......       . ...-|.++.+-.                   ...+++|...|+|.+||...+.++..+..
T Consensus       183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-------------------d~tI~sgDS~G~V~FWd~~~gTLiqS~~~  243 (691)
T KOG2048|consen  183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-------------------DSTIASGDSAGTVTFWDSIFGTLIQSHSC  243 (691)
T ss_pred             cCCCceEEEeeecccccccCCceEEEEEEEee-------------------cCcEEEecCCceEEEEcccCcchhhhhhh
Confidence            98877655211       1 112233444332                   23699999999999999999999999999


Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc----ceeeccccceEEEEEEeCCCCEEEEeeCCCeEEE
Q psy226          333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN----MKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKV  402 (406)
Q Consensus       333 h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~----~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~i  402 (406)
                      |..-|.+++.++++.++++++.|+.|.-+...+...    ......|.+.|.+++..++  .|++||.|.++.+
T Consensus       244 h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  244 HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence            999999999999999999999999998887765532    2233568888999998876  8999999998765

>KOG2106|consensus

Probab=99.96  E-value=2.5e-25  Score=198.68  Aligned_cols=275  Identities=19%  Similarity=0.390  Sum_probs=219.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE---eccc-ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERA---LHGH-LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~---~~~h-~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      -+..|....|||..+-|+....-|.+.+|+.+++.+.++   +..+ ...|.|++|.++|. +++|.++|+|.||+..+.
T Consensus       199 sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~  277 (626)
T KOG2106|consen  199 SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN  277 (626)
T ss_pred             ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc
Confidence            345678899999876555555568999999999877654   3332 35799999999987 669999999999999888


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC------------eE------------------------
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG------------YC------------------------  224 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~------------~~------------------------  224 (406)
                      +..+....|++.|.+++...+|.+ ++|+.|+.|..||-.-.            ..                        
T Consensus       278 ~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~  356 (626)
T KOG2106|consen  278 RISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL  356 (626)
T ss_pred             eEEeEeeecCCceEEEEEecCccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence            887777799999999999988865 55999999999983100            00                        


Q ss_pred             ----EEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCC
Q psy226          225 ----VKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPG  300 (406)
Q Consensus       225 ----~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  300 (406)
                          .....+|.+....++.+|+.+++++|+.|+.+++|+  ..++ .--+....++.|+.|.|.               
T Consensus       357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~-~wt~~~~d~~~~~~fhps---------------  418 (626)
T KOG2106|consen  357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL-EWTKIIEDPAECADFHPS---------------  418 (626)
T ss_pred             cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce-eEEEEecCceeEeeccCc---------------
Confidence                012246778888999999999999999999999999  2222 222334677889999883               


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ccceee-ccccce
Q psy226          301 QGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK-RNMKTL-EAHSHF  378 (406)
Q Consensus       301 ~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~-~~~~~l-~~h~~~  378 (406)
                         | .++.|+..|...+.|..+...+..-.. ..++++++|+|+|.+||.|+.|+.|+||-+... ..+... ..|..+
T Consensus       419 ---g-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~  493 (626)
T KOG2106|consen  419 ---G-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSP  493 (626)
T ss_pred             ---c-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCce
Confidence               4 899999999999999998665544444 888999999999999999999999999988643 333333 334579


Q ss_pred             EEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          379 VTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       379 v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      |+.|+|++|+++|.+-|.|-.|..|.
T Consensus       494 ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  494 ITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             eEEeeecCCCceEEeccCceEEEEEc
Confidence            99999999999999999999999994

>KOG4283|consensus

Probab=99.96  E-value=3.4e-26  Score=191.47  Aligned_cols=282  Identities=22%  Similarity=0.369  Sum_probs=220.0

Q ss_pred             eccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc------EE----E-----EecccccCeeeEEECC-CCCEEE
Q psy226          102 LSGHRSPVIKVIFHPV-FSLMASCSEDATIRLWDYETGE------YE----R-----ALHGHLDSVQDIAFDQ-SGKLLV  164 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~-~~~latgs~dg~v~vwd~~~~~------~~----~-----~~~~h~~~V~~l~~~~-~g~~l~  164 (406)
                      ...|.+.|+++...|. ++++++|+.||.|.|||+++..      +.    .     .-.+|.-.|.++.|-| |...+.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            3469999999999885 7899999999999999987643      00    0     1136778899999988 456788


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCC---CEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEEC
Q psy226          165 SCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS---DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVS  241 (406)
Q Consensus       165 sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  241 (406)
                      ++|-|.+++|||..+.+....+. .++.|.+-+++|-.   .++++|.+|-.|++-|+.+|.+.+++.||++.|.++.|+
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS  197 (397)
T ss_pred             cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence            89999999999999988776665 46678888888843   367788889999999999999999999999999999999


Q ss_pred             CCCCE-EEEEeCCCeEEEEeCCCc-cceeEEe--------------cCCceEEEEEeCCCCCccccccccCCCCCCCCCC
Q psy226          242 PDGTL-LASCSNDHTARVWSLATK-ETKAELR--------------GHDHTVECVAWAPGVASESISEAAGRPPGQGGGP  305 (406)
Q Consensus       242 ~~~~~-l~s~~~d~~v~vwd~~~~-~~~~~~~--------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (406)
                      |...+ |++|+.||.|++||++.. .+...+.              .|...+..++|..                  .+.
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS------------------d~~  259 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS------------------DAR  259 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc------------------cch
Confidence            98765 689999999999999764 2333332              3455566666654                  578


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEe---CCCcC----EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccce
Q psy226          306 YLATGSRDKTIKLWDVGSGSLLFTLI---GHDNW----VRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF  378 (406)
Q Consensus       306 ~l~s~~~d~~i~lwd~~~~~~~~~~~---~h~~~----v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~  378 (406)
                      ++++++.|..+++|+..+|+....-.   .|...    +. +. +-+...++---.|+.+.++++-.+..+..+..|-..
T Consensus       260 ~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~  337 (397)
T KOG4283|consen  260 YLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKR  337 (397)
T ss_pred             hhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccce
Confidence            99999999999999998876432111   12111    11 22 222233333344589999999999999999999889


Q ss_pred             EEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          379 VTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       379 v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      |.|.++.|+=+.+.+|+.|+.|..|-
T Consensus       338 i~c~~~~~~fq~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  338 INCAAYRPDFEQCFTGDMNGNIYMWS  363 (397)
T ss_pred             eeEEeecCchhhhhccccCCcccccc
Confidence            99999999999999999999999885

>KOG1063|consensus

Probab=99.95  E-value=3.5e-26  Score=211.12  Aligned_cols=304  Identities=21%  Similarity=0.352  Sum_probs=222.9

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--CcEEEEe-----cccccCeeeEEECCCCCEEEEEeCCCcEEE
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYET--GEYERAL-----HGHLDSVQDIAFDQSGKLLVSCSADMSLKL  174 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~--~~~~~~~-----~~h~~~V~~l~~~~~g~~l~sgs~d~~i~v  174 (406)
                      +.||.+-|+++.|+|.+..|.++|.|.++.+|.-.+  |-.+..+     .|......+..|+|+++.+++-+.-|..++
T Consensus       263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL  342 (764)
T ss_pred             hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence            569999999999999999999999999999997544  3333222     244556888999999999999999999999


Q ss_pred             EeCCC---CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC----eEEEEeecCCccEEEEEECCCCCEE
Q psy226          175 WDMST---YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG----YCVKTLTGHREWVRQIKVSPDGTLL  247 (406)
Q Consensus       175 wd~~~---~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l  247 (406)
                      |....   ........||.+.|.+++|+|.|.+|++.|.|.|-|++---..    ..+..-+-|...++|++|-+....|
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F  422 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF  422 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence            97322   2334566899999999999999999999999999999754311    1233334577778999998877789


Q ss_pred             EEEeCCCeEEEEeCCCccc--ee-----EEec-----CCceEEEEE--------------------------eCCCCCc-
Q psy226          248 ASCSNDHTARVWSLATKET--KA-----ELRG-----HDHTVECVA--------------------------WAPGVAS-  288 (406)
Q Consensus       248 ~s~~~d~~v~vwd~~~~~~--~~-----~~~~-----~~~~v~~~~--------------------------~~~~~~~-  288 (406)
                      ++|...+.+|+|+....-.  ..     ...+     ....|..+.                          ..|.... 
T Consensus       423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e  502 (764)
T KOG1063|consen  423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE  502 (764)
T ss_pred             eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence            9999999999998642100  00     0000     000010000                          0000000 


Q ss_pred             cccc-------------cccCCC------CCCCCCCEEEEEeCCC-----cEEEEECCCCeEEEEEeCCCcCEEEEEEcC
Q psy226          289 ESIS-------------EAAGRP------PGQGGGPYLATGSRDK-----TIKLWDVGSGSLLFTLIGHDNWVRGVTFHP  344 (406)
Q Consensus       289 ~~~~-------------~~~~~~------~~~~~~~~l~s~~~d~-----~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~  344 (406)
                      +.+.             ...++-      ...+.++++|+++...     .|++|+..+-..+..+.+|+-.|+.++|||
T Consensus       503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp  582 (764)
T KOG1063|consen  503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP  582 (764)
T ss_pred             CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence            0000             000000      0123578888888654     589999998888888999999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----ccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          345 GGKYLVSCGDDKTLRVWDTANK----RNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       345 ~g~~l~sgs~d~~i~vwd~~~~----~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ||+||++.|.|+++.+|.....    .....++.|+..|.+..|+|++.++||+|.|.+|++|..
T Consensus       583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence            9999999999999999986432    234457889999999999999999999999999999974

>KOG2445|consensus

Probab=99.95  E-value=1.1e-25  Score=189.46  Aligned_cols=257  Identities=23%  Similarity=0.427  Sum_probs=200.4

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--c--EEEEecccccCeeeEEECC--CCCEEEEEeCCCcEEEEe
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG--E--YERALHGHLDSVQDIAFDQ--SGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~--~--~~~~~~~h~~~V~~l~~~~--~g~~l~sgs~d~~i~vwd  176 (406)
                      .+|.+-|+|+.|.+.|+.+|||+.|++|+|||....  .  .....+.|.+.|..+.|.+  -|+.+|++|.|++++||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            589999999999999999999999999999996443  2  3445678999999999965  489999999999999996


Q ss_pred             CC---------CCeEEEEEecCCcceEEEEEecC--CCEEEEEeCCCcEEEEEcCCCeEE------EEee-------cCC
Q psy226          177 MS---------TYQCLKTMQGHDHNVTGVAFLPN--SDFVLSASRDKTIKMWEVATGYCV------KTLT-------GHR  232 (406)
Q Consensus       177 ~~---------~~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~iwd~~~~~~~------~~~~-------~~~  232 (406)
                      -.         ......++......|+.++|.|.  |-.|++++.||++|||+......+      ..++       .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            41         12335567777889999999995  558999999999999987543221      1121       355


Q ss_pred             ccEEEEEECCC---CCEEEEEeCC-----CeEEEEeCCCc----cceeEEecCCceEEEEEeCCCCCccccccccCCCCC
Q psy226          233 EWVRQIKVSPD---GTLLASCSND-----HTARVWSLATK----ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPG  300 (406)
Q Consensus       233 ~~v~~l~~~~~---~~~l~s~~~d-----~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  300 (406)
                      ....|+.|+|.   ..+||.|+.+     +.+.||.....    ..+.++.+|..+|+.++|.|....            
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr------------  237 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR------------  237 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC------------
Confidence            66788999974   4678888776     57888876443    345678899999999999996432            


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCC--------------------eEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy226          301 QGGGPYLATGSRDKTIKLWDVGSG--------------------SLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRV  360 (406)
Q Consensus       301 ~~~~~~l~s~~~d~~i~lwd~~~~--------------------~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~v  360 (406)
                        .-..||+++.|| |+||++...                    +.+..+.+|.+.|..+.|+-.|..|+|.|+||.||+
T Consensus       238 --~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRL  314 (361)
T KOG2445|consen  238 --SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRL  314 (361)
T ss_pred             --ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeee
Confidence              235799999999 999998631                    134557789999999999999999999999999999


Q ss_pred             EeCCC---Cccceeecc
Q psy226          361 WDTAN---KRNMKTLEA  374 (406)
Q Consensus       361 wd~~~---~~~~~~l~~  374 (406)
                      |...-   .++...++.
T Consensus       315 Wkany~n~~kC~sv~~~  331 (361)
T KOG2445|consen  315 WKANYNNLWKCTSVLKA  331 (361)
T ss_pred             hhhhhhhhheeeeEEec
Confidence            97542   334444443

>KOG0269|consensus

Probab=99.95  E-value=1.2e-27  Score=223.27  Aligned_cols=240  Identities=24%  Similarity=0.432  Sum_probs=198.0

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCcEEEEEcCC---CcEEEEecccccCeeeEEECCC-CCEEEEEeCCCcEEEEeCCCCeEE
Q psy226          109 VIKVIFHP-VFSLMASCSEDATIRLWDYET---GEYERALHGHLDSVQDIAFDQS-GKLLVSCSADMSLKLWDMSTYQCL  183 (406)
Q Consensus       109 V~~v~~~p-~~~~latgs~dg~v~vwd~~~---~~~~~~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~vwd~~~~~~~  183 (406)
                      +..|+|+. +.++|||++..|.|.+||+..   .+....+..|...|++++|++. ..+|++||.||+|++||+...+-.
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence            44567773 357999999999999999987   4455678899999999999885 468999999999999999988878


Q ss_pred             EEEecCCcceEEEEEecC-CCEEEEEeCCCcEEEEEcCCC-eEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy226          184 KTMQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSL  261 (406)
Q Consensus       184 ~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~  261 (406)
                      .++.+....|..++|+|. +++++++...|.+++||++.. ++...+..|.++|.++.|+|++.+||+||.|+.|+|||+
T Consensus       170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~  249 (839)
T KOG0269|consen  170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM  249 (839)
T ss_pred             ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence            888888899999999994 568899999999999999864 577888999999999999999999999999999999999


Q ss_pred             CCccceeEEe-cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe--CCCcEEEEECCCC-eEEEEEeCCCcCE
Q psy226          262 ATKETKAELR-GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS--RDKTIKLWDVGSG-SLLFTLIGHDNWV  337 (406)
Q Consensus       262 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~lwd~~~~-~~~~~~~~h~~~v  337 (406)
                      .+.+...... ....++.+++|-|..                 ...|++++  .|-.|+|||++-. -+..++..|.+.+
T Consensus       250 t~~~~~~~~tInTiapv~rVkWRP~~-----------------~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~v  312 (839)
T KOG0269|consen  250 TDSRAKPKHTINTIAPVGRVKWRPAR-----------------SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSV  312 (839)
T ss_pred             cCCCccceeEEeecceeeeeeeccCc-----------------cchhhhhhccccceEEEEeeccccccceeeeccCccc
Confidence            8655433322 234789999999963                 24577766  4678999999754 4556889999999


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q psy226          338 RGVTFHP-GGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       338 ~~l~~s~-~g~~l~sgs~d~~i~vwd~~~  365 (406)
                      +.++|.. +...+.+++.||+|..-.+++
T Consensus       313 t~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  313 TGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             cceeccCCCceeeEeecCccHHHHhhhhc
Confidence            9999965 445778999999887654443

>KOG4328|consensus

Probab=99.95  E-value=3.6e-26  Score=201.80  Aligned_cols=284  Identities=21%  Similarity=0.340  Sum_probs=219.1

Q ss_pred             eccCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCC----cEEEEecccccCeeeEEECCCC-CEEEEEeCCCcEEE
Q psy226          102 LSGHRSPVIKVIFHPVFS--LMASCSEDATIRLWDYETG----EYERALHGHLDSVQDIAFDQSG-KLLVSCSADMSLKL  174 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~--~latgs~dg~v~vwd~~~~----~~~~~~~~h~~~V~~l~~~~~g-~~l~sgs~d~~i~v  174 (406)
                      ..-|..+|++++|||..+  ++|+|+.-|.|-+||+.+.    .-...+..|..+|.++.|+|.. ..+++.|.||+|++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            345889999999999864  8999999999999999532    2345677899999999999964 58999999999999


Q ss_pred             EeCCCCeE--EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeE-EEEeecCCccEEEEEECCCC-CEEEEE
Q psy226          175 WDMSTYQC--LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYC-VKTLTGHREWVRQIKVSPDG-TLLASC  250 (406)
Q Consensus       175 wd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~-~~l~s~  250 (406)
                      -|+++...  +..+......+.++.|+.+...++.+..=|...+||++++.. ...+.-|...|+.++++|.. .+||+|
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~  341 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA  341 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec
Confidence            99986532  333333455677888888888888888878999999998654 55667788899999999954 678999


Q ss_pred             eCCCeEEEEeCCCccce----eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC----
Q psy226          251 SNDHTARVWSLATKETK----AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG----  322 (406)
Q Consensus       251 ~~d~~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~----  322 (406)
                      |.|++++|||++.....    .....|..+|.+..|+|.                 +|. |++.+.|..|||||..    
T Consensus       342 s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs-----------------~gt-l~TT~~D~~IRv~dss~~sa  403 (498)
T KOG4328|consen  342 SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPS-----------------GGT-LLTTCQDNEIRVFDSSCISA  403 (498)
T ss_pred             ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCC-----------------CCc-eEeeccCCceEEeecccccc
Confidence            99999999999864332    345579999999999995                 344 9999999999999984    


Q ss_pred             CCeEEEEEeCCC----cCEE--EEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc-cceEEE-EEEeCCCC-EEEE
Q psy226          323 SGSLLFTLIGHD----NWVR--GVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH-SHFVTS-LDFHRAHP-YVVT  393 (406)
Q Consensus       323 ~~~~~~~~~~h~----~~v~--~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h-~~~v~~-l~~~~~~~-~l~s  393 (406)
                      ...+..+ ..|.    .|++  .-.|.|+..++++|-.-..|-|+|-..++.+..+..- ...|.+ ..|||.+. ++|-
T Consensus       404 ~~~p~~~-I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG  482 (498)
T KOG4328|consen  404 KDEPLGT-IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAG  482 (498)
T ss_pred             cCCccce-eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceecc
Confidence            2222222 2232    2333  3489999999999999999999999888877766432 223444 47999998 4555


Q ss_pred             eeCCCeEEEee
Q psy226          394 GSVDKTVKVWE  404 (406)
Q Consensus       394 gs~Dg~v~iw~  404 (406)
                      |+..|.|.||-
T Consensus       483 ~~s~Gki~vft  493 (498)
T KOG4328|consen  483 GNSSGKIYVFT  493 (498)
T ss_pred             CCccceEEEEe
Confidence            56778898885

>KOG1274|consensus

Probab=99.95  E-value=7.1e-26  Score=215.29  Aligned_cols=242  Identities=24%  Similarity=0.417  Sum_probs=207.5

Q ss_pred             cccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe
Q psy226          145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY-QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY  223 (406)
Q Consensus       145 ~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~  223 (406)
                      .+|+..-+.|+|.|+|.+|++++.||.|++|+...- ....++..+...|.+++.  .++++++|+.+++|.+|.+..+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence            468899999999999999999999999999986543 223333336667777665  45699999999999999998887


Q ss_pred             EEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCC
Q psy226          224 CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGG  303 (406)
Q Consensus       224 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (406)
                      .-..+....-+++.++++-+|+++|.||.|-.|++.++........+++|+.+|.++.|.|                  .
T Consensus        88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p------------------~  149 (933)
T KOG1274|consen   88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP------------------K  149 (933)
T ss_pred             ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC------------------C
Confidence            6656666677899999999999999999999999999999999999999999999999998                  5


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEeCC--------CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec--
Q psy226          304 GPYLATGSRDKTIKLWDVGSGSLLFTLIGH--------DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE--  373 (406)
Q Consensus       304 ~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h--------~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~--  373 (406)
                      +.+||+.+-||.|++||+.++.+.+++.+-        ...+..++|+|+|..++..+.|+.|++|+..+......|.  
T Consensus       150 ~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~  229 (933)
T KOG1274|consen  150 GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK  229 (933)
T ss_pred             CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc
Confidence            889999999999999999998877766542        3456789999998888888899999999999887766663  


Q ss_pred             cccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          374 AHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       374 ~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      .++..+.+++|+|.|.|||+++.||.|.|||..
T Consensus       230 ~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  230 LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             ccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            345559999999999999999999999999963

>KOG1036|consensus

Probab=99.95  E-value=1e-25  Score=189.93  Aligned_cols=235  Identities=22%  Similarity=0.312  Sum_probs=190.0

Q ss_pred             cccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEE
Q psy226          147 HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVK  226 (406)
Q Consensus       147 h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~  226 (406)
                      ..+.|.+|.|+|.+..|++++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++.. .
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~   88 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-D   88 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-e
Confidence            3578999999999999999999999999999876544343 5899999999986 56799999999999999998764 4


Q ss_pred             EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCE
Q psy226          227 TLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPY  306 (406)
Q Consensus       227 ~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (406)
                      .+..|...|+++..++....+++||.|++|++||.+.......+.. ...|.++..                    .+..
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--------------------~g~~  147 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--------------------SGNR  147 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--------------------cCCE
Confidence            4567999999999999889999999999999999987444433322 235666654                    3668


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEe--CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ccceeeccccc---
Q psy226          307 LATGSRDKTIKLWDVGSGSLLFTLI--GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK----RNMKTLEAHSH---  377 (406)
Q Consensus       307 l~s~~~d~~i~lwd~~~~~~~~~~~--~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~----~~~~~l~~h~~---  377 (406)
                      |++|+.|..|.+||+++.....+..  .-.-.+++|++-|++.-.+++|-||+|.+=.++..    +....++.|..   
T Consensus       148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~  227 (323)
T KOG1036|consen  148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK  227 (323)
T ss_pred             EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC
Confidence            9999999999999999866544322  12335899999999888999999999998666554    23345566633   


Q ss_pred             ------eEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          378 ------FVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       378 ------~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                            +|++++|||-...||||+.||.|.+||+
T Consensus       228 ~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~  261 (323)
T KOG1036|consen  228 DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL  261 (323)
T ss_pred             CceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence                  6999999999999999999999999996

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=2.5e-24  Score=196.02  Aligned_cols=263  Identities=18%  Similarity=0.192  Sum_probs=196.2

Q ss_pred             EEeccCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEE-eCCCcEEEEeC
Q psy226          100 FALSGHRSPVIKVIFHPVFSLM-ASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSC-SADMSLKLWDM  177 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~l-atgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sg-s~d~~i~vwd~  177 (406)
                      ..+.+|.. +.+++|+|++..+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.|+.+++||+
T Consensus        25 ~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~  102 (300)
T TIGR03866        25 RTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDI  102 (300)
T ss_pred             EEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence            34454544 5679999999876 6778899999999999988776665443 5678999999977654 56899999999


Q ss_pred             CCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCC-cEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEE-EeCCCe
Q psy226          178 STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK-TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLAS-CSNDHT  255 (406)
Q Consensus       178 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~~~d~~  255 (406)
                      .+.+.+..+.. ...+.+++|+|++.++++++.++ .+.+||..++.....+.. ......++|+|+|++++. +..++.
T Consensus       103 ~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~  180 (300)
T TIGR03866       103 ETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGT  180 (300)
T ss_pred             CCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCE
Confidence            98877766653 33468899999999999988775 467789988876655432 234577899999998854 456999


Q ss_pred             EEEEeCCCccceeEEecCCc-------eEEEEEeCCCCCccccccccCCCCCCCCCCEE-EEEeCCCcEEEEECCCCeEE
Q psy226          256 ARVWSLATKETKAELRGHDH-------TVECVAWAPGVASESISEAAGRPPGQGGGPYL-ATGSRDKTIKLWDVGSGSLL  327 (406)
Q Consensus       256 v~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~lwd~~~~~~~  327 (406)
                      |++||+.+.+....+..+..       ....+.|+|                  ++.++ ++.+.++.|.+||+.+++.+
T Consensus       181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~------------------dg~~~~~~~~~~~~i~v~d~~~~~~~  242 (300)
T TIGR03866       181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK------------------DGKTAFVALGPANRVAVVDAKTYEVL  242 (300)
T ss_pred             EEEEEcCcceeeeeeeecccccccccCCccceEECC------------------CCCEEEEEcCCCCeEEEEECCCCcEE
Confidence            99999988766554432211       112344444                  35554 34455678999999988877


Q ss_pred             EEEeCCCcCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCccceeeccccceEEEEEEeC
Q psy226          328 FTLIGHDNWVRGVTFHPGGKYLVSC-GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR  386 (406)
Q Consensus       328 ~~~~~h~~~v~~l~~s~~g~~l~sg-s~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~  386 (406)
                      ..+. +...+.+++|+|+|++|+++ +.++.|++||+.+++.+.++... ...+.++++|
T Consensus       243 ~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       243 DYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            6543 34578899999999999886 46899999999999998888754 4558888865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1408|consensus

Probab=99.95  E-value=2e-26  Score=213.30  Aligned_cols=242  Identities=26%  Similarity=0.418  Sum_probs=208.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCC---CCEEEEEeCCCcEEEEeCC-CC
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQS---GKLLVSCSADMSLKLWDMS-TY  180 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~---g~~l~sgs~d~~i~vwd~~-~~  180 (406)
                      -...|.+++.+|++.+||+|..-|+++|||+..-++...+..|...|.|+.|+.-   .++|++++.|+.|.|+|+. ++
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence            3456899999999999999999999999999999988899999999999999853   4789999999999999986 56


Q ss_pred             eEEEEEecCCcceEEEEEecCC--CEEEEEeCCCcEEEEEcCC-CeEEEEeecC-----CccEEEEEECCCCCEEEEEeC
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNS--DFVLSASRDKTIKMWEVAT-GYCVKTLTGH-----REWVRQIKVSPDGTLLASCSN  252 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~--~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~-----~~~v~~l~~~~~~~~l~s~~~  252 (406)
                      ..+.++.+|...|+++.|..+|  ..+++++.|+.|.+ +... ......+..|     ...+..++..|..+++++++.
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ  616 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ  616 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence            7788999999999999999877  57899999998754 3322 1111122222     245788999999999999999


Q ss_pred             CCeEEEEeCCCccceeEEec---CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q psy226          253 DHTARVWSLATKETKAELRG---HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFT  329 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~  329 (406)
                      |..|+|||+.+++....+++   |++..-.+...|                  .|.|+++.+.|+++.++|..+|.++.+
T Consensus       617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP------------------SgiY~atScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP------------------SGIYLATSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             ccceEEEeccccceeeeecccccCCCceEEEEECC------------------CccEEEEeecCCceEEEEeccchhhhh
Confidence            99999999999998888875   556666677776                  478999999999999999999999999


Q ss_pred             EeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy226          330 LIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       330 ~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~  365 (406)
                      +.||...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus       679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            999999999999999999999999999999998753

>KOG0321|consensus

Probab=99.95  E-value=7.9e-26  Score=207.06  Aligned_cols=270  Identities=23%  Similarity=0.339  Sum_probs=200.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEE------EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE--EecC
Q psy226          118 FSLMASCSEDATIRLWDYETGEYE------RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKT--MQGH  189 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~------~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~--~~~h  189 (406)
                      ..+||.+.+||.|.++|.....+.      +....|...|.++.|-|....|++++.|.++++||+.+..+...  +.||
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH  143 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH  143 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence            458999999999999998765543      34457999999999999667899999999999999998888766  8899


Q ss_pred             CcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeE-------E--------------------EEeecCCccEEE---E
Q psy226          190 DHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYC-------V--------------------KTLTGHREWVRQ---I  238 (406)
Q Consensus       190 ~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~-------~--------------------~~~~~~~~~v~~---l  238 (406)
                      ...|.+++|.|... .+++|+.||.|.|||++....       .                    ..-..+...|.+   +
T Consensus       144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv  223 (720)
T KOG0321|consen  144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV  223 (720)
T ss_pred             ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence            99999999999664 788999999999999864320       0                    001122233333   4


Q ss_pred             EECCCCCEEEEEeC-CCeEEEEeCCCccceeE------EecCCc-----eEEEEEeCCCCCccccccccCCCCCCCCCCE
Q psy226          239 KVSPDGTLLASCSN-DHTARVWSLATKETKAE------LRGHDH-----TVECVAWAPGVASESISEAAGRPPGQGGGPY  306 (406)
Q Consensus       239 ~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~------~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (406)
                      .+..|..+||+++. |+.|+|||+++......      ...+.+     .+.++..                  +..|.+
T Consensus       224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l------------------DssGt~  285 (720)
T KOG0321|consen  224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL------------------DSSGTY  285 (720)
T ss_pred             EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe------------------cCCCCe
Confidence            45567888999887 99999999987543221      111111     1222221                  124678


Q ss_pred             EEEEeCCCcEEEEECCCC--eEEEEEeCCCcC--EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-cceeeccccceEEE
Q psy226          307 LATGSRDKTIKLWDVGSG--SLLFTLIGHDNW--VRGVTFHPGGKYLVSCGDDKTLRVWDTANKR-NMKTLEAHSHFVTS  381 (406)
Q Consensus       307 l~s~~~d~~i~lwd~~~~--~~~~~~~~h~~~--v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~-~~~~l~~h~~~v~~  381 (406)
                      |++.+.|+.|.+||+.+-  .++..+.++...  -..-..+|++.+|++|+.|...++|.+.+.+ ....+.+|...|++
T Consensus       286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~  365 (720)
T KOG0321|consen  286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTT  365 (720)
T ss_pred             EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEE
Confidence            888888999999999753  345555555332  1122468999999999999999999998764 45566899999999


Q ss_pred             EEEeCCC-CEEEEeeCCCeEEEeec
Q psy226          382 LDFHRAH-PYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       382 l~~~~~~-~~l~sgs~Dg~v~iw~~  405 (406)
                      ++|.|.. .-+|+++.|-++++|++
T Consensus       366 V~w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  366 VRWLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             EeeccccCCCceeeccCcceEEEec
Confidence            9998754 34677799999999986

>KOG2106|consensus

Probab=99.94  E-value=4.8e-24  Score=190.49  Aligned_cols=230  Identities=22%  Similarity=0.364  Sum_probs=189.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe-----
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ-----  181 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~-----  181 (406)
                      .-|.|++|.+++. ++||..+|.|.||+..+.+..+....|.+.|.+++.-.+|.+| +|+.|+.|..||- ..+     
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~-~y~k~r~~  323 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDD-NYRKLRET  323 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccc-cccccccc
Confidence            5699999999876 5799999999999998888888888999999999999999766 4999999999982 111     


Q ss_pred             ------------------------------------EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEE
Q psy226          182 ------------------------------------CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV  225 (406)
Q Consensus       182 ------------------------------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~  225 (406)
                                                          ......+|.+..+.++.+|+.+++++++.|+.+++|+  ..+.+
T Consensus       324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~  401 (626)
T KOG2106|consen  324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE  401 (626)
T ss_pred             cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence                                                0113357888999999999999999999999999999  33333


Q ss_pred             EEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCC
Q psy226          226 KTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGP  305 (406)
Q Consensus       226 ~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (406)
                      .+. --.+++.++.|+|.| .+|.|+..|...+.|..+...+..-.. ..++.++.|+|                  .|.
T Consensus       402 wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp------------------~G~  460 (626)
T KOG2106|consen  402 WTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP------------------DGA  460 (626)
T ss_pred             EEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC------------------CCC
Confidence            332 234678899999999 999999999999999998655544444 88999999998                  588


Q ss_pred             EEEEEeCCCcEEEEECCC-CeEEEEE-eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy226          306 YLATGSRDKTIKLWDVGS-GSLLFTL-IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD  362 (406)
Q Consensus       306 ~l~s~~~d~~i~lwd~~~-~~~~~~~-~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd  362 (406)
                      +||.|+.|+.|.||.+.. |+..... +.|.++|+.+.||+|++||.+-|.|-.|-.|.
T Consensus       461 ~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  461 FLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             EEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            999999999999999864 3433332 23458999999999999999999999999995

>KOG1063|consensus

Probab=99.94  E-value=4.7e-25  Score=203.73  Aligned_cols=291  Identities=26%  Similarity=0.447  Sum_probs=223.2

Q ss_pred             CceEEeccCCCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCCCc-------------------------EE------E
Q psy226           97 PEKFALSGHRSPVIKVIFHPVFS---LMASCSEDATIRLWDYETGE-------------------------YE------R  142 (406)
Q Consensus        97 ~~~~~l~~h~~~V~~v~~~p~~~---~latgs~dg~v~vwd~~~~~-------------------------~~------~  142 (406)
                      .....+.||.+-|..++|...+.   +|||+|+|..||||.+.-+.                         ..      .
T Consensus       182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea  261 (764)
T KOG1063|consen  182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA  261 (764)
T ss_pred             eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence            34557899999999999987654   89999999999999653211                         01      1


Q ss_pred             EecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC--eE-----EEEEecCCcceEEEEEecCCCEEEEEeCCCcEE
Q psy226          143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY--QC-----LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIK  215 (406)
Q Consensus       143 ~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~--~~-----~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~  215 (406)
                      .+.||.+-|.++.|+|.+..|+++|.|.++.+|...+.  --     +..+.|......+..|+|+++.+++-+.-|..+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            23499999999999999999999999999999976543  21     222334455689999999999999999999999


Q ss_pred             EEEcCC-C--eEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC-ccc---eeEEecCCceEEEEEeCCCCCc
Q psy226          216 MWEVAT-G--YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT-KET---KAELRGHDHTVECVAWAPGVAS  288 (406)
Q Consensus       216 iwd~~~-~--~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~  288 (406)
                      +|.... .  .....+.||.+.|..++|+|.|.++++.|.|.+-|+|-.-. ...   +..-+-|...+.|+++.+.   
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~---  418 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE---  418 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC---
Confidence            998332 1  23345679999999999999999999999999999986541 111   2223457777888887762   


Q ss_pred             cccccccCCCCCCCCCCEEEEEeCCCcEEEEECC-------------------------------------------CCe
Q psy226          289 ESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG-------------------------------------------SGS  325 (406)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~-------------------------------------------~~~  325 (406)
                                     ...+++|.+...+|+|+..                                           +|.
T Consensus       419 ---------------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~  483 (764)
T KOG1063|consen  419 ---------------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGG  483 (764)
T ss_pred             ---------------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccc
Confidence                           1234444444444444321                                           000


Q ss_pred             ---------------------------------EEEEEeCCCcCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc
Q psy226          326 ---------------------------------LLFTLIGHDNWVRGVTFHPGGKYLVSCGDD-----KTLRVWDTANKR  367 (406)
Q Consensus       326 ---------------------------------~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d-----~~i~vwd~~~~~  367 (406)
                                                       .+..+.||.-.|.+++.+|+|+++||++..     ..|++|+..+-.
T Consensus       484 ~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~  563 (764)
T KOG1063|consen  484 EAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL  563 (764)
T ss_pred             ccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh
Confidence                                             012345888899999999999999998753     469999999988


Q ss_pred             cceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          368 NMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       368 ~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .++.+.+|+-.|+.|+|+||++||++.|.|+++.+|..
T Consensus       564 ~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~  601 (764)
T KOG1063|consen  564 QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV  601 (764)
T ss_pred             hhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence            88899999999999999999999999999999999974

>KOG1034|consensus

Probab=99.94  E-value=3.2e-25  Score=188.27  Aligned_cols=297  Identities=24%  Similarity=0.438  Sum_probs=215.0

Q ss_pred             eccCCCCeEEEEEcCC----C-CEEEEEeCCCcEEEEEcCCCc---EEEEec--ccccCeeeEEECCC----CCEEEEEe
Q psy226          102 LSGHRSPVIKVIFHPV----F-SLMASCSEDATIRLWDYETGE---YERALH--GHLDSVQDIAFDQS----GKLLVSCS  167 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~----~-~~latgs~dg~v~vwd~~~~~---~~~~~~--~h~~~V~~l~~~~~----g~~l~sgs  167 (406)
                      ..+|+.+|+.++|++-    . ..+||.+ ...+.+|.....-   ..+...  .|......++|+-+    ..+||.|+
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence            5689999999999963    2 3555555 4678899876533   223222  25556677777643    45889999


Q ss_pred             CCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCeEEEEe---ecCCccEEEEEECCC
Q psy226          168 ADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPD  243 (406)
Q Consensus       168 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~  243 (406)
                      .-|.|+|.|+.++++...+.+|...|..+.|.|+. +++++||.|.+||+||+++..|+..+   .+|.+.|.++.|+++
T Consensus       113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~  192 (385)
T KOG1034|consen  113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD  192 (385)
T ss_pred             ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence            99999999999999999999999999999999975 68999999999999999999999887   479999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCC------C--------CCCCEEEE
Q psy226          244 GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPG------Q--------GGGPYLAT  309 (406)
Q Consensus       244 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~--------~~~~~l~s  309 (406)
                      |.+|++|+.|.++++|++..++-...+.      .+..|.|......+.......+.      .        --|.++++
T Consensus       193 gd~i~ScGmDhslk~W~l~~~~f~~~lE------~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilS  266 (385)
T KOG1034|consen  193 GDRIASCGMDHSLKLWRLNVKEFKNKLE------LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILS  266 (385)
T ss_pred             CCeeeccCCcceEEEEecChhHHhhhhh------hhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheee
Confidence            9999999999999999998543221111      01222222211111000000000      0        01578999


Q ss_pred             EeCCCcEEEEECCC-Ce-------------EEEEEe--CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc--ee
Q psy226          310 GSRDKTIKLWDVGS-GS-------------LLFTLI--GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNM--KT  371 (406)
Q Consensus       310 ~~~d~~i~lwd~~~-~~-------------~~~~~~--~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~--~~  371 (406)
                      =+-++.|..|.... +.             .+.++.  ..+-|-...+|+|-++.||.|...|.|++||++.....  .+
T Consensus       267 kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt  346 (385)
T KOG1034|consen  267 KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT  346 (385)
T ss_pred             cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce
Confidence            99999999997621 11             112222  22334555678888999999999999999999876542  23


Q ss_pred             ecc--ccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          372 LEA--HSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       372 l~~--h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +..  -...|...+|+.++.+|+....|++|--||-
T Consensus       347 l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  347 LTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             EEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            321  2346899999999999999999999999983

>KOG0270|consensus

Probab=99.94  E-value=4.9e-25  Score=194.07  Aligned_cols=275  Identities=21%  Similarity=0.348  Sum_probs=203.1

Q ss_pred             EEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEeccccc-----CeeeEEECC-------CCCEEEEEeCCCcEEEEe
Q psy226          112 VIFHPVFSLMASCSEDA---TIRLWDYETGEYERALHGHLD-----SVQDIAFDQ-------SGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       112 v~~~p~~~~latgs~dg---~v~vwd~~~~~~~~~~~~h~~-----~V~~l~~~~-------~g~~l~sgs~d~~i~vwd  176 (406)
                      +..-|+.++++++-.+.   .+.+|=++....  .+.-|.+     .-.|+.|..       .|+++|.|..|..|.|||
T Consensus       131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~--nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWD  208 (463)
T KOG0270|consen  131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEEE--NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWD  208 (463)
T ss_pred             ceeccCCcEEEEeeccCCceEEEEEEEcCCCc--ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEec
Confidence            44567677777764433   344443333321  1222322     224555532       368999999999999999


Q ss_pred             CCCC---------------------eEEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCeEEEEeecCCcc
Q psy226          177 MSTY---------------------QCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGYCVKTLTGHREW  234 (406)
Q Consensus       177 ~~~~---------------------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~  234 (406)
                      +.-.                     +.-....+|++.|.+++|+..- +.|++||.|.+|++||+.+|++..++..|.+.
T Consensus       209 LDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~  288 (463)
T KOG0270|consen  209 LDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKK  288 (463)
T ss_pred             cccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCc
Confidence            7410                     0001134788899999998754 57899999999999999999999999999999


Q ss_pred             EEEEEECCC-CCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC
Q psy226          235 VRQIKVSPD-GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD  313 (406)
Q Consensus       235 v~~l~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  313 (406)
                      |.++.|+|. ...|++|+.|++|.+.|.+........-.....|+.++|.|.                 ....++++..|
T Consensus       289 Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~-----------------se~~f~~~tdd  351 (463)
T KOG0270|consen  289 VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPH-----------------SENSFFVSTDD  351 (463)
T ss_pred             eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCC-----------------CceeEEEecCC
Confidence            999999984 678999999999999999864433333344678999999985                 24468889999


Q ss_pred             CcEEEEECCCC-eEEEEEeCCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc--cceeeccccceEEEEEEeCCCC
Q psy226          314 KTIKLWDVGSG-SLLFTLIGHDNWVRGVTFHPGG-KYLVSCGDDKTLRVWDTANKR--NMKTLEAHSHFVTSLDFHRAHP  389 (406)
Q Consensus       314 ~~i~lwd~~~~-~~~~~~~~h~~~v~~l~~s~~g-~~l~sgs~d~~i~vwd~~~~~--~~~~l~~h~~~v~~l~~~~~~~  389 (406)
                      |+|+-+|+|+. +++.++..|...|++|++++.- .+++++|.|+.|++|++....  .++.-...-+...|.++.|+..
T Consensus       352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a  431 (463)
T KOG0270|consen  352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVA  431 (463)
T ss_pred             ceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcc
Confidence            99999999875 8999999999999999999864 468899999999999986432  2222111122356778888776


Q ss_pred             E-EEEeeCCCeEEEeec
Q psy226          390 Y-VVTGSVDKTVKVWEC  405 (406)
Q Consensus       390 ~-l~sgs~Dg~v~iw~~  405 (406)
                      + ||.||.-+.++|||.
T Consensus       432 ~~la~GG~k~~~~vwd~  448 (463)
T KOG0270|consen  432 FTLAFGGEKAVLRVWDI  448 (463)
T ss_pred             eEEEecCccceEEEeec
Confidence            4 677888888999995

>KOG0639|consensus

Probab=99.94  E-value=6.2e-26  Score=202.35  Aligned_cols=236  Identities=18%  Similarity=0.343  Sum_probs=205.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGE--YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      .-|..+.++|+++.|++|++-.++.|||+....  +...+........+++.+||.+..+++..||.|.|||+.+...++
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr  545 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR  545 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee
Confidence            457788999999999999999999999987643  333444444567789999999999999999999999999999999


Q ss_pred             EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCc
Q psy226          185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK  264 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~  264 (406)
                      .++||.+.+.|+.++++|..|.+|+.|.+||.||++++..+... .....|.++..+|++.+++.|...+.+-|..... 
T Consensus       546 qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~sk-  623 (705)
T KOG0639|consen  546 QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-  623 (705)
T ss_pred             cccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCC-
Confidence            99999999999999999999999999999999999998665432 2356789999999999999999999998887654 


Q ss_pred             cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcC
Q psy226          265 ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHP  344 (406)
Q Consensus       265 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~  344 (406)
                      .....+..|+..|.++.|.+                  .|+++++.+.|+-+-.|.+..|..++..+. .+.|.++.+|.
T Consensus       624 p~kyqlhlheScVLSlKFa~------------------cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~  684 (705)
T KOG0639|consen  624 PEKYQLHLHESCVLSLKFAY------------------CGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISF  684 (705)
T ss_pred             ccceeecccccEEEEEEecc------------------cCceeeecCchhhhhhccCccccceeeccc-cCcceeeeecc
Confidence            44566788999999999987                  589999999999999999999998888765 45699999999


Q ss_pred             CCCEEEEEeCCCeEEEEeC
Q psy226          345 GGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       345 ~g~~l~sgs~d~~i~vwd~  363 (406)
                      |.++|++||.|+.-.||.+
T Consensus       685 ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  685 DDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             CceEEEecCCCcceEEEEE
Confidence            9999999999998888864

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.94  E-value=6.7e-23  Score=194.44  Aligned_cols=287  Identities=40%  Similarity=0.700  Sum_probs=237.9

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-EEEEecccc-cCeeeEEE-CCCCC-EEEEEeC-CCcEEEE
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE-YERALHGHL-DSVQDIAF-DQSGK-LLVSCSA-DMSLKLW  175 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~-~~~~~~~h~-~~V~~l~~-~~~g~-~l~sgs~-d~~i~vw  175 (406)
                      .+.+|...|.++.|++.+..++.++.|+.+.+|+...+. ....+.++. ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            466899999999999999999999999999999999886 666666644 37777777 78887 5555445 9999999


Q ss_pred             eCCC-CeEEEEEecCCcceEEEEEecCCCEEEEEeC-CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCC-EEEEEeC
Q psy226          176 DMST-YQCLKTMQGHDHNVTGVAFLPNSDFVLSASR-DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT-LLASCSN  252 (406)
Q Consensus       176 d~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~  252 (406)
                      |... ......+..|...|..++|+|++..+++++. |+.+++|++.++..+..+.+|...+.+++++|++. .+++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  219 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS  219 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence            9987 7788889999999999999999998888886 99999999999888999999999999999999998 6666699


Q ss_pred             CCeEEEEeCCCcccee-EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE-EEEE
Q psy226          253 DHTARVWSLATKETKA-ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL-LFTL  330 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~-~~~~  330 (406)
                      |+.+++||...+.... .+.+|.... ...|.|.                  +.++++++.|+.+++|++..... +..+
T Consensus       220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~  280 (466)
T COG2319         220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD------------------GSLLASGSSDGTIRLWDLRSSSSLLRTL  280 (466)
T ss_pred             CCcEEEEECCCCcEEeeecCCCCcce-eEeECCC------------------CCEEEEecCCCcEEEeeecCCCcEEEEE
Confidence            9999999988666666 577777664 3366663                  45788999999999999987664 4455


Q ss_pred             eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec--cccceEEEEEEeCCCCEEEEe-eCCCeEEEeecC
Q psy226          331 IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE--AHSHFVTSLDFHRAHPYVVTG-SVDKTVKVWECR  406 (406)
Q Consensus       331 ~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~--~h~~~v~~l~~~~~~~~l~sg-s~Dg~v~iw~~~  406 (406)
                      .+|...+.++.|+|++..+++++.|+.+++||..+........  .|...+..+.|.+++..++.+ ..|+.+.+|++.
T Consensus       281 ~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  359 (466)
T COG2319         281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR  359 (466)
T ss_pred             ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecC
Confidence            6889999999999999999889999999999988877666665  787789999994332455555 788999999863

>KOG4283|consensus

Probab=99.94  E-value=1.1e-24  Score=182.46  Aligned_cols=205  Identities=29%  Similarity=0.526  Sum_probs=170.3

Q ss_pred             cccccCeeeEEECC-CCCEEEEEeCCCcEEEEeCCCCe------------EE---EEEecCCcceEEEEEec-CCCEEEE
Q psy226          145 HGHLDSVQDIAFDQ-SGKLLVSCSADMSLKLWDMSTYQ------------CL---KTMQGHDHNVTGVAFLP-NSDFVLS  207 (406)
Q Consensus       145 ~~h~~~V~~l~~~~-~g~~l~sgs~d~~i~vwd~~~~~------------~~---~~~~~h~~~v~~~~~~p-~~~~l~s  207 (406)
                      ..|.+.|+++.+.+ .|+++++|+.||.|.+||+++-.            |+   ..-.+|.-.|.++.|-| |...+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            45889999999987 58999999999999999997422            11   11246788899999999 5568888


Q ss_pred             EeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCC---CCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCC
Q psy226          208 ASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD---GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAP  284 (406)
Q Consensus       208 ~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  284 (406)
                      +|-|.++++||..+-+....|+ -.+.|.+-+++|-   ..++|+|..|-.|++.|+.++...+.+.+|...|.++.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence            9999999999999988777765 3455777777773   45789999999999999999999999999999999999999


Q ss_pred             CCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC-eEEEEE--------------eCCCcCEEEEEEcCCCCEE
Q psy226          285 GVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG-SLLFTL--------------IGHDNWVRGVTFHPGGKYL  349 (406)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~-~~~~~~--------------~~h~~~v~~l~~s~~g~~l  349 (406)
                      .                 ..-.|++|+.||.||+||++.- .+...+              ..|.+.|.+++|+.+|.++
T Consensus       199 ~-----------------~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l  261 (397)
T KOG4283|consen  199 S-----------------SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL  261 (397)
T ss_pred             C-----------------ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence            5                 3457999999999999999753 333333              3567789999999999999


Q ss_pred             EEEeCCCeEEEEeCCCCc
Q psy226          350 VSCGDDKTLRVWDTANKR  367 (406)
Q Consensus       350 ~sgs~d~~i~vwd~~~~~  367 (406)
                      ++++.|..+++|+..+|+
T Consensus       262 ~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  262 ASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             hhccCccceEEeecccCc
Confidence            999999999999987764

>KOG1538|consensus

Probab=99.94  E-value=9.7e-25  Score=200.81  Aligned_cols=277  Identities=19%  Similarity=0.319  Sum_probs=217.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      .|+.++|-|||+.|+.+. +..+.+||.+.|....++++|.+.|++++|+.+|+++++|+.|..|.+|+..-...++  .
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--Y   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--Y   90 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--e
Confidence            789999999999887765 4579999999999999999999999999999999999999999999999864322221  2


Q ss_pred             cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccce
Q psy226          188 GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETK  267 (406)
Q Consensus       188 ~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  267 (406)
                      .|.+.|.|+.|+|-.+.|++|+... .-+|........+  ......+.+++|..||++++.|-.+|+|.+-+-...+..
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence            5999999999999999999998653 4577654432211  112356788999999999999999999999865333322


Q ss_pred             eE--EecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCC
Q psy226          268 AE--LRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPG  345 (406)
Q Consensus       268 ~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~  345 (406)
                      ..  -.+...+|.+++|+|....             .....+++.....++.+|.+. |+.+-.-..-.-...|+.+.|+
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~-------------G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~N  233 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGE-------------GRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTN  233 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCC-------------CccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccC
Confidence            22  2246788999999985321             224578888888999998874 4443322222223568899999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          346 GKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       346 g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |.|++.|+.|+.+++|. +.|-.+.++......|+.++.+|++++++.|+.||+|.-|++
T Consensus       234 GEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  234 GEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             CcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            99999999999999996 557777888777889999999999999999999999988764

>KOG0302|consensus

Probab=99.93  E-value=1.3e-24  Score=187.69  Aligned_cols=241  Identities=25%  Similarity=0.403  Sum_probs=191.2

Q ss_pred             eccCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCC----------------cEEEEecccccCeeeEEECCCC-CE
Q psy226          102 LSGHRSPVIKVIFHPVF--SLMASCSEDATIRLWDYETG----------------EYERALHGHLDSVQDIAFDQSG-KL  162 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~--~~latgs~dg~v~vwd~~~~----------------~~~~~~~~h~~~V~~l~~~~~g-~~  162 (406)
                      ..+|.+.|+.+.-.|.+  .+.|+=+..|.|.|||+...                +.+.++.+|...=.+|+|||-. ..
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            45788999999988865  46667788999999996531                2355678899999999999943 35


Q ss_pred             EEEEeCCCcEEEEeCCCCeEE---EEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCC---eEEEEeecCCccE
Q psy226          163 LVSCSADMSLKLWDMSTYQCL---KTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATG---YCVKTLTGHREWV  235 (406)
Q Consensus       163 l~sgs~d~~i~vwd~~~~~~~---~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~---~~~~~~~~~~~~v  235 (406)
                      |++|..-+.|++|...++.-.   .-+.+|+..|..++|+|.. ..+++||-||+|+|||++.+   .++.+ +.|...|
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDV  305 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDV  305 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCce
Confidence            788888889999998876432   3456799999999999975 47899999999999999988   34444 7899999


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCC---ccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC
Q psy226          236 RQIKVSPDGTLLASCSNDHTARVWSLAT---KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR  312 (406)
Q Consensus       236 ~~l~~~~~~~~l~s~~~d~~v~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  312 (406)
                      +.|+|+..-.+||+|+.||+++|||++.   ++++..++-|..+|+++.|+|..                 ...+++++.
T Consensus       306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e-----------------~s~iaasg~  368 (440)
T KOG0302|consen  306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE-----------------DSVIAASGE  368 (440)
T ss_pred             eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc-----------------CceEEeccC
Confidence            9999999888999999999999999975   46788999999999999999963                 346889999


Q ss_pred             CCcEEEEECCCC-------------------eEEEEEeCCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEe
Q psy226          313 DKTIKLWDVGSG-------------------SLLFTLIGHDNWVRGVTFHPGG-KYLVSCGDDKTLRVWD  362 (406)
Q Consensus       313 d~~i~lwd~~~~-------------------~~~~~~~~h~~~v~~l~~s~~g-~~l~sgs~d~~i~vwd  362 (406)
                      |.+|.+||+.--                   ++++.-. -...+..|.|+++- .+|++.+.|| +.||.
T Consensus       369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             CCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            999999998421                   1121111 24468889999864 4788888887 45553

>KOG0270|consensus

Probab=99.93  E-value=5.5e-25  Score=193.77  Aligned_cols=244  Identities=21%  Similarity=0.299  Sum_probs=188.1

Q ss_pred             eEEEEEcCC-------CCEEEEEeCCCcEEEEEcCCCcE--------------E-------EEecccccCeeeEEECCCC
Q psy226          109 VIKVIFHPV-------FSLMASCSEDATIRLWDYETGEY--------------E-------RALHGHLDSVQDIAFDQSG  160 (406)
Q Consensus       109 V~~v~~~p~-------~~~latgs~dg~v~vwd~~~~~~--------------~-------~~~~~h~~~V~~l~~~~~g  160 (406)
                      -.|++|...       |+++|.|..|..|.|||+.=...              .       ....+|++.|.+|+|+..-
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            356676432       57999999999999999642110              0       0123799999999998764


Q ss_pred             -CEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecC-CCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEE
Q psy226          161 -KLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI  238 (406)
Q Consensus       161 -~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l  238 (406)
                       +.||+||.|.+|++||+.++++..++..|...|.++.|+|. ..+|++|+.|++|.+.|.+...+....-.-.+.|-.+
T Consensus       256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence             58999999999999999999999999999999999999995 4689999999999999998532222211234568889


Q ss_pred             EECCCC-CEEEEEeCCCeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcE
Q psy226          239 KVSPDG-TLLASCSNDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTI  316 (406)
Q Consensus       239 ~~~~~~-~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  316 (406)
                      +|.|.. ..++++..||+|+-+|++.. +++-+++.|..+|.++.+++..                 ..++++++.|+.|
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~-----------------p~~l~t~s~d~~V  398 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQT-----------------PGLLSTASTDKVV  398 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCC-----------------CcceeeccccceE
Confidence            999865 56778889999999999986 7889999999999999998753                 3479999999999


Q ss_pred             EEEECCCCeE--EEEEeCCCcCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCccc
Q psy226          317 KLWDVGSGSL--LFTLIGHDNWVRGVTFHPGGK-YLVSCGDDKTLRVWDTANKRNM  369 (406)
Q Consensus       317 ~lwd~~~~~~--~~~~~~h~~~v~~l~~s~~g~-~l~sgs~d~~i~vwd~~~~~~~  369 (406)
                      ++|++.....  +..-.-.-+...|.++.|+-. +++.|+..+.++|||+.+...+
T Consensus       399 klw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  399 KLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             EEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            9999864332  211111123366777888765 4677888889999999876554

>KOG0302|consensus

Probab=99.93  E-value=2.5e-24  Score=185.93  Aligned_cols=238  Identities=26%  Similarity=0.536  Sum_probs=186.4

Q ss_pred             ecccccCeeeEEECCCC--CEEEEEeCCCcEEEEeCC----------------CCeEEEEEecCCcceEEEEEecCC-CE
Q psy226          144 LHGHLDSVQDIAFDQSG--KLLVSCSADMSLKLWDMS----------------TYQCLKTMQGHDHNVTGVAFLPNS-DF  204 (406)
Q Consensus       144 ~~~h~~~V~~l~~~~~g--~~l~sgs~d~~i~vwd~~----------------~~~~~~~~~~h~~~v~~~~~~p~~-~~  204 (406)
                      .-+|.+.++.+.-++-|  .+.++-+..|.|+|||+.                ..+.+.++.+|...-++++|+|-. ..
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            44678888888777655  466677788999999974                234577889999999999999933 35


Q ss_pred             EEEEeCCCcEEEEEcCCCeE---EEEeecCCccEEEEEECCC-CCEEEEEeCCCeEEEEeCCCccce--eEEecCCceEE
Q psy226          205 VLSASRDKTIKMWEVATGYC---VKTLTGHREWVRQIKVSPD-GTLLASCSNDHTARVWSLATKETK--AELRGHDHTVE  278 (406)
Q Consensus       205 l~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~  278 (406)
                      |++|.--+.|++|...+|.-   ...+.+|+..|..+.|+|. ...|++||-||+|+|||++.+...  ...+.|...|.
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN  306 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN  306 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence            78888888999999888643   2346789999999999995 468999999999999999987322  23478999999


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC---CeEEEEEeCCCcCEEEEEEcCCC-CEEEEEeC
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS---GSLLFTLIGHDNWVRGVTFHPGG-KYLVSCGD  354 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~---~~~~~~~~~h~~~v~~l~~s~~g-~~l~sgs~  354 (406)
                      .+.|+-.                  -.+||+|+.||+++|||++.   ++++.+|.-|..+|++|.|+|.. ..|+++|.
T Consensus       307 VISWnr~------------------~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~  368 (440)
T KOG0302|consen  307 VISWNRR------------------EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE  368 (440)
T ss_pred             eEEccCC------------------cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC
Confidence            9999853                  34899999999999999975   67889999999999999999964 56778889


Q ss_pred             CCeEEEEeCCCCcc--------cee--------eccc--cceEEEEEEeCCCC-EEEEeeCCCe
Q psy226          355 DKTLRVWDTANKRN--------MKT--------LEAH--SHFVTSLDFHRAHP-YVVTGSVDKT  399 (406)
Q Consensus       355 d~~i~vwd~~~~~~--------~~~--------l~~h--~~~v~~l~~~~~~~-~l~sgs~Dg~  399 (406)
                      |..|.+||+....-        ...        +-.|  ...|..|.||+.-+ +|+|.+.||-
T Consensus       369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence            99999999864221        111        1123  23577889998765 7788888883

>KOG1009|consensus

Probab=99.93  E-value=1.2e-23  Score=183.37  Aligned_cols=295  Identities=21%  Similarity=0.335  Sum_probs=211.6

Q ss_pred             CCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC---------cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEE
Q psy226          106 RSPVIKVIFHPVFS-LMASCSEDATIRLWDYETG---------EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW  175 (406)
Q Consensus       106 ~~~V~~v~~~p~~~-~latgs~dg~v~vwd~~~~---------~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vw  175 (406)
                      ..||..+.|++... .+|||+.|..|++|-++.+         ++...+..|...|+++.|+|+|++|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            36899999999876 9999999999999976543         2345677899999999999999999999999999999


Q ss_pred             eCC--------C--------CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEE
Q psy226          176 DMS--------T--------YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK  239 (406)
Q Consensus       176 d~~--------~--------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~  239 (406)
                      -..        +        +...+.+.+|...|..++|+|++.++++++-|.++++||+..|.....+.+|...+..++
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA  172 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence            654        2        345677889999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCC-------CccccccccCCCCCCCCCCEEEEEeC
Q psy226          240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGV-------ASESISEAAGRPPGQGGGPYLATGSR  312 (406)
Q Consensus       240 ~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~s~~~  312 (406)
                      |+|-++++++-+.|...+.+++...+.......  ......++.+..       ..........+....++|.++++.+.
T Consensus       173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~--~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag  250 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL--DIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG  250 (434)
T ss_pred             cchhhhhhhhhccCcccceeeeeeeeeeeeeee--eEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence            999999999999999888887654433221110  001111111110       01111111222223345666655432


Q ss_pred             ----C-----CcEEEEECCC-CeEEEEEeCCCcCEEEEEEcCC-----------------CCEEEEEeCCCeEEEEeCCC
Q psy226          313 ----D-----KTIKLWDVGS-GSLLFTLIGHDNWVRGVTFHPG-----------------GKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       313 ----d-----~~i~lwd~~~-~~~~~~~~~h~~~v~~l~~s~~-----------------g~~l~sgs~d~~i~vwd~~~  365 (406)
                          .     ++.++|+-.. .++...+.+-..++..+.|+|-                 -+.++.......|+|||..+
T Consensus       251 ~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~  330 (434)
T KOG1009|consen  251 LFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQT  330 (434)
T ss_pred             eeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccc
Confidence                1     2234443221 2344445555555556666551                 12333334456899999998


Q ss_pred             Cccceee-ccccceEEEEEEeCCCCEEEEeeCCCeEEE
Q psy226          366 KRNMKTL-EAHSHFVTSLDFHRAHPYVVTGSVDKTVKV  402 (406)
Q Consensus       366 ~~~~~~l-~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~i  402 (406)
                      ..++... +.|-..|++++|+++|.+|+..|.||.+.+
T Consensus       331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence            7776655 568889999999999999999999997654

>KOG0642|consensus

Probab=99.93  E-value=3.1e-25  Score=200.80  Aligned_cols=260  Identities=22%  Similarity=0.363  Sum_probs=195.3

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--------cEEEEecccccCeeeEEECCCCCEEEEEeCC
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG--------EYERALHGHLDSVQDIAFDQSGKLLVSCSAD  169 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~--------~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d  169 (406)
                      .++++..|.+.|..++|+|..+.|++|+.||++++|+++..        +.+.++++|.++|.|+++.+++..+++|+.|
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D  365 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID  365 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence            45678889999999999999999999999999999998321        3466789999999999999999999999999


Q ss_pred             CcEEEEeCCC-------C---eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCc--cEEE
Q psy226          170 MSLKLWDMST-------Y---QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE--WVRQ  237 (406)
Q Consensus       170 ~~i~vwd~~~-------~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~--~v~~  237 (406)
                      |+|+.|++..       +   .....+.||.+.|+.+++++....|++||.||++++|+...... .++.....  .-..
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls  444 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS  444 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence            9999996541       1   23456789999999999999999999999999999999865544 33332222  2233


Q ss_pred             EEECCCC-CEEEEEeCCCeEEEEeCCCccceeEEecC-------CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE
Q psy226          238 IKVSPDG-TLLASCSNDHTARVWSLATKETKAELRGH-------DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT  309 (406)
Q Consensus       238 l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  309 (406)
                      +.+-... .+.++...-+.-.+.++........+...       ...+..+.+.|                  ++.+.++
T Consensus       445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~------------------~~~~~~~  506 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP------------------TADITFT  506 (577)
T ss_pred             EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC------------------CCCeeEe
Confidence            3332221 12222222222223333332222222111       12233444444                  4678999


Q ss_pred             EeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecccc
Q psy226          310 GSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS  376 (406)
Q Consensus       310 ~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~  376 (406)
                      +..|+.|+++|..++.+++....|...++++++.|+|-+|.+|+.|+.+++|.+....++....+|.
T Consensus       507 ~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  507 AHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            9999999999999999999999999999999999999999999999999999998887777666664

>KOG4378|consensus

Probab=99.93  E-value=2.5e-24  Score=191.95  Aligned_cols=262  Identities=20%  Similarity=0.337  Sum_probs=207.1

Q ss_pred             EeCCCcEEEEEcCCCcEEEEecccc--cCeeeEEECCCCCEEEE--EeCCCcEEEEeCCC--CeE--EEEEecCCcceEE
Q psy226          124 CSEDATIRLWDYETGEYERALHGHL--DSVQDIAFDQSGKLLVS--CSADMSLKLWDMST--YQC--LKTMQGHDHNVTG  195 (406)
Q Consensus       124 gs~dg~v~vwd~~~~~~~~~~~~h~--~~V~~l~~~~~g~~l~s--gs~d~~i~vwd~~~--~~~--~~~~~~h~~~v~~  195 (406)
                      +|...++++||+...+....+..|+  ..+.++.|+.... |++  .+.|..+++|.-..  ++.  +....+.  .-.|
T Consensus         8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~C   84 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFC   84 (673)
T ss_pred             eccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHH
Confidence            3444579999998766555554444  3488999987653 444  45678899996432  211  2222222  3445


Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecC-C
Q psy226          196 VAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH-D  274 (406)
Q Consensus       196 ~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~  274 (406)
                      ++......++++|+..+.|+|||++...+.+.+++|...|+++.++....+||+++..|-|.|..+.++.....+... .
T Consensus        85 v~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg  164 (673)
T KOG4378|consen   85 VACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG  164 (673)
T ss_pred             HhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC
Confidence            555555689999999999999999988889999999999999999999999999999999999999888776666544 4


Q ss_pred             ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE-eCCCcCEEEEEEcCCC-CEEEEE
Q psy226          275 HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL-IGHDNWVRGVTFHPGG-KYLVSC  352 (406)
Q Consensus       275 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~-~~h~~~v~~l~~s~~g-~~l~sg  352 (406)
                      ..|.-+.|+|.                 ...+|.+++.+|.|.+||+....+++.+ ..|..+...|+|+|.. ..|++.
T Consensus       165 qsvRll~ys~s-----------------kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV  227 (673)
T KOG4378|consen  165 QSVRLLRYSPS-----------------KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV  227 (673)
T ss_pred             CeEEEeecccc-----------------cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe
Confidence            56778888874                 2346889999999999999877777654 4699999999999965 567899


Q ss_pred             eCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          353 GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       353 s~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +.|+.|++||+...+....+. ...+.+.|+|.++|.+|+.|...|.|..||+|
T Consensus       228 G~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  228 GYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             cccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence            999999999999877777775 34588999999999999999999999999986

>KOG0307|consensus

Probab=99.93  E-value=2.2e-25  Score=216.81  Aligned_cols=278  Identities=21%  Similarity=0.370  Sum_probs=216.3

Q ss_pred             EEEEcCCCC-EEEEE----------eCCCcEEEEEc--CCCcEEEEecc---cccCeeeEEECCCCCE----EEEEeCCC
Q psy226          111 KVIFHPVFS-LMASC----------SEDATIRLWDY--ETGEYERALHG---HLDSVQDIAFDQSGKL----LVSCSADM  170 (406)
Q Consensus       111 ~v~~~p~~~-~latg----------s~dg~v~vwd~--~~~~~~~~~~~---h~~~V~~l~~~~~g~~----l~sgs~d~  170 (406)
                      .++|+|.+. ++|+|          +.+.++.||.+  .+.+......+   -....+.|+|.+.|..    |+.|..||
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG   90 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG   90 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence            457777775 55544          34556666643  33332111111   2346788999987765    88899999


Q ss_pred             cEEEEeCCCC------eEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEEee--cCCccEEEEEEC
Q psy226          171 SLKLWDMSTY------QCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKTLT--GHREWVRQIKVS  241 (406)
Q Consensus       171 ~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~  241 (406)
                      .|.+||....      ..+.+...|.+.|.++.|++... .|++|+.||.|.|||+..-..-.+..  ...+.|.+++|+
T Consensus        91 ~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWN  170 (1049)
T KOG0307|consen   91 NIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWN  170 (1049)
T ss_pred             ceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccc
Confidence            9999997642      23566778999999999999765 99999999999999997744333331  245679999998


Q ss_pred             CCC-CEEEEEeCCCeEEEEeCCCccceeEEecCCc--eEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC---c
Q psy226          242 PDG-TLLASCSNDHTARVWSLATKETKAELRGHDH--TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK---T  315 (406)
Q Consensus       242 ~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~  315 (406)
                      ..- ..|++++.+|.+.|||++..+++..+..+..  .+..+.|+|+.+                 ..+++++.|.   .
T Consensus       171 rkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a-----------------Tql~~As~dd~~Pv  233 (1049)
T KOG0307|consen  171 RKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA-----------------TQLLVASGDDSAPV  233 (1049)
T ss_pred             hhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-----------------eeeeeecCCCCCce
Confidence            754 5678999999999999999888777766654  467899999743                 3466666654   5


Q ss_pred             EEEEECCCC-eEEEEEeCCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCC-EEE
Q psy226          316 IKLWDVGSG-SLLFTLIGHDNWVRGVTFHPGG-KYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP-YVV  392 (406)
Q Consensus       316 i~lwd~~~~-~~~~~~~~h~~~v~~l~~s~~g-~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~-~l~  392 (406)
                      |.+||+|.. ..+..+.+|...|.++.|++.+ .+|+|++.|+.|.+|+.++++.+.++....+.+..+.|.|... .++
T Consensus       234 iqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A  313 (1049)
T KOG0307|consen  234 IQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMA  313 (1049)
T ss_pred             eEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhh
Confidence            999999864 4667788999999999999977 8899999999999999999999999988889999999999998 788


Q ss_pred             EeeCCCeEEEeec
Q psy226          393 TGSVDKTVKVWEC  405 (406)
Q Consensus       393 sgs~Dg~v~iw~~  405 (406)
                      .++.||.|.|+.+
T Consensus       314 ~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  314 AASFDGKISIYSL  326 (1049)
T ss_pred             hheeccceeeeee
Confidence            8999999999875

>KOG2919|consensus

Probab=99.92  E-value=2.4e-23  Score=176.60  Aligned_cols=270  Identities=21%  Similarity=0.353  Sum_probs=210.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE------------EEEec-ccccCeeeEEEC-------CCCCEEEEEeCC
Q psy226          110 IKVIFHPVFSLMASCSEDATIRLWDYETGEY------------ERALH-GHLDSVQDIAFD-------QSGKLLVSCSAD  169 (406)
Q Consensus       110 ~~v~~~p~~~~latgs~dg~v~vwd~~~~~~------------~~~~~-~h~~~V~~l~~~-------~~g~~l~sgs~d  169 (406)
                      ..+.|+|||..|.+-+.|..+.+|++...-+            ...++ .....|.+-+|-       |+..++++.+.|
T Consensus        53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence            3578999999999999999999998753211            11111 123456666663       677899999999


Q ss_pred             CcEEEEeCCCCeEEEEEec--CCc---ceEEEEEecCCCEEEEEeCCCcEEEEEc-CCCeEEEE--e-----ecCCccEE
Q psy226          170 MSLKLWDMSTYQCLKTMQG--HDH---NVTGVAFLPNSDFVLSASRDKTIKMWEV-ATGYCVKT--L-----TGHREWVR  236 (406)
Q Consensus       170 ~~i~vwd~~~~~~~~~~~~--h~~---~v~~~~~~p~~~~l~s~s~d~~i~iwd~-~~~~~~~~--~-----~~~~~~v~  236 (406)
                      .-|++||.-+++....+.+  |.+   ...+++|+|||.+|++| ..+.|+++|+ +.|.....  -     .+..+.+.
T Consensus       133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis  211 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS  211 (406)
T ss_pred             CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence            9999999999887666654  333   34689999999998876 5678999999 55542211  1     23356788


Q ss_pred             EEEECCCC-CEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC-CC
Q psy226          237 QIKVSPDG-TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR-DK  314 (406)
Q Consensus       237 ~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~  314 (406)
                      +++|+|-. ..++.|+....+-|+.-....+...+.+|...|+-+.|.++                  |..|.+|++ |.
T Consensus       212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed------------------Gn~lfsGaRk~d  273 (406)
T KOG2919|consen  212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED------------------GNKLFSGARKDD  273 (406)
T ss_pred             eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC------------------cCeecccccCCC
Confidence            99999954 58999999999999998889999999999999999999984                  566777775 67


Q ss_pred             cEEEEECCC-CeEEEEEeCCCc-CEEE--EEEcCCCCEEEEEeCCCeEEEEeCCC-CccceeeccccceEEEEEEeCCCC
Q psy226          315 TIKLWDVGS-GSLLFTLIGHDN-WVRG--VTFHPGGKYLVSCGDDKTLRVWDTAN-KRNMKTLEAHSHFVTSLDFHRAHP  389 (406)
Q Consensus       315 ~i~lwd~~~-~~~~~~~~~h~~-~v~~--l~~s~~g~~l~sgs~d~~i~vwd~~~-~~~~~~l~~h~~~v~~l~~~~~~~  389 (406)
                      .|-.||++. +.++..+..|.. .-..  ....|+|++|++|+.||.|++||+.+ +..+..+..|+..|+.++++|--+
T Consensus       274 kIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mp  353 (406)
T KOG2919|consen  274 KILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMP  353 (406)
T ss_pred             eEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccc
Confidence            899999986 445666666644 2223  45578999999999999999999988 666778888999999999999999


Q ss_pred             EEEEeeCCC
Q psy226          390 YVVTGSVDK  398 (406)
Q Consensus       390 ~l~sgs~Dg  398 (406)
                      ++|+++...
T Consensus       354 ilatssGqr  362 (406)
T KOG2919|consen  354 ILATSSGQR  362 (406)
T ss_pred             eeeeccCce
Confidence            999987543

>KOG2096|consensus

Probab=99.92  E-value=2.9e-23  Score=175.80  Aligned_cols=242  Identities=23%  Similarity=0.391  Sum_probs=176.4

Q ss_pred             EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE-----EEEEecCCcceEEEEEecCCC-EEEEEeCCCcEE
Q psy226          142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC-----LKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIK  215 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~  215 (406)
                      ..+++|.+.|++++|+.||+.|++++.|++|++|++..+..     ++.-.. -+.-+.+.|.||-. .++++-+..+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcceEEEEEccCCEEE
Confidence            35789999999999999999999999999999999876421     111111 12456789999876 555666777899


Q ss_pred             EEEcCC---CeEEE---------EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeC
Q psy226          216 MWEVAT---GYCVK---------TLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWA  283 (406)
Q Consensus       216 iwd~~~---~~~~~---------~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~  283 (406)
                      +|.+..   |....         .-..|+..+..+-....+.+|++++.|..|.+|+++ ++.+..+......-...+.+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            997632   21111         112356667778888889999999999999999998 66665554433333444455


Q ss_pred             CCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC---CC-----eEEEEEeCCCcCEEEEEEcCCCCEEEEEeCC
Q psy226          284 PGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG---SG-----SLLFTLIGHDNWVRGVTFHPGGKYLVSCGDD  355 (406)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~---~~-----~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d  355 (406)
                      |                  +|+++++++..-.|++|.+-   .|     ..++.+.||.+.|..++|+|+...+++.|.|
T Consensus       238 P------------------~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD  299 (420)
T KOG2096|consen  238 P------------------DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD  299 (420)
T ss_pred             C------------------CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence            5                  68999999999999999862   22     3467899999999999999999999999999


Q ss_pred             CeEEEEeCCC-------Cccceee----ccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          356 KTLRVWDTAN-------KRNMKTL----EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       356 ~~i~vwd~~~-------~~~~~~l----~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      |+++|||++-       .+.+++.    .+-.+.-..|+.+|.+..||.+. ...+++|.
T Consensus       300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~  358 (420)
T KOG2096|consen  300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFA  358 (420)
T ss_pred             CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEE
Confidence            9999999752       2233332    11122234899999999988653 34566654

>KOG4378|consensus

Probab=99.92  E-value=8.1e-24  Score=188.66  Aligned_cols=262  Identities=20%  Similarity=0.258  Sum_probs=212.4

Q ss_pred             eEEEEEcCCCC-EEEEEeCCCcEEEEEcCC--CcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q psy226          109 VIKVIFHPVFS-LMASCSEDATIRLWDYET--GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKT  185 (406)
Q Consensus       109 V~~v~~~p~~~-~latgs~dg~v~vwd~~~--~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~  185 (406)
                      |+.+.|+.... .+|+.+.|..|++|.-..  ++....-+...+.-.|++......++++|+..+.|+|||+....+.+.
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~  116 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF  116 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh
Confidence            78888887664 344556788999996433  222222222223455666666668999999999999999998778889


Q ss_pred             EecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC-CccEEEEEECCCCC-EEEEEeCCCeEEEEeCCC
Q psy226          186 MQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH-REWVRQIKVSPDGT-LLASCSNDHTARVWSLAT  263 (406)
Q Consensus       186 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~-~l~s~~~d~~v~vwd~~~  263 (406)
                      +++|...|+++.++-...+|++++..|-|.|..+.++.....|... ...|+-+.++|..+ +|.+++.+|.|.+||+..
T Consensus       117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g  196 (673)
T KOG4378|consen  117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG  196 (673)
T ss_pred             ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence            9999999999999999999999999999999999998877777655 34567899999766 467789999999999987


Q ss_pred             cccee-EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEE
Q psy226          264 KETKA-ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTF  342 (406)
Q Consensus       264 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~  342 (406)
                      ..+.. -...|..+...++|+|.                 +..+|++-+.|..|.+||++..+....+. -+.+.+.|+|
T Consensus       197 ~sp~~~~~~~HsAP~~gicfsps-----------------ne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf  258 (673)
T KOG4378|consen  197 MSPIFHASEAHSAPCRGICFSPS-----------------NEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAF  258 (673)
T ss_pred             CCcccchhhhccCCcCcceecCC-----------------ccceEEEecccceEEEeecccccccceee-ecCCcceeee
Confidence            76654 34678999999999985                 46689999999999999998776655543 3456889999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCC-CccceeeccccceEEEEEEeCCC
Q psy226          343 HPGGKYLVSCGDDKTLRVWDTAN-KRNMKTLEAHSHFVTSLDFHRAH  388 (406)
Q Consensus       343 s~~g~~l~sgs~d~~i~vwd~~~-~~~~~~l~~h~~~v~~l~~~~~~  388 (406)
                      +++|.+|+.|...|.|..||++. ..++.++.+|...|++++|-|.-
T Consensus       259 ~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  259 SECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            99999999999999999999975 56889999999999999998864

>KOG0650|consensus

Probab=99.92  E-value=1.2e-23  Score=191.41  Aligned_cols=243  Identities=28%  Similarity=0.489  Sum_probs=198.6

Q ss_pred             EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCE-EEEEeCCCcEEEEEcC
Q psy226          142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDF-VLSASRDKTIKMWEVA  220 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~i~iwd~~  220 (406)
                      ..+.||++.|.+|...|.|..|++|+.||+|+||.+.++.|++++.. ...|.|++|+|.++. +++.+....+.|-+..
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            45689999999999999999999999999999999999999998874 568999999998752 3333333334444321


Q ss_pred             CC-------------------------------------eEEEEeecCCccEEEEEECCCCCEEEEEeCC---CeEEEEe
Q psy226          221 TG-------------------------------------YCVKTLTGHREWVRQIKVSPDGTLLASCSND---HTARVWS  260 (406)
Q Consensus       221 ~~-------------------------------------~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---~~v~vwd  260 (406)
                      -|                                     .-+...-.|...|+.+.|+..|.+|++...+   ..|.|.+
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ  552 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ  552 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence            11                                     0122334577889999999999999997764   5688999


Q ss_pred             CCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEE
Q psy226          261 LATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGV  340 (406)
Q Consensus       261 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l  340 (406)
                      +........++...+.|.++.|+|.                  ..+|++++. ..|||||+..+.++..+.....+|..+
T Consensus       553 LSK~~sQ~PF~kskG~vq~v~FHPs------------------~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~m  613 (733)
T KOG0650|consen  553 LSKRKSQSPFRKSKGLVQRVKFHPS------------------KPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSM  613 (733)
T ss_pred             cccccccCchhhcCCceeEEEecCC------------------CceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeee
Confidence            9877666667667778999999984                  346666654 569999998888777777778899999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCC-CccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          341 TFHPGGKYLVSCGDDKTLRVWDTAN-KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       341 ~~s~~g~~l~sgs~d~~i~vwd~~~-~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      +.+|.|.-|+.|+.|+.+..+|+.. .+..+++.-|...+++|+||+.-++++||+.||++.||.
T Consensus       614 sihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  614 SIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             eecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            9999999999999999999999875 467889999999999999999999999999999999985

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.92  E-value=5.6e-21  Score=181.22  Aligned_cols=289  Identities=39%  Similarity=0.672  Sum_probs=235.9

Q ss_pred             CceEEeccCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEecccccCeeeEEECCCCC-EEEEEeCCCcEEE
Q psy226           97 PEKFALSGHRSPVIKVIFHPVFSLMASCSE-DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK-LLVSCSADMSLKL  174 (406)
Q Consensus        97 ~~~~~l~~h~~~V~~v~~~p~~~~latgs~-dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~-~l~sgs~d~~i~v  174 (406)
                      .....+.+|...|.+++|+|++..+++++. |+.+++|+..++.....+.+|...|.+++|+|++. .+++++.|+.|++
T Consensus       146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~  225 (466)
T COG2319         146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL  225 (466)
T ss_pred             eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence            344567889999999999999999999986 99999999999888889999999999999999998 5566699999999


Q ss_pred             EeCCCCeEEE-EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeE-EEEeecCCccEEEEEECCCCCEEEEEeC
Q psy226          175 WDMSTYQCLK-TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYC-VKTLTGHREWVRQIKVSPDGTLLASCSN  252 (406)
Q Consensus       175 wd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~~  252 (406)
                      ||...+..+. .+.+|.... ...|+|++.++++++.|+.+++|+...... ...+.+|...+.++.|+|++..+++++.
T Consensus       226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  304 (466)
T COG2319         226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS  304 (466)
T ss_pred             EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC
Confidence            9998887777 688888775 448999998899999999999999987664 4455688899999999999988988999


Q ss_pred             CCeEEEEeCCCccceeEEe--cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEE-eCCCcEEEEECCCCeEEEE
Q psy226          253 DHTARVWSLATKETKAELR--GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATG-SRDKTIKLWDVGSGSLLFT  329 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~lwd~~~~~~~~~  329 (406)
                      |+.+++||..+........  .|...+..+.+ +.                 .+..++.+ ..|+.+.+|+.........
T Consensus       305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~d~~~~~~~~~~~~~~~~  366 (466)
T COG2319         305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SP-----------------DGSLLVSGGSDDGTIRLWDLRTGKPLKT  366 (466)
T ss_pred             CCcEEEEEcCCCceEEEeeecccCCceEEEEE-CC-----------------CCCEEEEeecCCCcEEeeecCCCceeEE
Confidence            9999999988877666655  77777888887 42                 11234444 6789999999988773333


Q ss_pred             EeCCCcCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          330 LIGHDNWVRGVTFHPGGKYLVS-CGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       330 ~~~h~~~v~~l~~s~~g~~l~s-gs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ...... +..+.+++ ...++. ++.++.+.+|+............+...+....+.+++.++++++.++.+++|++.
T Consensus       367 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (466)
T COG2319         367 LEGHSN-VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK  442 (466)
T ss_pred             ecCCce-EEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence            333333 88999998 544444 6889999999998877766665443678999999999999999999999999863

>KOG0644|consensus

Probab=99.91  E-value=1.6e-24  Score=203.81  Aligned_cols=272  Identities=22%  Similarity=0.380  Sum_probs=219.3

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~  181 (406)
                      |.||...|+|++|...|.+++||+.|..|+||..+++.+...++||.+.|+.++.+.+..+++++|.|..|++|.+..+.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee------cCCccEEEEEECCCCCEEEEEeCCCe
Q psy226          182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT------GHREWVRQIKVSPDGTLLASCSNDHT  255 (406)
Q Consensus       182 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l~s~~~d~~  255 (406)
                      .+..+.||++.|++++|+|-.    +.+.||++++||.+-.  ...+.      ...+-+.++-|...+.-+++|+.|+.
T Consensus       266 pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~--~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e  339 (1113)
T KOG0644|consen  266 PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE--PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE  339 (1113)
T ss_pred             hHHHHhccccceeeeccCccc----cCCCCCceEecccccc--ccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence            999999999999999999964    7789999999998711  11111      11244667778888899999999999


Q ss_pred             EEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc
Q psy226          256 ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN  335 (406)
Q Consensus       256 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~  335 (406)
                      ...|.+....      .+...+.-+....+                 ...+.+++-.+-.+++|++.+|.+++.+.+|..
T Consensus       340 a~n~e~~~l~------~~~~~lif~t~ssd-----------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd  396 (1113)
T KOG0644|consen  340 ARNHEFEQLA------WRSNLLIFVTRSSD-----------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD  396 (1113)
T ss_pred             cccchhhHhh------hhccceEEEecccc-----------------ccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence            9888764321      11111111111111                 123567777788899999999999999999999


Q ss_pred             CEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCccceee-ccccceEEEEEEeCCCCEEEEeeCCCeEEEe
Q psy226          336 WVRGVTFHPGGKY-LVSCGDDKTLRVWDTANKRNMKTL-EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW  403 (406)
Q Consensus       336 ~v~~l~~s~~g~~-l~sgs~d~~i~vwd~~~~~~~~~l-~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw  403 (406)
                      .+..+.++|-... ..+++.||.+.|||+..+..++.. .+|. .+..-.|+++|..++....-|.+.|.
T Consensus       397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEe
Confidence            9999999996554 458999999999999888776655 4554 56677899999888766666666664

>KOG2048|consensus

Probab=99.91  E-value=9.3e-22  Score=181.80  Aligned_cols=237  Identities=20%  Similarity=0.357  Sum_probs=198.6

Q ss_pred             ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEecC-CcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEE
Q psy226          148 LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY-QCLKTMQGH-DHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV  225 (406)
Q Consensus       148 ~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~-~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~  225 (406)
                      ..+|.++||+.+.+.||.+-.||+|.+|++... -+...+.++ +..|.+++|. .+..|++.+.+|+|.-||+.+++..
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~  103 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK  103 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence            457999999999999999999999999999753 334455555 4679999999 4567888899999999999999999


Q ss_pred             EEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccce--eEEecCCceEEEEEeCCCCCccccccccCCCCCCCC
Q psy226          226 KTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETK--AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGG  303 (406)
Q Consensus       226 ~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (406)
                      ..+......|.+++.+|.+..++.|+.||.+..++...+...  ..+...+..+.++.|.|.                  
T Consensus       104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~------------------  165 (691)
T KOG2048|consen  104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT------------------  165 (691)
T ss_pred             EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC------------------
Confidence            999988999999999999999999999997777777655432  223344678999999983                  


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEe----C----CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc
Q psy226          304 GPYLATGSRDKTIKLWDVGSGSLLFTLI----G----HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH  375 (406)
Q Consensus       304 ~~~l~s~~~d~~i~lwd~~~~~~~~~~~----~----h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h  375 (406)
                      +..+++|+.||.|++||..++..++...    +    -..-|.+|.|-.+ ..|++|.+.|+|.+||...+..++....|
T Consensus       166 ~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h  244 (691)
T KOG2048|consen  166 GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCH  244 (691)
T ss_pred             ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhh
Confidence            5669999999999999999988776221    1    2334677777644 57899999999999999999999999999


Q ss_pred             cceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          376 SHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       376 ~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      ...|.+|+-++++.++.++|.|+.|..+.
T Consensus       245 ~adVl~Lav~~~~d~vfsaGvd~~ii~~~  273 (691)
T KOG2048|consen  245 DADVLALAVADNEDRVFSAGVDPKIIQYS  273 (691)
T ss_pred             hcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence            99999999999999999999999987764

>KOG0321|consensus

Probab=99.91  E-value=6e-23  Score=188.31  Aligned_cols=249  Identities=23%  Similarity=0.378  Sum_probs=185.2

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE--ecccccCeeeEEECCCC-CEEEEEeCCCcEEEEeCC
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERA--LHGHLDSVQDIAFDQSG-KLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~--~~~h~~~V~~l~~~~~g-~~l~sgs~d~~i~vwd~~  178 (406)
                      ...|...|+.+.|-|-...|++++.|.++++||+.+.++...  +.||+..|.+++|.+.. ..|++|+.||.|.|||+.
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            446999999999999778999999999999999999988766  88999999999999965 578999999999999974


Q ss_pred             CCe---------------------------EEEEEecCCcceEE---EEEecCCCEEEEEeC-CCcEEEEEcCCCeEEEE
Q psy226          179 TYQ---------------------------CLKTMQGHDHNVTG---VAFLPNSDFVLSASR-DKTIKMWEVATGYCVKT  227 (406)
Q Consensus       179 ~~~---------------------------~~~~~~~h~~~v~~---~~~~p~~~~l~s~s~-d~~i~iwd~~~~~~~~~  227 (406)
                      -..                           .+.....+...|.+   +.+..|...|++++. |+.|+|||++..++...
T Consensus       176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r  255 (720)
T KOG0321|consen  176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR  255 (720)
T ss_pred             ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence            211                           01111223444555   556668889999887 99999999987654332


Q ss_pred             --------eecC---CccEEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--ceeEEecCCceEEEEEeCCCCCccccccc
Q psy226          228 --------LTGH---REWVRQIKVSPDGTLLASCSNDHTARVWSLATKE--TKAELRGHDHTVECVAWAPGVASESISEA  294 (406)
Q Consensus       228 --------~~~~---~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  294 (406)
                              +..|   .-.+.++..+..|.++.+.+.|+.|+.|++.+..  ++..+.++...-..+.-.           
T Consensus       256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~-----------  324 (720)
T KOG0321|consen  256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSE-----------  324 (720)
T ss_pred             cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeee-----------
Confidence                    2223   2346677788888887777779999999997643  334444433221111100           


Q ss_pred             cCCCCCCCCCCEEEEEeCCCcEEEEECCCCe-EEEEEeCCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC
Q psy226          295 AGRPPGQGGGPYLATGSRDKTIKLWDVGSGS-LLFTLIGHDNWVRGVTFHPGG-KYLVSCGDDKTLRVWDTANK  366 (406)
Q Consensus       295 ~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~-~~~~~~~h~~~v~~l~~s~~g-~~l~sgs~d~~i~vwd~~~~  366 (406)
                           ...++.++++|+.|....+|.+.+.. ....+.||.-.|++++|.|.. .-++++++|.+++||++..+
T Consensus       325 -----lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  325 -----LSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             -----cCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence                 11357899999999999999998754 355678999999999998854 34677899999999998653

>KOG1273|consensus

Probab=99.91  E-value=2.3e-22  Score=170.18  Aligned_cols=239  Identities=17%  Similarity=0.307  Sum_probs=180.4

Q ss_pred             eeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeec
Q psy226          151 VQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG  230 (406)
Q Consensus       151 V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  230 (406)
                      ..|+.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|.+++|+++|+.|+++|.|..|.+||+..|.+++.+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            7899999999999999999999999999998888899999999999999999999999999999999999999888875 


Q ss_pred             CCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE
Q psy226          231 HREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT  309 (406)
Q Consensus       231 ~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  309 (406)
                      ...+|....|+|.. +.++++-.+..-.+.++..+  .+.+            .|..........+.+......|+|+++
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~------------Lp~d~d~dln~sas~~~fdr~g~yIit  170 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSV------------LPKDDDGDLNSSASHGVFDRRGKYIIT  170 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceee------------ccCCCccccccccccccccCCCCEEEE
Confidence            55778999999854 34444444444555554431  1111            111111112222222334567999999


Q ss_pred             EeCCCcEEEEECCCCeEEEEEeCCC-cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------c--cceeecc--ccc
Q psy226          310 GSRDKTIKLWDVGSGSLLFTLIGHD-NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK-------R--NMKTLEA--HSH  377 (406)
Q Consensus       310 ~~~d~~i~lwd~~~~~~~~~~~~h~-~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~-------~--~~~~l~~--h~~  377 (406)
                      |..-|.+.++|..+.+++..++-.. ..|..+.|+..|++|+..+.|+.||.|++..-       .  ..+.++.  ..-
T Consensus       171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~  250 (405)
T KOG1273|consen  171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL  250 (405)
T ss_pred             ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence            9999999999999999988877655 77999999999999999999999999987621       1  1122211  111


Q ss_pred             eEEEEEEeCCCCEEEEeeC-CCeEEEee
Q psy226          378 FVTSLDFHRAHPYVVTGSV-DKTVKVWE  404 (406)
Q Consensus       378 ~v~~l~~~~~~~~l~sgs~-Dg~v~iw~  404 (406)
                      .-.+++|+.+|.|+..|+. -..+.||+
T Consensus       251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE  278 (405)
T KOG1273|consen  251 QWKKCCFSGDGEYVCAGSARAHALYIWE  278 (405)
T ss_pred             hhhheeecCCccEEEeccccceeEEEEe
Confidence            2357789999999977663 34588886

>KOG0322|consensus

Probab=99.91  E-value=4e-23  Score=170.66  Aligned_cols=286  Identities=19%  Similarity=0.256  Sum_probs=200.1

Q ss_pred             CceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCCCEEEEEeCCCcEEEE
Q psy226           97 PEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLLVSCSADMSLKLW  175 (406)
Q Consensus        97 ~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g~~l~sgs~d~~i~vw  175 (406)
                      .+.+.|.+|.+.|+++.|-.++. |.+|..-|.|++|++.+.+-...++ .|+..|+.+..-|+ ..|.+-+.|+.+.+|
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW   82 (323)
T ss_pred             CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence            45678899999999999987765 8899999999999999998887787 56788999998887 568888999999999


Q ss_pred             eCCCCeEEEEEecCCcceEEEEEec-----CCC----EEEEEeCCCc-EEEEEcCCCeEEEEe----ecCCccEEEEEEC
Q psy226          176 DMSTYQCLKTMQGHDHNVTGVAFLP-----NSD----FVLSASRDKT-IKMWEVATGYCVKTL----TGHREWVRQIKVS  241 (406)
Q Consensus       176 d~~~~~~~~~~~~h~~~v~~~~~~p-----~~~----~l~s~s~d~~-i~iwd~~~~~~~~~~----~~~~~~v~~l~~~  241 (406)
                      ++.-...+   ..|.-.+.++-|.+     +++    .++.-+.... +.+-|......+...    .+..+.+++..+.
T Consensus        83 ~ia~s~~i---~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   83 TIAYSAFI---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             EccCcceE---EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            98754332   22333344444432     221    1222111100 111222111111111    1233445555533


Q ss_pred             C-CCC--EEEEEeCCCeEEEEeCCCccce----------eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEE
Q psy226          242 P-DGT--LLASCSNDHTARVWSLATKETK----------AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLA  308 (406)
Q Consensus       242 ~-~~~--~l~s~~~d~~v~vwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  308 (406)
                      - ++.  ++++|-.+|.+.+||+.++..+          .....|..+|.++.|.+....                  =+
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r------------------Gi  221 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR------------------GI  221 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC------------------Cc
Confidence            2 232  4577889999999999886332          334468888888888753211                  13


Q ss_pred             EEeCCCcEEEEECCC--CeEEE--EEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEE
Q psy226          309 TGSRDKTIKLWDVGS--GSLLF--TLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF  384 (406)
Q Consensus       309 s~~~d~~i~lwd~~~--~~~~~--~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~  384 (406)
                      +|+.+..+..|.+..  +.+..  +..-....|..+.+-||++.+|+++.|++||||..++.+.+..|+.|+..|++++|
T Consensus       222 sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAf  301 (323)
T KOG0322|consen  222 SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF  301 (323)
T ss_pred             CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEe
Confidence            566677777887643  32211  11112234888999999999999999999999999999999999999999999999


Q ss_pred             eCCCCEEEEeeCCCeEEEeec
Q psy226          385 HRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       385 ~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +|+..++|++|.|++|.+|++
T Consensus       302 spd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  302 SPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCCCchhhhccCCceEEeeec
Confidence            999999999999999999986

>KOG4328|consensus

Probab=99.90  E-value=2.2e-22  Score=177.98  Aligned_cols=254  Identities=22%  Similarity=0.341  Sum_probs=197.5

Q ss_pred             EcCCCcEEEEecccccCeeeEEECCCC--CEEEEEeCCCcEEEEeCCCC----eEEEEEecCCcceEEEEEecCC-CEEE
Q psy226          134 DYETGEYERALHGHLDSVQDIAFDQSG--KLLVSCSADMSLKLWDMSTY----QCLKTMQGHDHNVTGVAFLPNS-DFVL  206 (406)
Q Consensus       134 d~~~~~~~~~~~~h~~~V~~l~~~~~g--~~l~sgs~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~p~~-~~l~  206 (406)
                      |+.+-......+-+..+|++++|+|.-  +++++|..-|.|-+||+.+.    .-+..+..|..+|.++.|+|.+ ..++
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence            333434445566788999999999965  57889999999999999522    2355677899999999999954 5899


Q ss_pred             EEeCCCcEEEEEcCCCeE--EEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc-eeEEecCCceEEEEEeC
Q psy226          207 SASRDKTIKMWEVATGYC--VKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET-KAELRGHDHTVECVAWA  283 (406)
Q Consensus       207 s~s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~  283 (406)
                      +.|.||+|++-|++.+..  +..+.....++..+.|+.+...++.+..=|...+||+++... ...+.-|...|.+++++
T Consensus       252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN  331 (498)
T ss_pred             eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence            999999999999987643  333334556778888988888888888878999999998765 55567788899999999


Q ss_pred             CCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe----EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEE
Q psy226          284 PGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS----LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR  359 (406)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~----~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~  359 (406)
                      |-                 ...+|++++.|++.+|||++.-+    ++.....|...|.+..|||+|-.|++.+.|..|+
T Consensus       332 P~-----------------~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR  394 (498)
T KOG4328|consen  332 PV-----------------CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR  394 (498)
T ss_pred             CC-----------------CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence            84                 35689999999999999997532    2344456899999999999988899999999999


Q ss_pred             EEeCC----CCccceeeccccce------EEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          360 VWDTA----NKRNMKTLEAHSHF------VTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       360 vwd~~----~~~~~~~l~~h~~~------v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |||..    .-....++. |...      ....+|+|+..++++|-.-..|-|+|-
T Consensus       395 v~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~  449 (498)
T KOG4328|consen  395 VFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG  449 (498)
T ss_pred             EeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence            99983    223333332 3221      345679999999999988888888763

>KOG0642|consensus

Probab=99.90  E-value=5.1e-23  Score=186.48  Aligned_cols=273  Identities=25%  Similarity=0.383  Sum_probs=202.9

Q ss_pred             EEEcCCC--CEEEEEeCCCcEEEE--EcCCC--------------------cEEEEecccccCeeeEEECCCCCEEEEEe
Q psy226          112 VIFHPVF--SLMASCSEDATIRLW--DYETG--------------------EYERALHGHLDSVQDIAFDQSGKLLVSCS  167 (406)
Q Consensus       112 v~~~p~~--~~latgs~dg~v~vw--d~~~~--------------------~~~~~~~~h~~~V~~l~~~~~g~~l~sgs  167 (406)
                      |++.|.+  +..++...|....+|  ++...                    ....++..|.+.|++++|.+....|++|+
T Consensus       234 i~~~~~~~k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~s  313 (577)
T KOG0642|consen  234 ITNPPEGTKSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITAS  313 (577)
T ss_pred             ccCCcccCCCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEec
Confidence            4444442  466677777788888  32211                    11235667899999999999999999999


Q ss_pred             CCCcEEEEeCC--------CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC----------eEEEEee
Q psy226          168 ADMSLKLWDMS--------TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG----------YCVKTLT  229 (406)
Q Consensus       168 ~d~~i~vwd~~--------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~----------~~~~~~~  229 (406)
                      .|+++++|+++        ..+.+.++++|.++|.|+++.+++.++++|+-||+|+.|++...          .....+.
T Consensus       314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~  393 (577)
T KOG0642|consen  314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL  393 (577)
T ss_pred             cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee
Confidence            99999999993        23568899999999999999999999999999999999976421          1345678


Q ss_pred             cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe---cCCc--eEEEEEeCCCCCccccccccCCCCCCCCC
Q psy226          230 GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR---GHDH--TVECVAWAPGVASESISEAAGRPPGQGGG  304 (406)
Q Consensus       230 ~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (406)
                      ||.+.|+.+++++....|++|+.||++|.|+.....+ ..+.   .|..  .+....+.|.                   
T Consensus       394 Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a-------------------  453 (577)
T KOG0642|consen  394 GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPA-------------------  453 (577)
T ss_pred             ccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhH-------------------
Confidence            9999999999999999999999999999999866554 1121   1111  1111111111                   


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEeCC-------CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccc
Q psy226          305 PYLATGSRDKTIKLWDVGSGSLLFTLIGH-------DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSH  377 (406)
Q Consensus       305 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~h-------~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~  377 (406)
                       +.++...-+.--++++...+.+..+...       ...+.-+.++|.+.+.+++..|+.|+++|..++..+....+|..
T Consensus       454 -~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~  532 (577)
T KOG0642|consen  454 -HSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD  532 (577)
T ss_pred             -hhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccc
Confidence             1111112222223333333333333221       13467788999999999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          378 FVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       378 ~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .++++++.|+|.+|++|+.||.|.+|.+
T Consensus       533 svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  533 SVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             eecceeecCCCceEEeecCCceeehhhc
Confidence            9999999999999999999999999976

>KOG1517|consensus

Probab=99.90  E-value=6.3e-22  Score=190.81  Aligned_cols=284  Identities=20%  Similarity=0.376  Sum_probs=209.0

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEeccc---ccCeeeEEECC--CCCEEEEEeCCCcEEEEeC
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGH---LDSVQDIAFDQ--SGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h---~~~V~~l~~~~--~g~~l~sgs~d~~i~vwd~  177 (406)
                      .+...+-..+.|||..+.++++...-.|+|||.+.++....+..+   ...|+.+.+-.  |..++++|+.||.||||+-
T Consensus      1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred             hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence            445556677899999999999998899999999999887666543   34688888744  4568999999999999963


Q ss_pred             -C----CCeEEEEEe---cC----CcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC-CccEEEEEEC-CC
Q psy226          178 -S----TYQCLKTMQ---GH----DHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH-REWVRQIKVS-PD  243 (406)
Q Consensus       178 -~----~~~~~~~~~---~h----~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~-~~  243 (406)
                       .    +.+.+..+.   ++    .+.-.-+.|.....+|++++.-..|+|||.....++..+... ..-|+++.-+ +.
T Consensus      1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred             cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence             2    223332221   11    111234677777778888777899999999988777776533 3345665543 35


Q ss_pred             CCEEEEEeCCCeEEEEeCCCccc---eeEEecCCce--EEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEE
Q psy226          244 GTLLASCSNDHTARVWSLATKET---KAELRGHDHT--VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL  318 (406)
Q Consensus       244 ~~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~l  318 (406)
                      |+.+++|..||.||+||.+...+   +...+.|...  |..+.+.+.                 +-..|++|+.||.|++
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~-----------------G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ-----------------GLGELVSGSQDGDIQL 1283 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC-----------------CCcceeeeccCCeEEE
Confidence            79999999999999999986543   4556667765  666666552                 1125999999999999


Q ss_pred             EECCCCeE--EEEEeCCC---cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc-------ccceEEEEEEeC
Q psy226          319 WDVGSGSL--LFTLIGHD---NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA-------HSHFVTSLDFHR  386 (406)
Q Consensus       319 wd~~~~~~--~~~~~~h~---~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~-------h~~~v~~l~~~~  386 (406)
                      ||++....  ..+...|-   +..+++..+++...+|+|+. +.|+||++.. +.+..+..       ..+.+.||+|||
T Consensus      1284 ~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1284 LDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred             EecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc
Confidence            99987422  12233332   35899999999999999998 9999999863 33333332       233579999999


Q ss_pred             CCCEEEEeeCCCeEEEeec
Q psy226          387 AHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       387 ~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ...+||.|+.|.+|.||.|
T Consensus      1362 ~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1362 HRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred             hhHhhhhccCCceEEEeec
Confidence            9999999999999999976

>KOG1445|consensus

Probab=99.90  E-value=8.7e-22  Score=180.57  Aligned_cols=121  Identities=21%  Similarity=0.425  Sum_probs=102.6

Q ss_pred             EeccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEE-----Eeccc-ccCeeeEEECCCCCEEEEEeCCCcEE
Q psy226          101 ALSGHRSPVIKVIFHPVF-SLMASCSEDATIRLWDYETGEYER-----ALHGH-LDSVQDIAFDQSGKLLVSCSADMSLK  173 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~-~~latgs~dg~v~vwd~~~~~~~~-----~~~~h-~~~V~~l~~~~~g~~l~sgs~d~~i~  173 (406)
                      .+.+|.+.|+.+.|+|.. .+|||||.|..|+||.+..|.-..     ..-+| .-.|.++.|+|...-|+..+..|+++
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~  153 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY  153 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence            578999999999999974 689999999999999988543211     12234 34688999999876666666789999


Q ss_pred             EEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q psy226          174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT  221 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~  221 (406)
                      |||+.+.+.+..+.+|.+.|.++.|+.||.+|++...|+.|+|||-+.
T Consensus       154 i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  154 ITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             EEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            999999999999999999999999999999999999999999999754

>KOG2055|consensus

Probab=99.89  E-value=2.1e-21  Score=171.98  Aligned_cols=236  Identities=17%  Similarity=0.330  Sum_probs=193.0

Q ss_pred             ccCeeeEEECCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeE
Q psy226          148 LDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYC  224 (406)
Q Consensus       148 ~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~  224 (406)
                      .+.|++|.|+|....|++|+.|+++++|.+.  +...++.+.-...+|.+.+|.|+|. .+++++.......||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            4689999999999999999999999999875  3445666666788999999999998 899999999999999988764


Q ss_pred             EE--EeecCC-ccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCC
Q psy226          225 VK--TLTGHR-EWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQ  301 (406)
Q Consensus       225 ~~--~~~~~~-~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  301 (406)
                      .+  .+.++. ..+....++|++++|+..+..|.|.+....+++.+..++ -++.|..+.|+.                 
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-----------------  354 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-----------------  354 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-----------------
Confidence            33  333443 356778899999999999999999999988888776664 356788888874                 


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc-CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------Cccceeecc
Q psy226          302 GGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN-WVRGVTFHPGGKYLVSCGDDKTLRVWDTAN------KRNMKTLEA  374 (406)
Q Consensus       302 ~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~-~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~------~~~~~~l~~  374 (406)
                       ++..|++++.+|.|.+||++...+++.+....+ .-++++.|++|.|||+||..|.|.|||.++      .++++++..
T Consensus       355 -dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN  433 (514)
T KOG2055|consen  355 -DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN  433 (514)
T ss_pred             -CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh
Confidence             467888889999999999999999988865322 346778889999999999999999999653      466777766


Q ss_pred             ccceEEEEEEeCCCCEEEEeeC--CCeEEE
Q psy226          375 HSHFVTSLDFHRAHPYVVTGSV--DKTVKV  402 (406)
Q Consensus       375 h~~~v~~l~~~~~~~~l~sgs~--Dg~v~i  402 (406)
                      -...|++|+|+|+.++||.+|.  +..+++
T Consensus       434 Ltt~Itsl~Fn~d~qiLAiaS~~~knalrL  463 (514)
T KOG2055|consen  434 LTTAITSLQFNHDAQILAIASRVKKNALRL  463 (514)
T ss_pred             hheeeeeeeeCcchhhhhhhhhccccceEE
Confidence            6778999999999999987763  344554

>KOG1188|consensus

Probab=99.88  E-value=2.8e-21  Score=165.36  Aligned_cols=269  Identities=16%  Similarity=0.285  Sum_probs=197.7

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECC--CCCEEEEEeCCCcEEEEeCCCCeEEE--EEecCC-cce
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQ--SGKLLVSCSADMSLKLWDMSTYQCLK--TMQGHD-HNV  193 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~--~g~~l~sgs~d~~i~vwd~~~~~~~~--~~~~h~-~~v  193 (406)
                      +.+|++...|+|++||..+++....+++|...++.+.|..  ....+.+|+.||+|++||+.......  ....+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            6789999999999999999999999999999999999976  46789999999999999998654432  233444 467


Q ss_pred             EEEEEecCCCEEEEEe----CCCcEEEEEcCCCeE-EEE-eecCCccEEEEEECCC-CCEEEEEeCCCeEEEEeCCCccc
Q psy226          194 TGVAFLPNSDFVLSAS----RDKTIKMWEVATGYC-VKT-LTGHREWVRQIKVSPD-GTLLASCSNDHTARVWSLATKET  266 (406)
Q Consensus       194 ~~~~~~p~~~~l~s~s----~d~~i~iwd~~~~~~-~~~-~~~~~~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~~~~~~  266 (406)
                      .+++.+-.++.+++|.    .|-.|.+||++..+. +.. ...|.+.|+++.|+|. .++|++||.||.|.+||+.....
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            7777776777777764    367899999987654 433 4579999999999994 58999999999999999975432


Q ss_pred             ---eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC----------
Q psy226          267 ---KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH----------  333 (406)
Q Consensus       267 ---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h----------  333 (406)
                         +.....|...|.++.|....                 =+.+.+-+...+..+|++..+.+...+...          
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~-----------------ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~  263 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKK-----------------YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKE  263 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCC-----------------cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhh
Confidence               23334577889999997531                 124677778889999999887755443221          


Q ss_pred             --CcCEEEEEEcCCCCEEEEEeC-CCeEEEEeCC---C---Cccceeecc-ccceEEEEEEeCCCCEEEEeeCCCeEEEe
Q psy226          334 --DNWVRGVTFHPGGKYLVSCGD-DKTLRVWDTA---N---KRNMKTLEA-HSHFVTSLDFHRAHPYVVTGSVDKTVKVW  403 (406)
Q Consensus       334 --~~~v~~l~~s~~g~~l~sgs~-d~~i~vwd~~---~---~~~~~~l~~-h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw  403 (406)
                        ...+-..-...++.+++.++. -+...++-+.   +   .+.+..+++ |...|+++.|...+..+.|||.||.+.+|
T Consensus       264 ~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W  343 (376)
T KOG1188|consen  264 DNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAW  343 (376)
T ss_pred             hhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence              011222111223445555444 5556655433   2   334455665 77789999999999999999999999999


Q ss_pred             e
Q psy226          404 E  404 (406)
Q Consensus       404 ~  404 (406)
                      .
T Consensus       344 k  344 (376)
T KOG1188|consen  344 K  344 (376)
T ss_pred             e
Confidence            7

>KOG2919|consensus

Probab=99.88  E-value=1.2e-20  Score=160.33  Aligned_cols=238  Identities=21%  Similarity=0.382  Sum_probs=181.4

Q ss_pred             eeeEEECCCCCEEEEEeCCCcEEEEeCCCC-------e-----EEEEEec-CCcceEEEEEe-------cCCCEEEEEeC
Q psy226          151 VQDIAFDQSGKLLVSCSADMSLKLWDMSTY-------Q-----CLKTMQG-HDHNVTGVAFL-------PNSDFVLSASR  210 (406)
Q Consensus       151 V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~-------~-----~~~~~~~-h~~~v~~~~~~-------p~~~~l~s~s~  210 (406)
                      ...+.|+|||.-|++-+.|..+.+|++..-       .     ....++- ....|...+|-       |+.+++++.++
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            346889999999999999999999987420       0     0011111 12345555554       56789999999


Q ss_pred             CCcEEEEEcCCCeEEEEeec--CCcc---EEEEEECCCCCEEEEEeCCCeEEEEeCC-Cccc--eeEEe-----cCCceE
Q psy226          211 DKTIKMWEVATGYCVKTLTG--HREW---VRQIKVSPDGTLLASCSNDHTARVWSLA-TKET--KAELR-----GHDHTV  277 (406)
Q Consensus       211 d~~i~iwd~~~~~~~~~~~~--~~~~---v~~l~~~~~~~~l~s~~~d~~v~vwd~~-~~~~--~~~~~-----~~~~~v  277 (406)
                      |.-|++||.-+|+...++.+  |.+.   ..+++|+|||..|++| ...+|++||+. .+..  .....     +...-+
T Consensus       132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii  210 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII  210 (406)
T ss_pred             cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence            99999999999987766653  4443   3589999999999876 56799999993 3321  11111     235667


Q ss_pred             EEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeC-CC
Q psy226          278 ECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD-DK  356 (406)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~-d~  356 (406)
                      .+++++|.                 +...++.|+.-..+-||.-..+.++..+-+|.+.|+.+.|.++|+.|++|+. |-
T Consensus       211 sc~a~sP~-----------------~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~d  273 (406)
T KOG2919|consen  211 SCFAFSPM-----------------DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDD  273 (406)
T ss_pred             eeeeccCC-----------------CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCC
Confidence            88888885                 3457899999999999998889999999999999999999999999999984 67


Q ss_pred             eEEEEeCCC-Cccceeeccccce-E--EEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          357 TLRVWDTAN-KRNMKTLEAHSHF-V--TSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       357 ~i~vwd~~~-~~~~~~l~~h~~~-v--~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      .|-+||++. ...+..|..|... =  .-.+..|++++||+|+.||.|++||++
T Consensus       274 kIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  274 KILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK  327 (406)
T ss_pred             eEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence            899999975 4567777776541 1  234557999999999999999999975

>KOG0307|consensus

Probab=99.88  E-value=1.5e-22  Score=197.38  Aligned_cols=242  Identities=21%  Similarity=0.334  Sum_probs=197.6

Q ss_pred             CeEEEEEcCCCCE----EEEEeCCCcEEEEEcCC---C---cEEEEecccccCeeeEEECCCCC-EEEEEeCCCcEEEEe
Q psy226          108 PVIKVIFHPVFSL----MASCSEDATIRLWDYET---G---EYERALHGHLDSVQDIAFDQSGK-LLVSCSADMSLKLWD  176 (406)
Q Consensus       108 ~V~~v~~~p~~~~----latgs~dg~v~vwd~~~---~---~~~~~~~~h~~~V~~l~~~~~g~-~l~sgs~d~~i~vwd  176 (406)
                      .-++++|.+.+..    +|.|..||.|.+||...   +   ..+.+...|++.|..+.|++... +||+|++||.|.|||
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD  145 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD  145 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence            4568899888765    99999999999999654   1   23455678999999999999755 999999999999999


Q ss_pred             CCCCeEEEEE--ecCCcceEEEEEecC-CCEEEEEeCCCcEEEEEcCCCeEEEEeecCCc--cEEEEEECCCC-CEEEEE
Q psy226          177 MSTYQCLKTM--QGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVATGYCVKTLTGHRE--WVRQIKVSPDG-TLLASC  250 (406)
Q Consensus       177 ~~~~~~~~~~--~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~-~~l~s~  250 (406)
                      +.+.+.-.+.  ......|.+++|+.. .+.|++++.+|.+.|||++..+.+-.+..+..  .+..+.|+|+. ..++++
T Consensus       146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~A  225 (1049)
T KOG0307|consen  146 LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVA  225 (1049)
T ss_pred             cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeee
Confidence            9864432222  113467999999864 35788999999999999998877766665544  46789999986 456666


Q ss_pred             eCC---CeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE
Q psy226          251 SND---HTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL  326 (406)
Q Consensus       251 ~~d---~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~  326 (406)
                      +.|   -.|.+||++.. .+.+++.+|...|.++.|++.                 +..++++++.|+.|.+||..+++.
T Consensus       226 s~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~-----------------D~~lllSsgkD~~ii~wN~~tgEv  288 (1049)
T KOG0307|consen  226 SGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ-----------------DPRLLLSSGKDNRIICWNPNTGEV  288 (1049)
T ss_pred             cCCCCCceeEeecccccCCchhhhcccccceeeeccCCC-----------------CchhhhcccCCCCeeEecCCCceE
Confidence            655   36899999864 456778899999999999984                 457899999999999999999999


Q ss_pred             EEEEeCCCcCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC
Q psy226          327 LFTLIGHDNWVRGVTFHPGGK-YLVSCGDDKTLRVWDTANK  366 (406)
Q Consensus       327 ~~~~~~h~~~v~~l~~s~~g~-~l~sgs~d~~i~vwd~~~~  366 (406)
                      +..+....+|+..+.|+|... .+++++-||.|.|+.+...
T Consensus       289 l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  289 LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence            999999999999999999775 6778899999999998654

>KOG1007|consensus

Probab=99.88  E-value=5.8e-21  Score=159.87  Aligned_cols=258  Identities=23%  Similarity=0.432  Sum_probs=193.3

Q ss_pred             CCcEEEEEcCCC--cE-EEEecccccCeeeEEECCCC-CEEEEEeCC-------CcEEEEeCCC---------CeEEEEE
Q psy226          127 DATIRLWDYETG--EY-ERALHGHLDSVQDIAFDQSG-KLLVSCSAD-------MSLKLWDMST---------YQCLKTM  186 (406)
Q Consensus       127 dg~v~vwd~~~~--~~-~~~~~~h~~~V~~l~~~~~g-~~l~sgs~d-------~~i~vwd~~~---------~~~~~~~  186 (406)
                      |+.|.+-++..+  ++ .+.+..|.+.|..++-+|.. +.|+++.++       ..+-||.+..         .+++..+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            556666655443  22 24466688899999999965 456666543       2477998753         2333444


Q ss_pred             e-cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeE-EEEe-----ecCCccEEEEEECC--CCCEEEEEeCCCeEE
Q psy226          187 Q-GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYC-VKTL-----TGHREWVRQIKVSP--DGTLLASCSNDHTAR  257 (406)
Q Consensus       187 ~-~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~-~~~~-----~~~~~~v~~l~~~~--~~~~l~s~~~d~~v~  257 (406)
                      . .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+     .++....++-+|+|  +|+.+++. .|+++.
T Consensus       119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~  196 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ  196 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence            3 3445899999999999888765 88999999987655 2222     23455677788998  67777665 689999


Q ss_pred             EEeCCCccceeEE-ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC-eEEEEEeCCCc
Q psy226          258 VWSLATKETKAEL-RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG-SLLFTLIGHDN  335 (406)
Q Consensus       258 vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~-~~~~~~~~h~~  335 (406)
                      .||+++......+ ..|...|..+.|.|.                 ...+|++|++||.|||||.+.. .++..+.+|..
T Consensus       197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpn-----------------kq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH  259 (370)
T KOG1007|consen  197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPN-----------------KQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH  259 (370)
T ss_pred             EEEccchhhhcchhhhhcceeeeccCCCC-----------------ceEEEEEcCCCccEEEEeccCCCccccccCCCce
Confidence            9999987655443 478889999999985                 3568999999999999999864 57889999999


Q ss_pred             CEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCC-----------------------------ccceeeccccceEEEEEEe
Q psy226          336 WVRGVTFHPG-GKYLVSCGDDKTLRVWDTANK-----------------------------RNMKTLEAHSHFVTSLDFH  385 (406)
Q Consensus       336 ~v~~l~~s~~-g~~l~sgs~d~~i~vwd~~~~-----------------------------~~~~~l~~h~~~v~~l~~~  385 (406)
                      ||.+|.|+|. .+.|++||.|..|.+|....-                             -.+.++..|...|++++|+
T Consensus       260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS  339 (370)
T KOG1007|consen  260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS  339 (370)
T ss_pred             EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence            9999999995 577889999999999963210                             0133566799999999999


Q ss_pred             CCCCEE-EEeeCCCeEEEe
Q psy226          386 RAHPYV-VTGSVDKTVKVW  403 (406)
Q Consensus       386 ~~~~~l-~sgs~Dg~v~iw  403 (406)
                      .-.+++ ||-|.||.+.|=
T Consensus       340 sadPWiFASLSYDGRviIs  358 (370)
T KOG1007|consen  340 SADPWIFASLSYDGRVIIS  358 (370)
T ss_pred             cCCCeeEEEeccCceEEee
Confidence            988865 888999998763

>KOG1009|consensus

Probab=99.88  E-value=5e-21  Score=167.21  Aligned_cols=263  Identities=25%  Similarity=0.340  Sum_probs=190.2

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--------C-----C---cEEEEecccccCeeeEEECCCCCEEE
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYE--------T-----G---EYERALHGHLDSVQDIAFDQSGKLLV  164 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~--------~-----~---~~~~~~~~h~~~V~~l~~~~~g~~l~  164 (406)
                      .|..|...|++|.|+|+|.+||+|+.+|.|.+|-..        +     .   ...+.+.+|...|..++|+|++.+++
T Consensus        60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~  139 (434)
T KOG1009|consen   60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV  139 (434)
T ss_pred             cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence            578999999999999999999999999999999755        2     1   13456789999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee--------c------
Q psy226          165 SCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT--------G------  230 (406)
Q Consensus       165 sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--------~------  230 (406)
                      +|+.|.++++||+..|+....+.+|.+.+..++|.|-++++++-+.|...+.+.+.....++...        +      
T Consensus       140 s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~  219 (434)
T KOG1009|consen  140 SGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK  219 (434)
T ss_pred             eeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence            99999999999999999999999999999999999999999999999877666654322211110        0      


Q ss_pred             -----C----CccEEEEEECCCCCEEEEEeC----CC-----eEEEEeCCC-ccceeEEecCCceEEEEEeCCCCCccc-
Q psy226          231 -----H----REWVRQIKVSPDGTLLASCSN----DH-----TARVWSLAT-KETKAELRGHDHTVECVAWAPGVASES-  290 (406)
Q Consensus       231 -----~----~~~v~~l~~~~~~~~l~s~~~----d~-----~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~-  290 (406)
                           |    ....+.++|+|+|.++++...    ++     +.++++-.. .++...+.....++..+.++|-..... 
T Consensus       220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp  299 (434)
T KOG1009|consen  220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRP  299 (434)
T ss_pred             eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecc
Confidence                 1    124567899999999887532    22     234444321 233444555555556666665311100 


Q ss_pred             cccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy226          291 ISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       291 ~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~-h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~  365 (406)
                      .+..... ..-+-+..++.++. +.|.+||..+..++....+ |-..++.++|+++|.+|+..|.||...+-.+..
T Consensus       300 ~~~~~~~-~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~  373 (434)
T KOG1009|consen  300 LSSEKFL-FVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP  373 (434)
T ss_pred             ccccccc-cccccceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence            0000000 00012345666665 4699999998877766654 788899999999999999999999877765544

>KOG1334|consensus

Probab=99.88  E-value=7e-22  Score=176.15  Aligned_cols=287  Identities=24%  Similarity=0.381  Sum_probs=221.7

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-cccccCeeeEEECCC--CCEEEEEeCCCcEEEEeC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERAL-HGHLDSVQDIAFDQS--GKLLVSCSADMSLKLWDM  177 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~--g~~l~sgs~d~~i~vwd~  177 (406)
                      .|.+|.+.|+.|.|+..|..|++||.|..|.+||+..+.....+ .||...|.--.|-|.  ..-+++++.||.|++=.+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            57899999999999999999999999999999999988765554 478888877778764  357899999999998765


Q ss_pred             C-CCeE--EEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEEee---cCCc---cEEEEEECCCCC-E
Q psy226          178 S-TYQC--LKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKTLT---GHRE---WVRQIKVSPDGT-L  246 (406)
Q Consensus       178 ~-~~~~--~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~---~~~~---~v~~l~~~~~~~-~  246 (406)
                      . ++.+  .+.+..|.++|.-++.-|+.. -+.+++.|+.+.-.|++++.....+.   .+..   ....++.+|... .
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~  296 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE  296 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence            4 2222  345567899999999999764 68899999999999998875433332   2222   456888888654 8


Q ss_pred             EEEEeCCCeEEEEeCCCccce------eEEec------CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC
Q psy226          247 LASCSNDHTARVWSLATKETK------AELRG------HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK  314 (406)
Q Consensus       247 l~s~~~d~~v~vwd~~~~~~~------~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  314 (406)
                      +++|+.|..+++||.+.-...      ..+..      ..-.|++++|+.+                  +.-++++..|-
T Consensus       297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~------------------~sElLaSYnDe  358 (559)
T KOG1334|consen  297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD------------------GSELLASYNDE  358 (559)
T ss_pred             cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC------------------ccceeeeeccc
Confidence            999999999999998753221      11111      1234677777642                  33466777888


Q ss_pred             cEEEEECC--CC----------eEEEE-EeCCCc--CEEEEEE-cCCCCEEEEEeCCCeEEEEeCCCCccceeeccccce
Q psy226          315 TIKLWDVG--SG----------SLLFT-LIGHDN--WVRGVTF-HPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF  378 (406)
Q Consensus       315 ~i~lwd~~--~~----------~~~~~-~~~h~~--~v~~l~~-s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~  378 (406)
                      .|+++.-.  .|          ..+.. ++||.+  .|.++-| -|...|++|||+=|.|.||+-.+++.++-+.+-.+.
T Consensus       359 ~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~V  438 (559)
T KOG1334|consen  359 DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHV  438 (559)
T ss_pred             ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccce
Confidence            89999532  22          22333 788864  4667754 688999999999999999999999999999887779


Q ss_pred             EEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          379 VTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       379 v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |+||.-||.-++|||+|.|.-||||..
T Consensus       439 VNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  439 VNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             EeccCCCCCCchhhccCCccceeeecC
Confidence            999999999999999999999999963

>KOG1034|consensus

Probab=99.88  E-value=2.6e-21  Score=164.67  Aligned_cols=243  Identities=24%  Similarity=0.385  Sum_probs=185.0

Q ss_pred             cCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCC-CEEEEEeCCCcEEEEeCC
Q psy226          104 GHRSPVIKVIFHPV----FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG-KLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       104 ~h~~~V~~v~~~p~----~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g-~~l~sgs~d~~i~vwd~~  178 (406)
                      .|...-+.++|.-+    .+++|.|+.-|.|+|.|+.++++...+.+|...|+.+.+.|+. +++++||.|.+||+|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            35666777787644    4689999999999999999999999999999999999999975 689999999999999999


Q ss_pred             CCeEEEEE---ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeE------E-------------------E---E
Q psy226          179 TYQCLKTM---QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYC------V-------------------K---T  227 (406)
Q Consensus       179 ~~~~~~~~---~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~------~-------------------~---~  227 (406)
                      +..|+..+   .||.+.|.++.|+++|.++++++.|.++++|++...+.      .                   .   +
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst  246 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST  246 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence            99998766   57999999999999999999999999999999873210      0                   0   1


Q ss_pred             eecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCC-CccceeE-------------EecCCceEEEEEeCCCCCcccccc
Q psy226          228 LTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA-TKETKAE-------------LRGHDHTVECVAWAPGVASESISE  293 (406)
Q Consensus       228 ~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~-~~~~~~~-------------~~~~~~~v~~~~~~~~~~~~~~~~  293 (406)
                      -.-|+.+|-|+.|-  |+++++=|-++.|..|... -.+....             +.-....+.-+.|.-         
T Consensus       247 ~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~---------  315 (385)
T KOG1034|consen  247 TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF---------  315 (385)
T ss_pred             cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee---------
Confidence            12355555555553  6789999999999999872 1111111             111122222333221         


Q ss_pred             ccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEE--EEEeC--CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          294 AAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLL--FTLIG--HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       294 ~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~--~~~~~--h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                             +..++.||.|...|.|.+||++...+.  .++..  ....|+..+|+.||.+|+...+|++|.-||.-
T Consensus       316 -------d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  316 -------DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             -------cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence                   224678999999999999999876542  12221  24579999999999999999999999999853

>KOG4227|consensus

Probab=99.88  E-value=1.2e-20  Score=164.20  Aligned_cols=284  Identities=15%  Similarity=0.254  Sum_probs=210.7

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC------cEEEEe-cccccCeeeEEECCCCCEEEEEeCCCcEE
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG------EYERAL-HGHLDSVQDIAFDQSGKLLVSCSADMSLK  173 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~------~~~~~~-~~h~~~V~~l~~~~~g~~l~sgs~d~~i~  173 (406)
                      .+.+|.+.|+++.|+..+.+||+|+.|..+++|.+...      +.+... +.|...|.|++|+...+++++|..+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            46789999999999999999999999999999987532      233333 24668999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEecCC---cceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe-E--EEEeecCCccEEEEEECCCC-CE
Q psy226          174 LWDMSTYQCLKTMQGHD---HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY-C--VKTLTGHREWVRQIKVSPDG-TL  246 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~-~--~~~~~~~~~~v~~l~~~~~~-~~  246 (406)
                      +-|+++.+.+..+. |+   +.|+.+..+|..+.+++.+.++.|.+||.+... .  ...+.........+.|+|.. .+
T Consensus       131 ~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  131 KHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             eeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            99999988776554 43   489999999999999999999999999997654 1  22222334456778899854 67


Q ss_pred             EEEEeCCCeEEEEeCCCcccee----EEecCC---ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEE
Q psy226          247 LASCSNDHTARVWSLATKETKA----ELRGHD---HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLW  319 (406)
Q Consensus       247 l~s~~~d~~v~vwd~~~~~~~~----~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lw  319 (406)
                      |++.+.-+.+-+||.+......    .+.+..   ..-..+.|+|                  +|..|++--....-.+|
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~------------------~G~Q~msiRR~~~P~~~  271 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP------------------SGNQFMSIRRGKCPLYF  271 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC------------------CCCeehhhhccCCCEEe
Confidence            8889999999999997653211    111111   1123455665                  35555555555555677


Q ss_pred             ECCCCeEEEEEeCCC-------cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------C-------------ccc
Q psy226          320 DVGSGSLLFTLIGHD-------NWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN----------K-------------RNM  369 (406)
Q Consensus       320 d~~~~~~~~~~~~h~-------~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~----------~-------------~~~  369 (406)
                      |+-+.++...-..|.       ..+.+++|--+ ..+++||++-.|++|.+..          +             +.+
T Consensus       272 D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~  350 (609)
T KOG4227|consen  272 DFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKEL  350 (609)
T ss_pred             eeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheeccee
Confidence            877655432222232       24667788654 4599999999999997631          1             123


Q ss_pred             eeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          370 KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       370 ~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      ..|.+|...++.+.|+|...+|++.+....+|||.
T Consensus       351 ~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  351 TVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             EEEecccccccceeecCCcceEeccchhhheeccc
Confidence            45788999999999999999999999999999995

>KOG1587|consensus

Probab=99.86  E-value=1.2e-19  Score=172.41  Aligned_cols=261  Identities=17%  Similarity=0.234  Sum_probs=195.1

Q ss_pred             CCcEEEEEcCCCcEEEEecccccCeeeEEECCC-CCEEEEEeCCCcEEEEeCCCCeE--E----EEEecCCcceEEEEEe
Q psy226          127 DATIRLWDYETGEYERALHGHLDSVQDIAFDQS-GKLLVSCSADMSLKLWDMSTYQC--L----KTMQGHDHNVTGVAFL  199 (406)
Q Consensus       127 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~vwd~~~~~~--~----~~~~~h~~~v~~~~~~  199 (406)
                      ++.+.||++.+.........-...|.++.|+|. ..+|+.|+.+|.|.+||+..+..  .    .....|..++..+.|.
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            347999999886322222335678999999995 56888888999999999976543  1    1234588899999998


Q ss_pred             cCCC--EEEEEeCCCcEEEEEcCCCeE-E-----EEee------cCCccEEEEEECC-CCCEEEEEeCCCeEEEEeCCCc
Q psy226          200 PNSD--FVLSASRDKTIKMWEVATGYC-V-----KTLT------GHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATK  264 (406)
Q Consensus       200 p~~~--~l~s~s~d~~i~iwd~~~~~~-~-----~~~~------~~~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~  264 (406)
                      .+..  -++++|.||.|..|+++.-.. .     ....      .....+++++|.+ +-..|+.|+.+|.|..-+-...
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            7554  499999999999998764322 1     1111      1123578889987 4578999999999987433221


Q ss_pred             --------cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC-CCeEEEEEeCCCc
Q psy226          265 --------ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG-SGSLLFTLIGHDN  335 (406)
Q Consensus       265 --------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~-~~~~~~~~~~h~~  335 (406)
                              +....+..|..+|.++.++|-                 ..+++++++ |-+++||... ...++..+..+..
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF-----------------~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~  442 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPF-----------------YPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD  442 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCC-----------------ccceeeeec-cceeEeccccCCCCcchhhhhccc
Confidence                    123355678899999999884                 234566666 9999999987 6777888888888


Q ss_pred             CEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC--ccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          336 WVRGVTFHPGGK-YLVSCGDDKTLRVWDTANK--RNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       336 ~v~~l~~s~~g~-~l~sgs~d~~i~vwd~~~~--~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .|++++|||... .++++..||.|.+||+...  ..+.+...+....+.+.|++.++.|+.|...|++.+|++
T Consensus       443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence            899999999764 5677888999999998643  445555556677888899999999999999999999987

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.86  E-value=1.5e-18  Score=160.39  Aligned_cols=264  Identities=14%  Similarity=0.300  Sum_probs=176.5

Q ss_pred             EEEEeCCCcEEEEEcCC-Cc--EEEEecccccCeeeEEECCCCCEEEEEe-CCCcEEEEeCC-CCeE--EEEEecCCcce
Q psy226          121 MASCSEDATIRLWDYET-GE--YERALHGHLDSVQDIAFDQSGKLLVSCS-ADMSLKLWDMS-TYQC--LKTMQGHDHNV  193 (406)
Q Consensus       121 latgs~dg~v~vwd~~~-~~--~~~~~~~h~~~V~~l~~~~~g~~l~sgs-~d~~i~vwd~~-~~~~--~~~~~~h~~~v  193 (406)
                      +++...|+.|++||+.+ ++  ....+. +.+....++++|++++|++++ .++.|.+|++. +++.  ..... .....
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p   82 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP   82 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence            44557799999999964 44  334443 345677899999999987765 57889999986 3332  22221 23356


Q ss_pred             EEEEEecCCCEEEEEeC-CCcEEEEEcCC-Ce---EEEEeecCCccEEEEEECCCCCEEEE-EeCCCeEEEEeCCCccce
Q psy226          194 TGVAFLPNSDFVLSASR-DKTIKMWEVAT-GY---CVKTLTGHREWVRQIKVSPDGTLLAS-CSNDHTARVWSLATKETK  267 (406)
Q Consensus       194 ~~~~~~p~~~~l~s~s~-d~~i~iwd~~~-~~---~~~~~~~~~~~v~~l~~~~~~~~l~s-~~~d~~v~vwd~~~~~~~  267 (406)
                      ..++|+|+++++++++. ++.|.+|++.+ +.   .+..+. +......++++|+|+++++ ...++.|.+||+.+...+
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l  161 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL  161 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence            78999999998888764 88999999963 32   223332 2234567889999988855 446799999999763221


Q ss_pred             eE-----Ee-cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC-CCcEEEEECCC--Ce--EEEEEeC----
Q psy226          268 AE-----LR-GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR-DKTIKLWDVGS--GS--LLFTLIG----  332 (406)
Q Consensus       268 ~~-----~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~lwd~~~--~~--~~~~~~~----  332 (406)
                      ..     .. ........++|+|                  ++.+++++.. ++.|.+||+..  +.  .+..+..    
T Consensus       162 ~~~~~~~~~~~~g~~p~~~~~~p------------------dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~  223 (330)
T PRK11028        162 VAQEPAEVTTVEGAGPRHMVFHP------------------NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD  223 (330)
T ss_pred             cccCCCceecCCCCCCceEEECC------------------CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence            10     00 0112234566766                  4677877766 89999999973  32  2333322    


Q ss_pred             --CCcCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCccceeecccc---ceEEEEEEeCCCCEEEEeeC-CCeEEEeec
Q psy226          333 --HDNWVRGVTFHPGGKYLVSCG-DDKTLRVWDTANKRNMKTLEAHS---HFVTSLDFHRAHPYVVTGSV-DKTVKVWEC  405 (406)
Q Consensus       333 --h~~~v~~l~~s~~g~~l~sgs-~d~~i~vwd~~~~~~~~~l~~h~---~~v~~l~~~~~~~~l~sgs~-Dg~v~iw~~  405 (406)
                        +..+...+.|+|+|++++++. .++.|.+|++.......++..+.   .....++|+|++++|+++.. +++|.+|+.
T Consensus       224 ~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        224 FSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence              122445789999999998875 47899999986433222222221   23467899999999987664 899999975

>KOG0303|consensus

Probab=99.86  E-value=3.9e-20  Score=161.07  Aligned_cols=205  Identities=25%  Similarity=0.395  Sum_probs=162.5

Q ss_pred             EecccccCeeeEEECCC-CCEEEEEeCCCcEEEEeCCCC-------eEEEEEecCCcceEEEEEecCC-CEEEEEeCCCc
Q psy226          143 ALHGHLDSVQDIAFDQS-GKLLVSCSADMSLKLWDMSTY-------QCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKT  213 (406)
Q Consensus       143 ~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~  213 (406)
                      .+.||+.+|.+++|+|- ...||+||.|.+|.||++...       +.+..+.||...|.-+.|+|.. +.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            35699999999999994 568999999999999998642       3467889999999999999965 57899999999


Q ss_pred             EEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCce-EEEEEeCCCCCccccc
Q psy226          214 IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHT-VECVAWAPGVASESIS  292 (406)
Q Consensus       214 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~  292 (406)
                      |.+||+.+|..+.++. |.+.|.+++|+.||.+|++.+.|+.|||||.++++.+.+..+|++. -..+.|..        
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~--------  226 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA--------  226 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec--------
Confidence            9999999999888887 9999999999999999999999999999999999999888778743 22333432        


Q ss_pred             cccCCCCCCCCCCEEEEEe---CCCcEEEEECCCCe---EEEEEeCCCcCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCC
Q psy226          293 EAAGRPPGQGGGPYLATGS---RDKTIKLWDVGSGS---LLFTLIGHDNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTAN  365 (406)
Q Consensus       293 ~~~~~~~~~~~~~~l~s~~---~d~~i~lwd~~~~~---~~~~~~~h~~~v~~l~~s~~g~~l~-sgs~d~~i~vwd~~~  365 (406)
                                ++.++-+|.   .++++-+||..+-.   ...++.. ++.|.-=-|+|+...|. +|-.|+.||.|.+..
T Consensus       227 ----------~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  227 ----------SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             ----------cCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence                      345444443   47789999875432   2333433 34455456788888775 455799999998865


Q ss_pred             Cc
Q psy226          366 KR  367 (406)
Q Consensus       366 ~~  367 (406)
                      ..
T Consensus       296 d~  297 (472)
T KOG0303|consen  296 EP  297 (472)
T ss_pred             CC
Confidence            43

>KOG0649|consensus

Probab=99.85  E-value=1.8e-18  Score=141.71  Aligned_cols=277  Identities=15%  Similarity=0.210  Sum_probs=189.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCC---------Cc-EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYET---------GE-YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~---------~~-~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      |++-+++|.+++|+.|+.+|.|.+..+..         ++ .....++|.++|+.++|.  ..+|++|+ ||.|+=|...
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence            55567899999999999999999998653         12 233457899999999998  35777765 5999999775


Q ss_pred             CCeE------EEEE--ec-----CCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCC
Q psy226          179 TYQC------LKTM--QG-----HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT  245 (406)
Q Consensus       179 ~~~~------~~~~--~~-----h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  245 (406)
                      ....      +..+  .-     .-..|+++...|..+-++.++.|+.+..||+++|+..+.++||++++.++.-.....
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~  169 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG  169 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence            3221      0000  11     124688999999888888888999999999999999999999999999999866666


Q ss_pred             EEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe
Q psy226          246 LLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS  325 (406)
Q Consensus       246 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~  325 (406)
                      .+++|+.||++|+||.++.+.+..+.....+- ++  .|+... -|...      ..+..++++|+ ...+.+|++++..
T Consensus       170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~-~l--Rp~~g~-wigal------a~~edWlvCGg-Gp~lslwhLrsse  238 (325)
T KOG0649|consen  170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN-LL--RPDWGK-WIGAL------AVNEDWLVCGG-GPKLSLWHLRSSE  238 (325)
T ss_pred             ceeecCCCccEEEEeccccceeEEeccccChh-hc--CcccCc-eeEEE------eccCceEEecC-CCceeEEeccCCC
Confidence            79999999999999999988877665433211 00  111000 00000      01234666654 4569999999877


Q ss_pred             EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCC-CEEEEeeCCCeEEEe
Q psy226          326 LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAH-PYVVTGSVDKTVKVW  403 (406)
Q Consensus       326 ~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~-~~l~sgs~Dg~v~iw  403 (406)
                      +...|. -...+..+.|..  +.+++++..+.|.-|.+. +..-......+...++..|+..- ++|-.++....+.|+
T Consensus       239 ~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  239 STCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ceEEEe-cccceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            665543 233477777754  578889988899999764 32222233333345555554332 345556666666665

>KOG1310|consensus

Probab=99.85  E-value=6.8e-20  Score=165.72  Aligned_cols=165  Identities=23%  Similarity=0.333  Sum_probs=132.9

Q ss_pred             CceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-cccccCeeeEEECCC--CCEEEEEeCCCcEE
Q psy226           97 PEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERAL-HGHLDSVQDIAFDQS--GKLLVSCSADMSLK  173 (406)
Q Consensus        97 ~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~--g~~l~sgs~d~~i~  173 (406)
                      .....|.||.+.|+|++|+.+|.+|++||.|-.+.|||....+....+ .||+..|.++.|-|.  .+.+++|..|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            334468999999999999999999999999999999998877766665 489999999999884  56899999999999


Q ss_pred             EEeCCCC----------eEEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCe-EEEE---------eecCC
Q psy226          174 LWDMSTY----------QCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGY-CVKT---------LTGHR  232 (406)
Q Consensus       174 vwd~~~~----------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~-~~~~---------~~~~~  232 (406)
                      ++|+...          ....-+..|...|..++--|++ +.+.+++.||+|+.+|++... |-..         +.+..
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            9999741          2234456788889899999988 789999999999999997632 1111         11122


Q ss_pred             ccEEEEEECCC-CCEEEEEeCCCeEEEEeC
Q psy226          233 EWVRQIKVSPD-GTLLASCSNDHTARVWSL  261 (406)
Q Consensus       233 ~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~  261 (406)
                      -...++.++|. ..+|+.|+.|-..++||.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            34568899995 468899999999999994

>KOG1445|consensus

Probab=99.85  E-value=4.5e-19  Score=162.95  Aligned_cols=150  Identities=23%  Similarity=0.435  Sum_probs=119.7

Q ss_pred             EEECC-CCCEEEEEeCCCeEEEEeCCCc-------cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE
Q psy226          238 IKVSP-DGTLLASCSNDHTARVWSLATK-------ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT  309 (406)
Q Consensus       238 l~~~~-~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  309 (406)
                      +.|+| |...||.++.||.|++|.+...       .+...+..|...|.++.|+|-.                 ...|++
T Consensus       633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA-----------------advLa~  695 (1012)
T KOG1445|consen  633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA-----------------ADVLAV  695 (1012)
T ss_pred             cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh-----------------hhHhhh
Confidence            44554 4456899999999999998653       3456788999999999999953                 346999


Q ss_pred             EeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-cceeeccc-cceEEEEEEeCC
Q psy226          310 GSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR-NMKTLEAH-SHFVTSLDFHRA  387 (406)
Q Consensus       310 ~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~-~~~~l~~h-~~~v~~l~~~~~  387 (406)
                      ++.|.+|++||+++++....+.+|.+.|.+++|||+|+.+++.+.||+|+||+.+.+. .+++-++- ...-..+.|.-+
T Consensus       696 asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacd  775 (1012)
T KOG1445|consen  696 ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACD  775 (1012)
T ss_pred             hhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEec
Confidence            9999999999999999999999999999999999999999999999999999987653 34333221 112345779999


Q ss_pred             CCEEEEeeCCC----eEEEee
Q psy226          388 HPYVVTGSVDK----TVKVWE  404 (406)
Q Consensus       388 ~~~l~sgs~Dg----~v~iw~  404 (406)
                      |+++++.|.|.    .|.+||
T Consensus       776 gr~viv~Gfdk~SeRQv~~Y~  796 (1012)
T KOG1445|consen  776 GRIVIVVGFDKSSERQVQMYD  796 (1012)
T ss_pred             CcEEEEecccccchhhhhhhh
Confidence            99999888775    355554

>KOG1963|consensus

Probab=99.85  E-value=1.3e-18  Score=165.90  Aligned_cols=294  Identities=19%  Similarity=0.266  Sum_probs=205.8

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC--C--cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYET--G--EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~--~--~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      .|..+++|+++||.++++|+|..||.|.+|.-..  +  .-...++-|.++|++++|+++|.+|++|+..+.+.+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4778899999999999999999999999995332  1  23456788999999999999999999999999999999998


Q ss_pred             CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeec-----------CCccEEEEEECCCCCEEE
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG-----------HREWVRQIKVSPDGTLLA  248 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-----------~~~~v~~l~~~~~~~~l~  248 (406)
                      ++ .+-+..-..+|..+.++||+++.+..-.|+.|.+....+.....++.|           .++..+.++++|.-+.++
T Consensus       283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v  361 (792)
T KOG1963|consen  283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV  361 (792)
T ss_pred             CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence            87 456666778999999999999988888899999987755433333322           234567889999888889


Q ss_pred             EEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe--------CCC--cEEE
Q psy226          249 SCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS--------RDK--TIKL  318 (406)
Q Consensus       249 s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--------~d~--~i~l  318 (406)
                      -++..|.|.+||+-+...+..+..-     ....+++.....+.  .........|.+++|.-        .||  .+|+
T Consensus       362 ln~~~g~vQ~ydl~td~~i~~~~v~-----~~n~~~~~~n~~v~--itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF  434 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYTDSTIYKLQVC-----DENYSDGDVNIQVG--ITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF  434 (792)
T ss_pred             ecCCCceEEEEeccccceeeeEEEE-----eecccCCcceeEEe--eeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence            9999999999999887766544310     00011110000000  00000011355666643        233  5788


Q ss_pred             EECCCCeEE---E--EEeCCCcCEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCccc----------eeeccccceEEE
Q psy226          319 WDVGSGSLL---F--TLIGHDNWVRGVTFHPG--GKYLVSCGDDKTLRVWDTANKRNM----------KTLEAHSHFVTS  381 (406)
Q Consensus       319 wd~~~~~~~---~--~~~~h~~~v~~l~~s~~--g~~l~sgs~d~~i~vwd~~~~~~~----------~~l~~h~~~v~~  381 (406)
                      |-......-   .  ....|...+...++.+.  ...++++|.||.++||-+...+.+          ..-.-|...+++
T Consensus       435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a  514 (792)
T KOG1963|consen  435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITA  514 (792)
T ss_pred             EEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccc
Confidence            975433222   1  22357776666655442  337899999999999977332211          111136778999


Q ss_pred             EEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          382 LDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       382 l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ++|+.||.+|+ .|.|++|.+||..
T Consensus       515 ~~fs~dGslla-~s~~~~Itiwd~~  538 (792)
T KOG1963|consen  515 LCFSQDGSLLA-VSFDDTITIWDYD  538 (792)
T ss_pred             hhhcCCCcEEE-EecCCEEEEecCC
Confidence            99999997665 6689999999963

>KOG0644|consensus

Probab=99.85  E-value=1.4e-21  Score=184.22  Aligned_cols=238  Identities=28%  Similarity=0.474  Sum_probs=187.8

Q ss_pred             EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEc
Q psy226          140 YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEV  219 (406)
Q Consensus       140 ~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~  219 (406)
                      ..+.+.||...|.|+.|...|.++++|+.|..++||.+++..++....||.+.|+.++.+.+..+++++|.|..|++|.+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            34557799999999999999999999999999999999999999999999999999999988889999999999999999


Q ss_pred             CCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeE---EecC-CceEEEEEeCCCCCcccccccc
Q psy226          220 ATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAE---LRGH-DHTVECVAWAPGVASESISEAA  295 (406)
Q Consensus       220 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~---~~~~-~~~v~~~~~~~~~~~~~~~~~~  295 (406)
                      .++..+..+.+|++.|++++|+|-.    +.+.||++++||.+-...+..   +... ...+.++.+             
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~-------------  324 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF-------------  324 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeec-------------
Confidence            9999999999999999999999954    788999999999871111100   0000 011222222             


Q ss_pred             CCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCccceeecc
Q psy226          296 GRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPG-GKYLVSCGDDKTLRVWDTANKRNMKTLEA  374 (406)
Q Consensus       296 ~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~-g~~l~sgs~d~~i~vwd~~~~~~~~~l~~  374 (406)
                           ..++.-+++++.|+.-+.|.+..-      ..+...+.-+.++.+ ..+.+++-.+..+.+|++.++...+.+.+
T Consensus       325 -----~~~~~~f~Tgs~d~ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g  393 (1113)
T KOG0644|consen  325 -----ENNGDRFLTGSRDGEARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG  393 (1113)
T ss_pred             -----cccccccccccCCcccccchhhHh------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc
Confidence                 224566889999998888875321      122222222222222 24667777888999999999999999999


Q ss_pred             ccceEEEEEEeCCCCEE-EEeeCCCeEEEeec
Q psy226          375 HSHFVTSLDFHRAHPYV-VTGSVDKTVKVWEC  405 (406)
Q Consensus       375 h~~~v~~l~~~~~~~~l-~sgs~Dg~v~iw~~  405 (406)
                      |...+..|.+||.+..+ .+++.||...|||.
T Consensus       394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             cccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence            99999999999988765 68999999999985

>KOG1538|consensus

Probab=99.84  E-value=9.1e-20  Score=168.36  Aligned_cols=240  Identities=22%  Similarity=0.343  Sum_probs=184.8

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      ..+|+||.+-|+||+++.+|..+|+|+.|..|.+|.-.   .+..++ .|++.|.|+.|+|-...|++++-. ..-+|..
T Consensus        46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~  121 (1081)
T KOG1538|consen   46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSP  121 (1081)
T ss_pred             ccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence            44689999999999999999999999999999999743   333443 699999999999999999998764 3567876


Q ss_pred             CCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEE--EEeecCCccEEEEEECCCC-----CEEEEE
Q psy226          178 STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV--KTLTGHREWVRQIKVSPDG-----TLLASC  250 (406)
Q Consensus       178 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~-----~~l~s~  250 (406)
                      ...... .. .....+.+++|..||.+++.|-.||+|.+-+-.....+  ..-.|.+.+|.+++|+|..     ..++..
T Consensus       122 ~qK~V~-K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~  199 (1081)
T KOG1538|consen  122 EQKSVS-KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA  199 (1081)
T ss_pred             hhhhHH-hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE
Confidence            532211 11 12456889999999999999999999999865332222  2233577899999999964     467777


Q ss_pred             eCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy226          251 SNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL  330 (406)
Q Consensus       251 ~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~  330 (406)
                      ....++.++.+... .+..-+.-.....|+.+.|                  +|.|++.|+.|+.+.+|- +.|-.+-++
T Consensus       200 DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisYf~------------------NGEy~LiGGsdk~L~~fT-R~GvrLGTv  259 (1081)
T KOG1538|consen  200 DWGQTLSFYQLSGK-QIGKDRALNFDPCCISYFT------------------NGEYILLGGSDKQLSLFT-RDGVRLGTV  259 (1081)
T ss_pred             eccceeEEEEecce-eecccccCCCCchhheecc------------------CCcEEEEccCCCceEEEe-ecCeEEeec
Confidence            78888888877532 2221222233344566655                  689999999999999995 567777788


Q ss_pred             eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          331 IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       331 ~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      ...+.||..++..|++++++.|+.||+|-.|++-
T Consensus       260 g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  260 GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             cccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            7788999999999999999999999999999863

>KOG1240|consensus

Probab=99.84  E-value=1.4e-18  Score=170.44  Aligned_cols=304  Identities=20%  Similarity=0.294  Sum_probs=209.4

Q ss_pred             CCCCcCCCCCCceEEeccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCc-------EEEEecccccCeeeEEECC
Q psy226           87 RSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF-SLMASCSEDATIRLWDYETGE-------YERALHGHLDSVQDIAFDQ  158 (406)
Q Consensus        87 ~~~~~~~~~~~~~~~l~~h~~~V~~v~~~p~~-~~latgs~dg~v~vwd~~~~~-------~~~~~~~h~~~V~~l~~~~  158 (406)
                      ..+..|.|+......|..|...|..++.++.. .+++|||.||+|++||...-.       ...++.....++.++...+
T Consensus      1029 ~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1029 SPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             CCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence            34567888888888899999999999988765 999999999999999975421       1223333457899999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCe-------EEEEEecCC-cceE-EEEEec-CCC-EEEEEeCCCcEEEEEcCCCeEEEE
Q psy226          159 SGKLLVSCSADMSLKLWDMSTYQ-------CLKTMQGHD-HNVT-GVAFLP-NSD-FVLSASRDKTIKMWEVATGYCVKT  227 (406)
Q Consensus       159 ~g~~l~sgs~d~~i~vwd~~~~~-------~~~~~~~h~-~~v~-~~~~~p-~~~-~l~s~s~d~~i~iwd~~~~~~~~~  227 (406)
                      .|+.+|.++.||.|++.++.-..       +.+....+. +.+. .-+|.. .+. .++.+..-+.|..||++......+
T Consensus      1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred             CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence            99999999999999999986421       112222222 2232 233332 223 677788889999999987654444


Q ss_pred             ee--cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe-cCCceEEEEEeCCCCCccccccccCCCCCCCCC
Q psy226          228 LT--GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR-GHDHTVECVAWAPGVASESISEAAGRPPGQGGG  304 (406)
Q Consensus       228 ~~--~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (406)
                      ++  ...+.|++++.+|.+++++.|+..|.+.+||++-+.++.... ++..++..+..+|-..              ...
T Consensus      1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~--------------~~S 1254 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP--------------QES 1254 (1431)
T ss_pred             hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC--------------CCc
Confidence            33  334679999999999999999999999999999877665432 2335566666555321              012


Q ss_pred             CEEEEEe-CCCcEEEEECCCCeEEEEEeCCC-------------------cCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          305 PYLATGS-RDKTIKLWDVGSGSLLFTLIGHD-------------------NWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       305 ~~l~s~~-~d~~i~lwd~~~~~~~~~~~~h~-------------------~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      ..+.+++ ..+.|.+|++.+|.+-..+....                   -......+...+.++.+|+.|..||.||..
T Consensus      1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            2333444 57789999999887766554321                   011223344446788999999999999964


Q ss_pred             CCccc-----------------------------ee-------------------e--------ccccceEEEEEEeCCC
Q psy226          365 NKRNM-----------------------------KT-------------------L--------EAHSHFVTSLDFHRAH  388 (406)
Q Consensus       365 ~~~~~-----------------------------~~-------------------l--------~~h~~~v~~l~~~~~~  388 (406)
                      .....                             ..                   +        ..|.+.|+++++-...
T Consensus      1335 ~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~ 1414 (1431)
T KOG1240|consen 1335 RPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSE 1414 (1431)
T ss_pred             CcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccC
Confidence            32211                             00                   0        1355667777765443


Q ss_pred             -CEEEEeeCCCeEEEee
Q psy226          389 -PYVVTGSVDKTVKVWE  404 (406)
Q Consensus       389 -~~l~sgs~Dg~v~iw~  404 (406)
                       .+|++++.||.|+||.
T Consensus      1415 q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1415 QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             ccEEEEecCCCeeeecC
Confidence             5899999999999994

>KOG0290|consensus

Probab=99.84  E-value=4.5e-18  Score=142.80  Aligned_cols=287  Identities=18%  Similarity=0.303  Sum_probs=198.7

Q ss_pred             CCCCceEEeccCCCCeEEEEEcC--C-CCEEEEEeC----CCcEEEEEc--CCCcEEEEe-cccccCeeeEEECCCC---
Q psy226           94 PRAPEKFALSGHRSPVIKVIFHP--V-FSLMASCSE----DATIRLWDY--ETGEYERAL-HGHLDSVQDIAFDQSG---  160 (406)
Q Consensus        94 ~~~~~~~~l~~h~~~V~~v~~~p--~-~~~latgs~----dg~v~vwd~--~~~~~~~~~-~~h~~~V~~l~~~~~g---  160 (406)
                      ++..+.+.+..+ -+++++.|+.  + ...||.||.    .+.|.|-.+  .+++....- ..|.-+++.+-|.|+.   
T Consensus        33 ~r~~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~  111 (364)
T KOG0290|consen   33 PRRKEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGV  111 (364)
T ss_pred             cccceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCcccc
Confidence            444555555443 3678888883  3 347888864    445665543  344443222 3578899999999976   


Q ss_pred             --CEEEEEeCCCcEEEEeCCC--Ce--EEEE-----EecCCcceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCe---EE
Q psy226          161 --KLLVSCSADMSLKLWDMST--YQ--CLKT-----MQGHDHNVTGVAFLP-NSDFVLSASRDKTIKMWEVATGY---CV  225 (406)
Q Consensus       161 --~~l~sgs~d~~i~vwd~~~--~~--~~~~-----~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~iwd~~~~~---~~  225 (406)
                        .+|||++  -.+|+|.+..  .+  +...     -..+..++++..|+. +.+++.+.|-|-+..|||++++.   ..
T Consensus       112 ~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk  189 (364)
T KOG0290|consen  112 YPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK  189 (364)
T ss_pred             Ccchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccccee
Confidence              3566543  3699998863  11  1111     123567899999986 55789999999999999999863   35


Q ss_pred             EEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCCccceeEEec---CCceEEEEEeCCCCCccccccccCCCCCC
Q psy226          226 KTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKETKAELRG---HDHTVECVAWAPGVASESISEAAGRPPGQ  301 (406)
Q Consensus       226 ~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  301 (406)
                      ..+-.|...|..++|...+ ..||++|.||.+|+||++..+-...+..   ...+...++|++.                
T Consensus       190 TQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkq----------------  253 (364)
T KOG0290|consen  190 TQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQ----------------  253 (364)
T ss_pred             eEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcC----------------
Confidence            5677899999999999865 5899999999999999987654332221   1234555566542                


Q ss_pred             CCCCEEEEEeCC-CcEEEEECCCC-eEEEEEeCCCcCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcc------ceee
Q psy226          302 GGGPYLATGSRD-KTIKLWDVGSG-SLLFTLIGHDNWVRGVTFHPG-GKYLVSCGDDKTLRVWDTANKRN------MKTL  372 (406)
Q Consensus       302 ~~~~~l~s~~~d-~~i~lwd~~~~-~~~~~~~~h~~~v~~l~~s~~-g~~l~sgs~d~~i~vwd~~~~~~------~~~l  372 (406)
                       +.+|+|+-..| ..|.|.|++.. .++.++.+|...|.+++|.|. ...|.++|+|..+-+||+.....      +..+
T Consensus       254 -DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay  332 (364)
T KOG0290|consen  254 -DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY  332 (364)
T ss_pred             -CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh
Confidence             34567765554 46899999864 578899999999999999996 46799999999999999875322      2222


Q ss_pred             ccccceEEEEEEeCCC-CEEEEeeCCCeEEE
Q psy226          373 EAHSHFVTSLDFHRAH-PYVVTGSVDKTVKV  402 (406)
Q Consensus       373 ~~h~~~v~~l~~~~~~-~~l~sgs~Dg~v~i  402 (406)
                      . -.+.|+.+.|++.. .+++.+. ++++.+
T Consensus       333 ~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  333 T-AGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             h-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            2 34579999999654 5666654 444443

>KOG1007|consensus

Probab=99.84  E-value=5.1e-19  Score=148.32  Aligned_cols=244  Identities=20%  Similarity=0.367  Sum_probs=186.4

Q ss_pred             eccCCCCeEEEEEcCCC-CEEEEEeCC-------CcEEEEEcCCCc---------EEEEec-ccccCeeeEEECCCCCEE
Q psy226          102 LSGHRSPVIKVIFHPVF-SLMASCSED-------ATIRLWDYETGE---------YERALH-GHLDSVQDIAFDQSGKLL  163 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~-~~latgs~d-------g~v~vwd~~~~~---------~~~~~~-~h~~~V~~l~~~~~g~~l  163 (406)
                      +.-|.+.|..++-+|.. ++|+|+-.+       -.+.||.+....         .+..+. .+-+.|.|+.|.|++..|
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kl  138 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKL  138 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCee
Confidence            45577899999999965 466666442       236789875421         122232 455689999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCeE-EEEE-----ecCCcceEEEEEec--CCCEEEEEeCCCcEEEEEcCCCeEEEEee-cCCcc
Q psy226          164 VSCSADMSLKLWDMSTYQC-LKTM-----QGHDHNVTGVAFLP--NSDFVLSASRDKTIKMWEVATGYCVKTLT-GHREW  234 (406)
Q Consensus       164 ~sgs~d~~i~vwd~~~~~~-~~~~-----~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~~  234 (406)
                      ++-. |..|.+|++..... ...+     .+|....++-+|+|  +++.+++ ..|+++..||+++..+...+. .|...
T Consensus       139 asm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~  216 (370)
T KOG1007|consen  139 ASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQR  216 (370)
T ss_pred             EEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcce
Confidence            8765 88999999986544 2222     23677889999998  6666665 468999999999877665553 68888


Q ss_pred             EEEEEECCCCC-EEEEEeCCCeEEEEeCCC-ccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC
Q psy226          235 VRQIKVSPDGT-LLASCSNDHTARVWSLAT-KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR  312 (406)
Q Consensus       235 v~~l~~~~~~~-~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  312 (406)
                      |+.+.|+|+.+ +|++|+.||.|++||.+. ..++.++.+|.+-|.++.|.|.                 ...++++|+.
T Consensus       217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~-----------------hdqLiLs~~S  279 (370)
T KOG1007|consen  217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPE-----------------HDQLILSGGS  279 (370)
T ss_pred             eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCc-----------------cceEEEecCC
Confidence            99999999875 578999999999999975 4578899999999999999984                 4568999999


Q ss_pred             CCcEEEEECCC-----------------------------CeEEEEEeCCCcCEEEEEEcCCCCEE-EEEeCCCeEEEEe
Q psy226          313 DKTIKLWDVGS-----------------------------GSLLFTLIGHDNWVRGVTFHPGGKYL-VSCGDDKTLRVWD  362 (406)
Q Consensus       313 d~~i~lwd~~~-----------------------------~~~~~~~~~h~~~v~~l~~s~~g~~l-~sgs~d~~i~vwd  362 (406)
                      |..|.+|...+                             ...+.++..|...|.+++||.-..++ |+-|.||++.|=.
T Consensus       280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~  359 (370)
T KOG1007|consen  280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS  359 (370)
T ss_pred             CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence            99999996421                             01234667899999999999877664 6779999998766


Q ss_pred             CC
Q psy226          363 TA  364 (406)
Q Consensus       363 ~~  364 (406)
                      +.
T Consensus       360 V~  361 (370)
T KOG1007|consen  360 VP  361 (370)
T ss_pred             CC
Confidence            54

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.84  E-value=5.8e-19  Score=168.22  Aligned_cols=233  Identities=18%  Similarity=0.198  Sum_probs=167.8

Q ss_pred             CCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC---CcEEEEeCCCCeE--EEEEecCCcceEEEEEecC
Q psy226          127 DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD---MSLKLWDMSTYQC--LKTMQGHDHNVTGVAFLPN  201 (406)
Q Consensus       127 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d---~~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~p~  201 (406)
                      +..|.+||..... .+.+..|...+.+..|+|+|+.|+.++.+   ..|.+||+.+++.  +..+.+|   ...++|+|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            5789999987655 45677788899999999999999987754   3699999987753  3333333   346899999


Q ss_pred             CCEEEEEe-CCCcEEEE--EcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe-CCCeEEEEeCCCccceeEEecCCceE
Q psy226          202 SDFVLSAS-RDKTIKMW--EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS-NDHTARVWSLATKETKAELRGHDHTV  277 (406)
Q Consensus       202 ~~~l~s~s-~d~~i~iw--d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v  277 (406)
                      |+.|+.++ .++.+.||  |+.++. ...+..+...+....|+|||+.|+.++ .++...||++...........+..  
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--
Confidence            99887764 68876655  665554 455666777788899999999877655 578888888754322112222222  


Q ss_pred             EEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCe
Q psy226          278 ECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT  357 (406)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~  357 (406)
                      ....|+|                  +|.+++..+.++ +.+||+.++........+  ....+.|+|+|++|+.++.++.
T Consensus       336 ~~~~~Sp------------------DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~  394 (429)
T PRK01742        336 YSAQISA------------------DGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGL  394 (429)
T ss_pred             CCccCCC------------------CCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCC
Confidence            2344555                  567787777765 556999888754322222  2356789999999999999998


Q ss_pred             EEEEeC--CCCccceeeccccceEEEEEEeCC
Q psy226          358 LRVWDT--ANKRNMKTLEAHSHFVTSLDFHRA  387 (406)
Q Consensus       358 i~vwd~--~~~~~~~~l~~h~~~v~~l~~~~~  387 (406)
                      +.+|++  .+++..+.+..|.+.+...+|+|.
T Consensus       395 ~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        395 GKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            888875  357788888888888899999985

>KOG0303|consensus

Probab=99.83  E-value=4.9e-19  Score=154.28  Aligned_cols=207  Identities=20%  Similarity=0.371  Sum_probs=159.9

Q ss_pred             EeccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCC-------cEEEEecccccCeeeEEECCCC-CEEEEEeCCCc
Q psy226          101 ALSGHRSPVIKVIFHPVF-SLMASCSEDATIRLWDYETG-------EYERALHGHLDSVQDIAFDQSG-KLLVSCSADMS  171 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~-~~latgs~dg~v~vwd~~~~-------~~~~~~~~h~~~V~~l~~~~~g-~~l~sgs~d~~  171 (406)
                      ...||+++|..++|+|.. ..+|+||.|.+|.||++..+       +....+.||...|--++|+|.. +.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            457999999999999975 68999999999999998654       3456788999999999999975 68899999999


Q ss_pred             EEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCc-cEEEEEECCCCCEEEEE
Q psy226          172 LKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE-WVRQIKVSPDGTLLASC  250 (406)
Q Consensus       172 i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~s~  250 (406)
                      |.+||+.+++.+-++. |.+-|.++.|+.+|.+|++.+.|+.|||||.+++..+..-.+|.+ .-..+.|-.+|..+-+|
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999888887 999999999999999999999999999999999998888777754 23345566788855554


Q ss_pred             e---CCCeEEEEeCCCccce---eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q psy226          251 S---NDHTARVWSLATKETK---AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG  324 (406)
Q Consensus       251 ~---~d~~v~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~  324 (406)
                      .   .+..+-+||....+..   .++... ..|.---|.|+                 .+-+.++|=.|+.||-|.+...
T Consensus       235 fsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~d-----------------t~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  235 FSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPD-----------------TSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             cccccccceeccCcccccCcceeEEeccC-CceEEeeecCC-----------------CCEEEEEecCCcceEEEEecCC
Confidence            3   4788999987654322   222111 11211122222                 2234456667999999998766


Q ss_pred             eE
Q psy226          325 SL  326 (406)
Q Consensus       325 ~~  326 (406)
                      .+
T Consensus       297 ~P  298 (472)
T KOG0303|consen  297 PP  298 (472)
T ss_pred             Cc
Confidence            53

>KOG1524|consensus

Probab=99.83  E-value=4.5e-19  Score=160.06  Aligned_cols=263  Identities=19%  Similarity=0.309  Sum_probs=196.7

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCe-eeEEEC-------CCCCEEEEEeCCCcEEEE
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSV-QDIAFD-------QSGKLLVSCSADMSLKLW  175 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V-~~l~~~-------~~g~~l~sgs~d~~i~vw  175 (406)
                      .|...|.|+.|+.....+.+++.+-.+.-||+.+..... +.-..+.| +++..-       .....|+.+++||.+.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~-~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEV-AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhh-hhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            466677899999988888887766666666665543221 11111111 111111       123578889999999988


Q ss_pred             eCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCe
Q psy226          176 DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHT  255 (406)
Q Consensus       176 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~  255 (406)
                      +- .++..+....|.+.+.+-.|+|+|.-|++++.||.|++|. ++|....++......|+|++|.|+.+-++-|. .+.
T Consensus        91 ~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h  167 (737)
T KOG1524|consen   91 NK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGH  167 (737)
T ss_pred             cc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCe
Confidence            63 4555667788999999999999999999999999999997 45655555555677899999999988777664 456


Q ss_pred             EEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc
Q psy226          256 ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN  335 (406)
Q Consensus       256 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~  335 (406)
                      +.+=.+.....+..-+.|++-|.++.|+|                  ...++++|+.|-..++||. .|+.+++-..|+-
T Consensus       168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~------------------~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey  228 (737)
T KOG1524|consen  168 ISIKPLAANSKIIRWRAHDGLVLSLSWST------------------QSNIIASGGEDFRFKIWDA-QGANLFTSAAEEY  228 (737)
T ss_pred             EEEeecccccceeEEeccCcEEEEeecCc------------------cccceeecCCceeEEeecc-cCcccccCChhcc
Confidence            66666666666667889999999999998                  3568999999999999997 5788888888999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEE
Q psy226          336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKV  402 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~i  402 (406)
                      +|++++|.|+ +.++.+|. ++.|+           -....+.|..++|++||..++.|...|.+.+
T Consensus       229 ~ITSva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  229 AITSVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ceeeeeeccc-cceeeeee-eeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            9999999999 55555654 24441           1234567999999999999999999987653

>KOG1587|consensus

Probab=99.82  E-value=2.6e-18  Score=163.25  Aligned_cols=242  Identities=20%  Similarity=0.260  Sum_probs=182.9

Q ss_pred             CCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcE--E----EEecccccCeeeEEECCCC--CEEEEEeCCCcEEEEe
Q psy226          106 RSPVIKVIFHPVF-SLMASCSEDATIRLWDYETGEY--E----RALHGHLDSVQDIAFDQSG--KLLVSCSADMSLKLWD  176 (406)
Q Consensus       106 ~~~V~~v~~~p~~-~~latgs~dg~v~vwd~~~~~~--~----~~~~~h~~~V~~l~~~~~g--~~l~sgs~d~~i~vwd  176 (406)
                      ..+|+|+.|+|.. .+||.|..+|.|.+||+..+..  .    .....|..+|..+.|..+-  .-++++|.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            4689999999974 6888999999999999987754  2    1234688999999997654  4599999999999998


Q ss_pred             CCCCeE------EEEEe------cCCcceEEEEEecCC-CEEEEEeCCCcEEEEE---cCCCe-----EEEEeecCCccE
Q psy226          177 MSTYQC------LKTMQ------GHDHNVTGVAFLPNS-DFVLSASRDKTIKMWE---VATGY-----CVKTLTGHREWV  235 (406)
Q Consensus       177 ~~~~~~------~~~~~------~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd---~~~~~-----~~~~~~~~~~~v  235 (406)
                      +.....      .....      .-...+++++|.|.. ..++.|+.+|.|.-=+   .....     ....+..|.+.|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            764322      11111      123468899999854 5788999999887632   22221     123456788999


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCC-CccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC
Q psy226          236 RQIKVSPDGTLLASCSNDHTARVWSLA-TKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK  314 (406)
Q Consensus       236 ~~l~~~~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  314 (406)
                      +++.++|=+..++..+.|-++++|... ...++..+..+...+.+++|+|..                 ...|+++..||
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr-----------------pavF~~~d~~G  464 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR-----------------PAVFATVDGDG  464 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC-----------------ceEEEEEcCCC
Confidence            999999976555444449999999987 666677777777889999999953                 34789999999


Q ss_pred             cEEEEECCC--CeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          315 TIKLWDVGS--GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       315 ~i~lwd~~~--~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      .|.+||+..  ..++...+-+....+.+.|+++|+.|++|...|++++|++.
T Consensus       465 ~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  465 NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             ceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            999999864  34455554456677888999999999999999999999985

>KOG0649|consensus

Probab=99.82  E-value=2.5e-17  Score=135.06  Aligned_cols=236  Identities=17%  Similarity=0.315  Sum_probs=169.6

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE--------EEEecccc-----cCeeeEEECCCCCEEE
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY--------ERALHGHL-----DSVQDIAFDQSGKLLV  164 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~--------~~~~~~h~-----~~V~~l~~~~~g~~l~  164 (406)
                      ..+..++|.+||+.++|+.  .+|++|+. |.|+=|.++....        ......|.     ..|+++...|..+-++
T Consensus        54 ~iv~eqahdgpiy~~~f~d--~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~  130 (325)
T KOG0649|consen   54 KIVPEQAHDGPIYYLAFHD--DFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL  130 (325)
T ss_pred             ceeeccccCCCeeeeeeeh--hheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence            3445689999999999993  56777764 9999998754321        11222343     3689999999888888


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC----------Ccc
Q psy226          165 SCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH----------REW  234 (406)
Q Consensus       165 sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~----------~~~  234 (406)
                      .++.|+.+.-||+++++..++++||++.|.++.-......+++|+.||++|+||.+++++++.+...          ..|
T Consensus       131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~w  210 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKW  210 (325)
T ss_pred             EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCce
Confidence            8889999999999999999999999999999998666678999999999999999999998877532          346


Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC
Q psy226          235 VRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK  314 (406)
Q Consensus       235 v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  314 (406)
                      |.+++.+.|  ++ .|+....+.+|.+++.++...+.- ...+.-+.|.                    ...+++++..+
T Consensus       211 igala~~ed--Wl-vCGgGp~lslwhLrsse~t~vfpi-pa~v~~v~F~--------------------~d~vl~~G~g~  266 (325)
T KOG0649|consen  211 IGALAVNED--WL-VCGGGPKLSLWHLRSSESTCVFPI-PARVHLVDFV--------------------DDCVLIGGEGN  266 (325)
T ss_pred             eEEEeccCc--eE-EecCCCceeEEeccCCCceEEEec-ccceeEeeee--------------------cceEEEecccc
Confidence            777776543  55 455677899999998887665542 2344455554                    23577888888


Q ss_pred             cEEEEECCCCeEEEEEeCCCcCEEEEEEcCC-CCEEEEEeCCCeEEEE
Q psy226          315 TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPG-GKYLVSCGDDKTLRVW  361 (406)
Q Consensus       315 ~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~-g~~l~sgs~d~~i~vw  361 (406)
                      .|.-|.+. |..-...........+..|+.+ -++|-.++..+.+.|+
T Consensus       267 ~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  267 HVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             ceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            89888773 4443333333333444444432 3455556666667665

>KOG0771|consensus

Probab=99.82  E-value=3.8e-19  Score=156.50  Aligned_cols=197  Identities=25%  Similarity=0.381  Sum_probs=145.4

Q ss_pred             eeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC
Q psy226          152 QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH  231 (406)
Q Consensus       152 ~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  231 (406)
                      ..++|+.+|..|++|+.||++|+|++.+...+.....|...|.++.|+|||++|++-+.| ..+||+..+|.++......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            578999999999999999999999988877777888899999999999999999999999 8999999999766655422


Q ss_pred             --CccEEEEEECCCC---C--EEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCC
Q psy226          232 --REWVRQIKVSPDG---T--LLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGG  304 (406)
Q Consensus       232 --~~~v~~l~~~~~~---~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (406)
                        ......+.|+.|+   .  .++....-+.|+.|+                                            
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~--------------------------------------------  262 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD--------------------------------------------  262 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEE--------------------------------------------
Confidence              1123344444443   1  111111222222222                                            


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee-ccccceEEEEE
Q psy226          305 PYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL-EAHSHFVTSLD  383 (406)
Q Consensus       305 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l-~~h~~~v~~l~  383 (406)
                                 +.+|+-.+--..+....-.+.|++++.+++|++++.|+.||.|-|++..+.+.++-. +.|...|+.|+
T Consensus       263 -----------~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~lt  331 (398)
T KOG0771|consen  263 -----------ISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLT  331 (398)
T ss_pred             -----------eeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEE
Confidence                       222322111111122222345999999999999999999999999999888777655 67999999999


Q ss_pred             EeCCCCEEEEeeCCCeEEEee
Q psy226          384 FHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       384 ~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      |+|+.+++++-+.|..+.+..
T Consensus       332 F~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  332 FSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             EcCCcCcccccccCCceeEEE
Confidence            999999999999888877654

>KOG0290|consensus

Probab=99.80  E-value=5.9e-18  Score=142.13  Aligned_cols=232  Identities=20%  Similarity=0.364  Sum_probs=174.4

Q ss_pred             cCCCCeEEEEEcCCC-----CEEEEEeCCCcEEEEEcCC--CcEE--EEe-----cccccCeeeEEECC-CCCEEEEEeC
Q psy226          104 GHRSPVIKVIFHPVF-----SLMASCSEDATIRLWDYET--GEYE--RAL-----HGHLDSVQDIAFDQ-SGKLLVSCSA  168 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~-----~~latgs~dg~v~vwd~~~--~~~~--~~~-----~~h~~~V~~l~~~~-~g~~l~sgs~  168 (406)
                      .|.-|++.+-|.|+.     .+|||++  ..+|+|.+..  .+..  ..+     ..+..++++..|+. +-+++.++|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            588899999999986     4677765  4799998774  2221  112     23456899999987 5578899999


Q ss_pred             CCcEEEEeCCCCe---EEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCeEEEEeec---CCccEEEEEEC
Q psy226          169 DMSLKLWDMSTYQ---CLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGYCVKTLTG---HREWVRQIKVS  241 (406)
Q Consensus       169 d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~---~~~~v~~l~~~  241 (406)
                      |-++.|||++++.   ....+-.|+.+|..++|...+ +.+++.+.||+||++|++....-..+..   ...+...++|+
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn  251 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN  251 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence            9999999999863   345677899999999999855 4789999999999999987543333322   24567778888


Q ss_pred             CC-CCEEEEEeC-CCeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEE
Q psy226          242 PD-GTLLASCSN-DHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL  318 (406)
Q Consensus       242 ~~-~~~l~s~~~-d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~l  318 (406)
                      ++ -+++|+-.. ...|.+.|++.. .++..+++|...|..++|.|.                 ....+.++++|.++-+
T Consensus       252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPh-----------------S~~hictaGDD~qali  314 (364)
T KOG0290|consen  252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPH-----------------SSSHICTAGDDCQALI  314 (364)
T ss_pred             cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCC-----------------CCceeeecCCcceEEE
Confidence            74 466776544 467999999865 567899999999999999996                 3457999999999999


Q ss_pred             EECCCCe------EEEEEeCCCcCEEEEEEcC-CCCEEEEEeCC
Q psy226          319 WDVGSGS------LLFTLIGHDNWVRGVTFHP-GGKYLVSCGDD  355 (406)
Q Consensus       319 wd~~~~~------~~~~~~~h~~~v~~l~~s~-~g~~l~sgs~d  355 (406)
                      ||+..--      ++.... ....|..+.|+| .+.+++.+...
T Consensus       315 WDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  315 WDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             EecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence            9986421      111222 456799999996 56788777643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=1.4e-16  Score=147.15  Aligned_cols=239  Identities=15%  Similarity=0.260  Sum_probs=157.8

Q ss_pred             CCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcC-CCcEE--EEecccccCeeeEEECCCCCEEEEEeC-CCcEEEEeCCC-
Q psy226          106 RSPVIKVIFHPVFSLMASC-SEDATIRLWDYE-TGEYE--RALHGHLDSVQDIAFDQSGKLLVSCSA-DMSLKLWDMST-  179 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latg-s~dg~v~vwd~~-~~~~~--~~~~~h~~~V~~l~~~~~g~~l~sgs~-d~~i~vwd~~~-  179 (406)
                      .+....++++|++++|+++ ..++.|.+|++. ++.+.  .... ..+....++|+|+|++|++++. ++.|.+|++.+ 
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence            3456678999999988765 458899999986 44432  2221 2335678999999999888764 78999999863 


Q ss_pred             C---eEEEEEecCCcceEEEEEecCCCEEEEE-eCCCcEEEEEcCCCeEEEE-----ee-cCCccEEEEEECCCCCEEEE
Q psy226          180 Y---QCLKTMQGHDHNVTGVAFLPNSDFVLSA-SRDKTIKMWEVATGYCVKT-----LT-GHREWVRQIKVSPDGTLLAS  249 (406)
Q Consensus       180 ~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~-s~d~~i~iwd~~~~~~~~~-----~~-~~~~~v~~l~~~~~~~~l~s  249 (406)
                      +   +.+..+.+ .....+++++|++++++++ ..++.|.+||+.+...+..     .. ......+.++|+|+|+++++
T Consensus       113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv  191 (330)
T PRK11028        113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYC  191 (330)
T ss_pred             CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEE
Confidence            2   22233322 2346678899999988654 4569999999976322211     11 11233567899999999987


Q ss_pred             EeC-CCeEEEEeCCCc--c--ceeEEecCC------ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC-CCcEE
Q psy226          250 CSN-DHTARVWSLATK--E--TKAELRGHD------HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR-DKTIK  317 (406)
Q Consensus       250 ~~~-d~~v~vwd~~~~--~--~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~  317 (406)
                      +.. ++.|.+|++...  .  ....+..+.      .....+.++|                  ++++++++.. ++.|.
T Consensus       192 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p------------------dg~~lyv~~~~~~~I~  253 (330)
T PRK11028        192 VNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP------------------DGRHLYACDRTASLIS  253 (330)
T ss_pred             EecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC------------------CCCEEEEecCCCCeEE
Confidence            776 999999999732  1  122221110      0011233443                  5778888754 78999


Q ss_pred             EEECCCCeEEEEEeCC---CcCEEEEEEcCCCCEEEEEeC-CCeEEEEeCC
Q psy226          318 LWDVGSGSLLFTLIGH---DNWVRGVTFHPGGKYLVSCGD-DKTLRVWDTA  364 (406)
Q Consensus       318 lwd~~~~~~~~~~~~h---~~~v~~l~~s~~g~~l~sgs~-d~~i~vwd~~  364 (406)
                      +|++........+.++   ......+.|+|+|++|+++.. +++|.+|++.
T Consensus       254 v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        254 VFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            9998543322222222   224568899999999987765 8999999874

>KOG1523|consensus

Probab=99.80  E-value=1e-17  Score=142.57  Aligned_cols=244  Identities=19%  Similarity=0.272  Sum_probs=185.3

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeC-CC
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE---YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM-ST  179 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~---~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~-~~  179 (406)
                      --..||+|.+|++|...+|.+-....|.||......   ...++..|...|++|+|+|.++.|++|+.|..-.||.. +.
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            345799999999999999999999999999987765   45678889999999999999999999999999999987 33


Q ss_pred             --CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeE----EEEeecCCccEEEEEECCCCCEEEEEeCC
Q psy226          180 --YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYC----VKTLTGHREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       180 --~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                        .+....+..++...+++.|+|.++.+++||.-+.|.||=++....    .+.-+.++..|.+++|+|++-++++|+.|
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence              344445667899999999999999999999999999987654321    12334567789999999999999999999


Q ss_pred             CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC
Q psy226          254 HTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH  333 (406)
Q Consensus       254 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h  333 (406)
                      +..|||..-              |.++.--|..              .+-|.              .+.-|+++.++...
T Consensus       168 ~k~rVfSay--------------IK~Vdekpap--------------~pWgs--------------k~PFG~lm~E~~~~  205 (361)
T KOG1523|consen  168 GKCRVFSAY--------------IKGVDEKPAP--------------TPWGS--------------KMPFGQLMSEASSS  205 (361)
T ss_pred             cceeEEEEe--------------eeccccCCCC--------------CCCcc--------------CCcHHHHHHhhccC
Confidence            999999742              1222111100              00000              01224444455556


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-cceeeccccceEEEEEEeCCCC
Q psy226          334 DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR-NMKTLEAHSHFVTSLDFHRAHP  389 (406)
Q Consensus       334 ~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~-~~~~l~~h~~~v~~l~~~~~~~  389 (406)
                      .++|..+.|+|+|..|+=.+.|.++.+=|..... .+.++..-.-+..++.|-.+..
T Consensus       206 ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~  262 (361)
T KOG1523|consen  206 GGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENS  262 (361)
T ss_pred             CCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCc
Confidence            7899999999999999999999999999876553 3444433335667777765543

>KOG1310|consensus

Probab=99.79  E-value=1.2e-18  Score=157.72  Aligned_cols=213  Identities=27%  Similarity=0.481  Sum_probs=161.3

Q ss_pred             EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcceEEEEEecC--CCEEEEEeCCCcEEE
Q psy226          140 YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM-QGHDHNVTGVAFLPN--SDFVLSASRDKTIKM  216 (406)
Q Consensus       140 ~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~i  216 (406)
                      .++.+.||++.|+++.|+.+|.+|++||.|-.+.|||.-..+.++.+ .||...|.+++|.|.  ...+++|+.|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            45678999999999999999999999999999999999887777665 589999999999994  458999999999999


Q ss_pred             EEcCC----------CeEEEEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCCccc-eeE---------EecCCc
Q psy226          217 WEVAT----------GYCVKTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKET-KAE---------LRGHDH  275 (406)
Q Consensus       217 wd~~~----------~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~-~~~---------~~~~~~  275 (406)
                      +|+..          ......+..|...|..++..|++ ..|.+++.||+++-+|++.... ...         +...--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            99974          12344566789999999999998 8899999999999999986321 100         011112


Q ss_pred             eEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC--------C----------eEEEEE-eCCC--
Q psy226          276 TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS--------G----------SLLFTL-IGHD--  334 (406)
Q Consensus       276 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~--------~----------~~~~~~-~~h~--  334 (406)
                      ...|+..+|.                 ...+|++|+.|--.++||.+.        +          +++.-+ .+|.  
T Consensus       202 elk~ltisp~-----------------rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn  264 (758)
T KOG1310|consen  202 ELKCLTISPS-----------------RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN  264 (758)
T ss_pred             eeeeeeecCC-----------------CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence            3456666663                 467899999999999999431        1          122222 2332  


Q ss_pred             ------cC---EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc
Q psy226          335 ------NW---VRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNM  369 (406)
Q Consensus       335 ------~~---v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~  369 (406)
                            ..   ++-++|+|+|..|+..-..-.|+++|+..++..
T Consensus       265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence                  11   466799999987766555568999999766543

>KOG1272|consensus

Probab=99.79  E-value=6.2e-19  Score=156.63  Aligned_cols=266  Identities=18%  Similarity=0.277  Sum_probs=212.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      .-+.+.++.+|++|+-|+.-|.|..+|+.++++...+. -...|.++.|-.+..++|++ ....+.|||-. |..++-++
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHClk  207 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCLK  207 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeehh
Confidence            34578899999999999999999999999998776654 34678999998888888876 55689999964 44455555


Q ss_pred             cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccce
Q psy226          188 GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETK  267 (406)
Q Consensus       188 ~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  267 (406)
                      .| ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-.|...|+|.+|.....+++
T Consensus       208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL  286 (545)
T KOG1272|consen  208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL  286 (545)
T ss_pred             hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence            44 46889999999888999999999999999999999999888888999999999999999999999999999999999


Q ss_pred             eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCC
Q psy226          268 AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK  347 (406)
Q Consensus       268 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~  347 (406)
                      ..+..|..+|.++++.+                  +|.|++|.+.|..++|||++....+.+... ......++||..| 
T Consensus       287 vKiLcH~g~V~siAv~~------------------~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-  346 (545)
T KOG1272|consen  287 VKILCHRGPVSSIAVDR------------------GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-  346 (545)
T ss_pred             HHHHhcCCCcceEEECC------------------CCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-
Confidence            99999999999999987                  589999999999999999998877666554 4457788888665 


Q ss_pred             EEEEEeCCCeEEEEe-CCC--Cccceee--ccccceEEEEEEeCCCCEEEEeeCCC
Q psy226          348 YLVSCGDDKTLRVWD-TAN--KRNMKTL--EAHSHFVTSLDFHRAHPYVVTGSVDK  398 (406)
Q Consensus       348 ~l~sgs~d~~i~vwd-~~~--~~~~~~l--~~h~~~v~~l~~~~~~~~l~sgs~Dg  398 (406)
                       +++.|....+.||. ...  +.....+  .--.++|..|.|.|-...|-.|-.-|
T Consensus       347 -lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  347 -LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             -ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence             34445556799994 222  1111111  11244799999999876665554433

>KOG2110|consensus

Probab=99.78  E-value=3.1e-16  Score=136.06  Aligned_cols=235  Identities=16%  Similarity=0.255  Sum_probs=171.4

Q ss_pred             ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCC--cEEEEEcCCCeEE
Q psy226          148 LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK--TIKMWEVATGYCV  225 (406)
Q Consensus       148 ~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~--~i~iwd~~~~~~~  225 (406)
                      ...++.+.|+.+...|..|+.|| -+++..+..............|..+-|+  ..+++..+.+.  .+++.+++.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence            34567777999999999999998 5788776533211111222345555565  44666555554  4888888876655


Q ss_pred             EEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecC-CceEEEEEeCCCCCccccccccCCCCCCCCC
Q psy226          226 KTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH-DHTVECVAWAPGVASESISEAAGRPPGQGGG  304 (406)
Q Consensus       226 ~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (406)
                      ..+. ....|.++.++.+  .|+++-.+. |+|||+++.+.+.++..- ..+-.-++++|..                .+
T Consensus        82 Ce~~-fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~----------------~n  141 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN----------------AN  141 (391)
T ss_pred             EEEe-cCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC----------------CC
Confidence            4443 3456888888644  566665554 999999998887766544 2222234555532                23


Q ss_pred             CEEEEEe--CCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCccceeeccc--cceE
Q psy226          305 PYLATGS--RDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT-LRVWDTANKRNMKTLEAH--SHFV  379 (406)
Q Consensus       305 ~~l~s~~--~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~-i~vwd~~~~~~~~~l~~h--~~~v  379 (406)
                      .|++.-+  ..|.|.+||+.+-+.+..+..|.+.+-+++|+|+|.+||++|+.|+ |||+.+.+++.+.++.--  -..|
T Consensus       142 ~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~I  221 (391)
T KOG2110|consen  142 CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSI  221 (391)
T ss_pred             ceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEE
Confidence            4555432  3578999999999999999999999999999999999999999886 689999999999888532  3358


Q ss_pred             EEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          380 TSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       380 ~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .+|+|+|++++|++.|..++|++|.+
T Consensus       222 ySL~Fs~ds~~L~~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  222 YSLSFSPDSQFLAASSNTETVHIFKL  247 (391)
T ss_pred             EEEEECCCCCeEEEecCCCeEEEEEe
Confidence            99999999999999999999999976

>KOG1517|consensus

Probab=99.77  E-value=4.3e-17  Score=157.92  Aligned_cols=239  Identities=18%  Similarity=0.310  Sum_probs=171.4

Q ss_pred             CeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC---cceEEEEEecC--CCEEEEEeCCCcEEEEEc-CCC-
Q psy226          150 SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHD---HNVTGVAFLPN--SDFVLSASRDKTIKMWEV-ATG-  222 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~p~--~~~l~s~s~d~~i~iwd~-~~~-  222 (406)
                      +-..+.|+|-...++++...-.|++||.+.++++..+..+.   ..|+.+.+...  ..++++|+.||.||||+- .++ 
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            34567888888889888877789999999988877665443   46888888653  348999999999999964 222 


Q ss_pred             ---eEEEEee---c----CCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecC-CceEEEEEeCCCCCcccc
Q psy226          223 ---YCVKTLT---G----HREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH-DHTVECVAWAPGVASESI  291 (406)
Q Consensus       223 ---~~~~~~~---~----~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~  291 (406)
                         +.+....   +    ..+.-.-+.|..+..+|+++|.-..|||||.........+... ...++++.  ++      
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS--~~------ 1217 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS--AD------ 1217 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec--cc------
Confidence               2222211   1    1111234567666667777777899999999876655444322 22222221  11      


Q ss_pred             ccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC---eEEEEEeCCCcC--EEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q psy226          292 SEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG---SLLFTLIGHDNW--VRGVTFHPGGK-YLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       292 ~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~---~~~~~~~~h~~~--v~~l~~s~~g~-~l~sgs~d~~i~vwd~~~  365 (406)
                               ...|..+++|..||.||+||.+..   ..+...+.|..+  |..+.+.++|- .|++|+.||.|++||++.
T Consensus      1218 ---------~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1218 ---------LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             ---------ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence                     124789999999999999998764   346677788887  99999999775 499999999999999987


Q ss_pred             Cccce--eecccc--c-eEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          366 KRNMK--TLEAHS--H-FVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       366 ~~~~~--~l~~h~--~-~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      .....  ++..|-  + ..+++..|++.+++|+|+. +.|+||++.
T Consensus      1289 ~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1289 SSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred             CcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence            43222  233332  3 4899999999999999999 999999863

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=5e-17  Score=154.98  Aligned_cols=220  Identities=19%  Similarity=0.222  Sum_probs=157.4

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe-CCCcEEEE
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSED---ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS-ADMSLKLW  175 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~d---g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs-~d~~i~vw  175 (406)
                      ..+..|..+|...+|+|+++.|+.++.+   ..|++||+.+++.... ....+...+++|+|||+.|+.++ .+|.+.||
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy  275 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIY  275 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEE
Confidence            4466788899999999999999987754   3699999988764322 21222345789999999888765 67876665


Q ss_pred             --eCCCCeEEEEEecCCcceEEEEEecCCCEEEEEe-CCCcEEEEEcCCC-eEEEEeecCCccEEEEEECCCCCEEEEEe
Q psy226          176 --DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS-RDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       176 --d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                        |+.+++ ...+..+...+.+..|+|+|+.|+.++ .++...||++... .....+ ++..  ....|+|+|+.++..+
T Consensus       276 ~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~  351 (429)
T PRK01742        276 VMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMIN  351 (429)
T ss_pred             EEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEc
Confidence              666555 345666777788999999999776554 5788888876432 222223 3433  3578999999998888


Q ss_pred             CCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEEC--CCCeEEEE
Q psy226          252 NDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDV--GSGSLLFT  329 (406)
Q Consensus       252 ~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~--~~~~~~~~  329 (406)
                      .++ +.+||+.++........+  ......|+|                  +|.+++.++.++.+.+|++  .+|+....
T Consensus       352 ~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP------------------dG~~i~~~s~~g~~~~l~~~~~~G~~~~~  410 (429)
T PRK01742        352 GDN-VVKQDLTSGSTEVLSSTF--LDESPSISP------------------NGIMIIYSSTQGLGKVLQLVSADGRFKAR  410 (429)
T ss_pred             CCC-EEEEECCCCCeEEecCCC--CCCCceECC------------------CCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence            765 455999876543222221  224455666                  5788999999998888875  46888888


Q ss_pred             EeCCCcCEEEEEEcCC
Q psy226          330 LIGHDNWVRGVTFHPG  345 (406)
Q Consensus       330 ~~~h~~~v~~l~~s~~  345 (406)
                      +.+|.+.+...+|+|-
T Consensus       411 l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        411 LPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ccCCCCCCCCcccCCC
Confidence            8888888999999984

>KOG1272|consensus

Probab=99.77  E-value=1.1e-18  Score=155.12  Aligned_cols=229  Identities=21%  Similarity=0.347  Sum_probs=190.4

Q ss_pred             eeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeec
Q psy226          151 VQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG  230 (406)
Q Consensus       151 V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  230 (406)
                      -..+.++.+|++|+.|+.-|.+-.+|+.+++....+.. ...|.++.|..+.++++++ ....+.|||- .|..++.++.
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~  208 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKR  208 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhh
Confidence            45688999999999999999999999999887766653 4578899999888877775 5667899994 5777777776


Q ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEE
Q psy226          231 HREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATG  310 (406)
Q Consensus       231 ~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  310 (406)
                      | ..|..+.|-|..-+|++++..|.++.-|+.+++.+..+..-...+..+.-+|                  .+..+-+|
T Consensus       209 ~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP------------------~NaVih~G  269 (545)
T KOG1272|consen  209 H-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP------------------YNAVIHLG  269 (545)
T ss_pred             c-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC------------------ccceEEEc
Confidence            6 4588899999999999999999999999999999888877777777666666                  24568889


Q ss_pred             eCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCE
Q psy226          311 SRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPY  390 (406)
Q Consensus       311 ~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~  390 (406)
                      ...|+|.+|......++..+..|.++|++|++.++|+|++|.|.|..++|||+++...+.++.. ......++++..| +
T Consensus       270 hsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-l  347 (545)
T KOG1272|consen  270 HSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-L  347 (545)
T ss_pred             CCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-c
Confidence            9999999999999999999999999999999999999999999999999999998877766654 3456788898766 3


Q ss_pred             EEEeeCCCeEEEee
Q psy226          391 VVTGSVDKTVKVWE  404 (406)
Q Consensus       391 l~sgs~Dg~v~iw~  404 (406)
                      || .|....|.||.
T Consensus       348 LA-~~~G~~v~iw~  360 (545)
T KOG1272|consen  348 LA-LSYGDHVQIWK  360 (545)
T ss_pred             ee-eecCCeeeeeh
Confidence            43 44555788884

>KOG4227|consensus

Probab=99.77  E-value=6.5e-17  Score=141.04  Aligned_cols=246  Identities=16%  Similarity=0.265  Sum_probs=182.2

Q ss_pred             EEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC------CCeEEEEEe-cCCcceEEEEEecCCCEEEEEeCCCc
Q psy226          141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS------TYQCLKTMQ-GHDHNVTGVAFLPNSDFVLSASRDKT  213 (406)
Q Consensus       141 ~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~------~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~  213 (406)
                      .+-+.+|.+.|+++.|+.++++|++|+.|..+++|++.      +.+.+.... .|...|.|++|...+.++++|..+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            34467899999999999999999999999999999985      234443332 35579999999998899999999999


Q ss_pred             EEEEEcCCCeEEEEeec--CCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCcc-cee--EEecCCceEEEEEeCCCCCc
Q psy226          214 IKMWEVATGYCVKTLTG--HREWVRQIKVSPDGTLLASCSNDHTARVWSLATKE-TKA--ELRGHDHTVECVAWAPGVAS  288 (406)
Q Consensus       214 i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~--~~~~~~~~v~~~~~~~~~~~  288 (406)
                      |...|+.+.+.+..+..  ..+.|..+..+|-.+.|++.+.++.|.+||.+... ...  .+........++-|.|.   
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~---  205 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE---  205 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC---
Confidence            99999999888777643  23589999999999999999999999999997654 221  12223334455666663   


Q ss_pred             cccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE-EEE---EeCCCc---CEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy226          289 ESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL-LFT---LIGHDN---WVRGVTFHPGGKYLVSCGDDKTLRVW  361 (406)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~-~~~---~~~h~~---~v~~l~~s~~g~~l~sgs~d~~i~vw  361 (406)
                                    ...+|++++..+-+-+||.+..+. +..   +.+-..   .-.++.|+|+|..+.+--....=.+|
T Consensus       206 --------------~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~  271 (609)
T KOG4227|consen  206 --------------TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYF  271 (609)
T ss_pred             --------------CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEe
Confidence                          345788999999999999986542 221   222222   23567899999988877666566678


Q ss_pred             eCCCCccc-eeecccc-------ceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          362 DTANKRNM-KTLEAHS-------HFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       362 d~~~~~~~-~~l~~h~-------~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |+-+.++. -.+. |.       ..+.+++|.-+.. ++|||.+-.|.+|.+
T Consensus       272 D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl  321 (609)
T KOG4227|consen  272 DFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKL  321 (609)
T ss_pred             eeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEec
Confidence            87664432 2221 22       2467788876654 999999999999975

>KOG0771|consensus

Probab=99.76  E-value=1.5e-17  Score=146.51  Aligned_cols=175  Identities=21%  Similarity=0.298  Sum_probs=138.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-
Q psy226          110 IKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQG-  188 (406)
Q Consensus       110 ~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~-  188 (406)
                      -+++|++++..|++|+.||++|||++.+...+.....|...|.+++|+|||++|++-+.| ..+||+..++.++..... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            689999999999999999999999999888777778899999999999999999999999 899999999876655442 


Q ss_pred             -CCcceEEEEEecCC---CEEE--EEeCCCcEEEEEcCCCeE-----EEEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Q psy226          189 -HDHNVTGVAFLPNS---DFVL--SASRDKTIKMWEVATGYC-----VKTLTGHREWVRQIKVSPDGTLLASCSNDHTAR  257 (406)
Q Consensus       189 -h~~~v~~~~~~p~~---~~l~--s~s~d~~i~iwd~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~  257 (406)
                       -+..+..+.|+.++   .+.+  ....-+.|+.||+..-..     ..........|.+++.+++|++++.|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence             23356678888776   3333  334456677777643211     111112234689999999999999999999999


Q ss_pred             EEeCCCccceeEE-ecCCceEEEEEeCCC
Q psy226          258 VWSLATKETKAEL-RGHDHTVECVAWAPG  285 (406)
Q Consensus       258 vwd~~~~~~~~~~-~~~~~~v~~~~~~~~  285 (406)
                      |++..+.+..+.. +.|...|+.+.|+|+
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pd  335 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPD  335 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCC
Confidence            9999877665544 468999999999995

>KOG1524|consensus

Probab=99.76  E-value=1.5e-17  Score=150.26  Aligned_cols=227  Identities=18%  Similarity=0.300  Sum_probs=166.1

Q ss_pred             ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceE-EEEEec-------CCCEEEEEeCCCcEEEE
Q psy226          146 GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVT-GVAFLP-------NSDFVLSASRDKTIKMW  217 (406)
Q Consensus       146 ~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~p-------~~~~l~s~s~d~~i~iw  217 (406)
                      .|+..|.|+.|+.+...+.+++.+..++-||+.+.. ...+.-..+-|. .+..-|       ..+.++.++.||.+.+.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            366667789998877766665555444455554321 111111111111 111111       22478889999999888


Q ss_pred             EcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCC
Q psy226          218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGR  297 (406)
Q Consensus       218 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  297 (406)
                      + +.++....+..|.+.+.+-.|+|||.-|++++.||.|++|.- ++....++.....+|+|++|.|..           
T Consensus        91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S-----------  157 (737)
T KOG1524|consen   91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNS-----------  157 (737)
T ss_pred             c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCC-----------
Confidence            6 456777788899999999999999999999999999999984 455555666677899999999953           


Q ss_pred             CCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccc
Q psy226          298 PPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSH  377 (406)
Q Consensus       298 ~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~  377 (406)
                            ...+++.  .+.+.|=.+.....+...+.|++.|.++.|+|....+++|++|-..+|||. .|+.+.+-..|..
T Consensus       158 ------~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey  228 (737)
T KOG1524|consen  158 ------NSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEY  228 (737)
T ss_pred             ------CceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhcc
Confidence                  2344443  355666666666667788899999999999999999999999999999995 4667777778999


Q ss_pred             eEEEEEEeCCCCEEEEeeC
Q psy226          378 FVTSLDFHRAHPYVVTGSV  396 (406)
Q Consensus       378 ~v~~l~~~~~~~~l~sgs~  396 (406)
                      +|++++|+|+ ...+.||.
T Consensus       229 ~ITSva~npd-~~~~v~S~  246 (737)
T KOG1524|consen  229 AITSVAFNPE-KDYLLWSY  246 (737)
T ss_pred             ceeeeeeccc-cceeeeee
Confidence            9999999999 55555654

>KOG1963|consensus

Probab=99.75  E-value=1.4e-15  Score=145.39  Aligned_cols=273  Identities=18%  Similarity=0.287  Sum_probs=202.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCC---CEEEEEeCCCcEEEEeCCCCeEEEEEe
Q psy226          111 KVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG---KLLVSCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       111 ~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g---~~l~sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      .-.|++|++.++.+. +..|+||...+|+....+.+|+.++..+.+.|..   .++++++.||+|++||...+..++++.
T Consensus        21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~   99 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD   99 (792)
T ss_pred             ccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence            345899998888765 4689999999999999999999999999998865   467899999999999998877766654


Q ss_pred             cCCcceEE-----------------------------------------------------------EEEecCCCEEEEE
Q psy226          188 GHDHNVTG-----------------------------------------------------------VAFLPNSDFVLSA  208 (406)
Q Consensus       188 ~h~~~v~~-----------------------------------------------------------~~~~p~~~~l~s~  208 (406)
                      .+- ++.+                                                           +.+++.|.+.. .
T Consensus       100 ~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~-i  177 (792)
T KOG1963|consen  100 NNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG-I  177 (792)
T ss_pred             cCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE-E
Confidence            221 1111                                                           12222222111 1


Q ss_pred             eCCCcEEEEEcCCCeEEE----EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC----ccceeEEecCCceEEEE
Q psy226          209 SRDKTIKMWEVATGYCVK----TLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT----KETKAELRGHDHTVECV  280 (406)
Q Consensus       209 s~d~~i~iwd~~~~~~~~----~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~  280 (406)
                      -.+..+.+|+...+....    .-..|...+++.+++|.++++|+|..||.|.+|.--.    ......+.=|...|.++
T Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L  257 (792)
T KOG1963|consen  178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL  257 (792)
T ss_pred             EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence            123345556655533110    0123666689999999999999999999999996322    12334566788899999


Q ss_pred             EeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy226          281 AWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRV  360 (406)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~v  360 (406)
                      +|++                  +|.+|++|+..+.+-+|.+.+++ ..-++.-.+.|..+.+|||+.+.+..-.|+.|.+
T Consensus       258 ~fS~------------------~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l  318 (792)
T KOG1963|consen  258 SFSS------------------DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL  318 (792)
T ss_pred             EEec------------------CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence            9987                  58899999999999999999988 3344456788999999999999999999999999


Q ss_pred             EeCCCCccceeecc-----------ccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          361 WDTANKRNMKTLEA-----------HSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       361 wd~~~~~~~~~l~~-----------h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      -...+.....++.+           ..+..+.++++|.-+.++-.+.-|.|.+||+
T Consensus       319 i~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl  374 (792)
T KOG1963|consen  319 IKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL  374 (792)
T ss_pred             EeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence            98755443333322           2445788999997778888899999999985

>KOG1188|consensus

Probab=99.74  E-value=2.5e-16  Score=135.19  Aligned_cols=194  Identities=18%  Similarity=0.315  Sum_probs=156.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEec--CCCEEEEEeCCCcEEEEEcCCCeEEE--EeecCC-ccE
Q psy226          161 KLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP--NSDFVLSASRDKTIKMWEVATGYCVK--TLTGHR-EWV  235 (406)
Q Consensus       161 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~~~-~~v  235 (406)
                      ..++++.+.|+|++||..+++.+..++++...+..+.|..  ..+.+.+|+.||+|++||++......  ....++ .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5788889999999999999999999999999999999987  45789999999999999998765433  334454 456


Q ss_pred             EEEEECCCCCEEEEEe----CCCeEEEEeCCCccc-e-eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE
Q psy226          236 RQIKVSPDGTLLASCS----NDHTARVWSLATKET-K-AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT  309 (406)
Q Consensus       236 ~~l~~~~~~~~l~s~~----~d~~v~vwd~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  309 (406)
                      .+++.+-.++.+++|.    .|-.|.+||++..+. + .....|...|+++.|.|.                 +...|++
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-----------------~pnlLlS  183 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-----------------DPNLLLS  183 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-----------------CCCeEEe
Confidence            6777766788888876    477899999987665 3 334579999999999995                 4668999


Q ss_pred             EeCCCcEEEEECCCCe---EEEEEeCCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcccee
Q psy226          310 GSRDKTIKLWDVGSGS---LLFTLIGHDNWVRGVTFHPGG-KYLVSCGDDKTLRVWDTANKRNMKT  371 (406)
Q Consensus       310 ~~~d~~i~lwd~~~~~---~~~~~~~h~~~v~~l~~s~~g-~~l~sgs~d~~i~vwd~~~~~~~~~  371 (406)
                      ||-||.|.+||+....   .+.....|.+.|..+.|..++ +.|.+-+...+..+|+++.+.....
T Consensus       184 GSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~  249 (376)
T KOG1188|consen  184 GSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETW  249 (376)
T ss_pred             ecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhc
Confidence            9999999999997542   234445677889999999887 4588889999999999987765433

>KOG2110|consensus

Probab=99.74  E-value=5.7e-15  Score=128.25  Aligned_cols=233  Identities=14%  Similarity=0.232  Sum_probs=175.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADM--SLKLWDMSTYQCLK  184 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~--~i~vwd~~~~~~~~  184 (406)
                      ..++.+.|+.+...|..|+.||. ++|..+.-..-.......-.|-.+-|+.  .++|..+.+.  .+++.+......+.
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~IC   82 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTIC   82 (391)
T ss_pred             cceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEE
Confidence            34667779999999999999984 6676554322000001112355566654  4666655543  48888888776666


Q ss_pred             EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeec---CCccEEEEEECCCCCEEEEEe--CCCeEEEE
Q psy226          185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG---HREWVRQIKVSPDGTLLASCS--NDHTARVW  259 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~s~~--~d~~v~vw  259 (406)
                      .+. ...+|.++.++.  +.|+++=.+ .|.|||+++.+.++++..   +...+.++++++.+.++|--+  ..|.|.+|
T Consensus        83 e~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   83 EIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             EEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence            554 356799999864  455555444 499999999988888754   344466666666677887533  46899999


Q ss_pred             eCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCc-EEEEECCCCeEEEEEeCC--CcC
Q psy226          260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT-IKLWDVGSGSLLFTLIGH--DNW  336 (406)
Q Consensus       260 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~lwd~~~~~~~~~~~~h--~~~  336 (406)
                      |+.+-++...+..|..++.+++|+|                  +|.+||++|..|+ |||+.+.+|+.+++|.--  ...
T Consensus       159 d~~nl~~v~~I~aH~~~lAalafs~------------------~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~  220 (391)
T KOG2110|consen  159 DTINLQPVNTINAHKGPLAALAFSP------------------DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVS  220 (391)
T ss_pred             EcccceeeeEEEecCCceeEEEECC------------------CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeE
Confidence            9999999999999999999999998                  5889999999997 799999999999998753  345


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          337 VRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       337 v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      |.+++|+|++++|.+.|..++|+||.+.
T Consensus       221 IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  221 IYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             EEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            8899999999999999999999999764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.73  E-value=1.6e-14  Score=133.69  Aligned_cols=293  Identities=16%  Similarity=0.185  Sum_probs=182.5

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe-CCCcEEEEeCCCC
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS-ADMSLKLWDMSTY  180 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs-~d~~i~vwd~~~~  180 (406)
                      +.....+-..++|+||++++++++.||.|.++|+.+++...+++... ...++++++||++++++. .++.+.++|..+.
T Consensus        32 i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl  110 (369)
T PF02239_consen   32 IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL  110 (369)
T ss_dssp             EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred             EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence            33333333457899999999999999999999999999998887543 457899999999998776 5799999999999


Q ss_pred             eEEEEEecC-------CcceEEEEEecCCCEEEEEeC-CCcEEEEEcCCCeEEE-EeecCCccEEEEEECCCCCEEEEE-
Q psy226          181 QCLKTMQGH-------DHNVTGVAFLPNSDFVLSASR-DKTIKMWEVATGYCVK-TLTGHREWVRQIKVSPDGTLLASC-  250 (406)
Q Consensus       181 ~~~~~~~~h-------~~~v~~~~~~p~~~~l~s~s~-d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~-  250 (406)
                      +.++.+...       ...+.++..+|....++..-. -+.|.+-|......+. .............|+|++++++.+ 
T Consensus       111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEE
T ss_pred             cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecc
Confidence            988877543       345778888888885555544 4777777876543222 222334556788999999987664 


Q ss_pred             eCCCeEEEEeCCCccceeEEec----CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE
Q psy226          251 SNDHTARVWSLATKETKAELRG----HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL  326 (406)
Q Consensus       251 ~~d~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~  326 (406)
                      ..++.+-++|..+......+..    |..+...+. +|..  .......      ..+...++.-..+.+.+||..+.+.
T Consensus       191 ~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p-hp~~--g~vw~~~------~~~~~~~~~ig~~~v~v~d~~~wkv  261 (369)
T PF02239_consen  191 NGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP-HPGF--GPVWATS------GLGYFAIPLIGTDPVSVHDDYAWKV  261 (369)
T ss_dssp             GGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE-ETTT--EEEEEEE------BSSSSEEEEEE--TTT-STTTBTSE
T ss_pred             cccceeEEEeeccceEEEEeecccccccccccccc-CCCc--ceEEeec------cccceecccccCCccccchhhcCeE
Confidence            5678999999988766554431    222222221 1110  0000000      0122232333344567889999999


Q ss_pred             EEEEeCCCcCEEEEEEcCCCCEEEEE----eCCCeEEEEeCCCCccceeecccc-ceEEEEEEeCCCCEEEEeeCC--Ce
Q psy226          327 LFTLIGHDNWVRGVTFHPGGKYLVSC----GDDKTLRVWDTANKRNMKTLEAHS-HFVTSLDFHRAHPYVVTGSVD--KT  399 (406)
Q Consensus       327 ~~~~~~h~~~v~~l~~s~~g~~l~sg----s~d~~i~vwd~~~~~~~~~l~~h~-~~v~~l~~~~~~~~l~sgs~D--g~  399 (406)
                      +.++...... .-+..||++++|.+.    ...++|.|+|..+.+.+.++.... ..+..+.|+++|..+..+.+|  |.
T Consensus       262 v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~  340 (369)
T PF02239_consen  262 VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGA  340 (369)
T ss_dssp             EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTE
T ss_pred             EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCE
Confidence            9998877666 677889999999887    456899999999988777775332 248899999999976544433  36


Q ss_pred             EEEeec
Q psy226          400 VKVWEC  405 (406)
Q Consensus       400 v~iw~~  405 (406)
                      |.+||-
T Consensus       341 i~v~D~  346 (369)
T PF02239_consen  341 IVVYDA  346 (369)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999985

...

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.1e-14  Score=138.56  Aligned_cols=235  Identities=16%  Similarity=0.187  Sum_probs=158.7

Q ss_pred             CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe---CCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCE
Q psy226          128 ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS---ADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDF  204 (406)
Q Consensus       128 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs---~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  204 (406)
                      ..|.+||...... +.+..+...+.+.+|+|||+.|+..+   .+..+.+||+.+++... +......+....|+|+|+.
T Consensus       179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence            3688888876543 33445667899999999999988654   24579999998875432 2222333456899999998


Q ss_pred             EEEE-eCCC--cEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCC-CeEEEE--eCCCccceeEEecCCceEE
Q psy226          205 VLSA-SRDK--TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSND-HTARVW--SLATKETKAELRGHDHTVE  278 (406)
Q Consensus       205 l~s~-s~d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-~~v~vw--d~~~~~~~~~~~~~~~~v~  278 (406)
                      |+.. +.++  .|.+||+.++...+ +..+...+....|+|||+.|+..+.+ +...+|  |+.++.. ..+..+.....
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~  334 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQ  334 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCcc
Confidence            7754 4455  58899998876544 44444567789999999988877754 444444  6655433 23333333344


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC---CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCC
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD---KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDD  355 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d  355 (406)
                      ...|+|                  +|.+++..+.+   ..|.+||+.++... .+... .......|+|||++|+.++.+
T Consensus       335 ~~~~Sp------------------DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~  394 (429)
T PRK03629        335 DADVSS------------------DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQ  394 (429)
T ss_pred             CEEECC------------------CCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcC
Confidence            566666                  46667665543   35888999887643 33221 123467899999999988877


Q ss_pred             Ce---EEEEeCCCCccceeeccccceEEEEEEeCC
Q psy226          356 KT---LRVWDTANKRNMKTLEAHSHFVTSLDFHRA  387 (406)
Q Consensus       356 ~~---i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~  387 (406)
                      +.   ++++++ ++.....+.+|.+.+...+|+|-
T Consensus       395 ~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        395 GMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence            64   677776 45566777778888899999873

>KOG2111|consensus

Probab=99.72  E-value=7.2e-15  Score=125.30  Aligned_cols=235  Identities=14%  Similarity=0.270  Sum_probs=160.7

Q ss_pred             eeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEE-EEEeCC------CcEEEEEcCCCe
Q psy226          151 VQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFV-LSASRD------KTIKMWEVATGY  223 (406)
Q Consensus       151 V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~d------~~i~iwd~~~~~  223 (406)
                      ..+++|+.|..-+++|..+| .+||+.+..+.....+.+...+.-+...-..++| ++|+.+      ..|.|||-....
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~   86 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER   86 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence            44599999988888887666 8999987544322222222222111111123444 345443      579999977777


Q ss_pred             EEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCC-CccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCC
Q psy226          224 CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA-TKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQG  302 (406)
Q Consensus       224 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  302 (406)
                      ++..+. ...+|..+.+.++.  ++.. ..+.|.||.+. ..+.+..+.....|---++..|...               
T Consensus        87 ~i~el~-f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~---------------  147 (346)
T KOG2111|consen   87 CIIELS-FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN---------------  147 (346)
T ss_pred             EEEEEE-eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCC---------------
Confidence            777664 45779999998763  4433 46789999987 3444444332221111222333211               


Q ss_pred             CCCEEEE-EeCCCcEEEEECCCCeE--EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCccceeecc--cc
Q psy226          303 GGPYLAT-GSRDKTIKLWDVGSGSL--LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT-LRVWDTANKRNMKTLEA--HS  376 (406)
Q Consensus       303 ~~~~l~s-~~~d~~i~lwd~~~~~~--~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~-i~vwd~~~~~~~~~l~~--h~  376 (406)
                       ..+||. |-.-|+|+|-|+.....  ...+.+|.+.|.+++.+.+|..|||+|..|+ |||||..++..++++.-  ..
T Consensus       148 -k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~  226 (346)
T KOG2111|consen  148 -KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR  226 (346)
T ss_pred             -ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch
Confidence             123333 34468899999876554  4678899999999999999999999999987 79999999999998842  23


Q ss_pred             ceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          377 HFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       377 ~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ..|.+++|+|+..+||++|.-|++.||.++
T Consensus       227 A~iy~iaFSp~~s~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  227 ADIYCIAFSPNSSWLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             heEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence            469999999999999999999999999874

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=4.1e-15  Score=142.16  Aligned_cols=234  Identities=17%  Similarity=0.172  Sum_probs=159.1

Q ss_pred             CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCE
Q psy226          128 ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD---MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDF  204 (406)
Q Consensus       128 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  204 (406)
                      ..|.+||..... .+.+..|...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++.. .+........+.+|+|+|+.
T Consensus       184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCE
Confidence            368999986543 44566677789999999999999987743   46999999877653 33334444567899999987


Q ss_pred             EE-EEeCCC--cEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC-CCe--EEEEeCCCccceeEEecCCceEE
Q psy226          205 VL-SASRDK--TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN-DHT--ARVWSLATKETKAELRGHDHTVE  278 (406)
Q Consensus       205 l~-s~s~d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~--v~vwd~~~~~~~~~~~~~~~~v~  278 (406)
                      |+ +.+.++  .|.+||+.++.. ..+..+.......+|+|||+.|+.++. ++.  |.++|+.++... .+..+.....
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~  339 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNA  339 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence            65 555555  599999988764 445555555567899999998887764 444  666676555432 2222222333


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC---cEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCC
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK---TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDD  355 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d  355 (406)
                      ...|+|                  +|.+++..+.++   .|.+||+.++... .+. +........|+|+|++|+..+.+
T Consensus       340 ~~~~Sp------------------DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~  399 (433)
T PRK04922        340 RASVSP------------------DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE  399 (433)
T ss_pred             CEEECC------------------CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec
Confidence            567776                  466676655433   6999999887654 332 33345567999999988766653


Q ss_pred             ---CeEEEEeCCCCccceeeccccceEEEEEEeC
Q psy226          356 ---KTLRVWDTANKRNMKTLEAHSHFVTSLDFHR  386 (406)
Q Consensus       356 ---~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~  386 (406)
                         +.|.+++.. +.....+..+.+.+...+|+|
T Consensus       400 ~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        400 GGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence               468888875 444555655556677788876

>KOG2139|consensus

Probab=99.71  E-value=3.6e-14  Score=122.99  Aligned_cols=286  Identities=17%  Similarity=0.245  Sum_probs=175.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCC-CEEEEEeCCCcEEEEeCCC-C---
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSG-KLLVSCSADMSLKLWDMST-Y---  180 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g-~~l~sgs~d~~i~vwd~~~-~---  180 (406)
                      ..+..++||+.-.-+|++..|.+|++||-... ....++ .....|+|++|-|.+ .-|+.|+..| |.+|..+. .   
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence            34667899998888999999999999998773 333444 234679999999964 5677777655 89997642 1   


Q ss_pred             e--------E--EEEEecCCcceEEEEEecCCCEEEEEeC-CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEE
Q psy226          181 Q--------C--LKTMQGHDHNVTGVAFLPNSDFVLSASR-DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLAS  249 (406)
Q Consensus       181 ~--------~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  249 (406)
                      .        +  +..-.|| .+|++|.|++||..+++++. |..|.|||..++.++....-....+.-+.|+|||.+|++
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence            1        1  1122345 58999999999999999875 578999999999887766444566788999999999999


Q ss_pred             EeCCCeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC----
Q psy226          250 CSNDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG----  324 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~----  324 (406)
                      +.-|+..++|+.... ....-.. ....|....|+|.....-+...        ....+.+...++.--+.+-..+    
T Consensus       256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s--------gsp~lysl~f~~~~~~~~~~~~~k~~  326 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS--------GSPRLYSLTFDGEDSVFLRPQSIKRV  326 (445)
T ss_pred             ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc--------CCceEEEEeecCCCccccCcccceee
Confidence            999999999954322 2221111 2337888899985321111000        0111222222221111110000    


Q ss_pred             eEEEEEe------C---CCcCEEEEEEcCCCCEEEEEeCCC--------eEEEEeCCCCccceeec-c--ccceEEEEEE
Q psy226          325 SLLFTLI------G---HDNWVRGVTFHPGGKYLVSCGDDK--------TLRVWDTANKRNMKTLE-A--HSHFVTSLDF  384 (406)
Q Consensus       325 ~~~~~~~------~---h~~~v~~l~~s~~g~~l~sgs~d~--------~i~vwd~~~~~~~~~l~-~--h~~~v~~l~~  384 (406)
                      .++..+.      +   ..+.+.+++|+|.|.+|++.-..+        .|.+||......+.-.- +  ....-.-+.|
T Consensus       327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF  406 (445)
T KOG2139|consen  327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISF  406 (445)
T ss_pred             eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEe
Confidence            0111111      1   135688999999999999865433        36678876543332210 0  0111233445


Q ss_pred             eC---CCCEEEEeeCCCeEEEee
Q psy226          385 HR---AHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       385 ~~---~~~~l~sgs~Dg~v~iw~  404 (406)
                      +|   ++++|..+=.-|.+.-|+
T Consensus       407 ~pl~n~g~lLsiaWsTGriq~yp  429 (445)
T KOG2139|consen  407 GPLKNEGRLLSIAWSTGRIQRYP  429 (445)
T ss_pred             eecccCCcEEEEEeccCceEeee
Confidence            54   345555554556555443

>KOG4497|consensus

Probab=99.70  E-value=6.3e-15  Score=126.11  Aligned_cols=290  Identities=16%  Similarity=0.242  Sum_probs=186.8

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEE-EeCCCcEEEEeCCCCeEEEEEecCC
Q psy226          112 VIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVS-CSADMSLKLWDMSTYQCLKTMQGHD  190 (406)
Q Consensus       112 v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~s-gs~d~~i~vwd~~~~~~~~~~~~h~  190 (406)
                      +.|+|+|+++|+++.- .+.|-|.++-+..+.+. .-+.|.-+.|..+..+++. ...|+.|.+|++...+-...+....
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~   91 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ   91 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence            5799999999999876 77788877765443322 2466778899888876654 5678899999998877777777778


Q ss_pred             cceEEEEEecCCCE-EEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC---ccc
Q psy226          191 HNVTGVAFLPNSDF-VLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT---KET  266 (406)
Q Consensus       191 ~~v~~~~~~p~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~---~~~  266 (406)
                      .++.+++|+|+|+. |.+..-|-.|.+|.+.+..+... ......+..++|+|||++.+.++.-...-..++..   -..
T Consensus        92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            89999999999965 55667789999999988655432 22334457788999998887766432211111110   001


Q ss_pred             eeEEecCCceEEEEEeCCCCCccccccccC--------------CCCCCCCCCEEEEEeCCCcEEEEECCCCe-------
Q psy226          267 KAELRGHDHTVECVAWAPGVASESISEAAG--------------RPPGQGGGPYLATGSRDKTIKLWDVGSGS-------  325 (406)
Q Consensus       267 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~s~~~d~~i~lwd~~~~~-------  325 (406)
                      ...+...+-....+.|+|+.....+.....              .....+.+.+++.|+.|+.+|+.|--+-+       
T Consensus       171 l~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflh  250 (447)
T KOG4497|consen  171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLH  250 (447)
T ss_pred             HHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhcc
Confidence            111111122223333444322211110000              00011247899999999999886521000       


Q ss_pred             -----------------------------------------------------EEEEEe------CCCcCEEEEEEcCCC
Q psy226          326 -----------------------------------------------------LLFTLI------GHDNWVRGVTFHPGG  346 (406)
Q Consensus       326 -----------------------------------------------------~~~~~~------~h~~~v~~l~~s~~g  346 (406)
                                                                           .+..++      .....+.-++|++|.
T Consensus       251 l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds  330 (447)
T KOG4497|consen  251 LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS  330 (447)
T ss_pred             chhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc
Confidence                                                                 000011      011235678999999


Q ss_pred             CEEEEEeCC--CeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          347 KYLVSCGDD--KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       347 ~~l~sgs~d--~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .|+++-.+.  +.+-+||+...+....+. ..++|....|+|..+.|+.+.....+.+|..
T Consensus       331 ~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~p  390 (447)
T KOG4497|consen  331 TYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP  390 (447)
T ss_pred             eEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence            999886543  678999998877655554 4568999999999999988887788888864

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=8e-15  Score=139.71  Aligned_cols=235  Identities=16%  Similarity=0.204  Sum_probs=155.1

Q ss_pred             CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCE
Q psy226          128 ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD---MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDF  204 (406)
Q Consensus       128 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  204 (406)
                      ..|.++|.. |...+.+..+...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++... +......+.+.+|+|+|+.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            457777764 44444555677889999999999999877643   359999998876533 3333445678999999987


Q ss_pred             EE-EEeCCCcEEEEE--cCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC-CCeEEEEeCC--CccceeEEecCCceEE
Q psy226          205 VL-SASRDKTIKMWE--VATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN-DHTARVWSLA--TKETKAELRGHDHTVE  278 (406)
Q Consensus       205 l~-s~s~d~~i~iwd--~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~v~vwd~~--~~~~~~~~~~~~~~v~  278 (406)
                      |+ +.+.++...+|.  +.++. ...+..+........|+|||+.++..+. ++...+|.+.  ++.. ..+........
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~  331 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNT  331 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcC
Confidence            76 567788766665  44443 4555556555667889999998876664 4666666553  3322 12221222222


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC---cEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCC
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK---TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDD  355 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d  355 (406)
                      ...|+|                  +|.+++..+.++   .|.+||+.++.... +.. ........|+|+|++|+.++.+
T Consensus       332 ~~~~Sp------------------DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        332 SPRISP------------------DGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             ceEECC------------------CCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEec
Confidence            345665                  467777766554   59999998876543 322 2334678999999998877654


Q ss_pred             C---eEEEEeCCCCccceeeccccceEEEEEEeCC
Q psy226          356 K---TLRVWDTANKRNMKTLEAHSHFVTSLDFHRA  387 (406)
Q Consensus       356 ~---~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~  387 (406)
                      +   .+++.+. ++.....+..+.+.+...+|+|-
T Consensus       392 ~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        392 GGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence            3   3555566 45555566666667788888874

>KOG1334|consensus

Probab=99.69  E-value=6.2e-16  Score=138.54  Aligned_cols=248  Identities=23%  Similarity=0.400  Sum_probs=185.8

Q ss_pred             EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE-EecCCcceEEEEEecCC--CEEEEEeCCCcEEE
Q psy226          140 YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKT-MQGHDHNVTGVAFLPNS--DFVLSASRDKTIKM  216 (406)
Q Consensus       140 ~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~p~~--~~l~s~s~d~~i~i  216 (406)
                      +...|..|.+.|+.|.|+..|..|++||.|..|.+||+..++.... ..||...|....|.|..  ..+++++.||.+++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            3456789999999999999999999999999999999988765544 46799999999999954  47999999999998


Q ss_pred             EEcC-CCeE--EEEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCCccceeEEe--c-CCc---eEEEEEeCCCC
Q psy226          217 WEVA-TGYC--VKTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKETKAELR--G-HDH---TVECVAWAPGV  286 (406)
Q Consensus       217 wd~~-~~~~--~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~--~-~~~---~v~~~~~~~~~  286 (406)
                      =.+. ++.+  .+.+..|...|..++..|+. .-|.+++.|+.+.-+|++...+...+.  . +..   ....++..|. 
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~-  292 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR-  292 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC-
Confidence            7663 4443  34567899999999999965 568999999999999998765543332  1 222   2344555542 


Q ss_pred             CccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe------EEEEEeC------CCcCEEEEEEcCCCCEEEEEeC
Q psy226          287 ASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS------LLFTLIG------HDNWVRGVTFHPGGKYLVSCGD  354 (406)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~------~~~~~~~------h~~~v~~l~~s~~g~~l~sgs~  354 (406)
                                      +...+++|+.|.-+++||.+.-.      .+..|..      ..-.|++++|+.++.-|.+.-.
T Consensus       293 ----------------nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn  356 (559)
T KOG1334|consen  293 ----------------NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN  356 (559)
T ss_pred             ----------------CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence                            34579999999999999986422      1222222      1235899999988777777777


Q ss_pred             CCeEEEEeCCC--C----------cccee-eccccc--eEEEEE-EeCCCCEEEEeeCCCeEEEee
Q psy226          355 DKTLRVWDTAN--K----------RNMKT-LEAHSH--FVTSLD-FHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       355 d~~i~vwd~~~--~----------~~~~~-l~~h~~--~v~~l~-~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      |-.|+++.-..  +          ..++. +++|.+  .|..+- |-|...|++|||.=|.|.||+
T Consensus       357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence            88899995432  2          22333 667754  366666 468889999999999999998

>KOG0322|consensus

Probab=99.69  E-value=7.9e-16  Score=127.80  Aligned_cols=238  Identities=18%  Similarity=0.211  Sum_probs=161.8

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCC-----C----EEEEEeCCC-cEE
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG-----K----LLVSCSADM-SLK  173 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g-----~----~l~sgs~d~-~i~  173 (406)
                      -|..+|+.+..-|. ..|.+-+.|+.+.+|++.-+.+..   -|.-.++++.|++..     +    .++.=+... .+.
T Consensus        54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h  129 (323)
T KOG0322|consen   54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH  129 (323)
T ss_pred             hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhh
Confidence            36678888888886 677888899999999988765543   355567777776531     1    111110000 011


Q ss_pred             EEeCCCCeEEEEE----ecCCcceEEEEEec-CCC--EEEEEeCCCcEEEEEcCCCeEE----------EEeecCCccEE
Q psy226          174 LWDMSTYQCLKTM----QGHDHNVTGVAFLP-NSD--FVLSASRDKTIKMWEVATGYCV----------KTLTGHREWVR  236 (406)
Q Consensus       174 vwd~~~~~~~~~~----~~h~~~v~~~~~~p-~~~--~l~s~s~d~~i~iwd~~~~~~~----------~~~~~~~~~v~  236 (406)
                      +-|......+...    .+..+.+.+..+.. ++.  ++++|-.+|.+.+||+.++..+          .....|..+|.
T Consensus       130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvl  209 (323)
T KOG0322|consen  130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVL  209 (323)
T ss_pred             hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcce
Confidence            1121111111111    12234566655432 233  4677888999999999987333          33456889999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCccc----eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC
Q psy226          237 QIKVSPDGTLLASCSNDHTARVWSLATKET----KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR  312 (406)
Q Consensus       237 ~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  312 (406)
                      ++.+.+.-..=++|+.+..+..|++.....    ..+.......|..+...|                  +++++|+++.
T Consensus       210 sldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp------------------D~KIlATAGW  271 (323)
T KOG0322|consen  210 SLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP------------------DGKILATAGW  271 (323)
T ss_pred             eeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc------------------CCcEEeeccc
Confidence            999988766667888888999998864321    111111222333333333                  6889999999


Q ss_pred             CCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy226          313 DKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       313 d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~  363 (406)
                      |+.||+|..++.+++..+.-|...|.+++|+|+...+|++|.|++|.+|++
T Consensus       272 D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  272 DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999999999999999999999999986

>KOG3881|consensus

Probab=99.68  E-value=1.3e-14  Score=126.87  Aligned_cols=259  Identities=16%  Similarity=0.287  Sum_probs=189.3

Q ss_pred             CCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCcEEEE------ecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          107 SPVIKVIFHPVF--SLMASCSEDATIRLWDYETGEYERA------LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       107 ~~V~~v~~~p~~--~~latgs~dg~v~vwd~~~~~~~~~------~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ..|..++|.-++  ..+..++.|..+..+++....+...      ....+.+|..++..  ...|++|-.+|.+.+|...
T Consensus        56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k  133 (412)
T KOG3881|consen   56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK  133 (412)
T ss_pred             hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence            456666665443  4666666777888887776554333      34455677777664  3468888899999999887


Q ss_pred             CCe----EEEEEecCCcceEEEEEecCCC-EEEEEeCC--CcEEEEEcCCCeEEEEeec---------CCccEEEEEECC
Q psy226          179 TYQ----CLKTMQGHDHNVTGVAFLPNSD-FVLSASRD--KTIKMWEVATGYCVKTLTG---------HREWVRQIKVSP  242 (406)
Q Consensus       179 ~~~----~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d--~~i~iwd~~~~~~~~~~~~---------~~~~v~~l~~~~  242 (406)
                      .+.    .+..+..+ ..+..+.-+|... .+++|+..  ..+++||+.+...+..-+.         -+-|++.+.|-+
T Consensus       134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~  212 (412)
T KOG3881|consen  134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE  212 (412)
T ss_pred             CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence            332    22233322 3455666666554 45568888  8899999988754443321         134678899988


Q ss_pred             C--CCEEEEEeCCCeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEE
Q psy226          243 D--GTLLASCSNDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLW  319 (406)
Q Consensus       243 ~--~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lw  319 (406)
                      .  ...||+++.-+.+|+||.+.+ +++..+..-+.++.++...|                  .+.++++|..-+.+..|
T Consensus       213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p------------------~gn~Iy~gn~~g~l~~F  274 (412)
T KOG3881|consen  213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP------------------SGNFIYTGNTKGQLAKF  274 (412)
T ss_pred             CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC------------------CCcEEEEecccchhhee
Confidence            7  889999999999999999865 45667777778888888777                  47889999999999999


Q ss_pred             ECCCCeEEEE-EeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCC
Q psy226          320 DVGSGSLLFT-LIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA  387 (406)
Q Consensus       320 d~~~~~~~~~-~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~  387 (406)
                      |++.++.+.. +.+..+.|+++..+|.+++|++||-|+.+||+|+.+.+.+...-. ...++++-+.++
T Consensus       275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~  342 (412)
T KOG3881|consen  275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD  342 (412)
T ss_pred             cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence            9999998876 888899999999999999999999999999999998666543321 223455555443

>KOG1240|consensus

Probab=99.68  E-value=1.6e-14  Score=142.48  Aligned_cols=250  Identities=18%  Similarity=0.252  Sum_probs=174.5

Q ss_pred             CcEEEEecccccCeeeEEECCCC-CEEEEEeCCCcEEEEeCCC-------CeEEEEEecCCcceEEEEEecCCCEEEEEe
Q psy226          138 GEYERALHGHLDSVQDIAFDQSG-KLLVSCSADMSLKLWDMST-------YQCLKTMQGHDHNVTGVAFLPNSDFVLSAS  209 (406)
Q Consensus       138 ~~~~~~~~~h~~~V~~l~~~~~g-~~l~sgs~d~~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s  209 (406)
                      |.++..++.|...|..++.++.. .+++|||.||+||+||...       .+...++.-....+.++.+.+.++.++.++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            45666777888889898887754 8999999999999999753       223334444567888999999999999999


Q ss_pred             CCCcEEEEEcCCC-------eEEEEeecCC--ccEEEEEECC-CCC-EEEEEeCCCeEEEEeCCCccceeEEe--cCCce
Q psy226          210 RDKTIKMWEVATG-------YCVKTLTGHR--EWVRQIKVSP-DGT-LLASCSNDHTARVWSLATKETKAELR--GHDHT  276 (406)
Q Consensus       210 ~d~~i~iwd~~~~-------~~~~~~~~~~--~~v~~l~~~~-~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~  276 (406)
                      .||.|++.++...       .+......+.  ..|..-++.. .+. .++.+..-+.|..||++.......++  ...+.
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence            9999999998652       1111222221  2233333332 233 67888888999999998765543333  23456


Q ss_pred             EEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-CCCcCEEEEEEcCC---CCEEEEE
Q psy226          277 VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI-GHDNWVRGVTFHPG---GKYLVSC  352 (406)
Q Consensus       277 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~-~h~~~v~~l~~s~~---g~~l~sg  352 (406)
                      |.+++.+|                  .+.+++.|+..|.+-+||++-+.++.... ++..+++.+..+|-   ....+++
T Consensus      1198 vTSi~idp------------------~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1198 VTSIVIDP------------------WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred             eeEEEecC------------------CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence            88888877                  46799999999999999999887776543 24467887777763   2455544


Q ss_pred             -e-CCCeEEEEeCCCCccceeeccc-------------------cceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          353 -G-DDKTLRVWDTANKRNMKTLEAH-------------------SHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       353 -s-~d~~i~vwd~~~~~~~~~l~~h-------------------~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                       + ..+.|.+|++.++.+-.++-.-                   .-......+..-+.++.+|+.|..|+.||.
T Consensus      1260 ~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             cccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence             4 5788999999988665554321                   001122334445578999999999999995

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=5.6e-14  Score=134.48  Aligned_cols=234  Identities=16%  Similarity=0.169  Sum_probs=159.2

Q ss_pred             CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeC---CCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCE
Q psy226          128 ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSA---DMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDF  204 (406)
Q Consensus       128 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~---d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  204 (406)
                      ..|.++|..+. ..+.+..|...+.+..|+|||+.|+..+.   +..|.+||+.+++. ..+..+...+.+.+|+|+|+.
T Consensus       182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCE
Confidence            47888887544 44556678889999999999999887764   46899999988765 344456667788999999987


Q ss_pred             EE-EEeCCCc--EEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC-CC--eEEEEeCCCccceeEEecCCceEE
Q psy226          205 VL-SASRDKT--IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN-DH--TARVWSLATKETKAELRGHDHTVE  278 (406)
Q Consensus       205 l~-s~s~d~~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~v~  278 (406)
                      |+ +.+.++.  |.+||+.++.. ..+..+........|+|||+.++..+. +|  .|.++|+..+... .+..+...+.
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~  337 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS  337 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc
Confidence            65 5566655  77779887754 445566666777899999998887764 33  5788887655433 3333334445


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC---CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCC
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD---KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDD  355 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d  355 (406)
                      ...|+|                  +|.+++..+.+   ..|.+||+..+.. ..+. ....+....|+|||++|+..+.+
T Consensus       338 ~~~~Sp------------------dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        338 TPVWSP------------------RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             CeEECC------------------CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence            567777                  46667665543   3588889865443 3332 22346778999999998765432


Q ss_pred             ------CeEEEEeCCCCccceeeccccceEEEEEEeCC
Q psy226          356 ------KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA  387 (406)
Q Consensus       356 ------~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~  387 (406)
                            ..+++.|+..+.. ..+.. ...+...+|+|-
T Consensus       398 ~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp~  433 (435)
T PRK05137        398 PGSGGAPKLYTVDLTGRNE-REVPT-PGDASDPAWSPL  433 (435)
T ss_pred             CCCCCcceEEEEECCCCce-EEccC-CCCccCcccCCC
Confidence                  3678888765443 44442 334667778764

>KOG1523|consensus

Probab=99.68  E-value=4.5e-15  Score=126.58  Aligned_cols=198  Identities=18%  Similarity=0.259  Sum_probs=161.4

Q ss_pred             CCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC---eEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCc-
Q psy226          189 HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG---YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK-  264 (406)
Q Consensus       189 h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~-  264 (406)
                      --.+|+|.+|+++...++.+-....|.||.....   +..+++..|...|+.++|+|..+.|++|+.|...+||....+ 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            3468999999999999999999999999987654   367888999999999999999999999999999999998433 


Q ss_pred             --cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE----EEEEeCCCcCEE
Q psy226          265 --ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL----LFTLIGHDNWVR  338 (406)
Q Consensus       265 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~----~~~~~~h~~~v~  338 (406)
                        .+...+..+.....++.|+|.                  ++.+++|+.-..|.||-+....-    .+.-+.+.+.|.
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~------------------enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~  150 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPK------------------ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT  150 (361)
T ss_pred             eeccceeEEEeccceeeEeecCc------------------CceEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence              455567778899999999993                  56799999999999987643221    112234567899


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCC------------------CCccceeeccccceEEEEEEeCCCCEEEEeeCCCeE
Q psy226          339 GVTFHPGGKYLVSCGDDKTLRVWDTA------------------NKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTV  400 (406)
Q Consensus       339 ~l~~s~~g~~l~sgs~d~~i~vwd~~------------------~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v  400 (406)
                      +++|+|+.-.|++||.|+..|||..-                  -|+.+.++....+.|..+.|+|+|..|+=.+.|++|
T Consensus       151 sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v  230 (361)
T KOG1523|consen  151 SLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV  230 (361)
T ss_pred             eeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence            99999999999999999999999631                  123344454456789999999999999999999998


Q ss_pred             EEee
Q psy226          401 KVWE  404 (406)
Q Consensus       401 ~iw~  404 (406)
                      .+=|
T Consensus       231 ~~~d  234 (361)
T KOG1523|consen  231 SFVD  234 (361)
T ss_pred             EEee
Confidence            7744

>KOG2321|consensus

Probab=99.67  E-value=3.6e-14  Score=129.80  Aligned_cols=274  Identities=14%  Similarity=0.205  Sum_probs=196.9

Q ss_pred             CCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCcEEEEeccccc--CeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q psy226          105 HRSPVIKVIFHPVFSL-MASCSEDATIRLWDYETGEYERALHGHLD--SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~-latgs~dg~v~vwd~~~~~~~~~~~~h~~--~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~  181 (406)
                      |...-+.|..+|||.+ +|||-.-..|++||+.+-.+.  +..|.+  .|.-.-++.|-..++---.|.+|.+-..... 
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-  126 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-  126 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe-
Confidence            4555678899999986 568888999999999876433  334443  4544445555555555567777766543211 


Q ss_pred             EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy226          182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSL  261 (406)
Q Consensus       182 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~  261 (406)
                       ...++- ...-..++++.-..-|+.++....|.-+++..|.-+..+......++++.+++...+|++|+.+|.|-.||.
T Consensus       127 -hy~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp  204 (703)
T KOG2321|consen  127 -HYRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP  204 (703)
T ss_pred             -eeeeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence             112211 122345666644444555555567888899999988888888889999999999999999999999999999


Q ss_pred             CCccceeEEecC------C-----ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy226          262 ATKETKAELRGH------D-----HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL  330 (406)
Q Consensus       262 ~~~~~~~~~~~~------~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~  330 (406)
                      +.......+...      .     ..|+++.|..                  +|-.+++|+.+|.+.|||+++.+++..-
T Consensus       205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d------------------~gL~~aVGts~G~v~iyDLRa~~pl~~k  266 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD------------------DGLHVAVGTSTGSVLIYDLRASKPLLVK  266 (703)
T ss_pred             hhhhhheeeecccccCCCccccccCcceEEEecC------------------CceeEEeeccCCcEEEEEcccCCceeec
Confidence            987766554321      1     1255555543                  4778999999999999999998887543


Q ss_pred             eCC--CcCEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          331 IGH--DNWVRGVTFHPG--GKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       331 ~~h--~~~v~~l~~s~~--g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                       .|  .-+|..+.|.+.  +..|+|. +...++|||-.+++.+..+.... .++.+++-|++.++.++-.++.+..|-
T Consensus       267 -dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~yy  341 (703)
T KOG2321|consen  267 -DHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHTYY  341 (703)
T ss_pred             -ccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCcceeEE
Confidence             34  457888999775  4556554 34688999999999998887654 499999999999999998887776554

>KOG2111|consensus

Probab=99.67  E-value=4.7e-13  Score=114.33  Aligned_cols=232  Identities=17%  Similarity=0.299  Sum_probs=160.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccc--cCeeeEEECCCCCEE-EEEeCC------CcEEEEeCCC
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHL--DSVQDIAFDQSGKLL-VSCSAD------MSLKLWDMST  179 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~--~~V~~l~~~~~g~~l-~sgs~d------~~i~vwd~~~  179 (406)
                      ...++|+.|..-++.|..+| .+||+.+.-+.......+.  -.+..+-|-  .++| ++|+.+      ..+.|||=..
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEeccc
Confidence            34589999999988887665 8999877532211111111  122223332  2333 344443      4699999666


Q ss_pred             CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC-CeEEEEeecCC--ccEEEEEECCCCCEEEE-EeCCCe
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT-GYCVKTLTGHR--EWVRQIKVSPDGTLLAS-CSNDHT  255 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~--~~v~~l~~~~~~~~l~s-~~~d~~  255 (406)
                      ..++.++. -..+|.++.+.++  .|++. ..+.|.+|...+ .+.++.+..-.  ....+++-..+..+||- |-.-|.
T Consensus        85 ~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq  160 (346)
T KOG2111|consen   85 ERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ  160 (346)
T ss_pred             CcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence            77776665 4678999999865  34443 567899999873 34444443222  22333332223344444 445699


Q ss_pred             EEEEeCCCccc--eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCc-EEEEECCCCeEEEEEeC
Q psy226          256 ARVWSLATKET--KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT-IKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       256 v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~lwd~~~~~~~~~~~~  332 (406)
                      |.|-|+.....  ...+..|...|.|++..-                  .|..+|++|..|+ |||||..+|..+.++..
T Consensus       161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~------------------~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  161 VQIVDLASTKPNAPSIINAHDSDIACVALNL------------------QGTLVATASTKGTLIRIFDTEDGTLLQELRR  222 (346)
T ss_pred             EEEEEhhhcCcCCceEEEcccCceeEEEEcC------------------CccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence            99999976554  477889999999999875                  5889999999997 89999999999988864


Q ss_pred             C--CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy226          333 H--DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       333 h--~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~  365 (406)
                      -  ...|.+++|||++.+|++.|+-|+++||.+..
T Consensus       223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            2  34699999999999999999999999998754

>KOG1409|consensus

Probab=99.67  E-value=1.1e-14  Score=125.44  Aligned_cols=243  Identities=21%  Similarity=0.407  Sum_probs=180.3

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE-cCCCcEEEEecc-cccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWD-YETGEYERALHG-HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd-~~~~~~~~~~~~-h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      .+.||.+.|+....-|..+-+++.+.|.++|||- .+.+++-..+.. -..+++++.+.++...|+.|-..|++.-+.+.
T Consensus        19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s   98 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS   98 (404)
T ss_pred             hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence            4689999999999999999999999999999995 444555444432 24578999999999999999999999988653


Q ss_pred             ----CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          179 ----TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       179 ----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                          .....+....|...+..+-|+-....+++.+.|..+.---.+.+..+..+.-. .+..++.+.-  .+...|...|
T Consensus        99 edfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~--~~~fvGd~~g  175 (404)
T KOG1409|consen   99 EDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDA--LYAFVGDHSG  175 (404)
T ss_pred             hhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceee--EEEEeccccc
Confidence                34455666789999999999988889999999987754444443322111000 0000111110  1334454555


Q ss_pred             eEEEEeC--CCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe-EEEEEe
Q psy226          255 TARVWSL--ATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS-LLFTLI  331 (406)
Q Consensus       255 ~v~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~-~~~~~~  331 (406)
                      .|.+-.+  ....++..+.+|...+.+..|.|                  ....|.+|+.|..+.+||+.-.+ ....+.
T Consensus       176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~------------------~~~~LfSg~~d~~vi~wdigg~~g~~~el~  237 (404)
T KOG1409|consen  176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDP------------------GQRLLFSGASDHSVIMWDIGGRKGTAYELQ  237 (404)
T ss_pred             ceEEEEEeecCCceEEEEcCcccceEEEEEcC------------------CCcEEEeccccCceEEEeccCCcceeeeec
Confidence            5555443  34456788899999999999998                  35689999999999999996544 345778


Q ss_pred             CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       332 ~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      +|.+.|..+..-+--+.+++++.||.|-+||.+
T Consensus       238 gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  238 GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             cchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            899999999988888999999999999999864

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=6.2e-14  Score=133.48  Aligned_cols=221  Identities=18%  Similarity=0.196  Sum_probs=151.8

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEE-eCCC--cEEE
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCS---EDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSC-SADM--SLKL  174 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs---~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sg-s~d~--~i~v  174 (406)
                      .+..+..++...+|+|||+.||..+   .+..|.+||+.+++.... ....+.+.++.|+|||+.|+.. +.++  .|.+
T Consensus       193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~  271 (429)
T PRK03629        193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  271 (429)
T ss_pred             EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence            3445667899999999999888654   245799999988864432 2233445678999999988754 4454  5888


Q ss_pred             EeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC-CcEEE--EEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe
Q psy226          175 WDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD-KTIKM--WEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       175 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d-~~i~i--wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                      ||+.+++... +..+...+....|+|+|+.|+..+.+ +...+  +|+.++.. ..+..+........|+|||++++..+
T Consensus       272 ~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~  349 (429)
T PRK03629        272 MDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVS  349 (429)
T ss_pred             EECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEE
Confidence            9998876543 33444567889999999988776654 44444  46666643 33444444556788999999988766


Q ss_pred             CC---CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCc---EEEEECCCCe
Q psy226          252 ND---HTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT---IKLWDVGSGS  325 (406)
Q Consensus       252 ~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~---i~lwd~~~~~  325 (406)
                      .+   ..|.+||+.++... .+.. ........|+|                  +|.+++.++.++.   +.++++ +|.
T Consensus       350 ~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~Sp------------------DG~~i~~~s~~~~~~~l~~~~~-~G~  408 (429)
T PRK03629        350 SNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAP------------------NGTMVIYSSSQGMGSVLNLVST-DGR  408 (429)
T ss_pred             ccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECC------------------CCCEEEEEEcCCCceEEEEEEC-CCC
Confidence            43   35888998776533 2221 11223445555                  5778888887764   677777 566


Q ss_pred             EEEEEeCCCcCEEEEEEcCC
Q psy226          326 LLFTLIGHDNWVRGVTFHPG  345 (406)
Q Consensus       326 ~~~~~~~h~~~v~~l~~s~~  345 (406)
                      ....+.+|.+.+...+|+|-
T Consensus       409 ~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        409 FKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CeEECccCCCCcCCcccCCC
Confidence            66777888888999999873

>KOG2394|consensus

Probab=99.65  E-value=4.3e-15  Score=134.71  Aligned_cols=170  Identities=25%  Similarity=0.450  Sum_probs=133.5

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCeEEEEE----ecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCC----------
Q psy226          157 DQSGKLLVSCSADMSLKLWDMSTYQCLKTM----QGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVAT----------  221 (406)
Q Consensus       157 ~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~----~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~----------  221 (406)
                      .+.+--|+.|-.-|.|.+.|....+..+.+    .-....|+++.|.|.++ .++++-.+|.+.+||...          
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            345667888888899998887542211111    11246899999999665 566677899999997521          


Q ss_pred             ----Ce--EEEEeec------------CCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeC
Q psy226          222 ----GY--CVKTLTG------------HREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWA  283 (406)
Q Consensus       222 ----~~--~~~~~~~------------~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~  283 (406)
                          +.  .+.+-+.            -...|+..+|+|||++||+.+.||.+||||+.+.+.+..++..-....|+.|+
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence                11  1111111            12357889999999999999999999999999988888888778889999999


Q ss_pred             CCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcC
Q psy226          284 PGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHP  344 (406)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~  344 (406)
                      |                  +|+|+++|+.|..|.||.+..++.+..-.+|.+||+.|+|+|
T Consensus       342 P------------------DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  342 P------------------DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             C------------------CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            9                  589999999999999999999999999999999999999998

>KOG3881|consensus

Probab=99.65  E-value=2.2e-14  Score=125.53  Aligned_cols=238  Identities=14%  Similarity=0.274  Sum_probs=174.0

Q ss_pred             ccCeeeEEECCCC--CEEEEEeCCCcEEEEeCCCCeEEEE------EecCCcceEEEEEecCCCEEEEEeCCCcEEEEEc
Q psy226          148 LDSVQDIAFDQSG--KLLVSCSADMSLKLWDMSTYQCLKT------MQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEV  219 (406)
Q Consensus       148 ~~~V~~l~~~~~g--~~l~sgs~d~~i~vwd~~~~~~~~~------~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~  219 (406)
                      ...|.+++|..++  ..|..++.|..+..+++....+...      ..+...+|.+++..  ...|++|-.+|.+.+|..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence            4567888887655  4566666788888887766554333      33445667666654  457888999999999998


Q ss_pred             CCCe----EEEEeecCCccEEEEEECCCC-CEEEEEeCC--CeEEEEeCCCccceeEEecCCc-----------eEEEEE
Q psy226          220 ATGY----CVKTLTGHREWVRQIKVSPDG-TLLASCSND--HTARVWSLATKETKAELRGHDH-----------TVECVA  281 (406)
Q Consensus       220 ~~~~----~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~-----------~v~~~~  281 (406)
                      ..+-    ....+..+ ..+..+.-+|.. ..+++|+..  .-+.+||+.....+  +.+..-           .+..+.
T Consensus       133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee--eeccCCCCccccceeeeeeccce
Confidence            7432    11222222 234445555544 455668888  88999999876433  322111           123334


Q ss_pred             eCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe-EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy226          282 WAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS-LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRV  360 (406)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~-~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~v  360 (406)
                      |.|+.                ....|++++.-+++|+||.+.++ ++..|.--++.++++...|+|++|++|..-|.+..
T Consensus       210 Fl~g~----------------~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~  273 (412)
T KOG3881|consen  210 FLEGS----------------PNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAK  273 (412)
T ss_pred             ecCCC----------------CCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhhe
Confidence            44321                24579999999999999998764 67777777889999999999999999999999999


Q ss_pred             EeCCCCcccee-eccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          361 WDTANKRNMKT-LEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       361 wd~~~~~~~~~-l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ||.+.++.... +.+-.+.|+++..||.+++||+||.|..|+|+|.+
T Consensus       274 FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  274 FDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             ecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence            99999887766 78889999999999999999999999999999964

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1.3e-13  Score=131.87  Aligned_cols=221  Identities=20%  Similarity=0.249  Sum_probs=149.6

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEE-EEeCCC--cEE
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSED---ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV-SCSADM--SLK  173 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~d---g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~-sgs~d~--~i~  173 (406)
                      ..+..|..++...+|+|+++.|+..+.+   ..|.+||+.+++... +..+.+...+..|+|+|+.|+ +.+.++  .|.
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy  275 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY  275 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence            3455677889999999999999987743   469999998887543 333444556789999998775 455555  599


Q ss_pred             EEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeC-CCc--EEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEE
Q psy226          174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR-DKT--IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASC  250 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-d~~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  250 (406)
                      +||+.+++. ..+..+.......+|+|+|+.|+.++. ++.  |.++|+.++... .+..+.......+|+|+|+.++..
T Consensus       276 ~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~  353 (433)
T PRK04922        276 VMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMV  353 (433)
T ss_pred             EEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEE
Confidence            999988764 345555555567899999998887664 444  666677666543 233333445568999999999876


Q ss_pred             eCCC---eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC---CcEEEEECCCC
Q psy226          251 SNDH---TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD---KTIKLWDVGSG  324 (406)
Q Consensus       251 ~~d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~lwd~~~~  324 (406)
                      +.++   .|.+||+.++... .+. +........|+|                  +|.+++..+.+   +.|.++++. +
T Consensus       354 ~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~sp------------------dG~~i~~~s~~~g~~~L~~~~~~-g  412 (433)
T PRK04922        354 HGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAP------------------NGSMVLYATREGGRGVLAAVSTD-G  412 (433)
T ss_pred             ECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECC------------------CCCEEEEEEecCCceEEEEEECC-C
Confidence            5443   6899999776543 222 222334456666                  46666665543   357778874 4


Q ss_pred             eEEEEEeCCCcCEEEEEEcC
Q psy226          325 SLLFTLIGHDNWVRGVTFHP  344 (406)
Q Consensus       325 ~~~~~~~~h~~~v~~l~~s~  344 (406)
                      .....+..+.+.+...+|+|
T Consensus       413 ~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        413 RVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CceEEcccCCCCCCCCccCC
Confidence            44555555566677778876

>KOG0974|consensus

Probab=99.63  E-value=2.3e-14  Score=139.45  Aligned_cols=270  Identities=20%  Similarity=0.303  Sum_probs=190.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe------cccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERAL------HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~------~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      |-+|+++.++-.  .+|.+| ...-|.+||+..+..+..+      ..|...=.--   -.+.+++++..-+-+..=+..
T Consensus         6 ~~~~l~~~~~~~--~~llag-~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~   79 (967)
T KOG0974|consen    6 SLGPLNLPQLVS--DYLLAG-SGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEAS   79 (967)
T ss_pred             ccccccchhhcc--ceeeec-CCCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchh
Confidence            445666666544  455544 3457999999988654433      2341100000   123455555544433332221


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCc----cEEEEEECCCCCEEEEEeCCC
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE----WVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~----~v~~l~~~~~~~~l~s~~~d~  254 (406)
                       .+....+   ...|....+.-....++.+..+..+.+||...+.....+.....    ...-+-++++.-++++|+.-+
T Consensus        80 -~~~~~~~---s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~  155 (967)
T KOG0974|consen   80 -NQIIERF---SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFG  155 (967)
T ss_pred             -hhhhhhc---cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccc
Confidence             1111122   23344445555667888888999999999987765554432221    122344577778999999999


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE-EEeCC
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF-TLIGH  333 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~-~~~~h  333 (406)
                      .|.+|+....+....+.+|+..+-++.|+.                  +|.++++.|+|+++|+|++.+.+.+. +.-+|
T Consensus       156 ~iivW~~~~dn~p~~l~GHeG~iF~i~~s~------------------dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH  217 (967)
T KOG0974|consen  156 EIIVWKPHEDNKPIRLKGHEGSIFSIVTSL------------------DGRYIASVSDDRSIRLWPIDSREVLGCTGFGH  217 (967)
T ss_pred             cEEEEeccccCCcceecccCCceEEEEEcc------------------CCcEEEEEecCcceeeeecccccccCcccccc
Confidence            999999975444556899999999999976                  58899999999999999999887665 67789


Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccc-eEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          334 DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSH-FVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       334 ~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~-~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +..|..++|+|+  .++|++.|.+.++|+.+ +..+.++..|.. .|..++.++....++|++.||.+++|++
T Consensus       218 saRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  218 SARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             cceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence            999999999998  99999999999999754 444557777744 5999999999999999999999999986

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.63  E-value=1.5e-12  Score=120.60  Aligned_cols=265  Identities=17%  Similarity=0.171  Sum_probs=171.7

Q ss_pred             EEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecC
Q psy226          122 ASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPN  201 (406)
Q Consensus       122 atgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~  201 (406)
                      ++-..+|.|.|.|..+.+....+......-..+.|+|||+++++++.||.|.++|+.+.+.+.+++.-. ...+++++++
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~D   88 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPD   88 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--T
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCC
Confidence            456678999999999999998887654444457899999999999999999999999999998887644 4678999999


Q ss_pred             CCEEEEEe-CCCcEEEEEcCCCeEEEEeecC-------CccEEEEEECCCCCEEEEEeC-CCeEEEEeCCCcccee-EEe
Q psy226          202 SDFVLSAS-RDKTIKMWEVATGYCVKTLTGH-------REWVRQIKVSPDGTLLASCSN-DHTARVWSLATKETKA-ELR  271 (406)
Q Consensus       202 ~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~-~~~  271 (406)
                      |++++++. .++.+.++|.++.+.++.+...       ...+..+..+|....++..-. .+.|-+.|........ ...
T Consensus        89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i  168 (369)
T PF02239_consen   89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI  168 (369)
T ss_dssp             TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred             CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee
Confidence            99988765 6899999999999888877543       235677888888886665554 4888888876553332 222


Q ss_pred             cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE-EeCCCcEEEEECCCCeEEEEEe----CCCcCEEEEE-----
Q psy226          272 GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT-GSRDKTIKLWDVGSGSLLFTLI----GHDNWVRGVT-----  341 (406)
Q Consensus       272 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~lwd~~~~~~~~~~~----~h~~~v~~l~-----  341 (406)
                      ..........|.|                  +++|++. ...++.|-++|..+++.+..+.    .|...+..+-     
T Consensus       169 ~~g~~~~D~~~dp------------------dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g  230 (369)
T PF02239_consen  169 KVGRFPHDGGFDP------------------DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFG  230 (369)
T ss_dssp             E--TTEEEEEE-T------------------TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTE
T ss_pred             cccccccccccCc------------------ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcc
Confidence            2233445566766                  3566554 5567789999999988776543    1333333321     


Q ss_pred             --E--cCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEe----eCCCeEEEeecC
Q psy226          342 --F--HPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG----SVDKTVKVWECR  406 (406)
Q Consensus       342 --~--s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sg----s~Dg~v~iw~~~  406 (406)
                        |  ...+.+.++.-....+.+||..+.+.++++...... .-+.-||++++|...    ...++|.++|.+
T Consensus       231 ~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~  302 (369)
T PF02239_consen  231 PVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK  302 (369)
T ss_dssp             EEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred             eEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence              2  112333322222335668898889999999877666 567789999999887    455789998853

...

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.6e-13  Score=130.82  Aligned_cols=221  Identities=20%  Similarity=0.245  Sum_probs=147.0

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEE-EEeCCCcEEEEe
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSED---ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV-SCSADMSLKLWD  176 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~d---g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~-sgs~d~~i~vwd  176 (406)
                      .+..+..++.+.+|+|+++.|+..+.+   ..|.+||+.+++... +....+.+.+.+|+|||+.|+ +.+.++...||.
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT  268 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence            345677889999999999999877643   359999999887543 333345567899999999876 567788767765


Q ss_pred             --CCCCeEEEEEecCCcceEEEEEecCCCEEEEEeC-CCcEEEEEc--CCCeEEEEeecCCccEEEEEECCCCCEEEEEe
Q psy226          177 --MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR-DKTIKMWEV--ATGYCVKTLTGHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       177 --~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-d~~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                        +.++. ...+..+........|+|+|+.|+..+. ++...+|.+  .++.. ..+..+.......+|+|+|++++..+
T Consensus       269 ~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s  346 (427)
T PRK02889        269 VNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYIS  346 (427)
T ss_pred             EECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEE
Confidence              44443 4455555555677889999998876554 466666654  44432 22222233345678999999998877


Q ss_pred             CCC---eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC---cEEEEECCCCe
Q psy226          252 NDH---TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK---TIKLWDVGSGS  325 (406)
Q Consensus       252 ~d~---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~lwd~~~~~  325 (406)
                      .++   .|.+||+.++.... +... .......|+|                  +|.+|+.++.++   .+.+.++ ++.
T Consensus       347 ~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~sp------------------dg~~l~~~~~~~g~~~l~~~~~-~g~  405 (427)
T PRK02889        347 RVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAP------------------NGRYILYATQQGGRSVLAAVSS-DGR  405 (427)
T ss_pred             ccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECC------------------CCCEEEEEEecCCCEEEEEEEC-CCC
Confidence            654   69999998765433 2221 2234566776                  466666666544   3555566 455


Q ss_pred             EEEEEeCCCcCEEEEEEcCC
Q psy226          326 LLFTLIGHDNWVRGVTFHPG  345 (406)
Q Consensus       326 ~~~~~~~h~~~v~~l~~s~~  345 (406)
                      ....+..+.+.+...+|+|-
T Consensus       406 ~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        406 IKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ceEEeecCCCCCCCCccCCC
Confidence            55566666667777888873

>KOG4497|consensus

Probab=99.62  E-value=7.7e-13  Score=113.51  Aligned_cols=288  Identities=20%  Similarity=0.339  Sum_probs=184.3

Q ss_pred             CeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEE
Q psy226          108 PVIKVIFHPVFSLM-ASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL-VSCSADMSLKLWDMSTYQCLKT  185 (406)
Q Consensus       108 ~V~~v~~~p~~~~l-atgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l-~sgs~d~~i~vwd~~~~~~~~~  185 (406)
                      .|.-+.|..+.-++ .....|+.|.+|++...+.-..+.....++.++.|+|+|+.+ .+..-|-.|.+|.+.+.++. .
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~  128 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-L  128 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-E
Confidence            45556677666544 456789999999999988888888888899999999999655 55566889999999876543 3


Q ss_pred             EecCCcceEEEEEecCCCEEEEEeCC------------------------------------CcEEEEEcCCCeEEEEee
Q psy226          186 MQGHDHNVTGVAFLPNSDFVLSASRD------------------------------------KTIKMWEVATGYCVKTLT  229 (406)
Q Consensus       186 ~~~h~~~v~~~~~~p~~~~l~s~s~d------------------------------------~~i~iwd~~~~~~~~~~~  229 (406)
                      ++-....+..++|+|+|++.+.+++-                                    ..+.+||-.-...+....
T Consensus       129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe  208 (447)
T KOG4497|consen  129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE  208 (447)
T ss_pred             ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence            34345667889999999887766431                                    223344432222221111


Q ss_pred             cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe----cCC---------------ceEEEEEeCCCCCccc
Q psy226          230 GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR----GHD---------------HTVECVAWAPGVASES  290 (406)
Q Consensus       230 ~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~----~~~---------------~~v~~~~~~~~~~~~~  290 (406)
                       -.-.+..++|+|.+++++.|+.|+.+||.+--+-+...++-    -|.               -...++.|.|......
T Consensus       209 -~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~  287 (447)
T KOG4497|consen  209 -RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAH  287 (447)
T ss_pred             -eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccC
Confidence             12346788999999999999999999986643322221110    000               0112344444321111


Q ss_pred             cc-------cc-------------cCCC---------CCCCCCCEEEEEeC--CCcEEEEECCCCeEEEEEeCCCcCEEE
Q psy226          291 IS-------EA-------------AGRP---------PGQGGGPYLATGSR--DKTIKLWDVGSGSLLFTLIGHDNWVRG  339 (406)
Q Consensus       291 ~~-------~~-------------~~~~---------~~~~~~~~l~s~~~--d~~i~lwd~~~~~~~~~~~~h~~~v~~  339 (406)
                      +.       ..             ...+         ....+..|+++-.+  -+.+-+||++..+....+ -...+|+.
T Consensus       288 ~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~pira  366 (447)
T KOG4497|consen  288 IWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRA  366 (447)
T ss_pred             ccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeE
Confidence            00       00             0000         11223345554432  246899999876643333 34567999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCe
Q psy226          340 VTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKT  399 (406)
Q Consensus       340 l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~  399 (406)
                      ..|+|....|+.+.....+++|.......+.. ....-.|..+.|+.+|..++-.+.|.-
T Consensus       367 f~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  367 FEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             EEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence            99999988888887778899998766444432 222345999999999999999988863

>KOG2394|consensus

Probab=99.61  E-value=2e-14  Score=130.40  Aligned_cols=170  Identities=19%  Similarity=0.245  Sum_probs=131.9

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCcEEEEec----ccccCeeeEEECCCC-CEEEEEeCCCcEEEEeCCC-----------
Q psy226          116 PVFSLMASCSEDATIRLWDYETGEYERALH----GHLDSVQDIAFDQSG-KLLVSCSADMSLKLWDMST-----------  179 (406)
Q Consensus       116 p~~~~latgs~dg~v~vwd~~~~~~~~~~~----~h~~~V~~l~~~~~g-~~l~sgs~d~~i~vwd~~~-----------  179 (406)
                      |.+--|..|-..|.|.+.|....++.+.+.    --...|+|+.|-|.+ ..++.+-.+|.+.++|..-           
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            345567778888888888866543322221    123689999998855 4566677899999997521           


Q ss_pred             ---CeE--------------EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC
Q psy226          180 ---YQC--------------LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP  242 (406)
Q Consensus       180 ---~~~--------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  242 (406)
                         +..              +..+..-...|...+|+|||.+|++.|.||.+||+|..+.+.+..++..-....|++|+|
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP  342 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence               110              111112245788899999999999999999999999988777666666667789999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCC
Q psy226          243 DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPG  285 (406)
Q Consensus       243 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  285 (406)
                      ||++|++|+.|..|.||.+...+.+..-.+|...|..|+|.|=
T Consensus       343 DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpy  385 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPY  385 (636)
T ss_pred             CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccc
Confidence            9999999999999999999999999999999999999999973

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=1.9e-13  Score=115.19  Aligned_cols=147  Identities=25%  Similarity=0.493  Sum_probs=105.5

Q ss_pred             EEEEECCCCCEEEEEeC---C-------CeEEEEeCCCc-cceeEEec-CCceEEEEEeCCCCCccccccccCCCCCCCC
Q psy226          236 RQIKVSPDGTLLASCSN---D-------HTARVWSLATK-ETKAELRG-HDHTVECVAWAPGVASESISEAAGRPPGQGG  303 (406)
Q Consensus       236 ~~l~~~~~~~~l~s~~~---d-------~~v~vwd~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (406)
                      ..+.|+|+|.+|+.-..   |       +...+|.++.. .+...+.- ...+|..++|+|.                  
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~------------------   70 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN------------------   70 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC------------------
Confidence            34778888877654332   1       23455555322 22333322 3456999999994                  


Q ss_pred             CCEE--EEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCccceeeccccce
Q psy226          304 GPYL--ATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD---DKTLRVWDTANKRNMKTLEAHSHF  378 (406)
Q Consensus       304 ~~~l--~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~---d~~i~vwd~~~~~~~~~l~~h~~~  378 (406)
                      |..+  +.|..++.|.+||++ ++.+..+.  ...+..+.|+|+|++|++|+.   .|.|.+||..+.+.+.+.+ | ..
T Consensus        71 g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~  145 (194)
T PF08662_consen   71 GNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SD  145 (194)
T ss_pred             CCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-Cc
Confidence            4444  334567899999996 66666664  456789999999999999874   3679999999888887765 3 34


Q ss_pred             EEEEEEeCCCCEEEEee------CCCeEEEeec
Q psy226          379 VTSLDFHRAHPYVVTGS------VDKTVKVWEC  405 (406)
Q Consensus       379 v~~l~~~~~~~~l~sgs------~Dg~v~iw~~  405 (406)
                      ++.++|+|+|++|++++      .|..++||++
T Consensus       146 ~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  146 ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             EEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence            78999999999999886      4788999986

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=1.3e-12  Score=125.04  Aligned_cols=203  Identities=13%  Similarity=0.126  Sum_probs=140.1

Q ss_pred             CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeC---CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCE
Q psy226          170 MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR---DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL  246 (406)
Q Consensus       170 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~  246 (406)
                      ..|.++|.... ..+.+..|...+.+.+|+|+|+.|+..+.   +..|.+||+.++... .+..+...+...+|+|||+.
T Consensus       182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            37888888654 34556678889999999999998887664   468999999888653 44555666778899999987


Q ss_pred             EE-EEeCCCe--EEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC-CC--cEEEEE
Q psy226          247 LA-SCSNDHT--ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR-DK--TIKLWD  320 (406)
Q Consensus       247 l~-s~~~d~~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~lwd  320 (406)
                      |+ +.+.++.  |.+||+.++.. ..+..+........|+|                  +|..++..+. ++  .|.+||
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp------------------DG~~i~f~s~~~g~~~Iy~~d  320 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP------------------DGSQIVFESDRSGSPQLYVMN  320 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC------------------CCCEEEEEECCCCCCeEEEEE
Confidence            75 5555655  77778876654 33444544455667777                  4566666553 33  688889


Q ss_pred             CCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeC
Q psy226          321 VGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDD---KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSV  396 (406)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d---~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~  396 (406)
                      +..+... .+..+...+....|+|+|++|+..+.+   ..|.+||..++. ...+.. ...+....|+|+|+.|+..+.
T Consensus       321 ~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        321 ADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             CCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEc
Confidence            8765543 333344556778999999999876543   368888976543 333322 234678899999998876544

>KOG2139|consensus

Probab=99.59  E-value=5.4e-13  Score=115.82  Aligned_cols=224  Identities=20%  Similarity=0.330  Sum_probs=152.8

Q ss_pred             CeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-CCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCC----e
Q psy226          150 SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQG-HDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATG----Y  223 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~----~  223 (406)
                      .+..++|++.-..++++..|-+|++||-+. .+...++. ....|.+++|-|.+. .|+.|...| |.+|.....    .
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r  177 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANR  177 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccc
Confidence            356788888666788999999999999765 44444432 356899999999654 566666654 889976321    1


Q ss_pred             E----------EEEeecCCccEEEEEECCCCCEEEEEeC-CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccc
Q psy226          224 C----------VKTLTGHREWVRQIKVSPDGTLLASCSN-DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESIS  292 (406)
Q Consensus       224 ~----------~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  292 (406)
                      .          +....+| .+|+++.|++||..+++++. |..|.|||..++..+.........+.-+.|+|        
T Consensus       178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP--------  248 (445)
T KOG2139|consen  178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP--------  248 (445)
T ss_pred             ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC--------
Confidence            1          1122344 68999999999999999884 67899999998776544434456677899999        


Q ss_pred             cccCCCCCCCCCCEEEEEeCCCcEEEEECC-CCeEEEEEeCCCcCEEEEEEcCCCCEEE-EEeCCCeEEEEeCC--CCc-
Q psy226          293 EAAGRPPGQGGGPYLATGSRDKTIKLWDVG-SGSLLFTLIGHDNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTA--NKR-  367 (406)
Q Consensus       293 ~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~-~~~~~~~~~~h~~~v~~l~~s~~g~~l~-sgs~d~~i~vwd~~--~~~-  367 (406)
                                ++.+|+++.-|+..++|+.. +-....-..+ .+.|..-+|+|+|++|+ +++..-.++=-...  .+. 
T Consensus       249 ----------dgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~  317 (445)
T KOG2139|consen  249 ----------DGDVLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVF  317 (445)
T ss_pred             ----------CCCEEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccc
Confidence                      47889999999999999543 3333333333 34899999999999865 44444333322111  100 


Q ss_pred             ----------cceeec-----c----ccceEEEEEEeCCCCEEEEee
Q psy226          368 ----------NMKTLE-----A----HSHFVTSLDFHRAHPYVVTGS  395 (406)
Q Consensus       368 ----------~~~~l~-----~----h~~~v~~l~~~~~~~~l~sgs  395 (406)
                                .+..|+     +    -.+.+.+++|+|.|.+||+-=
T Consensus       318 ~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  318 LRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             cCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence                      001111     1    134678999999999999853

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.59  E-value=3.1e-13  Score=113.97  Aligned_cols=147  Identities=16%  Similarity=0.323  Sum_probs=106.4

Q ss_pred             EEEEcCCCCEEEEEeC----------CCcEEEEEcCC-CcEEEEecc-cccCeeeEEECCCCCEEEEE--eCCCcEEEEe
Q psy226          111 KVIFHPVFSLMASCSE----------DATIRLWDYET-GEYERALHG-HLDSVQDIAFDQSGKLLVSC--SADMSLKLWD  176 (406)
Q Consensus       111 ~v~~~p~~~~latgs~----------dg~v~vwd~~~-~~~~~~~~~-h~~~V~~l~~~~~g~~l~sg--s~d~~i~vwd  176 (406)
                      .+.|+|.|..|+.-..          -|...+|-++. +.....+.- ..++|.+++|+|+|+.|++.  ..++.|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            5678888876654322          22344554422 122233332 34579999999999987654  4678999999


Q ss_pred             CCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC---CcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC-
Q psy226          177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD---KTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN-  252 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-  252 (406)
                      +. ++.+..+  +...+..+.|+|+|++|++|+.+   |.|.+||.++...+.....  ..+..++|+|+|++|+++.. 
T Consensus        90 ~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen   90 VK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             Cc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEec
Confidence            96 5555555  35678899999999999998754   6799999998888777643  34789999999999998874 


Q ss_pred             -----CCeEEEEeCC
Q psy226          253 -----DHTARVWSLA  262 (406)
Q Consensus       253 -----d~~v~vwd~~  262 (406)
                           |..++||+..
T Consensus       165 ~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  165 PRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cceeccccEEEEEec
Confidence                 7889999985

>KOG1354|consensus

Probab=99.58  E-value=2.3e-13  Score=117.37  Aligned_cols=269  Identities=18%  Similarity=0.341  Sum_probs=173.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---c--EEEEecccc------------cCeeeEEECCCCC--EEEEE
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETG---E--YERALHGHL------------DSVQDIAFDQSGK--LLVSC  166 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~---~--~~~~~~~h~------------~~V~~l~~~~~g~--~l~sg  166 (406)
                      .+-|.+|.|..+|.+||||..+|.|.++.-...   +  +...++.|.            ..|+.+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            346889999999999999999999999964332   1  233444554            3478899988764  56677


Q ss_pred             eCCCcEEEEeCCCCeEEE-----EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ecCCccEEEEEE
Q psy226          167 SADMSLKLWDMSTYQCLK-----TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL-TGHREWVRQIKV  240 (406)
Q Consensus       167 s~d~~i~vwd~~~~~~~~-----~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~  240 (406)
                      .+|.+|++|.+.......     ...+....+.++..      .+.+..|-.+-      ..+.+.+ ..|+--|+++++
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~ve------a~prRv~aNaHtyhiNSIS~  172 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLEVE------ASPRRVYANAHTYHINSISV  172 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeec------eeeccccceee------eeeeeeccccceeEeeeeee
Confidence            799999999886422111     00111122222221      11111111110      0122222 367788999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCccce---eEEecC-----CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC
Q psy226          241 SPDGTLLASCSNDHTARVWSLATKETK---AELRGH-----DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR  312 (406)
Q Consensus       241 ~~~~~~l~s~~~d~~v~vwd~~~~~~~---~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  312 (406)
                      +.|+..++++ .|=.|.+|++.-....   ..++.+     +..|++..|+|.                 ....++..+.
T Consensus       173 NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~-----------------~cn~f~YSSS  234 (433)
T KOG1354|consen  173 NSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH-----------------HCNVFVYSSS  234 (433)
T ss_pred             cCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh-----------------HccEEEEecC
Confidence            9999999886 5778999998643221   111211     133445555553                 2457888889


Q ss_pred             CCcEEEEECCCCeEE------EEEe----------CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCccceeeccc
Q psy226          313 DKTIKLWDVGSGSLL------FTLI----------GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT-ANKRNMKTLEAH  375 (406)
Q Consensus       313 d~~i~lwd~~~~~~~------~~~~----------~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~-~~~~~~~~l~~h  375 (406)
                      .|+||+-|++...+.      +...          +--..|..+.|+++|+|+++-+. -+|++||+ ...+++.+++.|
T Consensus       235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence            999999999853221      1111          11235889999999999987654 58999999 456677777666


Q ss_pred             cc------------eE---EEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          376 SH------------FV---TSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       376 ~~------------~v---~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ..            .|   ..++|+-++.+++|||....+++|++
T Consensus       314 ~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  314 EYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             HhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence            33            12   45789999999999999999999873

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.56  E-value=4.1e-12  Score=121.45  Aligned_cols=233  Identities=18%  Similarity=0.209  Sum_probs=150.7

Q ss_pred             CCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCC
Q psy226          127 DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD---MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSD  203 (406)
Q Consensus       127 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~  203 (406)
                      ...|.++|...+. .+.+..+...+.+.+|+|+|++|+.++.+   ..|.+||+.+++.. .+..+...+.+++|+|+++
T Consensus       169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence            3457788875443 34455566778899999999999887654   47999999887543 3334555677799999998


Q ss_pred             EEE-EEeCCC--cEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCC-C--eEEEEeCCCccceeEEecCCceE
Q psy226          204 FVL-SASRDK--TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSND-H--TARVWSLATKETKAELRGHDHTV  277 (406)
Q Consensus       204 ~l~-s~s~d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-~--~v~vwd~~~~~~~~~~~~~~~~v  277 (406)
                      .|+ +.+.++  .|.+||+.++.. ..+..+........|+|+|+.|+.++.. +  .|.++|+.++.. ..+..+...+
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~  324 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYN  324 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCc
Confidence            765 444444  588899987754 3344454445567899999988776643 3  577778766543 2333344445


Q ss_pred             EEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC---cEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeC
Q psy226          278 ECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK---TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD  354 (406)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~  354 (406)
                      ....|+|                  ++.+++.++.++   .|.+||+.++... .+... .......|+|+|++|+..+.
T Consensus       325 ~~~~~sp------------------dg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       325 ASPSWSP------------------DGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             cCeEECC------------------CCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEe
Confidence            5566766                  466777777765   7899999876543 22222 22345689999999887766


Q ss_pred             CC---eEEEEeCCCCccceeeccccceEEEEEE
Q psy226          355 DK---TLRVWDTANKRNMKTLEAHSHFVTSLDF  384 (406)
Q Consensus       355 d~---~i~vwd~~~~~~~~~l~~h~~~v~~l~~  384 (406)
                      ++   .+++.+.. +.....+..+.+.+..++|
T Consensus       385 ~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       385 RGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW  416 (417)
T ss_pred             CCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence            53   45555543 3334444433333444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2315|consensus

Probab=99.56  E-value=7.8e-12  Score=114.57  Aligned_cols=273  Identities=14%  Similarity=0.254  Sum_probs=170.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEE-----eCC-----CcEEEE
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSC-----SAD-----MSLKLW  175 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sg-----s~d-----~~i~vw  175 (406)
                      ..+.+..++++.|.++|.+. +..++|++..++..+.+...  ..+.++.|+|.|.+|.+-     ..+     -.+++|
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~  110 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY  110 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence            44567778899888887764 67899999988864443332  278999999999998752     122     357799


Q ss_pred             eCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCC--CEEEE----
Q psy226          176 DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG--TLLAS----  249 (406)
Q Consensus       176 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~--~~l~s----  249 (406)
                      +++++.....+......-++..|++|..+.+- --.+.+.+|++.....+ .-.-|...+..+.++|.+  ..+|+    
T Consensus       111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe  188 (566)
T KOG2315|consen  111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPE  188 (566)
T ss_pred             eeccceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccC
Confidence            99885443333322222257778877543221 12345777776542211 111223334444444432  11111    


Q ss_pred             -EeCCCe---------------------------------------------------------EEEEeCCCccceeEEe
Q psy226          250 -CSNDHT---------------------------------------------------------ARVWSLATKETKAELR  271 (406)
Q Consensus       250 -~~~d~~---------------------------------------------------------v~vwd~~~~~~~~~~~  271 (406)
                       .|.-+.                                                         +++.++........+ 
T Consensus       189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-  267 (566)
T KOG2315|consen  189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-  267 (566)
T ss_pred             CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-
Confidence             122223                                                         333333311111111 


Q ss_pred             cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEE
Q psy226          272 GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVS  351 (406)
Q Consensus       272 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~s  351 (406)
                      ...++|.++.|+|....                --++.|..--.+.|||++ +.+++.+.  +++=.++-|+|.|++|+.
T Consensus       268 ~k~GPVhdv~W~~s~~E----------------F~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~l  328 (566)
T KOG2315|consen  268 LKEGPVHDVTWSPSGRE----------------FAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILL  328 (566)
T ss_pred             CCCCCceEEEECCCCCE----------------EEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEE
Confidence            23577888888874211                123445566789999985 56666654  455678899999999988


Q ss_pred             EeCC---CeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEee------CCCeEEEeec
Q psy226          352 CGDD---KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGS------VDKTVKVWEC  405 (406)
Q Consensus       352 gs~d---~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs------~Dg~v~iw~~  405 (406)
                      +|-+   |.|-|||+.+.+++..+.+-.  .+-.+|+|||.+++|+.      .|..++||+.
T Consensus       329 AGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  329 AGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             eecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            7754   889999999988888887654  45678999999998875      5788999985

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.55  E-value=2.4e-10  Score=105.96  Aligned_cols=267  Identities=16%  Similarity=0.278  Sum_probs=171.5

Q ss_pred             EEEEeCC----CcEEEEEc--CCCcEEEEec-ccccCeeeEEECCCCCEEEEEeC----CCcEEEEeCCC--Ce--EEEE
Q psy226          121 MASCSED----ATIRLWDY--ETGEYERALH-GHLDSVQDIAFDQSGKLLVSCSA----DMSLKLWDMST--YQ--CLKT  185 (406)
Q Consensus       121 latgs~d----g~v~vwd~--~~~~~~~~~~-~h~~~V~~l~~~~~g~~l~sgs~----d~~i~vwd~~~--~~--~~~~  185 (406)
                      ++.|+.+    +.|.+|++  .++++...-. .-.....-|+++|++++|+++..    ++.|..|++..  ++  .+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4455555    68999887  5555433221 23345667999999999998877    46888888764  33  2333


Q ss_pred             EecCCcceEEEEEecCCCEEEEEeC-CCcEEEEEcCC-CeEEEE---ee----------cCCccEEEEEECCCCCEEEEE
Q psy226          186 MQGHDHNVTGVAFLPNSDFVLSASR-DKTIKMWEVAT-GYCVKT---LT----------GHREWVRQIKVSPDGTLLASC  250 (406)
Q Consensus       186 ~~~h~~~v~~~~~~p~~~~l~s~s~-d~~i~iwd~~~-~~~~~~---~~----------~~~~~v~~l~~~~~~~~l~s~  250 (406)
                      ..........++++|++++|+++.. +|+|.++++.. |.....   +.          .......++.++|+|+++++.
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence            3323345567999999999988875 89999999976 433222   11          012346789999999988776


Q ss_pred             e-CCCeEEEEeCCCccc-e---eEEe-cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE-EeCCCcEEEEECC-
Q psy226          251 S-NDHTARVWSLATKET-K---AELR-GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT-GSRDKTIKLWDVG-  322 (406)
Q Consensus       251 ~-~d~~v~vwd~~~~~~-~---~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~lwd~~-  322 (406)
                      . ....|.+|++..... +   ..+. ......+.+.|+|+                  ++++++ .-.++.|.++++. 
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pd------------------g~~~Yv~~e~s~~v~v~~~~~  223 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPD------------------GKYAYVVNELSNTVSVFDYDP  223 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TT------------------SSEEEEEETTTTEEEEEEEET
T ss_pred             ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCC------------------cCEEEEecCCCCcEEEEeecc
Confidence            5 356899999876542 1   1121 22344566777773                  555544 4557789999887 


Q ss_pred             -CCeE--EEEEeC------CCcCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCC--Cc--cceeeccccceEEEEEEeCCC
Q psy226          323 -SGSL--LFTLIG------HDNWVRGVTFHPGGKYLVSCG-DDKTLRVWDTAN--KR--NMKTLEAHSHFVTSLDFHRAH  388 (406)
Q Consensus       323 -~~~~--~~~~~~------h~~~v~~l~~s~~g~~l~sgs-~d~~i~vwd~~~--~~--~~~~l~~h~~~v~~l~~~~~~  388 (406)
                       ++..  +..+..      .......+.++|+|++|+++. .+.+|.+|++..  ++  .+..+.......+.++++|++
T Consensus       224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g  303 (345)
T PF10282_consen  224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG  303 (345)
T ss_dssp             TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS
T ss_pred             cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC
Confidence             4432  222221      123688999999999987654 578999999842  32  333444444457899999999


Q ss_pred             CEEEEee-CCCeEEEeec
Q psy226          389 PYVVTGS-VDKTVKVWEC  405 (406)
Q Consensus       389 ~~l~sgs-~Dg~v~iw~~  405 (406)
                      ++|+++. .++.|.+|+.
T Consensus       304 ~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  304 RYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             SEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEecCCCeEEEEEE
Confidence            9988765 6678998864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.1e-11  Score=118.86  Aligned_cols=234  Identities=15%  Similarity=0.115  Sum_probs=149.0

Q ss_pred             cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEE
Q psy226          129 TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD---MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFV  205 (406)
Q Consensus       129 ~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  205 (406)
                      .|.++|...+.. +.+..+...+....|+|+|+.|+..+.+   ..|.+||+.+++... +......+....|+|+|+.|
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            477778775543 4455567788999999999998876643   368899998876432 33333445578999999977


Q ss_pred             E-EEeCCC--cEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC-CC--eEEEEeCCCccceeEEecCCceEEE
Q psy226          206 L-SASRDK--TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN-DH--TARVWSLATKETKAELRGHDHTVEC  279 (406)
Q Consensus       206 ~-s~s~d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~v~~  279 (406)
                      + +.+.++  .|.+||+.++... .+..+........|+|||+.++..+. ++  .|.++|+.+++... +.........
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~  335 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNAR  335 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccc
Confidence            6 455555  5888899887643 45555555667889999998876654 33  57777776655322 2111111223


Q ss_pred             EEeCCCCCccccccccCCCCCCCCCCEEEEEeCC-C--cEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCC-
Q psy226          280 VAWAPGVASESISEAAGRPPGQGGGPYLATGSRD-K--TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDD-  355 (406)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~--~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d-  355 (406)
                      ..|+|                  +|.+++..+.+ +  .|.+||+.++... .+. +........|+|+|++|+..+.+ 
T Consensus       336 ~~~Sp------------------dg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~  395 (430)
T PRK00178        336 PRLSA------------------DGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQ  395 (430)
T ss_pred             eEECC------------------CCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecC
Confidence            45555                  45566655543 3  5888999887643 222 12222356899999998766543 


Q ss_pred             --CeEEEEeCCCCccceeeccccceEEEEEEeCC
Q psy226          356 --KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA  387 (406)
Q Consensus       356 --~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~  387 (406)
                        ..|.+++... .....+..+.+.+...+|+|.
T Consensus       396 g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        396 GRGVLMLVSING-RVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             CceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence              3577777753 333455545556777778764

>KOG0280|consensus

Probab=99.53  E-value=7.9e-12  Score=105.84  Aligned_cols=260  Identities=18%  Similarity=0.260  Sum_probs=176.3

Q ss_pred             CCCcEEEEEcCCCcEEE---EecccccCeeeEEECC---CCC-EEEEEeCCCcEEEEeCCCCeEEEEEecCC------cc
Q psy226          126 EDATIRLWDYETGEYER---ALHGHLDSVQDIAFDQ---SGK-LLVSCSADMSLKLWDMSTYQCLKTMQGHD------HN  192 (406)
Q Consensus       126 ~dg~v~vwd~~~~~~~~---~~~~h~~~V~~l~~~~---~g~-~l~sgs~d~~i~vwd~~~~~~~~~~~~h~------~~  192 (406)
                      ..|.+.+|++.+.+...   ...-.+..+..+.|..   +|. .|+-+..+|.|.++..........+++-.      ..
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            45778889887765432   1222345667777753   444 56677788999999765433333333221      12


Q ss_pred             eEEEEEecCCCEEEEEeCCCcEEEEEcCCCeE--EEEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEeCCCccc-e-
Q psy226          193 VTGVAFLPNSDFVLSASRDKTIKMWEVATGYC--VKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKET-K-  267 (406)
Q Consensus       193 v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~~~-~-  267 (406)
                      ..++.|++.+..++++-.+|.+.+-+......  ++..++|.-.+....|+. +.+++.+|+.|+.+..||++.+.. + 
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            45778899899999999999998666555443  347889998888888876 447899999999999999984332 2 


Q ss_pred             eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCcCEEEEEEcCCC
Q psy226          268 AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS-GSLLFTLIGHDNWVRGVTFHPGG  346 (406)
Q Consensus       268 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~-~~~~~~~~~h~~~v~~l~~s~~g  346 (406)
                      ...+.|...|.++.-+|.                 .+.++++|+.|..|++||.++ +++++.-. -.+.|..+.++|.-
T Consensus       204 ~n~kvH~~GV~SI~ss~~-----------------~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPP-----------------KPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEI  265 (339)
T ss_pred             ecceeeecceEEEecCCC-----------------CCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchh
Confidence            123467788888876663                 467999999999999999984 66654432 24679999999853


Q ss_pred             --CEEEEEeCCCeEEEEeCCCCc-----cceeeccccceEEEEEEeCCCCEEEEee-CCCeEE-Eee
Q psy226          347 --KYLVSCGDDKTLRVWDTANKR-----NMKTLEAHSHFVTSLDFHRAHPYVVTGS-VDKTVK-VWE  404 (406)
Q Consensus       347 --~~l~sgs~d~~i~vwd~~~~~-----~~~~l~~h~~~v~~l~~~~~~~~l~sgs-~Dg~v~-iw~  404 (406)
                        +.|+++=.+| .+|-+.+.+.     .....+.|.+-+..-+|.....+||||+ .|+.++ +|-
T Consensus       266 ~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  266 FHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             hhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence              3344443333 4566654432     2334466877788888877777899976 566644 773

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.6e-11  Score=117.60  Aligned_cols=234  Identities=18%  Similarity=0.163  Sum_probs=146.5

Q ss_pred             cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC-C--cEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEE
Q psy226          129 TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD-M--SLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFV  205 (406)
Q Consensus       129 ~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d-~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  205 (406)
                      .+.++|...... +.+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++... +..........+|+|+|+.|
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            566777655443 4455567788999999999988876543 2  58888998776432 22222334578999999977


Q ss_pred             EE-EeCCCc--EEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC-CC--eEEEEeCCCccceeEEecCCceEEE
Q psy226          206 LS-ASRDKT--IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN-DH--TARVWSLATKETKAELRGHDHTVEC  279 (406)
Q Consensus       206 ~s-~s~d~~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~v~~  279 (406)
                      +. .+.++.  |.++|+.++.. ..+..+.......+|+|||+.++..+. ++  .|.++|+.+++... +.........
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~  354 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLG  354 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcC
Confidence            64 566665  77778887754 444455555677899999998876553 33  46666776554322 2211111223


Q ss_pred             EEeCCCCCccccccccCCCCCCCCCCEEEEEeC-CC--cEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeC-C
Q psy226          280 VAWAPGVASESISEAAGRPPGQGGGPYLATGSR-DK--TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD-D  355 (406)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~-d  355 (406)
                      ..|+|                  +|.+++..+. ++  .|.++|+.++.... +... .......|+|+|++|+..+. +
T Consensus       355 ~~~Sp------------------DG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~  414 (448)
T PRK04792        355 GSITP------------------DGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQ  414 (448)
T ss_pred             eeECC------------------CCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecC
Confidence            45665                  3556655544 34  45667887776432 2221 12234579999998876543 3


Q ss_pred             C--eEEEEeCCCCccceeeccccceEEEEEEeCC
Q psy226          356 K--TLRVWDTANKRNMKTLEAHSHFVTSLDFHRA  387 (406)
Q Consensus       356 ~--~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~  387 (406)
                      +  .+++++. ++.....+..+.+.+...+|+|-
T Consensus       415 g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        415 GKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             CceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence            3  3777786 45566666666666778888873

>KOG1409|consensus

Probab=99.49  E-value=1.7e-12  Score=112.00  Aligned_cols=245  Identities=17%  Similarity=0.263  Sum_probs=181.4

Q ss_pred             EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEe-CCCCeEEEEEe-cCCcceEEEEEecCCCEEEEEeCCCcEEEE
Q psy226          140 YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD-MSTYQCLKTMQ-GHDHNVTGVAFLPNSDFVLSASRDKTIKMW  217 (406)
Q Consensus       140 ~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd-~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~i~iw  217 (406)
                      +...++||.+.|++...-|...-+++.+.|.++|||- ...++.-..+. ....+++++.+++....|+.|-..|++.-+
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            4566789999999988888888899999999999994 33444332222 234678999999999999999999999887


Q ss_pred             EcCC----CeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCcccccc
Q psy226          218 EVAT----GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISE  293 (406)
Q Consensus       218 d~~~----~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  293 (406)
                      -+..    ....+....|..++..+.|+-..+++++++.|..+.--..+.+..+....     ..+.+-.+    .    
T Consensus        96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-----~~~~~t~~----~----  162 (404)
T KOG1409|consen   96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-----FETPASAL----Q----  162 (404)
T ss_pred             EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-----eeccCCCC----c----
Confidence            6543    33455667899999999999999999999999887554444443322110     00000000    0    


Q ss_pred             ccCCCCCCCCCCEEEEEeCCCcEEEEEC--CCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-cce
Q psy226          294 AAGRPPGQGGGPYLATGSRDKTIKLWDV--GSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR-NMK  370 (406)
Q Consensus       294 ~~~~~~~~~~~~~l~s~~~d~~i~lwd~--~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~-~~~  370 (406)
                            .  +-.+...|...|.|.+-.+  ..-.++.++.+|.+.+.+++|.|..+.|++|..|..+.+||+...+ ...
T Consensus       163 ------~--d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~  234 (404)
T KOG1409|consen  163 ------F--DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAY  234 (404)
T ss_pred             ------e--eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceee
Confidence                  0  0013444555555544332  3456788999999999999999999999999999999999997544 345


Q ss_pred             eeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          371 TLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       371 ~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ++.+|.+.|..+...+..+.|.+++.||.|.+|+-
T Consensus       235 el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~m  269 (404)
T KOG1409|consen  235 ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNM  269 (404)
T ss_pred             eeccchhhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence            67889999999999999999999999999999984

>KOG1064|consensus

Probab=99.48  E-value=3.3e-13  Score=137.61  Aligned_cols=198  Identities=19%  Similarity=0.353  Sum_probs=160.8

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      ++.|-..|.++.-||...+.+||+.||.|++|....++.+...+ +....|+.+.|+.+|+.+..+..||.+.+|... .
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            34456778889999999999999999999999999887666554 234789999999999999999999999999987 4


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEe---CCCcEEEEEcCC---CeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSAS---RDKTIKMWEVAT---GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s---~d~~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      +.....+.|+.......|..  ..+++++   .++.+.+||.--   ..++.  ..|...++++++.|..++|++||.+|
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcC
Confidence            55667788998888888875  5566653   468999999632   22344  78999999999999999999999999


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~  332 (406)
                      -|++||++..+.++.++.         +.                   ...++++|+..|.++||++.....++++..
T Consensus      2359 ~v~l~D~rqrql~h~~~~---------~~-------------------~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA---------LD-------------------TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             cEEEeehHHHHHHHHhhh---------hh-------------------hhheeeccCcccceEEEEccccchhhcCch
Confidence            999999987776655443         11                   135799999999999999988877776653

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.48  E-value=2.4e-11  Score=116.12  Aligned_cols=162  Identities=22%  Similarity=0.238  Sum_probs=118.2

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEE-EEeCCC--cEEE
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSED---ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV-SCSADM--SLKL  174 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~d---g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~-sgs~d~--~i~v  174 (406)
                      .+..+..++...+|+|+++.||.++.+   ..|++||+.+++... +..+...+.+++|+|+|+.|+ +.+.++  .|.+
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~  262 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV  262 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence            345567789999999999999987654   479999999886543 334556677899999998776 444444  5888


Q ss_pred             EeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeC-CC--cEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe
Q psy226          175 WDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR-DK--TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       175 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                      ||+.+++. ..+..+........|+|+++.|+..+. ++  .|.++|+.++.. ..+..+...+....|+|+|++++.++
T Consensus       263 ~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~  340 (417)
T TIGR02800       263 MDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVH  340 (417)
T ss_pred             EECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEE
Confidence            89887654 344445445557789999998876654 33  577788877654 34444556677889999999999888


Q ss_pred             CCC---eEEEEeCCCcc
Q psy226          252 NDH---TARVWSLATKE  265 (406)
Q Consensus       252 ~d~---~v~vwd~~~~~  265 (406)
                      .++   .|.+||+.++.
T Consensus       341 ~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       341 REGGGFNIAVMDLDGGG  357 (417)
T ss_pred             ccCCceEEEEEeCCCCC
Confidence            776   78889987643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.47  E-value=7.1e-10  Score=100.73  Aligned_cols=258  Identities=13%  Similarity=0.145  Sum_probs=162.5

Q ss_pred             CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEEecCCc------
Q psy226          128 ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSA----------DMSLKLWDMSTYQCLKTMQGHDH------  191 (406)
Q Consensus       128 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~----------d~~i~vwd~~~~~~~~~~~~h~~------  191 (406)
                      ++|.|.|..+++.+..+.....+- .+ ++|||+.|+++..          +..|.+||..+++.+..+..-..      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            899999999999888876433332 24 9999998887766          68999999999998887764222      


Q ss_pred             -ceEEEEEecCCCEEEEEe-C-CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCcccee
Q psy226          192 -NVTGVAFLPNSDFVLSAS-R-DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKA  268 (406)
Q Consensus       192 -~v~~~~~~p~~~~l~s~s-~-d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  268 (406)
                       .-..++++|+|++|+... . +..|.+.|+.+++.+..+.-.. ...-...+ +...+ .-+.||......+.......
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~-~~~~Dg~~~~v~~d~~g~~~  181 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTA-NDTFF-MHCRDGSLAKVGYGTKGNPK  181 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEec-CCccE-EEeecCceEEEEecCCCceE
Confidence             223688999999988765 3 7899999999998887765421 11111122 22222 22344444443332221111


Q ss_pred             EEecCCceEEEEE-eCCCCCccccccccCCC-CCCCCCCEEEEEeCCCcEEEEECCCC-----eEEEEEeC-------CC
Q psy226          269 ELRGHDHTVECVA-WAPGVASESISEAAGRP-PGQGGGPYLATGSRDKTIKLWDVGSG-----SLLFTLIG-------HD  334 (406)
Q Consensus       269 ~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~s~~~d~~i~lwd~~~~-----~~~~~~~~-------h~  334 (406)
                              +.... |.++. .    ....+| ....+|.++..... |.|.+.|+...     .....+..       ..
T Consensus       182 --------~~~~~vf~~~~-~----~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP  247 (352)
T TIGR02658       182 --------IKPTEVFHPED-E----YLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP  247 (352)
T ss_pred             --------EeeeeeecCCc-c----ccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence                    11111 11100 0    000011 01124566666665 99999996433     22222211       22


Q ss_pred             cCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCccceeeccccceEEEEEEeCCCC-EEEEee-CCCeEEE
Q psy226          335 NWVRGVTFHPGGKYLVSCG----------DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP-YVVTGS-VDKTVKV  402 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs----------~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~-~l~sgs-~Dg~v~i  402 (406)
                      ....-++++|+|+.++...          ..+.|.++|..+++.+..+.. ...+..++++||++ +|.+.. .++.|.+
T Consensus       248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsV  326 (352)
T TIGR02658       248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYI  326 (352)
T ss_pred             CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence            3344599999999888743          225799999999999988864 34789999999999 776544 6788999


Q ss_pred             eec
Q psy226          403 WEC  405 (406)
Q Consensus       403 w~~  405 (406)
                      .|.
T Consensus       327 iD~  329 (352)
T TIGR02658       327 FDA  329 (352)
T ss_pred             EEC
Confidence            885

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.47  E-value=1.8e-09  Score=100.11  Aligned_cols=259  Identities=16%  Similarity=0.247  Sum_probs=161.2

Q ss_pred             CeEEEEEcCCCCEEEEEeC----CCcEEEEEcCC--CcEEE--EecccccCeeeEEECCCCCEEEEEeC-CCcEEEEeCC
Q psy226          108 PVIKVIFHPVFSLMASCSE----DATIRLWDYET--GEYER--ALHGHLDSVQDIAFDQSGKLLVSCSA-DMSLKLWDMS  178 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~----dg~v~vwd~~~--~~~~~--~~~~h~~~V~~l~~~~~g~~l~sgs~-d~~i~vwd~~  178 (406)
                      ...-++++|++++|.+...    +|.|..|++..  +++..  ...........++++|++++|+++.. +|+|.++++.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            3456889999999998877    57899998776  44332  22222334557999999999998874 8999999997


Q ss_pred             C-CeEEEE--Eec-----------CCcceEEEEEecCCCEEEEEeC-CCcEEEEEcCCCe--EE--EEee-cCCccEEEE
Q psy226          179 T-YQCLKT--MQG-----------HDHNVTGVAFLPNSDFVLSASR-DKTIKMWEVATGY--CV--KTLT-GHREWVRQI  238 (406)
Q Consensus       179 ~-~~~~~~--~~~-----------h~~~v~~~~~~p~~~~l~s~s~-d~~i~iwd~~~~~--~~--~~~~-~~~~~v~~l  238 (406)
                      . +.....  ...           ......++.|+|+++++++... ...|.+|++....  ..  ..+. ......+.+
T Consensus       118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~  197 (345)
T PF10282_consen  118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL  197 (345)
T ss_dssp             TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred             CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence            6 433222  111           1234678999999998887643 3479999987654  21  2222 233456789


Q ss_pred             EECCCCCEEEE-EeCCCeEEEEeCCCccc----eeEEecC------CceEEEEEeCCCCCccccccccCCCCCCCCCCEE
Q psy226          239 KVSPDGTLLAS-CSNDHTARVWSLATKET----KAELRGH------DHTVECVAWAPGVASESISEAAGRPPGQGGGPYL  307 (406)
Q Consensus       239 ~~~~~~~~l~s-~~~d~~v~vwd~~~~~~----~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  307 (406)
                      +|+|+++++.. +-.++.|.++++.....    .......      ......+.++|                  +|++|
T Consensus       198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp------------------dg~~l  259 (345)
T PF10282_consen  198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP------------------DGRFL  259 (345)
T ss_dssp             EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T------------------TSSEE
T ss_pred             EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec------------------CCCEE
Confidence            99999988755 45688999999872211    1111110      01234444444                  46777


Q ss_pred             EEEe-CCCcEEEEECC--CCeE--EEEEeCCCcCEEEEEEcCCCCEEEEEe-CCCeEEEEeC--CCCccceeec-cccce
Q psy226          308 ATGS-RDKTIKLWDVG--SGSL--LFTLIGHDNWVRGVTFHPGGKYLVSCG-DDKTLRVWDT--ANKRNMKTLE-AHSHF  378 (406)
Q Consensus       308 ~s~~-~d~~i~lwd~~--~~~~--~~~~~~h~~~v~~l~~s~~g~~l~sgs-~d~~i~vwd~--~~~~~~~~l~-~h~~~  378 (406)
                      +++. ..+.|.+|++.  ++.+  +..+.......+.++++|+|++|+++. .++.|.+|++  .++.....-. ..-..
T Consensus       260 yvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~  339 (345)
T PF10282_consen  260 YVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPS  339 (345)
T ss_dssp             EEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred             EEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCC
Confidence            6655 46789999983  3433  333443455689999999999998776 5679999976  4554332221 12223


Q ss_pred             EEEEEE
Q psy226          379 VTSLDF  384 (406)
Q Consensus       379 v~~l~~  384 (406)
                      ..||.|
T Consensus       340 p~ci~f  345 (345)
T PF10282_consen  340 PVCIVF  345 (345)
T ss_dssp             EEEEEE
T ss_pred             CEEEeC
Confidence            456655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547|consensus

Probab=99.47  E-value=5.9e-12  Score=116.08  Aligned_cols=185  Identities=19%  Similarity=0.315  Sum_probs=148.0

Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC---C------ccEEEEEECC--------------CCCEEEEEeCCCeE
Q psy226          200 PNSDFVLSASRDKTIKMWEVATGYCVKTLTGH---R------EWVRQIKVSP--------------DGTLLASCSNDHTA  256 (406)
Q Consensus       200 p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---~------~~v~~l~~~~--------------~~~~l~s~~~d~~v  256 (406)
                      |...+++....||.+++||...++..+.+..-   +      .|...+..+|              +-.+++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            45678999999999999999888766555431   1      1222222222              23467888899999


Q ss_pred             EEEeCCCccceeEEe--cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy226          257 RVWSLATKETKAELR--GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD  334 (406)
Q Consensus       257 ~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~  334 (406)
                      -+|++..++....+.  .|...|.++.++..                  -..+.+++.|..+..|+...++.++...+..
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~------------------~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~  144 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQR------------------LGCIYSVGADLKVVYILEKEKVIIRIWKEQK  144 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccc------------------cCceEecCCceeEEEEecccceeeeeeccCC
Confidence            999999888776665  68888988887653                  3468999999999999999999999999988


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCC-----CCEE-EEeeCCCeEEEee
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA-----HPYV-VTGSVDKTVKVWE  404 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~-----~~~l-~sgs~Dg~v~iw~  404 (406)
                      ..+.+++.+|||..++++|  +.|++||+++++.+.++.+|.++|++++|...     |.++ .+...+..+.+|-
T Consensus       145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  145 PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             CccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            8999999999999999987  68999999999999999999999999999887     5555 4455666677774

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=4.7e-11  Score=114.44  Aligned_cols=221  Identities=19%  Similarity=0.192  Sum_probs=141.6

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEE-EEeCCC--cEEE
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSED---ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV-SCSADM--SLKL  174 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~d---g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~-sgs~d~--~i~v  174 (406)
                      .+..+..++....|+|+++.|+..+.+   ..|.+||+.+++... +....+.+....|+|+|+.|+ +.+.++  .|.+
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~  271 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV  271 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence            355677789999999999998876644   368999999887543 333334566789999999887 444455  5888


Q ss_pred             EeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeC-CC--cEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe
Q psy226          175 WDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR-DK--TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       175 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                      ||+.+++.. .+..+........|+|+|+.++..+. ++  .|.++|+.++..... ...........|+|+|+.++..+
T Consensus       272 ~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~~~  349 (430)
T PRK00178        272 MDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVMVH  349 (430)
T ss_pred             EECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEE
Confidence            899887643 44455555667899999998776554 33  577778877764332 22222334578999999998776


Q ss_pred             CC-C--eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC-C--cEEEEECCCCe
Q psy226          252 ND-H--TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD-K--TIKLWDVGSGS  325 (406)
Q Consensus       252 ~d-~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~--~i~lwd~~~~~  325 (406)
                      .+ +  .|.++|+.++.... +. .........|+|                  +|..++..+.+ +  .|.++++. +.
T Consensus       350 ~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~sp------------------dg~~i~~~~~~~g~~~l~~~~~~-g~  408 (430)
T PRK00178        350 RQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAP------------------NGTMLIYATRQQGRGVLMLVSIN-GR  408 (430)
T ss_pred             ccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECC------------------CCCEEEEEEecCCceEEEEEECC-CC
Confidence            53 3  47788987764322 21 111122335555                  45566555543 3  46666764 44


Q ss_pred             EEEEEeCCCcCEEEEEEcCC
Q psy226          326 LLFTLIGHDNWVRGVTFHPG  345 (406)
Q Consensus       326 ~~~~~~~h~~~v~~l~~s~~  345 (406)
                      ....+..+.+.+...+|+|-
T Consensus       409 ~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        409 VRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             ceEECcCCCCCcCCCccCCC
Confidence            44445445556677777763

>KOG0974|consensus

Probab=99.46  E-value=2e-12  Score=126.16  Aligned_cols=190  Identities=18%  Similarity=0.265  Sum_probs=148.5

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEeccccc----CeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q psy226          112 VIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLD----SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       112 v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~----~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      ..+.-+...++.+..+..+.+||...+.....+.+...    ...-+-++++.-++++|+.-+.|.+|+...-+....+.
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~  172 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK  172 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence            44555667888999999999999988776655543221    12223456666789999999999999987333223588


Q ss_pred             cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEE-EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc
Q psy226          188 GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVK-TLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET  266 (406)
Q Consensus       188 ~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~  266 (406)
                      ||++.|.++.|+-+|.++++.|.|+++|+|++.+.+... ..-+|+..|..+.|.|+  .+++++.|-+.++|+.... .
T Consensus       173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~-~  249 (967)
T KOG0974|consen  173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT-Q  249 (967)
T ss_pred             ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccc-e
Confidence            999999999999999999999999999999999887665 66689999999999998  8999999999999976543 3


Q ss_pred             eeEEecCC-ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC
Q psy226          267 KAELRGHD-HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG  322 (406)
Q Consensus       267 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~  322 (406)
                      ...+.+|. ..+..++..+                  +....++++.|+.+++||+.
T Consensus       250 l~~y~~h~g~~iw~~~~~~------------------~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  250 LEVYDEHSGKGIWKIAVPI------------------GVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             ehhhhhhhhcceeEEEEcC------------------CceEEEeeccCcchhhhhhh
Confidence            33555554 3466666655                  34579999999999999864

>KOG4547|consensus

Probab=99.44  E-value=7.1e-11  Score=109.08  Aligned_cols=188  Identities=20%  Similarity=0.303  Sum_probs=150.3

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC---CcceEEEEEe------c--------------CCCEEEEEeCCCcE
Q psy226          158 QSGKLLVSCSADMSLKLWDMSTYQCLKTMQGH---DHNVTGVAFL------P--------------NSDFVLSASRDKTI  214 (406)
Q Consensus       158 ~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h---~~~v~~~~~~------p--------------~~~~l~s~s~d~~i  214 (406)
                      |...++|....||.+++||..+++....+...   ++...+..|.      |              +...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            45678999999999999999887765544321   2223333332      2              22467788999999


Q ss_pred             EEEEcCCCeEEEEee--cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccc
Q psy226          215 KMWEVATGYCVKTLT--GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESIS  292 (406)
Q Consensus       215 ~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  292 (406)
                      .+|++..|+....+.  .|.+.|.++.++.+-..|.+++.|+.+..|+................+.++..+|        
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~--------  154 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP--------  154 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC--------
Confidence            999999998877775  6888999999999999999999999999999998888888887778888888887        


Q ss_pred             cccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCC-----CCEEEEE-eCCCeEEEEeCCC
Q psy226          293 EAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPG-----GKYLVSC-GDDKTLRVWDTAN  365 (406)
Q Consensus       293 ~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~-----g~~l~sg-s~d~~i~vwd~~~  365 (406)
                                ++..+++|+  ++|++||+.+++.+.+|.||.++|+++.|..+     |.+++++ ..+.-|.+|-+..
T Consensus       155 ----------D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 ----------DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             ----------CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence                      367788876  67999999999999999999999999999887     7777654 4456677886543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.44  E-value=1.4e-09  Score=113.64  Aligned_cols=254  Identities=17%  Similarity=0.222  Sum_probs=158.0

Q ss_pred             EEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcEEEEecc--------------cccCeeeEEECCCCCEEEEEeC-CCcEE
Q psy226          110 IKVIFHPV-FSLMASCSEDATIRLWDYETGEYERALHG--------------HLDSVQDIAFDQSGKLLVSCSA-DMSLK  173 (406)
Q Consensus       110 ~~v~~~p~-~~~latgs~dg~v~vwd~~~~~~~~~~~~--------------h~~~V~~l~~~~~g~~l~sgs~-d~~i~  173 (406)
                      ..+++++. +.++++-+..+.|++||... .....+.+              +-.....|+++++++.|+++.. .+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            45788875 66788888899999999764 44433322              1123578999998887666544 56799


Q ss_pred             EEeCCCCeEEEEEecC-----------------CcceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCeEEEEeecC----
Q psy226          174 LWDMSTYQCLKTMQGH-----------------DHNVTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTLTGH----  231 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h-----------------~~~v~~~~~~p-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~----  231 (406)
                      ++|..++. +.++.+-                 -..-..++|+| ++..+++.+.++.|++||..++... .+.+.    
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            99987754 3343221                 01235799999 4556677778899999999877543 22111    


Q ss_pred             -----------CccEEEEEECCCCC-EEEEEeCCCeEEEEeCCCccceeEEecCCc-eEEEEEeCCCCCccccccccCCC
Q psy226          232 -----------REWVRQIKVSPDGT-LLASCSNDHTARVWSLATKETKAELRGHDH-TVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       232 -----------~~~v~~l~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                                 -.....++++|+|. ++++-+.++.|++||+.++.......+... +.....+.... ..........|
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d-G~g~~~~l~~P  806 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD-GVGSEVLLQHP  806 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC-CchhhhhccCC
Confidence                       12345799999998 555666789999999876543211110000 00000000000 00000000011


Q ss_pred             C---CCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC--------------CCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy226          299 P---GQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG--------------HDNWVRGVTFHPGGKYLVSCGDDKTLRVW  361 (406)
Q Consensus       299 ~---~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~--------------h~~~v~~l~~s~~g~~l~sgs~d~~i~vw  361 (406)
                      .   ...+|.++++-+.++.|++||..++.... +.+              .-.....++++++|+.+++-+.+++|++|
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence            1   12346678888889999999998776542 222              12357789999999998998999999999


Q ss_pred             eCCCCcc
Q psy226          362 DTANKRN  368 (406)
Q Consensus       362 d~~~~~~  368 (406)
                      |+.+++.
T Consensus       886 d~~~~~~  892 (1057)
T PLN02919        886 DLNKGEA  892 (1057)
T ss_pred             ECCCCcc
Confidence            9987654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.43  E-value=5.5e-10  Score=105.22  Aligned_cols=273  Identities=14%  Similarity=0.051  Sum_probs=167.6

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVA  197 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  197 (406)
                      +..+++++.+|.|.-+|..+|+......-..........  ++..++.++.|+.+..+|..+++.+....... .+.+.-
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p  141 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP  141 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence            568888999999999999999877655433222222332  46778888999999999999998776554322 222111


Q ss_pred             EecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEE-----EEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEec
Q psy226          198 FLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVR-----QIKVSPDGTLLASCSNDHTARVWSLATKETKAELRG  272 (406)
Q Consensus       198 ~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~-----~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~  272 (406)
                      .. .++.++.++.++.+..||..+|+.+..+........     +...  .+..++.+..++.+..+|..+++.+-....
T Consensus       142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~  218 (377)
T TIGR03300       142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRV  218 (377)
T ss_pred             EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence            11 345777788899999999999988776654322111     1111  124677778888898888877654322110


Q ss_pred             ------------------------------CCceEEEEEeCCCCCccccccc--cCCCCCCCCCCEEEEEeCCCcEEEEE
Q psy226          273 ------------------------------HDHTVECVAWAPGVASESISEA--AGRPPGQGGGPYLATGSRDKTIKLWD  320 (406)
Q Consensus       273 ------------------------------~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~d~~i~lwd  320 (406)
                                                    +...+.++....+   ..+...  .........+..++.++.||.|..+|
T Consensus       219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d  295 (377)
T TIGR03300       219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG---RVLWKRDASSYQGPAVDDNRLYVTDADGVVVALD  295 (377)
T ss_pred             ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC---cEEEeeccCCccCceEeCCEEEEECCCCeEEEEE
Confidence                                          0111111111100   000000  00001112355677888899999999


Q ss_pred             CCCCeEEEEEeCCCc-CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceE-EEEEEeCCCCEEEEeeCCC
Q psy226          321 VGSGSLLFTLIGHDN-WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFV-TSLDFHRAHPYVVTGSVDK  398 (406)
Q Consensus       321 ~~~~~~~~~~~~h~~-~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v-~~l~~~~~~~~l~sgs~Dg  398 (406)
                      ..+|+.+........ ...+...  .+..|++++.+|.|+++|..+++.+.++..+...+ .+..+. ++ .|..++.||
T Consensus       296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG  371 (377)
T TIGR03300       296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDG  371 (377)
T ss_pred             CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCc
Confidence            999987765432111 1122122  36788999999999999999999888887665433 233333 33 477788999


Q ss_pred             eEEEe
Q psy226          399 TVKVW  403 (406)
Q Consensus       399 ~v~iw  403 (406)
                      .|..|
T Consensus       372 ~l~~~  376 (377)
T TIGR03300       372 DLYAF  376 (377)
T ss_pred             eEEEe
Confidence            98776

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2041|consensus

Probab=99.43  E-value=1.8e-11  Score=115.06  Aligned_cols=282  Identities=13%  Similarity=0.186  Sum_probs=192.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC---------------cEEEEecccccCeeeEEECCCCCEEEEEeCCC
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETG---------------EYERALHGHLDSVQDIAFDQSGKLLVSCSADM  170 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~---------------~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~  170 (406)
                      +....|+.|+....++|+|+.||.++|..+.+.               ...+++.||...|.-+.|+.+...|-|...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            345789999999999999999999999976542               12456889999999999999999999999999


Q ss_pred             cEEEEeCCCCeEEEEEe--cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEE-EEeecCCccEEEEEECCCCCEE
Q psy226          171 SLKLWDMSTYQCLKTMQ--GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV-KTLTGHREWVRQIKVSPDGTLL  247 (406)
Q Consensus       171 ~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l  247 (406)
                      .|.+|-+-.++....+.  ...+-|.+++|+.+|..+...-.||.|.+=.+...+.- +.+++  .....+.|++|.+.+
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQA  171 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHH
Confidence            99999886654322221  23456889999999998887777887765444322110 11111  112357799999988


Q ss_pred             EEEeCCCeEEEEeCCCccc--------e---eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcE
Q psy226          248 ASCSNDHTARVWSLATKET--------K---AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTI  316 (406)
Q Consensus       248 ~s~~~d~~v~vwd~~~~~~--------~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  316 (406)
                      +.+-..|.+.++|....-.        +   ..+......+..+.|..+..          ....++.+.|+.+...|.+
T Consensus       172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~----------~~v~pdrP~lavcy~nGr~  241 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY----------QPVPPDRPRLAVCYANGRM  241 (1189)
T ss_pred             HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc----------ccCCCCCCEEEEEEcCcee
Confidence            8888899999999753211        0   01111222344444443211          0112356789999999988


Q ss_pred             EEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCccceeeccccceEEEEEEeCC
Q psy226          317 KLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDD---------KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA  387 (406)
Q Consensus       317 ~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d---------~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~  387 (406)
                      .|..-.+......+. ..-.+....|+++|.+|+.+|.|         +.|.++. .-|+.+.+++.....|++++|-..
T Consensus       242 QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~  319 (1189)
T KOG2041|consen  242 QIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGT  319 (1189)
T ss_pred             hhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCC
Confidence            876544332222222 22458889999999999998864         2455553 457888899888889999999888


Q ss_pred             CCEEEEeeCCCeEEE
Q psy226          388 HPYVVTGSVDKTVKV  402 (406)
Q Consensus       388 ~~~l~sgs~Dg~v~i  402 (406)
                      |-.+|-+ .|+.|.+
T Consensus       320 gLriA~A-vdsfiyf  333 (1189)
T KOG2041|consen  320 GLRIAIA-VDSFIYF  333 (1189)
T ss_pred             ceEEEEE-ecceEEE
Confidence            8666654 4665554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=7.9e-11  Score=112.79  Aligned_cols=219  Identities=19%  Similarity=0.176  Sum_probs=137.4

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEE-EeCCCc--EEEE
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSE-DA--TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVS-CSADMS--LKLW  175 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~-dg--~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~s-gs~d~~--i~vw  175 (406)
                      +..+..++....|+|+|+.|+..+. ++  .|.+||+.+++... +....+.....+|+|||+.|+. .+.++.  |.++
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            3445667889999999998887654 33  58888998887533 2222334457899999997764 556665  7777


Q ss_pred             eCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeC-CC--cEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC
Q psy226          176 DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR-DK--TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN  252 (406)
Q Consensus       176 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~  252 (406)
                      |+.+++. ..+..+.......+|+|+++.|+..+. ++  .|.++|+.++.... +..........+|+|||++++..+.
T Consensus       292 dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        292 DIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             ECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEe
Confidence            8887664 344445556678899999998766553 34  46667777776433 2222223345689999998877655


Q ss_pred             -CC--eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC-CC--cEEEEECCCCeE
Q psy226          253 -DH--TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR-DK--TIKLWDVGSGSL  326 (406)
Q Consensus       253 -d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~lwd~~~~~~  326 (406)
                       ++  .|.++|+.++... .+... .......|+|                  +|..++..+. ++  .+.+++. +|..
T Consensus       370 ~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~sp------------------dG~~I~~~~~~~g~~~l~~~~~-~G~~  428 (448)
T PRK04792        370 TNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAP------------------NGTMVIYSTTYQGKQVLAAVSI-DGRF  428 (448)
T ss_pred             cCCceEEEEEECCCCCeE-EccCC-CCCCCceECC------------------CCCEEEEEEecCCceEEEEEEC-CCCc
Confidence             34  3455677665432 22211 1111224554                  4555555443 33  3677776 5666


Q ss_pred             EEEEeCCCcCEEEEEEcC
Q psy226          327 LFTLIGHDNWVRGVTFHP  344 (406)
Q Consensus       327 ~~~~~~h~~~v~~l~~s~  344 (406)
                      ...+..+.+.+...+|+|
T Consensus       429 ~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        429 KARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             eEECcCCCCCcCCCccCC
Confidence            666666666677788887

>KOG2321|consensus

Probab=99.43  E-value=5.8e-11  Score=109.14  Aligned_cols=237  Identities=14%  Similarity=0.220  Sum_probs=169.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      .+|.-..++.|..-++-=-.|.+|-+.......+...+.   ..-.+++++.-..-|+.++....|.-++++.|..+..+
T Consensus        95 e~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~  171 (703)
T KOG2321|consen   95 EVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPF  171 (703)
T ss_pred             cceeEEEeccchhhheEeecCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecCcceEEEEcccccccccc
Confidence            456666666666655555566666654322211111111   12335566543433445555567888899999988888


Q ss_pred             ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee------cCCc-----cEEEEEECCCCCEEEEEeCCCe
Q psy226          187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT------GHRE-----WVRQIKVSPDGTLLASCSNDHT  255 (406)
Q Consensus       187 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~------~~~~-----~v~~l~~~~~~~~l~s~~~d~~  255 (406)
                      ......++++..++...+|++|+.||.|-.||.++...+.++.      .|..     .|+++.|+.+|-.++.|..+|.
T Consensus       172 ~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~  251 (703)
T KOG2321|consen  172 ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS  251 (703)
T ss_pred             ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence            8888899999999999999999999999999998766555443      2333     4899999999999999999999


Q ss_pred             EEEEeCCCccceeEE-ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy226          256 ARVWSLATKETKAEL-RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD  334 (406)
Q Consensus       256 v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~  334 (406)
                      +.|||+++.+++..- .+..-+|..+.|.+..                .++.++ ..+...++|||-.+|+....+....
T Consensus       252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~----------------~q~~v~-S~Dk~~~kiWd~~~Gk~~asiEpt~  314 (703)
T KOG2321|consen  252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDTD----------------QQNKVV-SMDKRILKIWDECTGKPMASIEPTS  314 (703)
T ss_pred             EEEEEcccCCceeecccCCccceeeecccccC----------------CCceEE-ecchHHhhhcccccCCceeeccccC
Confidence            999999988765432 2334678888887631                233344 3456789999999999876665433


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                       .+..+++-|++-+++++-+++.+..|-+.
T Consensus       315 -~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  315 -DLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             -CcCceeeecCCceEEEecCCCcceeEEcc
Confidence             48999999999999999999888777654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.9e-10  Score=109.29  Aligned_cols=239  Identities=17%  Similarity=0.145  Sum_probs=144.9

Q ss_pred             CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEE---EEEeCCC--cEEEEeCCCCeEEEEEecCCcceEEEEEecCC
Q psy226          128 ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL---VSCSADM--SLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS  202 (406)
Q Consensus       128 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l---~sgs~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~  202 (406)
                      ..|.+.|...+... .+......+.+-.|+|||+.+   ++...++  .|.+.++.+++... +..........+|+|||
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG  242 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK  242 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence            35667777655433 344445566778999999752   2444444  47777887765432 22234445568999999


Q ss_pred             CEEEEEeC-CC----cEEEEEcCCC---eEEEEeecCCccEEEEEECCCCCEEEEEe-CCCeEEEEe--CCC-ccceeEE
Q psy226          203 DFVLSASR-DK----TIKMWEVATG---YCVKTLTGHREWVRQIKVSPDGTLLASCS-NDHTARVWS--LAT-KETKAEL  270 (406)
Q Consensus       203 ~~l~s~s~-d~----~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd--~~~-~~~~~~~  270 (406)
                      +.|+..+. +|    .+..|++..+   .......++.......+|+|||+.|+..+ .+|...+|.  +.. +.....+
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l  322 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL  322 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence            98876543 22    3444776653   33333323333445689999999887665 466555554  432 1223334


Q ss_pred             ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC---CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCC
Q psy226          271 RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD---KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK  347 (406)
Q Consensus       271 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~  347 (406)
                      ..+...+....|+|                  +|..|+..+.+   ..|.+||+.+++.. .+......+....|+|||+
T Consensus       323 t~~~~~~~~p~wSP------------------DG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~  383 (428)
T PRK01029        323 TKKYRNSSCPAWSP------------------DGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSL  383 (428)
T ss_pred             ccCCCCccceeECC------------------CCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCC
Confidence            34444555677877                  46666655443   36999999888764 3333334567899999999


Q ss_pred             EEEEEeC---CCeEEEEeCCCCccceeeccccceEEEEEEeCCC
Q psy226          348 YLVSCGD---DKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAH  388 (406)
Q Consensus       348 ~l~sgs~---d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~  388 (406)
                      +|+..+.   ...|+++|+.+++... +....+.+...+|+|..
T Consensus       384 ~L~f~~~~~g~~~L~~vdl~~g~~~~-Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        384 HLVYSAGNSNESELYLISLITKKTRK-IVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEEEECCCCCceEEEEECCCCCEEE-eecCCCcccCceecCCC
Confidence            8874432   3578889988766433 33333446677888753

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.42  E-value=2.2e-10  Score=104.05  Aligned_cols=276  Identities=15%  Similarity=0.255  Sum_probs=182.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCC--------------
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADM--------------  170 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~--------------  170 (406)
                      -.-|+..+.+||-|.+|++.... .|.+|+.........+.  ...|..+.|+|.+++|.+-+...              
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            45688899999999999987654 48899988766444443  35788999999999999865433              


Q ss_pred             -cEEEEeCCCCeEEEEEecCC---------------------------------------------cceEEEEEecCCC-
Q psy226          171 -SLKLWDMSTYQCLKTMQGHD---------------------------------------------HNVTGVAFLPNSD-  203 (406)
Q Consensus       171 -~i~vwd~~~~~~~~~~~~h~---------------------------------------------~~v~~~~~~p~~~-  203 (406)
                       .+.+||..++..+..+.+..                                             ..|....|+|.++ 
T Consensus       108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~  187 (561)
T COG5354         108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNH  187 (561)
T ss_pred             CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCC
Confidence             49999998776554432221                                             1244445555432 


Q ss_pred             -EEEE-----EeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe-----------CCCeEEEEeCCCccc
Q psy226          204 -FVLS-----ASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS-----------NDHTARVWSLATKET  266 (406)
Q Consensus       204 -~l~s-----~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-----------~d~~v~vwd~~~~~~  266 (406)
                       .|+.     .+.++.+++|.+..+..+.+-.-....-..+.|.+.|++++.--           ....+.++++.....
T Consensus       188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i  267 (561)
T COG5354         188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI  267 (561)
T ss_pred             ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc
Confidence             2221     34566677777765544433222222234577888887765321           124577888764333


Q ss_pred             eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCC
Q psy226          267 KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGG  346 (406)
Q Consensus       267 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g  346 (406)
                      .... ...++|...+|.|..                .+--+++|..+..+.++|++.. ..+.+  ....=..+.|+|.+
T Consensus       268 ~V~~-~~~~pVhdf~W~p~S----------------~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~  327 (561)
T COG5354         268 PVEK-DLKDPVHDFTWEPLS----------------SRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHE  327 (561)
T ss_pred             ceec-cccccceeeeecccC----------------CceeEEecccccceeecccccc-eEEec--CCcccccccccCcc
Confidence            3332 567899999999852                1223556678889999999865 33333  33444567899999


Q ss_pred             CEEEEEeCC---CeEEEEeCCCCc-cceeeccccceEEEEEEeCCCCEEEEe------eCCCeEEEeec
Q psy226          347 KYLVSCGDD---KTLRVWDTANKR-NMKTLEAHSHFVTSLDFHRAHPYVVTG------SVDKTVKVWEC  405 (406)
Q Consensus       347 ~~l~sgs~d---~~i~vwd~~~~~-~~~~l~~h~~~v~~l~~~~~~~~l~sg------s~Dg~v~iw~~  405 (406)
                      ++++.++-|   |.|-+||..... ++..+.+-+  ..-+.|+|+++++.+.      -.|..|+|||+
T Consensus       328 r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v  394 (561)
T COG5354         328 RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV  394 (561)
T ss_pred             cEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence            999988765   679999987654 333555443  4556899999988765      35788999985

>KOG2314|consensus

Probab=99.42  E-value=6.9e-11  Score=108.26  Aligned_cols=271  Identities=17%  Similarity=0.261  Sum_probs=177.2

Q ss_pred             CeEEEEEcCCCCEEEEEeC-----------CCcEEEEEcCCCcEEEEeccccc--Ce-eeEEECCCCCEEEEEeCCCcEE
Q psy226          108 PVIKVIFHPVFSLMASCSE-----------DATIRLWDYETGEYERALHGHLD--SV-QDIAFDQSGKLLVSCSADMSLK  173 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~-----------dg~v~vwd~~~~~~~~~~~~h~~--~V-~~l~~~~~g~~l~sgs~d~~i~  173 (406)
                      .|.-+.|||..++|+|=|.           ...++|||+.+|...+.+....+  .+ .-..||.|++++|--.. .+|.
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis  329 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS  329 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence            4788999999999998653           25789999999998887765222  22 23679999999987766 4699


Q ss_pred             EEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeC-----CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEE
Q psy226          174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR-----DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLA  248 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  248 (406)
                      |++..+..++..-.-.-..|....|+|.++.|+-=..     -..+.+..+.+++.+++-.-+.-.=..+.|..+|.+|+
T Consensus       330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc  409 (698)
T KOG2314|consen  330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC  409 (698)
T ss_pred             EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence            9988765443222223356888899999888775322     23567777777777776655554444577778888876


Q ss_pred             EEe----------CCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC--CCcE
Q psy226          249 SCS----------NDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR--DKTI  316 (406)
Q Consensus       249 s~~----------~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--d~~i  316 (406)
                      .--          .-..+-|+.++.............+|...+|.|.                 +.++.+..+.  ..++
T Consensus       410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~-----------------gdkF~vi~g~~~k~tv  472 (698)
T KOG2314|consen  410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPH-----------------GDKFAVISGNTVKNTV  472 (698)
T ss_pred             EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccC-----------------CCeEEEEEccccccce
Confidence            432          1123455666554433333334456777788874                 2233333332  3468


Q ss_pred             EEEECCC----CeEEEEEeCCCcCEEEEEEcCCCCEEEEE---eCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCC
Q psy226          317 KLWDVGS----GSLLFTLIGHDNWVRGVTFHPGGKYLVSC---GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP  389 (406)
Q Consensus       317 ~lwd~~~----~~~~~~~~~h~~~v~~l~~s~~g~~l~sg---s~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~  389 (406)
                      .+|.+.+    .+++..+..  ...+.+.|+|.|++++.+   |..|.+.++|+.......+-.......+.+.|.|.|+
T Consensus       473 sfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGR  550 (698)
T KOG2314|consen  473 SFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGR  550 (698)
T ss_pred             eEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCC
Confidence            8887763    223334432  346789999999999875   4578999999875333222222223467899999999


Q ss_pred             EEEEeeCCC
Q psy226          390 YVVTGSVDK  398 (406)
Q Consensus       390 ~l~sgs~Dg  398 (406)
                      |+++++.-+
T Consensus       551 YvvT~ss~w  559 (698)
T KOG2314|consen  551 YVVTSSSSW  559 (698)
T ss_pred             EEEEeeehh
Confidence            999987544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=4.8e-10  Score=106.64  Aligned_cols=222  Identities=17%  Similarity=0.104  Sum_probs=137.5

Q ss_pred             cCCCCeEEEEEcCCCCE---EEEEeCCC--cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeC-----CCcEE
Q psy226          104 GHRSPVIKVIFHPVFSL---MASCSEDA--TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSA-----DMSLK  173 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~---latgs~dg--~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~-----d~~i~  173 (406)
                      ....++..=+|+|||+.   +++...+|  .|.+.++.+++..+. ....+.....+|+|||+.|+..+.     |..+.
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~  260 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ  260 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence            34455666789999974   23444444  477778888764433 223444567899999998886553     33345


Q ss_pred             EEeCCCC---eEEEEEecCCcceEEEEEecCCCEEEEEe-CCCcEEEEE--cCC-CeEEEEeecCCccEEEEEECCCCCE
Q psy226          174 LWDMSTY---QCLKTMQGHDHNVTGVAFLPNSDFVLSAS-RDKTIKMWE--VAT-GYCVKTLTGHREWVRQIKVSPDGTL  246 (406)
Q Consensus       174 vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~~i~iwd--~~~-~~~~~~~~~~~~~v~~l~~~~~~~~  246 (406)
                      +|++.++   +......++.......+|+|||+.|+..+ .++...+|.  +.. +.....+..+...+....|+|||+.
T Consensus       261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~  340 (428)
T PRK01029        261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKK  340 (428)
T ss_pred             EeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCE
Confidence            5776642   32233323333446789999999877655 466555554  432 2334445555556778899999999


Q ss_pred             EEEEeCC---CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEE-eC--CCcEEEEE
Q psy226          247 LASCSND---HTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATG-SR--DKTIKLWD  320 (406)
Q Consensus       247 l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~--d~~i~lwd  320 (406)
                      |+..+.+   ..|.+||+.+++... +......+....|+|+                  |..|+.. ..  ...|.++|
T Consensus       341 Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpD------------------G~~L~f~~~~~g~~~L~~vd  401 (428)
T PRK01029        341 IAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAID------------------SLHLVYSAGNSNESELYLIS  401 (428)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCC------------------CCEEEEEECCCCCceEEEEE
Confidence            8876643   468999998776543 3322334566778773                  5555543 32  34688899


Q ss_pred             CCCCeEEEEEeCCCcCEEEEEEcCCC
Q psy226          321 VGSGSLLFTLIGHDNWVRGVTFHPGG  346 (406)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~l~~s~~g  346 (406)
                      +..++..... .....+...+|+|-.
T Consensus       402 l~~g~~~~Lt-~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        402 LITKKTRKIV-IGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCCEEEee-cCCCcccCceecCCC
Confidence            9877654333 334456677888753

>KOG0280|consensus

Probab=99.36  E-value=1.1e-10  Score=99.01  Aligned_cols=239  Identities=17%  Similarity=0.209  Sum_probs=156.8

Q ss_pred             CeEEEEEcC---CCC-EEEEEeCCCcEEEEEcCCCcEEEEeccc---cc---CeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226          108 PVIKVIFHP---VFS-LMASCSEDATIRLWDYETGEYERALHGH---LD---SVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus       108 ~V~~v~~~p---~~~-~latgs~dg~v~vwd~~~~~~~~~~~~h---~~---~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      .++.+.|.-   ++. .++-+-.+|.|.++...-..-...+++-   .-   ...++.|++.+..++++-.+|.+.+-+.
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~  150 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE  150 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence            345455532   233 5666777888888865443322223221   11   2346789999999999999999986655


Q ss_pred             CCCeE--EEEEecCCcceEEEEEecC-CCEEEEEeCCCcEEEEEcC-CCeEEEE-eecCCccEEEEEECC-CCCEEEEEe
Q psy226          178 STYQC--LKTMQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVA-TGYCVKT-LTGHREWVRQIKVSP-DGTLLASCS  251 (406)
Q Consensus       178 ~~~~~--~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~iwd~~-~~~~~~~-~~~~~~~v~~l~~~~-~~~~l~s~~  251 (406)
                      .....  .++++.|+-+++-..|+.. .+.+.+|+.|+.+..||++ .+..+.. .+-|...|.+|.-+| .+.++++|+
T Consensus       151 t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs  230 (339)
T KOG0280|consen  151 TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS  230 (339)
T ss_pred             ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec
Confidence            44333  3478899999999999864 4688999999999999998 3333333 556778888888776 578999999


Q ss_pred             CCCeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe-----
Q psy226          252 NDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS-----  325 (406)
Q Consensus       252 ~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~-----  325 (406)
                      .|-.|++||.++. +++.. ..-.+.|..+.++|...                +..++++...| .+|-+...+.     
T Consensus       231 YDe~i~~~DtRnm~kPl~~-~~v~GGVWRi~~~p~~~----------------~~lL~~CMh~G-~ki~~~~~~~~e~~~  292 (339)
T KOG0280|consen  231 YDECIRVLDTRNMGKPLFK-AKVGGGVWRIKHHPEIF----------------HRLLAACMHNG-AKILDSSDKVLEFQI  292 (339)
T ss_pred             cccceeeeehhcccCcccc-CccccceEEEEecchhh----------------hHHHHHHHhcC-ceEEEecccccchhe
Confidence            9999999999853 33322 22346788888888532                22233333333 4444443322     


Q ss_pred             EEEEEeCCCcCEEEEEEcCCCCEEEEEe-CCCeEE-EEeCC
Q psy226          326 LLFTLIGHDNWVRGVTFHPGGKYLVSCG-DDKTLR-VWDTA  364 (406)
Q Consensus       326 ~~~~~~~h~~~v~~l~~s~~g~~l~sgs-~d~~i~-vwd~~  364 (406)
                      .......|.+-+..-.|.....+|+||+ .|+.|+ +|-.-
T Consensus       293 ~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~  333 (339)
T KOG0280|consen  293 VLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI  333 (339)
T ss_pred             eeeccccccceeeccccccccceeeeeeccccceeeeeeec
Confidence            2345566777777777765556788876 466655 66433

>KOG1064|consensus

Probab=99.35  E-value=8.4e-12  Score=127.67  Aligned_cols=211  Identities=19%  Similarity=0.328  Sum_probs=158.9

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee-cCCccEEEE
Q psy226          160 GKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT-GHREWVRQI  238 (406)
Q Consensus       160 g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l  238 (406)
                      ++.+.....++...-|.......  .++.+-..|.++.-+|...+.++|+.||.|++|.-..+..+..+. ..+..|+.+
T Consensus      2180 s~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred             cccCCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence            34444455555555565443222  233455678888889988999999999999999988887666654 233788999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEE---eCCCc
Q psy226          239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATG---SRDKT  315 (406)
Q Consensus       239 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---~~d~~  315 (406)
                      .|+.+|+.+..+..||.+.+|... +++....+.|........|..                    ..++++   +.++.
T Consensus      2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--------------------s~~~tag~s~d~~n 2316 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--------------------SLLATAGRSSDNRN 2316 (2439)
T ss_pred             hhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--------------------hhhhccccCCCCCc
Confidence            999999999999999999999986 444455556666655555542                    123333   35678


Q ss_pred             EEEEECCC---CeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEE
Q psy226          316 IKLWDVGS---GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVV  392 (406)
Q Consensus       316 i~lwd~~~---~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~  392 (406)
                      +.+||.--   ..++.  ..|.+.++++++-|..+.|+|||.+|.|++||++..+.+++++.         ++ ...+++
T Consensus      2317 ~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~ 2384 (2439)
T KOG1064|consen 2317 VCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFV 2384 (2439)
T ss_pred             ccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheee
Confidence            99999632   22333  78999999999999999999999999999999998887776654         45 667999


Q ss_pred             EeeCCCeEEEeec
Q psy226          393 TGSVDKTVKVWEC  405 (406)
Q Consensus       393 sgs~Dg~v~iw~~  405 (406)
                      +|+..|.++||++
T Consensus      2385 ~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRL 2397 (2439)
T ss_pred             ccCcccceEEEEc
Confidence            9999999999986

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.34  E-value=6e-09  Score=94.75  Aligned_cols=236  Identities=14%  Similarity=0.111  Sum_probs=145.4

Q ss_pred             EcCCCCEEEEEeC----------CCcEEEEEcCCCcEEEEecccc-------cCeeeEEECCCCCEEEEEe-C-CCcEEE
Q psy226          114 FHPVFSLMASCSE----------DATIRLWDYETGEYERALHGHL-------DSVQDIAFDQSGKLLVSCS-A-DMSLKL  174 (406)
Q Consensus       114 ~~p~~~~latgs~----------dg~v~vwd~~~~~~~~~~~~h~-------~~V~~l~~~~~g~~l~sgs-~-d~~i~v  174 (406)
                      ++|+++.|+.+..          +..|.+||..+.+....+..-.       .....++++|||++|+... . +..|-+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998876655          8899999999999888776322       2234789999999998766 3 689999


Q ss_pred             EeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC-CCeEE----EEeecCCccEEE-EEECC-CCCEE
Q psy226          175 WDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA-TGYCV----KTLTGHREWVRQ-IKVSP-DGTLL  247 (406)
Q Consensus       175 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~-~~~~~----~~~~~~~~~v~~-l~~~~-~~~~l  247 (406)
                      .|+.+++.+..+.-.. ...-...+ ...+++ -+.||......+. +|+..    ..+.+...++.. -.|.+ +|+++
T Consensus       133 vD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~  209 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPD-CYHIFPTA-NDTFFM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV  209 (352)
T ss_pred             EECCCCcEEEEEeCCC-CcEEEEec-CCccEE-EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence            9999998887765422 11111111 112221 1234443332221 12111    111110111100 03344 78777


Q ss_pred             EEEeCCCeEEEEeCCCccce-----eEEecC-------CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe----
Q psy226          248 ASCSNDHTARVWSLATKETK-----AELRGH-------DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS----  311 (406)
Q Consensus       248 ~s~~~d~~v~vwd~~~~~~~-----~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----  311 (406)
                      +.... |+|.+.|+......     ..+...       .....-++++|                  ++..+++..    
T Consensus       210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~------------------dg~~lyV~~~~~~  270 (352)
T TIGR02658       210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR------------------ARDRIYLLADQRA  270 (352)
T ss_pred             EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC------------------CCCEEEEEecCCc
Confidence            76666 99999997543321     111100       01111233333                  344454432    


Q ss_pred             ------CCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCccceee
Q psy226          312 ------RDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK-YLVSCG-DDKTLRVWDTANKRNMKTL  372 (406)
Q Consensus       312 ------~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~-~l~sgs-~d~~i~vwd~~~~~~~~~l  372 (406)
                            ..+.|.++|..+++.+..+.- ...+..++++|||+ .|++.. .++.|.|.|..+++.++++
T Consensus       271 ~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       271 KWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             cccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence                  225799999999999887763 34688999999999 777655 6788999999999988887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190|consensus

Probab=99.34  E-value=6.4e-12  Score=114.89  Aligned_cols=279  Identities=16%  Similarity=0.249  Sum_probs=186.7

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------CcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEE
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYET-------GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK  173 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~-------~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~  173 (406)
                      .+.||...|.+++--...+.++++|.|.+|++|.+..       .....++..|+.+|.++.|-.+-+++++  .|+-|.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giH  807 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIH  807 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcce
Confidence            4679999999888878889999999999999998754       2245677899999999999988888765  488999


Q ss_pred             EEeCCCCeEEEEEec--CCcceEEEEEecC--CCEEEE-EeCCCcEEEEEcCCCeEEEEe-----ecCCccEEEEEECCC
Q psy226          174 LWDMSTYQCLKTMQG--HDHNVTGVAFLPN--SDFVLS-ASRDKTIKMWEVATGYCVKTL-----TGHREWVRQIKVSPD  243 (406)
Q Consensus       174 vwd~~~~~~~~~~~~--h~~~v~~~~~~p~--~~~l~s-~s~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~~~~  243 (406)
                      +||.--+..+..+..  ..+.+..+...|+  ...++. |+...+|+++|.+.+.-...+     .+...-+++++..|.
T Consensus       808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~  887 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK  887 (1034)
T ss_pred             eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence            999765554432211  1223334444443  333444 478899999999887543333     345567899999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEE-EECC
Q psy226          244 GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL-WDVG  322 (406)
Q Consensus       244 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~l-wd~~  322 (406)
                      |+.++.+-..|++.+.|.+++..+...            .|.....-.  .     ..+....++....|.++.+ |..-
T Consensus       888 GN~lAa~LSnGci~~LDaR~G~vINsw------------rpmecdllq--l-----aapsdq~L~~saldHslaVnWhal  948 (1034)
T KOG4190|consen  888 GNKLAAALSNGCIAILDARNGKVINSW------------RPMECDLLQ--L-----AAPSDQALAQSALDHSLAVNWHAL  948 (1034)
T ss_pred             cchhhHHhcCCcEEEEecCCCceeccC------------Ccccchhhh--h-----cCchhHHHHhhcccceeEeeehhc
Confidence            999999999999999999988765433            332111000  0     0012345777777888888 9887


Q ss_pred             CCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCc---cceee--ccccceEEEEEEeCCCCEEEEeeC
Q psy226          323 SGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA-NKR---NMKTL--EAHSHFVTSLDFHRAHPYVVTGSV  396 (406)
Q Consensus       323 ~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~-~~~---~~~~l--~~h~~~v~~l~~~~~~~~l~sgs~  396 (406)
                      .|....+.+....+..-+  ..-|.-|++.-....+.||--. ...   .+..+  ....+..++++--|-++-+..|..
T Consensus       949 dgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne 1026 (1034)
T KOG4190|consen  949 DGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNE 1026 (1034)
T ss_pred             CCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCC
Confidence            777666655433322111  1235567777766777777321 111   11122  123445788888888777777888


Q ss_pred             CCeEEE
Q psy226          397 DKTVKV  402 (406)
Q Consensus       397 Dg~v~i  402 (406)
                      .|.|.+
T Consensus      1027 ~G~IaL 1032 (1034)
T KOG4190|consen 1027 HGAIAL 1032 (1034)
T ss_pred             CCceee
Confidence            898876

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.31  E-value=5e-09  Score=109.59  Aligned_cols=234  Identities=15%  Similarity=0.224  Sum_probs=153.2

Q ss_pred             eeEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEec--C------------CcceEEEEEecCCCEEEEEeC-CCcEE
Q psy226          152 QDIAFDQS-GKLLVSCSADMSLKLWDMSTYQCLKTMQG--H------------DHNVTGVAFLPNSDFVLSASR-DKTIK  215 (406)
Q Consensus       152 ~~l~~~~~-g~~l~sgs~d~~i~vwd~~~~~~~~~~~~--h------------~~~v~~~~~~p~~~~l~s~s~-d~~i~  215 (406)
                      ..+++++. |.+.++-+.++.|++||... +.+..+.+  .            -....++++.++++.|+++.. .+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35788875 55667777788999999864 33333322  1            113478999998887666544 56799


Q ss_pred             EEEcCCCeEEEEeecC-----------------CccEEEEEECC-CCCEEEEEeCCCeEEEEeCCCccceeEEecCC---
Q psy226          216 MWEVATGYCVKTLTGH-----------------REWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAELRGHD---  274 (406)
Q Consensus       216 iwd~~~~~~~~~~~~~-----------------~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---  274 (406)
                      .+|..++. +.++.+-                 -.....++++| ++.++++.+.++.|++||..++... .+.+..   
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            99987764 3333210                 01235789999 5677788888999999998765322 121110   


Q ss_pred             ------------ceEEEEEeCCCCCccccccccCCCCCCCCCC-EEEEEeCCCcEEEEECCCCeEEEEEeC---------
Q psy226          275 ------------HTVECVAWAPGVASESISEAAGRPPGQGGGP-YLATGSRDKTIKLWDVGSGSLLFTLIG---------  332 (406)
Q Consensus       275 ------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~lwd~~~~~~~~~~~~---------  332 (406)
                                  .....++++|                  ++. ++++-+.++.|++||+.++.......+         
T Consensus       728 ~~~g~~~~~~~~~~P~GIavsp------------------dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~  789 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSP------------------DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLF  789 (1057)
T ss_pred             cCCCCccccccccCccEEEEeC------------------CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccc
Confidence                        0112233333                  344 555666778999999987653211100         


Q ss_pred             ----C--------CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec-------------cccceEEEEEEeCC
Q psy226          333 ----H--------DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE-------------AHSHFVTSLDFHRA  387 (406)
Q Consensus       333 ----h--------~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~-------------~h~~~v~~l~~~~~  387 (406)
                          +        -....+++++++|..+++-+.+++|++||..++.......             +.-.....|+++++
T Consensus       790 ~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d  869 (1057)
T PLN02919        790 KFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN  869 (1057)
T ss_pred             cccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence                0        1124689999999988999999999999998765432211             11124678999999


Q ss_pred             CCEEEEeeCCCeEEEeecC
Q psy226          388 HPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       388 ~~~l~sgs~Dg~v~iw~~~  406 (406)
                      |+++++.+.+++|++||..
T Consensus       870 G~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        870 GRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             CCEEEEECCCCEEEEEECC
Confidence            9999999999999999963

>KOG4190|consensus

Probab=99.29  E-value=5.5e-12  Score=115.30  Aligned_cols=200  Identities=23%  Similarity=0.411  Sum_probs=146.5

Q ss_pred             EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC-------CeEEEEeecCCccEEEEEECCCCCEEEEEeCCCe
Q psy226          183 LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT-------GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHT  255 (406)
Q Consensus       183 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~  255 (406)
                      +..+.||...|..++-..+.+-++++|.|++|++|.++.       ..|..+++.|..+|..+.|-.+-+++++|  ||.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            456789999999888877888899999999999999853       34778889999999999999998888876  899


Q ss_pred             EEEEeCCCccceeEEe-----cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEE-EEEeCCCcEEEEECCCCeEEEE
Q psy226          256 ARVWSLATKETKAELR-----GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYL-ATGSRDKTIKLWDVGSGSLLFT  329 (406)
Q Consensus       256 v~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~lwd~~~~~~~~~  329 (406)
                      +++||.-.++++..+.     +-...|.|+   |.+                +..++ +.++...+|+++|.+.+.-+..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv----------------~~~iliAgcsaeSTVKl~DaRsce~~~E  866 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENV----------------DRHILIAGCSAESTVKLFDARSCEWTCE  866 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEec---ccC----------------cchheeeeccchhhheeeecccccceee
Confidence            9999976655544221     111223332   221                12234 4447889999999998765444


Q ss_pred             Ee-----CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEE-e
Q psy226          330 LI-----GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKV-W  403 (406)
Q Consensus       330 ~~-----~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~i-w  403 (406)
                      ++     +....+++++..|.|+.++.+-.+|+|-+.|.++|+.+..+....-....++ .|..+.|+....|.++.+ |
T Consensus       867 ~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnW  945 (1034)
T KOG4190|consen  867 LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNW  945 (1034)
T ss_pred             EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeee
Confidence            33     3456789999999999999999999999999999998877754433333333 355566666666666666 5


Q ss_pred             e
Q psy226          404 E  404 (406)
Q Consensus       404 ~  404 (406)
                      .
T Consensus       946 h  946 (1034)
T KOG4190|consen  946 H  946 (1034)
T ss_pred             h
Confidence            3

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.23  E-value=3.2e-10  Score=97.02  Aligned_cols=270  Identities=20%  Similarity=0.334  Sum_probs=162.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-----EEEEecccc------------cCeeeEEECCCC--CEEEEE
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE-----YERALHGHL------------DSVQDIAFDQSG--KLLVSC  166 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~-----~~~~~~~h~------------~~V~~l~~~~~g--~~l~sg  166 (406)
                      ...|++|.|...|.+|+||...|.|.+|.-+...     +...+++|.            ..|+.+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3568999999999999999999999999755432     233355554            247788887654  356666


Q ss_pred             eCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEE--------EeC-CCcEEEEEcCCCeEEEEeecCCccEEE
Q psy226          167 SADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLS--------ASR-DKTIKMWEVATGYCVKTLTGHREWVRQ  237 (406)
Q Consensus       167 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s--------~s~-d~~i~iwd~~~~~~~~~~~~~~~~v~~  237 (406)
                      +.|.+|++|.+..... +....  ...+.---+|.+.-+.+        .+. |..|....     +...-..|.--+++
T Consensus       106 tNdktiKlWKiyeknl-k~va~--nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p-----~rvyaNaH~yhiNS  177 (460)
T COG5170         106 TNDKTIKLWKIYEKNL-KVVAE--NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP-----CRVYANAHPYHINS  177 (460)
T ss_pred             cCCceeeeeeeecccc-hhhhc--cccccccccccCCCcCCHHHhhcccccccceEEEecc-----ceeccccceeEeee
Confidence            7999999998754211 11100  00000001111111110        000 11111110     11112467778999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCccc---eeEEecCC-----ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE
Q psy226          238 IKVSPDGTLLASCSNDHTARVWSLATKET---KAELRGHD-----HTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT  309 (406)
Q Consensus       238 l~~~~~~~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  309 (406)
                      ++++.|.+.++++ .|=.|.+|++.....   +..++.|.     ..|.+..|+|.                 ....+..
T Consensus       178 iS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~-----------------~cn~fmY  239 (460)
T COG5170         178 ISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPE-----------------MCNVFMY  239 (460)
T ss_pred             eeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHh-----------------HcceEEE
Confidence            9999999888876 577899999864322   12222222     23445555553                 2345667


Q ss_pred             EeCCCcEEEEECCCCeE------EE--E--------EeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cccceee
Q psy226          310 GSRDKTIKLWDVGSGSL------LF--T--------LIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN-KRNMKTL  372 (406)
Q Consensus       310 ~~~d~~i~lwd~~~~~~------~~--~--------~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~-~~~~~~l  372 (406)
                      .+..|.|++-|++...+      +.  +        +.+-...|..+.|+++|+++++-+. -+++|||.+. ..+++++
T Consensus       240 SsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi  318 (460)
T COG5170         240 SSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             ecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence            77889999999984321      11  1        1122346889999999999987665 5899999976 4567777


Q ss_pred             ccccc------------eE---EEEEEeCCCCEEEEeeCCCeEEE
Q psy226          373 EAHSH------------FV---TSLDFHRAHPYVVTGSVDKTVKV  402 (406)
Q Consensus       373 ~~h~~------------~v---~~l~~~~~~~~l~sgs~Dg~v~i  402 (406)
                      .-|..            .|   ..+.|+-+...+.+||.....-+
T Consensus       319 ~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi  363 (460)
T COG5170         319 PMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI  363 (460)
T ss_pred             chHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence            55532            22   34678888888888876654433

>KOG2314|consensus

Probab=99.21  E-value=9.2e-09  Score=94.62  Aligned_cols=272  Identities=15%  Similarity=0.242  Sum_probs=170.6

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC-----------CcEEEEeCC
Q psy226          110 IKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD-----------MSLKLWDMS  178 (406)
Q Consensus       110 ~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d-----------~~i~vwd~~  178 (406)
                      +-+.|||-|.+|+|--.-| |.+|--.+-...+.+. | ..|.-+.|||..++|+|=|..           ..++|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            5688999999999987765 7789655433333332 2 468889999999999986531           479999999


Q ss_pred             CCeEEEEEecCCc--ceE-EEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC---
Q psy226          179 TYQCLKTMQGHDH--NVT-GVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN---  252 (406)
Q Consensus       179 ~~~~~~~~~~h~~--~v~-~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~---  252 (406)
                      +|...+.+.....  .++ -..|+.|+++++--.. .+|.||+......+..-.-....|....|+|.+++||--..   
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence            9988877765222  222 3679999999887555 57899987664333222223455788899999888775332   


Q ss_pred             --CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC----------CCcEEEEE
Q psy226          253 --DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR----------DKTIKLWD  320 (406)
Q Consensus       253 --d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----------d~~i~lwd  320 (406)
                        -..+.+-.+.+.+.+....-|.-.-..+-|.                  .+|.||..--.          -..+-|+.
T Consensus       370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ------------------k~gdyLcvkvdR~tK~~~~g~f~n~eIfr  431 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ------------------KSGDYLCVKVDRHTKSKVKGQFSNLEIFR  431 (698)
T ss_pred             CCcceEEEEecCccceeeeccceeeeccEEEec------------------cCCcEEEEEEEeeccccccceEeeEEEEE
Confidence              1234455555544433322222111222332                  23555543211          11245555


Q ss_pred             CCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCC----CccceeeccccceEEEEEEeCCCCEEEE
Q psy226          321 VGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD---DKTLRVWDTAN----KRNMKTLEAHSHFVTSLDFHRAHPYVVT  393 (406)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~---d~~i~vwd~~~----~~~~~~l~~h~~~v~~l~~~~~~~~l~s  393 (406)
                      ++..........-...|...+|-|.|..+++-+.   ..++.+|-+.+    .+.++++..  ...+.|-|+|.|++++.
T Consensus       432 ireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvv  509 (698)
T KOG2314|consen  432 IREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVV  509 (698)
T ss_pred             eeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEE
Confidence            5544433333334567889999999987765443   35788887763    234555543  45788999999999887


Q ss_pred             e---eCCCeEEEeec
Q psy226          394 G---SVDKTVKVWEC  405 (406)
Q Consensus       394 g---s~Dg~v~iw~~  405 (406)
                      +   |..|.+.++|.
T Consensus       510 a~l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  510 AALVSRRGDLEFYDT  524 (698)
T ss_pred             EEecccccceEEEec
Confidence            5   45677877774

>KOG1354|consensus

Probab=99.19  E-value=1.7e-09  Score=93.86  Aligned_cols=279  Identities=17%  Similarity=0.298  Sum_probs=165.1

Q ss_pred             CCCeEEEEEcCCCC--EEEEEeCCCcEEEEEcCCCcEE-----------------------------------EE-eccc
Q psy226          106 RSPVIKVIFHPVFS--LMASCSEDATIRLWDYETGEYE-----------------------------------RA-LHGH  147 (406)
Q Consensus       106 ~~~V~~v~~~p~~~--~latgs~dg~v~vwd~~~~~~~-----------------------------------~~-~~~h  147 (406)
                      ..+|+.+.|.++++  .+.....|.+|++|.+......                                   +. -.+|
T Consensus        84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH  163 (433)
T KOG1354|consen   84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH  163 (433)
T ss_pred             hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence            35688999998764  6677788999999976432110                                   00 1357


Q ss_pred             ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC-CeEE--EEEecC-----CcceEEEEEecCC-CEEEEEeCCCcEEEEE
Q psy226          148 LDSVQDIAFDQSGKLLVSCSADMSLKLWDMST-YQCL--KTMQGH-----DHNVTGVAFLPNS-DFVLSASRDKTIKMWE  218 (406)
Q Consensus       148 ~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~-~~~~--~~~~~h-----~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd  218 (406)
                      +--|+++.++.|+..++++ .|-.|.+|+++- .++.  -.++.+     ..-|++..|+|.. +.++-.|..|+|++-|
T Consensus       164 tyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  164 TYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             eeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence            7779999999999988876 678899999862 2221  122223     2358889999965 4666678899999999


Q ss_pred             cCCCeEE----EEe------------ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCC-CccceeEEecCCceEE--E
Q psy226          219 VATGYCV----KTL------------TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA-TKETKAELRGHDHTVE--C  279 (406)
Q Consensus       219 ~~~~~~~----~~~------------~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~v~--~  279 (406)
                      ++.....    +.+            .+--..|..+.|+++|+++++-.. -+|++||+. ..+++.....|..--.  |
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc  321 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC  321 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH
Confidence            9843211    111            112245778999999999987532 689999994 4455555555542100  0


Q ss_pred             EEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE-EEEEeCCCcC--EEEEEEcCCCCEEEEEeCCC
Q psy226          280 VAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL-LFTLIGHDNW--VRGVTFHPGGKYLVSCGDDK  356 (406)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~-~~~~~~h~~~--v~~l~~s~~g~~l~sgs~d~  356 (406)
                      -.+..+.....+     .....+++.++++|+..+..+++++..|.. ..++......  ...+   ..-+.+.+++...
T Consensus       322 ~lYEnD~IfdKF-----ec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~  393 (433)
T KOG1354|consen  322 SLYENDAIFDKF-----ECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRK  393 (433)
T ss_pred             HHhhccchhhee-----EEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCcc
Confidence            000000000000     000122466899999999999999765543 2233322111  2222   1223455555554


Q ss_pred             eEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEe
Q psy226          357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW  403 (406)
Q Consensus       357 ~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw  403 (406)
                      ...+|-       ..+. ....|...+|||..+.+|.+.... +.+|
T Consensus       394 ~~~~~v-------d~ld-f~kkilh~aWhp~en~ia~aatnn-lyif  431 (433)
T KOG1354|consen  394 RDEISV-------DALD-FRKKILHTAWHPKENSIAVAATNN-LYIF  431 (433)
T ss_pred             cccccc-------chhh-hhhHHHhhccCCccceeeeeecCc-eEEe
Confidence            433321       1111 122355568999999998876543 4444

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.19  E-value=4.9e-08  Score=100.50  Aligned_cols=276  Identities=15%  Similarity=0.227  Sum_probs=179.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEE----EcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLW----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vw----d~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      ..+.|.++.+-++...++.+..+|.|.+.    |..+...+. ...-...|.+++||||+..|+....++++.+.+-. +
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~-VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-f  151 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI-VGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-F  151 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE-EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-c
Confidence            44679999999999999999999999999    555544321 12234689999999999999999999988886421 1


Q ss_pred             eEE------------------------EEEec------------------------CCcceEEEEEecCCCEEEEEeC--
Q psy226          181 QCL------------------------KTMQG------------------------HDHNVTGVAFLPNSDFVLSASR--  210 (406)
Q Consensus       181 ~~~------------------------~~~~~------------------------h~~~v~~~~~~p~~~~l~s~s~--  210 (406)
                      ..+                        ..++|                        +++.-..++|..||.++++.+-  
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~  231 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP  231 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence            000                        00000                        2234457889999999988764  


Q ss_pred             -C---CcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC---CCeEEEEeCCCccceeEEe----cCCceEEE
Q psy226          211 -D---KTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN---DHTARVWSLATKETKAELR----GHDHTVEC  279 (406)
Q Consensus       211 -d---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~~----~~~~~v~~  279 (406)
                       .   +.+|||+-+ |....+...-.+--.+++|.|.|+++|+...   ...|.+|.- ++-...++.    .....|..
T Consensus       232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~  309 (928)
T PF04762_consen  232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIE  309 (928)
T ss_pred             CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeE
Confidence             2   579999865 6544443333333357899999999998764   345556653 332222322    34567899


Q ss_pred             EEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe----EEEEEeCCCcCEEEEEEcCCC-CEEEEEeC
Q psy226          280 VAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS----LLFTLIGHDNWVRGVTFHPGG-KYLVSCGD  354 (406)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~----~~~~~~~h~~~v~~l~~s~~g-~~l~sgs~  354 (406)
                      +.|++                  ++.+||....|. |.+|-..+..    ....+.. ...+..+.|+|.. ..|.....
T Consensus       310 l~Wn~------------------ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~  369 (928)
T PF04762_consen  310 LAWNS------------------DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTS  369 (928)
T ss_pred             EEECC------------------CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEec
Confidence            99987                  466788877655 9999877643    1112222 2234458898853 34555555


Q ss_pred             CCeEEEEe----CCCCc--------cce------------------------eeccccceEEEEEEeCCCCEEEEeeCCC
Q psy226          355 DKTLRVWD----TANKR--------NMK------------------------TLEAHSHFVTSLDFHRAHPYVVTGSVDK  398 (406)
Q Consensus       355 d~~i~vwd----~~~~~--------~~~------------------------~l~~h~~~v~~l~~~~~~~~l~sgs~Dg  398 (406)
                      +|.+..++    +..+.        .+.                        ++. -...|.+++|++++..+|+-..||
T Consensus       370 ~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~  448 (928)
T PF04762_consen  370 NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDG  448 (928)
T ss_pred             CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCC
Confidence            45554433    21110        011                        111 234689999999998899999999


Q ss_pred             eEEEeec
Q psy226          399 TVKVWEC  405 (406)
Q Consensus       399 ~v~iw~~  405 (406)
                      .|.+|..
T Consensus       449 ~l~~~~~  455 (928)
T PF04762_consen  449 SLSIYEW  455 (928)
T ss_pred             CEEEEEe
Confidence            9999873

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.19  E-value=1.8e-07  Score=82.29  Aligned_cols=259  Identities=14%  Similarity=0.253  Sum_probs=168.3

Q ss_pred             CCcEEEEEcCCC--cEE-EEecccccCeeeEEECCCCCEEEEEeCC---CcEEEEeCCC--CeE--EEEEecCCcceEEE
Q psy226          127 DATIRLWDYETG--EYE-RALHGHLDSVQDIAFDQSGKLLVSCSAD---MSLKLWDMST--YQC--LKTMQGHDHNVTGV  196 (406)
Q Consensus       127 dg~v~vwd~~~~--~~~-~~~~~h~~~V~~l~~~~~g~~l~sgs~d---~~i~vwd~~~--~~~--~~~~~~h~~~v~~~  196 (406)
                      +.-|++|++.+.  ++. ..+-.+...++=|+|+|++++|.++..+   |.|--|.+..  |..  +........+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            567999988743  221 1223466778889999999999988655   6677776653  432  11111222334779


Q ss_pred             EEecCCCEEEEEeC-CCcEEEEEcCC-CeEEE--EeecCCcc----------EEEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy226          197 AFLPNSDFVLSASR-DKTIKMWEVAT-GYCVK--TLTGHREW----------VRQIKVSPDGTLLASCSN-DHTARVWSL  261 (406)
Q Consensus       197 ~~~p~~~~l~s~s~-d~~i~iwd~~~-~~~~~--~~~~~~~~----------v~~l~~~~~~~~l~s~~~-d~~v~vwd~  261 (406)
                      +++++++++++++. -|.|.++-++. |....  .+..|...          +....+.|++++++++.. -..|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999999998876 47899998865 43211  12223333          778899999999988864 357899998


Q ss_pred             CCcccee----EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe-CCCcEEEEECCCC-eEEEEEeC---
Q psy226          262 ATKETKA----ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS-RDKTIKLWDVGSG-SLLFTLIG---  332 (406)
Q Consensus       262 ~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~lwd~~~~-~~~~~~~~---  332 (406)
                      ..+....    .+ ......+-+.|+|                  ++++...-+ -+++|-+|..... ..+..+..   
T Consensus       175 ~dg~L~~~~~~~v-~~G~GPRHi~FHp------------------n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t  235 (346)
T COG2706         175 DDGKLTPADPAEV-KPGAGPRHIVFHP------------------NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT  235 (346)
T ss_pred             ccCcccccccccc-CCCCCcceEEEcC------------------CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc
Confidence            7543321    11 2223445667776                  466655544 4889999988663 22222221   


Q ss_pred             ------CCcCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCC--Cc--cceeeccccceEEEEEEeCCCCEEEEeeCCC-eE
Q psy226          333 ------HDNWVRGVTFHPGGKYLVSCGD-DKTLRVWDTAN--KR--NMKTLEAHSHFVTSLDFHRAHPYVVTGSVDK-TV  400 (406)
Q Consensus       333 ------h~~~v~~l~~s~~g~~l~sgs~-d~~i~vwd~~~--~~--~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg-~v  400 (406)
                            -..+..+|..+|+|+||.++-. ...|-+|.+..  ++  .+.....+...-+...|++++++|+++..|+ .|
T Consensus       236 lP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i  315 (346)
T COG2706         236 LPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNI  315 (346)
T ss_pred             CccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcE
Confidence                  2457889999999999987642 34788887653  32  1222334555678999999999998877654 57


Q ss_pred             EEee
Q psy226          401 KVWE  404 (406)
Q Consensus       401 ~iw~  404 (406)
                      .+|.
T Consensus       316 ~vf~  319 (346)
T COG2706         316 TVFE  319 (346)
T ss_pred             EEEE
Confidence            6664

>KOG3914|consensus

Probab=99.19  E-value=2.6e-10  Score=100.83  Aligned_cols=159  Identities=19%  Similarity=0.325  Sum_probs=113.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE----EEEecccccCeeeEEECCCCCEEE---EEeCCCcEEEEeCCCCe
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYETGEY----ERALHGHLDSVQDIAFDQSGKLLV---SCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~----~~~~~~h~~~V~~l~~~~~g~~l~---sgs~d~~i~vwd~~~~~  181 (406)
                      +..+..+|.+++||.+..+....++++.....    ..... -...-+++.|..+.....   .++....+.+|....+.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            34456788889999888888877777655432    11111 112223344444433333   34445566677666543


Q ss_pred             EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ecCCccEEEEEECCCCCEEEEEeCCCeEEEEe
Q psy226          182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL-TGHREWVRQIKVSPDGTLLASCSNDHTARVWS  260 (406)
Q Consensus       182 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd  260 (406)
                       ...+.||-.-+..++++||+++++++.+|..|++-....-..+..+ -||...|..+++-++ ..|+++|.|+++++||
T Consensus       144 -~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  144 -CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD  221 (390)
T ss_pred             -cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence             3456689999999999999999999999999999887665555554 479999999998754 4599999999999999


Q ss_pred             CCCccceeEE
Q psy226          261 LATKETKAEL  270 (406)
Q Consensus       261 ~~~~~~~~~~  270 (406)
                      +.+++.+..+
T Consensus       222 ~~sgk~L~t~  231 (390)
T KOG3914|consen  222 ITSGKLLDTC  231 (390)
T ss_pred             cccCCccccc
Confidence            9998876544

>KOG0309|consensus

Probab=99.17  E-value=4.8e-10  Score=106.04  Aligned_cols=280  Identities=19%  Similarity=0.313  Sum_probs=184.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-cEEEEeccccc--CeeeEEECCCCC---EEEEEeCCCcEEEEeCCC
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETG-EYERALHGHLD--SVQDIAFDQSGK---LLVSCSADMSLKLWDMST  179 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~-~~~~~~~~h~~--~V~~l~~~~~g~---~l~sgs~d~~i~vwd~~~  179 (406)
                      .+++.++.++|.|+-+|.++.-|- .+-|+... ...+-++ |..  .|-++.|++...   .+++.+. ....+|++..
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~  100 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAK  100 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCc-chhhhhhhhc
Confidence            457888999999999999988774 44565442 2222222 333  467788887542   4444444 4456898752


Q ss_pred             ---CeEEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCe-EEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          180 ---YQCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGY-CVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       180 ---~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                         ...--.+.||...|+.+-|+|.. ..+++++-|..+..||+++.. .+.....-......+.|+.....+.+.+..+
T Consensus       101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~  180 (1081)
T KOG0309|consen  101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN  180 (1081)
T ss_pred             CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence               23334567899999999999865 578999999999999998743 4444444444566788987655666667888


Q ss_pred             eEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEE-EEEeC
Q psy226          255 TARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLL-FTLIG  332 (406)
Q Consensus       255 ~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~-~~~~~  332 (406)
                      .|++||++.+ .++..+++|...|..+.|....                 -..+.+++.|++|++||....... .....
T Consensus       181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~-----------------~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt  243 (1081)
T KOG0309|consen  181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK-----------------YSEIMSSSNDGTVKFWDYSKSTTESKRTVT  243 (1081)
T ss_pred             ceEEEeccCCCcceEEecccceeeehHHHhhhh-----------------hhhhcccCCCCceeeecccccccccceecc
Confidence            9999999875 4677888888888888775421                 124778899999999997643211 11111


Q ss_pred             CCcCEEEEEEcCCCC--EEE-EEeC--------CCeEEEEeCCC-CccceeeccccceEEEEEEeCCC----------CE
Q psy226          333 HDNWVRGVTFHPGGK--YLV-SCGD--------DKTLRVWDTAN-KRNMKTLEAHSHFVTSLDFHRAH----------PY  390 (406)
Q Consensus       333 h~~~v~~l~~s~~g~--~l~-sgs~--------d~~i~vwd~~~-~~~~~~l~~h~~~v~~l~~~~~~----------~~  390 (406)
                      ...+|..-.+-|-|+  ++. ..|.        +..-..|+..+ .+.+.++.+|...|....|-..+          -.
T Consensus       244 t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQ  323 (1081)
T KOG0309|consen  244 TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQ  323 (1081)
T ss_pred             ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcccee
Confidence            223344444455332  211 1111        12222344433 35788999999988776665433          26


Q ss_pred             EEEeeCCCeEEEeec
Q psy226          391 VVTGSVDKTVKVWEC  405 (406)
Q Consensus       391 l~sgs~Dg~v~iw~~  405 (406)
                      |+|=|.|.++++|-+
T Consensus       324 LVTWSkD~~lrlWpI  338 (1081)
T KOG0309|consen  324 LVTWSKDQTLRLWPI  338 (1081)
T ss_pred             EEEeecCCceEeeec
Confidence            999999999999964

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.16  E-value=2.1e-07  Score=81.82  Aligned_cols=236  Identities=16%  Similarity=0.267  Sum_probs=150.3

Q ss_pred             EEEEcC-CCCEEEEEeCCCc-EEEEEcCCCcEEEEecccccCee--eEEECCCCCEEEEEeCC-----CcEEEEeCC-CC
Q psy226          111 KVIFHP-VFSLMASCSEDAT-IRLWDYETGEYERALHGHLDSVQ--DIAFDQSGKLLVSCSAD-----MSLKLWDMS-TY  180 (406)
Q Consensus       111 ~v~~~p-~~~~latgs~dg~-v~vwd~~~~~~~~~~~~h~~~V~--~l~~~~~g~~l~sgs~d-----~~i~vwd~~-~~  180 (406)
                      .++.+| ....++.+-.-|+ ..+||..+++....+....+.-.  --.|++||++|++.-+|     |.|-|||.. ++
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            467788 4556667777665 67899999988776643222211  26799999999987554     789999998 77


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeC------------------CCcEEEEEcCCCeEEEE--e--ecCCccEEEE
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASR------------------DKTIKMWEVATGYCVKT--L--TGHREWVRQI  238 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~------------------d~~i~iwd~~~~~~~~~--~--~~~~~~v~~l  238 (406)
                      +.+..+..|--.-..+.+.|++..|+.+..                  +.++...|..+|..+..  +  ..|.-.++-+
T Consensus        89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL  168 (305)
T PF07433_consen   89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL  168 (305)
T ss_pred             EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence            888888777656667889999988777632                  22344445555555444  3  2255556666


Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEE
Q psy226          239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL  318 (406)
Q Consensus       239 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~l  318 (406)
                      +++++|..++.+-..|--                                            ...-+.++.-..++.++.
T Consensus       169 a~~~~G~V~~a~Q~qg~~--------------------------------------------~~~~PLva~~~~g~~~~~  204 (305)
T PF07433_consen  169 AVDGDGTVAFAMQYQGDP--------------------------------------------GDAPPLVALHRRGGALRL  204 (305)
T ss_pred             EecCCCcEEEEEecCCCC--------------------------------------------CccCCeEEEEcCCCccee
Confidence            666665544433222110                                            001123444444444555


Q ss_pred             EECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCC
Q psy226          319 WDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCG-DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVD  397 (406)
Q Consensus       319 wd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs-~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~D  397 (406)
                      .+.....    ...-.+++-+|+++++|.++++.| ..+.+.+||..+++.+....-.  .+..|+-.+++ +++|.+.-
T Consensus       205 ~~~p~~~----~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  205 LPAPEEQ----WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             ccCChHH----HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCCc
Confidence            4443221    112346799999999998886555 6789999999999887766443  36677777776 67666543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.16  E-value=4.9e-08  Score=85.71  Aligned_cols=225  Identities=15%  Similarity=0.107  Sum_probs=142.3

Q ss_pred             CCcEEEEEcCCCcEEEEecccccCeeeEE--ECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCE
Q psy226          127 DATIRLWDYETGEYERALHGHLDSVQDIA--FDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDF  204 (406)
Q Consensus       127 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~--~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  204 (406)
                      +|+|..||..+|+.+....- ........  ..+++..+++++.++.+..||..+++.+...... ..+...- ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eecccc
Confidence            68999999999988776643 11122222  2235677888899999999999999988776642 2221111 224566


Q ss_pred             EEEEeCCCcEEEEEcCCCeEEEEe-ecCCc---cEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceE-EE
Q psy226          205 VLSASRDKTIKMWEVATGYCVKTL-TGHRE---WVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV-EC  279 (406)
Q Consensus       205 l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~---~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v-~~  279 (406)
                      ++.++.|+.+..+|..+|..+... .....   .........++..++.+..++.+..+|+.+++.+-......... ..
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~  158 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP  158 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence            777778889999999999988874 32211   11222223347888888889999999999998876665433221 00


Q ss_pred             E-EeCCCCCccccccccCCCCCCCCCCEEEEEeCCCc-EEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCe
Q psy226          280 V-AWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT-IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT  357 (406)
Q Consensus       280 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~  357 (406)
                      + .+..         ....+.. .++ .++.++.++. +.+ |+.+++.+....  ...+..+ ..+++..|+.++.++.
T Consensus       159 ~~~~~~---------~~~~~~~-~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~  223 (238)
T PF13360_consen  159 ISSFSD---------INGSPVI-SDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGR  223 (238)
T ss_dssp             EEEETT---------EEEEEEC-CTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTE
T ss_pred             eeeecc---------cccceEE-ECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCE
Confidence            0 0000         0000000 023 5666777775 555 999999765433  2223221 3467888888889999


Q ss_pred             EEEEeCCCCccc
Q psy226          358 LRVWDTANKRNM  369 (406)
Q Consensus       358 i~vwd~~~~~~~  369 (406)
                      |..||.++++.+
T Consensus       224 l~~~d~~tG~~~  235 (238)
T PF13360_consen  224 LYALDLKTGKVV  235 (238)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECCCCCEE
Confidence            999999998754

...

>KOG1912|consensus

Probab=99.16  E-value=6.3e-08  Score=92.58  Aligned_cols=291  Identities=18%  Similarity=0.213  Sum_probs=180.4

Q ss_pred             EeccCCCCeEEEEEcCC------------CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECC---CC-CEEE
Q psy226          101 ALSGHRSPVIKVIFHPV------------FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQ---SG-KLLV  164 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~------------~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~---~g-~~l~  164 (406)
                      .+.-|...|+.|.|.|.            .-+||++.-.|.|.+||...+.....+..|.++|.+++|-+   +. ..|+
T Consensus        50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll  129 (1062)
T KOG1912|consen   50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL  129 (1062)
T ss_pred             ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence            35668899999999873            13788999999999999999888888888999999999865   33 4666


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEec-CCCEEEEEeCCCcEEEEEcC-------CCeEEEEeecCCc---
Q psy226          165 SCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP-NSDFVLSASRDKTIKMWEVA-------TGYCVKTLTGHRE---  233 (406)
Q Consensus       165 sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~iwd~~-------~~~~~~~~~~~~~---  233 (406)
                      .-....++.+|+..+|+......-......|+.+.| +...+..-+..|.+.+-+.-       .|+..+.-..|++   
T Consensus       130 aIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~  209 (1062)
T KOG1912|consen  130 AIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH  209 (1062)
T ss_pred             EecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh
Confidence            666778999999999987766554444566788888 44455555555666555431       1233333223322   


Q ss_pred             ----------------------cEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCcccc
Q psy226          234 ----------------------WVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESI  291 (406)
Q Consensus       234 ----------------------~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  291 (406)
                                            ....++|+|.-+.++-...-.-+.++|++-...+....-....+.-+.+.|+...+..
T Consensus       210 lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~L  289 (1062)
T KOG1912|consen  210 LERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDAL  289 (1062)
T ss_pred             hhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceE
Confidence                                  1223567776655555556677888998766665554444444445555554321110


Q ss_pred             c----------------------------cccC------------CCC----CCCCCCEEEEEeCCCcEEEEECCCCeEE
Q psy226          292 S----------------------------EAAG------------RPP----GQGGGPYLATGSRDKTIKLWDVGSGSLL  327 (406)
Q Consensus       292 ~----------------------------~~~~------------~~~----~~~~~~~l~s~~~d~~i~lwd~~~~~~~  327 (406)
                      .                            ...+            .|.    ...+...++.--.+|.+.+|.+++|+..
T Consensus       290 fclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~  369 (1062)
T KOG1912|consen  290 FCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH  369 (1062)
T ss_pred             EEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence            0                            0000            000    0000111112223455666666543311


Q ss_pred             E-------------E------------------EeCCCcCEEEEEEcC-----------CC-------CEEEEEeCCCeE
Q psy226          328 F-------------T------------------LIGHDNWVRGVTFHP-----------GG-------KYLVSCGDDKTL  358 (406)
Q Consensus       328 ~-------------~------------------~~~h~~~v~~l~~s~-----------~g-------~~l~sgs~d~~i  358 (406)
                      .             .                  ..+|....++...+|           .|       ..++.|...|+|
T Consensus       370 ~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV  449 (1062)
T KOG1912|consen  370 LDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV  449 (1062)
T ss_pred             cccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence            0             0                  013444444443333           22       256789999999


Q ss_pred             EEEeCCCCccceeeccccceEEEEEEeCCCCEE
Q psy226          359 RVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYV  391 (406)
Q Consensus       359 ~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l  391 (406)
                      .|.|+.++...+.+..|...|.++.|--..+++
T Consensus       450 ~vvdvst~~v~~~fsvht~~VkgleW~g~sslv  482 (1062)
T KOG1912|consen  450 DVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLV  482 (1062)
T ss_pred             EEEEecchhhhhhhcccccceeeeeeccceeEE
Confidence            999999999999999999999999997665544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.15  E-value=1.4e-07  Score=97.11  Aligned_cols=278  Identities=17%  Similarity=0.270  Sum_probs=170.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC---------------C--------CcEEEEecc----------------
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYE---------------T--------GEYERALHG----------------  146 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~---------------~--------~~~~~~~~~----------------  146 (406)
                      ...|.|++||||+.+||....+|+|.+-.-.               .        |+.+..++|                
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            4579999999999999999999998876311               0        111111211                


Q ss_pred             --------cccCeeeEEECCCCCEEEEEeC---C---CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeC--
Q psy226          147 --------HLDSVQDIAFDQSGKLLVSCSA---D---MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR--  210 (406)
Q Consensus       147 --------h~~~V~~l~~~~~g~~l~sgs~---d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--  210 (406)
                              +.+.-..++|-.||.++|+.+-   .   +.+|||+-+ |....+-..-.+--.+++|.|.|+++++...  
T Consensus       200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~  278 (928)
T PF04762_consen  200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLP  278 (928)
T ss_pred             ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcC
Confidence                    1123346889999999998774   2   579999865 5443333222233346899999999998765  


Q ss_pred             -CCcEEEEEcCCCeEEEEee----cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCc--cceeEEecC-CceEEEEEe
Q psy226          211 -DKTIKMWEVATGYCVKTLT----GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK--ETKAELRGH-DHTVECVAW  282 (406)
Q Consensus       211 -d~~i~iwd~~~~~~~~~~~----~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~-~~~v~~~~~  282 (406)
                       ...|.+|. ++|..-..|.    .....|..+.|++|+..||....|. |.+|-..+-  -..+++... ...+..+.|
T Consensus       279 ~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~W  356 (928)
T PF04762_consen  279 DRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKW  356 (928)
T ss_pred             CCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEE
Confidence             34566665 3443322222    3456789999999999999977665 999987653  233444322 223445888


Q ss_pred             CCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEE-------------------------------EECCCCeE-----
Q psy226          283 APGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL-------------------------------WDVGSGSL-----  326 (406)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~l-------------------------------wd~~~~~~-----  326 (406)
                      +|....                 .|...+.+|.+..                               -.++....     
T Consensus       357 dpe~p~-----------------~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs  419 (928)
T PF04762_consen  357 DPEKPL-----------------RLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMS  419 (928)
T ss_pred             CCCCCC-----------------EEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHh
Confidence            885321                 2333333333322                               22221110     


Q ss_pred             EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--------ceeec----------cccceEEEEEEeCCC
Q psy226          327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN--------MKTLE----------AHSHFVTSLDFHRAH  388 (406)
Q Consensus       327 ~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~--------~~~l~----------~h~~~v~~l~~~~~~  388 (406)
                      .+.+ .-...|.+++|++++..+++-..||.|.+|.......        ...+.          .-...+..++|..+.
T Consensus       420 ~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (928)
T PF04762_consen  420 SYEL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDD  498 (928)
T ss_pred             ceEE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCC
Confidence            0111 2346799999999998899999999999998543211        11111          123347888888887


Q ss_pred             CEEEEeeCC---CeEEEee
Q psy226          389 PYVVTGSVD---KTVKVWE  404 (406)
Q Consensus       389 ~~l~sgs~D---g~v~iw~  404 (406)
                      .+++....+   +.+.+++
T Consensus       499 ~~~~~~~~~~~~~~i~~~~  517 (928)
T PF04762_consen  499 TLLVLSDSDSNQSKIVLVD  517 (928)
T ss_pred             EEEEEEecCcccceEEEEE
Confidence            766665554   4555554

>KOG2315|consensus

Probab=99.13  E-value=3.5e-08  Score=91.08  Aligned_cols=247  Identities=13%  Similarity=0.183  Sum_probs=157.6

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCC--EEEE-----EeCCCcEEEEeCCCCeE
Q psy226          110 IKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK--LLVS-----CSADMSLKLWDMSTYQC  182 (406)
Q Consensus       110 ~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~--~l~s-----gs~d~~i~vwd~~~~~~  182 (406)
                      .+..|++|..+.|= -..+.|.+||..+-+.. .-+-|...|+.+.++|.+.  .+|+     ++.-+.|+||...-...
T Consensus       129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~  206 (566)
T KOG2315|consen  129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ  206 (566)
T ss_pred             cccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence            46778887665432 22467999998773321 1223678899999998743  4443     45556899998762111


Q ss_pred             -----EEEEecCCcceEEEEEecCCC-EEEEEeC--C---------CcEEEEEcCCCeEEEEeecCCccEEEEEECCCCC
Q psy226          183 -----LKTMQGHDHNVTGVAFLPNSD-FVLSASR--D---------KTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT  245 (406)
Q Consensus       183 -----~~~~~~h~~~v~~~~~~p~~~-~l~s~s~--d---------~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  245 (406)
                           .+++.  ...=..+.|++-|. +|+.++.  |         .++.+.++....+.-.+ ...++|.++.|+|+|+
T Consensus       207 ~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~  283 (566)
T KOG2315|consen  207 HQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGR  283 (566)
T ss_pred             cchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCC
Confidence                 11111  11223477887665 3333332  2         36777777633333333 3468899999999998


Q ss_pred             EEEE--EeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC---CcEEEEE
Q psy226          246 LLAS--CSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD---KTIKLWD  320 (406)
Q Consensus       246 ~l~s--~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~lwd  320 (406)
                      .|+.  |-.-..+.|+|++. .++..  ..+++-.++-|+|                  .|.+++.++.+   |.|-|||
T Consensus       284 EF~VvyGfMPAkvtifnlr~-~~v~d--f~egpRN~~~fnp------------------~g~ii~lAGFGNL~G~mEvwD  342 (566)
T KOG2315|consen  284 EFAVVYGFMPAKVTIFNLRG-KPVFD--FPEGPRNTAFFNP------------------HGNIILLAGFGNLPGDMEVWD  342 (566)
T ss_pred             EEEEEEecccceEEEEcCCC-CEeEe--CCCCCccceEECC------------------CCCEEEEeecCCCCCceEEEe
Confidence            8765  44678899999864 23332  3345556777887                  47777777764   6899999


Q ss_pred             CCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCccceeeccccceEEEEEEeC
Q psy226          321 VGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD------DKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR  386 (406)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~  386 (406)
                      +.+.+++..+....  .+-+.|+|||++++++..      |+.++||++. |..+..-...+ ....+.|-|
T Consensus       343 v~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~s-EL~qv~W~P  410 (566)
T KOG2315|consen  343 VPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKS-ELLQVEWRP  410 (566)
T ss_pred             ccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhH-hHhheeeee
Confidence            99988887776543  456799999999988764      7889999975 44433222111 345566654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.13  E-value=8.7e-07  Score=78.20  Aligned_cols=217  Identities=19%  Similarity=0.145  Sum_probs=141.0

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEEC-CCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q psy226          111 KVIFHP-VFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFD-QSGKLLVSCSADMSLKLWDMSTYQCLKTMQG  188 (406)
Q Consensus       111 ~v~~~p-~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~-~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~  188 (406)
                      +++|.+ ++.++++--..+.|..||..++.....-.   .....+++. ++| .|+.+..++ +.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~---~~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL---PGPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES---SSEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec---CCCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            467888 77788888789999999998886543221   126677777 564 555555554 55569988765433332


Q ss_pred             -----CCcceEEEEEecCCCEEEEEeCC--------CcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEE-EEeCCC
Q psy226          189 -----HDHNVTGVAFLPNSDFVLSASRD--------KTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLA-SCSNDH  254 (406)
Q Consensus       189 -----h~~~v~~~~~~p~~~~l~s~s~d--------~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~  254 (406)
                           .......+++.|+|++.++....        +.|..++.. +.... +...-...+.|+|+|+++.|+ +-+..+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcchheeecccccc
Confidence                 34567889999999977776544        446666666 44333 333345678999999998765 667788


Q ss_pred             eEEEEeCCCccc-e---eEE---ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEE
Q psy226          255 TARVWSLATKET-K---AEL---RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLL  327 (406)
Q Consensus       255 ~v~vwd~~~~~~-~---~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~  327 (406)
                      .|..+++..... +   ..+   .........+++..                  .|.+.++....+.|.++|.. |+.+
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~------------------~G~l~va~~~~~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS------------------DGNLWVADWGGGRIVVFDPD-GKLL  217 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT------------------TS-EEEEEETTTEEEEEETT-SCEE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC------------------CCCEEEEEcCCCEEEEECCC-ccEE
Confidence            899998864322 1   111   11112244555543                  46777777788999999987 8887


Q ss_pred             EEEeCCCcCEEEEEE-cCCCCEEEEEe
Q psy226          328 FTLIGHDNWVRGVTF-HPGGKYLVSCG  353 (406)
Q Consensus       328 ~~~~~h~~~v~~l~~-s~~g~~l~sgs  353 (406)
                      ..+.-....+++++| -|+.+.|+..+
T Consensus       218 ~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  218 REIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            776655568999999 46666665443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532|consensus

Probab=99.13  E-value=2.2e-08  Score=84.19  Aligned_cols=218  Identities=15%  Similarity=0.055  Sum_probs=138.1

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEE-EEEecCCcceEEEEEecC-CCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEE
Q psy226          160 GKLLVSCSADMSLKLWDMSTYQCL-KTMQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQ  237 (406)
Q Consensus       160 g~~l~sgs~d~~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~  237 (406)
                      -.+|+.|+.-|...+|...+.+.. +....|...|.-+.=.-+ .--+..++.|.++++.++.-+.......-..-.+..
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            358999999999999998765432 222223332221111111 224677899999999988655433222211123788


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCccce--e-EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC
Q psy226          238 IKVSPDGTLLASCSNDHTARVWSLATKETK--A-ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK  314 (406)
Q Consensus       238 l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~--~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  314 (406)
                      +++++|++++++.+....|-.|.+......  . .....+..--+..|+.                  ....+|+++.||
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~------------------~~~~FAv~~Qdg  225 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE------------------NDLQFAVVFQDG  225 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc------------------CcceEEEEecCC
Confidence            999999999999999999999988654321  1 1111122222334432                  456799999999


Q ss_pred             cEEEEECCCCeEEEE-----EeCCCcCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCccceeecc-------c-cceE
Q psy226          315 TIKLWDVGSGSLLFT-----LIGHDNWVRGVTFHPGGK--YLVSCGDDKTLRVWDTANKRNMKTLEA-------H-SHFV  379 (406)
Q Consensus       315 ~i~lwd~~~~~~~~~-----~~~h~~~v~~l~~s~~g~--~l~sgs~d~~i~vwd~~~~~~~~~l~~-------h-~~~v  379 (406)
                      ++.|||++.-...+.     -..|.+.++.+.|+|.|.  +|+-.-.=+.+.|.|+++++..+.+-.       | +..|
T Consensus       226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~i  305 (344)
T KOG4532|consen  226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHI  305 (344)
T ss_pred             cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccc
Confidence            999999987654432     245889999999998763  455555567899999998876544321       2 2236


Q ss_pred             EEEEEeCCCCEEEEee
Q psy226          380 TSLDFHRAHPYVVTGS  395 (406)
Q Consensus       380 ~~l~~~~~~~~l~sgs  395 (406)
                      ..-.|+.++.-+-+.+
T Consensus       306 fgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  306 FGTNFNNENESNDVKN  321 (344)
T ss_pred             ccccccCCCccccccc
Confidence            6666766665444333

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.12  E-value=2.4e-07  Score=79.22  Aligned_cols=225  Identities=13%  Similarity=0.175  Sum_probs=137.0

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCC--cEEEEeccccc---CeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          112 VIFHPVFSLMASCSEDATIRLWDYETG--EYERALHGHLD---SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       112 v~~~p~~~~latgs~dg~v~vwd~~~~--~~~~~~~~h~~---~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      ++.+++|++||.- .|..|.|=...+.  ....+..-..+   .=+-++|+||+.+||.+...|+|+++|+....+ ..+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEc
Confidence            4667888888765 4666666544332  12222222222   345799999999999999999999999875332 232


Q ss_pred             ec-------CCcceEEEEEecCC------CEEEEEeCCCcEEEEEcCCC-----eEEEEee---cCCccEEEEEECCCCC
Q psy226          187 QG-------HDHNVTGVAFLPNS------DFVLSASRDKTIKMWEVATG-----YCVKTLT---GHREWVRQIKVSPDGT  245 (406)
Q Consensus       187 ~~-------h~~~v~~~~~~p~~------~~l~s~s~d~~i~iwd~~~~-----~~~~~~~---~~~~~v~~l~~~~~~~  245 (406)
                      ..       -...|.++.|.+..      ..|++-..+|.++=|-+..+     +...++.   .+...|.++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            21       23567788887532      24666678887777665322     2223332   2467899999999988


Q ss_pred             EEEEEeCCCe-----------EEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC
Q psy226          246 LLASCSNDHT-----------ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK  314 (406)
Q Consensus       246 ~l~s~~~d~~-----------v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  314 (406)
                      +|+.||....           +..|.+-+..+-                                     ...++...|+
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py-------------------------------------yk~v~~~~~~  203 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY-------------------------------------YKQVTSSEDD  203 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCc-------------------------------------EEEccccCcc
Confidence            8877764322           222222111110                                     0111222221


Q ss_pred             c------EEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc
Q psy226          315 T------IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH  375 (406)
Q Consensus       315 ~------i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h  375 (406)
                      .      -.+|.+-+.+.........+.|..+..||||..||+...+|.|.+|++.+-+..+++..+
T Consensus       204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            1      133333332222222234678999999999999999999999999999988777776544

>KOG3914|consensus

Probab=99.12  E-value=9.2e-10  Score=97.37  Aligned_cols=155  Identities=20%  Similarity=0.359  Sum_probs=104.1

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEE
Q psy226          238 IKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIK  317 (406)
Q Consensus       238 l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  317 (406)
                      +..+|.++++|.+..++...++++........+    ..+.++.-.|..    +....    ..........+++...+.
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl----~~~~~v~~~~~a----i~~~~----~~~sv~v~dkagD~~~~d  135 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKL----LDVSCVPKRPTA----ISFIR----EDTSVLVADKAGDVYSFD  135 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCccee----eeEeecccCcce----eeeee----ccceEEEEeecCCceeee
Confidence            456788899999988888888887654431111    112222211110    00000    000112223334445666


Q ss_pred             EEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee-ccccceEEEEEEeCCCCEEEEeeC
Q psy226          318 LWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL-EAHSHFVTSLDFHRAHPYVVTGSV  396 (406)
Q Consensus       318 lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l-~~h~~~v~~l~~~~~~~~l~sgs~  396 (406)
                      +|....+. ...+.||-+-++.|+|+||+++|+++..|..|||-.......+.++ -+|..+|..++.-++. .|+|||.
T Consensus       136 i~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sG  213 (390)
T KOG3914|consen  136 ILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSG  213 (390)
T ss_pred             eecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCC
Confidence            67666543 3456789999999999999999999999999999877666666665 5799999999997764 4899999


Q ss_pred             CCeEEEeecC
Q psy226          397 DKTVKVWECR  406 (406)
Q Consensus       397 Dg~v~iw~~~  406 (406)
                      |++|++||++
T Consensus       214 D~tlr~Wd~~  223 (390)
T KOG3914|consen  214 DKTLRLWDIT  223 (390)
T ss_pred             CCcEEEEecc
Confidence            9999999964

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.11  E-value=9.8e-07  Score=77.88  Aligned_cols=214  Identities=17%  Similarity=0.178  Sum_probs=140.6

Q ss_pred             eEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEe-cCCCEEEEEeCCCcEEEEEcCCCeEEEEeec
Q psy226          153 DIAFDQ-SGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFL-PNSDFVLSASRDKTIKMWEVATGYCVKTLTG  230 (406)
Q Consensus       153 ~l~~~~-~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  230 (406)
                      ++.|.+ ++.++++--..+.|..|+..+++.. .+....  ..++++. ++ ..++.+...+ +.++|..++........
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            577887 6667777667899999999887543 222222  6778888 55 5555555544 55669988865444432


Q ss_pred             -----CCccEEEEEECCCCCEEEEEeCC--------CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCC
Q psy226          231 -----HREWVRQIKVSPDGTLLASCSND--------HTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGR  297 (406)
Q Consensus       231 -----~~~~v~~l~~~~~~~~l~s~~~d--------~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  297 (406)
                           .....+.++++|+|++.++....        |.+..++.. ++ ...+.........++|+|+            
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~d------------  144 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPD------------  144 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETT------------
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCc------------
Confidence                 34567899999999988876654        457677766 33 2223333445678888884            


Q ss_pred             CCCCCCCCEE-EEEeCCCcEEEEECCC-Ce------EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc
Q psy226          298 PPGQGGGPYL-ATGSRDKTIKLWDVGS-GS------LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNM  369 (406)
Q Consensus       298 ~~~~~~~~~l-~s~~~d~~i~lwd~~~-~~------~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~  369 (406)
                            +..| ++-+..+.|..+++.. +.      ....+....+..-.++++++|+..++....+.|.++|.. ++.+
T Consensus       145 ------g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  145 ------GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL  217 (246)
T ss_dssp             ------SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred             ------chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence                  4444 4667778888888752 21      122223333357889999999998888889999999987 8877


Q ss_pred             eeeccccceEEEEEEe-CCCCEEE
Q psy226          370 KTLEAHSHFVTSLDFH-RAHPYVV  392 (406)
Q Consensus       370 ~~l~~h~~~v~~l~~~-~~~~~l~  392 (406)
                      ..+..-...+++++|. ++...|.
T Consensus       218 ~~i~~p~~~~t~~~fgg~~~~~L~  241 (246)
T PF08450_consen  218 REIELPVPRPTNCAFGGPDGKTLY  241 (246)
T ss_dssp             EEEE-SSSSEEEEEEESTTSSEEE
T ss_pred             EEEcCCCCCEEEEEEECCCCCEEE
Confidence            7776555579999994 5655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309|consensus

Probab=99.10  E-value=1.8e-09  Score=102.27  Aligned_cols=250  Identities=22%  Similarity=0.353  Sum_probs=160.4

Q ss_pred             eEEEEEcCCC--CEEEEEeCCCcEEEEEcCC---CcEEEEecccccCeeeEEECCCC-CEEEEEeCCCcEEEEeCCCCe-
Q psy226          109 VIKVIFHPVF--SLMASCSEDATIRLWDYET---GEYERALHGHLDSVQDIAFDQSG-KLLVSCSADMSLKLWDMSTYQ-  181 (406)
Q Consensus       109 V~~v~~~p~~--~~latgs~dg~v~vwd~~~---~~~~~~~~~h~~~V~~l~~~~~g-~~l~sgs~d~~i~vwd~~~~~-  181 (406)
                      |-.+.|+|..  .+-++......-.+|++..   ....-.++||+..|+++.|+|.. ..|++++.|-.+..||+.+.. 
T Consensus        70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~  149 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR  149 (1081)
T ss_pred             hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence            3344555432  2333333333445787643   34566789999999999999865 588999999999999998643 


Q ss_pred             EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC-eEEEEeecCCccEEEEEECCC-CCEEEEEeCCCeEEEE
Q psy226          182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSPD-GTLLASCSNDHTARVW  259 (406)
Q Consensus       182 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~d~~v~vw  259 (406)
                      .+.........-..++|+-....+++.+..+.|++||.+.| ..+..+++|...|+.++|+.- ...+.+++.|++|+.|
T Consensus       150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw  229 (1081)
T KOG0309|consen  150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW  229 (1081)
T ss_pred             ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence            34444444556677899876666666677788999999876 467788899999999888752 3468899999999999


Q ss_pred             eCCCccce-eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCcCE
Q psy226          260 SLATKETK-AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS-GSLLFTLIGHDNWV  337 (406)
Q Consensus       260 d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~-~~~~~~~~~h~~~v  337 (406)
                      |....... ........+|..-.+.|-...-.+       .+..++..+.---.++....|+..+ .+++++|.||++.|
T Consensus       230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~-------mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V  302 (1081)
T KOG0309|consen  230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI-------MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV  302 (1081)
T ss_pred             cccccccccceeccccCcceeccccccCceeEe-------ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence            98654321 111222334443344332110000       0011111111111233345566544 46899999999988


Q ss_pred             EEEEEcCCC----------CEEEEEeCCCeEEEEeCCC
Q psy226          338 RGVTFHPGG----------KYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       338 ~~l~~s~~g----------~~l~sgs~d~~i~vwd~~~  365 (406)
                      ...-|-..+          -.|++=|.|..+++|-+.+
T Consensus       303 ~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  303 LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            766664322          2589999999999997653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.09  E-value=1.7e-06  Score=76.27  Aligned_cols=273  Identities=14%  Similarity=0.180  Sum_probs=164.5

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCC--CcEEEEe--cccccCeeeEEECCCCCEEEEEeC-CCcEEEE
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSE---DATIRLWDYET--GEYERAL--HGHLDSVQDIAFDQSGKLLVSCSA-DMSLKLW  175 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~---dg~v~vwd~~~--~~~~~~~--~~h~~~V~~l~~~~~g~~l~sgs~-d~~i~vw  175 (406)
                      .+.+.++=++|+|+.+.|.++-.   +|.|..|.+..  |++...-  ..-..+-.-++++++|++|+++.. -|.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            45667788999999999988855   47788877664  6543221  111223377999999999999875 4789999


Q ss_pred             eCCC-CeEE--EEEecCCcc----------eEEEEEecCCCEEEEEeCC-CcEEEEEcCCCeEEEEee---cCCccEEEE
Q psy226          176 DMST-YQCL--KTMQGHDHN----------VTGVAFLPNSDFVLSASRD-KTIKMWEVATGYCVKTLT---GHREWVRQI  238 (406)
Q Consensus       176 d~~~-~~~~--~~~~~h~~~----------v~~~~~~p~~~~l~s~s~d-~~i~iwd~~~~~~~~~~~---~~~~~v~~l  238 (406)
                      -+.. |...  -.+..|...          +....|.|++++|++...- -.|.+|++..|.....-.   ....--+-|
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi  196 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI  196 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence            8854 3221  112234433          7889999999999987542 358899998775432211   223345779


Q ss_pred             EECCCCCEEEEEe-CCCeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC-CCc
Q psy226          239 KVSPDGTLLASCS-NDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR-DKT  315 (406)
Q Consensus       239 ~~~~~~~~l~s~~-~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~  315 (406)
                      .|+|++++....+ .+++|.+|..... .....++.       +...|..........  ......+|++|.++.+ ...
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~-------i~tlP~dF~g~~~~a--aIhis~dGrFLYasNRg~ds  267 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT-------IDTLPEDFTGTNWAA--AIHISPDGRFLYASNRGHDS  267 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee-------eccCccccCCCCcee--EEEECCCCCEEEEecCCCCe
Confidence            9999999886554 6999999998764 22222221       111221100000000  0001235788877654 236


Q ss_pred             EEEEECCC--CeEE--EEEeCCCcCEEEEEEcCCCCEEEEEeCC-CeEEEEeCC--CCccceeec-cccceEEEEEEe
Q psy226          316 IKLWDVGS--GSLL--FTLIGHDNWVRGVTFHPGGKYLVSCGDD-KTLRVWDTA--NKRNMKTLE-AHSHFVTSLDFH  385 (406)
Q Consensus       316 i~lwd~~~--~~~~--~~~~~h~~~v~~l~~s~~g~~l~sgs~d-~~i~vwd~~--~~~~~~~l~-~h~~~v~~l~~~  385 (406)
                      |-+|.+..  +++.  .....+....+.+.|+|+|++|+++..+ ..|.+|.+.  +++.-.... .......||.|.
T Consensus       268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         268 IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            77776643  3322  2223345567899999999999888754 468888654  444322211 223334566553

>KOG4532|consensus

Probab=99.08  E-value=6.1e-08  Score=81.62  Aligned_cols=235  Identities=11%  Similarity=0.032  Sum_probs=152.6

Q ss_pred             EEEEcCC-----CCEEEEEeCCCcEEEEEcCCCcE-EEEecccccCeeeEEE-CCCCCEEEEEeCCCcEEEEeCCCCeEE
Q psy226          111 KVIFHPV-----FSLMASCSEDATIRLWDYETGEY-ERALHGHLDSVQDIAF-DQSGKLLVSCSADMSLKLWDMSTYQCL  183 (406)
Q Consensus       111 ~v~~~p~-----~~~latgs~dg~v~vwd~~~~~~-~~~~~~h~~~V~~l~~-~~~g~~l~sgs~d~~i~vwd~~~~~~~  183 (406)
                      .+.|-|.     -.+||.|+..|...+|...+.+. .+....|...|+-+.= ....-.+..++.|.++++.+++.+...
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~  151 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK  151 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence            4556664     35899999999999999887653 3333344443332211 112235667889999999998754322


Q ss_pred             EEEecCCc--ceEEEEEecCCCEEEEEeCCCcEEEEEcCCC--eEEE-EeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Q psy226          184 KTMQGHDH--NVTGVAFLPNSDFVLSASRDKTIKMWEVATG--YCVK-TLTGHREWVRQIKVSPDGTLLASCSNDHTARV  258 (406)
Q Consensus       184 ~~~~~h~~--~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~--~~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~v  258 (406)
                      ..  .|..  .+.++++++++.++++.++...|..|.+...  ..+. ......+.--+..|+.....||++..||++.|
T Consensus       152 ~~--~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I  229 (344)
T KOG4532|consen  152 FA--VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI  229 (344)
T ss_pred             ce--eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence            22  2433  3789999999999999999999999988643  2233 22233333456788999999999999999999


Q ss_pred             EeCCCcccee-----EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe--
Q psy226          259 WSLATKETKA-----ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI--  331 (406)
Q Consensus       259 wd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~--  331 (406)
                      ||++......     .-..|.+.+..+.|+|...                -.+|+..-.-+.+.+-|+++++-...+.  
T Consensus       230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~----------------lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~  293 (344)
T KOG4532|consen  230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL----------------LDLLFISEHFSRVHVVDTRNYVNHQVIVIP  293 (344)
T ss_pred             EEecccccchhhhcccCCCCCCceEEEEecCCCc----------------ceEEEEecCcceEEEEEcccCceeeEEecC
Confidence            9998654322     2234788899999987421                2244444455678999999876543322  


Q ss_pred             -----CCC-cCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          332 -----GHD-NWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       332 -----~h~-~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                           .|. ..|..-.|+.++.-+.+.+++ .+.=|++.
T Consensus       294 ~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~  331 (344)
T KOG4532|consen  294 DDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNIL  331 (344)
T ss_pred             ccccccccccccccccccCCCcccccccch-hhheeecc
Confidence                 232 236667777776666655544 23345443

>KOG0882|consensus

Probab=99.07  E-value=3.2e-09  Score=95.26  Aligned_cols=253  Identities=16%  Similarity=0.250  Sum_probs=171.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC---CcEEEEecccccCeeeEEECCCCCEEEEEeC-CCcEEEEeCCCC
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYET---GEYERALHGHLDSVQDIAFDQSGKLLVSCSA-DMSLKLWDMSTY  180 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~---~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~-d~~i~vwd~~~~  180 (406)
                      |++.|+.+.-. -..++.+++.||.++.|--..   -++++-++.|...|.+++.+.+|.++.|++. |..++++|+++.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            77777766533 457899999999999997433   2455667789999999999999999999887 999999999875


Q ss_pred             eEEEEEecCCcceEEEEEecCCC---EE-EEEeCCCcEEEEEcCCCeE--EEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSD---FV-LSASRDKTIKMWEVATGYC--VKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~---~l-~s~s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      ..+.-++...-+=.+-.+...|.   .+ ++.-.++.+.++|-....|  ...-.-|..+|.++.+++-+..+++....|
T Consensus        87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g  166 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG  166 (558)
T ss_pred             chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence            54322221111111111122231   23 3345678999999765543  233346899999999999999999999999


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD  334 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~  334 (406)
                      .|..|....  .   ++...   ..+                                     .|.+....-++.+....
T Consensus       167 mVEyWs~e~--~---~qfPr---~~l-------------------------------------~~~~K~eTdLy~f~K~K  201 (558)
T KOG0882|consen  167 MVEYWSAEG--P---FQFPR---TNL-------------------------------------NFELKHETDLYGFPKAK  201 (558)
T ss_pred             eeEeecCCC--c---ccCcc---ccc-------------------------------------cccccccchhhcccccc
Confidence            999998653  1   11000   011                                     12333333334444456


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc--------------------------------ccc-eEEE
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA--------------------------------HSH-FVTS  381 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~--------------------------------h~~-~v~~  381 (406)
                      +..+++.|+|+|..+.+-+.|..|++++..+++.++.+..                                |.. .-+.
T Consensus       202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~  281 (558)
T KOG0882|consen  202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN  281 (558)
T ss_pred             cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence            6688999999999999999999999999998877665431                                111 1245


Q ss_pred             EEEeCCCCEEEEeeCCCeEEEee
Q psy226          382 LDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       382 l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      +.|...+++|+-|+.=| |++.+
T Consensus       282 ~~fdes~~flly~t~~g-ikvin  303 (558)
T KOG0882|consen  282 AVFDESGNFLLYGTILG-IKVIN  303 (558)
T ss_pred             eEEcCCCCEEEeeccee-EEEEE
Confidence            66888888888776554 44443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.06  E-value=7.7e-08  Score=87.85  Aligned_cols=253  Identities=16%  Similarity=0.217  Sum_probs=163.4

Q ss_pred             EEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC
Q psy226          132 LWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD  211 (406)
Q Consensus       132 vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d  211 (406)
                      +|...+......+..-.-++..+.|||.|.+|++.... .|.+|+-..+..+..+.  ...|.-+.|+|.+++|.+=++.
T Consensus        16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~   92 (561)
T COG5354          16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSRE   92 (561)
T ss_pred             eecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccC
Confidence            34444433333343345678899999999999987655 48999887765444443  3468999999999999986553


Q ss_pred             C---------------cEEEEEcCCCeEEEEeecCCcc--EE-EEEECCCCCEEEEEeCCCeEEEEeCCCccc-eeEEec
Q psy226          212 K---------------TIKMWEVATGYCVKTLTGHREW--VR-QIKVSPDGTLLASCSNDHTARVWSLATKET-KAELRG  272 (406)
Q Consensus       212 ~---------------~i~iwd~~~~~~~~~~~~~~~~--v~-~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~  272 (406)
                      .               .+.+||+.+|..+..+.+...+  .. -+.|+-+.++.|-. ....++|+++ +... ...+..
T Consensus        93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~  170 (561)
T COG5354          93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKN  170 (561)
T ss_pred             CccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhh
Confidence            3               4899999999999988776554  33 46777777776554 4457899986 3221 111111


Q ss_pred             C-CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE-----EeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCC
Q psy226          273 H-DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT-----GSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGG  346 (406)
Q Consensus       273 ~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-----~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g  346 (406)
                      . ...+....|+|..                ++..|+.     ...+.++++|.+..++.+.+..--.-.=..+.|++.|
T Consensus       171 lr~~gi~dFsisP~~----------------n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g  234 (561)
T COG5354         171 LRPVGILDFSISPEG----------------NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG  234 (561)
T ss_pred             ccccceeeEEecCCC----------------CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC
Confidence            1 2446666777742                1222222     3456789999998776654322111122467899999


Q ss_pred             CEEEEEe-----------CCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEe--eCCCeEEEeecC
Q psy226          347 KYLVSCG-----------DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG--SVDKTVKVWECR  406 (406)
Q Consensus       347 ~~l~sgs-----------~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sg--s~Dg~v~iw~~~  406 (406)
                      ++|..--           ....++++++. ++.+.......++|.+.+|.|.++.+++.  -.+-.+.++|++
T Consensus       235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr  306 (561)
T COG5354         235 KYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR  306 (561)
T ss_pred             ceEEEEEEEeeecccceeccceEEEEeec-ccccceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence            8875421           12457788876 33333333557889999999998876554  466677777764

>KOG2041|consensus

Probab=99.04  E-value=3.4e-08  Score=93.56  Aligned_cols=276  Identities=15%  Similarity=0.299  Sum_probs=181.3

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-c-ccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERAL-H-GHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~-~-~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      ..+|.||++.|..+.|+....-|-|...+|.|.||-+-.|.....+ . .....|.+++|+.+|..++..-.||.|.+=.
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            3468999999999999999999999999999999988777643222 1 2345789999999999999999999988876


Q ss_pred             CCCCeEE-EEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe-------EEEE----eecCCccEEEEEEC---
Q psy226          177 MSTYQCL-KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY-------CVKT----LTGHREWVRQIKVS---  241 (406)
Q Consensus       177 ~~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~-------~~~~----~~~~~~~v~~l~~~---  241 (406)
                      +...... +.+++.  -...+.|++|...++.+-..|.+.++|.....       |...    +......+..+.|.   
T Consensus       144 vdGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~  221 (1189)
T KOG2041|consen  144 VDGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP  221 (1189)
T ss_pred             eccceecchhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence            6543321 122221  23468899999988888889999999875432       1111    11112224445543   


Q ss_pred             -----CCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC--
Q psy226          242 -----PDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK--  314 (406)
Q Consensus       242 -----~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--  314 (406)
                           |+...|+.|-..|.+.+-.-.+......+. ..-.+....|++                  +|.+|+.++.|.  
T Consensus       222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh------------------~G~vLAvcG~~~da  282 (1189)
T KOG2041|consen  222 YQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNH------------------NGAVLAVCGNDSDA  282 (1189)
T ss_pred             cccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecC------------------CCcEEEEccCcccc
Confidence                 467789999999988876543322222221 224566778887                  467788877642  


Q ss_pred             -------cEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEE----------------------------
Q psy226          315 -------TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR----------------------------  359 (406)
Q Consensus       315 -------~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~----------------------------  359 (406)
                             .|.+|.. -|..+.+++-....|++++|-..|-.++.+- |+.|+                            
T Consensus       283 ~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~  360 (1189)
T KOG2041|consen  283 DEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQ  360 (1189)
T ss_pred             cCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcc
Confidence                   4555543 4666777777777899999977665555432 34443                            


Q ss_pred             ----EEeCCCCcc-ceeeccccceEEEEEEeCCCCEEEEeeCCCeEE
Q psy226          360 ----VWDTANKRN-MKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVK  401 (406)
Q Consensus       360 ----vwd~~~~~~-~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~  401 (406)
                          +||..+.+. +++.   . ...+++|..+...|++-..||.+.
T Consensus       361 y~i~Fwdtk~nek~vK~V---~-~~~~~a~~~ehCvL~~~~d~~~i~  403 (1189)
T KOG2041|consen  361 YGIMFWDTKTNEKTVKTV---T-HFENMAFYREHCVLINRQDDGVIP  403 (1189)
T ss_pred             eEEEEEecccChhhhhhh---c-ceeehheecccEEEEeccccCCCc
Confidence                444433221 1111   1 235677777777787777777654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.03  E-value=5.1e-07  Score=81.97  Aligned_cols=147  Identities=18%  Similarity=0.240  Sum_probs=115.9

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDA-TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg-~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~  181 (406)
                      .+|...|.-..+..+.+-++.|..|| .+-|+|..+++..+ +...-+.|.++..+++|++++.+.....+-+.|++++.
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn  434 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN  434 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence            46777888888888888999999999 89999999987544 55567889999999999999998888888888999987


Q ss_pred             EEEEEecCCcceEEEEEecCCCEEEEEeCCC----cEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe
Q psy226          182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDK----TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       182 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~----~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                      ....-+...+-|+...|+|+++.++-+--+|    .|+++|+.+++... .......=.+-+|+|++++|.--+
T Consensus       435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE-ecCCcccccCcccCCCCcEEEEEe
Confidence            6555555667899999999999999876665    68999998876433 233333334567899999875543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.03  E-value=3.2e-07  Score=86.94  Aligned_cols=260  Identities=12%  Similarity=0.022  Sum_probs=158.1

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEE-E
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTG-V  196 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~-~  196 (406)
                      +..++.++.+|.+.-+|..+|+.............+...  .+..++.+..++.+.-+|..+++.+.........+.. .
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            456777888999999999999876655432211111111  2456777888999999999999887666432111100 0


Q ss_pred             EEec--CCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCc-------cEEEEEECC--CCCEEEEEeCCCeEEEEeCCCcc
Q psy226          197 AFLP--NSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE-------WVRQIKVSP--DGTLLASCSNDHTARVWSLATKE  265 (406)
Q Consensus       197 ~~~p--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-------~v~~l~~~~--~~~~l~s~~~d~~v~vwd~~~~~  265 (406)
                      .-+|  .+..++.++.++.+...|..+|..+........       ....+..+|  .+..++.++.+|.+..+|..+++
T Consensus       198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~  277 (394)
T PRK11138        198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ  277 (394)
T ss_pred             CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence            0111  234577788899999999998876554321100       001111122  24567777789999999998876


Q ss_pred             ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc-CEEEEEEcC
Q psy226          266 TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN-WVRGVTFHP  344 (406)
Q Consensus       266 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~-~v~~l~~s~  344 (406)
                      .+-....  .....    |                ...+..++.++.++.+..+|..+|+.+-....-.. ...+...  
T Consensus       278 ~~W~~~~--~~~~~----~----------------~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--  333 (394)
T PRK11138        278 IVWKREY--GSVND----F----------------AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--  333 (394)
T ss_pred             EEEeecC--CCccC----c----------------EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--
Confidence            5422210  00000    0                01245677788899999999999987654322111 1111122  


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCccceeeccccceEE-EEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          345 GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVT-SLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       345 ~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~-~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .+.+|+.++.||.|++.|..+++.+...+.....+. ...+  .+..|..++.||.|..++.
T Consensus       334 ~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        334 YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            256788899999999999999988766554322222 2222  2346778899999988764

>KOG4714|consensus

Probab=99.02  E-value=5.7e-09  Score=87.32  Aligned_cols=161  Identities=14%  Similarity=0.193  Sum_probs=104.9

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE-EEEecc-cccCeeeEEECCCCCEEEEEeC-----CCcEEE
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY-ERALHG-HLDSVQDIAFDQSGKLLVSCSA-----DMSLKL  174 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~-~~~~~~-h~~~V~~l~~~~~g~~l~sgs~-----d~~i~v  174 (406)
                      +..|..|=.+-+.+-.++-++++..||.+.+++.+.-.. ...+.. |.+. .+.++...++.+.++..     -+..+.
T Consensus        85 ~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a  163 (319)
T KOG4714|consen   85 LAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYA  163 (319)
T ss_pred             eeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceee
Confidence            445666555555666678899999999999998765211 111111 1111 12233344555555432     234556


Q ss_pred             EeCCCCeEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCe-EEEEeecCCccEEEEEECC-CCCEEEEEe
Q psy226          175 WDMSTYQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGY-CVKTLTGHREWVRQIKVSP-DGTLLASCS  251 (406)
Q Consensus       175 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~-~~~~l~s~~  251 (406)
                      |++...+.+..-..-...|.+++-+|..+ .+++|+.||.+-+||.+... ....+..|...+..+-|+| ++..|++++
T Consensus       164 ~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s  243 (319)
T KOG4714|consen  164 NTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS  243 (319)
T ss_pred             ecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec
Confidence            66543222111111223488999999654 66778899999999998763 3345678999999999999 678999999


Q ss_pred             CCCeEEEEeCCC
Q psy226          252 NDHTARVWSLAT  263 (406)
Q Consensus       252 ~d~~v~vwd~~~  263 (406)
                      +||.+-.||-.+
T Consensus       244 edGslw~wdas~  255 (319)
T KOG4714|consen  244 EDGSLWHWDAST  255 (319)
T ss_pred             CCCcEEEEcCCC
Confidence            999999999764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.01  E-value=2.2e-07  Score=87.62  Aligned_cols=217  Identities=15%  Similarity=0.068  Sum_probs=135.1

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCe-----eeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC--
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHLDSV-----QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHD--  190 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V-----~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~--  190 (406)
                      +..++.++.+|.|..||..+|+...........+     .+....  +..++.+..++.+..+|..+++.+.......  
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            3456667778889999988888765554322211     111111  2467788888999999999887654432110  


Q ss_pred             --cce---EEEEEec--CCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy226          191 --HNV---TGVAFLP--NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT  263 (406)
Q Consensus       191 --~~v---~~~~~~p--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~  263 (406)
                        ..+   ..+.-.|  .++.++.++.++.+..||..+|+.+...... . .....  ..+..++.++.||.+..+|..+
T Consensus       223 g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-~-~~~p~--~~~~~vyv~~~~G~l~~~d~~t  298 (377)
T TIGR03300       223 GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-S-YQGPA--VDDNRLYVTDADGVVVALDRRS  298 (377)
T ss_pred             CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC-C-ccCce--EeCCEEEEECCCCeEEEEECCC
Confidence              000   0000011  3567888889999999999999876655421 1 11111  2466788888999999999988


Q ss_pred             ccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEE-EEEE
Q psy226          264 KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVR-GVTF  342 (406)
Q Consensus       264 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~-~l~~  342 (406)
                      ++.+-.........   ..+|                ...+..+++++.+|.|.++|..+|+.+..+..+...+. .-.+
T Consensus       299 G~~~W~~~~~~~~~---~ssp----------------~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~  359 (377)
T TIGR03300       299 GSELWKNDELKYRQ---LTAP----------------AVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVV  359 (377)
T ss_pred             CcEEEccccccCCc---cccC----------------EEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEE
Confidence            76543321110000   0001                00245788999999999999999999988876554322 2222


Q ss_pred             cCCCCEEEEEeCCCeEEEE
Q psy226          343 HPGGKYLVSCGDDKTLRVW  361 (406)
Q Consensus       343 s~~g~~l~sgs~d~~i~vw  361 (406)
                      . + ..|+.++.||.|+.|
T Consensus       360 ~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       360 V-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             E-C-CEEEEEeCCceEEEe
Confidence            2 3 458889999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=1.1e-06  Score=83.18  Aligned_cols=191  Identities=10%  Similarity=-0.005  Sum_probs=116.6

Q ss_pred             CeeeEEECCCCCE-EEEEeCC---CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEE-EeCC--CcEEEEEcCCC
Q psy226          150 SVQDIAFDQSGKL-LVSCSAD---MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLS-ASRD--KTIKMWEVATG  222 (406)
Q Consensus       150 ~V~~l~~~~~g~~-l~sgs~d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s-~s~d--~~i~iwd~~~~  222 (406)
                      .+..-.|+|+|+. ++..+.+   ..|.++|+.+++..... ..........|+|||+.++. .+.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6778999999984 6644443   46888899887654333 34455667889999986654 4334  46778888777


Q ss_pred             eEEEEeecCCccEEEEEECCCCCEEEEEeC-CC--eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCC
Q psy226          223 YCVKTLTGHREWVRQIKVSPDGTLLASCSN-DH--TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPP  299 (406)
Q Consensus       223 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  299 (406)
                      .. ..+..+........|+|||+.|+-.+. .+  .|.+.|+.+++....... ..  ....|+|+              
T Consensus       268 ~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPD--------------  329 (419)
T PRK04043        268 TL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTY--------------  329 (419)
T ss_pred             cE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCC--------------
Confidence            64 334444433345679999998776653 33  577778776554332211 11  11366663              


Q ss_pred             CCCCCCEEEEEeCC---------CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCC
Q psy226          300 GQGGGPYLATGSRD---------KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDD-K--TLRVWDTAN  365 (406)
Q Consensus       300 ~~~~~~~l~s~~~d---------~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d-~--~i~vwd~~~  365 (406)
                          |.+++..+..         ..|.+.|+.++.. ..+... .......|+|||+.|+-.+.+ +  .+.+.++..
T Consensus       330 ----G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        330 ----KNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             ----CCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence                5555544433         3688889877764 333322 223357899999987654432 2  355666643

>KOG1832|consensus

Probab=99.00  E-value=3.2e-10  Score=109.20  Aligned_cols=257  Identities=18%  Similarity=0.274  Sum_probs=172.5

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCC--cEEEEeCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADM--SLKLWDMS  178 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~--~i~vwd~~  178 (406)
                      .+..|+..-+|++|+-..++|+.|+-.|.|+++++.+|..+....+|..+|+-+.-+.+|..+++.+.-.  ...+|++.
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            3556888899999999999999999999999999999999999999999999999999998777655432  46789986


Q ss_pred             C-CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ec---CCccEEEEEECCCCCEEEEEeCC
Q psy226          179 T-YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL-TG---HREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       179 ~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~---~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                      + +...+++.    .-.++.|+.....-+.|..-....+||+.|+..+.++ .+   .+..-++..|+|+..+++   +|
T Consensus      1176 s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---nd 1248 (1516)
T KOG1832|consen 1176 STGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---ND 1248 (1516)
T ss_pred             cccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eC
Confidence            4 33333433    3456788765444344444456789999998766653 22   122336788999988775   56


Q ss_pred             CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC
Q psy226          254 HTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH  333 (406)
Q Consensus       254 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h  333 (406)
                      |.  +||++..+.++.+..... .-.-.|+|                  +|..++..+     -|||+++.+.++....-
T Consensus      1249 Gv--LWDvR~~~aIh~FD~ft~-~~~G~FHP------------------~g~eVIINS-----EIwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1249 GV--LWDVRIPEAIHRFDQFTD-YGGGGFHP------------------SGNEVIINS-----EIWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred             ce--eeeeccHHHHhhhhhhee-cccccccC------------------CCceEEeec-----hhhhhHHHHHHhcCccc
Confidence            64  699998776655543321 11223444                  355555544     58999998888776543


Q ss_pred             CcCEEEEEEcCCCCEEEEEe--C----C-----------CeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEE
Q psy226          334 DNWVRGVTFHPGGKYLVSCG--D----D-----------KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVT  393 (406)
Q Consensus       334 ~~~v~~l~~s~~g~~l~sgs--~----d-----------~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s  393 (406)
                      .  -+.|.|+..|..+...-  .    |           ...|-+|..+...+.++... ..|.+++-.|..++|+.
T Consensus      1303 d--qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~-R~~~Dlct~~~D~~l~v 1376 (1516)
T KOG1832|consen 1303 D--QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD-RCLLDLCTEPTDSFLGV 1376 (1516)
T ss_pred             c--ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc-cchhhhhcCCccceEEE
Confidence            3  35678888887665432  0    0           11233333334445555432 35667777777777765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.97  E-value=1.3e-06  Score=76.65  Aligned_cols=214  Identities=15%  Similarity=0.072  Sum_probs=135.0

Q ss_pred             CCcEEEEeCCCCeEEEEEecCCcceEEEE--EecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCE
Q psy226          169 DMSLKLWDMSTYQCLKTMQGHDHNVTGVA--FLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL  246 (406)
Q Consensus       169 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~--~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~  246 (406)
                      +|+|..||..+++.+....--. .+....  ..++++.+++++.++.+..||..+|+.+..+..........  ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee--eecccc
Confidence            6889999999999887765311 121112  33467788888999999999999999887776422111111  123556


Q ss_pred             EEEEeCCCeEEEEeCCCccceeEE-ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe
Q psy226          247 LASCSNDHTARVWSLATKETKAEL-RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS  325 (406)
Q Consensus       247 l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~  325 (406)
                      ++.++.|+.++.+|..+++.+-.. .....         ......      .......+..++.+..++.|..+|+.+|+
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~---------~~~~~~------~~~~~~~~~~~~~~~~~g~l~~~d~~tG~  143 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSP---------PAGVRS------SSSPAVDGDRLYVGTSSGKLVALDPKTGK  143 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSC---------TCSTB--------SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred             cccccceeeeEecccCCcceeeeecccccc---------cccccc------ccCceEecCEEEEEeccCcEEEEecCCCc
Confidence            677778889999999888876552 22110         000000      00000025578888889999999999999


Q ss_pred             EEEEEeCCCcC-----------EEEEEEcCCCCEEEEEeCCCe-EEEEeCCCCccceeeccccceEEEEEEeCCCCEEEE
Q psy226          326 LLFTLIGHDNW-----------VRGVTFHPGGKYLVSCGDDKT-LRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVT  393 (406)
Q Consensus       326 ~~~~~~~h~~~-----------v~~l~~s~~g~~l~sgs~d~~-i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s  393 (406)
                      .+.........           ...+.+. ++ .++.++.++. +.+ |..+++.+-...  ...+.. ....++..|+.
T Consensus       144 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~  217 (238)
T PF13360_consen  144 LLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-LPSVDGGTLYV  217 (238)
T ss_dssp             EEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE-CEECCCTEEEE
T ss_pred             EEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC-CceeeCCEEEE
Confidence            98877654322           1233333 44 6777777775 555 999987543222  122222 14567788888


Q ss_pred             eeCCCeEEEeecC
Q psy226          394 GSVDKTVKVWECR  406 (406)
Q Consensus       394 gs~Dg~v~iw~~~  406 (406)
                      ++.|+.|..||++
T Consensus       218 ~~~~~~l~~~d~~  230 (238)
T PF13360_consen  218 TSSDGRLYALDLK  230 (238)
T ss_dssp             EETTTEEEEEETT
T ss_pred             EeCCCEEEEEECC
Confidence            8899999999974

...

>KOG1275|consensus

Probab=98.97  E-value=2.9e-08  Score=96.46  Aligned_cols=182  Identities=14%  Similarity=0.201  Sum_probs=137.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEE
Q psy226          159 SGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI  238 (406)
Q Consensus       159 ~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l  238 (406)
                      ++..++.|+-...+..+|+.+.+..+...-....|.-++.  +++++.+|...|+|.+-|.++.+.++++..|++.|.. 
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD-  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD-  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee-
Confidence            3456777777777888899888776665544445555554  6789999999999999999999999999999998876 


Q ss_pred             EECCCCCEEEEEeC---------CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE
Q psy226          239 KVSPDGTLLASCSN---------DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT  309 (406)
Q Consensus       239 ~~~~~~~~l~s~~~---------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  309 (406)
                       |+-.|++|++||.         |.-|+|||++..+.+..+.-+..+ .-+.|.|..                 ...+++
T Consensus       223 -fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl-----------------~t~~~V  283 (1118)
T KOG1275|consen  223 -FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSL-----------------TTRLAV  283 (1118)
T ss_pred             -eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccc-----------------cceEEE
Confidence             4557999999985         456889999987666555444333 334555532                 235888


Q ss_pred             EeCCCcEEEEE---CCCC-eEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy226          310 GSRDKTIKLWD---VGSG-SLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD  362 (406)
Q Consensus       310 ~~~d~~i~lwd---~~~~-~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd  362 (406)
                      ++..|+..+-|   +.+. ..+..+....+.+..+++|++|+.++.|..+|.|.+|-
T Consensus       284 ~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  284 TSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            88899999988   3333 22344444566799999999999999999999999996

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=1.2e-06  Score=82.94  Aligned_cols=170  Identities=12%  Similarity=0.065  Sum_probs=107.6

Q ss_pred             CeEEEEEcCCCCE-EEEEeCC---CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEE-EeCC--CcEEEEeCCCC
Q psy226          108 PVIKVIFHPVFSL-MASCSED---ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVS-CSAD--MSLKLWDMSTY  180 (406)
Q Consensus       108 ~V~~v~~~p~~~~-latgs~d---g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~s-gs~d--~~i~vwd~~~~  180 (406)
                      ++..-.|+|+++. ++..+.+   ..|.++|+.+++...... ..+......|+|||+.|+. .+.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6778999999984 6644443   568889999887655443 4455667889999987664 3333  46777788777


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeC-CC--cEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCC----
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASR-DK--TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSND----  253 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d----  253 (406)
                      +. ..+..+........|+|||+.|+..+. .+  .|.+.|+.++...+.... ...  ...|+|+|+.++..+..    
T Consensus       268 ~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~  343 (419)
T PRK04043        268 TL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNE  343 (419)
T ss_pred             cE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcc
Confidence            64 334333333345689999987766553 33  577888887765333221 112  24899999988776653    


Q ss_pred             -----CeEEEEeCCCccceeEEecCCceEEEEEeCC
Q psy226          254 -----HTARVWSLATKETKAELRGHDHTVECVAWAP  284 (406)
Q Consensus       254 -----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  284 (406)
                           ..|.+.|+.++... .+... .......|+|
T Consensus       344 ~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SP  377 (419)
T PRK04043        344 FGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSS  377 (419)
T ss_pred             cCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECC
Confidence                 25777787766532 23222 1222455666

>KOG4714|consensus

Probab=98.94  E-value=2.4e-08  Score=83.62  Aligned_cols=196  Identities=14%  Similarity=0.143  Sum_probs=116.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE------------EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYETGEYE------------RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~------------~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      |..+.|.-+ -.|+++..++.+......++...            +.+..|.++-.+=+.+-.++.++++..||.+.+++
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            444445433 45677777777766654443322            22223333333333344567899999999999998


Q ss_pred             CCCCeE-EEEEe-cCCcceEEEEEecCCCEEEEEeC-----CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCC-CEEE
Q psy226          177 MSTYQC-LKTMQ-GHDHNVTGVAFLPNSDFVLSASR-----DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG-TLLA  248 (406)
Q Consensus       177 ~~~~~~-~~~~~-~h~~~v~~~~~~p~~~~l~s~s~-----d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~  248 (406)
                      .+.-.. .+... .|.+ -.+.++...++.+.++.-     -+..+.|+++.......-....+.|.+++-+|.. ++++
T Consensus       118 ~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~  196 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC  196 (319)
T ss_pred             chHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence            764111 11111 1211 122233334444444321     1234455554322111111112338888888855 4567


Q ss_pred             EEeCCCeEEEEeCCCcc-ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q psy226          249 SCSNDHTARVWSLATKE-TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS  323 (406)
Q Consensus       249 s~~~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~  323 (406)
                      .|+.||.+-+||.+... +...+..|+.++..+-|+|.                 ++..|+++++||.+.-||..+
T Consensus       197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk-----------------~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK-----------------NPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC-----------------CchheeEecCCCcEEEEcCCC
Confidence            78889999999998753 44567789999999999985                 466799999999999999764

>KOG1832|consensus

Probab=98.92  E-value=8.1e-10  Score=106.53  Aligned_cols=215  Identities=16%  Similarity=0.249  Sum_probs=152.8

Q ss_pred             EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCC--cEEEEEc
Q psy226          142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK--TIKMWEV  219 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~--~i~iwd~  219 (406)
                      +.++.|+...+|++|+.+.++|+.|+..|.|+++++.+|.......+|..+|+-+.-+.+|..+++.+.-.  -..+|+.
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            45677888899999999999999999999999999999998889999999999999888998776654432  4678998


Q ss_pred             CC-CeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEE-ec---CCceEEEEEeCCCCCccccccc
Q psy226          220 AT-GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL-RG---HDHTVECVAWAPGVASESISEA  294 (406)
Q Consensus       220 ~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~~~~~~~  294 (406)
                      .. +...+++.+    -.++.|+.....-+.|.......+||+.+..+..++ .+   ....-.+..|+|.         
T Consensus      1175 ~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~--------- 1241 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC--------- 1241 (1516)
T ss_pred             ccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCC---------
Confidence            54 444455543    345777766544455555677899999988776552 21   1112234455552         


Q ss_pred             cCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc
Q psy226          295 AGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA  374 (406)
Q Consensus       295 ~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~  374 (406)
                               ...++   +||  .+||.+..+.++.|......+. -.|+|+|..++..+     -|||+++.+.+++...
T Consensus      1242 ---------D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1242 ---------DTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS 1301 (1516)
T ss_pred             ---------cceEe---eCc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeec-----hhhhhHHHHHHhcCcc
Confidence                     22222   355  5799998887777765443332 36999999998877     4899999888776654


Q ss_pred             ccceEEEEEEeCCCCEE
Q psy226          375 HSHFVTSLDFHRAHPYV  391 (406)
Q Consensus       375 h~~~v~~l~~~~~~~~l  391 (406)
                      -..  ..+.|+..|..+
T Consensus      1302 Ldq--c~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1302 LDQ--CAVTFNSTGDVM 1316 (1516)
T ss_pred             ccc--eEEEeccCccch
Confidence            332  366788877654

>KOG1912|consensus

Probab=98.92  E-value=2.2e-07  Score=88.99  Aligned_cols=255  Identities=14%  Similarity=0.115  Sum_probs=167.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCC------------CEEEEEeCCCcEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG------------KLLVSCSADMSLKL  174 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g------------~~l~sgs~d~~i~v  174 (406)
                      ..-.++.|+|.| ++|-|+ ...|.|-|..+-+.+..+.-|...|+.+.|.|-.            -+||++...|.|.+
T Consensus        16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             ccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            335678898876 555554 3578899999988899999999999999997631            25667777799999


Q ss_pred             EeCCCCeEEEEEecCCcceEEEEEecC---C-CEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC-CCCEEEE
Q psy226          175 WDMSTYQCLKTMQGHDHNVTGVAFLPN---S-DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLAS  249 (406)
Q Consensus       175 wd~~~~~~~~~~~~h~~~v~~~~~~p~---~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s  249 (406)
                      ||......+..+..|.+++..++|-|.   . +.|++-....++.+|+..+|..............|+.++| |.++|..
T Consensus        94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~  173 (1062)
T KOG1912|consen   94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV  173 (1062)
T ss_pred             EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence            999988777788889999999999874   3 4677777788999999999998887766666777899998 6677777


Q ss_pred             EeCCCeEEEEeCCC-ccceeEEecCCceEEEEEeCC---------------CCCccccccccCCCCCCCCCCEEEEEeCC
Q psy226          250 CSNDHTARVWSLAT-KETKAELRGHDHTVECVAWAP---------------GVASESISEAAGRPPGQGGGPYLATGSRD  313 (406)
Q Consensus       250 ~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  313 (406)
                      -+..|.+.+-+.-. .++-  ..+|...|.+-.-.+               ...+..+..........+.-+.++-....
T Consensus       174 l~s~g~vl~~~~l~~sep~--~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p  251 (1062)
T KOG1912|consen  174 LGSKGFVLSCKDLGLSEPD--VPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP  251 (1062)
T ss_pred             EccCceEEEEeccCCCCCC--CCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence            77777777766432 1110  011111111100000               00000000000000001111112223345


Q ss_pred             CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCC
Q psy226          314 KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGG--KYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       314 ~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g--~~l~sgs~d~~i~vwd~~~  365 (406)
                      ..+.++|+.-..++....-..+.+.-+.+-|++  ..|+++-.||.+.+|-.+.
T Consensus       252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            668999998877777665455555566666655  5799999999999996543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.91  E-value=6.4e-09  Score=62.92  Aligned_cols=39  Identities=36%  Similarity=0.759  Sum_probs=36.9

Q ss_pred             CeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy226          324 GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD  362 (406)
Q Consensus       324 ~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd  362 (406)
                      ++++.++.+|.+.|++++|+|++.+|++|+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.89  E-value=1.9e-06  Score=78.30  Aligned_cols=210  Identities=17%  Similarity=0.239  Sum_probs=144.7

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEecc---c---c-----cCeeeEE-ECC-CCCEEEEEeCCCcEEEEeCCCCeEE
Q psy226          117 VFSLMASCSEDATIRLWDYETGEYERALHG---H---L-----DSVQDIA-FDQ-SGKLLVSCSADMSLKLWDMSTYQCL  183 (406)
Q Consensus       117 ~~~~latgs~dg~v~vwd~~~~~~~~~~~~---h---~-----~~V~~l~-~~~-~g~~l~sgs~d~~i~vwd~~~~~~~  183 (406)
                      ||+.++- +..|.|.+||-.+.++.+.--+   .   .     .+..-+. |++ +|.+++..|. |.+.+.+...+-.+
T Consensus       277 DGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i  354 (668)
T COG4946         277 DGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI  354 (668)
T ss_pred             CCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE
Confidence            4544432 3457799999887665432111   1   0     0111111 333 5788888876 55666665444333


Q ss_pred             EEEecCCcceEEEEEecCCCEEEEEeCCC-cEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy226          184 KTMQGHDHNVTGVAFLPNSDFVLSASRDK-TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       184 ~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~  262 (406)
                      +  .+|...|.-..+..+++-++.|..|| .+-++|..+++ ++.+.+.-+.|.++..+|+|+.++.+.....+-+.|+.
T Consensus       355 q--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         355 Q--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             E--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            2  36777788888888888889999999 89999998875 45566677789999999999999999888899999999


Q ss_pred             CccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC----cEEEEECCCCeEEEEEeCCCcCEE
Q psy226          263 TKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK----TIKLWDVGSGSLLFTLIGHDNWVR  338 (406)
Q Consensus       263 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~lwd~~~~~~~~~~~~h~~~v~  338 (406)
                      ++.....-+....-|....|+|                  ++.++|-+-.+|    .|+++|+..++.... ......=.
T Consensus       432 ngnv~~idkS~~~lItdf~~~~------------------nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-TT~ta~Df  492 (668)
T COG4946         432 NGNVRLIDKSEYGLITDFDWHP------------------NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-TTPTAYDF  492 (668)
T ss_pred             CCCeeEecccccceeEEEEEcC------------------CceeEEEecCcceeeeeEEEEecCCCeEEEe-cCCccccc
Confidence            9887666666677899999998                  466777776665    699999988775432 22222223


Q ss_pred             EEEEcCCCCEEE
Q psy226          339 GVTFHPGGKYLV  350 (406)
Q Consensus       339 ~l~~s~~g~~l~  350 (406)
                      +=+|.|+|++|.
T Consensus       493 sPaFD~d~ryLY  504 (668)
T COG4946         493 SPAFDPDGRYLY  504 (668)
T ss_pred             CcccCCCCcEEE
Confidence            446778887764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.86  E-value=6.5e-09  Score=62.89  Aligned_cols=38  Identities=26%  Similarity=0.636  Sum_probs=36.1

Q ss_pred             ccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          367 RNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       367 ~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      +++.++.+|.+.|++|+|+|++.+|+||+.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695|consensus

Probab=98.85  E-value=1.4e-08  Score=88.39  Aligned_cols=147  Identities=20%  Similarity=0.331  Sum_probs=112.5

Q ss_pred             EEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC-----eEEEEEecCCcceEEE
Q psy226          122 ASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY-----QCLKTMQGHDHNVTGV  196 (406)
Q Consensus       122 atgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~-----~~~~~~~~h~~~v~~~  196 (406)
                      ++.+.+-.|-+-|+++|... .+. -...|.++.|...++++..|+..|.|...|+...     .+...+ -|...|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence            44555666777777776422 222 4567889999999999999999999999999743     233333 488999999


Q ss_pred             EEec-CCCEEEEEeCCCcEEEEEcCCCeE---EEEeecCCccEE--EEEECCCCCEEEEEeCCCeEEEEeCCCccceeEE
Q psy226          197 AFLP-NSDFVLSASRDKTIKMWEVATGYC---VKTLTGHREWVR--QIKVSPDGTLLASCSNDHTARVWSLATKETKAEL  270 (406)
Q Consensus       197 ~~~p-~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~v~--~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  270 (406)
                      .... ++.+|.+.+.+|+|++||.+--++   +.++.||...-.  -+.+.+....+++++.|-..|+|.++.+....++
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence            8877 678899999999999999987666   888889855332  2345667778999999999999999987766655


Q ss_pred             e
Q psy226          271 R  271 (406)
Q Consensus       271 ~  271 (406)
                      .
T Consensus       385 p  385 (425)
T KOG2695|consen  385 P  385 (425)
T ss_pred             C
Confidence            4

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.84  E-value=3e-06  Score=80.33  Aligned_cols=267  Identities=9%  Similarity=0.058  Sum_probs=155.4

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccc--c--------Cee-eEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHL--D--------SVQ-DIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~--~--------~V~-~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      +..+++++.+|.|.-+|..+|+..-......  .        .+. .+..  .+..++.++.++.+..+|..+++.+...
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            5677888889999999999998765543211  0        000 1111  3557778889999999999999877665


Q ss_pred             ecCCcceEE-EEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEE-EEEECC--CCCEEEEEeCCCeEEEEeCC
Q psy226          187 QGHDHNVTG-VAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVR-QIKVSP--DGTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       187 ~~h~~~v~~-~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~-~l~~~~--~~~~l~s~~~d~~v~vwd~~  262 (406)
                      .... .+.+ ...  .+..++.++.++.+..+|..+|+.+........... ...-+|  .+..++.++.++.+..+|..
T Consensus       147 ~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~  223 (394)
T PRK11138        147 KVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME  223 (394)
T ss_pred             cCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence            4332 2221 112  245677788899999999999988877653211100 000111  12356667788999999988


Q ss_pred             CccceeEEecCCce-EEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEE
Q psy226          263 TKETKAELRGHDHT-VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT  341 (406)
Q Consensus       263 ~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~  341 (406)
                      +++..-........ ...+        .........|.  -.+..++.++.++.+..+|..+|+.+-...-.  ....+.
T Consensus       224 ~G~~~W~~~~~~~~~~~~~--------~~~~~~~~sP~--v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~  291 (394)
T PRK11138        224 QGQLIWQQRISQPTGATEI--------DRLVDVDTTPV--VVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA  291 (394)
T ss_pred             CChhhheeccccCCCccch--------hcccccCCCcE--EECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE
Confidence            77654322110000 0000        00000000010  02345777788999999999999877554311  111122


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc-cceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          342 FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH-SHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       342 ~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h-~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                        ..+..|+.++.+|.+..+|..+++.+-....- .....+...  .+.+|..++.||.+...|.
T Consensus       292 --~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        292 --VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             --EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence              24567788889999999999888654222110 111122222  2456777888888877764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.81  E-value=1.5e-06  Score=74.34  Aligned_cols=160  Identities=18%  Similarity=0.301  Sum_probs=108.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc-c------ccCeeeEEECCC------CCEEEEEeCCCcEEEEe
Q psy226          110 IKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHG-H------LDSVQDIAFDQS------GKLLVSCSADMSLKLWD  176 (406)
Q Consensus       110 ~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~-h------~~~V~~l~~~~~------g~~l~sgs~d~~i~vwd  176 (406)
                      ..++|+||+.+||.+...|+|+++|+....+- .+.. +      ...|..+.|.+.      ...|++-..+|.++-|-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            36899999999999999999999998864432 2221 1      245666777442      22455666777777665


Q ss_pred             CC-----CCeEEEEEec---CCcceEEEEEecCCCEEEEEeCC-----------CcEEEEEcCCCeEE------------
Q psy226          177 MS-----TYQCLKTMQG---HDHNVTGVAFLPNSDFVLSASRD-----------KTIKMWEVATGYCV------------  225 (406)
Q Consensus       177 ~~-----~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~s~d-----------~~i~iwd~~~~~~~------------  225 (406)
                      +.     .++..+++..   +...|.++.|+|..++|+.|+..           .-+.-|.+-++..-            
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~  205 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT  205 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence            42     3344444433   46689999999998888776532           12555655322110            


Q ss_pred             --------------EEe---ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEE
Q psy226          226 --------------KTL---TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL  270 (406)
Q Consensus       226 --------------~~~---~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  270 (406)
                                    +.+   ....+.|..|.++|||+.||+...+|.|.+|++.+-......
T Consensus       206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence                          000   113567889999999999999999999999999876655443

>KOG2695|consensus

Probab=98.79  E-value=2.3e-08  Score=87.00  Aligned_cols=162  Identities=18%  Similarity=0.201  Sum_probs=118.8

Q ss_pred             EEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc----eeEEecCCceEEEEE
Q psy226          206 LSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET----KAELRGHDHTVECVA  281 (406)
Q Consensus       206 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~v~~~~  281 (406)
                      ++.+.+..|-+-|+.+|.. +.|. .+..|.++.|...++++..|...|.|.++|++....    ....-.|...|+++.
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq  305 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ  305 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence            5667777888999988743 3333 455677788888889999999999999999987622    122234666666654


Q ss_pred             eCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE---EEEEeCCCcCEEEE--EEcCCCCEEEEEeCCC
Q psy226          282 WAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL---LFTLIGHDNWVRGV--TFHPGGKYLVSCGDDK  356 (406)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~---~~~~~~h~~~v~~l--~~s~~g~~l~sgs~d~  356 (406)
                      ...                 ..+.+|++.+.+|.|++||++.-++   +.+..||.+.-.-+  -.++....++++++|.
T Consensus       306 ~Lq-----------------~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc  368 (425)
T KOG2695|consen  306 ILQ-----------------FSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC  368 (425)
T ss_pred             hhc-----------------cccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCee
Confidence            322                 2466899999999999999987766   89999997644333  3456678899999999


Q ss_pred             eEEEEeCCCCccceeeccc----cceEEEEEEeC
Q psy226          357 TLRVWDTANKRNMKTLEAH----SHFVTSLDFHR  386 (406)
Q Consensus       357 ~i~vwd~~~~~~~~~l~~h----~~~v~~l~~~~  386 (406)
                      ..|||.+..++.+.++...    ...+.+++|..
T Consensus       369 ytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  369 YTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             EEEEEecccCceeeccCCCCccccccccceehhc
Confidence            9999999999988877532    22456666643

>KOG1275|consensus

Probab=98.78  E-value=1.4e-07  Score=91.83  Aligned_cols=181  Identities=15%  Similarity=0.156  Sum_probs=135.9

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEE
Q psy226          201 NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECV  280 (406)
Q Consensus       201 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~  280 (406)
                      ++..++-|+-...+..+|++++...+...-....|.-+.  .+++.+.+|...|+|.+-|..+.+.++++..|...+..+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            445677777777888899998877666554443454443  468899999999999999999999999999999988776


Q ss_pred             EeCCCCCccccccccCCCCCCCCCCEEEEEeC---------CCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCC-CCEEE
Q psy226          281 AWAPGVASESISEAAGRPPGQGGGPYLATGSR---------DKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPG-GKYLV  350 (406)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---------d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~-g~~l~  350 (406)
                      ..                    .|+.|++++.         |.-|+|||++.-+.+..+.-+-++ .-+.|+|. ...++
T Consensus       224 Dv--------------------~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~  282 (1118)
T KOG1275|consen  224 DV--------------------QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLA  282 (1118)
T ss_pred             ec--------------------cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEE
Confidence            54                    3667777764         556899999887665443333332 34567775 34677


Q ss_pred             EEeCCCeEEEEeC---CCC-ccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          351 SCGDDKTLRVWDT---ANK-RNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       351 sgs~d~~i~vwd~---~~~-~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      ++|..|...+-|.   .+. ..++.+......+..+++++++..||.|..+|.|.+|.
T Consensus       283 V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  283 VTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            8888899999984   332 23445555666799999999999999999999999995

>KOG2066|consensus

Probab=98.68  E-value=3.4e-06  Score=81.51  Aligned_cols=182  Identities=14%  Similarity=0.180  Sum_probs=128.9

Q ss_pred             ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEE
Q psy226          148 LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKT  227 (406)
Q Consensus       148 ~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~  227 (406)
                      .+.++|++++  +++|+-|..+|.|++.+.... . .+...|...      ..+|.++++||.||+|.|-.+-+.....+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3567777775  579999999999999987643 2 444445443      55799999999999999998877765554


Q ss_pred             eecCCccEEEEEECCC-----CCEEEEEeCCCeEEEEeCCC--ccceeEEecCCceEEEEEeCCCCCccccccccCCCCC
Q psy226          228 LTGHREWVRQIKVSPD-----GTLLASCSNDHTARVWSLAT--KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPG  300 (406)
Q Consensus       228 ~~~~~~~v~~l~~~~~-----~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  300 (406)
                      +. ...++.+++++|+     .+.+++|+.-| +.++.-+=  ......+..-.++|.++.|.                 
T Consensus       109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~-----------------  169 (846)
T KOG2066|consen  109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR-----------------  169 (846)
T ss_pred             Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec-----------------
Confidence            43 3467899999998     56899999988 77765321  11122455667899999996                 


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc------CEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          301 QGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN------WVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       301 ~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~------~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                         |.++|-++.+| |++||+.+++.+..+.....      .-..+.|.++. .|+.|-. -+|+|..++
T Consensus       170 ---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~-d~v~i~~I~  233 (846)
T KOG2066|consen  170 ---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWG-DSVKICSIK  233 (846)
T ss_pred             ---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecC-CeEEEEEEe
Confidence               56777777666 89999998887765543222      23457787654 4555544 478888776

>KOG1920|consensus

Probab=98.66  E-value=3.8e-05  Score=77.73  Aligned_cols=198  Identities=15%  Similarity=0.273  Sum_probs=129.7

Q ss_pred             cCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEc----CC---
Q psy226          149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEV----AT---  221 (406)
Q Consensus       149 ~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~----~~---  221 (406)
                      +.|.++.|..++.-++.+..+|.|.+-|.++... ...-.-+..|.+++|+||+..++..+.++++.+-+-    -.   
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            5899999999999999999999999999887543 222334678999999999999998888888876432    10   


Q ss_pred             ----------------CeEEEEeecCC---------------------ccEEEEEECCCCCEEEEEe----CC-CeEEEE
Q psy226          222 ----------------GYCVKTLTGHR---------------------EWVRQIKVSPDGTLLASCS----ND-HTARVW  259 (406)
Q Consensus       222 ----------------~~~~~~~~~~~---------------------~~v~~l~~~~~~~~l~s~~----~d-~~v~vw  259 (406)
                                      |+....|.|..                     +.=.+++|.-||++||+..    .+ +.++||
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                            11111222110                     1113588999999998832    33 899999


Q ss_pred             eCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEE---eCCCcEEEEECC---CCeEEEEEeCC
Q psy226          260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATG---SRDKTIKLWDVG---SGSLLFTLIGH  333 (406)
Q Consensus       260 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---~~d~~i~lwd~~---~~~~~~~~~~h  333 (406)
                      |-. +..-..-..-...-.+++|-|.                  |..+++-   ..|+.|.+|.-.   -|.....+...
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPs------------------gs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d  288 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPS------------------GSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD  288 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCC------------------CCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence            976 3222222222333457788873                  4445443   345678888742   12222223333


Q ss_pred             CcCEEEEEEcCCCCEEEE---EeCCCeEEEEeCCCC
Q psy226          334 DNWVRGVTFHPGGKYLVS---CGDDKTLRVWDTANK  366 (406)
Q Consensus       334 ~~~v~~l~~s~~g~~l~s---gs~d~~i~vwd~~~~  366 (406)
                      ...|..++|+.++..|++   ......|++|-+.+.
T Consensus       289 e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  289 EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            445899999999999887   555666999988764

>KOG1645|consensus

Probab=98.66  E-value=4.1e-06  Score=74.75  Aligned_cols=92  Identities=12%  Similarity=0.195  Sum_probs=75.6

Q ss_pred             EEEEEcCCCcEEEEecccccCeeeEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCC-CEEEE
Q psy226          130 IRLWDYETGEYERALHGHLDSVQDIAFDQSGK-LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS-DFVLS  207 (406)
Q Consensus       130 v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~-~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s  207 (406)
                      |++.+..+.+....+.+|...|.+++|+|..+ ++..++.+..|+|.|+++..+......+ ..+++++|.-+. +++..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            55555555444556778888999999999877 7888999999999999998888777777 689999998765 57888


Q ss_pred             EeCCCcEEEEEcCCC
Q psy226          208 ASRDKTIKMWEVATG  222 (406)
Q Consensus       208 ~s~d~~i~iwd~~~~  222 (406)
                      |-..|.|.+||++..
T Consensus       254 Gl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQP  268 (463)
T ss_pred             eccCceEEEEEccCC
Confidence            888999999999764

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.65  E-value=3.3e-05  Score=74.52  Aligned_cols=264  Identities=15%  Similarity=0.155  Sum_probs=148.5

Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEEecccc-------------cCee---------------e--EEE---CCCCCEEEEE
Q psy226          120 LMASCSEDATIRLWDYETGEYERALHGHL-------------DSVQ---------------D--IAF---DQSGKLLVSC  166 (406)
Q Consensus       120 ~latgs~dg~v~vwd~~~~~~~~~~~~h~-------------~~V~---------------~--l~~---~~~g~~l~sg  166 (406)
                      .+.||+..|.|+|+-+.+++.++.+.-.+             ..|.               .  +.+   ..||++|..-
T Consensus        68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin  147 (635)
T PRK02888         68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN  147 (635)
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence            46789999999999999988766543110             0111               0  111   1256777665


Q ss_pred             eC-CCcEEEEeCCCCeEEEEEec-CCcceEEEEEe--cCCCEEEEEe------------------CCCcEEEEEcCCCeE
Q psy226          167 SA-DMSLKLWDMSTYQCLKTMQG-HDHNVTGVAFL--PNSDFVLSAS------------------RDKTIKMWEVATGYC  224 (406)
Q Consensus       167 s~-d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--p~~~~l~s~s------------------~d~~i~iwd~~~~~~  224 (406)
                      .. ...|-.-++..+++-+.+.- ....+.+++|.  |+..+++.++                  ..+.+.+.|..+.+.
T Consensus       148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV  227 (635)
T PRK02888        148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEV  227 (635)
T ss_pred             cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceE
Confidence            43 34455556655555443322 12233444443  4444444432                  234455566666554


Q ss_pred             EEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCC
Q psy226          225 VKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGG  304 (406)
Q Consensus       225 ~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (406)
                      ..++.-.. ....+.++|+|+++++.+.+.       ..+..+..+...+.. ..+.|.+.....          ...+|
T Consensus       228 ~~qV~Vdg-npd~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~d-~~vvfni~~iea----------~vkdG  288 (635)
T PRK02888        228 AWQVMVDG-NLDNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAERD-WVVVFNIARIEE----------AVKAG  288 (635)
T ss_pred             EEEEEeCC-CcccceECCCCCEEEEeccCc-------ccCcceeeeccccCc-eEEEEchHHHHH----------hhhCC
Confidence            44443222 335678899999887776321       111111222111111 334444321100          01145


Q ss_pred             CEEEEEeCCCcEEEEECCC----CeEEEEEeCCCcCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcc-----------
Q psy226          305 PYLATGSRDKTIKLWDVGS----GSLLFTLIGHDNWVRGVTFHPGGKYLVSCG-DDKTLRVWDTANKRN-----------  368 (406)
Q Consensus       305 ~~l~s~~~d~~i~lwd~~~----~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs-~d~~i~vwd~~~~~~-----------  368 (406)
                      ++...  .++.|.+.|.++    +..+.....-......+.++|||+++++++ .+.+|.|.|+.+.+.           
T Consensus       289 K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~  366 (635)
T PRK02888        289 KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA  366 (635)
T ss_pred             CEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence            55555  367899999988    433333333455678899999999987655 589999999987542           


Q ss_pred             -ceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          369 -MKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       369 -~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                       +.+..--. .-...+|+++|....|--.|..|..|++
T Consensus       367 vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        367 VVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             EEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEeh
Confidence             22222211 2346689999988888899999999985

>KOG2114|consensus

Probab=98.61  E-value=2.8e-05  Score=75.93  Aligned_cols=206  Identities=14%  Similarity=0.199  Sum_probs=138.4

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccC-eeeEEECCCCCEEEEEeCCC-----cEEEEeCCC------C
Q psy226          113 IFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDS-VQDIAFDQSGKLLVSCSADM-----SLKLWDMST------Y  180 (406)
Q Consensus       113 ~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~-V~~l~~~~~g~~l~sgs~d~-----~i~vwd~~~------~  180 (406)
                      +++|.+..+|.|+.+|.|.+.+-. -+..+.++.+... |..+....+..+|++.+.|+     .+++||++.      .
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            467889999999999999888632 2333556666666 55555544446888777664     499999863      3


Q ss_pred             eEEE--EEec-----CCcceEEEEEecCCCEEEEEeCCCcEEEEEc--C--CCeEEEEeecCCccEEEEEECCCCCEEEE
Q psy226          181 QCLK--TMQG-----HDHNVTGVAFLPNSDFVLSASRDKTIKMWEV--A--TGYCVKTLTGHREWVRQIKVSPDGTLLAS  249 (406)
Q Consensus       181 ~~~~--~~~~-----h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~--~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  249 (406)
                      +++.  .+.+     ...++.+++.+.+-..++.|-.+|.|.++.-  .  .|...........+|+.+++..++..++-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            4442  2222     2457888999988889999999999998842  1  12222333344678999999999887333


Q ss_pred             EeCCCeEEEEeCCCccc-eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy226          250 CSNDHTARVWSLATKET-KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF  328 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~  328 (406)
                      ...-..|.+|.+....+ ...+..|..+..|..+++..                 + .+++++ +..|.+||....++-.
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t-----------------~-qfIca~-~e~l~fY~sd~~~~cf  249 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT-----------------Y-QFICAG-SEFLYFYDSDGRGPCF  249 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCC-----------------c-cEEEec-CceEEEEcCCCcceee
Confidence            33456788999875443 34467788888888887631                 2 244443 4569999987766666


Q ss_pred             EEe-CCCcCEE
Q psy226          329 TLI-GHDNWVR  338 (406)
Q Consensus       329 ~~~-~h~~~v~  338 (406)
                      +|. ||.....
T Consensus       250 af~~g~kk~~~  260 (933)
T KOG2114|consen  250 AFEVGEKKEML  260 (933)
T ss_pred             eecCCCeEEEE
Confidence            776 6665443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.60  E-value=1.5e-06  Score=74.85  Aligned_cols=230  Identities=17%  Similarity=0.334  Sum_probs=132.2

Q ss_pred             ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC-----CeEEEEEecCCc------------ceEEEEEecCCC--EEEEE
Q psy226          148 LDSVQDIAFDQSGKLLVSCSADMSLKLWDMST-----YQCLKTMQGHDH------------NVTGVAFLPNSD--FVLSA  208 (406)
Q Consensus       148 ~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~-----~~~~~~~~~h~~------------~v~~~~~~p~~~--~l~s~  208 (406)
                      .+.|+++.|...|.+|++|...|.|.+|.-+.     .+....+++|+.            .|..+.|..+++  .++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            35689999999999999999999999996542     222334566642            467788876543  56666


Q ss_pred             eCCCcEEEEEcCCCeEEEE--------ee-cCCccEEEEEECCCCCEEEEEe-CCCeEEEEeCCCccceeEEecCCceEE
Q psy226          209 SRDKTIKMWEVATGYCVKT--------LT-GHREWVRQIKVSPDGTLLASCS-NDHTARVWSLATKETKAELRGHDHTVE  278 (406)
Q Consensus       209 s~d~~i~iwd~~~~~~~~~--------~~-~~~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~  278 (406)
                      +.|.+|++|.+........        +. ...+++++    +..-.+--++ .|..|...     ........|..-+.
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s----~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiN  176 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTS----TKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHIN  176 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCC----HHHhhcccccccceEEEec-----cceeccccceeEee
Confidence            7999999999865321100        00 00011110    0000000000 01111111     00111235666677


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE---EEEEeCCC-----cCEEEEEEcCCCCE-E
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL---LFTLIGHD-----NWVRGVTFHPGGKY-L  349 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~---~~~~~~h~-----~~v~~l~~s~~g~~-l  349 (406)
                      ++.+..+                  ...++ .+.|-.|-+|++.....   +.-++.|.     .-|++..|+|.... +
T Consensus       177 SiS~NsD------------------~et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f  237 (460)
T COG5170         177 SISFNSD------------------KETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF  237 (460)
T ss_pred             eeeecCc------------------hheee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE
Confidence            7777653                  22343 45677899999864322   22333342     34788899996433 3


Q ss_pred             EEEeCCCeEEEEeCCCCcc------c--eee--------ccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          350 VSCGDDKTLRVWDTANKRN------M--KTL--------EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       350 ~sgs~d~~i~vwd~~~~~~------~--~~l--------~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      .-.+..|.|++-|++....      +  .++        ..-...|.++.|+++|+|+++-+. -+|+|||.+
T Consensus       238 mYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvn  309 (460)
T COG5170         238 MYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVN  309 (460)
T ss_pred             EEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecc
Confidence            3345679999999873211      1  111        122335889999999999997653 589999974

>KOG4649|consensus

Probab=98.57  E-value=0.00014  Score=61.69  Aligned_cols=139  Identities=12%  Similarity=-0.016  Sum_probs=92.0

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVA  197 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  197 (406)
                      ..+++.||-.+.+.--|..+|++..... -...|.+-+.- -|++++.|...|.+.+.+.+++.....+..-..-=....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            4678888888999888988887654321 11223222211 367899999999999999999966665543332222344


Q ss_pred             EecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Q psy226          198 FLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV  258 (406)
Q Consensus       198 ~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~v  258 (406)
                      ..+++..+..|+.|++....|.++..++...+-...-..+-+++|-...|..+...|.+.-
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vla  161 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLA  161 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEE
Confidence            5678999999999999999999999888876644333333445563333444444454433

>KOG2066|consensus

Probab=98.55  E-value=8.8e-06  Score=78.77  Aligned_cols=155  Identities=16%  Similarity=0.211  Sum_probs=108.3

Q ss_pred             EeccCCCCeEEEEEcC-------------CCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCC-----CCE
Q psy226          101 ALSGHRSPVIKVIFHP-------------VFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQS-----GKL  162 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p-------------~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~-----g~~  162 (406)
                      .+..|.+.|....+.-             +|.+++|||.||+|.|-.+.+.+....+. ...++.+++++|+     .+.
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~  131 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQ  131 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhh
Confidence            4455665555444433             48999999999999999888877554443 4578999999997     568


Q ss_pred             EEEEeCCCcEEEEeCC--CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccE-----
Q psy226          163 LVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWV-----  235 (406)
Q Consensus       163 l~sgs~d~~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v-----  235 (406)
                      +++|+.-| +.++.-.  ..+.--.+....++|.+++|.  |++++-++.+| |++||+.+++.+..+......+     
T Consensus       132 fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~f  207 (846)
T KOG2066|consen  132 FVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELF  207 (846)
T ss_pred             eeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccC
Confidence            99999888 6666422  111111344567899999995  78999988777 8999999988777665443333     


Q ss_pred             -EEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy226          236 -RQIKVSPDGTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       236 -~~l~~~~~~~~l~s~~~d~~v~vwd~~  262 (406)
                       ..+.|.++.++++  |...+|+|..++
T Consensus       208 pphl~W~~~~~LVI--GW~d~v~i~~I~  233 (846)
T KOG2066|consen  208 PPHLHWQDEDRLVI--GWGDSVKICSIK  233 (846)
T ss_pred             CCceEecCCCeEEE--ecCCeEEEEEEe
Confidence             3466766655443  355678888876

>KOG0882|consensus

Probab=98.53  E-value=8.7e-07  Score=79.97  Aligned_cols=201  Identities=18%  Similarity=0.162  Sum_probs=139.5

Q ss_pred             CCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC--C-eEEEEeecCCccEEEEEECCCCCEEEEEeC-CCeEEEEeCCCc
Q psy226          189 HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT--G-YCVKTLTGHREWVRQIKVSPDGTLLASCSN-DHTARVWSLATK  264 (406)
Q Consensus       189 h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~--~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~v~vwd~~~~  264 (406)
                      |.+.|+.+... ..+++.+++.||.++.|--..  | .-++.+..|...+.+++.+-+|.++.|.+. |..++++|+.+-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            66666665443 567999999999999997533  2 234556678888999999999999999887 999999999775


Q ss_pred             cceeEEecC--CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe--EEEEEeCCCcCEEEE
Q psy226          265 ETKAELRGH--DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS--LLFTLIGHDNWVRGV  340 (406)
Q Consensus       265 ~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~--~~~~~~~h~~~v~~l  340 (406)
                      .....++..  ...+ +...+|+.               .-..+-++.-.++.+.++|-....  ....-.-|.++|..+
T Consensus        87 DminmiKL~~lPg~a-~wv~skGd---------------~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i  150 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFA-EWVTSKGD---------------KISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKI  150 (558)
T ss_pred             chhhhcccccCCCce-EEecCCCC---------------eeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEE
Confidence            544333211  1111 11112210               001233344467889999976543  233444599999999


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEeCCC-Cccc--------------eeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          341 TFHPGGKYLVSCGDDKTLRVWDTAN-KRNM--------------KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       341 ~~s~~g~~l~sgs~d~~i~vwd~~~-~~~~--------------~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .+.|-+..++|....|.|.-|.... .+..              ..+.-......++.|+|++..+++-+.|.+|+++..
T Consensus       151 ~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  151 RYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF  230 (558)
T ss_pred             EeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence            9999999999999999999998762 1110              111112345789999999999999999999999986


Q ss_pred             C
Q psy226          406 R  406 (406)
Q Consensus       406 ~  406 (406)
                      +
T Consensus       231 K  231 (558)
T KOG0882|consen  231 K  231 (558)
T ss_pred             c
Confidence            4

>KOG2114|consensus

Probab=98.52  E-value=6e-05  Score=73.74  Aligned_cols=207  Identities=14%  Similarity=0.200  Sum_probs=134.1

Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcc-eEEEEEecCCCEEEEEeCCC-----cEEEEEcCC------C
Q psy226          155 AFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN-VTGVAFLPNSDFVLSASRDK-----TIKMWEVAT------G  222 (406)
Q Consensus       155 ~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~s~d~-----~i~iwd~~~------~  222 (406)
                      +|++++..++.|+.||.|.+.+- +.+.++.++.+... |..+....+.++|++-+.|+     .+++||+..      .
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            45778889999999999888863 34555777777777 44444443446788766654     489999853      2


Q ss_pred             eEE--EEeec-----CCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC----ccceeEEecCCceEEEEEeCCCCCcccc
Q psy226          223 YCV--KTLTG-----HREWVRQIKVSPDGTLLASCSNDHTARVWSLAT----KETKAELRGHDHTVECVAWAPGVASESI  291 (406)
Q Consensus       223 ~~~--~~~~~-----~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~  291 (406)
                      .++  ..+.+     .+.++.+++++.+-+.+|.|-.+|.|..+.-.-    +...........+|+.+++..+..    
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~----  184 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK----  184 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc----
Confidence            344  12222     245678899999999999999999999985321    111111222346788877764311    


Q ss_pred             ccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE-EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccce
Q psy226          292 SEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL-LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMK  370 (406)
Q Consensus       292 ~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~-~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~  370 (406)
                                   ..+.++ .-..|.+|.+....+ ...+..|...+.|.+|++....+++++. ..+.+||......--
T Consensus       185 -------------s~lFv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cf  249 (933)
T KOG2114|consen  185 -------------SVLFVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCF  249 (933)
T ss_pred             -------------eeEEEE-ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceee
Confidence                         112222 234689999874332 4456778888999999886664555543 469999987655555


Q ss_pred             eec-cccceEEE
Q psy226          371 TLE-AHSHFVTS  381 (406)
Q Consensus       371 ~l~-~h~~~v~~  381 (406)
                      ++. +|...+..
T Consensus       250 af~~g~kk~~~~  261 (933)
T KOG2114|consen  250 AFEVGEKKEMLV  261 (933)
T ss_pred             eecCCCeEEEEE
Confidence            666 66655443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.50  E-value=6.7e-05  Score=69.93  Aligned_cols=260  Identities=21%  Similarity=0.239  Sum_probs=135.9

Q ss_pred             cCCCCEEEEE---------eCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q psy226          115 HPVFSLMASC---------SEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKT  185 (406)
Q Consensus       115 ~p~~~~latg---------s~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~  185 (406)
                      |||+++++..         +..+.+.|||+.+++....... ...+....|+|+|+.++-.. ++.|.+++..+++..+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            4566655542         3456799999999876554433 67788999999999998875 57899999877654322


Q ss_pred             E-ec-------C---------CcceEEEEEecCCCEEEEEeCC-CcEEEE------------------------------
Q psy226          186 M-QG-------H---------DHNVTGVAFLPNSDFVLSASRD-KTIKMW------------------------------  217 (406)
Q Consensus       186 ~-~~-------h---------~~~v~~~~~~p~~~~l~s~s~d-~~i~iw------------------------------  217 (406)
                      . .|       -         -..-.++-|+|++++|+....| ..|+.+                              
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence            1 12       0         0122468899999988765433 333333                              


Q ss_pred             -----EcCCCeEEE--Ee---ecCCccEEEEEECCCCCEEEE--EeCCC---eEEEEeCCCccceeEEecCC-ceE---E
Q psy226          218 -----EVATGYCVK--TL---TGHREWVRQIKVSPDGTLLAS--CSNDH---TARVWSLATKETKAELRGHD-HTV---E  278 (406)
Q Consensus       218 -----d~~~~~~~~--~~---~~~~~~v~~l~~~~~~~~l~s--~~~d~---~v~vwd~~~~~~~~~~~~~~-~~v---~  278 (406)
                           |+.++....  ..   ..-...+..+.|.+++..|+.  ...+.   .+.++|..++.......... .-|   .
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence                 222222110  00   012234566777777763322  22322   24455555443322221100 000   0


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCc--EEEEECCCCeEEEEEeCCCcCEE-EEEEcCCCCEE-EEEeC
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT--IKLWDVGSGSLLFTLIGHDNWVR-GVTFHPGGKYL-VSCGD  354 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--i~lwd~~~~~~~~~~~~h~~~v~-~l~~s~~g~~l-~sgs~  354 (406)
                      ...+.                ...+..++.....||-  |.+++...+. ...+....-.|. -+.++++++.| +++..
T Consensus       239 ~~~~~----------------~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~  301 (353)
T PF00930_consen  239 PPHFL----------------GPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANG  301 (353)
T ss_dssp             EEEE-----------------TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred             ccccc----------------cCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecC
Confidence            11111                1124456666667774  5556665555 334444444464 46788887765 45654


Q ss_pred             C----CeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEE
Q psy226          355 D----KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVT  393 (406)
Q Consensus       355 d----~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s  393 (406)
                      +    ..|+.-++..+..++.|......-..+.|+|++++++-
T Consensus       302 ~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  302 DNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             GGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred             CCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence            3    35555566623344455433222268899999998764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3617|consensus

Probab=98.50  E-value=5.2e-06  Score=80.65  Aligned_cols=107  Identities=13%  Similarity=0.257  Sum_probs=81.3

Q ss_pred             EEEcCCCCEEEEEe----CCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q psy226          112 VIFHPVFSLMASCS----EDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       112 v~~~p~~~~latgs----~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      ..|||..+++|.++    ..|+|.|| ..+|+..+-.. ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+......
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~   98 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE   98 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence            35677777776665    35778887 34554322111 11126679999998889999889999999988766655566


Q ss_pred             cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q psy226          188 GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA  220 (406)
Q Consensus       188 ~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~  220 (406)
                      .|..+|..+.|+|+|+.++++..-|.|.+|...
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            799999999999999999999999999999765

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.50  E-value=0.00014  Score=70.78  Aligned_cols=271  Identities=14%  Similarity=0.120  Sum_probs=152.2

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEeccccc------Ce--eeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHLD------SV--QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGH  189 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~------~V--~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h  189 (406)
                      +..++.++.++.|.-.|..+|+..-.......      .+  ..++.. ++..++.++.++.|.-+|..+++.+......
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            45667778889999999999987655543221      11  011221 2267888889999999999999887666433


Q ss_pred             Ccc-----eE-EEEEecCCCEEEEEe---------CCCcEEEEEcCCCeEEEEeecCCcc--------------------
Q psy226          190 DHN-----VT-GVAFLPNSDFVLSAS---------RDKTIKMWEVATGYCVKTLTGHREW--------------------  234 (406)
Q Consensus       190 ~~~-----v~-~~~~~p~~~~l~s~s---------~d~~i~iwd~~~~~~~~~~~~~~~~--------------------  234 (406)
                      ...     +. +..+.  +..++.++         .++.+..+|..+|+.+..+......                    
T Consensus       140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~  217 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT  217 (488)
T ss_pred             CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence            221     11 11222  24555554         3678899999999887766432110                    


Q ss_pred             E-EEEEECCCCCEEEEEeCCC------------------eEEEEeCCCccceeEEecCCceEE--EEEeCCCCCcccccc
Q psy226          235 V-RQIKVSPDGTLLASCSNDH------------------TARVWSLATKETKAELRGHDHTVE--CVAWAPGVASESISE  293 (406)
Q Consensus       235 v-~~l~~~~~~~~l~s~~~d~------------------~v~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~  293 (406)
                      + ...++++.+..++.++.++                  .+.-+|..+++.+=....-.....  .....|     .+..
T Consensus       218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p-----~~~~  292 (488)
T cd00216         218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQP-----SLAD  292 (488)
T ss_pred             ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCC-----eEEe
Confidence            0 1234555566777776655                  688888888776544321111000  000000     0000


Q ss_pred             ccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEE------------------eCC
Q psy226          294 AAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSC------------------GDD  355 (406)
Q Consensus       294 ~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sg------------------s~d  355 (406)
                      .. ...+ .....++.++.+|.+...|.++|+.+......   ...++.+|  ..++.+                  ..+
T Consensus       293 ~~-~~~g-~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~  365 (488)
T cd00216         293 IK-PKDG-KPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGK  365 (488)
T ss_pred             cc-ccCC-CeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCc
Confidence            00 0000 01136788889999999999999988765321   11233444  223222                  235


Q ss_pred             CeEEEEeCCCCccceeeccc--c------ceE--EEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          356 KTLRVWDTANKRNMKTLEAH--S------HFV--TSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       356 ~~i~vwd~~~~~~~~~l~~h--~------~~v--~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |.+.-.|..+++.+=+....  .      ...  ..++  ..+.+|..|+.||.+..+|.
T Consensus       366 G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~  423 (488)
T cd00216         366 GGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDA  423 (488)
T ss_pred             eEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEEC
Confidence            67777888777654333211  0      011  1122  24567888889999988875

The alignment model contains an 8-bladed beta-propeller.

>KOG4649|consensus

Probab=98.47  E-value=0.00023  Score=60.39  Aligned_cols=102  Identities=14%  Similarity=0.100  Sum_probs=71.3

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCee-eEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQ-DIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGV  196 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~-~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  196 (406)
                      +++++.|...|.+++.+..+|+....+..- +.|. .....+++.++..|+.|++....|..+..++...+.......+-
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP  141 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP  141 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence            577999999999999999999655544322 2222 23346788999999999999999999999988876555444555


Q ss_pred             EEecCCCEEEEEeCCCcEEEEEcC
Q psy226          197 AFLPNSDFVLSASRDKTIKMWEVA  220 (406)
Q Consensus       197 ~~~p~~~~l~s~s~d~~i~iwd~~  220 (406)
                      +..|....|..+...|.+.--..+
T Consensus       142 ~i~~g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen  142 VIAPGDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             eecCCCceEEEEeccceEEEEccC
Confidence            566644455555555555443333

>KOG1920|consensus

Probab=98.44  E-value=6.6e-05  Score=76.11  Aligned_cols=213  Identities=15%  Similarity=0.250  Sum_probs=128.8

Q ss_pred             CcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeC----CCcc
Q psy226          190 DHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSL----ATKE  265 (406)
Q Consensus       190 ~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~----~~~~  265 (406)
                      +..|.++.|..+++.++.+..+|.|.+-|..+... .....-...|.+++|+||+++++-.+.++++.+-+-    -..+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            35899999999999999999999999998876532 222233456899999999999999998888876432    1111


Q ss_pred             ce-eEEecCCceEEEEEeCCCC-----------------Cccccc-----cccCCCCCCCCCCEEEEE-----eCCCcEE
Q psy226          266 TK-AELRGHDHTVECVAWAPGV-----------------ASESIS-----EAAGRPPGQGGGPYLATG-----SRDKTIK  317 (406)
Q Consensus       266 ~~-~~~~~~~~~v~~~~~~~~~-----------------~~~~~~-----~~~~~~~~~~~~~~l~s~-----~~d~~i~  317 (406)
                      ++ .... .....-.+-|....                 ....+.     .--.......+|.|+++.     ...+.|+
T Consensus       147 ~L~~d~~-~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  147 PLDADDE-RKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             ccccccc-cccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence            11 0000 00111112221100                 000000     000001223467788873     2337899


Q ss_pred             EEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCc---cceeeccccceEEEEEEeCCCCEE
Q psy226          318 LWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCG---DDKTLRVWDTANKR---NMKTLEAHSHFVTSLDFHRAHPYV  391 (406)
Q Consensus       318 lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs---~d~~i~vwd~~~~~---~~~~l~~h~~~v~~l~~~~~~~~l  391 (406)
                      +||.. |.+-.+-..-...=.+++|-|.|..+++-.   +|+.|.+|..+.-+   ..-.+......|..|+|+.++.+|
T Consensus       226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL  304 (1265)
T ss_pred             Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence            99976 444322222233345799999999998753   46689999754321   111122233348999999999999


Q ss_pred             EE---eeCCCeEEEeec
Q psy226          392 VT---GSVDKTVKVWEC  405 (406)
Q Consensus       392 ~s---gs~Dg~v~iw~~  405 (406)
                      |.   ......|++|-.
T Consensus       305 Av~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  305 AVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             eeeecccccceEEEEEe
Confidence            87   555556999964

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.43  E-value=0.00022  Score=63.07  Aligned_cols=208  Identities=21%  Similarity=0.255  Sum_probs=131.4

Q ss_pred             EEEEEec-CCCEEEEEeCCCc-EEEEEcCCCeEEEEeecCCcc--EEEEEECCCCCEEEEEeC-----CCeEEEEeCC-C
Q psy226          194 TGVAFLP-NSDFVLSASRDKT-IKMWEVATGYCVKTLTGHREW--VRQIKVSPDGTLLASCSN-----DHTARVWSLA-T  263 (406)
Q Consensus       194 ~~~~~~p-~~~~l~s~s~d~~-i~iwd~~~~~~~~~~~~~~~~--v~~l~~~~~~~~l~s~~~-----d~~v~vwd~~-~  263 (406)
                      ..++.+| ....++.+-+-|+ ..+||..++.....+......  ----+|++||++|++.-+     .|.|-|||.. +
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            4577888 4556777877775 568999999877665432221  112579999999988654     4789999998 5


Q ss_pred             ccceeEEecCCceEEEEEeCCCCCcccccc--ccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEE--E--eCCCcCE
Q psy226          264 KETKAELRGHDHTVECVAWAPGVASESISE--AAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFT--L--IGHDNWV  337 (406)
Q Consensus       264 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~--~--~~h~~~v  337 (406)
                      -..+.++..|.-....+.+.|+.....+..  +...|  +.+...|-....+-.+...|..+|+.+..  +  .-|...|
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thp--d~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHP--DSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCc--ccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence            566777777665555666777532111110  00000  00111222333455677778888887765  4  3377789


Q ss_pred             EEEEEcCCCCEEEEEeCCCe-------EEEEeCCCCccceee-------ccccceEEEEEEeCCCCEE-EEeeCCCeEEE
Q psy226          338 RGVTFHPGGKYLVSCGDDKT-------LRVWDTANKRNMKTL-------EAHSHFVTSLDFHRAHPYV-VTGSVDKTVKV  402 (406)
Q Consensus       338 ~~l~~s~~g~~l~sgs~d~~-------i~vwd~~~~~~~~~l-------~~h~~~v~~l~~~~~~~~l-~sgs~Dg~v~i  402 (406)
                      +.++++++|..++..=..|.       |-+++...  .+..+       ..-.++|-+|++++++.++ +|+=.-|.+.+
T Consensus       166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            99999999987766543332       34444322  12222       2345689999999999877 55667788999


Q ss_pred             eec
Q psy226          403 WEC  405 (406)
Q Consensus       403 w~~  405 (406)
                      ||.
T Consensus       244 ~d~  246 (305)
T PF07433_consen  244 WDA  246 (305)
T ss_pred             EEC
Confidence            985

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.42  E-value=0.00061  Score=66.38  Aligned_cols=246  Identities=15%  Similarity=0.175  Sum_probs=138.1

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEecccccC-----ee-eEEECCCCCEEEEEe---------CCCcEEEEeCCCCeEE
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHGHLDS-----VQ-DIAFDQSGKLLVSCS---------ADMSLKLWDMSTYQCL  183 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~-----V~-~l~~~~~g~~l~sgs---------~d~~i~vwd~~~~~~~  183 (406)
                      ..++.++.+|.|.-+|..+|+..-........     +. +..+.  +.+++.++         .++.+..+|..+++.+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            57777888999999999999987665432210     11 11222  24455554         3678899999999887


Q ss_pred             EEEecCCc--------------------ce-EEEEEecCCCEEEEEeCCC------------------cEEEEEcCCCeE
Q psy226          184 KTMQGHDH--------------------NV-TGVAFLPNSDFVLSASRDK------------------TIKMWEVATGYC  224 (406)
Q Consensus       184 ~~~~~h~~--------------------~v-~~~~~~p~~~~l~s~s~d~------------------~i~iwd~~~~~~  224 (406)
                      -.......                    .+ ...++.+.+..++.++.++                  .|.-+|..+|+.
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~  268 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV  268 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence            66543211                    01 1234455567788887665                  688899999988


Q ss_pred             EEEeec--CCccE----EEEEE----CCCCC---EEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCcccc
Q psy226          225 VKTLTG--HREWV----RQIKV----SPDGT---LLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESI  291 (406)
Q Consensus       225 ~~~~~~--~~~~v----~~l~~----~~~~~---~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  291 (406)
                      .-.++.  |..+.    ....+    .-+|.   .++.++.+|.+...|..+++.+-......   ..+...|+......
T Consensus       269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~~~vyv~~  345 (488)
T cd00216         269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDPGLVYLGA  345 (488)
T ss_pred             EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCCceEEEcc
Confidence            877642  21110    00011    11333   57788899999999999987764432110   00111110000000


Q ss_pred             cc-ccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC--------cCE--EEEEEcCCCCEEEEEeCCCeEEE
Q psy226          292 SE-AAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD--------NWV--RGVTFHPGGKYLVSCGDDKTLRV  360 (406)
Q Consensus       292 ~~-~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~--------~~v--~~l~~s~~g~~l~sgs~d~~i~v  360 (406)
                      .. ....+.   ....+.....+|.|.-.|+.+|+.+-......        ...  ..+.  ..+..|+.++.||.|+.
T Consensus       346 ~~~~~~~~~---~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~a  420 (488)
T cd00216         346 FHIPLGLPP---QKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRA  420 (488)
T ss_pred             ccccccCcc---cccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEE
Confidence            00 000000   00000011235667777888887765544220        111  1222  24678899999999999


Q ss_pred             EeCCCCccceeecc
Q psy226          361 WDTANKRNMKTLEA  374 (406)
Q Consensus       361 wd~~~~~~~~~l~~  374 (406)
                      +|..+++.+-+.+.
T Consensus       421 ld~~tG~~lW~~~~  434 (488)
T cd00216         421 FDATTGKELWKFRT  434 (488)
T ss_pred             EECCCCceeeEEEC
Confidence            99999998766654

The alignment model contains an 8-bladed beta-propeller.

>KOG3617|consensus

Probab=98.40  E-value=1.2e-05  Score=78.27  Aligned_cols=271  Identities=12%  Similarity=0.172  Sum_probs=153.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE--E
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKT--M  186 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~--~  186 (406)
                      +++++|||..-.||.|-.-|.+.+|...+.+.......|+.+|..+.|+++|..|+++..=|.+.+|....-..++.  +
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~  141 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI  141 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence            46789999999999999999999999998887777778999999999999999999999999999997652111111  1


Q ss_pred             ecCC--cc--eEEEEEecCCC------EEEEEeCCCcEE-EEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCe
Q psy226          187 QGHD--HN--VTGVAFLPNSD------FVLSASRDKTIK-MWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHT  255 (406)
Q Consensus       187 ~~h~--~~--v~~~~~~p~~~------~l~s~s~d~~i~-iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~  255 (406)
                      ..|+  ..  ..|...++++.      ..++.+++..+- .++-+........ .|.       -.|+|..|..++.+|+
T Consensus       142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~-~ks-------gv~~g~~F~~~~~~Gt  213 (1416)
T KOG3617|consen  142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD-EKS-------GVPKGTEFLFAGKSGT  213 (1416)
T ss_pred             hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc-ccc-------CCCCCcEEEEEcCCce
Confidence            1121  12  33444455532      233444444332 2222111001111 111       2578899999999999


Q ss_pred             EEEEeCCCccceeEEe----------cCCceEEEE--------EeCCCC-Ccccccc--ccCCCCCCCCCCEEEEEeCCC
Q psy226          256 ARVWSLATKETKAELR----------GHDHTVECV--------AWAPGV-ASESISE--AAGRPPGQGGGPYLATGSRDK  314 (406)
Q Consensus       256 v~vwd~~~~~~~~~~~----------~~~~~v~~~--------~~~~~~-~~~~~~~--~~~~~~~~~~~~~l~s~~~d~  314 (406)
                      |+..|-... .....+          +....|.++        -+.|.. .......  ..+...+. .|. ++++-..|
T Consensus       214 Vyyvdq~g~-~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Ggr-qGg-iA~sEssG  290 (1416)
T KOG3617|consen  214 VYYVDQNGR-QRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGR-QGG-IACSESSG  290 (1416)
T ss_pred             EEEEcCCCc-EEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCc-cCc-cccccccc
Confidence            999884322 111111          111122211        111111 0000000  00011111 122 34433334


Q ss_pred             cEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC-CC---C---ccceeecc---ccceEEEEEE
Q psy226          315 TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT-AN---K---RNMKTLEA---HSHFVTSLDF  384 (406)
Q Consensus       315 ~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~-~~---~---~~~~~l~~---h~~~v~~l~~  384 (406)
                      .++      ....+.+. ....+.+++++..+..|..|...|.+.+|-- ..   +   ...-++++   -.+.|+.+.|
T Consensus       291 vLr------~~eKyg~e-~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~W  363 (1416)
T KOG3617|consen  291 VLR------KSEKYGLE-LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRW  363 (1416)
T ss_pred             ccc------CCcchhhh-cCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEe
Confidence            221      11111111 2446899999999999999999999999943 22   1   11222322   2446899999


Q ss_pred             eCCCCEEEEeeCC
Q psy226          385 HRAHPYVVTGSVD  397 (406)
Q Consensus       385 ~~~~~~l~sgs~D  397 (406)
                      .|..+.++.-+..
T Consensus       364 g~~k~~~avn~~~  376 (1416)
T KOG3617|consen  364 GPIKSTAAVNTEE  376 (1416)
T ss_pred             ccccchhhhhhhh
Confidence            9977766654433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=0.0019  Score=60.77  Aligned_cols=258  Identities=19%  Similarity=0.198  Sum_probs=157.7

Q ss_pred             eEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEE
Q psy226          109 VIKVIFHPVFSLM-ASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV-SCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       109 V~~v~~~p~~~~l-atgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~-sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      ...+...|++..+ ++-.....+.+-+............-...-..+++++.+..++ ....+..|.+.|..+.......
T Consensus        33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~  112 (381)
T COG3391          33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI  112 (381)
T ss_pred             CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe
Confidence            3456777877433 3333333555555442222222221113345778888888554 4445689999998776666554


Q ss_pred             ecCCcceEEEEEecCCCEEEEEeC---CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe-CCCeEEEEeCC
Q psy226          187 QGHDHNVTGVAFLPNSDFVLSASR---DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS-NDHTARVWSLA  262 (406)
Q Consensus       187 ~~h~~~v~~~~~~p~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~  262 (406)
                      .--. .-..++++|+++.+..+..   ++++.+.|-.++........-..+ ..++++|+|+.++.+. .++.+.+.|..
T Consensus       113 ~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~  190 (381)
T COG3391         113 PVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS  190 (381)
T ss_pred             eecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence            3222 5667999999987766554   688999999888877775443334 7899999999665554 78999999976


Q ss_pred             Ccccee-E---EecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC---CcEEEEECCCCeEEEEEeCCCc
Q psy226          263 TKETKA-E---LRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD---KTIKLWDVGSGSLLFTLIGHDN  335 (406)
Q Consensus       263 ~~~~~~-~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~lwd~~~~~~~~~~~~h~~  335 (406)
                      ...... .   ...-......+.+.|                  +|.++......   +.+...|..++.....-..-..
T Consensus       191 ~~~v~~~~~~~~~~~~~~P~~i~v~~------------------~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~  252 (381)
T COG3391         191 GNSVVRGSVGSLVGVGTGPAGIAVDP------------------DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS  252 (381)
T ss_pred             CcceeccccccccccCCCCceEEECC------------------CCCEEEEEeccCCCceEEEEeCCCceEEEecccccc
Confidence            543331 0   000011112233333                  34444333332   5889999888777655221111


Q ss_pred             -CEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCccceeeccccc---eEEEEEEeC
Q psy226          336 -WVRGVTFHPGGKYLVSCG-DDKTLRVWDTANKRNMKTLEAHSH---FVTSLDFHR  386 (406)
Q Consensus       336 -~v~~l~~s~~g~~l~sgs-~d~~i~vwd~~~~~~~~~l~~h~~---~v~~l~~~~  386 (406)
                       ....+.++|+|.++.+.. ..+.+.+.|..+............   .+..+++.+
T Consensus       253 ~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~  308 (381)
T COG3391         253 GAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP  308 (381)
T ss_pred             CCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence             567789999999988774 458999999988776665543322   344555544

>KOG3621|consensus

Probab=98.36  E-value=0.00015  Score=69.54  Aligned_cols=117  Identities=14%  Similarity=0.129  Sum_probs=88.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE-
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC-  182 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~-  182 (406)
                      |...|.--++...+.+++.|+..|.|++|+-.+++....-. +-.+.+..+..+++..++|.|+..|.|.++-+..... 
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            33445555677788999999999999999988876543332 3334455667888888999999999999998765321 


Q ss_pred             --EEE---EecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q psy226          183 --LKT---MQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT  221 (406)
Q Consensus       183 --~~~---~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~  221 (406)
                        ...   -+.|...|++++|++++..+++|...|+|.+-.+.+
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence              111   123677899999999999999999999998887766

>KOG1645|consensus

Probab=98.31  E-value=2.5e-05  Score=69.84  Aligned_cols=93  Identities=14%  Similarity=0.214  Sum_probs=78.9

Q ss_pred             EEEEeCCCCeEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCC-CEEEE
Q psy226          172 LKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG-TLLAS  249 (406)
Q Consensus       172 i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s  249 (406)
                      +++.+..+.+....+.+|...|.+++|+|..+ ++..++.+.+|+|.|+++..++..+..+ ..+.+++|+-+. +++..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            67776666666667778888999999999876 7889999999999999999998888888 778999998765 56777


Q ss_pred             EeCCCeEEEEeCCCcc
Q psy226          250 CSNDHTARVWSLATKE  265 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~~  265 (406)
                      |-..|.|.|||++..+
T Consensus       254 Gl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eccCceEEEEEccCCC
Confidence            8889999999998754

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.28  E-value=0.00029  Score=65.95  Aligned_cols=278  Identities=14%  Similarity=0.172  Sum_probs=138.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC---------
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS---------  178 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~---------  178 (406)
                      .|+.+.|.++..-|+.|...|.|.||.+...+.-.  ..-..+-....+.+-      ...++.-.+-|+.         
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence            58899999999999999999999999876543221  000001111111110      0111122233332         


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe--ec------CCccEEEEEEC-----CCC-
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL--TG------HREWVRQIKVS-----PDG-  244 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~------~~~~v~~l~~~-----~~~-  244 (406)
                      ......-+....++|++++.+ +=.+++.|..+|.+.|.|++....+..-  ..      ....++++.|.     .|+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            122334445557899999997 5569999999999999999877666542  22      23467777775     233 


Q ss_pred             --CEEEEEeCCCeEEEEeCCC-ccc--e----eEEecCCceEEEEE-eCCCCCccccc---cccCCCCCCCCCCEEEEEe
Q psy226          245 --TLLASCSNDHTARVWSLAT-KET--K----AELRGHDHTVECVA-WAPGVASESIS---EAAGRPPGQGGGPYLATGS  311 (406)
Q Consensus       245 --~~l~s~~~d~~v~vwd~~~-~~~--~----~~~~~~~~~v~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~l~s~~  311 (406)
                        -.++.|.+.|.+.+|.+-- ...  .    .....+..++..+. +..........   .......+. .-+-++...
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~-~i~g~vVvv  232 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGI-SIPGYVVVV  232 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-----EEEEEE
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCC-CcCcEEEEE
Confidence              4688899999999998741 111  1    11113444544443 21211111110   000000011 112234445


Q ss_pred             CCCcEEEEECCCCeEEEEEeCCCcCEEEEEEc-----CCCCEEEEEeCCCeEEEEeCCCCccceeeccc----cceEEEE
Q psy226          312 RDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFH-----PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH----SHFVTSL  382 (406)
Q Consensus       312 ~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s-----~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h----~~~v~~l  382 (406)
                      .+..+|++...+.+..+......-....+.+-     ..+..|++-..+|.|+++.+..-+.+..++..    ...+...
T Consensus       233 Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s  312 (395)
T PF08596_consen  233 SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS  312 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred             cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence            57789999998887766555332334444552     35677888899999999999887777666542    2234456


Q ss_pred             EEeCCCCEEEEee
Q psy226          383 DFHRAHPYVVTGS  395 (406)
Q Consensus       383 ~~~~~~~~l~sgs  395 (406)
                      .+.++|..++-.|
T Consensus       313 sis~~Gdi~~~~g  325 (395)
T PF08596_consen  313 SISRNGDIFYWTG  325 (395)
T ss_dssp             EE-TTS-EEEE-S
T ss_pred             EECCCCCEEEEeC
Confidence            6788888775554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.26  E-value=0.00043  Score=67.07  Aligned_cols=198  Identities=13%  Similarity=0.094  Sum_probs=108.6

Q ss_pred             EEEcCCCCEEE-EEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC----CcEEEEeCCCCeEEEEE
Q psy226          112 VIFHPVFSLMA-SCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD----MSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       112 v~~~p~~~~la-tgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d----~~i~vwd~~~~~~~~~~  186 (406)
                      +-++|+|..+. +.-..+.+.+.|.++.+....+.--. .-..++++++|+++++.+.+    .++..-+......+..+
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            33567776553 44456778888988877665544222 33567899999999887642    22333322211111111


Q ss_pred             ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC----CeEEEEeecCCccEEEEEECCCCCEEEEEe-CCCeEEEEeC
Q psy226          187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT----GYCVKTLTGHREWVRQIKVSPDGTLLASCS-NDHTARVWSL  261 (406)
Q Consensus       187 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~----~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~  261 (406)
                      .-  ..+  -++.++|++...  .++.|.+.|..+    +..+...-.-......+.++|||+++++++ .+.+|.|+|+
T Consensus       277 ni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv  350 (635)
T PRK02888        277 NI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV  350 (635)
T ss_pred             ch--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence            00  000  123456776665  367899999988    433333323445567899999999876655 6999999999


Q ss_pred             CCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q psy226          262 ATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS  323 (406)
Q Consensus       262 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~  323 (406)
                      .+.....  .+.-.+-.++.-.+..     ..-..+..++..|....|-.-|.+|..||+.+
T Consensus       351 ~k~k~~~--~~~~~~~~~vvaevev-----GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        351 RKLDDLF--DGKIKPRDAVVAEPEL-----GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhhhhh--hccCCccceEEEeecc-----CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            8754210  0000000000000000     00000011123466777788899999999865

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.22  E-value=1.3e-05  Score=75.39  Aligned_cols=73  Identities=19%  Similarity=0.227  Sum_probs=61.5

Q ss_pred             eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          331 IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       331 ~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ....+.|.+++++|+...|+.|+.||+|.+||...+.  ..+....-..+.++|||+|.++++|+.-|.+.+||+
T Consensus       256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM  328 (545)
T ss_pred             EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence            3567789999999999999999999999999986652  223233445788999999999999999999999996

>KOG1008|consensus

Probab=98.22  E-value=8.5e-07  Score=83.50  Aligned_cols=221  Identities=15%  Similarity=0.251  Sum_probs=134.1

Q ss_pred             ccCeeeEEECCCC--CEEEEEeCCCcEEEEeCCCCe--EEEEEecCCcceEEEEEecC-CCEEEEEe----CCCcEEEEE
Q psy226          148 LDSVQDIAFDQSG--KLLVSCSADMSLKLWDMSTYQ--CLKTMQGHDHNVTGVAFLPN-SDFVLSAS----RDKTIKMWE  218 (406)
Q Consensus       148 ~~~V~~l~~~~~g--~~l~sgs~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~-~~~l~s~s----~d~~i~iwd  218 (406)
                      +..+.|+++..+.  ..++.|..+|.|-+-.+....  -.....+|....++++|++- .+.|++|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3456777765543  478899999999988765321  12345677888999999984 45566552    367899999


Q ss_pred             cCCCeE----EEEeec-CCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccc
Q psy226          219 VATGYC----VKTLTG-HREWVRQIKVSPDGTLLASCSNDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESIS  292 (406)
Q Consensus       219 ~~~~~~----~~~~~~-~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~  292 (406)
                      +.++..    ...|.+ .-....+++|..+.+++.+|...+.+.++|++-. .....+.  +..+..+...|-       
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--Tk~vqG~tVdp~-------  206 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--TKYVQGITVDPF-------  206 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--hhhcccceecCC-------
Confidence            987621    112222 3334567888888899999999999999999732 1111111  112233333331       


Q ss_pred             cccCCCCCCCCCCEEEEEeCCCcEEEEE-CCCCeE-EEEEeCCC----cCEEEEEEcCCCC-EEEEEe-CCCeEEEEeCC
Q psy226          293 EAAGRPPGQGGGPYLATGSRDKTIKLWD-VGSGSL-LFTLIGHD----NWVRGVTFHPGGK-YLVSCG-DDKTLRVWDTA  364 (406)
Q Consensus       293 ~~~~~~~~~~~~~~l~s~~~d~~i~lwd-~~~~~~-~~~~~~h~----~~v~~l~~s~~g~-~l~sgs-~d~~i~vwd~~  364 (406)
                                .+.|+++-+ ||.|.+|| .++-+. +..+....    ..+..++|+|... .+++.. +.++|+.+|+.
T Consensus       207 ----------~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  207 ----------SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ----------CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence                      244665544 99999999 333222 22222122    2488999999643 344444 45789999874


Q ss_pred             CC------cc---c--ee---eccc--cceEEEEEEeCCC
Q psy226          365 NK------RN---M--KT---LEAH--SHFVTSLDFHRAH  388 (406)
Q Consensus       365 ~~------~~---~--~~---l~~h--~~~v~~l~~~~~~  388 (406)
                      .-      ..   +  ..   ++..  -..|.+..||+..
T Consensus       276 ~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s  315 (783)
T KOG1008|consen  276 VVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTAS  315 (783)
T ss_pred             ccCCcccccccceeeecccccccccccccceeecCcCcCC
Confidence            21      10   0  01   2212  2468888888765

>KOG1008|consensus

Probab=98.17  E-value=4.8e-07  Score=85.09  Aligned_cols=196  Identities=20%  Similarity=0.303  Sum_probs=128.2

Q ss_pred             CeEEEEEc--CCCCEEEEEeCCCcEEEEEcCCCcE--EEEecccccCeeeEEECC-CCCEEEEEe----CCCcEEEEeCC
Q psy226          108 PVIKVIFH--PVFSLMASCSEDATIRLWDYETGEY--ERALHGHLDSVQDIAFDQ-SGKLLVSCS----ADMSLKLWDMS  178 (406)
Q Consensus       108 ~V~~v~~~--p~~~~latgs~dg~v~vwd~~~~~~--~~~~~~h~~~V~~l~~~~-~g~~l~sgs----~d~~i~vwd~~  178 (406)
                      .+-|++..  .+..+++.|..+|.|.+-.......  .....+|....++++|++ |.+.||.|-    .|..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            34555543  3446899999999999987765432  234567888999999988 456677663    35679999997


Q ss_pred             CC--eEE--EEEec-CCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC-CCCEEEEEeC
Q psy226          179 TY--QCL--KTMQG-HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLASCSN  252 (406)
Q Consensus       179 ~~--~~~--~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~  252 (406)
                      ++  .+.  ..+.+ ......+++|..+.+++++|...+.+.++|++... .....-.+..+..+.++| .+.++++-. 
T Consensus       138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~-  215 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS-  215 (783)
T ss_pred             cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceeccc-
Confidence            65  111  11222 33445688898888899999999999999997431 111112234566678888 778887766 


Q ss_pred             CCeEEEEe-CCCc-cceeEEecCC----ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC-CcEEEEECC
Q psy226          253 DHTARVWS-LATK-ETKAELRGHD----HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD-KTIKLWDVG  322 (406)
Q Consensus       253 d~~v~vwd-~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~lwd~~  322 (406)
                      ||.|-+|| .++- .+...+...+    ..+..++|.|..                .| .+++.+.| ++|+++|+.
T Consensus       216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr----------------tg-lla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR----------------TG-LLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC----------------cc-hhhhhccCcceEEEeccc
Confidence            99999999 3322 2222221111    237788999853                22 35555554 679999974

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.17  E-value=0.0039  Score=54.35  Aligned_cols=200  Identities=15%  Similarity=0.261  Sum_probs=114.1

Q ss_pred             EEecccccCeeeEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEecC-CcceEEEEEecCCCEEEEEeCCCcEEEEEc
Q psy226          142 RALHGHLDSVQDIAFDQSGK-LLVSCSADMSLKLWDMSTYQCLKTMQGH-DHNVTGVAFLPNSDFVLSASRDKTIKMWEV  219 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~-~l~sgs~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~  219 (406)
                      +.+.+-...+.+|+|+|+.+ ++++....+.|...+. +++.++.+.-. .+..-++++..++.++++--+++.+.+.++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            34555566799999999755 5566667788888886 46777776543 356888999877777777667899999888


Q ss_pred             CCCe------EEEEee-----cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC---ccceeEE--------ecCCceE
Q psy226          220 ATGY------CVKTLT-----GHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT---KETKAEL--------RGHDHTV  277 (406)
Q Consensus       220 ~~~~------~~~~~~-----~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~---~~~~~~~--------~~~~~~v  277 (406)
                      ....      ....+.     .++..+-.++|+|.++.|+.+-......++.+..   .......        ......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            3211      112221     2445588999999888887777777777776653   1111110        1122334


Q ss_pred             EEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe--C--C-----CcCEEEEEEcCCCCE
Q psy226          278 ECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI--G--H-----DNWVRGVTFHPGGKY  348 (406)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~--~--h-----~~~v~~l~~s~~g~~  348 (406)
                      ..+.+.|.                 .+.+++.......|..+| .+|+.+..+.  .  |     -...-.|+|+++|+.
T Consensus       174 S~l~~~p~-----------------t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L  235 (248)
T PF06977_consen  174 SGLSYDPR-----------------TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL  235 (248)
T ss_dssp             -EEEEETT-----------------TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred             cceEEcCC-----------------CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE
Confidence            55556553                 466788888888899999 5677655432  2  1     124678999999965


Q ss_pred             EEEEeCCCeEEEE
Q psy226          349 LVSCGDDKTLRVW  361 (406)
Q Consensus       349 l~sgs~d~~i~vw  361 (406)
                      .++ |+-+..++|
T Consensus       236 YIv-sEpNlfy~f  247 (248)
T PF06977_consen  236 YIV-SEPNLFYRF  247 (248)
T ss_dssp             EEE-ETTTEEEEE
T ss_pred             EEE-cCCceEEEe
Confidence            554 455666554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.15  E-value=1.5e-05  Score=74.93  Aligned_cols=74  Identities=24%  Similarity=0.178  Sum_probs=62.5

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      ...++|.|++++|+...|+.|+.||+|.+||...+....  ..+.-..+.++|+|+|..+++|+.-|.+.+||+.-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            467899999999999999999999999999987763222  22334577899999999999999999999999863

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.05  E-value=0.0037  Score=59.46  Aligned_cols=144  Identities=13%  Similarity=0.140  Sum_probs=81.4

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEE
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCL  183 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~  183 (406)
                      ...-....+.++|.++.++. +.||.-.|+.....+...     .+.-...+|.+.+ .+|+-....+|+++.--+....
T Consensus        30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred             CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence            34445678999999999998 457888888744433222     2345678898855 4666666889999732221111


Q ss_pred             EEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy226          184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       184 ~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~  262 (406)
                      +.+... ..+..+-.   |.+|...+.+ .|.+||..++..+..+...  .|..+.|+++|++++..+.+ .+.+++..
T Consensus       103 k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~  173 (443)
T PF04053_consen  103 KSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYN  173 (443)
T ss_dssp             -----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             eEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence            122211 12333322   7767666554 8999999999999888644  38899999999999988755 67776653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.03  E-value=0.017  Score=56.75  Aligned_cols=199  Identities=17%  Similarity=0.090  Sum_probs=110.4

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccc-cCee----------eEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHL-DSVQ----------DIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~-~~V~----------~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      +..|+.++.++.|.-.|..+|+.+-...... ..+.          .+++  .+..++.++.|+.+.-.|..+++.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4577778888999999999998776554211 1111          1222  2346778888999999999999887654


Q ss_pred             ecCCcc-eEEEEEec--CCCEEEEEeC------CCcEEEEEcCCCeEEEEeecCCc------------------------
Q psy226          187 QGHDHN-VTGVAFLP--NSDFVLSASR------DKTIKMWEVATGYCVKTLTGHRE------------------------  233 (406)
Q Consensus       187 ~~h~~~-v~~~~~~p--~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~~~------------------------  233 (406)
                      ...... -..+.-.|  .+..++.++.      +|.|.-+|.++|+.+-.+..-..                        
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            421110 00111112  1335555542      68899999999987765432110                        


Q ss_pred             -------cE-EEEEECCCCCEEEEEeCC-----C-----------eEEEEeCCCccceeEEecCCceEEEEEeCCCCCcc
Q psy226          234 -------WV-RQIKVSPDGTLLASCSND-----H-----------TARVWSLATKETKAELRGHDHTVECVAWAPGVASE  289 (406)
Q Consensus       234 -------~v-~~l~~~~~~~~l~s~~~d-----~-----------~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  289 (406)
                             .+ ..++++|+..++..+...     +           .|.-.|+++++.+-.++...+.+...    +....
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~----d~~~~  302 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDY----DGVNE  302 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccc----cCCCC
Confidence                   00 124666665555554422     2           44455555555544333322221111    00000


Q ss_pred             ccccccCCCCCCCCC---CEEEEEeCCCcEEEEECCCCeEE
Q psy226          290 SISEAAGRPPGQGGG---PYLATGSRDKTIKLWDVGSGSLL  327 (406)
Q Consensus       290 ~~~~~~~~~~~~~~~---~~l~s~~~d~~i~lwd~~~~~~~  327 (406)
                      .+     ......+|   +.++.+..+|.+.+.|..+|+.+
T Consensus       303 p~-----l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       303 MI-----LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cE-----EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            00     00000123   47889999999999999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.00  E-value=0.0055  Score=58.13  Aligned_cols=201  Identities=13%  Similarity=0.162  Sum_probs=96.2

Q ss_pred             cEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee-------cCCccEEEEEECCC
Q psy226          171 SLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT-------GHREWVRQIKVSPD  243 (406)
Q Consensus       171 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~~~~  243 (406)
                      .|.+|+.. |+.+.++.-..+.|.++.|..+ ..|+.-..||+++++|+.... ...+.       -....+....+..+
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCC
Confidence            47888764 4445554433478999999875 456666799999999986332 11111       01111112223334


Q ss_pred             CCEEEEEeCCCeEEEEeCCCcc-ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC
Q psy226          244 GTLLASCSNDHTARVWSLATKE-TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG  322 (406)
Q Consensus       244 ~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~  322 (406)
                      |-.++  ..++.+.+..-.... ....+..-........+.+....  +      ..........+....++.+.+.+-.
T Consensus       139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~--i------~~l~~~~~~~i~~~~g~~i~~i~~~  208 (410)
T PF04841_consen  139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTV--I------PLLSSDRVVEILLANGETIYIIDEN  208 (410)
T ss_pred             CEEEE--CCCCeEEEEeCccccchhhccccCCCccccccccccccc--c------eEeecCcceEEEEecCCEEEEEEcc
Confidence            43333  334444443221111 00001000000000000000000  0      0000112233333344444433322


Q ss_pred             CCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc-cceEEEEEEeCCC
Q psy226          323 SGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH-SHFVTSLDFHRAH  388 (406)
Q Consensus       323 ~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h-~~~v~~l~~~~~~  388 (406)
                      ....    ....+.+..+++||+|++||.-..+|.+.|.+..-.+.+..+... ......+.|.-+.
T Consensus       209 ~~~~----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  209 SFKQ----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             cccc----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            1111    112357999999999999999999999999887655555555433 2234556665444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.95  E-value=0.02  Score=54.75  Aligned_cols=238  Identities=16%  Similarity=0.154  Sum_probs=125.5

Q ss_pred             eEEEEEcCCCCEEEEE-eCCCc----EEEEEcCCCcEEEE-ecccccCeeeEEECCCCCEEEEEeCCC-----------c
Q psy226          109 VIKVIFHPVFSLMASC-SEDAT----IRLWDYETGEYERA-LHGHLDSVQDIAFDQSGKLLVSCSADM-----------S  171 (406)
Q Consensus       109 V~~v~~~p~~~~latg-s~dg~----v~vwd~~~~~~~~~-~~~h~~~V~~l~~~~~g~~l~sgs~d~-----------~  171 (406)
                      +....++|+++++|-+ +..|.    +++.|+.+|+.+.. +..  .....+.|.++++.|+-...+.           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            3367899999988854 45554    99999999976542 221  1122399999988776554333           3


Q ss_pred             EEEEeCCCCeE--EEEEecCCcc--eEEEEEecCCCEEEEEeCC----CcEEEEEcCCC----eEEEEeecCCccE-EEE
Q psy226          172 LKLWDMSTYQC--LKTMQGHDHN--VTGVAFLPNSDFVLSASRD----KTIKMWEVATG----YCVKTLTGHREWV-RQI  238 (406)
Q Consensus       172 i~vwd~~~~~~--~~~~~~h~~~--v~~~~~~p~~~~l~s~s~d----~~i~iwd~~~~----~~~~~~~~~~~~v-~~l  238 (406)
                      |+.|.+.+...  ...+......  ...+..++++++|+..+..    ..+.+.|+..+    .....+......+ ..+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            77888876532  2333333333  5678889999987654332    34777788764    2333333333333 223


Q ss_pred             EECCCCCEEEEEe---CCCeEEEEeCCCccc---eeEEecCCc--eEEEEEeCCCCCccccccccCCCCCCCCCCEEEEE
Q psy226          239 KVSPDGTLLASCS---NDHTARVWSLATKET---KAELRGHDH--TVECVAWAPGVASESISEAAGRPPGQGGGPYLATG  310 (406)
Q Consensus       239 ~~~~~~~~l~s~~---~d~~v~vwd~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  310 (406)
                      ... .+.+++...   ..+.|...++.....   ...+..+..  .+..+...                   .+.+++.-
T Consensus       284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-------------------~~~Lvl~~  343 (414)
T PF02897_consen  284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-------------------KDYLVLSY  343 (414)
T ss_dssp             EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-------------------TTEEEEEE
T ss_pred             Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-------------------CCEEEEEE
Confidence            332 333333332   235666667766542   223444443  33333322                   12334444


Q ss_pred             eCCC--cEEEEECCCCeEEEEEeC-CCcCEEEEEEcCCCCEE-EEE-eC--CCeEEEEeCCCCcc
Q psy226          311 SRDK--TIKLWDVGSGSLLFTLIG-HDNWVRGVTFHPGGKYL-VSC-GD--DKTLRVWDTANKRN  368 (406)
Q Consensus       311 ~~d~--~i~lwd~~~~~~~~~~~~-h~~~v~~l~~s~~g~~l-~sg-s~--d~~i~vwd~~~~~~  368 (406)
                      ..++  .|+++|+..+.....+.. -.+.|..+...+++..+ ++. |.  -++++.+|+.+++.
T Consensus       344 ~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  344 RENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            4444  488999983444444332 23345666655655543 332 22  25677788877653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.91  E-value=0.016  Score=52.38  Aligned_cols=223  Identities=17%  Similarity=0.171  Sum_probs=124.8

Q ss_pred             EcCCCC-EEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe----c
Q psy226          114 FHPVFS-LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ----G  188 (406)
Q Consensus       114 ~~p~~~-~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~----~  188 (406)
                      |.|+.. ++.+--..+.|.-||..+++... +. +.+.+.++..-..+..|+++..  -+.+++.+++.....+.    +
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~  107 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG  107 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence            566655 55666677888888887765332 21 2334455544444555555433  35667765544322221    1


Q ss_pred             C-CcceEEEEEecCCCEEEEEeC-----C----CcEEEEEcC-CCeEEEEeecCCccEEEEEECCCCCEEEEEeC-CCeE
Q psy226          189 H-DHNVTGVAFLPNSDFVLSASR-----D----KTIKMWEVA-TGYCVKTLTGHREWVRQIKVSPDGTLLASCSN-DHTA  256 (406)
Q Consensus       189 h-~~~v~~~~~~p~~~~l~s~s~-----d----~~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~v  256 (406)
                      . ....+.+...|+|.+.++...     .    ..-.+|-+. .+..++.+..+-..-+.|+||||++.|..+.. .+.|
T Consensus       108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i  187 (307)
T COG3386         108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRI  187 (307)
T ss_pred             CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeE
Confidence            1 134556788888887665433     1    112455554 56666666666666788999999987766654 4778


Q ss_pred             EEEeCCCccceeEEecCCceEEEEEe--CCCCCccccccccCCCCCCCCCCEEEEEeCCC-cEEEEECCCCeEEEEEeCC
Q psy226          257 RVWSLATKETKAELRGHDHTVECVAW--APGVASESISEAAGRPPGQGGGPYLATGSRDK-TIKLWDVGSGSLLFTLIGH  333 (406)
Q Consensus       257 ~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~lwd~~~~~~~~~~~~h  333 (406)
                      .-|++....    ...... ...+.+  .|+.... +       ..+.+|.+.+++..+| .|..|+.. |+++..+.-.
T Consensus       188 ~r~~~d~~~----g~~~~~-~~~~~~~~~~G~PDG-~-------~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         188 HRYDLDPAT----GPIGGR-RGFVDFDEEPGLPDG-M-------AVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             EEEecCccc----CccCCc-ceEEEccCCCCCCCc-e-------EEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence            888775310    000000 111111  1111000 0       0123456665555554 89999987 8888887776


Q ss_pred             CcCEEEEEEc-CCCCEEEEEeC
Q psy226          334 DNWVRGVTFH-PGGKYLVSCGD  354 (406)
Q Consensus       334 ~~~v~~l~~s-~~g~~l~sgs~  354 (406)
                      ...+++++|- |+.+.|+..+.
T Consensus       254 ~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         254 VKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCCCccceEeCCCcCEEEEEec
Confidence            6778888883 45566655443

>smart00320 WD40 WD40 repeats

Probab=97.88  E-value=5.7e-05  Score=44.26  Aligned_cols=39  Identities=54%  Similarity=0.921  Sum_probs=34.5

Q ss_pred             CeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy226          324 GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD  362 (406)
Q Consensus       324 ~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd  362 (406)
                      ++++..+..|...|.++.|+|.+.++++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.87  E-value=0.012  Score=56.02  Aligned_cols=220  Identities=13%  Similarity=0.144  Sum_probs=112.4

Q ss_pred             cccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEE
Q psy226          147 HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVK  226 (406)
Q Consensus       147 h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~  226 (406)
                      ..-....+.++|+|+.+++ +.||...|+..........     +.-...+|.+.++ +++-...++|.++.--.....+
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccce
Confidence            3345789999999999988 5577788887554443222     2344578888544 5666668889996322222222


Q ss_pred             EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCE
Q psy226          227 TLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPY  306 (406)
Q Consensus       227 ~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (406)
                      .+... ..+..+-.   |.+|...+.+ .|.+||+.+++.+..+...  +|..+.|++                  ++.+
T Consensus       104 ~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~------------------~g~~  158 (443)
T PF04053_consen  104 SIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD------------------DGEL  158 (443)
T ss_dssp             ----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T------------------TSSE
T ss_pred             EEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC------------------CCCE
Confidence            33221 12333322   7777777655 8999999998888777533  488999997                  4667


Q ss_pred             EEEEeCCCcEEEEECCCC---------e--EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc
Q psy226          307 LATGSRDKTIKLWDVGSG---------S--LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH  375 (406)
Q Consensus       307 l~s~~~d~~i~lwd~~~~---------~--~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h  375 (406)
                      ++..+.+ .+.+++....         -  ....+..-...|.+.+|..+ -+++|...  .|+.+  -.|.. .++..-
T Consensus       159 val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~--~lkYl--~~Ge~-~~i~~l  231 (443)
T PF04053_consen  159 VALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN--HLKYL--VNGET-GIIAHL  231 (443)
T ss_dssp             EEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT--EEEEE--ETTEE-EEEEE-
T ss_pred             EEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC--eEEEE--EcCCc-ceEEEc
Confidence            7777655 5777664322         0  11122111446788888766 45555443  66653  22321 222222


Q ss_pred             cceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          376 SHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       376 ~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ..++.=+...+..+.|.....|+.|..+.+
T Consensus       232 d~~~yllgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  232 DKPLYLLGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred             CCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence            345566667776677777778888776653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.83  E-value=0.017  Score=50.35  Aligned_cols=182  Identities=16%  Similarity=0.228  Sum_probs=104.0

Q ss_pred             EeccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcEEEEeccc-ccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          101 ALSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYERALHGH-LDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~-~latgs~dg~v~vwd~~~~~~~~~~~~h-~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      .+.|-...+..+.|+|+.. ++++....+.|...+. +|+.++.+.-. .+...+|++..++.++++--.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4667677899999999855 6667777888888886 47777776533 3567889998888777776678999998873


Q ss_pred             CC----e--EEEEEe-----cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC---CeEEEE--ee------cCCccEE
Q psy226          179 TY----Q--CLKTMQ-----GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT---GYCVKT--LT------GHREWVR  236 (406)
Q Consensus       179 ~~----~--~~~~~~-----~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~---~~~~~~--~~------~~~~~v~  236 (406)
                      ..    .  ....+.     .++..+-+++|.|.++.|+.+-......++.+..   ...+..  ..      .....+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            21    1  111121     2455689999999988877777776777776653   222211  11      1233467


Q ss_pred             EEEECCCC-CEEEEEeCCCeEEEEeCCCccceeEEecCC---------ceEEEEEeCC
Q psy226          237 QIKVSPDG-TLLASCSNDHTARVWSLATKETKAELRGHD---------HTVECVAWAP  284 (406)
Q Consensus       237 ~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~  284 (406)
                      .++++|.. .+++-...++.|..+| ..++.+..+.-..         ...+.+++.+
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~  231 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP  231 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence            88898865 4556666788888888 4455444332111         2356677665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.82  E-value=0.014  Score=53.75  Aligned_cols=209  Identities=18%  Similarity=0.293  Sum_probs=118.9

Q ss_pred             cEEEEeCCCCeEEEEEecC-CcceEEEEEec---C----CCEEEEEeC----------CCcEEEEEcCCC----eEEEEe
Q psy226          171 SLKLWDMSTYQCLKTMQGH-DHNVTGVAFLP---N----SDFVLSASR----------DKTIKMWEVATG----YCVKTL  228 (406)
Q Consensus       171 ~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p---~----~~~l~s~s~----------d~~i~iwd~~~~----~~~~~~  228 (406)
                      .|++.|..+++.+.++.-. ...+.+++...   +    ..+++.|..          .|.|.++++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            5888888887776655432 23344444322   2    357776653          288999999884    223222


Q ss_pred             --ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEec--CCceEEEEEeCCCCCccccccccCCCCCCCCC
Q psy226          229 --TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRG--HDHTVECVAWAPGVASESISEAAGRPPGQGGG  304 (406)
Q Consensus       229 --~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (406)
                        ....++|.+++-- ++. ++.+. ++.|.+|++...+.......  ....+.++...                    +
T Consensus        83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--------------------~  139 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--------------------K  139 (321)
T ss_dssp             EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--------------------T
T ss_pred             EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--------------------c
Confidence              2346778888765 444 44433 58999999987662221111  11234444332                    4


Q ss_pred             CEEEEEeCCCcEEEEECCC-CeEEEEE--eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------Cc-cceee-
Q psy226          305 PYLATGSRDKTIKLWDVGS-GSLLFTL--IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN-------KR-NMKTL-  372 (406)
Q Consensus       305 ~~l~s~~~d~~i~lwd~~~-~~~~~~~--~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~-------~~-~~~~l-  372 (406)
                      .+++.|...+.+.++.... +..+..+  .....+++++.|-++++.++.+..+|.+.++....       +. .+... 
T Consensus       140 ~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~  219 (321)
T PF03178_consen  140 NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERIS  219 (321)
T ss_dssp             TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEE
T ss_pred             cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEE
Confidence            5888998888888874432 2322222  22456789999987778999999999999997652       11 12111 


Q ss_pred             ccc-cceEEEE---EEeCC--C------CEEEEeeCCCeEEE
Q psy226          373 EAH-SHFVTSL---DFHRA--H------PYVVTGSVDKTVKV  402 (406)
Q Consensus       373 ~~h-~~~v~~l---~~~~~--~------~~l~sgs~Dg~v~i  402 (406)
                      ..| ...|+++   .+.|.  +      +.++-++.+|.|-.
T Consensus       220 ~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  220 SFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             EEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             EEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            222 3457777   55552  2      24777888998763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=0.031  Score=52.61  Aligned_cols=254  Identities=19%  Similarity=0.219  Sum_probs=151.6

Q ss_pred             EEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCE-EEE
Q psy226          130 IRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSA-DMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDF-VLS  207 (406)
Q Consensus       130 v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~-d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s  207 (406)
                      +.+++..+......+.-+. ....+.+.+++..+..... ...+...+............-...-.++..++.+.. .+.
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~   91 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT   91 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence            6666666655554444332 5566788888865444332 224555544421111111111122346777887774 445


Q ss_pred             EeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC---CCeEEEEeCCCccceeEEecCCceEEEEEeCC
Q psy226          208 ASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN---DHTARVWSLATKETKAELRGHDHTVECVAWAP  284 (406)
Q Consensus       208 ~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  284 (406)
                      ...+..|.+.|..+........--. ....++++|+++.+..+..   ++++.+.|-.+.........-..+ ..+++.|
T Consensus        92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p  169 (381)
T COG3391          92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP  169 (381)
T ss_pred             cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence            5556899999987776666554332 4567999999977766554   688999998877766654333333 5666666


Q ss_pred             CCCccccccccCCCCCCCCCC-EEEEEeCCCcEEEEECCCCeEEE-E---EeCCCcCEEEEEEcCCCCEEEEEeCC---C
Q psy226          285 GVASESISEAAGRPPGQGGGP-YLATGSRDKTIKLWDVGSGSLLF-T---LIGHDNWVRGVTFHPGGKYLVSCGDD---K  356 (406)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~lwd~~~~~~~~-~---~~~h~~~v~~l~~s~~g~~l~sgs~d---~  356 (406)
                      .                  |. ..++-..++.|.+.|........ .   ...-......+.++|+|.++...-..   +
T Consensus       170 ~------------------g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~  231 (381)
T COG3391         170 D------------------GNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN  231 (381)
T ss_pred             C------------------CCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence            3                  44 34444578899999976655442 1   11122334678999999976654433   5


Q ss_pred             eEEEEeCCCCcccee-eccccceEEEEEEeCCCCEEEEee-CCCeEEEee
Q psy226          357 TLRVWDTANKRNMKT-LEAHSHFVTSLDFHRAHPYVVTGS-VDKTVKVWE  404 (406)
Q Consensus       357 ~i~vwd~~~~~~~~~-l~~h~~~v~~l~~~~~~~~l~sgs-~Dg~v~iw~  404 (406)
                      .+.+.|..++..... +..-...-..+..+|++.++.+.. ..+.|.+-|
T Consensus       232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid  281 (381)
T COG3391         232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVID  281 (381)
T ss_pred             eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEe
Confidence            899999888766544 211111345678899998776653 235555443

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=97.81  E-value=4e-05  Score=41.38  Aligned_cols=27  Identities=48%  Similarity=0.827  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHhcChHHHHHHHHhhc
Q psy226            9 EELNKAVADYLLSNGYLSALEGFKKDA   35 (406)
Q Consensus         9 ~~l~~~~~~~~~~~~~~~~~~~~~~~~   35 (406)
                      ++||.+|++||.++||.+++++|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            589999999999999999999999875

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>smart00320 WD40 WD40 repeats

Probab=97.81  E-value=5e-05  Score=44.52  Aligned_cols=38  Identities=37%  Similarity=0.607  Sum_probs=33.5

Q ss_pred             ccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          367 RNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       367 ~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      +....+..|...|.++.|++.+.++++++.||.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34556677888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640|consensus

Probab=97.80  E-value=0.00012  Score=69.31  Aligned_cols=93  Identities=14%  Similarity=0.203  Sum_probs=74.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCee-eEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQ-DIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~-~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      ...|..+.|+|.-.++|++..+|.|.+.-++ -+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|++++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3457889999999999999999999998877 455667776777777 99999999999999999999999999877654


Q ss_pred             EE-ecCCcceEEEEEe
Q psy226          185 TM-QGHDHNVTGVAFL  199 (406)
Q Consensus       185 ~~-~~h~~~v~~~~~~  199 (406)
                      .. .....+|.++-|.
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            42 1234456666665

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.79  E-value=0.026  Score=50.97  Aligned_cols=252  Identities=14%  Similarity=0.127  Sum_probs=138.7

Q ss_pred             EEEcCCCCEEEEEe----------CCCcEEEEEcCCCcEEEEe--cc-cc----cCeeeEEECCCCCEEEEEe--CCCcE
Q psy226          112 VIFHPVFSLMASCS----------EDATIRLWDYETGEYERAL--HG-HL----DSVQDIAFDQSGKLLVSCS--ADMSL  172 (406)
Q Consensus       112 v~~~p~~~~latgs----------~dg~v~vwd~~~~~~~~~~--~~-h~----~~V~~l~~~~~g~~l~sgs--~d~~i  172 (406)
                      +.++|+++.+++++          .+..|.+||..+-.....+  .. |.    .....++++.+|++++...  --.+|
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV  120 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV  120 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence            56799999888753          3456999999998665533  32 11    2334578899999887653  45679


Q ss_pred             EEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC-CCeEEEEe----ecCCccE-EEEEECCCCCE
Q psy226          173 KLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA-TGYCVKTL----TGHREWV-RQIKVSPDGTL  246 (406)
Q Consensus       173 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~-~~~~~~~~----~~~~~~v-~~l~~~~~~~~  246 (406)
                      .|-|+...+.+..+...  .+..+--.++ +-+.+-+.||++.-..+. .|+.....    ....+++ ..-++...+..
T Consensus       121 tVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~  197 (342)
T PF06433_consen  121 TVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR  197 (342)
T ss_dssp             EEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred             EEEECCCCceeeeecCC--CEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence            99999988887766432  2222222222 457777889999888886 45443221    1111211 12233344445


Q ss_pred             EEEEeCCCeEEEEeCCCccceeE--EecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe--CCC-------c
Q psy226          247 LASCSNDHTARVWSLATKETKAE--LRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS--RDK-------T  315 (406)
Q Consensus       247 l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~-------~  315 (406)
                      ++--+..|.|+-.|+........  ...-...-..-.|.|+..-..    +.+   ...+.+.+.-.  .++       .
T Consensus       198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~----A~~---~~~~rlyvLMh~g~~gsHKdpgte  270 (342)
T PF06433_consen  198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI----AYH---AASGRLYVLMHQGGEGSHKDPGTE  270 (342)
T ss_dssp             EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E----EEE---TTTTEEEEEEEE--TT-TTS-EEE
T ss_pred             EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee----eec---cccCeEEEEecCCCCCCccCCceE
Confidence            55577888888888765432110  000000000001222210000    000   00122221111  111       4


Q ss_pred             EEEEECCCCeEEEEEeCCCcCEEEEEEcCCCC-EEEEE-eCCCeEEEEeCCCCccceeecc
Q psy226          316 IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK-YLVSC-GDDKTLRVWDTANKRNMKTLEA  374 (406)
Q Consensus       316 i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~-~l~sg-s~d~~i~vwd~~~~~~~~~l~~  374 (406)
                      |-++|+.+++.+..+.- ...+.+|..+.+.+ .|++. ..++.+.|||..+++.++++..
T Consensus       271 VWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  271 VWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            88889999999988763 23477899998876 55554 4579999999999998888764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.79  E-value=0.022  Score=53.12  Aligned_cols=228  Identities=20%  Similarity=0.286  Sum_probs=123.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-c-------c---------ccCeeeEEECCCCCEEEEEeC
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-G-------H---------LDSVQDIAFDQSGKLLVSCSA  168 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~-------h---------~~~V~~l~~~~~g~~l~sgs~  168 (406)
                      ...+....|+|+|+.+|-.. ++.|.+++..++...+... |       -         .+.-..+.|+|||++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            45677889999999999886 5789999988875443222 2       0         112356889999999887543


Q ss_pred             C-CcEEEE-----------------------------------eCCCCeEEE--EE---ecCCcceEEEEEecCCCEEEE
Q psy226          169 D-MSLKLW-----------------------------------DMSTYQCLK--TM---QGHDHNVTGVAFLPNSDFVLS  207 (406)
Q Consensus       169 d-~~i~vw-----------------------------------d~~~~~~~~--~~---~~h~~~v~~~~~~p~~~~l~s  207 (406)
                      | ..|+.+                                   |+.+++...  ..   ..-...+..+.|.++++.++.
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            3 333333                                   222222110  00   112345788999999883333


Q ss_pred             --EeCCC---cEEEEEcCCCeEEEEee-cCCccE---EEEEEC-CCCC-EEEEEeCCCeEEEE--eCCCccceeEEecCC
Q psy226          208 --ASRDK---TIKMWEVATGYCVKTLT-GHREWV---RQIKVS-PDGT-LLASCSNDHTARVW--SLATKETKAELRGHD  274 (406)
Q Consensus       208 --~s~d~---~i~iwd~~~~~~~~~~~-~~~~~v---~~l~~~-~~~~-~l~s~~~d~~v~vw--d~~~~~~~~~~~~~~  274 (406)
                        .+++.   .+.+.|..++.+..... ....||   ....+. +++. ++.....||.-+|+  +...+. ...+....
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~  279 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGD  279 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence              44443   35667877765433332 233343   245554 5554 44555577765555  444433 33444445


Q ss_pred             ceEEE-EEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC----cEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEE
Q psy226          275 HTVEC-VAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK----TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYL  349 (406)
Q Consensus       275 ~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l  349 (406)
                      ..|.. +.|.+.                 ++.+.++|..++    .|..-++..+..+..+......-..+.|||+|+++
T Consensus       280 ~~V~~i~~~d~~-----------------~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~  342 (353)
T PF00930_consen  280 WEVTSILGWDED-----------------NNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYY  342 (353)
T ss_dssp             S-EEEEEEEECT-----------------SSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEE
T ss_pred             eeecccceEcCC-----------------CCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEE
Confidence            55643 455543                 233445555432    45555666234444555433333689999999988


Q ss_pred             EEE
Q psy226          350 VSC  352 (406)
Q Consensus       350 ~sg  352 (406)
                      +-.
T Consensus       343 v~~  345 (353)
T PF00930_consen  343 VDT  345 (353)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.76  E-value=0.028  Score=50.35  Aligned_cols=239  Identities=15%  Similarity=0.156  Sum_probs=126.1

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCC-CcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE---------
Q psy226          116 PVFSLMASCSEDATIRLWDYET-GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKT---------  185 (406)
Q Consensus       116 p~~~~latgs~dg~v~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~---------  185 (406)
                      ..++.|+.|..+| +.+++... ....+..  +...|..+...++-+.|++- .|+.+.++++........         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEE-cCCccEEEEchhhcccccccccccccc
Confidence            3567899999988 99999833 3333322  23349999998877766655 359999999875433221         


Q ss_pred             -----EecCCcceEEEE--EecCCCEEEEEeCCCcEEEEEcCCC-----eEEEEeecCCccEEEEEECCCCCEEEEEeCC
Q psy226          186 -----MQGHDHNVTGVA--FLPNSDFVLSASRDKTIKMWEVATG-----YCVKTLTGHREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       186 -----~~~h~~~v~~~~--~~p~~~~l~s~s~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                           .......+...+  -.+.+...+.....++|.+|.....     ...+.+. -.+.+..++|.  ++.++.|..+
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence                 011122333333  1123334444445558888877542     2334443 23667888887  5567776644


Q ss_pred             CeEEEEeCCCccceeEEecCCceEEEEEeCCCC-CccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE-EEe
Q psy226          254 HTARVWSLATKETKAELRGHDHTVECVAWAPGV-ASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF-TLI  331 (406)
Q Consensus       254 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~-~~~  331 (406)
                       ...+.|+.++.....+......   ..+.... ....+...     .-.++.+|++ . |..-.+.|. .|...+ ...
T Consensus       158 -~f~~idl~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~e~Ll~-~-~~~g~fv~~-~G~~~r~~~i  225 (275)
T PF00780_consen  158 -GFYLIDLNTGSPSELLDPSDSS---SSFKSRNSSSKPLGIF-----QLSDNEFLLC-Y-DNIGVFVNK-NGEPSRKSTI  225 (275)
T ss_pred             -ceEEEecCCCCceEEeCccCCc---chhhhcccCCCceEEE-----EeCCceEEEE-e-cceEEEEcC-CCCcCcccEE
Confidence             4778888865543332211111   0000000 00000000     0012344443 2 222233333 443332 111


Q ss_pred             CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecccc
Q psy226          332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS  376 (406)
Q Consensus       332 ~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~  376 (406)
                      .-...+.++++.  ..||+..+. +.|.||++.+++.++++...+
T Consensus       226 ~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~  267 (275)
T PF00780_consen  226 QWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLPN  267 (275)
T ss_pred             EcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence            122345566663  458877666 459999999999988887543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.70  E-value=0.0065  Score=57.61  Aligned_cols=194  Identities=19%  Similarity=0.215  Sum_probs=105.8

Q ss_pred             CcEEEEecccccCeeeEEECCCCCEEEEEe---CC-CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEE-EEeCCC
Q psy226          138 GEYERALHGHLDSVQDIAFDQSGKLLVSCS---AD-MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVL-SASRDK  212 (406)
Q Consensus       138 ~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs---~d-~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~  212 (406)
                      |.....+..-...+..-.|+|++..++-.+   .. ..+.++|+.+++....+. ....-..-+|+|+|+.|+ +...|+
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg  260 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG  260 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence            333444444455667778999987665432   22 358889998876544333 223334578999998655 556676


Q ss_pred             c--EEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC-CCe--EEEEeCCCccceeEEecCCceEEEEEeCCCCC
Q psy226          213 T--IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN-DHT--ARVWSLATKETKAELRGHDHTVECVAWAPGVA  287 (406)
Q Consensus       213 ~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  287 (406)
                      .  |.+.|+.++...+ +..-...-..=.|+|||+.++-.+. .|.  |.+.+...... ..+......-..-.|     
T Consensus       261 ~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~-----  333 (425)
T COG0823         261 SPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVW-----  333 (425)
T ss_pred             CccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccC-----
Confidence            5  5556777665333 4433333335678999998876654 444  44444443332 111111111112222     


Q ss_pred             ccccccccCCCCCCCCCCEEEEEeC-CCc--EEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEe
Q psy226          288 SESISEAAGRPPGQGGGPYLATGSR-DKT--IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCG  353 (406)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~l~s~~~-d~~--i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs  353 (406)
                                   .++|.+++..+. +|.  |.+.|+.++..+..+. +......-+|.|+|+.+...+
T Consensus       334 -------------SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         334 -------------SPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             -------------CCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence                         335677766664 344  6666766655333222 222233446778887765443

>KOG3621|consensus

Probab=97.62  E-value=0.00075  Score=64.99  Aligned_cols=116  Identities=15%  Similarity=0.103  Sum_probs=87.1

Q ss_pred             ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEE
Q psy226          148 LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK-TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVK  226 (406)
Q Consensus       148 ~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~  226 (406)
                      ...|.--+++..+++++.|+.-|.+.+|+-..++... ...+-...+..+..+++..+++.|+..|.|.++.+..+....
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            3344444566778999999999999999977655332 222334456667788888888899999999999876543211


Q ss_pred             -----E-eecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy226          227 -----T-LTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT  263 (406)
Q Consensus       227 -----~-~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~  263 (406)
                           . -+.|...|++++|++++..+.+|...|+|.+-.+.+
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                 1 124788999999999999999999999999988876

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.60  E-value=0.069  Score=50.74  Aligned_cols=191  Identities=11%  Similarity=0.139  Sum_probs=99.2

Q ss_pred             cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe------EEEEEecCCcceEEEEEecCC
Q psy226          129 TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ------CLKTMQGHDHNVTGVAFLPNS  202 (406)
Q Consensus       129 ~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~p~~  202 (406)
                      .|.||+.... .+..+.--.+.|.++.|+.+ ..|+.-..||+++++|+....      .+....-.+..+....+..+|
T Consensus        62 ~I~iys~sG~-ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSSGK-LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCCCC-EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            4899987654 44444433389999999885 456667799999999986322      011111111122222333344


Q ss_pred             CEEEEEeCCCcEEEEE-cCCCeEEEEe---e-------cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe
Q psy226          203 DFVLSASRDKTIKMWE-VATGYCVKTL---T-------GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR  271 (406)
Q Consensus       203 ~~l~s~s~d~~i~iwd-~~~~~~~~~~---~-------~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  271 (406)
                      -.+++  .++.+.+.+ .......+.+   .       .+........++.+....+....++.+.+.+-.....   + 
T Consensus       140 ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-  213 (410)
T PF04841_consen  140 IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-  213 (410)
T ss_pred             EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-
Confidence            33333  333333332 2111111111   0       0111111123445555556666666666444322111   1 


Q ss_pred             cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC-CcCEEEEEEcCC
Q psy226          272 GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH-DNWVRGVTFHPG  345 (406)
Q Consensus       272 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h-~~~v~~l~~s~~  345 (406)
                      ....++..++.+|                  ++.++|.-..+|.+.+....-.+.+..+.-. ......+.|.-+
T Consensus       214 ~~~~~i~~iavSp------------------ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~  270 (410)
T PF04841_consen  214 DSDGPIIKIAVSP------------------NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN  270 (410)
T ss_pred             cCCCCeEEEEECC------------------CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence            1234678888887                  5778888888899988876555555554433 334556666543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.60  E-value=0.015  Score=55.14  Aligned_cols=157  Identities=19%  Similarity=0.136  Sum_probs=93.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEE---eCC-CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEE-EeCCCc--EEEEeC
Q psy226          105 HRSPVIKVIFHPVFSLMASC---SED-ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVS-CSADMS--LKLWDM  177 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latg---s~d-g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~s-gs~d~~--i~vwd~  177 (406)
                      -...+..-+|+|++..++--   ... ..+.++|+.+++....+. ..+.-..-+|+|||+.|+- ...|+.  |.+.|+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            34556667788888765533   222 458999999987665554 2233445689999987764 445665  555577


Q ss_pred             CCCeEEEEEecCCcceEEEEEecCCCEEEEEeC-CCc--EEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCC-
Q psy226          178 STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR-DKT--IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSND-  253 (406)
Q Consensus       178 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-d~~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-  253 (406)
                      .+.+. ..+..-...-..-.|+|+|+.++-.++ .|.  |.+.|...+.. ..+......-..-.++|||.+++..+.. 
T Consensus       270 ~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~  347 (425)
T COG0823         270 DGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSG  347 (425)
T ss_pred             CCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccC
Confidence            66553 334333333336779999998776554 443  56666665543 2222222211256789999999887743 


Q ss_pred             Ce--EEEEeCCCc
Q psy226          254 HT--ARVWSLATK  264 (406)
Q Consensus       254 ~~--v~vwd~~~~  264 (406)
                      |.  |.+.|+.+.
T Consensus       348 g~~~i~~~~~~~~  360 (425)
T COG0823         348 GQWDIDKNDLASG  360 (425)
T ss_pred             CceeeEEeccCCC
Confidence            33  444444433

>KOG4640|consensus

Probab=97.59  E-value=0.00037  Score=66.17  Aligned_cols=91  Identities=16%  Similarity=0.252  Sum_probs=74.8

Q ss_pred             CeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceE-EEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q psy226          150 SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVT-GVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL  228 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~  228 (406)
                      .|.-+.|+|.-.++|.+..+|.+.+..+. .+.+.++..|..+++ +++|.|||+.|+.|-.||+|++.|+.++..+..+
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            46678999999999999999999999987 788888887888888 9999999999999999999999999998776653


Q ss_pred             e-cCCccEEEEEEC
Q psy226          229 T-GHREWVRQIKVS  241 (406)
Q Consensus       229 ~-~~~~~v~~l~~~  241 (406)
                      . .....|.++-|+
T Consensus       101 ~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  101 LFSVETDISKGIWD  114 (665)
T ss_pred             ccccccchheeecc
Confidence            1 122344555554

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.50  E-value=0.12  Score=50.88  Aligned_cols=148  Identities=14%  Similarity=0.129  Sum_probs=90.5

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEecc--ccc--CeeeEEECCCCCEEEEEeC------CCcEEEEeCCCCeEEEEEec
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHG--HLD--SVQDIAFDQSGKLLVSCSA------DMSLKLWDMSTYQCLKTMQG  188 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~--h~~--~V~~l~~~~~g~~l~sgs~------d~~i~vwd~~~~~~~~~~~~  188 (406)
                      ..++.++.|+.|.-.|..+|+..-....  +..  .+.+--.--++ .++.++.      +|.|.-+|..+++.+-.+..
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            4577788899999999999998755432  111  12211000133 4555432      68899999999887654322


Q ss_pred             CC-------------------------------cceE-EEEEecCCCEEEEEeCC-----C-----------cEEEEEcC
Q psy226          189 HD-------------------------------HNVT-GVAFLPNSDFVLSASRD-----K-----------TIKMWEVA  220 (406)
Q Consensus       189 h~-------------------------------~~v~-~~~~~p~~~~l~s~s~d-----~-----------~i~iwd~~  220 (406)
                      -.                               ..++ .+++.|..++++.+...     +           +|.-.|++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence            10                               0111 24566666666655421     2           56677889


Q ss_pred             CCeEEEEeec--CCcc-------EEEEEECCCCC---EEEEEeCCCeEEEEeCCCccce
Q psy226          221 TGYCVKTLTG--HREW-------VRQIKVSPDGT---LLASCSNDHTARVWSLATKETK  267 (406)
Q Consensus       221 ~~~~~~~~~~--~~~~-------v~~l~~~~~~~---~l~s~~~d~~v~vwd~~~~~~~  267 (406)
                      ||+..-.++.  |..+       ..-+.+..+|+   .++.+..+|.+.+.|-.+++.+
T Consensus       280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            9988776654  2211       12233334666   7889999999999999888764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.44  E-value=0.0023  Score=64.34  Aligned_cols=136  Identities=17%  Similarity=0.214  Sum_probs=89.7

Q ss_pred             EeCCCcEEEEEcCCCeEEEEeecCCcc-EEEEEECC-----CCCEEEEEeCCCeEEEEeCCCccc-eeEEecCC----ce
Q psy226          208 ASRDKTIKMWEVATGYCVKTLTGHREW-VRQIKVSP-----DGTLLASCSNDHTARVWSLATKET-KAELRGHD----HT  276 (406)
Q Consensus       208 ~s~d~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~~~-----~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~----~~  276 (406)
                      ......|+-.|+.+|+.+.....|... |..++-+.     .....+.|-.+..+..||.+-... +..-..|.    ..
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence            345678999999999999988877654 54443221     123456778889999999985431 11111111    11


Q ss_pred             EEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCC
Q psy226          277 VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK  356 (406)
Q Consensus       277 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~  356 (406)
                      ..|++-.                   ...++|+|+.+|.||+||--..+.-..+.+-..+|.+|..+.||++|++.+. .
T Consensus       580 Fs~~aTt-------------------~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-t  639 (794)
T PF08553_consen  580 FSCFATT-------------------EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-T  639 (794)
T ss_pred             ceEEEec-------------------CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-c
Confidence            2222221                   3458999999999999994332333345677889999999999999987664 4


Q ss_pred             eEEEEeC
Q psy226          357 TLRVWDT  363 (406)
Q Consensus       357 ~i~vwd~  363 (406)
                      .+.++++
T Consensus       640 yLlLi~t  646 (794)
T PF08553_consen  640 YLLLIDT  646 (794)
T ss_pred             eEEEEEE
Confidence            5666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.43  E-value=0.032  Score=52.41  Aligned_cols=172  Identities=12%  Similarity=0.132  Sum_probs=98.3

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE--ecc------cccCeeeEEEC-----CCC---CE
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERA--LHG------HLDSVQDIAFD-----QSG---KL  162 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~--~~~------h~~~V~~l~~~-----~~g---~~  162 (406)
                      ...+....++|++++.+ +--++|.|..+|.+.|.|++....+..  +..      ....|+++.|.     .|+   -.
T Consensus        79 ~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   79 LTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             EEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             hhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            34566678999999997 556999999999999999988776544  222      23457788775     233   47


Q ss_pred             EEEEeCCCcEEEEeCC--C-Ce----EEEEEecCCcceEEEE-EecC-----------------C---CEEEEEeCCCcE
Q psy226          163 LVSCSADMSLKLWDMS--T-YQ----CLKTMQGHDHNVTGVA-FLPN-----------------S---DFVLSASRDKTI  214 (406)
Q Consensus       163 l~sgs~d~~i~vwd~~--~-~~----~~~~~~~h~~~v~~~~-~~p~-----------------~---~~l~s~s~d~~i  214 (406)
                      |++|.+.|.+.+|.+-  . +.    .......+.++|..+. |+.+                 +   +-++....+..+
T Consensus       158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i  237 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI  237 (395)
T ss_dssp             EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence            8899999999999763  1 11    1122224556666655 3222                 1   123444457789


Q ss_pred             EEEEcCCCeEEEEeecCCccEEEEEE-----CCCCCEEEEEeCCCeEEEEeCCCccceeEEe
Q psy226          215 KMWEVATGYCVKTLTGHREWVRQIKV-----SPDGTLLASCSNDHTARVWSLATKETKAELR  271 (406)
Q Consensus       215 ~iwd~~~~~~~~~~~~~~~~v~~l~~-----~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~  271 (406)
                      +++...+.+..+........+..+.+     ...+..|++-..+|.++++.+..-+.+..+.
T Consensus       238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~  299 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS  299 (395)
T ss_dssp             EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred             EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence            99998877665544432223333444     2356678888899999999998766655443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.40  E-value=0.05  Score=54.03  Aligned_cols=183  Identities=18%  Similarity=0.242  Sum_probs=96.6

Q ss_pred             cCeeeEEECCCCCEEEEEe------CCCcEEEE--eCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC---------
Q psy226          149 DSVQDIAFDQSGKLLVSCS------ADMSLKLW--DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD---------  211 (406)
Q Consensus       149 ~~V~~l~~~~~g~~l~sgs------~d~~i~vw--d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d---------  211 (406)
                      ..+.+.+++|+|+.++..-      .|..-.||  +.. +.......+.  ....-.|+|+|+.+++.+..         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678899999999887654      34444444  542 2222222332  37788999998877766533         


Q ss_pred             ---CcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEE---EeCCCccc-e---eEEe-cCCceEEEE
Q psy226          212 ---KTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV---WSLATKET-K---AELR-GHDHTVECV  280 (406)
Q Consensus       212 ---~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~v---wd~~~~~~-~---~~~~-~~~~~v~~~  280 (406)
                         +.+.+.++..+....   .....|..+.|+|||..++... ++.|.+   -....+.. +   ..+. .-...+..+
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence               122222333332222   2245699999999999887765 467766   33222221 0   0111 122234556


Q ss_pred             EeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC-CeEEEEEeC--CCcCEEEEEEcCCCCEEEEEeCCCe
Q psy226          281 AWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS-GSLLFTLIG--HDNWVRGVTFHPGGKYLVSCGDDKT  357 (406)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~-~~~~~~~~~--h~~~v~~l~~s~~g~~l~sgs~d~~  357 (406)
                      .|.++                  +. |+++..++.-.+|.+.- |.....+.+  ....+.+|+-+++  .|+....++.
T Consensus       503 ~W~~~------------------~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        503 DWRTG------------------DS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             eEecC------------------CE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            66652                  33 44555555444554321 221111122  2455677776653  4555566664


Q ss_pred             EE
Q psy226          358 LR  359 (406)
Q Consensus       358 i~  359 (406)
                      +.
T Consensus       562 ~~  563 (591)
T PRK13616        562 LQ  563 (591)
T ss_pred             EE
Confidence            43

>KOG2444|consensus

Probab=97.39  E-value=0.00019  Score=59.81  Aligned_cols=102  Identities=13%  Similarity=0.179  Sum_probs=69.6

Q ss_pred             CCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCcC-EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecccc-ceEE
Q psy226          304 GPYLATGSRDKTIKLWDVGS-GSLLFTLIGHDNW-VRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS-HFVT  380 (406)
Q Consensus       304 ~~~l~s~~~d~~i~lwd~~~-~~~~~~~~~h~~~-v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~-~~v~  380 (406)
                      +.-+++|+.+|.|.+|+..- +...-.+..-... .+.+.--.++.+..+++.||.||.|++...+.+.....|. ..+.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            44689999999999998752 1111111111112 2223333345678889999999999999888887777777 5666


Q ss_pred             EEEEeCCCCEEEEe--eCCCeEEEeec
Q psy226          381 SLDFHRAHPYVVTG--SVDKTVKVWEC  405 (406)
Q Consensus       381 ~l~~~~~~~~l~sg--s~Dg~v~iw~~  405 (406)
                      .+.....+.+|+..  |.|..++.|++
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcch
Confidence            66667777788877  88888888875

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.37  E-value=0.0083  Score=60.52  Aligned_cols=140  Identities=16%  Similarity=0.154  Sum_probs=93.3

Q ss_pred             EeCCCeEEEEeCCCccceeEEecCCce-EEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC-eEE
Q psy226          250 CSNDHTARVWSLATKETKAELRGHDHT-VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG-SLL  327 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~-~~~  327 (406)
                      ......|+-.|+..++.+.+...|... |..  +.|.....           +......+.|-.++.+..||.|-. ..+
T Consensus       500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~a-----------qlt~e~tflGls~n~lfriDpR~~~~k~  566 (794)
T PF08553_consen  500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFA-----------QLTNEQTFLGLSDNSLFRIDPRLSGNKL  566 (794)
T ss_pred             CCCCCceEEEecCCCcEEEEeecCCCcceeE--eccccccc-----------ccCCCceEEEECCCceEEeccCCCCCce
Confidence            345678999999999998888877643 433  34432110           011233567888899999999853 222


Q ss_pred             EEEeC----CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEe
Q psy226          328 FTLIG----HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW  403 (406)
Q Consensus       328 ~~~~~----h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw  403 (406)
                      ..-..    .....+|++-+.+| +||.||.+|.||+||....+....|.+-..+|..|+.+.||++|+..+ +..+.|.
T Consensus       567 v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi  644 (794)
T PF08553_consen  567 VDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI  644 (794)
T ss_pred             eeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence            21111    23457788877776 788999999999999543333334566788999999999999986544 4555555


Q ss_pred             e
Q psy226          404 E  404 (406)
Q Consensus       404 ~  404 (406)
                      +
T Consensus       645 ~  645 (794)
T PF08553_consen  645 D  645 (794)
T ss_pred             E
Confidence            4

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.35  E-value=0.15  Score=48.67  Aligned_cols=219  Identities=18%  Similarity=0.214  Sum_probs=112.0

Q ss_pred             CeeeEEECCCCCEEEEE-eCC----CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCC-----------c
Q psy226          150 SVQDIAFDQSGKLLVSC-SAD----MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK-----------T  213 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sg-s~d----~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-----------~  213 (406)
                      .+....++|+|+++|-+ +..    .+++++|+.+++.+..... ......+.|.++++.++....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467899999988754 333    3599999999977653211 12223499999988766554333           3


Q ss_pred             EEEEEcCCCeE--EEEeecCCc--cEEEEEECCCCCEEEEEeCC----CeEEEEeCCCc----cceeEEecCCceE-EEE
Q psy226          214 IKMWEVATGYC--VKTLTGHRE--WVRQIKVSPDGTLLASCSND----HTARVWSLATK----ETKAELRGHDHTV-ECV  280 (406)
Q Consensus       214 i~iwd~~~~~~--~~~~~~~~~--~v~~l~~~~~~~~l~s~~~d----~~v~vwd~~~~----~~~~~~~~~~~~v-~~~  280 (406)
                      |+.|++.+...  ...+.....  +...+..++++++++..+..    ..+.+.++...    .....+......+ ..+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            78888876642  233433322  25678899999987654432    34677777653    1222222222222 222


Q ss_pred             EeCCCCCccccccccCCCCCCCCCCEEEEEe---CCCcEEEEECCCCe---EEEEEeCCCc--CEEEEEEcCCCCEEE-E
Q psy226          281 AWAPGVASESISEAAGRPPGQGGGPYLATGS---RDKTIKLWDVGSGS---LLFTLIGHDN--WVRGVTFHPGGKYLV-S  351 (406)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~lwd~~~~~---~~~~~~~h~~--~v~~l~~s~~g~~l~-s  351 (406)
                      ...                   ++.+++...   .++.|.-.++....   -...+..+..  .+..+..  .+.+|+ .
T Consensus       284 ~~~-------------------~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~  342 (414)
T PF02897_consen  284 DHH-------------------GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLS  342 (414)
T ss_dssp             EEE-------------------TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEE
T ss_pred             Ecc-------------------CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEE
Confidence            211                   122222222   22455556666554   2224555554  3444443  444544 4


Q ss_pred             EeCCC--eEEEEeCCCCccceeec-cccceEEEEEEeCCCCE
Q psy226          352 CGDDK--TLRVWDTANKRNMKTLE-AHSHFVTSLDFHRAHPY  390 (406)
Q Consensus       352 gs~d~--~i~vwd~~~~~~~~~l~-~h~~~v~~l~~~~~~~~  390 (406)
                      .-.++  .|+++|+..+.....+. .-.+.|..+...+++..
T Consensus       343 ~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~  384 (414)
T PF02897_consen  343 YRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDE  384 (414)
T ss_dssp             EEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SE
T ss_pred             EEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCE
Confidence            44443  67889988333322322 22334566665555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.35  E-value=0.12  Score=47.57  Aligned_cols=270  Identities=19%  Similarity=0.253  Sum_probs=125.4

Q ss_pred             EEcCCCCE-EEEEeCCCc--EEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC
Q psy226          113 IFHPVFSL-MASCSEDAT--IRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGH  189 (406)
Q Consensus       113 ~~~p~~~~-latgs~dg~--v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h  189 (406)
                      +|.++|+. |+++..||.  +.+-|+.+++..+...+-........++++++.++-......++-.|+.+.+........
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            46778865 445555665  566689999877666544344446777888888766656678888999987765555555


Q ss_pred             CcceEEEEEec--CCCEEEEEeC----------------------CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCC-
Q psy226          190 DHNVTGVAFLP--NSDFVLSASR----------------------DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG-  244 (406)
Q Consensus       190 ~~~v~~~~~~p--~~~~l~s~s~----------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-  244 (406)
                      ...+....|..  ++..++-.-.                      ...|.--|+.+|+....+ .-..|+.-+-|+|.. 
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-~~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-EDTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-EESS-EEEEEEETTEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-ecCccccCcccCCCCC
Confidence            55555555643  3444332210                      123445567776643333 456778888899854 


Q ss_pred             CEEEEEeC---CC-eEEEEeCCCcc-ceeEEecCC--ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE-E----eC
Q psy226          245 TLLASCSN---DH-TARVWSLATKE-TKAELRGHD--HTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT-G----SR  312 (406)
Q Consensus       245 ~~l~s~~~---d~-~v~vwd~~~~~-~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~----~~  312 (406)
                      .+|+-|-.   +. .-|||-+++.. ....+..+.  ..+.---|.|+                  |..+.- +    +.
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~D------------------G~~i~y~~~~~~~~  262 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPD------------------GSTIWYDSYTPGGQ  262 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TT------------------SS-EEEEEEETTT-
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCC------------------CCEEEEEeecCCCC
Confidence            45555543   33 24677654321 122222221  12222235553                  222211 1    12


Q ss_pred             CCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCC----------------eEEEEeCCCCccceeecccc
Q psy226          313 DKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK----------------TLRVWDTANKRNMKTLEAHS  376 (406)
Q Consensus       313 d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~----------------~i~vwd~~~~~~~~~l~~h~  376 (406)
                      +..|.-+|..++.......  ..+..-+-.+++|++++-=+.|.                -|++++...++.. .+..|.
T Consensus       263 ~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~  339 (386)
T PF14583_consen  263 DFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHD  339 (386)
T ss_dssp             -EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE--
T ss_pred             ceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeecc
Confidence            3346667777765432211  12445566688998876533332                5667787665432 111111


Q ss_pred             ----------c-eEEEEEEeCCCCEEE-EeeCCCeEEEee
Q psy226          377 ----------H-FVTSLDFHRAHPYVV-TGSVDKTVKVWE  404 (406)
Q Consensus       377 ----------~-~v~~l~~~~~~~~l~-sgs~Dg~v~iw~  404 (406)
                                . .=-...|+||+++++ ++...|...||-
T Consensus       340 ~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  340 TSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             -----BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             CcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence                      1 013567999999865 555677776663

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.33  E-value=0.036  Score=41.27  Aligned_cols=100  Identities=17%  Similarity=0.196  Sum_probs=66.8

Q ss_pred             eEEEEEcC---C-CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy226          109 VIKVIFHP---V-FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       109 V~~v~~~p---~-~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      |+++++.+   + .+.|+.||.|..||+|+-.  +....+. -++.|++|.-... ..++.+..+|+|-+|+-..  .+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence            56666654   2 2689999999999999754  3344443 3467788877665 5788899999999997632  233


Q ss_pred             EEecCCcceEEEEEec-CC---CEEEEEeCCCcEE
Q psy226          185 TMQGHDHNVTGVAFLP-NS---DFVLSASRDKTIK  215 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p-~~---~~l~s~s~d~~i~  215 (406)
                      ..+. ...+.++.+.. ++   ..|++|-.+|.|-
T Consensus        76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3333 23366665544 32   2688888888764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.31  E-value=0.12  Score=46.72  Aligned_cols=260  Identities=15%  Similarity=0.212  Sum_probs=151.6

Q ss_pred             CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEecCCc-c----
Q psy226          128 ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS----------ADMSLKLWDMSTYQCLKTMQGHDH-N----  192 (406)
Q Consensus       128 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs----------~d~~i~vwd~~~~~~~~~~~~h~~-~----  192 (406)
                      +.+.|+|..+++++..+...  -.-.+..+|+++.+++++          ..-.|.+||..+.+....+.-... .    
T Consensus        17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            47999999999987776532  233466899999988754          234699999999877665543321 1    


Q ss_pred             --eEEEEEecCCCEEEEE--eCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCcccee
Q psy226          193 --VTGVAFLPNSDFVLSA--SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKA  268 (406)
Q Consensus       193 --v~~~~~~p~~~~l~s~--s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~  268 (406)
                        ...+.+++++++++..  +--.+|.|-|+..++.+..+....  +..+--++ ..-|.+-+.||.+....+.......
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEe
Confidence              1235677788876664  334568888888877766654322  11111122 2458888899999988887432222


Q ss_pred             EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEE--EeC------CCcC----
Q psy226          269 ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFT--LIG------HDNW----  336 (406)
Q Consensus       269 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~--~~~------h~~~----  336 (406)
                        ..+     .-.|.+.... .+..    +.....+..++--+.+|.|+--|+........  ..-      -.+|    
T Consensus       172 --~~~-----t~~F~~~~dp-~f~~----~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG  239 (342)
T PF06433_consen  172 --QKS-----TKVFDPDDDP-LFEH----PAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG  239 (342)
T ss_dssp             --EEE-----EEESSTTTS--B-S------EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred             --Eee-----ccccCCCCcc-cccc----cceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence              111     1244443211 1100    00001222344467788888888765543221  110      0122    


Q ss_pred             EEEEEEcCCCCEEEEE---eC-----C--CeEEEEeCCCCccceeeccccceEEEEEEeCCCC-EEEE-eeCCCeEEEee
Q psy226          337 VRGVTFHPGGKYLVSC---GD-----D--KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP-YVVT-GSVDKTVKVWE  404 (406)
Q Consensus       337 v~~l~~s~~g~~l~sg---s~-----d--~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~-~l~s-gs~Dg~v~iw~  404 (406)
                      -.-+++++....|+.-   +.     |  ..|-++|+.+++.+..+.. ...+.+|+.+.+.. +|.+ ...++.+.+||
T Consensus       240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            2346777755554442   11     2  2467779999999988874 24688999998775 6644 45689999998


Q ss_pred             c
Q psy226          405 C  405 (406)
Q Consensus       405 ~  405 (406)
                      .
T Consensus       319 ~  319 (342)
T PF06433_consen  319 A  319 (342)
T ss_dssp             T
T ss_pred             C
Confidence            6

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.27  E-value=0.095  Score=45.69  Aligned_cols=240  Identities=16%  Similarity=0.246  Sum_probs=125.9

Q ss_pred             EEEEcCCCC-EEEEEeCCCc-EEEEEcCCCcEEEEecccccC--eeeEEECCCCCEEEEEeCC-----CcEEEEeCCC-C
Q psy226          111 KVIFHPVFS-LMASCSEDAT-IRLWDYETGEYERALHGHLDS--VQDIAFDQSGKLLVSCSAD-----MSLKLWDMST-Y  180 (406)
Q Consensus       111 ~v~~~p~~~-~latgs~dg~-v~vwd~~~~~~~~~~~~h~~~--V~~l~~~~~g~~l~sgs~d-----~~i~vwd~~~-~  180 (406)
                      .++|||..+ -++-+-.-|+ ..++|..+.+...++...++.  --.=.|+|||.+|+..-+|     |.|-|||... +
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            367787654 4555555555 567888887765554322211  1123689999999887665     6799999863 4


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeC------------------CCcEEEEEcCCCeEEEEe--e--cCCccEEEE
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASR------------------DKTIKMWEVATGYCVKTL--T--GHREWVRQI  238 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~------------------d~~i~iwd~~~~~~~~~~--~--~~~~~v~~l  238 (406)
                      +.+..+..|.-.-..+.+.+||+.++.+..                  .-++.+.|..+|..+...  .  .+.-.++-+
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl  231 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL  231 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence            555666777666677889999998887643                  112333444444433221  1  234457778


Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCc--cccccccCCC-CCCCCCCEEEEEeCCCc
Q psy226          239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVAS--ESISEAAGRP-PGQGGGPYLATGSRDKT  315 (406)
Q Consensus       239 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~l~s~~~d~~  315 (406)
                      +..+||..++.|-.-|.-        .....+.+|...-..+.+.+-...  ..+....+.. .....+...+++-..+.
T Consensus       232 d~g~dgtvwfgcQy~G~~--------~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~  303 (366)
T COG3490         232 DIGRDGTVWFGCQYRGPR--------NDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR  303 (366)
T ss_pred             eeCCCCcEEEEEEeeCCC--------ccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence            888888777666443321        001111111111111111110000  0000000000 01123445556556677


Q ss_pred             EEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy226          316 IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD  362 (406)
Q Consensus       316 i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd  362 (406)
                      .-+||..+|..+....--  .+..++-  ...-++..+.+|.+.++.
T Consensus       304 ~vi~da~tG~vv~~a~l~--daaGva~--~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         304 AVIWDAATGAVVSEAALP--DAAGVAA--AKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             EEEEEcCCCcEEeccccc--cccccee--ccCceEEecCCceEEecc
Confidence            889999999876542211  1223332  222344455677887764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.15  E-value=0.2  Score=46.01  Aligned_cols=210  Identities=13%  Similarity=0.143  Sum_probs=116.8

Q ss_pred             cEEEEEcCCCcEEEEeccc-ccCeee---EEECCC----CCEEEEEeC----------CCcEEEEeCCCC----eEEEEE
Q psy226          129 TIRLWDYETGEYERALHGH-LDSVQD---IAFDQS----GKLLVSCSA----------DMSLKLWDMSTY----QCLKTM  186 (406)
Q Consensus       129 ~v~vwd~~~~~~~~~~~~h-~~~V~~---l~~~~~----g~~l~sgs~----------d~~i~vwd~~~~----~~~~~~  186 (406)
                      .|++.|..+.+....+.-. ...+.+   +.+..+    ..+|+.|..          .|.|.++++...    ..+..+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            4777777776655544322 223333   444433    467777653          288999999873    122222


Q ss_pred             --ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe-EEEEe-ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy226          187 --QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY-CVKTL-TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       187 --~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~-~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~  262 (406)
                        ....++|++++-.  +..|+++. .+.|.+|++.... ....- ......+.++..  .+++++.|..-+.+.++...
T Consensus        83 ~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEE
T ss_pred             EEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEE
Confidence              2346788888766  34455443 4789999998776 33322 222235555554  46699999988889888654


Q ss_pred             Cccc-eeEEec--CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC-------C--eEEEEE
Q psy226          263 TKET-KAELRG--HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS-------G--SLLFTL  330 (406)
Q Consensus       263 ~~~~-~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~-------~--~~~~~~  330 (406)
                      .... ...+..  ....+.++.+.++                  +..++.+..+|.+.++....       +  +.....
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~d------------------~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~  219 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLVD------------------EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERIS  219 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE-S------------------SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEE
T ss_pred             ccCCEEEEEEecCCCccEEEEEEecC------------------CcEEEEEcCCCeEEEEEECCCCcccccccccceeEE
Confidence            3221 222221  2344566666532                  24789999999999987642       2  222211


Q ss_pred             e-CCCcCEEEE---EEcC--CCC------EEEEEeCCCeEEEE
Q psy226          331 I-GHDNWVRGV---TFHP--GGK------YLVSCGDDKTLRVW  361 (406)
Q Consensus       331 ~-~h~~~v~~l---~~s~--~g~------~l~sgs~d~~i~vw  361 (406)
                      . .....|+++   ++.|  .+.      .++-++.+|.|.+.
T Consensus       220 ~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  220 SFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            1 124557776   5555  222      47778889988844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.14  E-value=0.062  Score=40.03  Aligned_cols=100  Identities=13%  Similarity=0.199  Sum_probs=64.3

Q ss_pred             eeeEEECC---CC-CEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEE
Q psy226          151 VQDIAFDQ---SG-KLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVK  226 (406)
Q Consensus       151 V~~l~~~~---~g-~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~  226 (406)
                      |+++++..   +| +.|++||.|..||+|+-.  +.+..+.. .+.|.+++-... ..++.+-.+|+|-+|+-..  .+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence            56666543   33 589999999999999754  45555543 456777777655 5688889999999997532  233


Q ss_pred             EeecCCccEEEEE-ECCC--C-CEEEEEeCCCeEE
Q psy226          227 TLTGHREWVRQIK-VSPD--G-TLLASCSNDHTAR  257 (406)
Q Consensus       227 ~~~~~~~~v~~l~-~~~~--~-~~l~s~~~d~~v~  257 (406)
                      ..+.... +.++. ++.+  | ..|++|=.+|.|-
T Consensus        76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3443333 44443 3333  3 3577777777653

>KOG2079|consensus

Probab=97.13  E-value=0.014  Score=59.29  Aligned_cols=101  Identities=20%  Similarity=0.280  Sum_probs=74.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeE-EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEE
Q psy226          159 SGKLLVSCSADMSLKLWDMSTYQC-LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQ  237 (406)
Q Consensus       159 ~g~~l~sgs~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~  237 (406)
                      .+..++.|+..|.+-..|+.+.-+ ...-..-..+|++++|+.+|..++.|-.+|.|.+||+.++...+.+..|..+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            456788888889998888764211 1111123568999999999999999999999999999999888888777665544


Q ss_pred             E---EECCCCCEEEEEeCCCeEEEEeC
Q psy226          238 I---KVSPDGTLLASCSNDHTARVWSL  261 (406)
Q Consensus       238 l---~~~~~~~~l~s~~~d~~v~vwd~  261 (406)
                      +   .+..++..+.++...|.  +|.+
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            3   34456666777776665  5654

>KOG2395|consensus

Probab=97.10  E-value=0.0091  Score=56.01  Aligned_cols=142  Identities=15%  Similarity=0.208  Sum_probs=92.0

Q ss_pred             EEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCC-------EEEEEeCCCeEEEEeCCCccc--eeEEecCCc
Q psy226          205 VLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT-------LLASCSNDHTARVWSLATKET--KAELRGHDH  275 (406)
Q Consensus       205 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-------~l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~  275 (406)
                      +.++.....++-.|++.|+.+....-+.+ |+-+.+.|+.+       .-+.|-.|..|.-||++-...  +....+|. 
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq-  426 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ-  426 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc-
Confidence            34566667788899999999988877766 77777777653       234566788899999873322  11112221 


Q ss_pred             eEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCC
Q psy226          276 TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDD  355 (406)
Q Consensus       276 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d  355 (406)
                            |.....   ++..     ......++++||.+|.||+||--..+.-..+++-..+|..|..+.+|++|+..+. 
T Consensus       427 ------y~~k~n---Fsc~-----aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-  491 (644)
T KOG2395|consen  427 ------YSTKNN---FSCF-----ATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-  491 (644)
T ss_pred             ------cccccc---ccee-----eecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-
Confidence                  111100   0000     0113458999999999999997322333456778889999999999999986664 


Q ss_pred             CeEEEEeC
Q psy226          356 KTLRVWDT  363 (406)
Q Consensus       356 ~~i~vwd~  363 (406)
                      ..+.+-++
T Consensus       492 tyLlLi~t  499 (644)
T KOG2395|consen  492 TYLLLIDT  499 (644)
T ss_pred             cEEEEEEE
Confidence            45555554

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.08  E-value=0.0011  Score=38.03  Aligned_cols=32  Identities=41%  Similarity=0.736  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHHHHhcChHHHHHHHHhhcCCC
Q psy226            7 QREELNKAVADYLLSNGYLSALEGFKKDADLP   38 (406)
Q Consensus         7 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   38 (406)
                      ++.+|+++|++||..+|+..++.+|..|+.+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            57889999999999999999999999988764

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>KOG2444|consensus

Probab=97.07  E-value=0.00062  Score=56.88  Aligned_cols=105  Identities=11%  Similarity=0.162  Sum_probs=66.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcceEE-EEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCC-ccE
Q psy226          159 SGKLLVSCSADMSLKLWDMSTYQCLKTM-QGHDHNVTG-VAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR-EWV  235 (406)
Q Consensus       159 ~g~~l~sgs~d~~i~vwd~~~~~~~~~~-~~h~~~v~~-~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-~~v  235 (406)
                      -+..+++|+.+|.|.+|+.......... ..-...|.+ +.-..++.+..+++.|+.|+.|++.-++.+.....|. .++
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~  148 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG  148 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence            3567889999999999987632211111 111112222 2222244578899999999999998887777766676 445


Q ss_pred             EEEEECCCCCEEEEE--eCCCeEEEEeCCC
Q psy226          236 RQIKVSPDGTLLASC--SNDHTARVWSLAT  263 (406)
Q Consensus       236 ~~l~~~~~~~~l~s~--~~d~~v~vwd~~~  263 (406)
                      ..+..+..++.++..  |.|..++.|++..
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchhh
Confidence            545555555666666  6677777777643

>PHA02713 hypothetical protein; Provisional

Probab=97.06  E-value=0.11  Score=51.60  Aligned_cols=71  Identities=7%  Similarity=0.012  Sum_probs=38.7

Q ss_pred             CCEEEEEeCC------CcEEEEECCC-Ce--EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCccceee
Q psy226          304 GPYLATGSRD------KTIKLWDVGS-GS--LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK--TLRVWDTANKRNMKTL  372 (406)
Q Consensus       304 ~~~l~s~~~d------~~i~lwd~~~-~~--~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~--~i~vwd~~~~~~~~~l  372 (406)
                      +.+.+.|+.+      ..+..||..+ .+  .+..+.........+.+  +|+..+.||.|+  .+..||..+.+-...-
T Consensus       464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~  541 (557)
T PHA02713        464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHIC  541 (557)
T ss_pred             CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchh
Confidence            4555666543      2366788776 32  22233222222233333  678888999888  6777887765533333


Q ss_pred             cccc
Q psy226          373 EAHS  376 (406)
Q Consensus       373 ~~h~  376 (406)
                      ..|+
T Consensus       542 ~~~~  545 (557)
T PHA02713        542 HQHS  545 (557)
T ss_pred             hhcC
Confidence            3343

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.99  E-value=0.18  Score=50.23  Aligned_cols=184  Identities=15%  Similarity=0.127  Sum_probs=96.7

Q ss_pred             CcceEEEEEecCCCEEEEEe------CCC--cEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCC-C------
Q psy226          190 DHNVTGVAFLPNSDFVLSAS------RDK--TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSND-H------  254 (406)
Q Consensus       190 ~~~v~~~~~~p~~~~l~s~s------~d~--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-~------  254 (406)
                      ...+.+.+++|+|+.++...      .|.  .|.+++.. +.......+.  ....-.|+|+|..+++.... .      
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            34678899999999876654      244  45555542 2222222332  26678899999888777543 2      


Q ss_pred             -----eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEE---EECCCCeE
Q psy226          255 -----TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL---WDVGSGSL  326 (406)
Q Consensus       255 -----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~l---wd~~~~~~  326 (406)
                           .+.+.++..+....   .....|..+.|+|+                  |..++.-. ++.|.+   -....|..
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpD------------------G~RiA~i~-~g~v~Va~Vvr~~~G~~  483 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRD------------------GVRAAMII-GGKVYLAVVEQTEDGQY  483 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCC------------------CCEEEEEE-CCEEEEEEEEeCCCCce
Confidence                 22222333322221   22456889999985                  44444433 355555   33333331


Q ss_pred             -E---EEE-eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cccceeecc--ccceEEEEEEeCCCCEEEEeeCCC
Q psy226          327 -L---FTL-IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN-KRNMKTLEA--HSHFVTSLDFHRAHPYVVTGSVDK  398 (406)
Q Consensus       327 -~---~~~-~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~-~~~~~~l~~--h~~~v~~l~~~~~~~~l~sgs~Dg  398 (406)
                       +   ..+ .+-...+.++.|.+++..+ .+..++...+|.+.- +.....+..  ....+.+|+=+++ . |.....+|
T Consensus       484 ~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~-iyv~~~~g  560 (591)
T PRK13616        484 ALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-T-VYVTDARA  560 (591)
T ss_pred             eecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-e-EEEEcCCc
Confidence             1   112 2223346889999998855 555444445564431 222222222  2445777777764 2 33445555


Q ss_pred             eEE
Q psy226          399 TVK  401 (406)
Q Consensus       399 ~v~  401 (406)
                      .+.
T Consensus       561 ~~~  563 (591)
T PRK13616        561 VLQ  563 (591)
T ss_pred             eEE
Confidence            443

>KOG2079|consensus

Probab=96.98  E-value=0.0026  Score=64.33  Aligned_cols=99  Identities=18%  Similarity=0.270  Sum_probs=74.0

Q ss_pred             CEEEEEeCCCcEEEEECCCC-eEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceE---E
Q psy226          305 PYLATGSRDKTIKLWDVGSG-SLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFV---T  380 (406)
Q Consensus       305 ~~l~s~~~d~~i~lwd~~~~-~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v---~  380 (406)
                      ..++.|+.-|.+-..|.... .....-..-..+|++++|+.+|.+++.|-.+|.|.+||..+++.++.+..|..+.   .
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi  179 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI  179 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence            35888888888888887543 1112222235689999999999999999999999999999999988887665554   4


Q ss_pred             EEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          381 SLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       381 ~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .+.+..++..+.++..-|.  +|.|
T Consensus       180 ~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  180 FVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEeCCCcEEEEccCCCc--eEEE
Confidence            4455666677888877775  6654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.98  E-value=0.25  Score=44.16  Aligned_cols=215  Identities=16%  Similarity=0.177  Sum_probs=120.8

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe---------
Q psy226          158 QSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL---------  228 (406)
Q Consensus       158 ~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~---------  228 (406)
                      ..++.|+.|..+| +.+++........... +...|..+...|+-+.+++-+ |+.+.++++..-......         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            4578999999998 8899883222222222 233499999999888776654 499999998654332211         


Q ss_pred             -----ecCCccEEEEE--ECCCCCEEEEEeCCCeEEEEeCCCc-----cceeEEecCCceEEEEEeCCCCCccccccccC
Q psy226          229 -----TGHREWVRQIK--VSPDGTLLASCSNDHTARVWSLATK-----ETKAELRGHDHTVECVAWAPGVASESISEAAG  296 (406)
Q Consensus       229 -----~~~~~~v~~l~--~~~~~~~l~s~~~d~~v~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  296 (406)
                           ......+...+  -.+.+...+.+...+.|.+|.+...     ....++. ....+..+.|.+            
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~------------  148 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG------------  148 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC------------
Confidence                 11222333333  1234444444555668998887653     2223332 235566777753            


Q ss_pred             CCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC------------CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          297 RPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG------------HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       297 ~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~------------h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                              ..++.|..++ ..+.|+.++.....+..            ...++..+... ++.+|++.  |..-.+-|. 
T Consensus       149 --------~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-  215 (275)
T PF00780_consen  149 --------NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-  215 (275)
T ss_pred             --------CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-
Confidence                    3566666444 78888886655333211            11234444443 45677653  222333343 


Q ss_pred             CCccc--eeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          365 NKRNM--KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       365 ~~~~~--~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .|+..  ..+.... ...++++.  .+||+.-+. +.|.||++
T Consensus       216 ~G~~~r~~~i~W~~-~p~~~~~~--~pyli~~~~-~~iEV~~~  254 (275)
T PF00780_consen  216 NGEPSRKSTIQWSS-APQSVAYS--SPYLIAFSS-NSIEVRSL  254 (275)
T ss_pred             CCCcCcccEEEcCC-chhEEEEE--CCEEEEECC-CEEEEEEC
Confidence            34333  3455443 45666663  468877665 45999886

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4499|consensus

Probab=96.88  E-value=0.22  Score=42.16  Aligned_cols=82  Identities=17%  Similarity=0.229  Sum_probs=57.4

Q ss_pred             CEEEEEeCCCcEEEEE--CCCCe-----EEEEEeCC----CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec
Q psy226          305 PYLATGSRDKTIKLWD--VGSGS-----LLFTLIGH----DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE  373 (406)
Q Consensus       305 ~~l~s~~~d~~i~lwd--~~~~~-----~~~~~~~h----~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~  373 (406)
                      .+-++-+.+-+|.-||  ..+|.     .+..+...    .-..-.++...+|...+++-..++|...|..+++.+.++.
T Consensus       171 ~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik  250 (310)
T KOG4499|consen  171 KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK  250 (310)
T ss_pred             EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE
Confidence            3455566667777777  44443     33333321    1112345566788888888889999999999999999998


Q ss_pred             cccceEEEEEEeC
Q psy226          374 AHSHFVTSLDFHR  386 (406)
Q Consensus       374 ~h~~~v~~l~~~~  386 (406)
                      --...|++++|--
T Consensus       251 lPt~qitsccFgG  263 (310)
T KOG4499|consen  251 LPTPQITSCCFGG  263 (310)
T ss_pred             cCCCceEEEEecC
Confidence            8788899999954

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.87  E-value=0.34  Score=43.96  Aligned_cols=217  Identities=13%  Similarity=0.127  Sum_probs=122.3

Q ss_pred             EECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee----
Q psy226          155 AFDQSGK-LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT----  229 (406)
Q Consensus       155 ~~~~~g~-~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~----  229 (406)
                      .|.++.. ++.+--..+.|.-|+..+++. ..+. +...+.++.....+..|+++..  .+.+++..++..+..+.    
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~  106 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED  106 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence            4555555 444445567788888776542 2332 2333444444444555655433  35667766555422221    


Q ss_pred             cC-CccEEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCC
Q psy226          230 GH-REWVRQIKVSPDGTLLASCSN-----------DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGR  297 (406)
Q Consensus       230 ~~-~~~v~~l~~~~~~~~l~s~~~-----------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  297 (406)
                      +. ....+.+...|+|.+.++...           -|.++.+|. .+.....+..+-..-..++|+|+            
T Consensus       107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpD------------  173 (307)
T COG3386         107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPD------------  173 (307)
T ss_pred             CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCC------------
Confidence            11 134567788899887665444           133444443 33444444444555667888885            


Q ss_pred             CCCCCCCCEEEEEe-CCCcEEEEECCC--C----eE-EEEEeCCCcCEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCcc
Q psy226          298 PPGQGGGPYLATGS-RDKTIKLWDVGS--G----SL-LFTLIGHDNWVRGVTFHPGGKYLVSCGDDK-TLRVWDTANKRN  368 (406)
Q Consensus       298 ~~~~~~~~~l~s~~-~d~~i~lwd~~~--~----~~-~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~-~i~vwd~~~~~~  368 (406)
                            ++.|+.+- ..+.|.-|++..  +    +. ...+....+..-.++...+|.+-+++-.+| .|.+|+.. ++.
T Consensus       174 ------g~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l  246 (307)
T COG3386         174 ------GKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL  246 (307)
T ss_pred             ------CCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE
Confidence                  43444443 346676666541  1    11 122222345556678888888876555554 89999987 888


Q ss_pred             ceeeccccceEEEEEEeC-CCCEE-EEee
Q psy226          369 MKTLEAHSHFVTSLDFHR-AHPYV-VTGS  395 (406)
Q Consensus       369 ~~~l~~h~~~v~~l~~~~-~~~~l-~sgs  395 (406)
                      +..+......+++++|-- +.+.| +|+.
T Consensus       247 ~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         247 LGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            888877667788999864 33433 4433

>PHA02713 hypothetical protein; Provisional

Probab=96.86  E-value=0.036  Score=54.98  Aligned_cols=91  Identities=4%  Similarity=-0.091  Sum_probs=45.3

Q ss_pred             CCCEEEEEeCC------CcEEEEEcCCCcEEEEeccc--ccCeeeEEECCCCCEEEEEeCCC-----cEEEEeCCCCeEE
Q psy226          117 VFSLMASCSED------ATIRLWDYETGEYERALHGH--LDSVQDIAFDQSGKLLVSCSADM-----SLKLWDMSTYQCL  183 (406)
Q Consensus       117 ~~~~latgs~d------g~v~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~g~~l~sgs~d~-----~i~vwd~~~~~~~  183 (406)
                      ++.+.+.||.+      ..+..||..+......-.-.  ......+.  -+|++.+.|+.++     ++..||..+.+-.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            45667777754      34777887776543221111  11111222  2567777777654     4788998765322


Q ss_pred             E--EEecCCcceEEEEEecCCCEEEEEeCC
Q psy226          184 K--TMQGHDHNVTGVAFLPNSDFVLSASRD  211 (406)
Q Consensus       184 ~--~~~~h~~~v~~~~~~p~~~~l~s~s~d  211 (406)
                      .  .+.........+.+  ++...+.|+.+
T Consensus       381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~  408 (557)
T PHA02713        381 MLPDMPIALSSYGMCVL--DQYIYIIGGRT  408 (557)
T ss_pred             ECCCCCcccccccEEEE--CCEEEEEeCCC
Confidence            1  11111111222222  56666667655

>KOG2395|consensus

Probab=96.84  E-value=0.029  Score=52.80  Aligned_cols=139  Identities=16%  Similarity=0.196  Sum_probs=95.3

Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCC-------EEEEEeCCCcEEEEeCCC-Ce-EEEEEecCC
Q psy226          120 LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK-------LLVSCSADMSLKLWDMST-YQ-CLKTMQGHD  190 (406)
Q Consensus       120 ~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~-------~l~sgs~d~~i~vwd~~~-~~-~~~~~~~h~  190 (406)
                      +|.++..-..++--|++.|+.+..-.-|.+ |+-+.+.|+++       .-+.|-.|..|.-||..- +. .+.-.++|.
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            344666667788889999998888776666 77777877653       224567788899999752 22 222333332


Q ss_pred             ----cceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe-EEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy226          191 ----HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY-CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       191 ----~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~  262 (406)
                          ....|.+-. ...++++||.+|-||+||- .+. ....+.+-..+|..+..+.+|++++..+ +..+.+.++.
T Consensus       427 y~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  427 YSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             cccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence                234444443 3458999999999999997 443 3344667778899999999999876554 5567676653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.66  E-value=0.0071  Score=37.57  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=28.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDY  135 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~  135 (406)
                      ..+|.+++|+|...+||.|..+|.|.++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            457999999999999999999999999987

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.61  E-value=0.43  Score=41.75  Aligned_cols=172  Identities=14%  Similarity=0.074  Sum_probs=105.1

Q ss_pred             eEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCcEEEEeccc-ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q psy226          109 VIKVIFHPVFSLMASCSEDA--TIRLWDYETGEYERALHGH-LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKT  185 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg--~v~vwd~~~~~~~~~~~~h-~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~  185 (406)
                      .-.+.|..++.++-+.+.-|  .|+.+|..+|+......-. .---..++...+ ++..-.=.++...+||..+.+.+.+
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEEE
Confidence            34677877888888888777  6999999999876554321 111223444332 3333445788999999999998887


Q ss_pred             EecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC-----CccEEEEEECCCCCEEEEEeCCCeEEEEe
Q psy226          186 MQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH-----REWVRQIKVSPDGTLLASCSNDHTARVWS  260 (406)
Q Consensus       186 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-----~~~v~~l~~~~~~~~l~s~~~d~~v~vwd  260 (406)
                      +.- ...=++++  .+++.|+.......+.++|..+....+.+.-.     -..++.+.+- +|...|-.=....|...|
T Consensus       126 ~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id  201 (264)
T PF05096_consen  126 FPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID  201 (264)
T ss_dssp             EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             Eec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence            753 45667777  46777777667778999998887666655422     1235556664 565555555666777788


Q ss_pred             CCCccceeEEec---------------CCceEEEEEeCCC
Q psy226          261 LATKETKAELRG---------------HDHTVECVAWAPG  285 (406)
Q Consensus       261 ~~~~~~~~~~~~---------------~~~~v~~~~~~~~  285 (406)
                      ..++.....+.-               .......++|.|.
T Consensus       202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~  241 (264)
T PF05096_consen  202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE  241 (264)
T ss_dssp             TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred             CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence            887766544310               1345677888764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.59  E-value=0.68  Score=43.70  Aligned_cols=74  Identities=11%  Similarity=0.160  Sum_probs=51.6

Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccc----eEEEEEEeCC--------------CC-EEEE
Q psy226          333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSH----FVTSLDFHRA--------------HP-YVVT  393 (406)
Q Consensus       333 h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~----~v~~l~~~~~--------------~~-~l~s  393 (406)
                      ....+.+++.+|++++.++...=|+|.++|+.++..++.+++-.+    ++....-...              .. +++-
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            334578899999999988887789999999999988888876433    2222221111              11 2344


Q ss_pred             eeCCCeEEEeecC
Q psy226          394 GSVDKTVKVWECR  406 (406)
Q Consensus       394 gs~Dg~v~iw~~~  406 (406)
                      .-.-|.|.||.++
T Consensus       386 aprRg~lEvW~~~  398 (415)
T PF14655_consen  386 APRRGILEVWSMR  398 (415)
T ss_pred             eccCCeEEEEecC
Confidence            6678899999864

>KOG4441|consensus

Probab=96.53  E-value=0.3  Score=48.52  Aligned_cols=213  Identities=18%  Similarity=0.218  Sum_probs=103.0

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeEEE--EEecCCcceEEEEEecCCCEEEEEeCC------CcEEEEEcCCCeE
Q psy226          159 SGKLLVSCSAD------MSLKLWDMSTYQCLK--TMQGHDHNVTGVAFLPNSDFVLSASRD------KTIKMWEVATGYC  224 (406)
Q Consensus       159 ~g~~l~sgs~d------~~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~p~~~~l~s~s~d------~~i~iwd~~~~~~  224 (406)
                      .+.+++.|+.+      ..+..+|..+.+...  .+. ....-.+++.. ++...++|+.|      .++..||..+..-
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            34566666665      367788887653322  222 12223344444 45677888888      3566777766542


Q ss_pred             EE--EeecCCccEEEEEECCCCCEEEEEeCCCe-----EEEEeCCCcc--ceeEEecCCceEEEEEeCCCCCcccccccc
Q psy226          225 VK--TLTGHREWVRQIKVSPDGTLLASCSNDHT-----ARVWSLATKE--TKAELRGHDHTVECVAWAPGVASESISEAA  295 (406)
Q Consensus       225 ~~--~~~~~~~~v~~l~~~~~~~~l~s~~~d~~-----v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  295 (406)
                      ..  .+...+.......  -+|.+.|.||.||.     +-.||..+.+  ....+.......-.+.              
T Consensus       362 ~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--------------  425 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--------------  425 (571)
T ss_pred             eccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--------------
Confidence            22  1111111111111  26778888988864     4456654321  1111111001111111              


Q ss_pred             CCCCCCCCCCEEEEEeCCC------cEEEEECCCCeEEE--EEeCCCcCEEEEEEcCCCCEEEEEeCCC-----eEEEEe
Q psy226          296 GRPPGQGGGPYLATGSRDK------TIKLWDVGSGSLLF--TLIGHDNWVRGVTFHPGGKYLVSCGDDK-----TLRVWD  362 (406)
Q Consensus       296 ~~~~~~~~~~~l~s~~~d~------~i~lwd~~~~~~~~--~~~~h~~~v~~l~~s~~g~~l~sgs~d~-----~i~vwd  362 (406)
                            -+|.+.++|+.++      ++..||..++.-..  .+..-..... ++. -++...+.||.|+     +|..+|
T Consensus       426 ------~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~yd  497 (571)
T KOG4441|consen  426 ------LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYD  497 (571)
T ss_pred             ------ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEc
Confidence                  1466677777554      46677776654221  1111111111 222 2567777888776     367788


Q ss_pred             CCCCcc--ceeeccccceEEEEEEeCCCCEEEEeeCCCe
Q psy226          363 TANKRN--MKTLEAHSHFVTSLDFHRAHPYVVTGSVDKT  399 (406)
Q Consensus       363 ~~~~~~--~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~  399 (406)
                      ..+.+-  +..+......+-.+.+  ++.+.+.|+.||.
T Consensus       498 p~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  498 PETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN  534 (571)
T ss_pred             CCCCceeEcccCccccccccEEEE--CCEEEEEecccCc
Confidence            766432  2222222222222222  4566778888874

>KOG1916|consensus

Probab=96.49  E-value=0.00042  Score=68.43  Aligned_cols=133  Identities=15%  Similarity=0.222  Sum_probs=76.8

Q ss_pred             CCCcEEEEEcCCCc-EEEEecccccCeeeEEECCC-CCEEEEEeCCCcEEEEeCC--CCeEEEEEe-----cCCcceEEE
Q psy226          126 EDATIRLWDYETGE-YERALHGHLDSVQDIAFDQS-GKLLVSCSADMSLKLWDMS--TYQCLKTMQ-----GHDHNVTGV  196 (406)
Q Consensus       126 ~dg~v~vwd~~~~~-~~~~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~vwd~~--~~~~~~~~~-----~h~~~v~~~  196 (406)
                      ..+.|++-+..+.. ....++|..+.|-.+.|-.. -..+.  -.-|...|||+.  .|+....+.     .....+.-+
T Consensus       109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V  186 (1283)
T KOG1916|consen  109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV  186 (1283)
T ss_pred             hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence            34566666654432 12335677888888888432 11121  122567889875  343322221     122233344


Q ss_pred             EEe---cCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEE-----------ECCCCCEEEEEeCCCeEEEEeC
Q psy226          197 AFL---PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK-----------VSPDGTLLASCSNDHTARVWSL  261 (406)
Q Consensus       197 ~~~---p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~-----------~~~~~~~l~s~~~d~~v~vwd~  261 (406)
                      .|.   ++.-++..+-.+++|++.+..+... ..+.+|..++..++           ++|||..|+.++.||.++.|.+
T Consensus       187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            444   4566777777888998877655322 44556777665543           5777777777777777777754

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.48  E-value=1.3  Score=45.60  Aligned_cols=111  Identities=16%  Similarity=0.214  Sum_probs=72.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccccC--------eeeEEECC----------------CCCEEEEEeCCCcEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHLDS--------VQDIAFDQ----------------SGKLLVSCSADMSLK  173 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~--------V~~l~~~~----------------~g~~l~sgs~d~~i~  173 (406)
                      +..|..++.++.|.-.|..+|+.+-.+......        .+.+++..                .+.+++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567888888999999999999877665432110        12233311                245788899999999


Q ss_pred             EEeCCCCeEEEEEecCCcceE-------------EEEEec--CCCEEEEEeC----------CCcEEEEEcCCCeEEEEe
Q psy226          174 LWDMSTYQCLKTMQGHDHNVT-------------GVAFLP--NSDFVLSASR----------DKTIKMWEVATGYCVKTL  228 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~-------------~~~~~p--~~~~l~s~s~----------d~~i~iwd~~~~~~~~~~  228 (406)
                      -.|..+++.+..+.. +..|.             .+.-.|  .++.++.|+.          +|.|+-+|.++|+.+-.+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999988766531 11110             111112  2346666643          688999999999988776


Q ss_pred             e
Q psy226          229 T  229 (406)
Q Consensus       229 ~  229 (406)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            5

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4441|consensus

Probab=96.35  E-value=1.3  Score=44.17  Aligned_cols=142  Identities=16%  Similarity=0.143  Sum_probs=73.8

Q ss_pred             CCCEEEEEeCC------CcEEEEEcCCCcEEEEecc-cccCeeeEEECCCCCEEEEEeCC------CcEEEEeCCCCeEE
Q psy226          117 VFSLMASCSED------ATIRLWDYETGEYERALHG-HLDSVQDIAFDQSGKLLVSCSAD------MSLKLWDMSTYQCL  183 (406)
Q Consensus       117 ~~~~latgs~d------g~v~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~g~~l~sgs~d------~~i~vwd~~~~~~~  183 (406)
                      .+.+++.|+.+      ..+..||..++.......- +...-.+++.. +|...++|+.|      .++..||..+.+-.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            34566666666      3678888888754433221 22223344443 45777888888      35777887765532


Q ss_pred             E--EEecCCcceEEEEEecCCCEEEEEeCCCc-----EEEEEcCCCeEE--EEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          184 K--TMQGHDHNVTGVAFLPNSDFVLSASRDKT-----IKMWEVATGYCV--KTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       184 ~--~~~~h~~~v~~~~~~p~~~~l~s~s~d~~-----i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      .  .+...........+  +|...++|+.||.     |-.||..+.+-.  ..+..........  .-+|.+.+.||.|+
T Consensus       363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDG  438 (571)
T ss_pred             ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCC
Confidence            2  22222222222222  5777888888864     666776654311  1111111111112  22677778888665


Q ss_pred             e------EEEEeCCC
Q psy226          255 T------ARVWSLAT  263 (406)
Q Consensus       255 ~------v~vwd~~~  263 (406)
                      .      +..||..+
T Consensus       439 ~~~~l~sve~YDP~t  453 (571)
T KOG4441|consen  439 SSNCLNSVECYDPET  453 (571)
T ss_pred             CccccceEEEEcCCC
Confidence            4      44555544

>KOG3630|consensus

Probab=96.31  E-value=0.068  Score=54.93  Aligned_cols=142  Identities=16%  Similarity=0.110  Sum_probs=87.3

Q ss_pred             cEEEEEECCCCCEEE--EEeCCCeEEEEeCCCccce-----eEEecCC------ceEEEEEeCCCCCccccccccCCCCC
Q psy226          234 WVRQIKVSPDGTLLA--SCSNDHTARVWSLATKETK-----AELRGHD------HTVECVAWAPGVASESISEAAGRPPG  300 (406)
Q Consensus       234 ~v~~l~~~~~~~~l~--s~~~d~~v~vwd~~~~~~~-----~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~  300 (406)
                      .+..+...+|+...+  ..+++-.|..||+++-...     ..+..|.      ....++.|.|....            
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~------------  169 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL------------  169 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc------------
Confidence            345566677765543  3445568999998753221     1122221      23456677774322            


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc----cc
Q psy226          301 QGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA----HS  376 (406)
Q Consensus       301 ~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~----h~  376 (406)
                           ..+....|+.|++..+.-.....+-..-...+++++|+|.|+.++.|-..|++.-|... .+....+..    ..
T Consensus       170 -----n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~  243 (1405)
T KOG3630|consen  170 -----NSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEEN  243 (1405)
T ss_pred             -----hhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCC
Confidence                 35666778888887664322211111234568999999999999999999999888643 222222211    14


Q ss_pred             ceEEEEEEeCCCCEEEE
Q psy226          377 HFVTSLDFHRAHPYVVT  393 (406)
Q Consensus       377 ~~v~~l~~~~~~~~l~s  393 (406)
                      ..|.+|.|-....+|++
T Consensus       244 yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  244 YRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             cceeEEEEecceeEEEE
Confidence            57999999888777765

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.26  E-value=0.022  Score=35.39  Aligned_cols=34  Identities=15%  Similarity=0.200  Sum_probs=29.6

Q ss_pred             CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q psy226          334 DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN  368 (406)
Q Consensus       334 ~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~  368 (406)
                      .+.|..++|+|....||.|..||.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999988 4443

>PRK10115 protease 2; Provisional

Probab=96.18  E-value=1.8  Score=44.24  Aligned_cols=109  Identities=12%  Similarity=0.135  Sum_probs=64.9

Q ss_pred             CeEEEEEcCCCCEEEEEeC-CC----cEEEEEcCCCcEEE-EecccccCeeeEEECCCCCEEEEEeCC------CcEEEE
Q psy226          108 PVIKVIFHPVFSLMASCSE-DA----TIRLWDYETGEYER-ALHGHLDSVQDIAFDQSGKLLVSCSAD------MSLKLW  175 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~-dg----~v~vwd~~~~~~~~-~~~~h~~~V~~l~~~~~g~~l~sgs~d------~~i~vw  175 (406)
                      .+..+.++|++++||-+.. +|    .|++-|+.+|+.+. .+.+ .  -..++|.+|++.|+-...+      ..|..+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            4667889999998885533 23    48888998876322 2221 1  1469999999866655443      357777


Q ss_pred             eCCCC--eEEEEEecCCcceE-EEEEecCCCEEEEEeC---CCcEEEEEc
Q psy226          176 DMSTY--QCLKTMQGHDHNVT-GVAFLPNSDFVLSASR---DKTIKMWEV  219 (406)
Q Consensus       176 d~~~~--~~~~~~~~h~~~v~-~~~~~p~~~~l~s~s~---d~~i~iwd~  219 (406)
                      ++.++  +....+........ ....+.++++++..+.   ++.+.+++.
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            88876  32233333333333 2333337776554433   456888884

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.16  E-value=1.1  Score=41.54  Aligned_cols=244  Identities=17%  Similarity=0.174  Sum_probs=108.9

Q ss_pred             EcCCCcEEEEeccccc-----CeeeEEECCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEE
Q psy226          134 DYETGEYERALHGHLD-----SVQDIAFDQSGKLLVSCSA-DM--SLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFV  205 (406)
Q Consensus       134 d~~~~~~~~~~~~h~~-----~V~~l~~~~~g~~l~sgs~-d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  205 (406)
                      |-.||..+..+..+..     ..+.=+|.++|+.|+-++. ||  .+.+.|+.+++..+-..+-.....+..++|+++.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            5667766666653322     2333467788876665554 55  56666888887665544433334456677888887


Q ss_pred             EEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEE--CCCCCEEEEEeC---C-------------------CeEEEEeC
Q psy226          206 LSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKV--SPDGTLLASCSN---D-------------------HTARVWSL  261 (406)
Q Consensus       206 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~s~~~---d-------------------~~v~vwd~  261 (406)
                      +-......|+-.|+.+.+....+.-...++-...|  +.++..++..-.   |                   ..|.-.|+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            76666678899999998766666666666654444  456666543321   1                   12334455


Q ss_pred             CCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC---CCc-EEEEECCC-CeEEEEEeCC--C
Q psy226          262 ATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR---DKT-IKLWDVGS-GSLLFTLIGH--D  334 (406)
Q Consensus       262 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~-i~lwd~~~-~~~~~~~~~h--~  334 (406)
                      .+++....+. -..-+.-+.|+|.                 +...++-|..   |.. -|||-+.+ |.....+..|  .
T Consensus       176 ~tG~~~~v~~-~~~wlgH~~fsP~-----------------dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~  237 (386)
T PF14583_consen  176 KTGERKVVFE-DTDWLGHVQFSPT-----------------DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEG  237 (386)
T ss_dssp             TT--EEEEEE-ESS-EEEEEEETT-----------------EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TT
T ss_pred             CCCceeEEEe-cCccccCcccCCC-----------------CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCC
Confidence            5544333222 1223344555553                 1223333332   222 36665533 3323333322  2


Q ss_pred             cCEEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCC
Q psy226          335 NWVRGVTFHPGGKYLVSC-----GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVD  397 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sg-----s~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~D  397 (406)
                      ..+.-=-|.|||..|.=-     +.+..|.-.|..+++... + ........+--++++.+++--+.|
T Consensus       238 e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-~-~~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  238 ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-L-MEMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-E-EEE-SEEEEEE-TTSSEEEEEE--
T ss_pred             cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE-E-EeCCceeeeEEcCCCCEEEecCCC
Confidence            234445788999866432     234456667777765432 2 111234455567899888764444

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.12  E-value=0.78  Score=40.45  Aligned_cols=160  Identities=13%  Similarity=0.181  Sum_probs=107.7

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc-cccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHG-HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~  181 (406)
                      .|-...|.++.|+|+.+.|++....+.-.||=...|++++++.- .-.....+.+..+|.+.++--.++.+.++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            45556699999999999999888888888887778888887652 12334567888888888888888888888665331


Q ss_pred             EEE-------EE---ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe---EEEEeecCC-------ccEEEEEEC
Q psy226          182 CLK-------TM---QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY---CVKTLTGHR-------EWVRQIKVS  241 (406)
Q Consensus       182 ~~~-------~~---~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~~~-------~~v~~l~~~  241 (406)
                      ...       .+   ...+....+++|.|.++.|+.+-.-.-+.|+.+..+.   .......+.       ..|.++.|+
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            111       11   1125678899999999888888777778887765332   111111221       235667787


Q ss_pred             CC-CCEEEEEeCCCeEEEEeCC
Q psy226          242 PD-GTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       242 ~~-~~~l~s~~~d~~v~vwd~~  262 (406)
                      +. +.+++-+..++.+.-.|..
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecC
Confidence            64 4555666667777777664

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.11  E-value=0.89  Score=40.12  Aligned_cols=143  Identities=16%  Similarity=0.160  Sum_probs=79.8

Q ss_pred             cEEEEEECCCCCEEEEEe---CCCeEEEEeCCCccceeEE-ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE
Q psy226          234 WVRQIKVSPDGTLLASCS---NDHTARVWSLATKETKAEL-RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT  309 (406)
Q Consensus       234 ~v~~l~~~~~~~~l~s~~---~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  309 (406)
                      .+...+++++|..++...   ....++++...  ...... .+.  .+..-.|.+                  .+...+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~--~l~~PS~d~------------------~g~~W~v   82 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGG--SLTRPSWDP------------------DGWVWTV   82 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCC--ccccccccC------------------CCCEEEE
Confidence            577889999999887665   33445555433  222221 111  222333333                  3455555


Q ss_pred             EeCCCcEEEEE-CCCCeEEE-EEeCC--CcCEEEEEEcCCCCEEEEEe---CCCeEEEEeCC---CC------ccceeec
Q psy226          310 GSRDKTIKLWD-VGSGSLLF-TLIGH--DNWVRGVTFHPGGKYLVSCG---DDKTLRVWDTA---NK------RNMKTLE  373 (406)
Q Consensus       310 ~~~d~~i~lwd-~~~~~~~~-~~~~h--~~~v~~l~~s~~g~~l~sgs---~d~~i~vwd~~---~~------~~~~~l~  373 (406)
                      ...+...+++. ...+.... .+...  ...|+.+.+||||..++...   .++.|.|=-+.   .+      .......
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~  162 (253)
T PF10647_consen   83 DDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP  162 (253)
T ss_pred             EcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc
Confidence            55566666663 33333221 12111  12799999999999877654   45777766432   22      1111122


Q ss_pred             cccceEEEEEEeCCCCEEEEeeCCC
Q psy226          374 AHSHFVTSLDFHRAHPYVVTGSVDK  398 (406)
Q Consensus       374 ~h~~~v~~l~~~~~~~~l~sgs~Dg  398 (406)
                      .....+++++|.+++.+++.+...+
T Consensus       163 ~~~~~v~~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  163 PLLSDVTDVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             cccCcceeeeecCCCEEEEEeCCCC
Confidence            2345789999999998876655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.11  E-value=1.9  Score=43.95  Aligned_cols=72  Identities=15%  Similarity=0.348  Sum_probs=50.5

Q ss_pred             CeeeEEECCCCCEEEEEeCCCcEEEEeCC----------CCeE---EEEE--------ecCCcceEEEEEecC---CCEE
Q psy226          150 SVQDIAFDQSGKLLVSCSADMSLKLWDMS----------TYQC---LKTM--------QGHDHNVTGVAFLPN---SDFV  205 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs~d~~i~vwd~~----------~~~~---~~~~--------~~h~~~v~~~~~~p~---~~~l  205 (406)
                      .|..|.++++|.+|+..|..|.+.+ .+.          .++.   .+++        ..+...|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4788999999999998888664443 331          1111   1111        123457889999996   4688


Q ss_pred             EEEeCCCcEEEEEcCCC
Q psy226          206 LSASRDKTIKMWEVATG  222 (406)
Q Consensus       206 ~s~s~d~~i~iwd~~~~  222 (406)
                      +.-..|+++|+||+...
T Consensus       165 ~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEecCCEEEEEecCCC
Confidence            88899999999999653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.04  E-value=1.2  Score=41.05  Aligned_cols=235  Identities=18%  Similarity=0.189  Sum_probs=114.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE---EEEe----cccccCeeeEEECCC---CCEEEEEeC-C--------
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYETGEY---ERAL----HGHLDSVQDIAFDQS---GKLLVSCSA-D--------  169 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~---~~~~----~~h~~~V~~l~~~~~---g~~l~sgs~-d--------  169 (406)
                      -..++|.|++.++++ -..|.|++++ .++..   ...+    .........++++|+   ..+|..... .        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            468999999988776 5599999999 44443   2222    123356788999994   234433332 1        


Q ss_pred             CcEEEEeCCCC-------e-EEEEEec---CCcceEEEEEecCCCEEEEEeCCCc-------------EEEEEcCCCeE-
Q psy226          170 MSLKLWDMSTY-------Q-CLKTMQG---HDHNVTGVAFLPNSDFVLSASRDKT-------------IKMWEVATGYC-  224 (406)
Q Consensus       170 ~~i~vwd~~~~-------~-~~~~~~~---h~~~v~~~~~~p~~~~l~s~s~d~~-------------i~iwd~~~~~~-  224 (406)
                      ..|.-|.....       + .+..+..   ..+.-..|.|.|+|.+.++.+..+.             |.-.+. +|.. 
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~-dG~~p  160 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP-DGSIP  160 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET-TSSB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecc-cCcCC
Confidence            13433433322       1 1122222   3466778999999976665443322             111121 1110 


Q ss_pred             ------------EEE-eecCCccEEEEEECCC-CCEEEEE-eCCCeEEEEeCCCcc------------------------
Q psy226          225 ------------VKT-LTGHREWVRQIKVSPD-GTLLASC-SNDHTARVWSLATKE------------------------  265 (406)
Q Consensus       225 ------------~~~-~~~~~~~v~~l~~~~~-~~~l~s~-~~d~~v~vwd~~~~~------------------------  265 (406)
                                  ... -.|++. ...++|+|. |.++++= +.|+.=.|--+..+.                        
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~  239 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC  239 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred             CCCccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence                        000 112222 346889988 6655442 223322222111110                        


Q ss_pred             -----ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE---EE-eCCCcC
Q psy226          266 -----TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF---TL-IGHDNW  336 (406)
Q Consensus       266 -----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~---~~-~~h~~~  336 (406)
                           +...+..| ..+..+.|..+..           .....+.++++....+.|....+..+..+.   .+ ......
T Consensus       240 ~~~~~P~~~~~~~-~ap~G~~~y~g~~-----------fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r  307 (331)
T PF07995_consen  240 PGFVPPVFAYPPH-SAPTGIIFYRGSA-----------FPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGR  307 (331)
T ss_dssp             TTS---SEEETTT---EEEEEEE-SSS-----------SGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-
T ss_pred             CCcCccceeecCc-cccCceEEECCcc-----------CccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCC
Confidence                 01111111 1222222222111           112246677777767777777776443322   22 234447


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEE
Q psy226          337 VRGVTFHPGGKYLVSCGDDKTLR  359 (406)
Q Consensus       337 v~~l~~s~~g~~l~sgs~d~~i~  359 (406)
                      +..+++.|||.+.++-+.+|.|+
T Consensus       308 ~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  308 PRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             ceEEEEcCCCeEEEEECCCCeEe
Confidence            99999999999988888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.00  E-value=0.47  Score=44.50  Aligned_cols=141  Identities=18%  Similarity=0.202  Sum_probs=79.1

Q ss_pred             CeEEEEEcCCCCEEEEEe-----------CCC-cEEEEEcCC--CcEE--EEecccccCeeeEEECCCCCEEEEEeCCCc
Q psy226          108 PVIKVIFHPVFSLMASCS-----------EDA-TIRLWDYET--GEYE--RALHGHLDSVQDIAFDQSGKLLVSCSADMS  171 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs-----------~dg-~v~vwd~~~--~~~~--~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~  171 (406)
                      ....|+|.++|+++++-.           ..+ .|.+++-.+  |+..  ..+.......+.+++.++| +++ ++....
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i   92 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI   92 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence            345789999999887753           223 787776543  3322  2333334456889999888 444 445443


Q ss_pred             EEEEeCCC-------CeEE-EEEec----CCcceEEEEEecCCCEEEEEeCC-------------------CcEEEEEcC
Q psy226          172 LKLWDMST-------YQCL-KTMQG----HDHNVTGVAFLPNSDFVLSASRD-------------------KTIKMWEVA  220 (406)
Q Consensus       172 i~vwd~~~-------~~~~-~~~~~----h~~~v~~~~~~p~~~~l~s~s~d-------------------~~i~iwd~~  220 (406)
                      .++.|...       .+.+ ..+..    +.+....++|.|+|.+.++-+..                   +.|.-+|..
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd  172 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD  172 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence            34445431       1111 22222    23457789999999866654421                   334444544


Q ss_pred             CCeEEEEeecCCccEEEEEECCCCCEEEEEe
Q psy226          221 TGYCVKTLTGHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       221 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                      ++.....-.++ .....++|+|+|+++++-.
T Consensus       173 g~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       173 GGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence            44332222232 3346789999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.99  E-value=1.2  Score=40.33  Aligned_cols=113  Identities=13%  Similarity=0.229  Sum_probs=61.1

Q ss_pred             EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEc
Q psy226          140 YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEV  219 (406)
Q Consensus       140 ~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~  219 (406)
                      .......-...+..+.-+++|+++++++.-....-||.....-...-+.....|.+|.|.|++.+.+.+ +.|.|++=+.
T Consensus       136 W~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~  214 (302)
T PF14870_consen  136 WQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD  214 (302)
T ss_dssp             EEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred             eeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence            334444455778889999999999888776666788764322222233356789999999998776644 8888888772


Q ss_pred             CC-CeEEEE-eec--CCc-cEEEEEECCCCCEEEEEeCC
Q psy226          220 AT-GYCVKT-LTG--HRE-WVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       220 ~~-~~~~~~-~~~--~~~-~v~~l~~~~~~~~l~s~~~d  253 (406)
                      .. ...-.. +..  -.. .+..+++.+++...++|+..
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            21 111111 111  122 37889999998887776655

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.95  E-value=1  Score=39.44  Aligned_cols=181  Identities=17%  Similarity=0.140  Sum_probs=108.6

Q ss_pred             CeeeEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEecCCcc-eEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEE
Q psy226          150 SVQDIAFDQSGKLLVSCSADM--SLKLWDMSTYQCLKTMQGHDHN-VTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVK  226 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs~d~--~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~  226 (406)
                      -...+.|..+|.++-+.+.-|  .|+.+|+.+++......-...- -.+++.. ++......-.++...+||..+.+.+.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEE
Confidence            355788877788888877766  7999999999877655433221 1244444 23344445678999999999988888


Q ss_pred             EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecC--CceE---EEEEeCCCCCccccccccCCCCCC
Q psy226          227 TLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH--DHTV---ECVAWAPGVASESISEAAGRPPGQ  301 (406)
Q Consensus       227 ~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~v---~~~~~~~~~~~~~~~~~~~~~~~~  301 (406)
                      ++.-. ..=..++  .+|..|+.......++.+|..+.+....+.-.  ..++   .-+-|.                  
T Consensus       125 ~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i------------------  183 (264)
T PF05096_consen  125 TFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI------------------  183 (264)
T ss_dssp             EEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE------------------
T ss_pred             EEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE------------------
Confidence            77532 3334455  46677777777788999998776555444321  1222   222222                  


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEeC------------C---CcCEEEEEEcCCCCEEEEEe
Q psy226          302 GGGPYLATGSRDKTIKLWDVGSGSLLFTLIG------------H---DNWVRGVTFHPGGKYLVSCG  353 (406)
Q Consensus       302 ~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~------------h---~~~v~~l~~s~~g~~l~sgs  353 (406)
                       +|.+.|---....|...|..+|+.+..+.-            +   .+-.+.++++|..+.|+..|
T Consensus       184 -~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  184 -NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             -TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             -cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence             244444444556677788888888765521            1   34578999998766555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.69  E-value=0.39  Score=47.54  Aligned_cols=110  Identities=12%  Similarity=0.292  Sum_probs=73.5

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEEC--CCCCEEEEEeCCCcEEEEeCC------
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFD--QSGKLLVSCSADMSLKLWDMS------  178 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~--~~g~~l~sgs~d~~i~vwd~~------  178 (406)
                      +...+.-++.++..+.-+...++.|||...+.++..-. ...+.|.+++|.  |+|+.+++.+-...|.++.-.      
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            44455555555555555555679999999887554332 456889999984  688888888888999998431      


Q ss_pred             ---CCeEEEEE--ecCC-cceEEEEEecCCCEEEEEeCCCcEEEEEc
Q psy226          179 ---TYQCLKTM--QGHD-HNVTGVAFLPNSDFVLSASRDKTIKMWEV  219 (406)
Q Consensus       179 ---~~~~~~~~--~~h~-~~v~~~~~~p~~~~l~s~s~d~~i~iwd~  219 (406)
                         ++..++.+  ..|+ ++|.+..|.++|.+++.++  +.+.|+|-
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence               22333332  3444 7899999999987665543  35666653

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.66  E-value=1.4  Score=38.73  Aligned_cols=154  Identities=15%  Similarity=0.214  Sum_probs=87.2

Q ss_pred             EEcCCCCEEEEEeC-----CCcEEEEEcCCC-cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEE-----------
Q psy226          113 IFHPVFSLMASCSE-----DATIRLWDYETG-EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW-----------  175 (406)
Q Consensus       113 ~~~p~~~~latgs~-----dg~v~vwd~~~~-~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vw-----------  175 (406)
                      .|||||.+|...-.     -|.|-|||...+ +....+..|.-.-..+.+.+||+.|+.+..  -|..-           
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld  197 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD  197 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh
Confidence            58999999887533     467999998743 234456667777788999999998887642  23333           


Q ss_pred             ---------eCCCCeEEE--EEe--cCCcceEEEEEecCCCEEEEEeCCCc-----EEEEEcCCCeEEEEee-------c
Q psy226          176 ---------DMSTYQCLK--TMQ--GHDHNVTGVAFLPNSDFVLSASRDKT-----IKMWEVATGYCVKTLT-------G  230 (406)
Q Consensus       176 ---------d~~~~~~~~--~~~--~h~~~v~~~~~~p~~~~l~s~s~d~~-----i~iwd~~~~~~~~~~~-------~  230 (406)
                               |..+++.+.  ++.  .+.-.|..++..++|..++.+-..|.     -.+=-...|+.++.+.       .
T Consensus       198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~  277 (366)
T COG3490         198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA  277 (366)
T ss_pred             hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence                     222333221  111  22334666666666655554433221     0000111222222221       1


Q ss_pred             CCccEEEEEECCCCCEEEEEe-CCCeEEEEeCCCcccee
Q psy226          231 HREWVRQIKVSPDGTLLASCS-NDHTARVWSLATKETKA  268 (406)
Q Consensus       231 ~~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~  268 (406)
                      -..+|-+++.+.+..+++..+ ..+...+||..++..+.
T Consensus       278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~  316 (366)
T COG3490         278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS  316 (366)
T ss_pred             HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence            234567788876666665555 45667799999887554

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.58  E-value=1.5  Score=38.69  Aligned_cols=119  Identities=11%  Similarity=0.212  Sum_probs=85.9

Q ss_pred             ecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC-CcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q psy226          144 LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGH-DHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG  222 (406)
Q Consensus       144 ~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~  222 (406)
                      +.|-+..|.++.|+|+.+.|++..+...-.||=-.+|+.++++.-. -+....+.+..++.+.++--+++.+.+..+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            4455566999999999999888888877777766678888776421 233456888888888888888888888876544


Q ss_pred             eEEEE-------e---ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy226          223 YCVKT-------L---TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       223 ~~~~~-------~---~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~  262 (406)
                      ..+..       +   ...+.....++|+|....|..+-.-.-+.||.+.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            22111       1   1124456789999999999888888888888765

>PHA03098 kelch-like protein; Provisional

Probab=95.56  E-value=0.56  Score=46.51  Aligned_cols=103  Identities=11%  Similarity=0.068  Sum_probs=52.0

Q ss_pred             CCCEEEEEeCCC------cEEEEEcCCCcEEEEecc--cccCeeeEEECCCCCEEEEEeCC-----CcEEEEeCCCCeEE
Q psy226          117 VFSLMASCSEDA------TIRLWDYETGEYERALHG--HLDSVQDIAFDQSGKLLVSCSAD-----MSLKLWDMSTYQCL  183 (406)
Q Consensus       117 ~~~~latgs~dg------~v~vwd~~~~~~~~~~~~--h~~~V~~l~~~~~g~~l~sgs~d-----~~i~vwd~~~~~~~  183 (406)
                      ++.+++.|+.++      .+..||..+.+....-..  .......+.+  ++.+.+.|+.+     ..+..||..+.+..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            345666776543      577788877765432111  1111222222  56677777765     34777887664422


Q ss_pred             E--EEecCCcceEEEEEecCCCEEEEEeCC------CcEEEEEcCCCe
Q psy226          184 K--TMQGHDHNVTGVAFLPNSDFVLSASRD------KTIKMWEVATGY  223 (406)
Q Consensus       184 ~--~~~~h~~~v~~~~~~p~~~~l~s~s~d------~~i~iwd~~~~~  223 (406)
                      .  .+....... +++. -++...+.|+.+      ..+..||..+..
T Consensus       372 ~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        372 EEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             eCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            1  111111111 1222 245666666632      357788887654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.55  E-value=0.26  Score=48.76  Aligned_cols=99  Identities=17%  Similarity=0.356  Sum_probs=67.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEe-CCCcCEEEEEEc--CCCCEEEEEeCCCeEEEEeCC-----C----Ccccee
Q psy226          304 GPYLATGSRDKTIKLWDVGSGSLLFTLI-GHDNWVRGVTFH--PGGKYLVSCGDDKTLRVWDTA-----N----KRNMKT  371 (406)
Q Consensus       304 ~~~l~s~~~d~~i~lwd~~~~~~~~~~~-~h~~~v~~l~~s--~~g~~l~sgs~d~~i~vwd~~-----~----~~~~~~  371 (406)
                      ++..++-+....+.|||.+.+...+.-. ...+.|.++.|.  |+|+.+++.|-.+.|.++--.     +    ...++.
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~  120 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK  120 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence            3444555555679999999888654322 456779999884  689999999999999998531     1    123333


Q ss_pred             e--cccc-ceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          372 L--EAHS-HFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       372 l--~~h~-~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      +  ..|+ ++|.+..|.++|.+++.+|  ..+.|+|
T Consensus       121 i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d  154 (631)
T PF12234_consen  121 IDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD  154 (631)
T ss_pred             EEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence            3  2333 5799999999997776443  5566664

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.33  E-value=1.5  Score=41.18  Aligned_cols=61  Identities=8%  Similarity=0.115  Sum_probs=38.1

Q ss_pred             cCEEEEEEcCCCCEEEEEeCC-------------------CeEEEEeCCCCccceee-ccccceEEEEEEeCCCCEEEEe
Q psy226          335 NWVRGVTFHPGGKYLVSCGDD-------------------KTLRVWDTANKRNMKTL-EAHSHFVTSLDFHRAHPYVVTG  394 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d-------------------~~i~vwd~~~~~~~~~l-~~h~~~v~~l~~~~~~~~l~sg  394 (406)
                      .....++|.|+|.+.++-+..                   |.|.-+|..+++. ..+ .++ .....++|+|++.++++-
T Consensus       124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~-rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGF-QNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCc-CCCccceECCCCCEEEEc
Confidence            447789999999877765521                   4455555554432 222 222 235689999999988764


Q ss_pred             eCC
Q psy226          395 SVD  397 (406)
Q Consensus       395 s~D  397 (406)
                      ..+
T Consensus       202 n~~  204 (367)
T TIGR02604       202 NDD  204 (367)
T ss_pred             cCC
Confidence            433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK13684 Ycf48-like protein; Provisional

Probab=95.32  E-value=1.1  Score=41.31  Aligned_cols=150  Identities=9%  Similarity=0.050  Sum_probs=83.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEE-EEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRL-WDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~v-wd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      ...++++.+.|++.++++|. .|.+.. +|-..........+-...++++.+.+++..++.| ..|.+++=....+....
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence            34688899999887776664 454432 2222122333333334678899999998877665 45766432233333222


Q ss_pred             EEec----CCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee---cCCccEEEEEECCCCCEEEEEeCCCeEE
Q psy226          185 TMQG----HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT---GHREWVRQIKVSPDGTLLASCSNDHTAR  257 (406)
Q Consensus       185 ~~~~----h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~s~~~d~~v~  257 (406)
                      ....    ....+.++.+.|++..++ ++.+|.+.. ....|..-....   +-+.....+.+..+++.++ .+..|.|.
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il  326 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLL  326 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEE
Confidence            1111    123578889998776554 456676543 334443333322   2223466777776666555 55677776


Q ss_pred             EEe
Q psy226          258 VWS  260 (406)
Q Consensus       258 vwd  260 (406)
                      -|+
T Consensus       327 ~~~  329 (334)
T PRK13684        327 RYV  329 (334)
T ss_pred             Eec
Confidence            665

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.17  E-value=2.9  Score=39.36  Aligned_cols=193  Identities=12%  Similarity=0.164  Sum_probs=89.2

Q ss_pred             CCEEEEEe-CCCcEEEEeCCC----CeEEEEEec---CC----cceEEEEEecCCCEEEEE--eCC----CcEEEEEcCC
Q psy226          160 GKLLVSCS-ADMSLKLWDMST----YQCLKTMQG---HD----HNVTGVAFLPNSDFVLSA--SRD----KTIKMWEVAT  221 (406)
Q Consensus       160 g~~l~sgs-~d~~i~vwd~~~----~~~~~~~~~---h~----~~v~~~~~~p~~~~l~s~--s~d----~~i~iwd~~~  221 (406)
                      -++|+..+ ..+.|.|.|+.+    .+..+.+..   +.    ..-..+...|+|+.++++  +.+    |-+.+.|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            45676666 678899999873    344455432   11    112234455788888774  333    4567777776


Q ss_pred             CeEEEEeecC---CccEEEEEECCCCCEEEEEe--------------------CCCeEEEEeCCCccceeEEecCC--ce
Q psy226          222 GYCVKTLTGH---REWVRQIKVSPDGTLLASCS--------------------NDHTARVWSLATKETKAELRGHD--HT  276 (406)
Q Consensus       222 ~~~~~~~~~~---~~~v~~l~~~~~~~~l~s~~--------------------~d~~v~vwd~~~~~~~~~~~~~~--~~  276 (406)
                      ..........   ...-..+-+.|..+.++|..                    ...++.+||+.+.+.++.+.--.  ..
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            5555444322   23345666777777777653                    34689999999998888776433  22


Q ss_pred             EEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcE-EEEECCCCe----EEEEEeCC-----------------C
Q psy226          277 VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTI-KLWDVGSGS----LLFTLIGH-----------------D  334 (406)
Q Consensus       277 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i-~lwd~~~~~----~~~~~~~h-----------------~  334 (406)
                      ...+.|..+...              .-.++ .+.-..+| ++|....+.    .+..+..-                 .
T Consensus       247 pLEvRflH~P~~--------------~~gFv-g~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P  311 (461)
T PF05694_consen  247 PLEVRFLHDPDA--------------NYGFV-GCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP  311 (461)
T ss_dssp             EEEEEE-SSTT----------------EEEE-EEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred             eEEEEecCCCCc--------------cceEE-EEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence            445565543211              11122 22233333 444433332    22222211                 2


Q ss_pred             cCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCc
Q psy226          335 NWVRGVTFHPGGKYLVS-CGDDKTLRVWDTANKR  367 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~s-gs~d~~i~vwd~~~~~  367 (406)
                      .-|+.+.+|.|.++|.. +-.+|.||.||+.+..
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence            45799999999999865 4568999999998643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02790 Kelch-like protein; Provisional

Probab=95.11  E-value=1.8  Score=42.22  Aligned_cols=103  Identities=9%  Similarity=-0.037  Sum_probs=52.2

Q ss_pred             CCCEEEEEeCCC-----cEEEEEcCCCcEEEEeccc--ccCeeeEEECCCCCEEEEEeCC--CcEEEEeCCCCeEE--EE
Q psy226          117 VFSLMASCSEDA-----TIRLWDYETGEYERALHGH--LDSVQDIAFDQSGKLLVSCSAD--MSLKLWDMSTYQCL--KT  185 (406)
Q Consensus       117 ~~~~latgs~dg-----~v~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~g~~l~sgs~d--~~i~vwd~~~~~~~--~~  185 (406)
                      .+.+++.|+.++     ++..||..++.....-...  ......+.  -+|.+.+.|+.+  .++..||..+.+..  ..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            345667777653     4667887776543322111  11111222  356666777754  35778887654322  12


Q ss_pred             EecCCcceEEEEEecCCCEEEEEeCCC---cEEEEEcCCCe
Q psy226          186 MQGHDHNVTGVAFLPNSDFVLSASRDK---TIKMWEVATGY  223 (406)
Q Consensus       186 ~~~h~~~v~~~~~~p~~~~l~s~s~d~---~i~iwd~~~~~  223 (406)
                      +.........+.  -+|...+.|+.++   ++..||..+..
T Consensus       349 l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~  387 (480)
T PHA02790        349 LLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ  387 (480)
T ss_pred             CCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE
Confidence            211111111222  2566667777553   46678876653

>KOG4499|consensus

Probab=94.95  E-value=2.1  Score=36.57  Aligned_cols=213  Identities=14%  Similarity=0.149  Sum_probs=108.5

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEE-EecccccCeeeEEECCCC---CEEEEEeCCCcEEEEeCC--CCeEEEEEec---
Q psy226          118 FSLMASCSEDATIRLWDYETGEYER-ALHGHLDSVQDIAFDQSG---KLLVSCSADMSLKLWDMS--TYQCLKTMQG---  188 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~-~~~~h~~~V~~l~~~~~g---~~l~sgs~d~~i~vwd~~--~~~~~~~~~~---  188 (406)
                      ++++..-=..|.|.-||+.+.+..+ .+.+  .++.++.+--.|   .+.+.++.--.|--||..  .-...+++..   
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            3455555566777778887755322 2332  223344442222   233333333345557733  2222233211   


Q ss_pred             --CCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCC--------ccEEEEEECCCCCEE-EEEeCCCeEE
Q psy226          189 --HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR--------EWVRQIKVSPDGTLL-ASCSNDHTAR  257 (406)
Q Consensus       189 --h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~--------~~v~~l~~~~~~~~l-~s~~~d~~v~  257 (406)
                        .......-..+|+|++.+-.-.|-.- ......|....-+.+|.        ..-+.++|+.+.+.+ +.-+.+-.|.
T Consensus       105 d~kknR~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hHHhcccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence              12334556678899884433222111 11112222222233332        223567888776655 4556677887


Q ss_pred             EEe--CCCccceeEEecCCceEEEEEeC-CCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy226          258 VWS--LATKETKAELRGHDHTVECVAWA-PGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD  334 (406)
Q Consensus       258 vwd--~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~  334 (406)
                      -||  ..++....     ...+..+.-+ |....     ...-...+..|.+.++.-+.++|...|..+|+.+.+++-..
T Consensus       184 a~dyd~~tG~~sn-----r~~i~dlrk~~~~e~~-----~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt  253 (310)
T KOG4499|consen  184 AYDYDCPTGDLSN-----RKVIFDLRKSQPFESL-----EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT  253 (310)
T ss_pred             eeecCCCcccccC-----cceeEEeccCCCcCCC-----CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC
Confidence            787  44432211     0111111110 10000     00000012357778888888999999999999999998888


Q ss_pred             cCEEEEEEc
Q psy226          335 NWVRGVTFH  343 (406)
Q Consensus       335 ~~v~~l~~s  343 (406)
                      ..|++++|-
T Consensus       254 ~qitsccFg  262 (310)
T KOG4499|consen  254 PQITSCCFG  262 (310)
T ss_pred             CceEEEEec
Confidence            899999995

>KOG3630|consensus

Probab=94.89  E-value=0.2  Score=51.66  Aligned_cols=174  Identities=11%  Similarity=0.078  Sum_probs=100.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCC-------Cc----E-----EEEecccc-cCeeeEEECCCCCEEEE--EeCCC
Q psy226          110 IKVIFHPVFSLMASCSEDATIRLWDYET-------GE----Y-----ERALHGHL-DSVQDIAFDQSGKLLVS--CSADM  170 (406)
Q Consensus       110 ~~v~~~p~~~~latgs~dg~v~vwd~~~-------~~----~-----~~~~~~h~-~~V~~l~~~~~g~~l~s--gs~d~  170 (406)
                      +.++.++...+++.++..+.+.|+-..+       +.    +     ...++-|. -++..+...+|+...++  .+++-
T Consensus        45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~  124 (1405)
T KOG3630|consen   45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE  124 (1405)
T ss_pred             hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence            3466777777777787778777764221       11    0     11222232 24556666777765543  34445


Q ss_pred             cEEEEeCCCCeE-----EEEEecC----C--cceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCe-EEEEeecCCccEEE
Q psy226          171 SLKLWDMSTYQC-----LKTMQGH----D--HNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGY-CVKTLTGHREWVRQ  237 (406)
Q Consensus       171 ~i~vwd~~~~~~-----~~~~~~h----~--~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~v~~  237 (406)
                      .|..||+.+...     ..-+..|    .  .-..++.|+|.-. ..+.+..|+.|++..+.... .+..+ .-....++
T Consensus       125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Ta  203 (1405)
T KOG3630|consen  125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTA  203 (1405)
T ss_pred             eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-Ccccceee
Confidence            788999865321     1111112    1  2245678888543 45667789988887664321 11221 23456789


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCc--cceeEEecC-CceEEEEEeCC
Q psy226          238 IKVSPDGTLLASCSNDHTARVWSLATK--ETKAELRGH-DHTVECVAWAP  284 (406)
Q Consensus       238 l~~~~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~-~~~v~~~~~~~  284 (406)
                      ++|+|.|+.++.|-..|++.-|-..-.  ..+...... ...|.++.|..
T Consensus       204 v~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  204 VLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             EEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEec
Confidence            999999999999999999988865322  111111111 35678888864

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.85  E-value=0.95  Score=42.96  Aligned_cols=145  Identities=14%  Similarity=0.154  Sum_probs=85.5

Q ss_pred             CCEEE-EEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCC-------EEEEEeCCCeEEEEeCCCccceeEEecC
Q psy226          202 SDFVL-SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT-------LLASCSNDHTARVWSLATKETKAELRGH  273 (406)
Q Consensus       202 ~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-------~l~s~~~d~~v~vwd~~~~~~~~~~~~~  273 (406)
                      ..+|+ .|+....+.-.|+..|+.+.....|.+-  -+.+.|...       .-+.|-.+..|.-.|.+-..........
T Consensus       479 ssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         479 SSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             cceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            33433 4555667777888889888888777665  466777532       2233444555555565432211111000


Q ss_pred             CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEe
Q psy226          274 DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCG  353 (406)
Q Consensus       274 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs  353 (406)
                      ..-+..-.|+..              ......|+|.|+.-|.||+||.-.-+.-..+++-...|..+..+.+|++|++.+
T Consensus       557 KdY~tKn~Fss~--------------~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC  622 (776)
T COG5167         557 KDYKTKNKFSSG--------------MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC  622 (776)
T ss_pred             hhcccccccccc--------------ccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee
Confidence            111111112111              112356899999999999999644333445666778899999999999988776


Q ss_pred             CCCeEEEEeC
Q psy226          354 DDKTLRVWDT  363 (406)
Q Consensus       354 ~d~~i~vwd~  363 (406)
                      .. .+-+-|+
T Consensus       623 k~-yllL~d~  631 (776)
T COG5167         623 KN-YLLLTDV  631 (776)
T ss_pred             cc-eEEEEec
Confidence            54 5556664

>KOG1897|consensus

Probab=94.79  E-value=5.8  Score=40.97  Aligned_cols=97  Identities=14%  Similarity=0.252  Sum_probs=62.1

Q ss_pred             CCEEEEEeC----------CCcEEEEECCCCeEEEEEeCC--CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccee
Q psy226          304 GPYLATGSR----------DKTIKLWDVGSGSLLFTLIGH--DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKT  371 (406)
Q Consensus       304 ~~~l~s~~~----------d~~i~lwd~~~~~~~~~~~~h--~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~  371 (406)
                      +.++++|..          .|.|.++....++.+.....+  .+.+.++.. -+|++||.-  +..|++|+..+.+.++.
T Consensus       787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~  863 (1096)
T KOG1897|consen  787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRI  863 (1096)
T ss_pred             ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehh
Confidence            456666652          355666666553333332222  233444432 257777644  46899999988876666


Q ss_pred             eccccceEEEEEEeCCCCEEEEeeCCCeEEEe
Q psy226          372 LEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW  403 (406)
Q Consensus       372 l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw  403 (406)
                      -..|...+..+...-.+..++.|..=+.+.+-
T Consensus       864 e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll  895 (1096)
T KOG1897|consen  864 ECNISNPIIALDLQVKGDEIAVGDLMRSITLL  895 (1096)
T ss_pred             hhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence            56677788889888889999988776766554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.79  E-value=1.8  Score=41.99  Aligned_cols=150  Identities=21%  Similarity=0.302  Sum_probs=81.2

Q ss_pred             CcceEEEEEecCCCEE-EEEe--CCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCC----CEEEEEeCCCeEEEEeCC
Q psy226          190 DHNVTGVAFLPNSDFV-LSAS--RDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG----TLLASCSNDHTARVWSLA  262 (406)
Q Consensus       190 ~~~v~~~~~~p~~~~l-~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~----~~l~s~~~d~~v~vwd~~  262 (406)
                      -+++.+++|. ||+.+ ++.=  .+|.+++=|-   ..+    |.-.-|..+.|.|-+    -.+++....+.|.||.+.
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            3678899997 55544 3321  2333332221   122    223448889999853    356666778899999885


Q ss_pred             Cc--cceeEEecCC------ce--EEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC-eEEEEEe
Q psy226          263 TK--ETKAELRGHD------HT--VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG-SLLFTLI  331 (406)
Q Consensus       263 ~~--~~~~~~~~~~------~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~-~~~~~~~  331 (406)
                      ..  +....+....      .+  -....|+|.                  ..+|++-.....=.+++++.. ..++.-.
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk------------------~~iL~VLT~~dvSV~~sV~~d~srVkaDi  152 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPK------------------KAILTVLTARDVSVLPSVHCDSSRVKADI  152 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCC------------------CceEEEEecCceeEeeeeeeCCceEEEec
Confidence            21  1111111000      11  123456663                  344555444443345555432 2333333


Q ss_pred             CCCcCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCC
Q psy226          332 GHDNWVRGVTFHPGGKYLVSC-GDDKTLRVWDTAN  365 (406)
Q Consensus       332 ~h~~~v~~l~~s~~g~~l~sg-s~d~~i~vwd~~~  365 (406)
                      ...+.|.|-+|.+||+.|+.+ +..=.-+|||-..
T Consensus       153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence            456779999999999887654 3334568898543

>PRK10115 protease 2; Provisional

Probab=94.77  E-value=5.7  Score=40.72  Aligned_cols=110  Identities=4%  Similarity=0.019  Sum_probs=65.6

Q ss_pred             CeeeEEECCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC------CcEEEEE
Q psy226          150 SVQDIAFDQSGKLLVSCSA-----DMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD------KTIKMWE  218 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs~-----d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d------~~i~iwd  218 (406)
                      .+..+.++|+|++|+-+..     ...+++-|+.++..+.......  -..++|.++++.|+....+      ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4667889999998876532     2358888988775332221111  1469999999866655432      3577888


Q ss_pred             cCCC--eEEEEeecCCccEE-EEEECCCCCEEEEEeC---CCeEEEEeC
Q psy226          219 VATG--YCVKTLTGHREWVR-QIKVSPDGTLLASCSN---DHTARVWSL  261 (406)
Q Consensus       219 ~~~~--~~~~~~~~~~~~v~-~l~~~~~~~~l~s~~~---d~~v~vwd~  261 (406)
                      +.++  .....+........ .+..+.++++++..+.   ++.+.+++.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            8887  33333433222222 3344557776554443   456788884

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.74  E-value=6  Score=40.86  Aligned_cols=198  Identities=13%  Similarity=0.131  Sum_probs=106.4

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeEEEEeecCCcc--------EEEEEEC----------------CCCCEEEEEeCCCeEE
Q psy226          202 SDFVLSASRDKTIKMWEVATGYCVKTLTGHREW--------VRQIKVS----------------PDGTLLASCSNDHTAR  257 (406)
Q Consensus       202 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~l~~~----------------~~~~~l~s~~~d~~v~  257 (406)
                      ++.++.++.++.|.-.|..+|+.+-.+......        .+.+++-                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567777888888888899888887776533211        1223321                1234788888999999


Q ss_pred             EEeCCCccceeEEecCCceEEEEEeCCCCCcccc--ccccCCCCCCCCCCEEEEEeC----------CCcEEEEECCCCe
Q psy226          258 VWSLATKETKAELRGHDHTVECVAWAPGVASESI--SEAAGRPPGQGGGPYLATGSR----------DKTIKLWDVGSGS  325 (406)
Q Consensus       258 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~----------d~~i~lwd~~~~~  325 (406)
                      -.|..+++..-.+.. ...+   .|..+......  ......+. - .+..++.|+.          +|.|+-+|..+|+
T Consensus       274 ALDA~TGk~~W~fg~-~G~v---dl~~~~g~~~~g~~~~ts~P~-V-~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTV---DLTAGMGTTPPGYYYPTSPPL-V-AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             EEECCCCCEEEEecC-CCce---eeecccCcCCCcccccccCCE-E-ECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence            999998887655432 1111   11111000000  00000000 0 1234555542          6889999999999


Q ss_pred             EEEEEeCC---------Cc--------CE-EEEEEcCCCCEEEEEeC------------------CCeEEEEeCCCCccc
Q psy226          326 LLFTLIGH---------DN--------WV-RGVTFHPGGKYLVSCGD------------------DKTLRVWDTANKRNM  369 (406)
Q Consensus       326 ~~~~~~~h---------~~--------~v-~~l~~s~~g~~l~sgs~------------------d~~i~vwd~~~~~~~  369 (406)
                      .+-.+..-         .+        .+ ...+++|....++.+..                  .++|.-.|.++++..
T Consensus       348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~  427 (764)
T TIGR03074       348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER  427 (764)
T ss_pred             EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence            88765410         00        00 23455555444443221                  244555677777665


Q ss_pred             eeeccccceEEE---------EEEeC-CC---CEEEEeeCCCeEEEeec
Q psy226          370 KTLEAHSHFVTS---------LDFHR-AH---PYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       370 ~~l~~h~~~v~~---------l~~~~-~~---~~l~sgs~Dg~v~iw~~  405 (406)
                      =.++...+.+.+         +++.. ++   +.|+.++.+|.+.+.|-
T Consensus       428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr  476 (764)
T TIGR03074       428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDR  476 (764)
T ss_pred             EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEEC
Confidence            444331111111         12222 44   37888999999988874

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2280|consensus

Probab=94.59  E-value=3.2  Score=41.43  Aligned_cols=39  Identities=10%  Similarity=0.169  Sum_probs=31.6

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE  373 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~  373 (406)
                      +.+..++.||+.++|+--..+|.|.+-+....++.-+++
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            447778999999999999999999998887766655554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.35  E-value=3.4  Score=36.43  Aligned_cols=133  Identities=17%  Similarity=0.171  Sum_probs=78.3

Q ss_pred             CeeeEEECCCCCEEEEEe--C-CCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEE-cCCCeEE
Q psy226          150 SVQDIAFDQSGKLLVSCS--A-DMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE-VATGYCV  225 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs--~-d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd-~~~~~~~  225 (406)
                      .+.+.+++++|..++...  . ...+.++....  ....+. ....+..-.|.+++...+....+...+++. ..++...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688899999999877655  2 23455554332  222221 223678889999987777766677777774 3333222


Q ss_pred             E-Eee-c-CCccEEEEEECCCCCEEEEEe---CCCeEEEEeCCCcc---------ceeEEecCCceEEEEEeCCC
Q psy226          226 K-TLT-G-HREWVRQIKVSPDGTLLASCS---NDHTARVWSLATKE---------TKAELRGHDHTVECVAWAPG  285 (406)
Q Consensus       226 ~-~~~-~-~~~~v~~l~~~~~~~~l~s~~---~d~~v~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~  285 (406)
                      . ... . -...|..+.++|||..+|.-.   .++.|.+=-+....         ...........+..+.|.++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            1 111 1 112799999999999877655   35667665443111         11111123456778888763

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1916|consensus

Probab=93.92  E-value=0.068  Score=53.58  Aligned_cols=110  Identities=17%  Similarity=0.283  Sum_probs=71.6

Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEE-----------ECCCCCEEEEEeCCCcEEEEeCC-----
Q psy226          115 HPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIA-----------FDQSGKLLVSCSADMSLKLWDMS-----  178 (406)
Q Consensus       115 ~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~-----------~~~~g~~l~sgs~d~~i~vwd~~-----  178 (406)
                      -+...++..+-.+|+|++..+.+... ..+++|...+.+++           .+|||+.++.++.||.++.|.+.     
T Consensus       192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~  270 (1283)
T KOG1916|consen  192 AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKI  270 (1283)
T ss_pred             ccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccc
Confidence            33456777888899999887665432 44566877666543           58999999999999999998753     


Q ss_pred             CCeEEEEEecCC-cceEEEEEecCC---------CEEEEEeC-CCcEEEEEcCCCeEE
Q psy226          179 TYQCLKTMQGHD-HNVTGVAFLPNS---------DFVLSASR-DKTIKMWEVATGYCV  225 (406)
Q Consensus       179 ~~~~~~~~~~h~-~~v~~~~~~p~~---------~~l~s~s~-d~~i~iwd~~~~~~~  225 (406)
                      ...|++..+.|+ ++-.|.-|+.+.         .+++++++ ...+++|....-+|.
T Consensus       271 ~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  271 VHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            234556666676 443333344322         23455444 456888987655554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.81  E-value=5.4  Score=36.78  Aligned_cols=72  Identities=13%  Similarity=0.103  Sum_probs=43.8

Q ss_pred             EEeCCCcCEEEEEEcC-------CCCEEEEEeCCCeEEEEeCCCCccc---ee-eccccceEEEEEEeCCCCEEEEeeCC
Q psy226          329 TLIGHDNWVRGVTFHP-------GGKYLVSCGDDKTLRVWDTANKRNM---KT-LEAHSHFVTSLDFHRAHPYVVTGSVD  397 (406)
Q Consensus       329 ~~~~h~~~v~~l~~s~-------~g~~l~sgs~d~~i~vwd~~~~~~~---~~-l~~h~~~v~~l~~~~~~~~l~sgs~D  397 (406)
                      .+..| ..+..+.|-.       .|.++++.-..+.|....+.....+   .. +......+.++++.|||.+.++-+.+
T Consensus       248 ~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~  326 (331)
T PF07995_consen  248 AYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD  326 (331)
T ss_dssp             EETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred             eecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence            34434 4466677654       3556666666678877776543222   12 23344479999999999998888888


Q ss_pred             CeEE
Q psy226          398 KTVK  401 (406)
Q Consensus       398 g~v~  401 (406)
                      |.|.
T Consensus       327 G~iy  330 (331)
T PF07995_consen  327 GKIY  330 (331)
T ss_dssp             TTEE
T ss_pred             CeEe
Confidence            8763

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.65  E-value=2.1  Score=41.54  Aligned_cols=148  Identities=11%  Similarity=0.207  Sum_probs=82.3

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCcEEEEecccccCeeeEEECCCC----CEEEEEeCCCcEEEEeCC--
Q psy226          107 SPVIKVIFHPVFSLMASCS--EDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG----KLLVSCSADMSLKLWDMS--  178 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs--~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g----~~l~sgs~d~~i~vwd~~--  178 (406)
                      .||..++|..-...+.|.-  ..|.+++=|   .    ..-|.-..|..+.|.|-+    ..|+..-....|.||.+.  
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s----~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---S----KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC---c----cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            4677888874434444442  222222211   1    122334558899998853    244445567889999875  


Q ss_pred             ---CCeEEEEEecC---Ccce--EEEEEecCCCEEEEEeCCCcEEEEEcCCC--eEEEEeecCCccEEEEEECCCCCEEE
Q psy226          179 ---TYQCLKTMQGH---DHNV--TGVAFLPNSDFVLSASRDKTIKMWEVATG--YCVKTLTGHREWVRQIKVSPDGTLLA  248 (406)
Q Consensus       179 ---~~~~~~~~~~h---~~~v--~~~~~~p~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~  248 (406)
                         +.+.+..-..+   .-+|  .++.|+|....|++-.....-.++++...  .....+ ...+.|.|.+|.+||+.|+
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEE
Confidence               22222211111   1122  36789999887776544443345555432  222233 4457799999999998876


Q ss_pred             EEeC-CCeEEEEeCC
Q psy226          249 SCSN-DHTARVWSLA  262 (406)
Q Consensus       249 s~~~-d~~v~vwd~~  262 (406)
                      .+-. .=.-++||-.
T Consensus       172 VAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSA  186 (671)
T ss_pred             EEeCCeEEEEEecCc
Confidence            6543 3345678743

>PHA03098 kelch-like protein; Provisional

Probab=93.64  E-value=1.1  Score=44.33  Aligned_cols=141  Identities=7%  Similarity=0.035  Sum_probs=65.2

Q ss_pred             CCEEEEEeCC-----CcEEEEEcCCCcEEEEeccccc-CeeeEEECCCCCEEEEEeCC------CcEEEEeCCCCeEEE-
Q psy226          118 FSLMASCSED-----ATIRLWDYETGEYERALHGHLD-SVQDIAFDQSGKLLVSCSAD------MSLKLWDMSTYQCLK-  184 (406)
Q Consensus       118 ~~~latgs~d-----g~v~vwd~~~~~~~~~~~~h~~-~V~~l~~~~~g~~l~sgs~d------~~i~vwd~~~~~~~~-  184 (406)
                      +.+++.||.+     ..+..||..+++....-..... .-.+++. -++.+.+.|+.+      ..+..||..+.+... 
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            4556666654     3466778777654432111111 1111222 246666666632      357888987654321 


Q ss_pred             -EEecCCcceEEEEEecCCCEEEEEeCCC--------cEEEEEcCCCeEEEE--eecCCccEEEEEECCCCCEEEEEeCC
Q psy226          185 -TMQGHDHNVTGVAFLPNSDFVLSASRDK--------TIKMWEVATGYCVKT--LTGHREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       185 -~~~~h~~~v~~~~~~p~~~~l~s~s~d~--------~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                       .+...... .++.. .++...+.|+.+.        .+.+||..+..-...  +.........+.+  ++++++.|+.+
T Consensus       422 ~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~  497 (534)
T PHA03098        422 SPLPISHYG-GCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK  497 (534)
T ss_pred             CCCCccccC-ceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence             11111111 12222 2455556665432        377888876543221  1111111112222  56666666654


Q ss_pred             -----CeEEEEeCCC
Q psy226          254 -----HTARVWSLAT  263 (406)
Q Consensus       254 -----~~v~vwd~~~  263 (406)
                           +.+.+||..+
T Consensus       498 ~~~~~~~v~~yd~~~  512 (534)
T PHA03098        498 YEYYINEIEVYDDKT  512 (534)
T ss_pred             CCcccceeEEEeCCC
Confidence                 3566666554

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.62  E-value=1.7  Score=41.15  Aligned_cols=102  Identities=13%  Similarity=0.094  Sum_probs=61.5

Q ss_pred             cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCC-CCCCCCCCEEE
Q psy226          230 GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGR-PPGQGGGPYLA  308 (406)
Q Consensus       230 ~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~  308 (406)
                      .....+.+++.+|.+++.|+...=|.|.++|+.+...+...++....-..-...+............. ......--+++
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            34455788999999998888878899999999998887777776543211111111000000000000 00001122445


Q ss_pred             EEeCCCcEEEEECCCCeEEEEEe
Q psy226          309 TGSRDKTIKLWDVGSGSLLFTLI  331 (406)
Q Consensus       309 s~~~d~~i~lwd~~~~~~~~~~~  331 (406)
                      -+-..|.|.||.++.|..+..+.
T Consensus       385 yaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EeccCCeEEEEecCCCCEEEEEE
Confidence            56778999999999988876654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.55  E-value=5.4  Score=40.30  Aligned_cols=102  Identities=17%  Similarity=0.212  Sum_probs=69.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCC-------C-------------eEEEEEeCCCcCEEEEEEc--CCCCEEEEEeCCCeEEE
Q psy226          303 GGPYLATGSRDKTIKLWDVGS-------G-------------SLLFTLIGHDNWVRGVTFH--PGGKYLVSCGDDKTLRV  360 (406)
Q Consensus       303 ~~~~l~s~~~d~~i~lwd~~~-------~-------------~~~~~~~~h~~~v~~l~~s--~~g~~l~sgs~d~~i~v  360 (406)
                      +..+|+.+.+||.|.+|.+.+       .             ++.+.+. -...+.+++++  ...++||+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            456899999999999996521       0             0112222 23357889998  78889999988888998


Q ss_pred             EeCCC--Ccc-ceeeccccceEEEEEEeCCC------CEEEEeeCCCeEEEeec
Q psy226          361 WDTAN--KRN-MKTLEAHSHFVTSLDFHRAH------PYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       361 wd~~~--~~~-~~~l~~h~~~v~~l~~~~~~------~~l~sgs~Dg~v~iw~~  405 (406)
                      |-...  .+. ...-..|.+-|-+|+|-++.      -.|++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            85543  111 11111255668899997755      27889999999998875

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.17  E-value=5.1  Score=41.00  Aligned_cols=28  Identities=11%  Similarity=0.258  Sum_probs=21.0

Q ss_pred             cceEEEEEecCCCEEEEEeCCCcEEEEEc
Q psy226          191 HNVTGVAFLPNSDFVLSASRDKTIKMWEV  219 (406)
Q Consensus       191 ~~v~~~~~~p~~~~l~s~s~d~~i~iwd~  219 (406)
                      -.|..+.++|+|.+|+..|..| |.|-.+
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLEL  112 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence            4688899999999988877755 444444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.99  E-value=0.47  Score=28.60  Aligned_cols=33  Identities=15%  Similarity=0.329  Sum_probs=26.6

Q ss_pred             cceEEEEEecCC---CEEEEEeCCCcEEEEEcCCCe
Q psy226          191 HNVTGVAFLPNS---DFVLSASRDKTIKMWEVATGY  223 (406)
Q Consensus       191 ~~v~~~~~~p~~---~~l~s~s~d~~i~iwd~~~~~  223 (406)
                      +.|.+++|+|..   ++|+.+-.-+.|.++|++++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f   36 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF   36 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence            368899999854   488888888999999998643

It contains a characteristic DLL sequence motif.

>KOG1983|consensus

Probab=92.82  E-value=3.7  Score=43.70  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=27.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGE  139 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~  139 (406)
                      .....++|.|...++|.|..+|.|+++-...-+
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceE
Confidence            455678999999999999999999999655433

>KOG1897|consensus

Probab=92.77  E-value=14  Score=38.42  Aligned_cols=97  Identities=9%  Similarity=0.148  Sum_probs=68.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--cceee-ccccceE
Q psy226          303 GGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR--NMKTL-EAHSHFV  379 (406)
Q Consensus       303 ~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~--~~~~l-~~h~~~v  379 (406)
                      +|+++|  +-...|++|+..+.+.++.-..|...+..+...-.|.+++.|..-++|.+...+..+  .+..- ..+...+
T Consensus       839 ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wm  916 (1096)
T KOG1897|consen  839 NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWM  916 (1096)
T ss_pred             CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccce
Confidence            455554  456789999999988887777788889999999999999999998888876554322  22111 3466678


Q ss_pred             EEEEEeCCCCEEEEeeCCCeEEE
Q psy226          380 TSLDFHRAHPYVVTGSVDKTVKV  402 (406)
Q Consensus       380 ~~l~~~~~~~~l~sgs~Dg~v~i  402 (406)
                      +++.+-.+..|+. +-.+|.+.+
T Consensus       917 taveil~~d~ylg-ae~~gNlf~  938 (1096)
T KOG1897|consen  917 TAVEILDDDTYLG-AENSGNLFT  938 (1096)
T ss_pred             eeEEEecCceEEe-ecccccEEE
Confidence            8888776666554 344555443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.70  E-value=0.64  Score=28.04  Aligned_cols=30  Identities=23%  Similarity=0.290  Sum_probs=25.5

Q ss_pred             CEEEEEEcCCC---CEEEEEeCCCeEEEEeCCC
Q psy226          336 WVRGVTFHPGG---KYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       336 ~v~~l~~s~~g---~~l~sgs~d~~i~vwd~~~  365 (406)
                      .|+++.|||..   .+|+-.-.-+.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            58999999854   5888888889999999985

It contains a characteristic DLL sequence motif.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.69  E-value=7.5  Score=35.18  Aligned_cols=268  Identities=15%  Similarity=0.161  Sum_probs=120.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-c-EEEE-eccc---ccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG-E-YERA-LHGH---LDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~-~-~~~~-~~~h---~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      -..++..|.|.....-+|+|. .|+|  +...+| + .... ....   .-...+|.|..+ ..+++| ..+. .+-...
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~-ll~T~D   88 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGL-LLHTTD   88 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETTE-EEEESS
T ss_pred             CCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCce-EEEecC
Confidence            345889999996666666665 4543  433333 2 1111 1111   123567777643 445544 4443 333333


Q ss_pred             CCeEEEEEe---cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC-CeE-EEEeecCCccEEEEEECCCCCEEEEEeCC
Q psy226          179 TYQCLKTMQ---GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT-GYC-VKTLTGHREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       179 ~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~-~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                      .++.-..+.   .-......+....++..++ ++..|.|.  -... |.. ......-...+..+..+++|.++++++..
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy--~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G  165 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIY--RTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG  165 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EE--EESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEE--EeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence            333222221   1122334444444443333 34445433  2222 221 12223444667888889999999888777


Q ss_pred             CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE-E-Ee
Q psy226          254 HTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF-T-LI  331 (406)
Q Consensus       254 ~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~-~-~~  331 (406)
                      ....-||.....=...-+.-...|..+.|.|+                  +...+ ....|.|++=+........ . +.
T Consensus       166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~------------------~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~  226 (302)
T PF14870_consen  166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD------------------GNLWM-LARGGQIQFSDDPDDGETWSEPII  226 (302)
T ss_dssp             SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT------------------S-EEE-EETTTEEEEEE-TTEEEEE---B-
T ss_pred             cEEEEecCCCccceEEccCccceehhceecCC------------------CCEEE-EeCCcEEEEccCCCCccccccccC
Confidence            77778886432112222334567899999884                  22323 3477878777622211111 1 11


Q ss_pred             C--CCc-CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec---cccceEEEEEEeCCCCEEEEeeCCCeEEEe
Q psy226          332 G--HDN-WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE---AHSHFVTSLDFHRAHPYVVTGSVDKTVKVW  403 (406)
Q Consensus       332 ~--h~~-~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~---~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw  403 (406)
                      .  -.. .+..++|.+++...++|+. |.+. .....++.-+.-.   .-....+.+.|.+..+-+|- +.||.+.-|
T Consensus       227 ~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~  301 (302)
T PF14870_consen  227 PIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY  301 (302)
T ss_dssp             TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             CcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence            1  122 3789999998877776665 4443 3445555443332   22334778888766555554 468877655

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.44  E-value=10  Score=36.07  Aligned_cols=147  Identities=16%  Similarity=0.188  Sum_probs=81.6

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCeE--EEE-e-ecCCccEEEEEECC-----CCCEEEEEeCCCeEEEEeCCCccc------
Q psy226          202 SDFVLSASRDKTIKMWEVATGYC--VKT-L-TGHREWVRQIKVSP-----DGTLLASCSNDHTARVWSLATKET------  266 (406)
Q Consensus       202 ~~~l~s~s~d~~i~iwd~~~~~~--~~~-~-~~~~~~v~~l~~~~-----~~~~l~s~~~d~~v~vwd~~~~~~------  266 (406)
                      .+.+++||..|.++||+...+..  ... + ..-..+|..+...+     +...||. =.-+.+.||.+.....      
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            35899999999999998754321  011 1 12245676666532     2223333 4456677777632111      


Q ss_pred             ---eeEEecCC--ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEE
Q psy226          267 ---KAELRGHD--HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT  341 (406)
Q Consensus       267 ---~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~  341 (406)
                         +..+..|.  .....+...|             ..+..+..++.+-+.||.+.+|+-......+.+.+ ---...++
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~-------------Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~  181 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGP-------------FGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLC  181 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEE-------------CCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeE
Confidence               11111221  1112222222             11122246888999999999999765443333333 22234567


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeC
Q psy226          342 FHPGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       342 ~s~~g~~l~sgs~d~~i~vwd~  363 (406)
                      |.|.-..+++++.+..+..|..
T Consensus       182 Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  182 YCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             EeecCCEEEEecCceeEEEecH
Confidence            7788788888888877777753

>PRK13684 Ycf48-like protein; Provisional

Probab=92.42  E-value=8.9  Score=35.40  Aligned_cols=268  Identities=14%  Similarity=0.113  Sum_probs=122.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-Cc-EEEEec---ccccCeeeEEECCCCCEEEEEeCCCcEEEE-eC-C
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYET-GE-YERALH---GHLDSVQDIAFDQSGKLLVSCSADMSLKLW-DM-S  178 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~-~~-~~~~~~---~h~~~V~~l~~~~~g~~l~sgs~d~~i~vw-d~-~  178 (406)
                      ..++++|.|.....-+|+|. +|.|  |-..+ |+ ..+...   .....+.++.|.++ ..+++| ..+.|..- |- .
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~i~~S~DgG~  119 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSLLLHTTDGGK  119 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCceEEEECCCCC
Confidence            56889999987777777775 4433  33322 22 111111   11234677888643 344443 44443221 11 1


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ecCCccEEEEEECCCCCEEEEEeCCCeEE
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL-TGHREWVRQIKVSPDGTLLASCSNDHTAR  257 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~d~~v~  257 (406)
                      +++.+..-.........+.....+...+ ++..|.|..=+ ..|+.-..+ .+-...+..+.+.|++.+++++. .|.+.
T Consensus       120 tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i~  196 (334)
T PRK13684        120 NWTRIPLSEKLPGSPYLITALGPGTAEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNFY  196 (334)
T ss_pred             CCeEccCCcCCCCCceEEEEECCCccee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceEE
Confidence            2222211000111112222222222223 33344332211 112211111 12234678889999887665554 44443


Q ss_pred             -EEeCCCccceeE-EecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC---
Q psy226          258 -VWSLATKETKAE-LRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG---  332 (406)
Q Consensus       258 -vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~---  332 (406)
                       .+|-. ++.-.. ...-...+..+.+.|                  ++..+++ +..|.+++=....|..-.....   
T Consensus       197 ~s~~~g-g~tW~~~~~~~~~~l~~i~~~~------------------~g~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~  256 (334)
T PRK13684        197 STWEPG-QTAWTPHQRNSSRRLQSMGFQP------------------DGNLWML-ARGGQIRFNDPDDLESWSKPIIPEI  256 (334)
T ss_pred             EEcCCC-CCeEEEeeCCCcccceeeeEcC------------------CCCEEEE-ecCCEEEEccCCCCCccccccCCcc
Confidence             22211 111111 112234555666655                  2344444 3456554322222222111111   


Q ss_pred             -CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc---ccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          333 -HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA---HSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       333 -h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~---h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                       -...+.++.+.|++..++ ++.+|.|. .....++.......   -....+.+.|..++..+++| ..|.|.-|+
T Consensus       257 ~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~  329 (334)
T PRK13684        257 TNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYV  329 (334)
T ss_pred             ccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEEEec
Confidence             123477889999877655 45567664 34444554443321   12347778888777777755 578777664

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.40  E-value=1  Score=38.74  Aligned_cols=64  Identities=11%  Similarity=0.190  Sum_probs=47.4

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCcEEEE-------ec-------ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          114 FHPVFSLMASCSEDATIRLWDYETGEYERA-------LH-------GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       114 ~~p~~~~latgs~dg~v~vwd~~~~~~~~~-------~~-------~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      +...+.+|++-..+|.+++||+.+++....       +.       .....|..+.++.+|.-+++-+ +|....|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            556788899999999999999999865321       12       2446688888888887777654 4678888765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460|consensus

Probab=91.89  E-value=7.4  Score=37.37  Aligned_cols=27  Identities=22%  Similarity=0.097  Sum_probs=22.2

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEe
Q psy226          234 WVRQIKVSPDGTLLASCSNDHTARVWS  260 (406)
Q Consensus       234 ~v~~l~~~~~~~~l~s~~~d~~v~vwd  260 (406)
                      .|..+..++.|..++-.|.+|.+.++=
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEc
Confidence            467788899999999999999877654

>PHA02790 Kelch-like protein; Provisional

Probab=91.45  E-value=5.3  Score=39.02  Aligned_cols=129  Identities=8%  Similarity=-0.081  Sum_probs=58.6

Q ss_pred             CCEEEEEeCC--CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCC---cEEEEeCCCCeEEE--EEecCC
Q psy226          118 FSLMASCSED--ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADM---SLKLWDMSTYQCLK--TMQGHD  190 (406)
Q Consensus       118 ~~~latgs~d--g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~---~i~vwd~~~~~~~~--~~~~h~  190 (406)
                      +.+.+.|+.+  .++..||..+++....-.-....-......-+|++-+.|+.++   ++..||..+.+-..  .+....
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r  398 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH  398 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence            4555666653  3577788766654332111111111111122566667777553   47788877644321  111111


Q ss_pred             cceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEE--EeecCCccEEEEEECCCCCEEEEEeCC
Q psy226          191 HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVK--TLTGHREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       191 ~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                      ... +++ .-++...+.|+   .+.+||..+..-..  .+.........+.  -+|+..+.||.+
T Consensus       399 ~~~-~~~-~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~  456 (480)
T PHA02790        399 YKS-CAL-VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFY  456 (480)
T ss_pred             ccc-eEE-EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcC
Confidence            111 121 22455555553   46778887654321  1211112222222  256677777654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.32  E-value=2  Score=36.98  Aligned_cols=64  Identities=14%  Similarity=0.276  Sum_probs=47.9

Q ss_pred             EecCCCEEEEEeCCCcEEEEEcCCCeEEEEe-------e-------cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy226          198 FLPNSDFVLSASRDKTIKMWEVATGYCVKTL-------T-------GHREWVRQIKVSPDGTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       198 ~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~-------~-------~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~  262 (406)
                      +..++++|++-+.+|.+++||+.+++++..-       .       .....|..+.++.+|.-+++-++ |..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccc
Confidence            4457889999999999999999988754321       1       34566888888888887776654 677888754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2247|consensus

Probab=91.00  E-value=0.027  Score=52.53  Aligned_cols=133  Identities=14%  Similarity=0.161  Sum_probs=91.5

Q ss_pred             eeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEE-EEEeCCCcEEEEEcCCCeEEEEee
Q psy226          151 VQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFV-LSASRDKTIKMWEVATGYCVKTLT  229 (406)
Q Consensus       151 V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~  229 (406)
                      .....|-+.+.-++.++.+..+..||-.. +..... ........++|..+++.+ +.+-..+.+.+||+.+....+.-.
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhc-ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence            33456777777788888999999998543 222222 233455678888777754 446678899999997653222111


Q ss_pred             cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCC
Q psy226          230 GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPG  285 (406)
Q Consensus       230 ~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  285 (406)
                      +.+..-.-+.|++.+..++.+...|.+.+++..+.+....+..|...+.+++|.+.
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE  170 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE  170 (615)
T ss_pred             cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence            11111122678888888888889999999999887777666668889999998773

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.02  E-value=11  Score=31.84  Aligned_cols=102  Identities=14%  Similarity=0.069  Sum_probs=54.3

Q ss_pred             CCCEEEEEeCC--CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEE-EEEeCCCcEEEEEcCCCeEEEEeecCCccE
Q psy226          159 SGKLLVSCSAD--MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFV-LSASRDKTIKMWEVATGYCVKTLTGHREWV  235 (406)
Q Consensus       159 ~g~~l~sgs~d--~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v  235 (406)
                      +|.++.+.+.-  ..|++||+.+++.+....-....+.+=-...-++++ .-.-.+|.-..+|..+.+++..+.- .+.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence            34556555543  469999999888765543322223221111223332 2335678888888888766655431 1111


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy226          236 RQIKVSPDGTLLASCSNDHTARVWSLAT  263 (406)
Q Consensus       236 ~~l~~~~~~~~l~s~~~d~~v~vwd~~~  263 (406)
                      ..+  ..|+..+..+....+++.-|..+
T Consensus       134 WgL--t~d~~~LimsdGsatL~frdP~t  159 (262)
T COG3823         134 WGL--TSDDKNLIMSDGSATLQFRDPKT  159 (262)
T ss_pred             eee--ecCCcceEeeCCceEEEecCHHH
Confidence            222  33455566555555666666544

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.01  E-value=14  Score=33.01  Aligned_cols=268  Identities=14%  Similarity=0.120  Sum_probs=135.9

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc-cc-cCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC---eE
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHG-HL-DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY---QC  182 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~-h~-~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~---~~  182 (406)
                      -+..+.++.  ++...+.++.-++|.|+.+..-...+.. .+ +--.++..  .|++...+..|.-+.+.|+.+.   +.
T Consensus        88 l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          88 LFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCcee
Confidence            344555554  4566667788899999987653222211 11 22334444  5788888876666778888643   23


Q ss_pred             EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC---CccEEEEEECCCCCEEEEEeCCCeEEEE
Q psy226          183 LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH---REWVRQIKVSPDGTLLASCSNDHTARVW  259 (406)
Q Consensus       183 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---~~~v~~l~~~~~~~~l~s~~~d~~v~vw  259 (406)
                      ..........-..++.+  |++...+..|+-+.+-|+....... |.+|   ...+.++..+++.-+++..  +--+.+-
T Consensus       164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPv-li~~~n~g~g~~sv~vsdnr~y~vvy--~egvliv  238 (370)
T COG5276         164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPV-LIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIV  238 (370)
T ss_pred             eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCe-EEEEEecCCceEEEEecCCeeEEEEc--ccceEEE
Confidence            33333333333455554  6777888899999999997653322 2222   2246667666665555443  4456666


Q ss_pred             eCCCccceeEEecCC-ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC----C
Q psy226          260 SLATKETKAELRGHD-HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH----D  334 (406)
Q Consensus       260 d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h----~  334 (406)
                      |.........+...+ ..+.++.--                 .-.+.+...+..+.-+-+-|+.+....+ +.+|    .
T Consensus       239 d~s~~ssp~~~gsyet~~p~~~s~v-----------------~Vs~~~~Yvadga~gl~~idisnp~spf-l~ss~~t~g  300 (370)
T COG5276         239 DVSGPSSPTVFGSYETSNPVSISTV-----------------PVSGEYAYVADGAKGLPIIDISNPPSPF-LSSSLDTAG  300 (370)
T ss_pred             ecCCCCCceEeeccccCCcccccce-----------------ecccceeeeeccccCceeEeccCCCCCc-hhccccCCC
Confidence            766554333332111 111111000                 0023444455555555555554322111 1111    1


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ..-..+..  .|.++..+..+ ..-+-|....+.+....+.-..+.+.+.+-+.+++-+...++-+.+|+.
T Consensus       301 ~~a~gi~a--y~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         301 YQAAGIRA--YGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             ccccceEE--ecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            01222222  23344444333 3344455444443333333233444444445567888888999999985

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.85  E-value=18  Score=34.25  Aligned_cols=146  Identities=12%  Similarity=0.048  Sum_probs=79.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe-----EE
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ-----CL  183 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~-----~~  183 (406)
                      ...+...+++.+++.|..-..++-||-........-..-...++++.|.++|..++++ .+|.+. |....++     ..
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f  318 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF  318 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence            3445566777777766544333344422111122222334568899999998877765 556543 3333332     12


Q ss_pred             EEEec--CCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee---cCCccEEEEEECCCCCEEEEEeCCCeEEE
Q psy226          184 KTMQG--HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT---GHREWVRQIKVSPDGTLLASCSNDHTARV  258 (406)
Q Consensus       184 ~~~~~--h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~s~~~d~~v~v  258 (406)
                      .....  -...+.++.|.+++..+ .++.+|.+.... ..|+.-....   .-......+.|.++++.+++| .+|.|.-
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~-a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~  395 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAW-AAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR  395 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEE-EEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence            22211  12358889998776655 455677666553 3333322222   223457788887777666655 5666544


Q ss_pred             E
Q psy226          259 W  259 (406)
Q Consensus       259 w  259 (406)
                      |
T Consensus       396 ~  396 (398)
T PLN00033        396 Y  396 (398)
T ss_pred             e
Confidence            3

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.83  E-value=2.3  Score=35.09  Aligned_cols=27  Identities=7%  Similarity=0.083  Sum_probs=23.9

Q ss_pred             eEEEEEEeCCC------CEEEEeeCCCeEEEee
Q psy226          378 FVTSLDFHRAH------PYVVTGSVDKTVKVWE  404 (406)
Q Consensus       378 ~v~~l~~~~~~------~~l~sgs~Dg~v~iw~  404 (406)
                      .|.+++|+|.|      ++||+-..+|.|.||.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~  119 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG  119 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence            68899999965      5899999999999996

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4460|consensus

Probab=89.76  E-value=4.7  Score=38.62  Aligned_cols=74  Identities=11%  Similarity=0.164  Sum_probs=48.7

Q ss_pred             eeeEEECCCCCEEEEEeCCCcEEEEe---------CCCCeEE---EEE--------ecCCcceEEEEEecCC---CEEEE
Q psy226          151 VQDIAFDQSGKLLVSCSADMSLKLWD---------MSTYQCL---KTM--------QGHDHNVTGVAFLPNS---DFVLS  207 (406)
Q Consensus       151 V~~l~~~~~g~~l~sgs~d~~i~vwd---------~~~~~~~---~~~--------~~h~~~v~~~~~~p~~---~~l~s  207 (406)
                      |..+..++.|..++-.+.+|.+..+=         ++.++..   +++        ....-.+..++|+|+.   ..|+.
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~i  185 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVL  185 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEE
Confidence            66778899999999888998765542         1223211   111        0111235568899976   47777


Q ss_pred             EeCCCcEEEEEcCCCeE
Q psy226          208 ASRDKTIKMWEVATGYC  224 (406)
Q Consensus       208 ~s~d~~i~iwd~~~~~~  224 (406)
                      -+.|.+||+||+.....
T Consensus       186 L~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  186 LTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EecCcEEEEEecCCcch
Confidence            88999999999865443

>KOG2247|consensus

Probab=89.51  E-value=0.036  Score=51.74  Aligned_cols=143  Identities=17%  Similarity=0.238  Sum_probs=94.2

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEecCCc
Q psy226          113 IFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV-SCSADMSLKLWDMSTYQCLKTMQGHDH  191 (406)
Q Consensus       113 ~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~-sgs~d~~i~vwd~~~~~~~~~~~~h~~  191 (406)
                      .|-|.+.-++.++.+..|..||-....... + ..++...+++|..+|..++ .+-..+.+.+||+.+......-.+-++
T Consensus        41 ~w~~e~~nlavaca~tiv~~YD~agq~~le-~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~  118 (615)
T KOG2247|consen   41 RWRPEGHNLAVACANTIVIYYDKAGQVILE-L-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTS  118 (615)
T ss_pred             eEecCCCceehhhhhhHHHhhhhhcceecc-c-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcc
Confidence            455665557778888889999855432221 1 1344566788888877554 456678999999975321111111122


Q ss_pred             ceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Q psy226          192 NVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV  258 (406)
Q Consensus       192 ~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~v  258 (406)
                      .-.=+.|++....++.+...+.+.+++-.+.+.+.....|...+.++++.+.+. .+.++.|..+.+
T Consensus       119 s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v  184 (615)
T KOG2247|consen  119 SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSV  184 (615)
T ss_pred             hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHH
Confidence            222277888888888888999999999887766555555889999999998875 455555554433

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=89.21  E-value=21  Score=34.15  Aligned_cols=31  Identities=23%  Similarity=0.455  Sum_probs=25.1

Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~  365 (406)
                      ..|.+++..+..+.|++-..+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3488999999889999999999999999964

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.16  E-value=3.3  Score=41.20  Aligned_cols=72  Identities=19%  Similarity=0.364  Sum_probs=45.5

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCC----Cc-EEEEecc-c--------------------ccCeeeEEECC----CCCEEEE
Q psy226          116 PVFSLMASCSEDATIRLWDYET----GE-YERALHG-H--------------------LDSVQDIAFDQ----SGKLLVS  165 (406)
Q Consensus       116 p~~~~latgs~dg~v~vwd~~~----~~-~~~~~~~-h--------------------~~~V~~l~~~~----~g~~l~s  165 (406)
                      ++...++.+..||.+.......    +. ....... +                    ...+.+++++.    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            5667888888999988887654    21 2211111 1                    12345566665    6689999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEEe
Q psy226          166 CSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       166 gs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      -+.|+++|+||+.+++++.+..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1900|consensus

Probab=89.10  E-value=5.1  Score=42.70  Aligned_cols=160  Identities=18%  Similarity=0.258  Sum_probs=88.6

Q ss_pred             eCCCcEEEEeCCCCeEEEEEecCCcceEEEEEe-c-------CCCEEEEEeCCCcEEEEEcC----CCeEE-----EEee
Q psy226          167 SADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFL-P-------NSDFVLSASRDKTIKMWEVA----TGYCV-----KTLT  229 (406)
Q Consensus       167 s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-p-------~~~~l~s~s~d~~i~iwd~~----~~~~~-----~~~~  229 (406)
                      +.|..+.+|+.+++.....+.+-++.|..+..- |       .=++++.-+.--.|.++-+.    ++...     ..+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            468889999999877677777777777766543 2       22344444444445555332    21110     1222


Q ss_pred             cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE
Q psy226          230 GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT  309 (406)
Q Consensus       230 ~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  309 (406)
                      .....|+++....+|+.|.+|-.|   .+|.+.-...-             .|....                ..++..+
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~-------------gWf~~r----------------c~Kiclt  223 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAED-------------GWFGSR----------------CRKICLT  223 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccC-------------chhhcc----------------cccccCc
Confidence            234567888878888877776544   55654211000             000000                0001111


Q ss_pred             EeCCCcEEEEECCCCeEEEEE-eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy226          310 GSRDKTIKLWDVGSGSLLFTL-IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       310 ~~~d~~i~lwd~~~~~~~~~~-~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~  365 (406)
                      .+.-..+-    .+   +..+ ..+.++|..++.......+.+=+..|+|.+||+..
T Consensus       224 ~s~ls~lv----Ps---~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  224 KSVLSSLV----PS---LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhHHHHhh----hh---hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            11000000    00   1122 25677899999998888999999999999999865

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=89.07  E-value=8.9  Score=34.31  Aligned_cols=91  Identities=16%  Similarity=0.351  Sum_probs=58.3

Q ss_pred             CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe------CCCcEEEEeCCCCeEEEEEec-----CCcceEEE
Q psy226          128 ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS------ADMSLKLWDMSTYQCLKTMQG-----HDHNVTGV  196 (406)
Q Consensus       128 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs------~d~~i~vwd~~~~~~~~~~~~-----h~~~v~~~  196 (406)
                      ..|++||..+.+....-.+=.+.|+++.|..+.++++.|.      ....+-.||+.+... ..+.+     -..+|..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence            4599999999887766666667899999987777777764      355688899876542 23333     13677777


Q ss_pred             EEec-CCC-EEEEEe-CCC--cEEEEEc
Q psy226          197 AFLP-NSD-FVLSAS-RDK--TIKMWEV  219 (406)
Q Consensus       197 ~~~p-~~~-~l~s~s-~d~--~i~iwd~  219 (406)
                      .+.. ++. ..+.|. .++  .|..||-
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dG  122 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDG  122 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcC
Confidence            7743 333 343433 233  3555654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.03  E-value=2.7  Score=41.82  Aligned_cols=71  Identities=24%  Similarity=0.387  Sum_probs=44.0

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCC----CeEEEE-Eec---------------------CCcceEEEEEec----CCCEEEE
Q psy226          158 QSGKLLVSCSADMSLKLWDMST----YQCLKT-MQG---------------------HDHNVTGVAFLP----NSDFVLS  207 (406)
Q Consensus       158 ~~g~~l~sgs~d~~i~vwd~~~----~~~~~~-~~~---------------------h~~~v~~~~~~p----~~~~l~s  207 (406)
                      ++...++.+..||.+.......    +..... ...                     ......++++++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3566788888899888776553    211111 110                     012345566665    6679999


Q ss_pred             EeCCCcEEEEEcCCCeEEEEe
Q psy226          208 ASRDKTIKMWEVATGYCVKTL  228 (406)
Q Consensus       208 ~s~d~~i~iwd~~~~~~~~~~  228 (406)
                      .+.|+++|+||+.++.++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999997665

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=88.96  E-value=22  Score=33.91  Aligned_cols=143  Identities=15%  Similarity=0.160  Sum_probs=85.7

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEE---EEec-ccccCeeeEEECC-----CCCEEEEEeCCCcEEEEeCCC--Ce----
Q psy226          117 VFSLMASCSEDATIRLWDYETGEYE---RALH-GHLDSVQDIAFDQ-----SGKLLVSCSADMSLKLWDMST--YQ----  181 (406)
Q Consensus       117 ~~~~latgs~dg~v~vwd~~~~~~~---~~~~-~h~~~V~~l~~~~-----~g~~l~sgs~d~~i~vwd~~~--~~----  181 (406)
                      ....+++||.+|.++||+-..+...   ..+. .-..+|..+..-.     +...||+ -.-..+.||.+..  +.    
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            3468999999999999997554321   1111 1235777776432     2234444 4456677777621  11    


Q ss_pred             ---EEEEEecCC--cceEEEEEecC-----CCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe
Q psy226          182 ---CLKTMQGHD--HNVTGVAFLPN-----SDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       182 ---~~~~~~~h~--~~v~~~~~~p~-----~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                         .+..+..|.  .....++.-|-     .+++.+=+.||.+.+++-+...-...+.+ ---...+.+.+.-..|++++
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s  193 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS  193 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence               122233332  23344444442     25788889999999998765433333332 22223477888888999999


Q ss_pred             CCCeEEEEeC
Q psy226          252 NDHTARVWSL  261 (406)
Q Consensus       252 ~d~~v~vwd~  261 (406)
                      .+..+..|..
T Consensus       194 ss~~l~~Yky  203 (418)
T PF14727_consen  194 SSWTLECYKY  203 (418)
T ss_pred             CceeEEEecH
Confidence            9999988865

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.91  E-value=15  Score=32.05  Aligned_cols=139  Identities=17%  Similarity=0.258  Sum_probs=74.3

Q ss_pred             EEEEEcCCCcEEEEeccccc-CeeeEEECCCCCEEEEEeC-C--CcEEEEeCCC--CeEE-EEE---ecCCcceEEEEEe
Q psy226          130 IRLWDYETGEYERALHGHLD-SVQDIAFDQSGKLLVSCSA-D--MSLKLWDMST--YQCL-KTM---QGHDHNVTGVAFL  199 (406)
Q Consensus       130 v~vwd~~~~~~~~~~~~h~~-~V~~l~~~~~g~~l~sgs~-d--~~i~vwd~~~--~~~~-~~~---~~h~~~v~~~~~~  199 (406)
                      -.+||..+++... +.-.++ -..+-.+-++|++|.+|+. |  ..+++++..+  ..+- ...   -.....--++...
T Consensus        48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            3578888876533 221111 2233456789999998875 2  4588887643  1111 000   0112233445567


Q ss_pred             cCCCEEEEEeCCC-cEEEEEcCC-Ce-E--EEEeec-----CCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeE
Q psy226          200 PNSDFVLSASRDK-TIKMWEVAT-GY-C--VKTLTG-----HREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAE  269 (406)
Q Consensus       200 p~~~~l~s~s~d~-~i~iwd~~~-~~-~--~~~~~~-----~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  269 (406)
                      |||+.|+.|+.+. +.-+|.-.. .. .  ...+..     ....-.-+...|+|++|+.+..+.  .|||..+...+..
T Consensus       127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~  204 (243)
T PF07250_consen  127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT  204 (243)
T ss_pred             CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence            8999888877764 445555421 11 1  111110     011112456789999999988764  4567766654444


Q ss_pred             Ee
Q psy226          270 LR  271 (406)
Q Consensus       270 ~~  271 (406)
                      +.
T Consensus       205 lP  206 (243)
T PF07250_consen  205 LP  206 (243)
T ss_pred             CC
Confidence            43

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=88.90  E-value=21  Score=33.80  Aligned_cols=143  Identities=13%  Similarity=0.219  Sum_probs=71.2

Q ss_pred             CCEEEEEe-CCCcEEEEEcCC----CcEEEEecc---cc----cCeeeEEECCCCCEEEEEeCC------CcEEEEeCCC
Q psy226          118 FSLMASCS-EDATIRLWDYET----GEYERALHG---HL----DSVQDIAFDQSGKLLVSCSAD------MSLKLWDMST  179 (406)
Q Consensus       118 ~~~latgs-~dg~v~vwd~~~----~~~~~~~~~---h~----~~V~~l~~~~~g~~l~sgs~d------~~i~vwd~~~  179 (406)
                      .++|+..+ .++.|.|.|+.+    .++.+.+..   +.    ..-..+..-|+|+.++|+-.|      |-+.+.|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            45565555 789999999884    345555543   11    112233445789888875432      4588888888


Q ss_pred             CeEEEEEecCC---cceEEEEEecCCCEEEEEeC--------------------CCcEEEEEcCCCeEEEEeecCCc--c
Q psy226          180 YQCLKTMQGHD---HNVTGVAFLPNSDFVLSASR--------------------DKTIKMWEVATGYCVKTLTGHRE--W  234 (406)
Q Consensus       180 ~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~--------------------d~~i~iwd~~~~~~~~~~~~~~~--~  234 (406)
                      ++.........   .--...-|.|..+.++|...                    -.++.+||+.+.+.++++.-...  -
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            87776664422   23456778888888887642                    36899999999999998865432  2


Q ss_pred             EEEEEEC--CCCCE-EEEEeCCCeEEEEe
Q psy226          235 VRQIKVS--PDGTL-LASCSNDHTARVWS  260 (406)
Q Consensus       235 v~~l~~~--~~~~~-l~s~~~d~~v~vwd  260 (406)
                      ...+.|.  |+..+ |+.+-...+|-.|-
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~  275 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFY  275 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEE
Confidence            3445554  44444 44444555555443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.78  E-value=3.3  Score=41.76  Aligned_cols=112  Identities=14%  Similarity=0.233  Sum_probs=73.3

Q ss_pred             CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCC-------C----cE-E-E-----Eec-ccccCeeeEEEC--CCCCEEE
Q psy226          108 PVIKVIFHP--VFSLMASCSEDATIRLWDYET-------G----EY-E-R-----ALH-GHLDSVQDIAFD--QSGKLLV  164 (406)
Q Consensus       108 ~V~~v~~~p--~~~~latgs~dg~v~vwd~~~-------~----~~-~-~-----~~~-~h~~~V~~l~~~--~~g~~l~  164 (406)
                      .|+.+....  ....|+.|..||.|.+|.+++       .    +. . +     .+. .-...+.+++++  ...++||
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence            355555443  346899999999999996532       0    00 0 0     011 112367788988  7778888


Q ss_pred             EEeCCCcEEEEeCCCC--eE-EEEEecCCcceEEEEEecCC---C---EEEEEeCCCcEEEEEc
Q psy226          165 SCSADMSLKLWDMSTY--QC-LKTMQGHDHNVTGVAFLPNS---D---FVLSASRDKTIKMWEV  219 (406)
Q Consensus       165 sgs~d~~i~vwd~~~~--~~-~~~~~~h~~~v~~~~~~p~~---~---~l~s~s~d~~i~iwd~  219 (406)
                      ++++...|.||-....  +. ...-..|.+.|-+++|.++.   .   .+++++-.|.+.+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            8888888888854321  11 11112367789999998754   2   6778899999988877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.76  E-value=6.8  Score=34.15  Aligned_cols=145  Identities=17%  Similarity=0.323  Sum_probs=73.3

Q ss_pred             EEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC-C--CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCcccc
Q psy226          215 KMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN-D--HTARVWSLATKETKAELRGHDHTVECVAWAPGVASESI  291 (406)
Q Consensus       215 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d--~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  291 (406)
                      .+||+.++.....-.....++..-.+-+||+++.+|+. |  ..+++++...................-.|.|....   
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~---  125 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT---  125 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE---
Confidence            36777776543322233445555667889999998875 2  34777765331100000000001112233332111   


Q ss_pred             ccccCCCCCCCCCCEEEEEeCCC-cEEEEECCC-Ce-EE-EEEeC------CCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy226          292 SEAAGRPPGQGGGPYLATGSRDK-TIKLWDVGS-GS-LL-FTLIG------HDNWVRGVTFHPGGKYLVSCGDDKTLRVW  361 (406)
Q Consensus       292 ~~~~~~~~~~~~~~~l~s~~~d~-~i~lwd~~~-~~-~~-~~~~~------h~~~v~~l~~s~~g~~l~sgs~d~~i~vw  361 (406)
                               =++|..++.|+.+. +..+|.-.. .. .. ..+..      ..+.=--+-.-|+|+.++.+..+.  .||
T Consensus       126 ---------L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~  194 (243)
T PF07250_consen  126 ---------LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIY  194 (243)
T ss_pred             ---------CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEE
Confidence                     12577777777664 455555421 11 11 11111      111122455679999998887654  467


Q ss_pred             eCCCCccceeec
Q psy226          362 DTANKRNMKTLE  373 (406)
Q Consensus       362 d~~~~~~~~~l~  373 (406)
                      |..+.+.++.+.
T Consensus       195 d~~~n~v~~~lP  206 (243)
T PF07250_consen  195 DYKTNTVVRTLP  206 (243)
T ss_pred             eCCCCeEEeeCC
Confidence            888776656553

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.54  E-value=10  Score=29.53  Aligned_cols=109  Identities=11%  Similarity=0.072  Sum_probs=64.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--------EEEEecccccCeeeEEECC-----CCCEEEEEeCCCcEEEEe
Q psy226          110 IKVIFHPVFSLMASCSEDATIRLWDYETGE--------YERALHGHLDSVQDIAFDQ-----SGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       110 ~~v~~~p~~~~latgs~dg~v~vwd~~~~~--------~~~~~~~h~~~V~~l~~~~-----~g~~l~sgs~d~~i~vwd  176 (406)
                      ..-.|....+.|+++...|.|.|++.....        .+..+ .-...|++|+-.+     +...|+.|+. .++..||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence            345677777889999999999999865432        12222 2345677775432     3457777765 5799999


Q ss_pred             CCCCeEEEEEecCCcceEEEEEecC---CCEEEEEeCCCcEEEEEcCC
Q psy226          177 MSTYQCLKTMQGHDHNVTGVAFLPN---SDFVLSASRDKTIKMWEVAT  221 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~v~~~~~~p~---~~~l~s~s~d~~i~iwd~~~  221 (406)
                      +....-+. .+.-.+.|.++.+-.-   ..-++..+.+..|.-+|..-
T Consensus        80 V~~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   80 VENNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG  126 (136)
T ss_pred             cccCchhh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence            98654331 2233456777766432   12344444455565555443

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.43  E-value=22  Score=33.30  Aligned_cols=189  Identities=18%  Similarity=0.272  Sum_probs=107.4

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEE----CCCCCE--EEEEeC-C---CcEEEEeCC--CCeEE
Q psy226          116 PVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAF----DQSGKL--LVSCSA-D---MSLKLWDMS--TYQCL  183 (406)
Q Consensus       116 p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~----~~~g~~--l~sgs~-d---~~i~vwd~~--~~~~~  183 (406)
                      |..++++.....+-+.+||+....+ ..+.  .+..+.+..    .-.|+.  |+.++. +   .+|++|.+.  ++. +
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~l-q~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L  141 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKEL-QSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L  141 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EE-EEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEE-Eeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence            4567888899999999999986654 4443  123333322    113332  444442 2   469999664  343 3


Q ss_pred             EEEecC-------CcceEEEEEe--c-CCC-EEEEEeCCCcEEEEEcC---CC----eEEEEeecCCccEEEEEECCCCC
Q psy226          184 KTMQGH-------DHNVTGVAFL--P-NSD-FVLSASRDKTIKMWEVA---TG----YCVKTLTGHREWVRQIKVSPDGT  245 (406)
Q Consensus       184 ~~~~~h-------~~~v~~~~~~--p-~~~-~l~s~s~d~~i~iwd~~---~~----~~~~~~~~~~~~v~~l~~~~~~~  245 (406)
                      ..+...       ...+..+|+-  | +|. +++....+|.+..|.+.   .+    ..++.|...+ .+..+..+....
T Consensus       142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-Q~EGCVVDDe~g  220 (381)
T PF02333_consen  142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-QPEGCVVDDETG  220 (381)
T ss_dssp             EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--EEEEEEETTTT
T ss_pred             eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-cceEEEEecccC
Confidence            333221       1346677764  3 344 66778889999888774   23    3566666543 678888888888


Q ss_pred             EEEEEeCCCeEEEEeCCCcc--c---eeEEec--CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEE
Q psy226          246 LLASCSNDHTARVWSLATKE--T---KAELRG--HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL  318 (406)
Q Consensus       246 ~l~s~~~d~~v~vwd~~~~~--~---~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~l  318 (406)
                      .|..+-.+.-|.-|+.+...  .   +....+  ....++.++.....              ...|.+++|.-.+++..+
T Consensus       221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~--------------~g~gYLivSsQG~~sf~V  286 (381)
T PF02333_consen  221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGS--------------DGKGYLIVSSQGDNSFAV  286 (381)
T ss_dssp             EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-C--------------CC-EEEEEEEGGGTEEEE
T ss_pred             CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecC--------------CCCeEEEEEcCCCCeEEE
Confidence            99999999888878765221  1   111111  23456666654321              113445666666789999


Q ss_pred             EECCC
Q psy226          319 WDVGS  323 (406)
Q Consensus       319 wd~~~  323 (406)
                      ||...
T Consensus       287 y~r~~  291 (381)
T PF02333_consen  287 YDREG  291 (381)
T ss_dssp             EESST
T ss_pred             EecCC
Confidence            99865

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.96  E-value=13  Score=35.69  Aligned_cols=147  Identities=12%  Similarity=0.198  Sum_probs=82.9

Q ss_pred             CCCEE-EEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEEC
Q psy226          243 DGTLL-ASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDV  321 (406)
Q Consensus       243 ~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~  321 (406)
                      +..++ ..|+.-..++--|+..++.+.+...|...  -+.|.|......+.          ... -+.|-.+..|.-.|.
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt----------~eq-tlvGlS~~svFrIDP  544 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMT----------DEQ-TLVGLSDYSVFRIDP  544 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcC----------ccc-eEEeecccceEEecc
Confidence            44444 34555666777777777777776666655  46677653322111          111 234445555555555


Q ss_pred             CC-CeEEEEEeCCCcCEEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeC
Q psy226          322 GS-GSLLFTLIGHDNWVRGVTFHP----GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSV  396 (406)
Q Consensus       322 ~~-~~~~~~~~~h~~~v~~l~~s~----~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~  396 (406)
                      +- |..+... .....++--.||.    ...|+|.+|..|-|++||.-..+....+.+-...|..+..+.+|.++++.+.
T Consensus       545 R~~gNKi~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         545 RARGNKIKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             cccCCceeee-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence            43 3222211 1112222222332    2458999999999999996544444455667778889999999987754443


Q ss_pred             CCeEEEee
Q psy226          397 DKTVKVWE  404 (406)
Q Consensus       397 Dg~v~iw~  404 (406)
                       ..+.+-|
T Consensus       624 -~yllL~d  630 (776)
T COG5167         624 -NYLLLTD  630 (776)
T ss_pred             -ceEEEEe
Confidence             3444444

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.88  E-value=3.3  Score=38.87  Aligned_cols=162  Identities=14%  Similarity=0.117  Sum_probs=90.6

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE--eccccc----Cee-eEEECCCCCEEEEEeCCCcEEE
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERA--LHGHLD----SVQ-DIAFDQSGKLLVSCSADMSLKL  174 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~--~~~h~~----~V~-~l~~~~~g~~l~sgs~d~~i~v  174 (406)
                      +..-.++|..+.+.|+++.|..-+. .++.|+++.+..+...  .....+    .|+ .+..-..|.-|+.++.||.|.-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            4444567888889999998776554 6788998876543221  111111    122 2223345677888999999988


Q ss_pred             E-eCCC-Ce----EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEE
Q psy226          175 W-DMST-YQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLA  248 (406)
Q Consensus       175 w-d~~~-~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  248 (406)
                      | |+.. ++    .++.++-...++..+.--.+.+-+++-+..|++..+-....+.+- +..--+.+.-+++||.+.+++
T Consensus       295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll  373 (733)
T COG4590         295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLL  373 (733)
T ss_pred             eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchhe
Confidence            8 4432 11    112222111223222211122345666677777766543322211 111122345688999999887


Q ss_pred             EEeCCCeEEEEeCCCccc
Q psy226          249 SCSNDHTARVWSLATKET  266 (406)
Q Consensus       249 s~~~d~~v~vwd~~~~~~  266 (406)
                      +- +.|.++++.+++..+
T Consensus       374 ~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         374 SE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             ee-cCCceEEEEecCCCC
Confidence            64 457789988876544

>KOG1900|consensus

Probab=86.92  E-value=13  Score=39.73  Aligned_cols=139  Identities=18%  Similarity=0.287  Sum_probs=85.0

Q ss_pred             eCCCeEEEEeCCCccceeEEecCCceEEEEEeC---CCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC----C
Q psy226          251 SNDHTARVWSLATKETKAELRGHDHTVECVAWA---PGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG----S  323 (406)
Q Consensus       251 ~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~----~  323 (406)
                      +.|+.+.+|+..+......+.+-.+.|..|...   |++..+.+             .+++.-+.--.|.++-+.    +
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I-------------qhlLvvaT~~ei~ilgV~~~~~~  162 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI-------------QHLLVVATPVEIVILGVSFDEFT  162 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh-------------heeEEecccceEEEEEEEecccc
Confidence            358899999999987777777777777666543   22222221             122222233345554331    1


Q ss_pred             CeE-----EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC----CCC---c-c----------------ceeec-
Q psy226          324 GSL-----LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT----ANK---R-N----------------MKTLE-  373 (406)
Q Consensus       324 ~~~-----~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~----~~~---~-~----------------~~~l~-  373 (406)
                      +..     ...+......|+++....+|+.+++|-+|   .+|.+    ..+   + +                +-.+. 
T Consensus       163 ~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~  239 (1311)
T KOG1900|consen  163 GELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG  239 (1311)
T ss_pred             CcccccccceeeecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence            111     02222334568899988899888766554   44432    111   1 1                11122 


Q ss_pred             cccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          374 AHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       374 ~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .+..+|..++.+....+|.+=+.-|+|.+|++
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i  271 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDI  271 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEc
Confidence            46778999999999999999999999999985

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=86.89  E-value=23  Score=31.86  Aligned_cols=230  Identities=17%  Similarity=0.220  Sum_probs=122.1

Q ss_pred             eeeEEECCCCCEEEEEeCCCcEEEEeCC------CC-eEEEEEec-----CCcceEEEEEecCCCE------------EE
Q psy226          151 VQDIAFDQSGKLLVSCSADMSLKLWDMS------TY-QCLKTMQG-----HDHNVTGVAFLPNSDF------------VL  206 (406)
Q Consensus       151 V~~l~~~~~g~~l~sgs~d~~i~vwd~~------~~-~~~~~~~~-----h~~~v~~~~~~p~~~~------------l~  206 (406)
                      -..|+++|.+.+-++...-+...+||..      .. ..+-++..     .....+.+.|+....+            ++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4578999999888887778899999986      11 12223321     1345778888754333            56


Q ss_pred             EEeCCCcEEEEEcCCCeE-----EEEee-cCCccE-EEEEECC--CCCEEE-EEeCCCeEEEEeCCCccceeEEecCCce
Q psy226          207 SASRDKTIKMWEVATGYC-----VKTLT-GHREWV-RQIKVSP--DGTLLA-SCSNDHTARVWSLATKETKAELRGHDHT  276 (406)
Q Consensus       207 s~s~d~~i~iwd~~~~~~-----~~~~~-~~~~~v-~~l~~~~--~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~  276 (406)
                      .++.||+|.=|.-.-+..     ...+. .....| ..+++..  .+.+|. +--..++|.|||-.-.... .-.....+
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~DP  183 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFIDP  183 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCccCC
Confidence            778999999998532211     11121 111222 2344443  344444 4446788888875432211 00000000


Q ss_pred             EEEEEeCCCCCcccc-----ccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe--CCCcCEEEEEEcC-----
Q psy226          277 VECVAWAPGVASESI-----SEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI--GHDNWVRGVTFHP-----  344 (406)
Q Consensus       277 v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~--~h~~~v~~l~~s~-----  344 (406)
                      -.-..|.|-.. ..+     ...+..   +.....=+.|..-|.|-+||+ .|+.++++.  +.-+.-..|+..|     
T Consensus       184 ~iPagyAPFnI-qnig~~lyVtYA~q---d~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~  258 (336)
T TIGR03118       184 ALPAGYAPFNV-QNLGGTLYVTYAQQ---DADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGS  258 (336)
T ss_pred             CCCCCCCCcce-EEECCeEEEEEEec---CCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCC
Confidence            00001111000 000     000000   000011122333467888987 577777663  2334455676655     


Q ss_pred             -CCCEEEEEeCCCeEEEEeCCCCccceeeccccc------eEEEEEEeC
Q psy226          345 -GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSH------FVTSLDFHR  386 (406)
Q Consensus       345 -~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~------~v~~l~~~~  386 (406)
                       .|..|+---.||+|..||..+++.+..|..-.+      ..+.|+|..
T Consensus       259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence             467787777799999999999887777754322      357888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2377|consensus

Probab=86.81  E-value=7.6  Score=36.66  Aligned_cols=113  Identities=11%  Similarity=0.249  Sum_probs=73.5

Q ss_pred             CCCCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE----EEecccccCeeeEEECCCCCEEEEEeCC
Q psy226           94 PRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE----RALHGHLDSVQDIAFDQSGKLLVSCSAD  169 (406)
Q Consensus        94 ~~~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~----~~~~~h~~~V~~l~~~~~g~~l~sgs~d  169 (406)
                      |..|..+... ..++|.++.|++|...+|.--.|.+|.+.+....+..    .+.+..+..|....|+.+ .-+|--+..
T Consensus        55 dDVpiSfdm~-d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~  132 (657)
T KOG2377|consen   55 DDVPISFDMD-DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ  132 (657)
T ss_pred             CCCCceeeec-CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecC
Confidence            3444444443 4459999999999999999999999999998443221    122233445888888765 445544444


Q ss_pred             CcEEEEeCCC-CeEEEEEecCCcceEEEEEecCCCEEEEEe
Q psy226          170 MSLKLWDMST-YQCLKTMQGHDHNVTGVAFLPNSDFVLSAS  209 (406)
Q Consensus       170 ~~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s  209 (406)
                      | +-+|.... ...++..+.|+..|.--.|.|+.+.++-++
T Consensus       133 G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  133 G-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             C-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            4 55665432 223455566778888888888877544433

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=86.67  E-value=24  Score=31.78  Aligned_cols=223  Identities=18%  Similarity=0.175  Sum_probs=123.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcC-------CCcEEEEecc-----cccCeeeEEECCCCC------------EEE
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYE-------TGEYERALHG-----HLDSVQDIAFDQSGK------------LLV  164 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~-------~~~~~~~~~~-----h~~~V~~l~~~~~g~------------~l~  164 (406)
                      -..|+|+|.+.+-++....+...+||..       ...+.-.+..     -....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4579999999999998899999999986       1123334432     123567777764332            367


Q ss_pred             EEeCCCcEEEEeCCCCeE-----EEEEe-cCCcce-EEEEEecC--CCEEEEE-eCCCcEEEEEcCCCeEE--EEeec--
Q psy226          165 SCSADMSLKLWDMSTYQC-----LKTMQ-GHDHNV-TGVAFLPN--SDFVLSA-SRDKTIKMWEVATGYCV--KTLTG--  230 (406)
Q Consensus       165 sgs~d~~i~vwd~~~~~~-----~~~~~-~h~~~v-~~~~~~p~--~~~l~s~-s~d~~i~iwd~~~~~~~--~~~~~--  230 (406)
                      .++.||+|.-|...-...     ...+. .....| ..+++-+.  +++|..+ -..++|.++|-.=....  ..+..  
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence            788999999998532111     11121 112333 35666543  4555554 35788999875321110  00100  


Q ss_pred             --------------CCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe--cCCceEEEEEeCCCCCccccccc
Q psy226          231 --------------HREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR--GHDHTVECVAWAPGVASESISEA  294 (406)
Q Consensus       231 --------------~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~  294 (406)
                                    ..-.|+-..-++++..=+.|-.-|.|-+||+.. ..++.+.  +.-.....++..|..        
T Consensus       185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~--------  255 (336)
T TIGR03118       185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPES--------  255 (336)
T ss_pred             CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhh--------
Confidence                          011122222233333333344456888888753 3333332  122223344444421        


Q ss_pred             cCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc------CEEEEEEcC
Q psy226          295 AGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN------WVRGVTFHP  344 (406)
Q Consensus       295 ~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~------~v~~l~~s~  344 (406)
                          .+...+.+|+.---||+|..||..+++.+-.+....+      ....|+|..
T Consensus       256 ----FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       256 ----FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             ----hCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence                1223567888888899999999998887766654332      245666654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=86.21  E-value=32  Score=32.90  Aligned_cols=30  Identities=30%  Similarity=0.558  Sum_probs=25.2

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy226          234 WVRQIKVSPDGTLLASCSNDHTARVWSLAT  263 (406)
Q Consensus       234 ~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~  263 (406)
                      .|.+++..+..+.+++.+.++.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            388899999889999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.11  E-value=2.9  Score=24.69  Aligned_cols=31  Identities=29%  Similarity=0.427  Sum_probs=23.2

Q ss_pred             CCCCEEEEE-eCCCeEEEEeCCCCccceeecc
Q psy226          344 PGGKYLVSC-GDDKTLRVWDTANKRNMKTLEA  374 (406)
Q Consensus       344 ~~g~~l~sg-s~d~~i~vwd~~~~~~~~~l~~  374 (406)
                      |++++|+++ -.+++|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            567766654 4688999999988877776654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.92  E-value=20  Score=30.28  Aligned_cols=103  Identities=15%  Similarity=0.069  Sum_probs=56.7

Q ss_pred             CCCEEEEEeCCC--cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEecCCcce
Q psy226          117 VFSLMASCSEDA--TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV-SCSADMSLKLWDMSTYQCLKTMQGHDHNV  193 (406)
Q Consensus       117 ~~~~latgs~dg--~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~-sgs~d~~i~vwd~~~~~~~~~~~~h~~~v  193 (406)
                      ++.++.+.+.-|  .|++||+.+|+.....+-..+.+..=-...-|..+. -.-.+|....+|..+.+++..+. .++.-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence            345666665433  599999999886654332212221111111122222 22367888889988877766543 23344


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q psy226          194 TGVAFLPNSDFVLSASRDKTIKMWEVATG  222 (406)
Q Consensus       194 ~~~~~~p~~~~l~s~s~d~~i~iwd~~~~  222 (406)
                      ++++.  ++..|+.++...+++.-|-++.
T Consensus       134 WgLt~--d~~~LimsdGsatL~frdP~tf  160 (262)
T COG3823         134 WGLTS--DDKNLIMSDGSATLQFRDPKTF  160 (262)
T ss_pred             eeeec--CCcceEeeCCceEEEecCHHHh
Confidence            55543  4555666665666776666554

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.80  E-value=23  Score=30.04  Aligned_cols=48  Identities=13%  Similarity=0.270  Sum_probs=34.6

Q ss_pred             CEEEEEeCCCcEEEEeCCC--CeEEEEEecCCcceEEEEEecCCCEEEEEe
Q psy226          161 KLLVSCSADMSLKLWDMST--YQCLKTMQGHDHNVTGVAFLPNSDFVLSAS  209 (406)
Q Consensus       161 ~~l~sgs~d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s  209 (406)
                      +.|+.+...+.|.+|++.+  .+.+.++.. -+.|..+.++..|++|+|--
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence            4454445667899999873  344455543 36899999999999999853

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.60  E-value=6.1  Score=23.21  Aligned_cols=31  Identities=16%  Similarity=0.085  Sum_probs=22.6

Q ss_pred             CCCCEEE-EEeCCCcEEEEEcCCCcEEEEecc
Q psy226          116 PVFSLMA-SCSEDATIRLWDYETGEYERALHG  146 (406)
Q Consensus       116 p~~~~la-tgs~dg~v~vwd~~~~~~~~~~~~  146 (406)
                      |+++.|. +...+++|.++|..+++....+.-
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5666544 455689999999998887776654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=84.49  E-value=6.8  Score=32.21  Aligned_cols=30  Identities=23%  Similarity=0.271  Sum_probs=25.1

Q ss_pred             cEEEEEECCCC------CEEEEEeCCCeEEEEeCCC
Q psy226          234 WVRQIKVSPDG------TLLASCSNDHTARVWSLAT  263 (406)
Q Consensus       234 ~v~~l~~~~~~------~~l~s~~~d~~v~vwd~~~  263 (406)
                      .+..++|||.|      -+|++.+.++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            68899999965      4789999999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.33  E-value=28  Score=31.20  Aligned_cols=115  Identities=14%  Similarity=0.189  Sum_probs=67.6

Q ss_pred             CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEe------CCCcEEEEEcCCCeEEEEeec-----CCccEEEE
Q psy226          170 MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS------RDKTIKMWEVATGYCVKTLTG-----HREWVRQI  238 (406)
Q Consensus       170 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~l  238 (406)
                      ..|++||..+.+-..--.+-.+.|.++.|..+.++++.|.      ....+..||..+..- ..+.+     -..+|..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence            3589999887665444445567899999986666666664      355688899876532 23333     23567777


Q ss_pred             EECC-CC-CEEEEEe-C--CCeEEEEeCCCccceeE-EecCCceEEEEEeCCC
Q psy226          239 KVSP-DG-TLLASCS-N--DHTARVWSLATKETKAE-LRGHDHTVECVAWAPG  285 (406)
Q Consensus       239 ~~~~-~~-~~l~s~~-~--d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~  285 (406)
                      .+.. |+ +..++|. .  +..|..||-.....+.. .......|..+.+.|-
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l  147 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL  147 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence            6632 33 3444443 2  33466676554443333 2223456777766653

>KOG2377|consensus

Probab=84.07  E-value=23  Score=33.66  Aligned_cols=113  Identities=10%  Similarity=0.209  Sum_probs=71.7

Q ss_pred             cccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE----EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC-
Q psy226          147 HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC----LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT-  221 (406)
Q Consensus       147 h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~----~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~-  221 (406)
                      ..++|.++.|++|.+.||+--.|.+|.+++....+.    ..+-+..+..|.+..|+.+ .-++.-+..| +-+|.... 
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            456899999999999999999999999998743221    1122223456888899865 4444444433 55665432 


Q ss_pred             CeEEEEeecCCccEEEEEECCCCCEEEEEe--CCCeEEEEeC
Q psy226          222 GYCVKTLTGHREWVRQIKVSPDGTLLASCS--NDHTARVWSL  261 (406)
Q Consensus       222 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~--~d~~v~vwd~  261 (406)
                      ...++..+.|+..|+-..|.++.+.++-++  ..+++.=+.+
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~  184 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF  184 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence            233455566777787788888877554333  3444433333

>KOG1983|consensus

Probab=83.92  E-value=55  Score=35.20  Aligned_cols=31  Identities=19%  Similarity=0.327  Sum_probs=26.1

Q ss_pred             cCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       149 ~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      .....++|+|.-.+++.|..+|.|+++-...
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccc
Confidence            3556789999999999999999999997543

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.80  E-value=6.5  Score=22.84  Aligned_cols=31  Identities=13%  Similarity=0.304  Sum_probs=19.2

Q ss_pred             eCCCcCEEEEEEcCCCCEEEEE-eCC--CeEEEE
Q psy226          331 IGHDNWVRGVTFHPGGKYLVSC-GDD--KTLRVW  361 (406)
Q Consensus       331 ~~h~~~v~~l~~s~~g~~l~sg-s~d--~~i~vw  361 (406)
                      ......-....|||||+.|+-+ ..+  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3344556788999999887644 444  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=82.73  E-value=36  Score=30.64  Aligned_cols=134  Identities=16%  Similarity=0.260  Sum_probs=77.1

Q ss_pred             cEEEEEcCCCcEEEEeccc------ccCeeeEEECCCC-----CEEEEE-eCCCcEEEEeCCCCeEEEEEecCC------
Q psy226          129 TIRLWDYETGEYERALHGH------LDSVQDIAFDQSG-----KLLVSC-SADMSLKLWDMSTYQCLKTMQGHD------  190 (406)
Q Consensus       129 ~v~vwd~~~~~~~~~~~~h------~~~V~~l~~~~~g-----~~l~sg-s~d~~i~vwd~~~~~~~~~~~~h~------  190 (406)
                      .|.+||+.+++.++++.-.      ....+++.+....     .+...+ +..+-+.|+|+.+++..+.+..+.      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            6888999999987776432      3456777776522     244333 344689999999887665554321      


Q ss_pred             -------------cceEEEEEec---CCCEEEEEeCCCcEEEEEcCCC--------------eEEEEeecCCccEEEEEE
Q psy226          191 -------------HNVTGVAFLP---NSDFVLSASRDKTIKMWEVATG--------------YCVKTLTGHREWVRQIKV  240 (406)
Q Consensus       191 -------------~~v~~~~~~p---~~~~l~s~s~d~~i~iwd~~~~--------------~~~~~~~~~~~~v~~l~~  240 (406)
                                   ..+.+++.+|   +++.|.-+...+. ++|-+.+.              ..++.+.........+++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence                         2245555554   4444444433221 23332210              011222111235567888


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCC
Q psy226          241 SPDGTLLASCSNDHTARVWSLAT  263 (406)
Q Consensus       241 ~~~~~~l~s~~~d~~v~vwd~~~  263 (406)
                      +++|.++++--..+.|..|+..+
T Consensus       194 D~~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  194 DPNGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             ETTTEEEEEECCCTEEEEEETTT
T ss_pred             CCCCcEEEecCCCCeEEEEeCCC
Confidence            99999999999999999999865

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=82.21  E-value=53  Score=32.24  Aligned_cols=272  Identities=13%  Similarity=0.067  Sum_probs=126.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccc-cCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHL-DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~-~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      ..+|.++.+.-.+ .+..|..|| +..||..+++....-.... .+|..+..+-.|. |-.|+.+| |.+.+........
T Consensus       164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~sn  239 (671)
T COG3292         164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRASN  239 (671)
T ss_pred             CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhccccc
Confidence            3467777777666 455677776 5567877777655444333 5666666665554 66677666 6666655422111


Q ss_pred             EEe-cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC--CccEEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy226          185 TMQ-GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH--REWVRQIKVSPDGTLLASCSNDHTARVWSL  261 (406)
Q Consensus       185 ~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~  261 (406)
                      -.. -....|..+.-..+| .+-.|+..|-.+.---+.+-.+...+.|  -..|.++..+.+|. +.+++.++.+++-+-
T Consensus       240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a  317 (671)
T COG3292         240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTA  317 (671)
T ss_pred             cCCCCcchheeeeecccCC-CEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEecc
Confidence            000 012223332222222 3445555553322111222222222222  23456666677776 566777777766443


Q ss_pred             CCccceeEEecCC-ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC-CCcCEEE
Q psy226          262 ATKETKAELRGHD-HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG-HDNWVRG  339 (406)
Q Consensus       262 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~-h~~~v~~  339 (406)
                      .- .....+.... ..+..++-.|..                .+..+--...-|.+.+-+-.+|..++.... -...|+.
T Consensus       318 ~w-~~ma~in~~dG~v~~~~~~a~~l----------------l~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~  380 (671)
T COG3292         318 DW-KRMAVINDSDGGVSQYEAVAPAL----------------LSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITT  380 (671)
T ss_pred             hh-hheeeeecCCCchhhhhccCchh----------------cccceeeccccceEEEecCCCCcEEEEeeeccccccch
Confidence            21 1111110000 000000101100                000011111112233334445554443222 1244666


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCC-Cccceeecc-ccceEEEEEEeCCCCEEEEeeCCCeEEE
Q psy226          340 VTFHPGGKYLVSCGDDKTLRVWDTAN-KRNMKTLEA-HSHFVTSLDFHRAHPYVVTGSVDKTVKV  402 (406)
Q Consensus       340 l~~s~~g~~l~sgs~d~~i~vwd~~~-~~~~~~l~~-h~~~v~~l~~~~~~~~l~sgs~Dg~v~i  402 (406)
                      +++..+|+.- .|+..+-+-.|+..+ +.......+ -.+.|..+-=.|+++ |.-|+.+|.++.
T Consensus       381 ~~~d~~g~lW-lgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~  443 (671)
T COG3292         381 TLEDSRGRLW-LGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR  443 (671)
T ss_pred             hhhccCCcEE-EEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence            6776655443 455553355566655 322222222 345688888889888 666888887764

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=82.20  E-value=44  Score=31.27  Aligned_cols=221  Identities=14%  Similarity=0.066  Sum_probs=0.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEecCC--cceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCC-ccEE
Q psy226          160 GKLLVSCSADMSLKLWDMSTYQCLKTMQGHD--HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR-EWVR  236 (406)
Q Consensus       160 g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-~~v~  236 (406)
                      +..+..+..||.|.-.|..++..+.....-.  ..+.+-.+..+|+ ++.++.++.+..+|..+|..+....... ..+.
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~  146 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA  146 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC--CC
Q psy226          237 QIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR--DK  314 (406)
Q Consensus       237 ~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--d~  314 (406)
                      .-.+-.++..++.. .++.+...|-.++..+-....... +......+....               ...++.+..  ++
T Consensus       147 ~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~---------------~~~vy~~~~~~~~  209 (370)
T COG1520         147 SPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIA---------------SGTVYVGSDGYDG  209 (370)
T ss_pred             cCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCc-cccccccCceee---------------cceEEEecCCCcc


Q ss_pred             cEEEEECCCCeEEEE-----EeCCCcC--EEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEe
Q psy226          315 TIKLWDVGSGSLLFT-----LIGHDNW--VRGVTFHP--GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFH  385 (406)
Q Consensus       315 ~i~lwd~~~~~~~~~-----~~~h~~~--v~~l~~s~--~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~  385 (406)
                      .+.-.|..+|.....     ..+....  ...+..-+  .+.-+..++.++.+...|..+++.+-.....      ..-.
T Consensus       210 ~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~------~~~~  283 (370)
T COG1520         210 ILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG------GSVQ  283 (370)
T ss_pred             eEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc------cEec


Q ss_pred             CCCCEEEEeeC-CCeEEEee
Q psy226          386 RAHPYVVTGSV-DKTVKVWE  404 (406)
Q Consensus       386 ~~~~~l~sgs~-Dg~v~iw~  404 (406)
                      ...-+...-.. ||.+.++.
T Consensus       284 ~~~~~~~~~~~~dG~v~~~~  303 (370)
T COG1520         284 GSGLYTTPVAGADGKVYIGF  303 (370)
T ss_pred             cCCeeEEeecCCCccEEEEE

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=82.00  E-value=53  Score=32.08  Aligned_cols=116  Identities=21%  Similarity=0.258  Sum_probs=58.8

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcc---eEEEEEecCCCEEEEEeC-------------CCcEEEE
Q psy226          154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN---VTGVAFLPNSDFVLSASR-------------DKTIKMW  217 (406)
Q Consensus       154 l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~---v~~~~~~p~~~~l~s~s~-------------d~~i~iw  217 (406)
                      +...++|.+++..+  ..+..+|+- |+.+.........   =..+...|+|++|+.+..             .-.|...
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred             eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence            66778888886555  678888875 4444333221111   124667789998887761             1124444


Q ss_pred             EcCCCeEEEEee-------------------------cCCcc--EEEEEECC-CCCEEEEEeCCCeEEEEeCCCccceeE
Q psy226          218 EVATGYCVKTLT-------------------------GHREW--VRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAE  269 (406)
Q Consensus       218 d~~~~~~~~~~~-------------------------~~~~~--v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~  269 (406)
                      | .+|+.+....                         ...+|  ++++.+.+ ++.+++|+-.-..|...|.++++..-.
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            5 5555444321                         11122  67888888 556666665566888888777766655


Q ss_pred             EecC
Q psy226          270 LRGH  273 (406)
Q Consensus       270 ~~~~  273 (406)
                      +..+
T Consensus       309 lg~~  312 (477)
T PF05935_consen  309 LGPP  312 (477)
T ss_dssp             ES-S
T ss_pred             eCCC
Confidence            5544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=81.64  E-value=63  Score=32.67  Aligned_cols=159  Identities=16%  Similarity=0.221  Sum_probs=84.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE--Eecc-ccc------CeeeEEECCCCCEEEEEeC-C---CcE
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER--ALHG-HLD------SVQDIAFDQSGKLLVSCSA-D---MSL  172 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~--~~~~-h~~------~V~~l~~~~~g~~l~sgs~-d---~~i  172 (406)
                      .+.|..|.|.+++..+++.-.+|.|.+||...+....  .+.. +..      -|..........++++-+. +   -..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            5679999999999999999999999999994433222  2211 111      1222222122344444443 2   356


Q ss_pred             EEEeC--CCCeEEEEEe---cCCcceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCeEEEEeecC-----C-ccEEEEEE
Q psy226          173 KLWDM--STYQCLKTMQ---GHDHNVTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTLTGH-----R-EWVRQIKV  240 (406)
Q Consensus       173 ~vwd~--~~~~~~~~~~---~h~~~v~~~~~~p-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-----~-~~v~~l~~  240 (406)
                      +++.+  .+.. +..+.   .+........|.- +|.+ .-- .+++|.+|.+...+..+++.-.     . ..+.++.-
T Consensus       209 kL~~l~~~~~~-~~El~s~~~e~~~~~~s~f~Y~~G~L-Y~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~  285 (670)
T PF10395_consen  209 KLISLSNESSS-IFELSSTILENFGLEDSKFCYQFGKL-YQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP  285 (670)
T ss_pred             EEEEeccCCcc-eEEeehheeccCCcccceEEEeCCEE-EEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence            77777  2222 22222   1222222233322 4442 222 6779999999887666655322     1 12323322


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCCccceeE
Q psy226          241 SPDGTLLASCSNDHTARVWSLATKETKAE  269 (406)
Q Consensus       241 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~  269 (406)
                      -...+.+++  .+..|++.|+.-...+.+
T Consensus       286 ~s~nRvLLs--~~nkIyLld~~~~siLse  312 (670)
T PF10395_consen  286 PSPNRVLLS--VNNKIYLLDLKFESILSE  312 (670)
T ss_pred             CCCCeEEEE--cCCEEEEEeehhhhhhhh
Confidence            112334443  467899999865544433

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG2659|consensus

Probab=80.62  E-value=1.8  Score=36.78  Aligned_cols=34  Identities=38%  Similarity=0.714  Sum_probs=31.0

Q ss_pred             hhHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCh
Q psy226            6 RQREELNKAVADYLLSNGYLSALEGFKKDADLPA   39 (406)
Q Consensus         6 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   39 (406)
                      -.++++|.+|.+||...||..+++.|..++.+.+
T Consensus        24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~   57 (228)
T KOG2659|consen   24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKP   57 (228)
T ss_pred             cchhhHHHHHHHHHHhccHHHHHHHhccccCCCC
Confidence            3578999999999999999999999999998755

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	406
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-166
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-49
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-46
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-14
2h9l_A	329	Wdr5delta23 Length = 329		2e-45
2h9l_A	329	Wdr5delta23 Length = 329		1e-14
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-45
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-14
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-45
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-14
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-45
2gnq_A	336	Structure Of Wdr5 Length = 336		9e-15
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-45
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		9e-15
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-45
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-14
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-45
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-14
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-45
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-14
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-45
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-14
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-45
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-14
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-44
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-14
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-44
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-14
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-44
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-14
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-44
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-14
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-43
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-14
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-43
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-14
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-30
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-28
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		8e-15
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-28
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-15
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-27
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-14
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-26
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-16
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-26
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-16
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-26
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-20
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-25
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-14
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		7e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		6e-25
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		6e-25
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-24
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-24
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-24
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-24
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-24
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-15
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-24
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-24
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		2e-24
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		4e-24
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-24
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-21
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-12
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-23
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-16
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-21
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-17
1uuj_A	88	N-Terminal Domain Of Lissencephaly-1 Protein (Lis-1		5e-19
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-18
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		7e-18
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		9e-18
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-11
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-17
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		9e-15
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		7e-04
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-17
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-10
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-17
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-10
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-17
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-10
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-17
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		9e-11
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		4e-17
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		9e-11
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-17
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-17
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-16
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		5e-14
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-13
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-11
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		6e-13
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		7e-12
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		3e-11
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		5e-11
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		6e-11
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-10
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		2e-10
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		7e-07
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		3e-10
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		6e-10
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		1e-07
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		2e-05
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		7e-10
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		1e-07
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		2e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-09
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		9e-09
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		1e-09
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-09
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-08
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-09
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		9e-09
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		3e-09
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-09
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		2e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-09
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-06
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-09
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-08
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-06
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		1e-08
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		4e-08
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		7e-08
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-07
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		4e-07
3mmy_A	368	Structural And Functional Analysis Of The Interacti		7e-07
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		1e-06
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		1e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-06
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		1e-06
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-06
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-06
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-06
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		4e-06
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		1e-05
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		3e-05
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		9e-04
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		4e-05
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		8e-04
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		4e-05
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		8e-04

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  580 bits (1496), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 272/410 (66%), Positives = 320/410 (78%), Gaps = 4/410 (0%)
Query: 1   MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDA--DLPAEVEKKYSGLLEKKWTSVIR 58
           MVLSQRQR+ELN+A+ADYL SNGY  A   FKK+A  D+  E++KKY+GLLEKKWTSVIR
Sbjct: 1   MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIR 60
Query: 59  LQKKVIXXXXXXXXXXXXYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVF 118
           LQKKV+            +  G P   KR P EWIPR PEK+ALSGHRSPV +VIFHPVF
Sbjct: 61  LQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF 120
Query: 119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
           S+M S SEDATI++WDYETG++ER L GH DSVQDI+FD SGKLL SCSADM++KLWD  
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
            ++C++TM GHDHNV+ V+ +PN D ++SASRDKTIKMWEV TGYCVKT TGHREWVR +
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240
Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEA--AX 296
           + + DGTL+ASCSND T RVW +ATKE KAELR H H VEC++WAP  +  SISEA  + 
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300
Query: 297 XXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
                    +L +GSRDKTIK+WDV +G  L TL+GHDNWVRGV FH GGK+++SC DDK
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360
Query: 357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           TLRVWD  NKR MKTL AH HFVTSLDFH+  PYVVTGSVD+TVKVWECR
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  192 bits (488), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 24/303 (7%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
           L+GH S V  V F P    +AS S+D T++LW+   G+  + L GH  SV+ +AF   G+
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 234
Query: 162 LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT 221
            + S S D ++KLW+ +  Q L+T+ GH  +V GVAF P+   + SAS DKT+K+W    
Sbjct: 235 TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RN 292
Query: 222 GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVA 281
           G  ++TLTGH   V  +  SPDG  +AS S+D T ++W+   +  +  L GH  +V  VA
Sbjct: 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGVA 351
Query: 282 WAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT 341
           ++P                      +A+ S DKT+KLW+  +G LL TL GH + VRGV 
Sbjct: 352 FSP------------------DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 392
Query: 342 FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVK 401
           F P G+ + S  DDKT+++W+  N + ++TL  HS  V  + F      + + S DKTVK
Sbjct: 393 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451
Query: 402 VWE 404
           +W 
Sbjct: 452 LWN 454

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  181 bits (459), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 172/331 (51%), Gaps = 26/331 (7%)
Query: 80  GAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE 139
           G+ T++K +P +  P    KF L+GH   V  V F P    +AS S D  I++W    G+
Sbjct: 4   GSATQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 61
Query: 140 YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFL 199
           +E+ + GH   + D+A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F 
Sbjct: 62  FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 121
Query: 200 PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW 259
           P S+ ++S S D+++++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 260 SLATKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKL 318
             A+ +    L   D+  V  V ++P                     Y+   + D T+KL
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKL 223
Query: 319 WDVGSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
           WD   G  L T  GH N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H
Sbjct: 224 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
Query: 376 SHFVTSLDFHRAHPYVVTGSV--DKTVKVWE 404
           +  V S   H     + + ++  DKT+K+W+
Sbjct: 284 TDVVISTACHPTENIIASAALENDKTIKLWK 314

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 21  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 62
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 63  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 122
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 123 QSNLIVSGSFDESVRIWDVK 142

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  179 bits (455), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/334 (32%), Positives = 173/334 (51%), Gaps = 28/334 (8%)
Query: 77  YVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYE 136
           Y +G  T++K +P +  P    KF L+GH   V  V F P    +AS S D  I++W   
Sbjct: 15  YFQG--TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 70
Query: 137 TGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGV 196
            G++E+ + GH   + D+A+     LLVS S D +LK+WD+S+ +CLKT++GH + V   
Sbjct: 71  DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 130
Query: 197 AFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTA 256
            F P S+ ++S S D+++++W+V TG C+KTL  H + V  +  + DG+L+ S S D   
Sbjct: 131 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
Query: 257 RVWSLATKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKT 315
           R+W  A+ +    L   D+  V  V ++P                     Y+   + D T
Sbjct: 191 RIWDTASGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNT 232
Query: 316 IKLWDVGSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTL 372
           +KLWD   G  L T  GH N  +     F   GGK++VS  +D  + +W+   K  ++ L
Sbjct: 233 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 292
Query: 373 EAHSHFVTSLDFHRAHPYVVTGSV--DKTVKVWE 404
           + H+  V S   H     + + ++  DKT+K+W+
Sbjct: 293 QGHTDVVISTACHPTENIIASAALENDKTIKLWK 326

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 33  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 74
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 75  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 134
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 135 QSNLIVSGSFDESVRIWDVK 154

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  179 bits (453), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 26/328 (7%)
Query: 83  TRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER 142
           T++K +P +  P    KF L+GH   V  V F P    +AS S D  I++W    G++E+
Sbjct: 8   TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 65
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
            + GH   + D+A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P S
Sbjct: 66  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 203 DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
           + ++S S D+++++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W  A
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 263 TKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
           + +    L   D+  V  V ++P                     Y+   + D T+KLWD 
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDY 227
Query: 322 GSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
             G  L T  GH N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+  
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Query: 379 VTSLDFHRAHPYVVTGSV--DKTVKVWE 404
           V S   H     + + ++  DKT+K+W+
Sbjct: 288 VISTACHPTENIIASAALENDKTIKLWK 315

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 22  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 63
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 124 QSNLIVSGSFDESVRIWDVK 143

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  179 bits (453), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 171/330 (51%), Gaps = 26/330 (7%)
Query: 81  APTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY 140
           + T++K +P +  P    KF L+GH   V  V F P    +AS S D  I++W    G++
Sbjct: 6   SATQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
           E+ + GH   + D+A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 201 NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
            S+ ++S S D+++++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W 
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 261 LATKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLW 319
            A+ +    L   D+  V  V ++P                     Y+   + D T+KLW
Sbjct: 184 TASGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLW 225
Query: 320 DVGSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
           D   G  L T  GH N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+
Sbjct: 226 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT 285
Query: 377 HFVTSLDFHRAHPYVVTGSV--DKTVKVWE 404
             V S   H     + + ++  DKT+K+W+
Sbjct: 286 DVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 22  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 63
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 124 QSNLIVSGSFDESVRIWDVK 143

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  179 bits (453), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 26/328 (7%)
Query: 83  TRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER 142
           T++K +P +  P    KF L+GH   V  V F P    +AS S D  I++W    G++E+
Sbjct: 26  TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 83
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
            + GH   + D+A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P S
Sbjct: 84  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 143
Query: 203 DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
           + ++S S D+++++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W  A
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Query: 263 TKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
           + +    L   D+  V  V ++P                     Y+   + D T+KLWD 
Sbjct: 204 SGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDY 245
Query: 322 GSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
             G  L T  GH N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+  
Sbjct: 246 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 305
Query: 379 VTSLDFHRAHPYVVTGSV--DKTVKVWE 404
           V S   H     + + ++  DKT+K+W+
Sbjct: 306 VISTACHPTENIIASAALENDKTIKLWK 333

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 40  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 81
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 82  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 141
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 142 QSNLIVSGSFDESVRIWDVK 161

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  179 bits (453), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 26/328 (7%)
Query: 83  TRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER 142
           T++K +P +  P    KF L+GH   V  V F P    +AS S D  I++W    G++E+
Sbjct: 24  TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 81
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
            + GH   + D+A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P S
Sbjct: 82  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 141
Query: 203 DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
           + ++S S D+++++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W  A
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Query: 263 TKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
           + +    L   D+  V  V ++P                     Y+   + D T+KLWD 
Sbjct: 202 SGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDY 243
Query: 322 GSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
             G  L T  GH N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+  
Sbjct: 244 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 303
Query: 379 VTSLDFHRAHPYVVTGSV--DKTVKVWE 404
           V S   H     + + ++  DKT+K+W+
Sbjct: 304 VISTACHPTENIIASAALENDKTIKLWK 331

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 38  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 79
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 80  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 139
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 140 QSNLIVSGSFDESVRIWDVK 159

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  179 bits (453), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 169/331 (51%), Gaps = 25/331 (7%)
Query: 80  GAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE 139
           G+P   +  PT   P    KF L+GH   V  V F P    +AS S D  I++W    G+
Sbjct: 4   GSP-EFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 62
Query: 140 YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFL 199
           +E+ + GH   + D+A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F 
Sbjct: 63  FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 200 PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW 259
           P S+ ++S S D+++++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 260 SLATKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKL 318
             A+ +    L   D+  V  V ++P                     Y+   + D T+KL
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKL 224
Query: 319 WDVGSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
           WD   G  L T  GH N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 376 SHFVTSLDFHRAHPYVVTGSV--DKTVKVWE 404
           +  V S   H     + + ++  DKT+K+W+
Sbjct: 285 TDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 22  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 63
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 124 QSNLIVSGSFDESVRIWDVK 143

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  178 bits (452), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 26/328 (7%)
Query: 83  TRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER 142
           T++K +P +  P    KF L+GH   V  V F P    +AS S D  I++W    G++E+
Sbjct: 3   TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 60
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
            + GH   + D+A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P S
Sbjct: 61  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 120
Query: 203 DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
           + ++S S D+++++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W  A
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 263 TKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
           + +    L   D+  V  V ++P                     Y+   + D T+KLWD 
Sbjct: 181 SGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDY 222
Query: 322 GSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
             G  L T  GH N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+  
Sbjct: 223 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 282
Query: 379 VTSLDFHRAHPYVVTGSV--DKTVKVWE 404
           V S   H     + + ++  DKT+K+W+
Sbjct: 283 VISTACHPTENIIASAALENDKTIKLWK 310

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 17  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 58
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 59  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 118
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 119 QSNLIVSGSFDESVRIWDVK 138

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  178 bits (452), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 26/328 (7%)
Query: 83  TRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER 142
           T++K +P +  P    KF L+GH   V  V F P    +AS S D  I++W    G++E+
Sbjct: 2   TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 59
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
            + GH   + D+A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P S
Sbjct: 60  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 119
Query: 203 DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
           + ++S S D+++++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W  A
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 263 TKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
           + +    L   D+  V  V ++P                     Y+   + D T+KLWD 
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDY 221
Query: 322 GSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
             G  L T  GH N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+  
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 379 VTSLDFHRAHPYVVTGSV--DKTVKVWE 404
           V S   H     + + ++  DKT+K+W+
Sbjct: 282 VISTACHPTENIIASAALENDKTIKLWK 309

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 16  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 57
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 58  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 118 QSNLIVSGSFDESVRIWDVK 137

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  178 bits (452), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 170/328 (51%), Gaps = 26/328 (7%)
Query: 83  TRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER 142
           T++K +P +  P    KF L+GH   V  V F P    +AS S D  I++W    G++E+
Sbjct: 2   TQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 59
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
            + GH   + D+A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P S
Sbjct: 60  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 119
Query: 203 DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA 262
           + ++S S D+++++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W  A
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 263 TKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
           + +    L   D+  V  V ++P                     Y+   + D T+KLWD 
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDY 221
Query: 322 GSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
             G  L T  GH N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+  
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Query: 379 VTSLDFHRAHPYVVTGSV--DKTVKVWE 404
           V S   H     + + ++  DKT+K+W+
Sbjct: 282 VISTACHPTENIIASAALENDKTIKLWK 309

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 16  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 57
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 58  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 118 QSNLIVSGSFDESVRIWDVK 137

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  178 bits (451), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 165/322 (51%), Gaps = 24/322 (7%)
Query: 89  PTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHL 148
           PT   P    KF L+GH   V  V F P    +AS S D  I++W    G++E+ + GH 
Sbjct: 2   PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 61
Query: 149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSA 208
             + D+A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P S+ ++S 
Sbjct: 62  LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 121
Query: 209 SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKA 268
           S D+++++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W  A+ +   
Sbjct: 122 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 181
Query: 269 ELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLL 327
            L   D+  V  V ++P                     Y+   + D T+KLWD   G  L
Sbjct: 182 TLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDYSKGKCL 223
Query: 328 FTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF 384
            T  GH N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+  V S   
Sbjct: 224 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTAC 283
Query: 385 HRAHPYVVTGSV--DKTVKVWE 404
           H     + + ++  DKT+K+W+
Sbjct: 284 HPTENIIASAALENDKTIKLWK 305

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 12  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 53
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 54  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 113
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 114 QSNLIVSGSFDESVRIWDVK 133

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  177 bits (448), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 170/330 (51%), Gaps = 26/330 (7%)
Query: 81  APTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY 140
           + T++K +P +  P     F L+GH   V  V F P    +AS S D  I++W    G++
Sbjct: 3   SATQSKPTPVK--PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
           E+ + GH   + D+A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 201 NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
            S+ ++S S D+++++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W 
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 261 LATKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLW 319
            A+ +    L   D+  V  V ++P                     Y+   + D T+KLW
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNTLKLW 222
Query: 320 DVGSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
           D   G  L T  GH N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 377 HFVTSLDFHRAHPYVVTGSV--DKTVKVWE 404
             V S   H     + + ++  DKT+K+W+
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 61/101 (60%)
Query: 306 YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN 365
           +LA+ S DK IK+W    G    T+ GH   +  V +      LVS  DDKTL++WD ++
Sbjct: 40  WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 366 KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
            + +KTL+ HS++V   +F+     +V+GS D++V++W+ +
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  176 bits (445), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 163/317 (51%), Gaps = 24/317 (7%)
Query: 94  PRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQD 153
           P    KF L+GH   V  V F P    +AS S D  I++W    G++E+ + GH   + D
Sbjct: 10  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 69
Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT 213
           +A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P S+ ++S S D++
Sbjct: 70  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 214 IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH 273
           +++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W  A+ +    L   
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 189
Query: 274 DH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIG 332
           D+  V  V ++P                     Y+   + D T+KLWD   G  L T  G
Sbjct: 190 DNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDYSKGKCLKTYTG 231
Query: 333 HDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP 389
           H N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+  V S   H    
Sbjct: 232 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 291
Query: 390 YVVTGSV--DKTVKVWE 404
            + + ++  DKT+K+W+
Sbjct: 292 IIASAALENDKTIKLWK 308

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 15  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 56
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 57  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 116
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 117 QSNLIVSGSFDESVRIWDVK 136

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  175 bits (443), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 163/317 (51%), Gaps = 24/317 (7%)
Query: 94  PRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQD 153
           P    KF L+GH   V  V F P    +A+ S D  I++W    G++E+ + GH   + D
Sbjct: 14  PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT 213
           +A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P S+ ++S S D++
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 214 IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH 273
           +++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W  A+ +    L   
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 274 DH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIG 332
           D+  V  V ++P                     Y+   + D T+KLWD   G  L T  G
Sbjct: 194 DNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 333 HDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP 389
           H N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+  V S   H    
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 390 YVVTGSV--DKTVKVWE 404
            + + ++  DKT+K+W+
Sbjct: 296 IIASAALENDKTIKLWK 312

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA  S DK IK+W    G  
Sbjct: 19  KFTLAGHTKAVSSVKFSPN------------------GEWLAASSADKLIKIWGAYDGKF 60
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 121 QSNLIVSGSFDESVRIWDVK 140

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  175 bits (443), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 169/330 (51%), Gaps = 26/330 (7%)
Query: 81  APTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY 140
           + T++K +P +  P     F L+GH   V  V F P    +AS S D  I++W    G++
Sbjct: 3   SATQSKPTPVK--PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
           E+ + GH   + D+A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 201 NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
            S+ ++S S D+++++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W 
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 261 LATKETKAELRGHDH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLW 319
            A+ +    L   D+  V  V ++P                     Y+   + D  +KLW
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPN------------------GKYILAATLDNDLKLW 222
Query: 320 DVGSGSLLFTLIGHDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
           D   G  L T  GH N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+
Sbjct: 223 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHT 282
Query: 377 HFVTSLDFHRAHPYVVTGSV--DKTVKVWE 404
             V S   H     + + ++  DKT+K+W+
Sbjct: 283 DVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 61/101 (60%)
Query: 306 YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN 365
           +LA+ S DK IK+W    G    T+ GH   +  V +      LVS  DDKTL++WD ++
Sbjct: 40  WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 366 KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
            + +KTL+ HS++V   +F+     +V+GS D++V++W+ +
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 163/317 (51%), Gaps = 24/317 (7%)
Query: 94  PRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQD 153
           P    KF L+GH   V  V F P    +AS S D  I++W    G++E+ + GH   + D
Sbjct: 14  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT 213
           +A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P S+ ++S S D++
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 214 IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH 273
           +++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W  A+ +    L   
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 274 DH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIG 332
           D+  V  V ++P                     Y+   + D T+KLWD   G  L T  G
Sbjct: 194 DNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 333 HDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP 389
           H N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+  V S   H    
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 390 YVVTGSV--DKTVKVWE 404
            + + ++  DKT+K+++
Sbjct: 296 IIASAALENDKTIKLYK 312

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 19  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 60
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 121 QSNLIVSGSFDESVRIWDVK 140

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 163/317 (51%), Gaps = 24/317 (7%)
Query: 94  PRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQD 153
           P    KF L+GH   V  V F P    +AS S D  I++W    G++E+ + GH   + D
Sbjct: 14  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 73
Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT 213
           +A+     LLVS S D +LK+WD+S+ +CLKT++GH + V    F P S+ ++S S D++
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 214 IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH 273
           +++W+V TG C+KTL  H + V  +  + DG+L+ S S D   R+W  A+ +    L   
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 274 DH-TVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIG 332
           D+  V  V ++P                     Y+   + D T+KLWD   G  L T  G
Sbjct: 194 DNPPVSFVKFSPN------------------GKYILAATLDNTLKLWDYSKGKCLKTYTG 235
Query: 333 HDN--WVRGVTFH-PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP 389
           H N  +     F   GGK++VS  +D  + +W+   K  ++ L+ H+  V S   H    
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 390 YVVTGSV--DKTVKVWE 404
            + + ++  DKT+K+++
Sbjct: 296 IIASAALENDKTIKLFK 312

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
           K  L GH   V  V ++P                     +LA+ S DK IK+W    G  
Sbjct: 19  KFTLAGHTKAVSSVKFSPN------------------GEWLASSSADKLIKIWGAYDGKF 60
Query: 327 LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             T+ GH   +  V +      LVS  DDKTL++WD ++ + +KTL+ HS++V   +F+ 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 387 AHPYVVTGSVDKTVKVWECR 406
               +V+GS D++V++W+ +
Sbjct: 121 QSNLIVSGSFDESVRIWDVK 140

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  128 bits (322), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 164/334 (49%), Gaps = 39/334 (11%)
Query: 79  EGAPTRAKRSPTEWIP---RAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDY 135
           + A  R  R  T W     ++P+   L GH   VI  +     + + S S+D T+++W  
Sbjct: 90  KSAYIRQHRIDTNWRRGELKSPK--VLKGHDDHVITCL-QFCGNRIVSGSDDNTLKVWSA 146
Query: 136 ETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTG 195
            TG+  R L GH   V   +      +++S S D +LK+W+  T +C+ T+ GH   V  
Sbjct: 147 VTGKCLRTLVGHTGGVW--SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRC 204
Query: 196 VAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHT 255
           +    +   V+S SRD T+++W++ TG C+  L GH   VR ++   DG  + S + D  
Sbjct: 205 MHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260
Query: 256 ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKT 315
            +VW   T+     L+GH + V  + +  G+                   ++ +GS D +
Sbjct: 261 VKVWDPETETCLHTLQGHTNRVYSLQF-DGI-------------------HVVSGSLDTS 300
Query: 316 IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA- 374
           I++WDV +G+ + TL GH +   G+        LVS   D T+++WD    + ++TL+  
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGP 358
Query: 375 --HSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
             H   VT L F++   +V+T S D TVK+W+ +
Sbjct: 359 NKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLK 390

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 144/322 (44%), Gaps = 40/322 (12%)
Query: 102 LSGHRSPVIKVIFHPVF-SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIA 155
           L GH   V ++   P F  ++ S S D TI +W     +   G  +RAL GH   V D+ 
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 156 FDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIK 215
               G+  +S S D +L+LWD++T    +   GH  +V  VAF  ++  ++S SRDKTIK
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 216 MWEVATGYCVKTLT--GHREWVRQIKVSPDGT--LLASCSNDHTARVWSLATKETKAELR 271
           +W    G C  T+    H EWV  ++ SP+ +  ++ SC  D   +VW+LA  + K    
Sbjct: 131 LWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 272 GHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLI 331
           GH   +  V  +P                       A+G +D    LWD+  G  L+TL 
Sbjct: 190 GHTGYLNTVTVSP------------------DGSLCASGGKDGQAMLWDLNEGKHLYTLD 231
Query: 332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL---------EAHSHFVTSL 382
           G D  +  + F P  +Y +      ++++WD   K  +  L         +A     TSL
Sbjct: 232 GGDI-INALCFSP-NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 289
Query: 383 DFHRAHPYVVTGSVDKTVKVWE 404
            +      +  G  D  V+VW+
Sbjct: 290 AWSADGQTLFAGYTDNLVRVWQ 311

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 29/188 (15%)
Query: 227 TLTGHREWVRQIKVSPD-GTLLASCSNDHTARVWSLATKET-----KAELRGHDHTVECV 280
           TL GH  WV QI  +P    ++ S S D T  +W L   ET     +  LRGH H V  V
Sbjct: 10  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 281 AWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGV 340
                ++S+                +  +GS D T++LWD+ +G+     +GH   V  V
Sbjct: 70  V----ISSDG--------------QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV 111
Query: 341 TFHPGGKYLVSCGDDKTLRVWDTAN--KRNMKTLEAHSHFVTSLDF--HRAHPYVVTGSV 396
            F    + +VS   DKT+++W+T    K  ++  E+HS +V+ + F  + ++P +V+   
Sbjct: 112 AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGW 170
Query: 397 DKTVKVWE 404
           DK VKVW 
Sbjct: 171 DKLVKVWN 178

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 144/322 (44%), Gaps = 40/322 (12%)
Query: 102 LSGHRSPVIKVIFHPVF-SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIA 155
           L GH   V ++   P F  ++ S S D TI +W     +   G  +RAL GH   V D+ 
Sbjct: 34  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 156 FDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIK 215
               G+  +S S D +L+LWD++T    +   GH  +V  VAF  ++  ++S SRDKTIK
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 216 MWEVATGYCVKTLT--GHREWVRQIKVSPDGT--LLASCSNDHTARVWSLATKETKAELR 271
           +W    G C  T+    H EWV  ++ SP+ +  ++ SC  D   +VW+LA  + K    
Sbjct: 154 LWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 212
Query: 272 GHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLI 331
           GH   +  V  +P                       A+G +D    LWD+  G  L+TL 
Sbjct: 213 GHTGYLNTVTVSP------------------DGSLCASGGKDGQAMLWDLNEGKHLYTLD 254
Query: 332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL---------EAHSHFVTSL 382
           G D  +  + F P  +Y +      ++++WD   K  +  L         +A     TSL
Sbjct: 255 GGDI-INALCFSP-NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL 312
Query: 383 DFHRAHPYVVTGSVDKTVKVWE 404
            +      +  G  D  V+VW+
Sbjct: 313 AWSADGQTLFAGYTDNLVRVWQ 334

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 29/188 (15%)
Query: 227 TLTGHREWVRQIKVSPD-GTLLASCSNDHTARVWSLATKET-----KAELRGHDHTVECV 280
           TL GH  WV QI  +P    ++ S S D T  +W L   ET     +  LRGH H V  V
Sbjct: 33  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 281 AWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGV 340
                ++S+                +  +GS D T++LWD+ +G+     +GH   V  V
Sbjct: 93  V----ISSDG--------------QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV 134
Query: 341 TFHPGGKYLVSCGDDKTLRVWDTAN--KRNMKTLEAHSHFVTSLDF--HRAHPYVVTGSV 396
            F    + +VS   DKT+++W+T    K  ++  E+HS +V+ + F  + ++P +V+   
Sbjct: 135 AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGW 193
Query: 397 DKTVKVWE 404
           DK VKVW 
Sbjct: 194 DKLVKVWN 201

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 146/296 (49%), Gaps = 42/296 (14%)
Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY 180
           + S   D TI++WD  T E +R L GH  SV  + +D+  +++++ S+D ++++WD++T 
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTG 203
Query: 181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV---KTLTGHREWVRQ 237
           + L T+  H   V  + F  N+  +++ S+D++I +W++A+   +   + L GHR  V  
Sbjct: 204 EMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261
Query: 238 IKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXX 297
           +    D   + S S D T +VW+ +T E    L GH   + C+ +   +           
Sbjct: 262 VDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL----------- 308
Query: 298 XXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT 357
                    + +GS D TI+LWD+  G+ L  L GH+  VR + F    K +VS   D  
Sbjct: 309 ---------VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK 357
Query: 358 LRVWD---------TANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
           ++VWD          A    ++TL  HS  V  L F      +V+ S D T+ +W+
Sbjct: 358 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 411

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 27/165 (16%)
Query: 243 DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXX 302
           D   + S   D+T ++W   T E K  L GH  +V C+ +   V                
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV---------------- 185
Query: 303 XXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
               + TGS D T+++WDV +G +L TLI H   V  + F+ G   +V+C  D+++ VWD
Sbjct: 186 ----IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWD 239
Query: 363 TANKRNM---KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
            A+  ++   + L  H   V  +DF     Y+V+ S D+T+KVW 
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWN 282

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score =  115 bits (288), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 137/320 (42%), Gaps = 43/320 (13%)
Query: 87  RSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSL----MASCSEDATIRLWDYETGEYER 142
           R   EWI +   K        P    ++H  FS     +ASC  D T++++  ETGE   
Sbjct: 592 RLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL 651
Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS 202
            +  H D V   AF      + +CSAD  +K+WD +T + + T   H   V    F   S
Sbjct: 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKS 711
Query: 203 DFVLSA--SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
           + +L A  S D  +K+W++    C  T+ GH   V   + SPD  LLASCS D T R+W 
Sbjct: 712 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Query: 261 LATKETKAELRGH-------------DHTVECVAWAP---------------------GV 286
           + +   +  +                +  V+C +W+                      G+
Sbjct: 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL 831
Query: 287 ASE--SISEAAXXXXXXXXXXYLATGSRDK-TIKLWDVGSGSLLFTLIGHDNWVRGVTFH 343
            +E  +   +           +LA  +  +  ++LW++ S   +    GH +WV GV F 
Sbjct: 832 LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS 891
Query: 344 PGGKYLVSCGDDKTLRVWDT 363
           P G   ++  DD+T+RVW+T
Sbjct: 892 PDGSSFLTASDDQTIRVWET 911

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 16/195 (8%)
Query: 189 HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLA 248
           H   V    F  +   + S   DKT+++++  TG  +  +  H + V     S D + +A
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 249 SCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLA 308
           +CS D   ++W  AT +       H   V C  +                        LA
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT----------------NKSNHLLLA 717
Query: 309 TGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN 368
           TGS D  +KLWD+       T+ GH N V    F P  + L SC  D TLR+WD  +   
Sbjct: 718 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777
Query: 369 MKTLEAHSHFVTSLD 383
            K++     F++S D
Sbjct: 778 RKSINVKRFFLSSED 792

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 136/316 (43%), Gaps = 43/316 (13%)
Query: 91  EWIPRAPEKFALSGHRSPVIKVIFHPVFSL----MASCSEDATIRLWDYETGEYERALHG 146
           EWI +   K        P    ++H  FS     +ASC  D T++++  ETGE    +  
Sbjct: 603 EWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA 662
Query: 147 HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVL 206
           H D V   AF      + +CSAD  +K+WD +T + + T   H   V    F   S+ +L
Sbjct: 663 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 722
Query: 207 SA--SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK 264
            A  S D  +K+W++    C  T+ GH   V   + SPD  LLASCS D T R+W + + 
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Query: 265 ETKAELRGH-------------DHTVECVAWAP---------------------GVASE- 289
             +  +                +  V+C +W+                      G+ +E 
Sbjct: 783 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEI 842
Query: 290 -SISEAAXXXXXXXXXXYLATGSRDK-TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
            +   +           +LA  +  +  ++LW++ S   +    GH +WV GV F P G 
Sbjct: 843 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 902
Query: 348 YLVSCGDDKTLRVWDT 363
             ++  DD+T+RVW+T
Sbjct: 903 SFLTASDDQTIRVWET 918

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 16/195 (8%)
Query: 189 HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLA 248
           H   V    F  +   + S   DKT+++++  TG  +  +  H + V     S D + +A
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 249 SCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLA 308
           +CS D   ++W  AT +       H   V C  +                        LA
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT----------------NKSNHLLLA 724
Query: 309 TGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN 368
           TGS D  +KLWD+       T+ GH N V    F P  + L SC  D TLR+WD  +   
Sbjct: 725 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784
Query: 369 MKTLEAHSHFVTSLD 383
            K++     F++S D
Sbjct: 785 RKSINVKRFFLSSED 799

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score =  115 bits (287), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 147/315 (46%), Gaps = 53/315 (16%)
Query: 120 LMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKL 174
           ++ S S D +I LW     D   G  +R L GH   V+D+     G+  +S S D  L+L
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 175 WDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT----G 230
           WD++     +   GH  +V  VAF  ++  ++SASRD+TIK+W    G C  T++    G
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEG 515
Query: 231 HREWVRQIKVSPDGTL---LASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
           HR+WV  ++ SP+ TL   + S S D T +VW+L+  + ++ L GH   V  VA +P   
Sbjct: 516 HRDWVSCVRFSPN-TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP--- 571
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
                               A+G +D  + LWD+  G  L++L  + + +  + F P  +
Sbjct: 572 ---------------DGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSP-NR 614
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTL------EAHSH-------------FVTSLDFHRAH 388
           Y +    +  +++WD  +K  ++ L      EA                + TSL++    
Sbjct: 615 YWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG 674
Query: 389 PYVVTGSVDKTVKVW 403
             + +G  D  ++VW
Sbjct: 675 STLFSGYTDGVIRVW 689

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 110/232 (47%), Gaps = 31/232 (13%)
Query: 185 TMQGHDHNVTGVAF-LPNSDFVLSASRDKTIKMWEV-----ATGYCVKTLTGHREWVRQI 238
           TM+ H   VT +A  + N+D ++SASRDK+I +W++     A G   + LTGH  +V  +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
            +S DG    S S D   R+W LA   +     GH   V  VA++               
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS--------------- 481
Query: 299 XXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLI----GHDNWVRGVTFHPG--GKYLVSC 352
                   + + SRD+TIKLW+   G   +T+     GH +WV  V F P      +VS 
Sbjct: 482 ---LDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537
Query: 353 GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
             DKT++VW+ +N +   TL  H+ +V+++          +G  D  V +W+
Sbjct: 538 SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD 589

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 127/277 (45%), Gaps = 23/277 (8%)
Query: 104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE--RALHGHLDSVQDIAFDQSGK 161
           GH+  V KV + P  + +AS S DAT  +W     ++E    L GH + V+ +A+  SG 
Sbjct: 59  GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 162 LLVSCSADMSLKLWDM---STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW- 217
           LL +CS D S+ +W++     Y+C+  +  H  +V  V + P+ + + SAS D T+K++ 
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 218 -EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS--LATKETKAELRGHD 274
            E     C  TL GH   V  +   P G  LASCS+D T R+W   L   E      G D
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD 238
Query: 275 HTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGS----LLFTL 330
            + +C+    G  S +I + A           LAT   D  I+++     S      F+L
Sbjct: 239 PSWKCICTLSGFHSRTIYDIAWCQLTGA----LATACGDDAIRVFQEDPNSDPQQPTFSL 294
Query: 331 I-----GHDNWVRGVTFHPGGK-YLVSCGDDKTLRVW 361
                  H   V  V ++P     L SC DD  +  W
Sbjct: 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 28/218 (12%)
Query: 196 VAFLPNSDFVLSASRDKTIKMW--EVATGYCVKTLT-GHREWVRQIKVSPDGTLLASCSN 252
           +A+ P    + S   D+ I++W  E  +  C   L+ GH+  VR++  SP G  LAS S 
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 253 DHTARVWSLATK--ETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATG 310
           D T  +W       E    L GH++ V+ VAWAP                      LAT 
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS------------------GNLLATC 123
Query: 311 SRDKTIKLWDVGSGS---LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVW--DTAN 365
           SRDK++ +W+V        +  L  H   V+ V +HP  + L S   D T++++  +  +
Sbjct: 124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD 183
Query: 366 KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
                TLE H   V SL F  +   + + S D+TV++W
Sbjct: 184 WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 307 LATGSRDKTIKLWDVGSGSLLFTLI---GHDNWVRGVTFHPGGKYLVSCGDDKTLRVW-- 361
           LA+   D+ I++W     S +   +   GH   VR V + P G YL S   D T  +W  
Sbjct: 31  LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90
Query: 362 DTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
           +  +   + TLE H + V S+ +  +   + T S DK+V VWE
Sbjct: 91  NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score =  111 bits (278), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 127/270 (47%), Gaps = 21/270 (7%)
Query: 139 EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAF 198
           + ++      D V+ I F  +   +++      ++LW+  T   ++++Q  +  V    F
Sbjct: 4   DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 199 LPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV 258
           +   ++++  S D  I+++   TG  V     H +++R I V P    + S S+D T ++
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 259 WSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIK 317
           W+       +    GH+H V CVA+ P   S                   A+G  D+T+K
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPST-----------------FASGCLDRTVK 166
Query: 318 LWDVGSGSLLFTLI-GHDNWVRGVTFHP--GGKYLVSCGDDKTLRVWDTANKRNMKTLEA 374
           +W +G  +  FTL  G +  V  V ++P     Y+++  DD T+++WD   K  + TLE 
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 375 HSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
           H   V+   FH   P +++GS D T+K+W 
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score =  111 bits (278), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 127/270 (47%), Gaps = 21/270 (7%)
Query: 139 EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAF 198
           + ++      D V+ I F  +   +++      ++LW+  T   ++++Q  +  V    F
Sbjct: 4   DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 199 LPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV 258
           +   ++++  S D  I+++   TG  V     H +++R I V P    + S S+D T ++
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 259 WSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIK 317
           W+       +    GH+H V CVA+ P   S                   A+G  D+T+K
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPST-----------------FASGCLDRTVK 166
Query: 318 LWDVGSGSLLFTLI-GHDNWVRGVTFHP--GGKYLVSCGDDKTLRVWDTANKRNMKTLEA 374
           +W +G  +  FTL  G +  V  V ++P     Y+++  DD T+++WD   K  + TLE 
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Query: 375 HSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
           H   V+   FH   P +++GS D T+K+W 
Sbjct: 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 126/268 (47%), Gaps = 21/268 (7%)
Query: 141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP 200
           ++      D V+ I F  +   +++      ++LW+  T   ++++Q  +  V    F+ 
Sbjct: 6   KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 201 NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
             ++++  S D  I+++   TG  V     H +++R I V P    + S S+D T ++W+
Sbjct: 66  RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 261 LATK-ETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLW 319
                  +    GH+H V CVA+ P   S                   A+G  D+T+K+W
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPST-----------------FASGCLDRTVKVW 168
Query: 320 DVGSGSLLFTLI-GHDNWVRGVTFHP--GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
            +G  +  FTL  G +  V  V ++P     Y+++  DD T+++WD   K  + TLE H 
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228
Query: 377 HFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
             V+   FH   P +++GS D T+K+W 
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 42/307 (13%)
Query: 119 SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK 173
           +L+ S S D T+  W     D + G   R+  GH   VQD      G   +S S D +L+
Sbjct: 31  NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
           LWD++T +  +   GH  +V  V     +  ++S SRDKTIK+W +  G C+ TL GH +
Sbjct: 91  LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND 149
Query: 234 WVRQIKVSP------DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
           WV Q++V P      D   + S  ND   + W+L   + +A+  GH+  +  +  +P   
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--- 206
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
                              +A+  +D  I LW++ +   ++TL   D  V  + F P  +
Sbjct: 207 ---------------DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSP-NR 249
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLE---------AHSHFVTSLDFHRAHPYVVTGSVDK 398
           Y ++      ++V+    +  +  L          A  H V SL +      +  G  D 
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDN 308
Query: 399 TVKVWEC 405
            ++VW+ 
Sbjct: 309 VIRVWQV 315

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 42/307 (13%)
Query: 119 SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK 173
           +L+ S S D T+  W     D + G   R+  GH   VQD      G   +S S D +L+
Sbjct: 31  NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
           LWD++T +  +   GH  +V  V     +  ++S SRDKTIK+W +  G C+ TL GH +
Sbjct: 91  LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND 149
Query: 234 WVRQIKVSP------DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
           WV Q++V P      D   + S  ND   + W+L   + +A+  GH+  +  +  +P   
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--- 206
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
                              +A+  +D  I LW++ +   ++TL   D  V  + F P  +
Sbjct: 207 ---------------DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSP-NR 249
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLE---------AHSHFVTSLDFHRAHPYVVTGSVDK 398
           Y ++      ++V+    +  +  L          A  H V SL +      +  G  D 
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDN 308
Query: 399 TVKVWEC 405
            ++VW+ 
Sbjct: 309 VIRVWQV 315

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 42/307 (13%)
Query: 119 SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK 173
           +L+ S S D T+  W     D + G   R+  GH   VQD      G   +S S D +L+
Sbjct: 31  NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
           LWD++T +  +   GH  +V  V     +  ++S SRDKTIK+W +  G C+ TL GH +
Sbjct: 91  LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND 149
Query: 234 WVRQIKVSP------DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
           WV Q++V P      D   + S  ND   + W+L   + +A+  GH+  +  +  +P   
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--- 206
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
                              +A+  +D  I LW++ +   ++TL   D  V  + F P  +
Sbjct: 207 ---------------DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSP-NR 249
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLE---------AHSHFVTSLDFHRAHPYVVTGSVDK 398
           Y ++      ++V+    +  +  L          A  H V SL +      +  G  D 
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAV-SLAWSADGQTLFAGYTDN 308
Query: 399 TVKVWEC 405
            ++VW+ 
Sbjct: 309 VIRVWQV 315

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 134/306 (43%), Gaps = 42/306 (13%)
Query: 119 SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK 173
           +L+ S S D T+  W     D + G   R+  GH   VQD      G   +S S D +L+
Sbjct: 31  NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
           LWD++T +  +   GH  +V  V     +  ++S SRDKTIK+W +  G C+ TL GH +
Sbjct: 91  LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND 149
Query: 234 WVRQIKVSP------DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
           WV Q++V P      D   + S  ND   + W+L   + +A+  GH+  +  +  +P   
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--- 206
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
                              +A+  +D  I LW++ +   ++TL   D  V  + F P  +
Sbjct: 207 ---------------DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSP-NR 249
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLE---------AHSHFVTSLDFHRAHPYVVTGSVDK 398
           Y ++      ++V+    +  +  L          A  H V SL +      +  G  D 
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDN 308
Query: 399 TVKVWE 404
            ++VW+
Sbjct: 309 VIRVWQ 314

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 42/307 (13%)
Query: 119 SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK 173
           +L+ S S D T+  W     D + G   R+  GH   VQD      G   +S S D +L+
Sbjct: 25  NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 84
Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
           LWD++T +  +   GH  +V  V     +  ++S SRDKTIK+W +  G C+ TL GH +
Sbjct: 85  LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND 143
Query: 234 WVRQIKVSP------DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
           WV Q++V P      D   + S  ND   + W+L   + +A+  GH+  +  +  +P   
Sbjct: 144 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--- 200
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
                              +A+  +D  I LW++ +   ++TL   D  V  + F P  +
Sbjct: 201 ---------------DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSP-NR 243
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLE---------AHSHFVTSLDFHRAHPYVVTGSVDK 398
           Y ++      ++V+    +  +  L          A  H V SL +      +  G  D 
Sbjct: 244 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDN 302
Query: 399 TVKVWEC 405
            ++VW+ 
Sbjct: 303 VIRVWQV 309

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score =  110 bits (274), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 124/259 (47%), Gaps = 21/259 (8%)
Query: 149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSA 208
           D V+ I F  +   +++      +++W+  T   ++++Q  +  V    F+   ++++  
Sbjct: 14  DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG 73
Query: 209 SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK-ETK 267
           S D  I+++   TG  V     H +++R I V P    + S S+D T ++W+       +
Sbjct: 74  SDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE 133
Query: 268 AELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLL 327
               GH+H V CVA+ P   S                   A+G  D+T+K+W +G  +  
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPST-----------------FASGCLDRTVKVWSLGQSTPN 176
Query: 328 FTLI-GHDNWVRGVTFHP--GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF 384
           FTL  G +  V  V ++P     Y+++  DD T+++WD   K  + TLE H   V+   F
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236
Query: 385 HRAHPYVVTGSVDKTVKVW 403
           H   P +++GS D T+K+W
Sbjct: 237 HPTLPIIISGSEDGTLKIW 255

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 133/307 (43%), Gaps = 42/307 (13%)
Query: 119 SLMASCSEDATIRLW-----DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK 173
           +L+ S S D T+  W     D + G   R+  GH   VQD      G   +S S D +L+
Sbjct: 31  NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90
Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
           LWD++T +  +   GH  +V  V     +  ++S SRDKTIK+W +  G C+ TL GH +
Sbjct: 91  LWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATLLGHND 149
Query: 234 WVRQIKVSP------DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVA 287
           WV Q++V P      D   + S  ND   + W+L   + +A+  GH+  +  +  +P   
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASP--- 206
Query: 288 SESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
                              +A+  +D  I LW++ +    +TL   D  V  + F P  +
Sbjct: 207 ---------------DGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE-VFSLAFSP-NR 249
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLE---------AHSHFVTSLDFHRAHPYVVTGSVDK 398
           Y ++      ++V+    +  +  L          A  H V SL +      +  G  D 
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV-SLAWSADGQTLFAGYTDN 308
Query: 399 TVKVWEC 405
            ++VW+ 
Sbjct: 309 VIRVWQV 315

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 130/284 (45%), Gaps = 24/284 (8%)
Query: 95  RAPEKFALSGHRSP---VIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSV 151
           + PE    S   S    +  V F P    +A+ +ED  IR+WD E  +    L GH   +
Sbjct: 109 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 168
Query: 152 QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP-NSDFVLSASR 210
             + +  SG  LVS S D ++++WD+ T QC  T+   D  VT VA  P +  ++ + S 
Sbjct: 169 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSL 227
Query: 211 DKTIKMWEVATGYCVKTL-------TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT 263
           D+ +++W+  TG+ V+ L       TGH++ V  +  + DG  + S S D + ++W+L  
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 264 KETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGS 323
              K++ +   ++  C     G     +S A           Y+ +GS+D+ +  WD  S
Sbjct: 288 ANNKSDSK-TPNSGTCEVTYIGHKDFVLSVAT-----TQNDEYILSGSKDRGVLFWDKKS 341
Query: 324 GSLLFTLIGHDNWV------RGVTFHPGGKYLVSCGDDKTLRVW 361
           G+ L  L GH N V       G +  P      +   D   R+W
Sbjct: 342 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 126/280 (45%), Gaps = 45/280 (16%)
Query: 151 VQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR 210
           ++ + F   GK L + + D  +++WD+   + +  +QGH+ ++  + + P+ D ++S S 
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 211 DKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAE 269
           D+T+++W++ TG C  TL+   + V  + VSP DG  +A+ S D   RVW   T      
Sbjct: 186 DRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 270 L-------RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDV- 321
           L        GH  +V  V +     S                  + +GS D+++KLW++ 
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQS------------------VVSGSLDRSVKLWNLQ 286
Query: 322 -----------GSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMK 370
                       SG+   T IGH ++V  V      +Y++S   D+ +  WD  +   + 
Sbjct: 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 346
Query: 371 TLEAHSHFVTSLDFHRA------HPYVVTGSVDKTVKVWE 404
            L+ H + V S+           +    TGS D   ++W+
Sbjct: 347 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 19/119 (15%)
Query: 306 YLATGSRDKTIKLWDVGSGSLLFTL------------------IGHDNWVRGVTFHPGGK 347
           YLATG  +KT +++ V  GSL+  L                     D ++R V F P GK
Sbjct: 78  YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 136
Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           +L +  +D+ +R+WD  N++ +  L+ H   + SLD+  +   +V+GS D+TV++W+ R
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 138/325 (42%), Gaps = 44/325 (13%)
Query: 102 LSGHRSPVIKVIFHPV---FSLMASCSEDATIRLW---------DYETGEYERALHGHLD 149
           L+GHR  V  +         + + S S D T+  W         +   G  +R L GH  
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 150 SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS 209
            V D+A   +G   VS S D SL+LW++   QC     GH  +V  VAF P++  ++S  
Sbjct: 69  FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 210 RDKTIKMWEVATGYCVKTLT--GHREWVRQIKVSP--DGTLLASCSNDHTARVWSLATKE 265
           RD  +++W V  G C+ TL+   H +WV  ++ SP  D  ++ S   D+  +VW LAT  
Sbjct: 129 RDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 266 TKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGS 325
              +L+GH + V  V  +P                       A+  +D   +LWD+  G 
Sbjct: 188 LVTDLKGHTNYVTSVTVSP------------------DGSLCASSDKDGVARLWDLTKGE 229
Query: 326 LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF------- 378
            L  +      +  + F P  +Y +    +K +R++D  NK  +  L             
Sbjct: 230 ALSEMAAGAP-INQICFSP-NRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE 287
Query: 379 VTSLDFHRAHPYVVTGSVDKTVKVW 403
             S+ +      + +G  D  ++VW
Sbjct: 288 CVSIAWSADGSTLYSGYTDNVIRVW 312

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 32/213 (15%)
Query: 205 VLSASRDKTIKMW---------EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHT 255
           V+S SRDKT+  W         E + G   + L GH  +V  + +S +G    S S DH+
Sbjct: 31  VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 256 ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKT 315
            R+W+L   + + +  GH   V  VA++P                      + +G RD  
Sbjct: 91  LRLWNLQNGQCQYKFLGHTKDVLSVAFSP------------------DNRQIVSGGRDNA 132
Query: 316 IKLWDVGSGSLLFTLI--GHDNWVRGVTFHPG--GKYLVSCGDDKTLRVWDTANKRNMKT 371
           +++W+V  G  + TL    H +WV  V F P      +VS G D  ++VWD A  R +  
Sbjct: 133 LRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD 191
Query: 372 LEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
           L+ H+++VTS+          +   D   ++W+
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 311 SRDKTIKLW----DVGSGSLLFTLI-----GHDNWVRGVTFHPGGKYLVSCGDDKTLRVW 361
           SRDKT+  W    D  S    + L      GH  +V  V     G + VS   D +LR+W
Sbjct: 35  SRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLW 94
Query: 362 DTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           +  N +       H+  V S+ F   +  +V+G  D  ++VW  +
Sbjct: 95  NLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 127/268 (47%), Gaps = 18/268 (6%)
Query: 95  RAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDI 154
           R   +++L GH+  V+ V       + AS S DA IRLWD E G+  +++         +
Sbjct: 69  RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL 128
Query: 155 AFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTI 214
           AF    + L + +    + ++ + + +   ++      +  +A+ P+  ++ S + D  I
Sbjct: 129 AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188
Query: 215 KMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHD 274
            ++++ATG  + TL GH   +R +  SPD  LL + S+D   +++ +        L GH 
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Query: 275 HTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHD 334
             V  VA+ P                     +  + S DK++K+WDVG+ + + T   H 
Sbjct: 249 SWVLNVAFCP------------------DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ 290
Query: 335 NWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
           + V GV ++  G  +VS GDD+ + ++D
Sbjct: 291 DQVWGVKYNGNGSKIVSVGDDQEIHIYD 318

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 131/287 (45%), Gaps = 20/287 (6%)
Query: 121 MASCSEDATIRLWDY--ETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS 178
           + + S D  +++W +  E  + + +L GH   V  +    +  +  S S D  ++LWD+ 
Sbjct: 51  VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI 238
             + +K++     +   +AF P+S ++ + +    + ++ V +G    +L    +++  I
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSI 170
Query: 239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXX 298
             SPDG  LAS + D    ++ +AT +    L GH   +  + ++P              
Sbjct: 171 AYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-------------- 216
Query: 299 XXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTL 358
                   L T S D  IK++DV   +L  TL GH +WV  V F P   + VS   DK++
Sbjct: 217 ----DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSV 272
Query: 359 RVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC 405
           +VWD   +  + T   H   V  + ++     +V+   D+ + +++C
Sbjct: 273 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319

>pdb|1UUJ|A Chain A, N-Terminal Domain Of Lissencephaly-1 Protein (Lis-1) Length = 88

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 2  VLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPA--EVEKKYSGLLEKKWTSVIRL 59
          VLSQRQR+ELN+A+ADYL SNGY  A   FKK+A+L    E++KKY+GLLEKKWTSVIRL
Sbjct: 4  VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDXNEELDKKYAGLLEKKWTSVIRL 63
Query: 60 QKKVIXXXXXXXXXXXXYVEGAP 82
          QKKV             +  G P
Sbjct: 64 QKKVXELESKLNEAKEEFTSGGP 86

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 121/271 (44%), Gaps = 13/271 (4%)
Query: 143 ALHGHLDSVQD-IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPN 201
            L GH+ SV   + F+ +   +++ + D  ++++D    + L  + GHD  V  + +  +
Sbjct: 116 TLRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AH 172
Query: 202 SDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL--LASCSNDHTARVW 259
              ++S S D+T+++W++  G C     GH   VR + +     +  + + S D+T  VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 260 SLATKETKAELRGHDHTVECVAWAPGVASESIS----EAAXXXXXXXXXXYLATGSRDKT 315
            L  KE+     G +H    V   P      +       A           + +GS D T
Sbjct: 233 KLP-KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 291
Query: 316 IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
           + +WDV     L+ L GH + +    +    K  +S   D T+R+WD  N   M TL+ H
Sbjct: 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 351
Query: 376 SHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           +  V  L    +  ++V+ + D +++ W+  
Sbjct: 352 TALVGLLRL--SDKFLVSAAADGSIRGWDAN 380

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 88.2 bits (217), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 119/271 (43%), Gaps = 13/271 (4%)
Query: 143 ALHGHLDSVQD-IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPN 201
            L GH  SV   + F+ +   +++ + D  ++++D    + L  + GHD  V  + +  +
Sbjct: 116 TLRGHXTSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AH 172
Query: 202 SDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL--LASCSNDHTARVW 259
              ++S S D+T+++W++  G C     GH   VR + +     +  + + S D+T  VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 260 SLATKETKAELRGHDHTVECVAWAPGVASESIS----EAAXXXXXXXXXXYLATGSRDKT 315
            L  KE+     G +H    V   P      +       A           + +GS D T
Sbjct: 233 KLP-KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNT 291
Query: 316 IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
           + +WDV     L+ L GH + +    +    K  +S   D T+R+WD  N     TL+ H
Sbjct: 292 LIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGH 351
Query: 376 SHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           +  V  L    +  ++V+ + D +++ W+  
Sbjct: 352 TALVGLLRL--SDKFLVSAAADGSIRGWDAN 380

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 132/316 (41%), Gaps = 36/316 (11%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
           L GH + V+ + +      + S S+D  + +WD  T   E A+      V   A+  SG 
Sbjct: 60  LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC 119
Query: 162 LLVSCSADMSLKLW--------DMSTYQCLKTMQGHDHNVTGVAFLPNSDF-VLSASRDK 212
            +     D    ++        +M+  +  K++  H + ++  +F  NSD  +L+AS D 
Sbjct: 120 AIACGGLDNKCSVYPLTFDKNENMAAKK--KSVAMHTNYLSACSF-TNSDMQILTASGDG 176
Query: 213 TIKMWEVATGYCVKTLTGHREWVRQIKVSPD--GTLLASCSNDHTARVWSLATKETKAEL 270
           T  +W+V +G  +++  GH   V  + ++P   G    S   D  A VW + + +     
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Query: 271 RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTL 330
             H+  V  V + P                       A+GS D T +L+D+ +   +  +
Sbjct: 237 ETHESDVNSVRYYP------------------SGDAFASGSDDATCRLYDLRADREV-AI 277
Query: 331 IGHDNWVRG---VTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA 387
              ++ + G   V F   G+ L +  +D T+ VWD      +  L  H + V++L     
Sbjct: 278 YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD 337
Query: 388 HPYVVTGSVDKTVKVW 403
                +GS D T++VW
Sbjct: 338 GTAFCSGSWDHTLRVW 353

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 14/225 (6%)
Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
           +T++GH + V  + +  +   ++S+S+D  + +W+  T      +T    WV     +P 
Sbjct: 58  RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 244 GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXX 303
           G  +A    D+   V+ L            D      A    VA  +   +A        
Sbjct: 118 GCAIACGGLDNKCSVYPLT----------FDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 304 XXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPG--GKYLVSCGDDKTLRVW 361
               A+G  D T  LWDV SG LL +  GH   V  +   P   G   VS G DK   VW
Sbjct: 168 QILTASG--DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
Query: 362 DTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           D  + + ++  E H   V S+ ++ +     +GS D T ++++ R
Sbjct: 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 124/278 (44%), Gaps = 43/278 (15%)
Query: 120 LMASCSEDATIRLWD-YET------GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSL 172
           ++ S S D T+ +W  YE       G   +AL GH   V D+A  Q     +S S D +L
Sbjct: 41  VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 173 KLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT--- 229
           +LWD+ T    K   GH   V  VAF P++  +LSA  ++ IK+W +  G C  +     
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI-LGECKFSSAEKE 159
Query: 230 GHREWVRQI----------KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVEC 279
            H +WV  +          KV P     AS   D   +VW+    + +   + H+  V  
Sbjct: 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNH 218
Query: 280 VAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRG 339
           ++ +P                     Y+ATG +DK + +WD+ + +         + +  
Sbjct: 219 LSISPN------------------GKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQ 260
Query: 340 VTFHPGGKYLVSCGDDKTLRVWD--TANKRNMKTLEAH 375
           + F+P  ++ V+ G D+ +++++  T +K  + T+EA 
Sbjct: 261 IAFNPKLQW-VAVGTDQGVKIFNLMTQSKAPVCTIEAE 297

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 103/245 (42%), Gaps = 46/245 (18%)
Query: 186 MQGHDHNVT----GVAFLPNSD--FVLSASRDKTIKMW----EVATGYCV---KTLTGHR 232
           ++GH   VT    G +   N D   ++S SRDKT+ +W    E   GY     K LTGH 
Sbjct: 17  LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 233 EWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESIS 292
            +V  + +S +     S S D T R+W L T  T     GH   V  VA++P        
Sbjct: 77  HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-------- 128
Query: 293 EAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLI---GHDNWVRGVTF------- 342
                         L+ G+ ++ IKLW++  G   F+      H +WV  V +       
Sbjct: 129 ---------DNRQILSAGA-EREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSA 177
Query: 343 ---HPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKT 399
               P   Y  S G D  L+VW+T N +   T +AH   V  L       Y+ TG  DK 
Sbjct: 178 NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236
Query: 400 VKVWE 404
           + +W+
Sbjct: 237 LLIWD 241

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 330 LIGHDNWVRGVTFHPGGK------YLVSCGDDKTLRVWDTANKRNM-------KTLEAHS 376
           L GH +WV  +      K       L+S   DKT+ +W    +          K L  H+
Sbjct: 17  LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 377 HFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           HFV+ L   + + + ++ S DKT+++W+ R
Sbjct: 77  HFVSDLALSQENCFAISSSWDKTLRLWDLR 106

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 27/310 (8%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
           L GH + +  + +     L+ S S+D  + +WD  T     A+      V   A+  SG 
Sbjct: 62  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 121
Query: 162 LLVSCSADMSLKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
            +     D    ++++ T +      + + GH   ++   FL ++  V S S D T  +W
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALW 180
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
           ++ TG    T TGH   V  + ++PD  L  S + D +A++W +     +    GH+  +
Sbjct: 181 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 240
Query: 278 ECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
             + + P   +                   ATGS D T +L+D+ +   L T   HDN +
Sbjct: 241 NAICFFPNGNA------------------FATGSDDATCRLFDLRADQELMTY-SHDNII 281
Query: 338 RGVT---FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG 394
            G+T   F   G+ L++  DD    VWD         L  H + V+ L        V TG
Sbjct: 282 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 341
Query: 395 SVDKTVKVWE 404
           S D  +K+W 
Sbjct: 342 SWDSFLKIWN 351

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 23/227 (10%)
Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
           +T++GH   +  + +  +S  ++SAS+D  + +W+  T   V  +     WV     +P 
Sbjct: 60  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 244 GTLLASCSNDHTARVWSLATKETKA----ELRGHDHTVECVAWAPGVASESISEAAXXXX 299
           G  +A    D+   +++L T+E       EL GH   + C  +                 
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--------------- 164
Query: 300 XXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR 359
                  + T S D T  LWD+ +G    T  GH   V  ++  P  +  VS   D + +
Sbjct: 165 ----DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 220
Query: 360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           +WD       +T   H   + ++ F        TGS D T ++++ R
Sbjct: 221 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 27/310 (8%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
           L GH + +  + +     L+ S S+D  + +WD  T     A+      V   A+  SG 
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 162 LLVSCSADMSLKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
            +     D    ++++ T +      + + GH   ++   FL ++  V S S D T  +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALW 169
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
           ++ TG    T TGH   V  + ++PD  L  S + D +A++W +     +    GH+  +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 278 ECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
             + + P   +                   ATGS D T +L+D+ +   L T   HDN +
Sbjct: 230 NAICFFPNGNA------------------FATGSDDATCRLFDLRADQELMTY-SHDNII 270
Query: 338 RGVT---FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG 394
            G+T   F   G+ L++  DD    VWD         L  H + V+ L        V TG
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 395 SVDKTVKVWE 404
           S D  +K+W 
Sbjct: 331 SWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 23/227 (10%)
Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
           +T++GH   +  + +  +S  ++SAS+D  + +W+  T   V  +     WV     +P 
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 244 GTLLASCSNDHTARVWSLATKETKA----ELRGHDHTVECVAWAPGVASESISEAAXXXX 299
           G  +A    D+   +++L T+E       EL GH   + C  +                 
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--------------- 153
Query: 300 XXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR 359
                  + T S D T  LWD+ +G    T  GH   V  ++  P  +  VS   D + +
Sbjct: 154 ----DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           +WD       +T   H   + ++ F        TGS D T ++++ R
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 27/310 (8%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
           L GH + +  + +     L+ S S+D  + +WD  T     A+      V   A+  SG 
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 162 LLVSCSADMSLKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
            +     D    ++++ T +      + + GH   ++   FL ++  V S S D T  +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALW 169
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
           ++ TG    T TGH   V  + ++PD  L  S + D +A++W +     +    GH+  +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 278 ECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
             + + P   +                   ATGS D T +L+D+ +   L T   HDN +
Sbjct: 230 NAICFFPNGNA------------------FATGSDDATCRLFDLRADQELMTY-SHDNII 270
Query: 338 RGVT---FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG 394
            G+T   F   G+ L++  DD    VWD         L  H + V+ L        V TG
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 395 SVDKTVKVWE 404
           S D  +K+W 
Sbjct: 331 SWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 23/227 (10%)
Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
           +T++GH   +  + +  +S  ++SAS+D  + +W+  T   V  +     WV     +P 
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 244 GTLLASCSNDHTARVWSLATKETKA----ELRGHDHTVECVAWAPGVASESISEAAXXXX 299
           G  +A    D+   +++L T+E       EL GH   + C  +                 
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--------------- 153
Query: 300 XXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR 359
                  + T S D T  LWD+ +G    T  GH   V  ++  P  +  VS   D + +
Sbjct: 154 ----DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           +WD       +T   H   + ++ F        TGS D T ++++ R
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 27/310 (8%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
           L GH + +  + +     L+ S S+D  + +WD  T     A+      V   A+  SG 
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 162 LLVSCSADMSLKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
            +     D    ++++ T +      + + GH   ++   FL ++  V S S D T  +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALW 169
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
           ++ TG    T TGH   V  + ++PD  L  S + D +A++W +     +    GH+  +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 278 ECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
             + + P   +                   ATGS D T +L+D+ +   L T   HDN +
Sbjct: 230 NAICFFPNGNA------------------FATGSDDATCRLFDLRADQELMTY-SHDNII 270
Query: 338 RGVT---FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG 394
            G+T   F   G+ L++  DD    VWD         L  H + V+ L        V TG
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 395 SVDKTVKVWE 404
           S D  +K+W 
Sbjct: 331 SWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 23/227 (10%)
Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
           +T++GH   +  + +  +S  +LSAS+D  + +W+  T   V  +     WV     +P 
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 244 GTLLASCSNDHTARVWSLATKETKA----ELRGHDHTVECVAWAPGVASESISEAAXXXX 299
           G  +A    D+   +++L T+E       EL GH   + C  +                 
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--------------- 153
Query: 300 XXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR 359
                  + T S D T  LWD+ +G    T  GH   V  ++  P  +  VS   D + +
Sbjct: 154 ----DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           +WD       +T   H   + ++ F        TGS D T ++++ R
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 27/310 (8%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
           L GH + +  + +     L+ S S+D  + +WD  T     A+      V   A+  SG 
Sbjct: 51  LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 162 LLVSCSADMSLKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
            +     D    ++++ T +      + + GH   ++   FL ++  V S S D T  +W
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALW 169
Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
           ++ TG    T TGH   V  + ++PD  L  S + D +A++W +     +    GH+  +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 278 ECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
             + + P   +                   ATGS D T +L+D+ +   L T   HDN +
Sbjct: 230 NAICFFPNGNA------------------FATGSDDATCRLFDLRADQELMTY-SHDNII 270
Query: 338 RGVT---FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG 394
            G+T   F   G+ L++  DD    VWD         L  H + V+ L        V TG
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 395 SVDKTVKVWE 404
           S D  +K+W 
Sbjct: 331 SWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 23/227 (10%)
Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
           +T++GH   +  + +  +S  +LSAS+D  + +W+  T   V  +     WV     +P 
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 244 GTLLASCSNDHTARVWSLATKETKA----ELRGHDHTVECVAWAPGVASESISEAAXXXX 299
           G  +A    D+   +++L T+E       EL GH   + C  +                 
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--------------- 153
Query: 300 XXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR 359
                  + T S D T  LWD+ +G    T  GH   V  ++  P  +  VS   D + +
Sbjct: 154 ----DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           +WD       +T   H   + ++ F        TGS D T ++++ R
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 31/290 (10%)
Query: 127 DATIRLWDYETGEYERALHGHL--DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK 184
           D ++ LW   +G+  + L      + +  +A+ + G  L   ++   ++LWD+   + L+
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSPD 243
            M  H   V  +++  NS  + S SR   I   +V    + V TL+GH + V  ++ +PD
Sbjct: 184 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241
Query: 244 GTLLASCSNDHTARVWSLATKETK----AELRGHDHTVECVAWAPGVASESISEAAXXXX 299
           G  LAS  ND+   VW  A  E           H   V+ VAW P  ++           
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN----------- 290
Query: 300 XXXXXXYLAT--GSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD--D 355
                  LAT  G+ D+ I++W+V SG+ L  +  H   V  + + P  K L+S      
Sbjct: 291 ------VLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 343
Query: 356 KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC 405
             L +W       +  L+ H+  V SL        V + + D+T+++W C
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 31/290 (10%)
Query: 127 DATIRLWDYETGEYERALHGHL--DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK 184
           D ++ LW   +G+  + L      + +  +A+ + G  L   ++   ++LWD+   + L+
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSPD 243
            M  H   V  +++  NS  + S SR   I   +V    + V TL+GH + V  ++ +PD
Sbjct: 195 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 252
Query: 244 GTLLASCSNDHTARVWSLATKETK----AELRGHDHTVECVAWAPGVASESISEAAXXXX 299
           G  LAS  ND+   VW  A  E           H   V+ VAW P  ++           
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN----------- 301
Query: 300 XXXXXXYLAT--GSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD--D 355
                  LAT  G+ D+ I++W+V SG+ L  +  H   V  + + P  K L+S      
Sbjct: 302 ------VLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 354
Query: 356 KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC 405
             L +W       +  L+ H+  V SL        V + + D+T+++W C
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 404

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 31/290 (10%)
Query: 127 DATIRLWDYETGEYERALHGHL--DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK 184
           D ++ LW   +G+  + L      + +  +A+ + G  L   ++   ++LWD+   + L+
Sbjct: 44  DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSPD 243
            M  H   V  +++  NS  + S SR   I   +V    + V TL+GH + V  ++ +PD
Sbjct: 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161
Query: 244 GTLLASCSNDHTARVWSLATKETK----AELRGHDHTVECVAWAPGVASESISEAAXXXX 299
           G  LAS  ND+   VW  A  E           H   V+ VAW P  ++           
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN----------- 210
Query: 300 XXXXXXYLAT--GSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD--D 355
                  LAT  G+ D+ I++W+V SG+ L  +  H   V  + + P  K L+S      
Sbjct: 211 ------VLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 263
Query: 356 KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC 405
             L +W       +  L+ H+  V SL        V + + D+T+++W C
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 130/292 (44%), Gaps = 36/292 (12%)
Query: 119 SLMASCSEDATIRLW---DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK-- 173
           S +AS S D T+RLW   D   G       G L+SV    +D   +LL+    D  +   
Sbjct: 30  SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSV---CYDSEKELLLFGGKDTXINGV 86
Query: 174 -LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR 232
            L+  S    L T+ GH  NV  ++F      V+S S DKT K+W+   G  V  L  H 
Sbjct: 87  PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHN 142
Query: 233 EWVRQIKV-SPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESI 291
             V   KV S       + S D T ++W             +D  ++  +   G+ ++ +
Sbjct: 143 ASVWDAKVVSFSENKFLTASADKTIKLWQ------------NDKVIKTFS---GIHNDVV 187
Query: 292 SEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVS 351
              A          +  + S D  IKL D  +G +L T  GH+++V  +   P G  +VS
Sbjct: 188 RHLAVVDDG-----HFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVS 241
Query: 352 CGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
           CG+D+T+R+W   N    + +   +  + S+D   ++  ++ GS D  V+++
Sbjct: 242 CGEDRTVRIWSKENGSLKQVITLPAISIWSVDC-XSNGDIIVGSSDNLVRIF 292

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLW-DYETG-EYERALHGHLDSVQDIAFDQS 159
           L  H   V  VI+HP  +L+AS S D T+R+W DY+   E    L+GH  +V    FD++
Sbjct: 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT 208
Query: 160 GKLLVSCSA--DMSLKLW--------DMSTYQCLKTMQG-HDHNVTGVAFLPNSDFVLSA 208
             +   CS   D ++++W        D   + C   +   H   V  VA+  N   + S 
Sbjct: 209 EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASV 267
Query: 209 SRDKTIKMWEVATG----YCVKTLTGHREWVRQIK-VSPDG-TLLASCSNDHTARVWSL 261
             D  + ++E   G    +  + L      +  +K +  +G T+LA+  +D     WSL
Sbjct: 268 GADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 49/252 (19%)
Query: 177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL------TG 230
           M++   +K+++ +   +    F  +   + + S D+ IK+  V+  Y   TL      T 
Sbjct: 1   MASINLIKSLKLYKEKIWSFDF--SQGILATGSTDRKIKL--VSVKYDDFTLIDVLDETA 56
Query: 231 HREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAE----------LRGHDHTVECV 280
           H++ +R +   P  +LLA+ S D T  +W+   KE  A+          + GH++ V+ V
Sbjct: 57  HKKAIRSVAWRPHTSLLAAGSFDSTVSIWA---KEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 281 AWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIG----HDNW 336
           AW+                      YLAT SRDK++ +W+       +  I     H   
Sbjct: 114 AWSN------------------DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
Query: 337 VRGVTFHPGGKYLVSCGDDKTLRVWDTANK--RNMKTLEAHSHFVTSLDFHRAHPY--VV 392
           V+ V +HP    L S   D T+R+W   +     +  L  H   V S DF +      + 
Sbjct: 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215
Query: 393 TGSVDKTVKVWE 404
           +GS D TV+VW+
Sbjct: 216 SGSDDSTVRVWK 227

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 135/328 (41%), Gaps = 44/328 (13%)
Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
           L GH   V  + + P  + + S S+D  + +W+  T +   A+  H   V + AF  +G+
Sbjct: 62  LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 162 LLVSCSADMSLKLWDMST-------YQCLKTMQGHDHNVTGVAFLPNSDF-VLSASRDKT 213
            +     D +  ++++S+           + + GH    +   ++P+ +  +++ S D+T
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 214 IKMWEVATGYCVKTL-----TGHREWVRQIKV-SPDGTLLASCSNDHTARVWSL-ATKET 266
             +W+V TG  +        +GH   V  + + S +  +  S S D T R+W L  T   
Sbjct: 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241
Query: 267 KAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL 326
                GH+  +  V + P                        TGS D T +L+D+ +G  
Sbjct: 242 VRTYHGHEGDINSVKFFP------------------DGQRFGTGSDDGTCRLFDMRTGHQ 283
Query: 327 LFTLI----GHDN---WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR---NMKTLE-AH 375
           L         +DN    V  V F   G+ L +   +    VWDT       N+ TL+ +H
Sbjct: 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343
Query: 376 SHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
              ++ L        + TGS DK +K+W
Sbjct: 344 EGRISCLGLSSDGSALCTGSWDKNLKIW 371

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 31/239 (12%)
Query: 182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVS 241
           C +T+QGH   V  + + P  ++++SAS+D  + +W   T      +  H  WV +   +
Sbjct: 58  CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 242 PDGTLLASCSNDHTARVWSLATKETKAE-------LRGHDHTVECVAWAPGVASESISEA 294
           P+G  +A    D    +++L+++  +         L GH        + P   +      
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR----- 172
Query: 295 AXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTL-----IGHDNWVRGVTFHP-GGKY 348
                       L TGS D+T  LWDV +G  +         GH   V  ++ +      
Sbjct: 173 ------------LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 349 LVSCGDDKTLRVWDT-ANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
            +S   D T+R+WD     R ++T   H   + S+ F        TGS D T ++++ R
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 104/253 (41%), Gaps = 24/253 (9%)
Query: 145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFL-PN 201
           + H + + D   D  GK L +CS+D ++K++++   T++ + T+ GH+  V  V +  P 
Sbjct: 6   NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 202 SDFVL-SASRDKTIKMWEVATGY--CVKTLTGHREWVRQIKVSPD--GTLLASCSNDHTA 256
              +L S S D  + +W+   G    +     H   V  ++ +P   G LL   S+D   
Sbjct: 66  FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125
Query: 257 RVWSLATKETKAEL--RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDK 314
            V       T + +    H   V   +WAP    E                   TG  D 
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK-----FVTGGADN 180
Query: 315 TIKLWDVGSGSLLF----TLIGHDNWVRGVTFHPG---GKYLVSCGDDKTLRVWDTANKR 367
            +K+W   S +  +    TL GH +WVR V + P      YL S   D+T  +W   N++
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240
Query: 368 N--MKTLEAHSHF 378
               KTL     F
Sbjct: 241 GPWKKTLLKEEKF 253

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 24/253 (9%)
Query: 145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFL-PN 201
           + H + + D   D  GK L +CS+D ++K++++   T++ + T+ GH+  V  V +  P 
Sbjct: 8   NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 67
Query: 202 SDFVL-SASRDKTIKMWEVATGYC--VKTLTGHREWVRQIKVSPD--GTLLASCSNDHTA 256
              +L S S D  + +W+   G    +     H   V  ++ +P   G LL   S+D   
Sbjct: 68  FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 127
Query: 257 RVWSLATKETKAEL--RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDK 314
            V       T + +    H   V   +WAP     +I E            ++ TG  D 
Sbjct: 128 SVVEFKENGTTSPIIIDAHAIGVNSASWAPA----TIEEDGEHNGTKESRKFV-TGGADN 182
Query: 315 TIKLWDVGSGSLLF----TLIGHDNWVRGVTFHPG---GKYLVSCGDDKTLRVWDTANKR 367
            +K+W   S +  +    TL GH +WVR V + P      YL S   D+T  +W   N++
Sbjct: 183 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242
Query: 368 N--MKTLEAHSHF 378
               KTL     F
Sbjct: 243 GPWKKTLLKEEKF 255

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 24/253 (9%)
Query: 145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFL-PN 201
           + H + + D   D  GK L +CS+D ++K++++   T++ + T+ GH+  V  V +  P 
Sbjct: 6   NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 202 SDFVL-SASRDKTIKMWEVATGYC--VKTLTGHREWVRQIKVSPD--GTLLASCSNDHTA 256
              +L S S D  + +W+   G    +     H   V  ++ +P   G LL   S+D   
Sbjct: 66  FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125
Query: 257 RVWSLATKETKAEL--RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDK 314
            V       T + +    H   V   +WAP     +I E            ++ TG  D 
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPA----TIEEDGEHNGTKESRKFV-TGGADN 180
Query: 315 TIKLWDVGSGSLLF----TLIGHDNWVRGVTFHPG---GKYLVSCGDDKTLRVWDTANKR 367
            +K+W   S +  +    TL GH +WVR V + P      YL S   D+T  +W   N++
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240
Query: 368 N--MKTLEAHSHF 378
               KTL     F
Sbjct: 241 GPWKKTLLKEEKF 253

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 22/240 (9%)
Query: 145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFL-PN 201
           + H + + D   D  GK + +CS+D ++K++++   T++ + T+ GH+  V  V +  P 
Sbjct: 6   NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 202 SDFVL-SASRDKTIKMWEVATGYC--VKTLTGHREWVRQIKVSPD--GTLLASCSNDHTA 256
              +L S S D  + +W+   G    +     H   V  ++ +P   G +L   S+D   
Sbjct: 66  FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV 125
Query: 257 RVWSLATKETKAEL--RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDK 314
            V       T + +    H   V   +WAP     +I E            ++ TG  D 
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPA----TIEEDGEHNGTKESRKFV-TGGADN 180
Query: 315 TIKLWDVGSGSLLF----TLIGHDNWVRGVTFHPG---GKYLVSCGDDKTLRVWDTANKR 367
            +K+W   S +  +    TL GH +WVR V + P      Y+ S   D+T  +W   N++
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 102/247 (41%), Gaps = 14/247 (5%)
Query: 135 YETGEYERA--LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
           Y  G + +A  L GH   +  + +++ G LL SCS D S  +W     + L T+ GH   
Sbjct: 17  YFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGT 76
Query: 193 VTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREW-----VRQIKVSPDGTLL 247
           +  +     + + ++ S D +IK+W+V+ G CV T      W     V++++ SP G   
Sbjct: 77  IWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT------WKSPVPVKRVEFSPCGNYF 130
Query: 248 ASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYL 307
            +  ++      S+   E + +   H+ T         + +    +AA          Y+
Sbjct: 131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI 190
Query: 308 ATGSRDKTIKLWDVGSGSLLFTLIG-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK 366
             G +D  I  +DV +       I  H+  +  + F P   Y ++   D    + D +  
Sbjct: 191 IAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250
Query: 367 RNMKTLE 373
           + +K  E
Sbjct: 251 QVLKKYE 257

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 317 KLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
            L+  GS      L GH+  +  V ++  G  L SC  D +  VW + N   + TL+ H+
Sbjct: 15  NLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT 74
Query: 377 HFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
             + S+D      Y VTGS D ++K+W+
Sbjct: 75  GTIWSIDVDCFTKYCVTGSADYSIKLWD 102

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 25/237 (10%)
Query: 171 SLKLWDMS--TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL 228
           +L +WD++  T +    +         +A  P+S    S   D  I +W++     V+  
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 229 TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVAS 288
            GH +    I +S DGT L +   D+T R W L  +E + +L+ HD T +  +       
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL--REGR-QLQQHDFTSQIFSLGYCPTG 236
Query: 289 ESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKY 348
           E                +LA G     +++  V      + L  H++ V  + F   GK+
Sbjct: 237 E----------------WLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKW 279
Query: 349 LVSCGDDKTLRVWDTANKRNM-KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
            VS G D  L  W T    ++ ++ E+ S  V S D      Y+VTGS DK   V+E
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKESSS--VLSCDISVDDKYIVTGSGDKKATVYE 334

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 307 LATGSRDKTIKLWDVGSGS--LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA 364
           L  G    T+ +WD+ + +  +   L         +   P  K   SC  D  + VWD  
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 365 NKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           N+  ++  + H+   + +D       + TG +D TV+ W+ R
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV 164
           H S + K+ F P    + S S+D  +++W  + G   R L GH  +V DIA    G+ ++
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 165 SCSADMSLKLWDMSTYQCLKTMQGHDH---NVTGVAFLPNSDFVL---SASRDKTIKMWE 218
           S S D +++LW+  T   + T    ++    V  +A    +D  L   S S+   ++   
Sbjct: 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257
Query: 219 ----VATGYCVKTLTGHREWVRQIKVSPDGTLLASCS 251
               V  G+    +T H  + ++  +        SC+
Sbjct: 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN 294

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL 246
           Q H   +T + F P+ + ++S+S+D  +K+W V  G   +TL GHR  V  I +   G  
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 247 LASCSNDHTARVWSLATKET 266
           + S S D T R+W   T  T
Sbjct: 196 VLSASLDGTIRLWECGTGTT 215

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVV 392
           H + +  + F P G+ L+S   D  L++W   +  N +TL  H   VT +        V+
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 393 TGSVDKTVKVWEC 405
           + S+D T+++WEC
Sbjct: 198 SASLDGTIRLWEC 210

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV 164
           H S + K+ F P    + S S+D  +++W  + G   R L GH  +V DIA    G+ ++
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 165 SCSADMSLKLWDMSTYQCLKTMQGHDH---NVTGVAFLPNSDFVL---SASRDKTIKMWE 218
           S S D +++LW+  T   + T    ++    V  +A    +D  L   S S+   ++   
Sbjct: 195 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 254
Query: 219 ----VATGYCVKTLTGHREWVRQIKVSPDGTLLASCS 251
               V  G+    +T H  + ++  +        SC+
Sbjct: 255 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN 291

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL 246
           Q H   +T + F P+ + ++S+S+D  +K+W V  G   +TL GHR  V  I +   G  
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 247 LASCSNDHTARVWSLATKET 266
           + S S D T R+W   T  T
Sbjct: 193 VLSASLDGTIRLWECGTGTT 212

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVV 392
           H + +  + F P G+ L+S   D  L++W   +  N +TL  H   VT +        V+
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 393 TGSVDKTVKVWEC 405
           + S+D T+++WEC
Sbjct: 195 SASLDGTIRLWEC 207

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 102 LSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYE-------RALHGHLDSVQD 153
           L GH+     + ++P  +  + S S+D TI LWD      E           GH   V+D
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 154 IAFD-QSGKLLVSCSADMSLKLWDMSTYQCLK---TMQGHDHNVTGVAFLPNSDFVL-SA 208
           +A+      L  S + D  L +WD       K   T+  H   V  ++F P S+F+L + 
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 209 SRDKTIKMWEVAT-GYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLA 262
           S DKT+ +W++      + +   H++ + Q++ SP + T+LAS   D    VW L+
Sbjct: 299 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 29/149 (19%)
Query: 270 LRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFT 329
           LRGH      ++W P +                   YL + S D TI LWD+ +      
Sbjct: 179 LRGHQKEGYGLSWNPNLNG-----------------YLLSASDDHTICLWDINATPKEHR 221
Query: 330 LI-------GHDNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTANKRNMK---TLEAHSHF 378
           +I       GH   V  V +H   + L  S  DD+ L +WDT N    K   T++AH+  
Sbjct: 222 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 281
Query: 379 VTSLDFHRAHPYVV-TGSVDKTVKVWECR 406
           V  L F+    +++ TGS DKTV +W+ R
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLR 310

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 117/280 (41%), Gaps = 23/280 (8%)
Query: 147 HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST--YQCLKTMQGHDHNVTGVAFLPN--S 202
           H D + D   D  G  L +CS+D S+K++D+       +  ++GH+  V  VA+      
Sbjct: 12  HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 203 DFVLSASRDKTIKMWEVATGYCVKT--LTGHREWVRQIKVSP-DGTLLASCSNDHTARVW 259
           + + S S D+ + +W    G   K+    GH   V  +  +P D  L+ +C +   A   
Sbjct: 72  NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
Query: 260 SLATKETKAELR--GHDHTVEC--VAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKT 315
              T E + E++   + HT+ C  V+WAP V   S+ +            + A+G  D  
Sbjct: 132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRF-ASGGCDNL 190
Query: 316 IKLW---DVGSGSLLFTLIGHDNWVRGVTFHPG----GKYLVSCGDDKTLRVWD----TA 364
           IKLW   + G       L  H +WVR V + P        + SC  D  + +W     ++
Sbjct: 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS 250
Query: 365 NKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
           N  + K L   +  V  + +      +     D  V +W+
Sbjct: 251 NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 102 LSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYE-------RALHGHLDSVQD 153
           L GH+     + ++P  +  + S S+D TI LWD      E           GH   V+D
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 154 IAFD-QSGKLLVSCSADMSLKLWDMSTYQCLK---TMQGHDHNVTGVAFLPNSDFVL-SA 208
           +A+      L  S + D  L +WD       K   T+  H   V  ++F P S+F+L + 
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 209 SRDKTIKMWEVAT-GYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLA 262
           S DKT+ +W++      + +   H++ + Q++ SP + T+LAS   D    VW L+
Sbjct: 301 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 29/149 (19%)
Query: 270 LRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFT 329
           LRGH      ++W P +                   YL + S D TI LWD+ +      
Sbjct: 181 LRGHQKEGYGLSWNPNLNG-----------------YLLSASDDHTICLWDINATPKEHR 223
Query: 330 LI-------GHDNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTANKRNMK---TLEAHSHF 378
           +I       GH   V  V +H   + L  S  DD+ L +WDT N    K   T++AH+  
Sbjct: 224 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 283
Query: 379 VTSLDFHRAHPYVV-TGSVDKTVKVWECR 406
           V  L F+    +++ TGS DKTV +W+ R
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLR 312

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 102 LSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYE-------RALHGHLDSVQD 153
           L GH+     + ++P  +  + S S+D TI LWD      E           GH   V+D
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 154 IAFD-QSGKLLVSCSADMSLKLWDMSTYQCLK---TMQGHDHNVTGVAFLPNSDFVL-SA 208
           +A+      L  S + D  L +WD       K   T+  H   V  ++F P S+F+L + 
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 209 SRDKTIKMWEVAT-GYCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLA 262
           S DKT+ +W++      + +   H++ + Q++ SP + T+LAS   D    VW L+
Sbjct: 297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 66/149 (44%), Gaps = 29/149 (19%)
Query: 270 LRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFT 329
           LRGH      ++W P +                   YL + S D TI LWD+ +      
Sbjct: 177 LRGHQKEGYGLSWNPNLNG-----------------YLLSASDDHTICLWDINATPKEHR 219
Query: 330 LI-------GHDNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTANKRNMK---TLEAHSHF 378
           +I       GH   V  V +H   + L  S  DD+ L +WDT N    K   T++AH+  
Sbjct: 220 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279
Query: 379 VTSLDFHRAHPYVV-TGSVDKTVKVWECR 406
           V  L F+    +++ TGS DKTV +W+ R
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLR 308

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 105/253 (41%), Gaps = 24/253 (9%)
Query: 145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFL-PN 201
           + H + + D   D  GK   +CS+D ++K++++   T++ + T+ GH+  V  V +  P 
Sbjct: 6   NAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 202 SDFVL-SASRDKTIKMWEVATGYC--VKTLTGHREWVRQIKVSPD--GTLLASCSNDHTA 256
              +L S S D  + +W+   G    +     H   V  ++ +P   G  L   S+D   
Sbjct: 66  FGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKV 125
Query: 257 RVWSLATKETKAEL--RGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDK 314
            V       T + +    H   V   +WAP     +I E            ++ TG  D 
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPA----TIEEDGEHNGTKESRKFV-TGGADN 180
Query: 315 TIKLWDVGSGSLLF----TLIGHDNWVRGVTFHPG---GKYLVSCGDDKTLRVWDTANKR 367
            +K+W   S +  +    TL GH +WVR V + P      Y  S   D+T  +W   N++
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQ 240
Query: 368 N--MKTLEAHSHF 378
               KTL     F
Sbjct: 241 GPWKKTLLKEEKF 253

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 106/248 (42%), Gaps = 46/248 (18%)
Query: 186 MQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVAT----GYCVKT---LTGHREWVRQ 237
           ++GH     G+++ PN S  +LSAS D TI +W+++     G  V      TGH   V  
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 238 IKVSP-DGTLLASCSNDHTARVWSLATKETKA---ELRGHDHTVECVAWAPGVASESISE 293
           +       +L  S ++D    +W   +  T      +  H   V C+++ P   SE I  
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNP--YSEFI-- 288
Query: 294 AAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL-LFTLIGHDNWVRGVTFHPGGK-YLVS 351
                        LATGS DKT+ LWD+ +  L L +   H + +  V + P  +  L S
Sbjct: 289 -------------LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 352 CGDDKTLRVWDTANKRNMKTLE--------------AHSHFVTSLDFHRAHPYVVTG-SV 396
            G D+ L VWD +     ++ E               H+  ++   ++   P+V+   S 
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 395
Query: 397 DKTVKVWE 404
           D  ++VW+
Sbjct: 396 DNIMQVWQ 403

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 33/151 (21%)
Query: 270 LRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGS------ 323
           LRGH      ++W P ++                  +L + S D TI LWD+ +      
Sbjct: 173 LRGHQKEGYGLSWNPNLSG-----------------HLLSASDDHTICLWDISAVPKEGK 215
Query: 324 ---GSLLFTLIGHDNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTANKRNMK---TLEAHS 376
                 +FT  GH   V  V++H   + L  S  DD+ L +WDT +    K   +++AH+
Sbjct: 216 VVDAKTIFT--GHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT 273
Query: 377 HFVTSLDFHRAHPYVV-TGSVDKTVKVWECR 406
             V  L F+    +++ TGS DKTV +W+ R
Sbjct: 274 AEVNCLSFNPYSEFILATGSADKTVALWDLR 304

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 121 MASCSEDATIRLWDYETGEYERAL-------HGHLDSVQDIAFD-QSGKLLVSCSADMSL 172
           + S S+D T+ LWD   G  E  +        GH   V+D+A+      L  S + D  L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 173 KLWDM---STYQCLKTMQGHDHNVTGVAFLPNSDFVL-SASRDKTIKMWEVAT-GYCVKT 227
            +WD    +T +    +  H   V  ++F P S+F+L + S DKT+ +W++      + T
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 228 LTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLA 262
              H++ + Q+  SP + T+LAS   D    VW L+
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 102/248 (41%), Gaps = 46/248 (18%)
Query: 186 MQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVATGY-------CVKTLTGHREWVRQ 237
           ++GH     G+++  N S  +LSAS D T+ +W++  G             TGH   V  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 238 IKVSP-DGTLLASCSNDHTARVWSLATKETKAE---LRGHDHTVECVAWAPGVASESISE 293
           +       +L  S ++D    +W   +  T      +  H   V C+++ P   SE I  
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP--YSEFI-- 290
Query: 294 AAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL-LFTLIGHDNWVRGVTFHPGGK-YLVS 351
                        LATGS DKT+ LWD+ +  L L T   H + +  V + P  +  L S
Sbjct: 291 -------------LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 352 CGDDKTLRVWDTANKRNMKTLE--------------AHSHFVTSLDFHRAHPYVVTG-SV 396
            G D+ L VWD +     ++ E               H+  ++   ++   P+V+   S 
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 397
Query: 397 DKTVKVWE 404
           D   ++W+
Sbjct: 398 DNIXQIWQ 405

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 16/115 (13%)
Query: 306 YLATGSRDKTIKLWDVGSGS---------LLFTLIGHDNWVRGVTFHPGGKYLV-SCGDD 355
           +L + S D T+ LWD+ +G           +FT  GH   V  V +H   + L  S  DD
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVEDVAWHLLHESLFGSVADD 251
Query: 356 KTLRVWDTANKRNMKT---LEAHSHFVTSLDFHRAHPYVV-TGSVDKTVKVWECR 406
           + L +WDT +    K    ++AH+  V  L F+    +++ TGS DKTV +W+ R
Sbjct: 252 QKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 121 MASCSEDATIRLWDYETGEYERAL-------HGHLDSVQDIAFD-QSGKLLVSCSADMSL 172
           + S S+D T+ LWD   G  E  +        GH   V+D+A+      L  S + D  L
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 173 KLWDM---STYQCLKTMQGHDHNVTGVAFLPNSDFVL-SASRDKTIKMWEVAT-GYCVKT 227
            +WD    +T +    +  H   V  ++F P S+F+L + S DKT+ +W++      + T
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 228 LTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLA 262
              H++ + Q+  SP + T+LAS   D    VW L+
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 46/248 (18%)
Query: 186 MQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVATGY-------CVKTLTGHREWVRQ 237
           ++GH     G+++  N S  +LSAS D T+ +W++  G             TGH   V  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 238 IKVSP-DGTLLASCSNDHTARVWSLATKETKAE---LRGHDHTVECVAWAPGVASESISE 293
           +       +L  S ++D    +W   +  T      +  H   V C+++ P   SE I  
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNP--YSEFI-- 290
Query: 294 AAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSL-LFTLIGHDNWVRGVTFHPGGK-YLVS 351
                        LATGS DKT+ LWD+ +  L L T   H + +  V + P  +  L S
Sbjct: 291 -------------LATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 352 CGDDKTLRVWDTANKRNMKTLE--------------AHSHFVTSLDFHRAHPYVVTG-SV 396
            G D+ L VWD +     ++ E               H+  ++   ++   P+V+   S 
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 397
Query: 397 DKTVKVWE 404
           D  +++W+
Sbjct: 398 DNIMQIWQ 405

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 16/115 (13%)
Query: 306 YLATGSRDKTIKLWDVGSGS---------LLFTLIGHDNWVRGVTFHPGGKYLV-SCGDD 355
           +L + S D T+ LWD+ +G           +FT  GH   V  V +H   + L  S  DD
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVEDVAWHLLHESLFGSVADD 251
Query: 356 KTLRVWDTANKRNMKT---LEAHSHFVTSLDFHRAHPYVV-TGSVDKTVKVWECR 406
           + L +WDT +    K    ++AH+  V  L F+    +++ TGS DKTV +W+ R
Sbjct: 252 QKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 306

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 51/242 (21%)
Query: 160 GKLLVSCSADMSLKLWDM------STYQCLKTMQ-GHDH------NVTGVAFLP-NSDFV 205
           G+ ++S  +D  + L+D+      S Y C      G DH      +V  V + P ++   
Sbjct: 56  GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115
Query: 206 LSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT---LLASCSNDHTARVWSLA 262
            S+S DKT+K+W+  T           E V    +SP  T   L+A  +     ++  L 
Sbjct: 116 TSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174
Query: 263 TKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVG 322
           +      L+GH   +  V+W+P                      LAT S D  +KLWDV 
Sbjct: 175 SGSCSHILQGHRQEILAVSWSP-----------------RYDYILATASADSRVKLWDVR 217
Query: 323 SGS-LLFTL---------------IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK 366
             S  L TL                 H+  V G+ F   G +L++ G D  +R+W+++N 
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 367 RN 368
            N
Sbjct: 278 EN 279

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 26/218 (11%)
Query: 193 VTGVAFLPNSDFVLSASRDKTIKMWEV--ATGYCVKTLTG--HREWVRQIKVSPDGTLLA 248
           VT VA++     +L AS    +++WE+       V       H + V+ + V  DGT   
Sbjct: 97  VTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAV 155
Query: 249 SCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLA 308
           S   D + +VW L+ K        H   V CVA  PG                    +L+
Sbjct: 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG----------------KDTIFLS 199
Query: 309 TGSRDKTIKLWDV--GSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK-TLRVWDTAN 365
            G  D  I LWD      +        D     VT+HP      +CGD+   + + +  N
Sbjct: 200 CG-EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN 258
Query: 366 KRNMKTLEAHSHFVTSLDF-HRAHPYVVTGSVDKTVKV 402
             + +T   HS  +T L + + + P++ + S D TV V
Sbjct: 259 PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAV 296

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 108/263 (41%), Gaps = 29/263 (11%)
Query: 151 VQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR 210
           V  + +   G  L     +  + ++D+ +   L+TM GH   V  +++  N   + S SR
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR 194
Query: 211 DKTIKMWEV-ATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAE 269
              I   +V    + + TL GH   V  +    DG  LAS  ND+  ++W   +   K  
Sbjct: 195 SGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT 254
Query: 270 LRGHDHTVECVAWAPGVASESISEAAXXXXXXXXXXYLAT--GSRDKTIKLWDVGSGSLL 327
              H+  V+ VAW P  ++                  LAT  G+ DK I  W+  +G+ +
Sbjct: 255 KTNHNAAVKAVAWCPWQSN-----------------LLATGGGTMDKQIHFWNAATGARV 297
Query: 328 FTLIGHDNWVRGVTFHPGGKYLVSCG--DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFH 385
            T +   + V  + + P  K ++S     D  L +W  ++    K ++  +H    L + 
Sbjct: 298 NT-VDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL-YS 355
Query: 386 RAHP---YVVTGSVDKTVKVWEC 405
              P    + T + D+ +K W  
Sbjct: 356 ALSPDGRILSTAASDENLKFWRV 378

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 307 LATGSRDKTIKLWDVGSGSLLF-------TLIGHDNWVRGVTFHPGGK-YLVSCGDDKTL 358
           +A+GS D T+ +W++  G L+        TL GH   V  V +HP  +  L+S G D  +
Sbjct: 97  IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 359 RVWDTANKRNMKTL--EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
            VWD      + TL  + H   + S+D+ R    + T   DK V+V E R
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 307 LATGSRDKTIKLWDVGSGSLLF-------TLIGHDNWVRGVTFHPGGK-YLVSCGDDKTL 358
           +A+GS D T+ +W++  G L+        TL GH   V  V +HP  +  L+S G D  +
Sbjct: 97  IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 359 RVWDTANKRNMKTL--EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
            VWD      + TL  + H   + S+D+ R    + T   DK V+V E R
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 22/215 (10%)
Query: 171 SLKLWDMSTYQCLKTMQ----GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVK 226
           +++LW++   + L   +     HD  V+ V+ L +    +S S+D  IK+W++A    + 
Sbjct: 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS 163
Query: 227 TLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPG 285
           +   H   V  +  SP   ++  SCS D+   +W     +  +++            APG
Sbjct: 164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS---------APG 214
Query: 286 VASESISEAAXXXXXXXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPG 345
               S++                 G  + T+ L D  S S + +   H   V G+ F P 
Sbjct: 215 YLPTSLA------WHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPH 268
Query: 346 G-KYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFV 379
              +L S  +D +L V D++     ++ +AH  FV
Sbjct: 269 SVPFLASLSEDCSLAVLDSSLSELFRS-QAHRDFV 302

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 109/278 (39%), Gaps = 16/278 (5%)
Query: 130 IRLWDYE-TGE-YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ 187
           +R W+ + +G+   +A   H   V D+ +   G  + + S D + K+WD+S+ Q ++  Q
Sbjct: 66  VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ 125
Query: 188 GHDHNVTGVAFL--PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT 245
            HD  V  + ++  PN   V++ S DKT+K W+  +   +  L           + P   
Sbjct: 126 -HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV 184
Query: 246 LLASCSNDHTARVWSLATKETKAELRGHD----HTVECVAWAPGVASESISEAAXXXXXX 301
           +  +   +    V+ L  + +  E R  +    H   CVA      ++    A       
Sbjct: 185 VATA---ERGLIVYQLENQPS--EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR 239
Query: 302 XXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNW-VRGVTFHPGGKYLVSCGDDKTLRV 360
               Y+   +  K    +     +   T    D + V G+ FHP    L + G D     
Sbjct: 240 VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 299
Query: 361 WDTANKRNMKTLEAHSHFVTSLDF-HRAHPYVVTGSVD 397
           WD   +  +KT E     +++  F H  + +    S D
Sbjct: 300 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 142 RALHGHLDSVQDIAF---------DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
           R L  ++D+  D  F         + S  LL    +   +++ +  T QC+K   GH + 
Sbjct: 94  RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA 153
Query: 193 VTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPDGTLLA 248
           +  + F P + + +LS S+D  +++W + T   V       GHR+ V        G  + 
Sbjct: 154 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 213
Query: 249 SCSNDHTARVWSLATKETKAELR 271
           SC  DH+ ++W + +K     ++
Sbjct: 214 SCGMDHSLKLWRINSKRMMNAIK 236

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 142 RALHGHLDSVQDIAF---------DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
           R L  ++D+  D  F         + S  LL    +   +++ +  T QC+K   GH + 
Sbjct: 53  RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA 112
Query: 193 VTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPDGTLLA 248
           +  + F P + + +LS S+D  +++W + T   V       GHR+ V        G  + 
Sbjct: 113 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 172
Query: 249 SCSNDHTARVWSLATKETKAELR 271
           SC  DH+ ++W + +K     ++
Sbjct: 173 SCGMDHSLKLWRINSKRMMNAIK 195

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/329 (20%), Positives = 128/329 (38%), Gaps = 27/329 (8%)
Query: 105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLL 163
           H   V  + + P  + +AS S D TI++W+  T + E+ +  G     Q +    + + L
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY 223
           VS SA+  +   +       +   GH+  +T ++   +   + SA  +  I  W+++TG 
Sbjct: 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357
Query: 224 CVKTLTG-HREWVRQIKVSPDGTLLASCSNDHTARV----------WSLATKETKAEL-- 270
             +     H   +  IK +  G L     +DH   V           ++A K +   L  
Sbjct: 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417
Query: 271 ----RGHDHTVEC----VAWAPGVASE-SISEAAXXXXXXXXXXYLATGSRDKTIKLWDV 321
                G      C      ++ G  +E  IS  +          ++A G +D  + ++ +
Sbjct: 418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKL 477
Query: 322 GSGSLL-FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA---HSH 377
              S+     I H   +  V F   G +LV+    + +  +  AN   +    +   H+ 
Sbjct: 478 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 537
Query: 378 FVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
            V  + +   +  + TGS+D +V VW   
Sbjct: 538 KVACVSWSPDNVRLATGSLDNSVIVWNMN 566

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 142 RALHGHLDSVQDIAF---------DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
           R L  ++D+  D  F         + S  LL    +   +++ +  T QC+K   GH + 
Sbjct: 58  RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA 117
Query: 193 VTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPDGTLLA 248
           +  + F P + + +LS S+D  +++W + T   V       GHR+ V        G  + 
Sbjct: 118 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 177
Query: 249 SCSNDHTARVWSLATKETKAELR 271
           SC  DH+ ++W + +K     ++
Sbjct: 178 SCGMDHSLKLWRINSKRMMNAIK 200

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 142 RALHGHLDSVQDIAF---------DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
           R L  ++D+  D  F         + S  LL    +   +++ +  T QC+K   GH + 
Sbjct: 57  RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA 116
Query: 193 VTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPDGTLLA 248
           +  + F P + + +LS S+D  +++W + T   V       GHR+ V        G  + 
Sbjct: 117 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 176
Query: 249 SCSNDHTARVWSLATKETKAELR 271
           SC  DH+ ++W + +K     ++
Sbjct: 177 SCGMDHSLKLWRINSKRMMNAIK 199

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 142 RALHGHLDSVQDIAF---------DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
           R L  ++D+  D  F         + S  LL    +   +++ +  T QC+K   GH + 
Sbjct: 57  RLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA 116
Query: 193 VTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPDGTLLA 248
           +  + F P + + +LS S+D  +++W + T   V       GHR+ V        G  + 
Sbjct: 117 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIM 176
Query: 249 SCSNDHTARVWSLATKETKAELR 271
           SC  DH+ ++W + +K     ++
Sbjct: 177 SCGMDHSLKLWRINSKRMMNAIK 199

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 100/226 (44%), Gaps = 26/226 (11%)
Query: 191 HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASC 250
           + VT +A+  + + +++   +  +++W   TG  +  L  HR  +  +K + DGT + S 
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 251 SNDHTARVWSLAT---------KETK-AELRGHDHTVECVAWAPGVASESISEAAXXXXX 300
             ++   +W++ +         KET  + +   +H+ +    + GV  E + +       
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG---SLGVDVEWVDD------- 217
Query: 301 XXXXXYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRV 360
                ++  G +   I ++ +   +    LIGH   +  + F+   K L+S  DD TLR+
Sbjct: 218 ---DKFVIPGPK-GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273
Query: 361 WDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           W   N  +      HS  + S  +      V++ S+D +V++W  +
Sbjct: 274 WHGGNGNSQNCFYGHSQSIVSASW-VGDDKVISCSMDGSVRLWSLK 318

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 18/159 (11%)
Query: 120 LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQS---GKLLVSCSADMSLKLWD 176
            + +   D  I  +D ++GE+ + +    + VQ   F  S    +   +  AD ++++WD
Sbjct: 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD 280
Query: 177 MSTYQCLKT----MQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR 232
           ++T +C++      Q   +   GV    N   ++S S D T+  +E+     +KT++GH 
Sbjct: 281 VTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYELGHDEVLKTISGHN 339
Query: 233 EWVRQIKVSP------DGTLL----ASCSNDHTARVWSL 261
           + +  + V+P      DG ++    +S   DH+  + SL
Sbjct: 340 KGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSL 378

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 120 LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQS---GKLLVSCSADMSLKLWD 176
            + +   D  I  +D ++GE+ + +    + VQ   F  S    +   +  AD ++++WD
Sbjct: 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD 280
Query: 177 MSTYQCLKT----MQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR 232
           ++T +C++      Q   +   GV    N   ++S S D T+  +E+     +KT++GH 
Sbjct: 281 VTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYELGHDEVLKTISGHN 339
Query: 233 EWVRQIKVSP 242
           + +  + V+P
Sbjct: 340 KGITALTVNP 349

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 146 GHLDSVQDIAFDQSGKLLVSCSADMSLKLW----DMSTYQCLKTMQGHDHNVTGV--AFL 199
           GH D V D+ +D  G+ + +CS+D  +K++    D S ++   + + HD ++  +  A  
Sbjct: 9   GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 200 PNSDFVLSASRDKTIKMWEVATGY--C-------VKTLTGHREWVRQIKVSPD--GTLLA 248
                + SAS DKT+K+WE       C       + TL   +  +  +K +P   G  LA
Sbjct: 69  EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128
Query: 249 SCSNDHTARV-----------WSLATKETKAELRGHDHTVE--CVAWAP 284
              ND   R+           W+L ++     +   +H     C++W P
Sbjct: 129 CLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCP 177

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVW----DTANKRNMKTLEAHSHFVTSLDFHRA 387
           GHD+ V  V +   G+++ +C  D+ ++V+    DT+N     +  AH   + ++D+  A
Sbjct: 9   GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW--A 66
Query: 388 HP----YVVTGSVDKTVKVWE 404
            P     + + S DKTVK+WE
Sbjct: 67  SPEYGRIIASASYDKTVKLWE 87

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 146 GHLDSVQDIAFDQSGKLLVSCSADMSLKLW----DMSTYQCLKTMQGHDHNVTGV--AFL 199
           GH D V D+ +D  G+ + +CS+D  +K++    D S ++   + + HD ++  +  A  
Sbjct: 9   GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 200 PNSDFVLSASRDKTIKMWEVATGY--C-------VKTLTGHREWVRQIKVSPD--GTLLA 248
                + SAS DKT+K+WE       C       + TL   +  +  +K +P   G  LA
Sbjct: 69  EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128
Query: 249 SCSNDHTARV-----------WSLATKETKAELRGHDHTVE--CVAWAP 284
              ND   R+           W+L ++     +   +H     C++W P
Sbjct: 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP 177

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVW----DTANKRNMKTLEAHSHFVTSLDFHRA 387
           GHD+ V  V +   G+++ +C  D+ ++V+    DT+N     +  AH   + ++D+  A
Sbjct: 9   GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW--A 66
Query: 388 HP----YVVTGSVDKTVKVWE 404
            P     + + S DKTVK+WE
Sbjct: 67  SPEYGRIIASASYDKTVKLWE 87

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 146 GHLDSVQDIAFDQSGKLLVSCSADMSLKLW----DMSTYQCLKTMQGHDHNVTGV--AFL 199
           GH D V D+ +D  G+ + +CS+D  +K++    D S ++   + + HD ++  +  A  
Sbjct: 7   GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 200 PNSDFVLSASRDKTIKMWEVATGY--C-------VKTLTGHREWVRQIKVSPD--GTLLA 248
                + SAS DKT+K+WE       C       + TL   +  +  +K +P   G  LA
Sbjct: 67  EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 126
Query: 249 SCSNDHTARV-----------WSLATKETKAELRGHDHTVE--CVAWAP 284
              ND   R+           W+L ++     +   +H     C++W P
Sbjct: 127 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP 175

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVW----DTANKRNMKTLEAHSHFVTSLDFHRA 387
           GHD+ V  V +   G+++ +C  D+ ++V+    DT+N     +  AH   + ++D+  A
Sbjct: 7   GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW--A 64
Query: 388 HP----YVVTGSVDKTVKVWE 404
            P     + + S DKTVK+WE
Sbjct: 65  SPEYGRIIASASYDKTVKLWE 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	406
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.98
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.92
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.89
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.89
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.88
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.88
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.87
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.87
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.86
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.86
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	99.86
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.84
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.83
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.82
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.82
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.81
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.79
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.79
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.78
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.76
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.75
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.75
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.74
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.72
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.72
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.72
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.71
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.67
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.66
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.66
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.61
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.61
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.6
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.6
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.6
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.59
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.59
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.58
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.55
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.55
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.54
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.53
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.51
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.49
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.46
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.45
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.44
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.43
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.42
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.4
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.4
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.37
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.37
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.35
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.34
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.27
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.26
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.19
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.18
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.17
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.16
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.11
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.07
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.07
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.05
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.05
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.04
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.04
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.02
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.97
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.96
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.95
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.94
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.93
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.92
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.9
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.89
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.88
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.87
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.87
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.87
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.86
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.85
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.82
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.8
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.79
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.77
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.77
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.72
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.72
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.71
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.7
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.7
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.64
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.63
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.62
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.55
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.5
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.48
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.48
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.47
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.47
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.45
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.44
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.42
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.38
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.33
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.27
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.2
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.16
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.12
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.1
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.09
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.07
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.07
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.03
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.02
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.98
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.97
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.94
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.92
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.83
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.62
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.6
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.54
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	97.49
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.44
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.43
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.36
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.33
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.29
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.15
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.09
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.03
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.01
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.98
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.97
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.97
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.92
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.87
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.64
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.63
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.62
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.52
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.51
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.43
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.42
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.26
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.23
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.2
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.17
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.12
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.07
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.94
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.87
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.74
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.74
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.54
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.46
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.37
3ott_A	758	Two-component system sensor histidine kinase; beta	95.18
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.03
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.99
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.98
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.66
3ott_A	758	Two-component system sensor histidine kinase; beta	94.16
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.16
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.51
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	91.41
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	90.7
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	87.68
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.76
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.07
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.23
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.71

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1e-74  Score=550.47  Aligned_cols=406  Identities=70%  Similarity=1.198  Sum_probs=293.6

Q ss_pred             CCCChhhHHHHHHHHHHHHHhcChHHHHHHHHhhcCCC--hhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy226            1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLP--AEVEKKYSGLLEKKWTSVIRLQKKVIELESKLSEAEKEYV   78 (406)
Q Consensus         1 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   78 (406)
                      |+||+||++||+++|++||+++++.+++++|+.|..++  .+..+.+.++++++|.+++++|+++++++.++.+...++.
T Consensus         1 ~~~~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~~~~~   80 (410)
T 1vyh_C            1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEFT   80 (410)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchhhhhhchhhhhhhheeeHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999988654  3445678899999999999999999999988877766665


Q ss_pred             hCCCCCCCCCCCcCCCCCCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECC
Q psy226           79 EGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQ  158 (406)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~  158 (406)
                      ...+......+..|.|..+....+.+|.++|++++|+|++++|++|+.||+|+|||+.+++....+.+|.+.|.+++|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~  160 (410)
T 1vyh_C           81 SGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH  160 (410)
T ss_dssp             -----------CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT
T ss_pred             ccCCccccCCccccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC
Confidence            55454555567788898888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEE
Q psy226          159 SGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI  238 (406)
Q Consensus       159 ~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l  238 (406)
                      +|++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|..+|.++
T Consensus       161 ~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~  240 (410)
T 1vyh_C          161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV  240 (410)
T ss_dssp             TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCC--CCCCCCCEEEEEeCCCcE
Q psy226          239 KVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP--PGQGGGPYLATGSRDKTI  316 (406)
Q Consensus       239 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~d~~i  316 (406)
                      .++|++.+|++|+.|++|++||+.+......+.+|...|.++.|+|......+.......  .....+.+|++|+.|+.|
T Consensus       241 ~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i  320 (410)
T 1vyh_C          241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI  320 (410)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence            999999999999999999999999999999999999999999999975433322211111  111247799999999999


Q ss_pred             EEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeC
Q psy226          317 KLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSV  396 (406)
Q Consensus       317 ~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~  396 (406)
                      ++||++++.++..+.+|..+|++++|+|+|++|++|+.||+|++||+.+++++.++.+|...|++++|+|++++|+|||.
T Consensus       321 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~  400 (410)
T 1vyh_C          321 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV  400 (410)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             EEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEeecC
Q psy226          397 DKTVKVWECR  406 (406)
Q Consensus       397 Dg~v~iw~~~  406 (406)
                      ||+|++|++|
T Consensus       401 D~~i~vW~~r  410 (410)
T 1vyh_C          401 DQTVKVWECR  410 (410)
T ss_dssp             TSEEEEEC--
T ss_pred             CCcEEEEeCC
Confidence            9999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.6e-54  Score=401.39  Aligned_cols=329  Identities=24%  Similarity=0.409  Sum_probs=287.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCC--CCCCCCCcCCCCCCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q psy226           56 VIRLQKKVIELESKLSEAEKEYVEGAPT--RAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLW  133 (406)
Q Consensus        56 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vw  133 (406)
                      ..+|+++..+|++++.+..+........  .....+.. .........+.||.++|++++|+|++++|++|+.||+|++|
T Consensus         4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iW   82 (340)
T 1got_B            4 LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVG-RIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIW   82 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCCCC-CCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCCCccc-cccchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence            3456777777777766555443211100  00000000 01223456799999999999999999999999999999999


Q ss_pred             EcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC----eEEEEEecCCcceEEEEEecCCCEEEEEe
Q psy226          134 DYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY----QCLKTMQGHDHNVTGVAFLPNSDFVLSAS  209 (406)
Q Consensus       134 d~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~s  209 (406)
                      |..+++....+..|...|.+++|+|+|++|++|+.|+.|++||+.+.    .....+.+|...|.++.|+|++. +++++
T Consensus        83 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s  161 (340)
T 1got_B           83 DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSS  161 (340)
T ss_dssp             ETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEE
T ss_pred             ECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEE
Confidence            99999999999999999999999999999999999999999999764    45677889999999999998764 88999


Q ss_pred             CCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCcc
Q psy226          210 RDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASE  289 (406)
Q Consensus       210 ~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  289 (406)
                      .|++|++||+.++.++..+.+|...|.+++|+|++.++++|+.|++|++||++++.....+.+|...|.+++|+|     
T Consensus       162 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-----  236 (340)
T 1got_B          162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-----  236 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-----
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-----
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998     


Q ss_pred             ccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC--CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy226          290 SISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG--HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR  367 (406)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~--h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~  367 (406)
                                   ++.+|++|+.|++|++||+++++.+..+..  +...|++++|+|+|++|++|+.|+.|++||+.+++
T Consensus       237 -------------~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  303 (340)
T 1got_B          237 -------------NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             -------------TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             -------------CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence                         477899999999999999999988877653  33579999999999999999999999999999999


Q ss_pred             cceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          368 NMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       368 ~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      .+..+.+|...|.+++|+|++.+|||||.||+|++||
T Consensus       304 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999999999999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.9e-54  Score=395.45  Aligned_cols=288  Identities=24%  Similarity=0.450  Sum_probs=272.4

Q ss_pred             EeccCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCcE--EEEecccccCeeeEEECCCCCEEEEEeCCCcEEE
Q psy226          101 ALSGHRSPVIKVIFHPV----FSLMASCSEDATIRLWDYETGEY--ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKL  174 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~----~~~latgs~dg~v~vwd~~~~~~--~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~v  174 (406)
                      .+.+|.++|++++|+|+    +.+|+||+.|++|+|||+.+++.  ...+.+|...|.+++|++++.++++|+.|++|++
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l  106 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL  106 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence            45689999999999985    57999999999999999988764  4468899999999999999999999999999999


Q ss_pred             EeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          175 WDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       175 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      ||+.+++++..+..|...+.+++|+|++++|++|+.|+.|++||+.++.....+..|...|.+++|+|+|++|++|+.|+
T Consensus       107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg  186 (321)
T 3ow8_A          107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG  186 (321)
T ss_dssp             EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD  334 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~  334 (406)
                      .|++||+++++.+..+.+|..+|.+++|+|                  ++.+|++|+.|+.|++||++++.++..+.+|.
T Consensus       187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp------------------d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~  248 (321)
T 3ow8_A          187 IINIFDIATGKLLHTLEGHAMPIRSLTFSP------------------DSQLLVTASDDGYIKIYDVQHANLAGTLSGHA  248 (321)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCCCEEEECT------------------TSCEEEEECTTSCEEEEETTTCCEEEEECCCS
T ss_pred             eEEEEECCCCcEEEEEcccCCceeEEEEcC------------------CCCEEEEEcCCCeEEEEECCCcceeEEEcCCC
Confidence            999999999999999999999999999998                  46799999999999999999999999999999


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ..|.+++|+|++++|++|+.|++|++||+.+++++.++..|...|.+++|+|++.+|++++.||+|++||+.
T Consensus       249 ~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          249 SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999984

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-52  Score=390.60  Aligned_cols=289  Identities=24%  Similarity=0.368  Sum_probs=269.4

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      ....+.||.++|++++|+|++++||||+.||+|+|||..+++....+..|...|.+++|+|+|.+|++|+.|+.+++|++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            45678999999999999999999999999999999999999998899999999999999999999999999999999998


Q ss_pred             CCC------eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC--CCCEEEE
Q psy226          178 STY------QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP--DGTLLAS  249 (406)
Q Consensus       178 ~~~------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~~~l~s  249 (406)
                      ...      .....+.+|...|.+++|+|++..|++++.|++|++||+.++.++..+.+|...|.+++++|  +|++|++
T Consensus       136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s  215 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS  215 (354)
T ss_dssp             CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred             eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence            532      23566778999999999999999999999999999999999999999999999999999987  5789999


Q ss_pred             EeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q psy226          250 CSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFT  329 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~  329 (406)
                      |+.|++|++||+++++....+.+|...|.+++|+|                  ++.+|++|+.|++|++||++.++.+..
T Consensus       216 gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p------------------~~~~l~s~s~D~~v~lwd~~~~~~~~~  277 (354)
T 2pbi_B          216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP------------------SGDAFASGSDDATCRLYDLRADREVAI  277 (354)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT------------------TSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC------------------CCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            99999999999999999999999999999999998                  467899999999999999999988777


Q ss_pred             EeCC--CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          330 LIGH--DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       330 ~~~h--~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      +..+  ...+.+++|+|+|++|++|+.|++|++||+.+++.+..+.+|...|++++|+|++++|++|+.||+|++|+
T Consensus       278 ~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          278 YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            6544  34789999999999999999999999999999999999999999999999999999999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=8.8e-53  Score=383.55  Aligned_cols=291  Identities=27%  Similarity=0.423  Sum_probs=267.4

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      ...++.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|..+|.+++|+|++++|++|+.|++|++||+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC-eEEEEeecCCccEEEEEECC-CCCEEEEEeCCCe
Q psy226          178 STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHT  255 (406)
Q Consensus       178 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~  255 (406)
                      .+++++..+.+|...|.+++|+|++.+|++|+.|++|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|++
T Consensus        85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            999999999999999999999999999999999999999999887 55677899999999999999 6789999999999


Q ss_pred             EEEEeCCCccceeEEe-cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy226          256 ARVWSLATKETKAELR-GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD  334 (406)
Q Consensus       256 v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~  334 (406)
                      |++||++.......+. +|...+..+.|.|.                +++.+|++|+.|++|++||+++++++..+.+|.
T Consensus       165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~----------------~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~  228 (304)
T 2ynn_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPL----------------PDKPYMITASDDLTIKIWDYQTKSCVATLEGHM  228 (304)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCEEEEEECCS----------------TTCCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEEEECCCCCccceeccCCcCcEEEEEEEEc----------------CCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC
Confidence            9999998776655554 56688999999873                246799999999999999999999999999999


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCC--EEEEeeCCCeEEEeec
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP--YVVTGSVDKTVKVWEC  405 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~--~l~sgs~Dg~v~iw~~  405 (406)
                      ..|.+++|+|++++|++|+.||+|++||..+++.++++..|...+.+++|+|++.  ++|+|+.|| +.+|++
T Consensus       229 ~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~  300 (304)
T 2ynn_A          229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL  300 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence            9999999999999999999999999999999999999999999999999999885  688887665 556654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.6e-53  Score=397.01  Aligned_cols=291  Identities=25%  Similarity=0.436  Sum_probs=265.2

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      ....+.||.++|++++|+|++++|+||+.||+|+|||..+++....+.+|...|.+++|+|+|++|++|+.|+.|++||+
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC-------eEEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCeEEEEe-----ecCCccEEEEEECC-C
Q psy226          178 STY-------QCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGYCVKTL-----TGHREWVRQIKVSP-D  243 (406)
Q Consensus       178 ~~~-------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~~~-~  243 (406)
                      .+.       .....+.+|...|.++.|+|++ ..|++|+.|++|++||+.++.++..+     .+|...|.+++++| +
T Consensus       138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  217 (380)
T 3iz6_a          138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN  217 (380)
T ss_dssp             CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred             CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence            642       2345678999999999999975 57999999999999999999988877     67999999999987 8


Q ss_pred             CCEEEEEeCCCeEEEEeCC-CccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC
Q psy226          244 GTLLASCSNDHTARVWSLA-TKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG  322 (406)
Q Consensus       244 ~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~  322 (406)
                      +++|++|+.|++|++||++ .......+.+|...|.+++|+|                  ++.+|++|+.|++|++||++
T Consensus       218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p------------------~~~~l~s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP------------------DGQRFGTGSDDGTCRLFDMR  279 (380)
T ss_dssp             CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT------------------TSSEEEEECSSSCEEEEETT
T ss_pred             CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec------------------CCCeEEEEcCCCeEEEEECC
Confidence            8999999999999999998 4567788999999999999998                  47799999999999999999


Q ss_pred             CCeEEEEEeCCC-------cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee----ccccceEEEEEEeCCCCEE
Q psy226          323 SGSLLFTLIGHD-------NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL----EAHSHFVTSLDFHRAHPYV  391 (406)
Q Consensus       323 ~~~~~~~~~~h~-------~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l----~~h~~~v~~l~~~~~~~~l  391 (406)
                      ++..+..+..+.       ..|++++|+|+|++|++|+.||.|++||..+++.+..+    .+|.+.|++++|+|++.+|
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  359 (380)
T 3iz6_a          280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL  359 (380)
T ss_dssp             TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEE
T ss_pred             CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEE
Confidence            999988876543       24899999999999999999999999999988877766    6799999999999999999


Q ss_pred             EEeeCCCeEEEeecC
Q psy226          392 VTGSVDKTVKVWECR  406 (406)
Q Consensus       392 ~sgs~Dg~v~iw~~~  406 (406)
                      +|||.||+|++|++.
T Consensus       360 ~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          360 CTGSWDKNLKIWAFS  374 (380)
T ss_dssp             EEECTTSCEEEEECC
T ss_pred             EEeeCCCCEEEEecC
Confidence            999999999999963

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.1e-50  Score=368.90  Aligned_cols=295  Identities=34%  Similarity=0.630  Sum_probs=272.1

Q ss_pred             CCCCCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcE
Q psy226           93 IPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSL  172 (406)
Q Consensus        93 ~~~~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i  172 (406)
                      .|.......+.+|..+|++++|+|++++|++|+.||.|++||..+++....+.+|...|.+++|+|++++|++|+.|+.|
T Consensus        10 ~~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   89 (312)
T 4ery_A           10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL   89 (312)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence            34455677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC
Q psy226          173 KLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN  252 (406)
Q Consensus       173 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~  252 (406)
                      ++||+.+++++..+.+|...|.+++|+|++++|++|+.|++|++||++++.++..+..|...|.+++|+|++++|++|+.
T Consensus        90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
T 4ery_A           90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  169 (312)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCccceeEEe-cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q psy226          253 DHTARVWSLATKETKAELR-GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI  331 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~  331 (406)
                      |+.|++||+++.+....+. .+...+..++|+|                  ++.++++++.|+.|++||+++++++..+.
T Consensus       170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  231 (312)
T 4ery_A          170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP------------------NGKYILAATLDNTLKLWDYSKGKCLKTYT  231 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCSSCCCEEEEEECT------------------TSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred             CCcEEEEECCCCceeeEEeccCCCceEEEEECC------------------CCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence            9999999999887766554 4567899999998                  47799999999999999999999999999


Q ss_pred             CCCcCEE---EEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEee--CCCeEEEeec
Q psy226          332 GHDNWVR---GVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGS--VDKTVKVWEC  405 (406)
Q Consensus       332 ~h~~~v~---~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs--~Dg~v~iw~~  405 (406)
                      +|...+.   .....+++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++  .|++|++|+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            8876432   223346789999999999999999999999999999999999999999999999987  6999999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.5e-51  Score=381.37  Aligned_cols=284  Identities=21%  Similarity=0.314  Sum_probs=244.0

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-----------cEEEEecccccCeeeEEECCCCCEEEEEeCCCc
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG-----------EYERALHGHLDSVQDIAFDQSGKLLVSCSADMS  171 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~-----------~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~  171 (406)
                      ..|...|.+++|+|+|.+|++++ |+++++||....           ........|...|.+++|+|++ .|++|+.||+
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~  104 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA  104 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence            35778899999999999999888 778888873211           1111122356789999999985 6889999999


Q ss_pred             EEEEeCCCCeEEE----EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCC-CE
Q psy226          172 LKLWDMSTYQCLK----TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG-TL  246 (406)
Q Consensus       172 i~vwd~~~~~~~~----~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~  246 (406)
                      |+|||+.+++.+.    .+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|.+++|+|++ .+
T Consensus       105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV  184 (344)
T ss_dssp             EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred             EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence            9999998876543    345899999999999999999999999999999999999999999999999999999988 47


Q ss_pred             EEEEeCCCeEEEEeCCCccceeEEe--cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q psy226          247 LASCSNDHTARVWSLATKETKAELR--GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG  324 (406)
Q Consensus       247 l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~  324 (406)
                      |++|+.|++|++||+++++....+.  .|...+.+++|+|.                 ++.++++|+.|+.|++||++++
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~-----------------~~~~l~sg~~dg~v~~wd~~~~  247 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ-----------------QSEVFVFGDENGTVSLVDTKST  247 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS-----------------CTTEEEEEETTSEEEEEESCC-
T ss_pred             eeeeccccccccccccccceeeeeecceeeccceeeeecCC-----------------CCcceEEeccCCcEEEEECCCC
Confidence            8999999999999999988877664  45567899999884                 4678999999999999999999


Q ss_pred             eEEEEEeCCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCC-EEEEeeCCCeEEE
Q psy226          325 SLLFTLIGHDNWVRGVTFHPGG-KYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP-YVVTGSVDKTVKV  402 (406)
Q Consensus       325 ~~~~~~~~h~~~v~~l~~s~~g-~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~-~l~sgs~Dg~v~i  402 (406)
                      +++..+.+|...|++++|+|+| ++|++||.|++|+|||+.+++.+ .+.+|.+.|++|+|+|+++ +|+|||.||+|++
T Consensus       248 ~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~  326 (344)
T 4gqb_B          248 SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH  326 (344)
T ss_dssp             -CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence            9999999999999999999998 57999999999999999988765 5788999999999999986 6789999999999


Q ss_pred             eecC
Q psy226          403 WECR  406 (406)
Q Consensus       403 w~~~  406 (406)
                      |++.
T Consensus       327 w~v~  330 (344)
T 4gqb_B          327 HVVP  330 (344)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9863

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.4e-50  Score=368.99  Aligned_cols=285  Identities=28%  Similarity=0.532  Sum_probs=258.8

Q ss_pred             EEeccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCC-----cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEE
Q psy226          100 FALSGHRSPVIKVIFHPVF-SLMASCSEDATIRLWDYETG-----EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK  173 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~-~~latgs~dg~v~vwd~~~~-----~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~  173 (406)
                      ..|.||.++|++++|+|++ ++|+||+.|++|++||+.+.     .....+.+|...|.+++|+|+|++|++|+.|++|+
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~   90 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR   90 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence            4688999999999999975 89999999999999998642     34567889999999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCC------CCEE
Q psy226          174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD------GTLL  247 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~------~~~l  247 (406)
                      +||+.+++++..+.+|...|.+++|+|++.+|++|+.|++|++||++ +.++..+.+|...|.++.+.|.      +..+
T Consensus        91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l  169 (319)
T 3frx_A           91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTI  169 (319)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEE
T ss_pred             EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEE
Confidence            99999999999999999999999999999999999999999999996 5678889999999999999985      4589


Q ss_pred             EEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEE
Q psy226          248 ASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLL  327 (406)
Q Consensus       248 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~  327 (406)
                      ++++.|+.|++||+++......+.+|...|.+++|+|                  ++.+|++|+.|+.|++||+.+++++
T Consensus       170 ~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp------------------~g~~l~s~~~dg~i~iwd~~~~~~~  231 (319)
T 3frx_A          170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP------------------DGTLIASAGKDGEIMLWNLAAKKAM  231 (319)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT------------------TSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             EEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC------------------CCCEEEEEeCCCeEEEEECCCCcEE
Confidence            9999999999999999888888999999999999998                  4789999999999999999999999


Q ss_pred             EEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec--------cccceEEEEEEeCCCCEEEEeeCCCe
Q psy226          328 FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE--------AHSHFVTSLDFHRAHPYVVTGSVDKT  399 (406)
Q Consensus       328 ~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~--------~h~~~v~~l~~~~~~~~l~sgs~Dg~  399 (406)
                      ..+..+ ..|.+++|+|++.+|++++.+ .+++|++.....+..+.        .|...+.+++|+|++++|++|+.||.
T Consensus       232 ~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~  309 (319)
T 3frx_A          232 YTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV  309 (319)
T ss_dssp             EEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCce
Confidence            888765 579999999999999988865 59999998766555443        35667999999999999999999999


Q ss_pred             EEEeec
Q psy226          400 VKVWEC  405 (406)
Q Consensus       400 v~iw~~  405 (406)
                      |++||+
T Consensus       310 i~vWd~  315 (319)
T 3frx_A          310 IRVWQV  315 (319)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-50  Score=374.46  Aligned_cols=290  Identities=28%  Similarity=0.499  Sum_probs=254.9

Q ss_pred             eEEeccCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE---EecccccCeeeEEECCCCCEEEEEeCCCcEEE
Q psy226           99 KFALSGHRS-PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER---ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKL  174 (406)
Q Consensus        99 ~~~l~~h~~-~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~v  174 (406)
                      ...+.+|.. +|.+++|+|++++||+|+.|++|+|||+.++....   ...+|...|.+++|+|+|++|++|+.|++|++
T Consensus         8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i   87 (345)
T 3fm0_A            8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI   87 (345)
T ss_dssp             EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence            346789988 99999999999999999999999999999886432   23689999999999999999999999999999


Q ss_pred             EeCCCC--eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC---eEEEEeecCCccEEEEEECCCCCEEEE
Q psy226          175 WDMSTY--QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG---YCVKTLTGHREWVRQIKVSPDGTLLAS  249 (406)
Q Consensus       175 wd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s  249 (406)
                      ||+.+.  +++..+.+|...|.+++|+|++++|++|+.|++|++||+.++   .++..+.+|...|.+++|+|++.+|++
T Consensus        88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A           88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred             EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence            998765  567889999999999999999999999999999999999875   456778899999999999999999999


Q ss_pred             EeCCCeEEEEeCCCcc--ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC----
Q psy226          250 CSNDHTARVWSLATKE--TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS----  323 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~----  323 (406)
                      |+.|++|++||+....  ....+.+|...|.+++|+|                  ++.+|++|+.|++|++||...    
T Consensus       168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp------------------~g~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP------------------SGQRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT------------------TSSEEEEEETTSCEEEEEEECTTCT
T ss_pred             EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC------------------CCCEEEEEeCCCeEEEeccccCCCC
Confidence            9999999999998764  3467889999999999998                  478999999999999999632    


Q ss_pred             -----------CeEEEEEeC-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc---------ceeeccccceEEEE
Q psy226          324 -----------GSLLFTLIG-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN---------MKTLEAHSHFVTSL  382 (406)
Q Consensus       324 -----------~~~~~~~~~-h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~---------~~~l~~h~~~v~~l  382 (406)
                                 .+++..+.+ |...|.+++|+|++..|++++.|+.|++|+......         .....+|...|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  309 (345)
T 3fm0_A          230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV  309 (345)
T ss_dssp             TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred             ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence                       134556665 889999999999999999999999999999865421         12235789999999


Q ss_pred             EEeCCCC-EEEEeeCCCeEEEeecC
Q psy226          383 DFHRAHP-YVVTGSVDKTVKVWECR  406 (406)
Q Consensus       383 ~~~~~~~-~l~sgs~Dg~v~iw~~~  406 (406)
                      +|+|++. +|||||.||+|++|+.+
T Consensus       310 ~~~p~~~~~laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          310 AWNPKEPGLLASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEEEC
T ss_pred             EEeCCCceEEEEcCCCCcEEEEEec
Confidence            9999984 99999999999999963

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-50  Score=369.14  Aligned_cols=290  Identities=25%  Similarity=0.391  Sum_probs=244.9

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--cEEEEe-cc-cccCeeeEEECCCCCEEEEEeCCCcEE
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG--EYERAL-HG-HLDSVQDIAFDQSGKLLVSCSADMSLK  173 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~--~~~~~~-~~-h~~~V~~l~~~~~g~~l~sgs~d~~i~  173 (406)
                      ....+.+|.++|++++|+|+  +||+|+.|++|++||+.++  .....+ .+ |...|.+++|+|++++|++|+.|++|+
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            34568899999999999998  9999999999999999875  344555 44 999999999999999999999999999


Q ss_pred             EEeCC-------CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC----CeEEEEeecCCccEEEEEECC
Q psy226          174 LWDMS-------TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT----GYCVKTLTGHREWVRQIKVSP  242 (406)
Q Consensus       174 vwd~~-------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~----~~~~~~~~~~~~~v~~l~~~~  242 (406)
                      +||+.       +.+++..+.+|...|.+++|+|++++|++|+.|++|++||+..    ..++..+.+|...|.+++|+|
T Consensus        84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p  163 (330)
T 2hes_X           84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP  163 (330)
T ss_dssp             EEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS
T ss_pred             EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC
Confidence            99984       3456778899999999999999999999999999999999943    256788899999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCc--cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEE
Q psy226          243 DGTLLASCSNDHTARVWSLATK--ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWD  320 (406)
Q Consensus       243 ~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd  320 (406)
                      ++.+|++|+.|++|++||..+.  ..+..+.+|...|.++.|+|..                .+.+|++|+.|++|++||
T Consensus       164 ~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------------~~~~l~s~s~D~~v~iw~  227 (330)
T 2hes_X          164 SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE----------------GVFRLCSGSDDSTVRVWK  227 (330)
T ss_dssp             SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSS----------------SSCEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCC----------------CeeEEEEEeCCCeEEEEE
Confidence            9999999999999999998765  5677889999999999999841                256799999999999999


Q ss_pred             CCCC--------eEEEEEeC-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--cce-eeccccc-eEEEEEEeC-
Q psy226          321 VGSG--------SLLFTLIG-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR--NMK-TLEAHSH-FVTSLDFHR-  386 (406)
Q Consensus       321 ~~~~--------~~~~~~~~-h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~--~~~-~l~~h~~-~v~~l~~~~-  386 (406)
                      +..+        .+...+.+ |...|.+++|++++ +|++|+.||+|+|||..+++  ... .+.+|.. .|.+++|+| 
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~  306 (330)
T 2hes_X          228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLEL  306 (330)
T ss_dssp             EEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC--
T ss_pred             ecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecC
Confidence            8654        44555655 99999999999765 89999999999999987763  232 2356876 899999999 


Q ss_pred             -CCCEEEEeeCCCeEEEeecC
Q psy226          387 -AHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       387 -~~~~l~sgs~Dg~v~iw~~~  406 (406)
                       ++.+|||||.||+|++|++.
T Consensus       307 ~~~~~las~s~Dg~v~~W~~~  327 (330)
T 2hes_X          307 NGKTILATGGDDGIVNFWSLE  327 (330)
T ss_dssp             ---CCEEEEETTSEEEEEEC-
T ss_pred             CCceEEEEecCCCcEEEEEec
Confidence             68999999999999999973

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-49  Score=375.74  Aligned_cols=283  Identities=27%  Similarity=0.527  Sum_probs=256.9

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEeccccc------------------CeeeEEECCCCCEEEE
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLD------------------SVQDIAFDQSGKLLVS  165 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~------------------~V~~l~~~~~g~~l~s  165 (406)
                      +|.++|++++|+|++++||+|+ ++++++|++.+++....+..|..                  .|++++|+|+|++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            7999999999999999999987 78999999999998887766542                  3899999999999999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC-CC
Q psy226          166 CSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DG  244 (406)
Q Consensus       166 gs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~  244 (406)
                      |+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++.+...+. +...+.+++++| ++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~  219 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG  219 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence            9999999999999999999999999999999999999999999999999999999998887775 556799999999 89


Q ss_pred             CEEEEEeCCCeEEEEeCCCccceeEE-------ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEE
Q psy226          245 TLLASCSNDHTARVWSLATKETKAEL-------RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIK  317 (406)
Q Consensus       245 ~~l~s~~~d~~v~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  317 (406)
                      ++|++|+.|+.|++||++++.....+       .+|...|.+++|+|                  ++.+|++|+.|+.|+
T Consensus       220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~------------------~g~~l~s~s~d~~v~  281 (393)
T 1erj_A          220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR------------------DGQSVVSGSLDRSVK  281 (393)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT------------------TSSEEEEEETTSEEE
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC------------------CCCEEEEEeCCCEEE
Confidence            99999999999999999988776655       57899999999998                  477899999999999


Q ss_pred             EEECCC------------CeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEe
Q psy226          318 LWDVGS------------GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFH  385 (406)
Q Consensus       318 lwd~~~------------~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~  385 (406)
                      +||+++            +.+...+.+|...|.+++|+|++++|++|+.|+.|++||..+++.+..+.+|...|.+++|+
T Consensus       282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~  361 (393)
T 1erj_A          282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA  361 (393)
T ss_dssp             EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEec
Confidence            999875            34567788999999999999999999999999999999999999999999999999999988


Q ss_pred             C------CCCEEEEeeCCCeEEEeecC
Q psy226          386 R------AHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       386 ~------~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +      ++.+|||||.||+|++|+++
T Consensus       362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          362 NGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCcCcCCCCCEEEEECCCCcEEECccc
Confidence            6      68899999999999999963

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.2e-51  Score=379.29  Aligned_cols=285  Identities=19%  Similarity=0.303  Sum_probs=245.6

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEcCCCcEE----EEecccccCeeeEEECCCCCEEEEEeCCCcE
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSE------DATIRLWDYETGEYE----RALHGHLDSVQDIAFDQSGKLLVSCSADMSL  172 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~------dg~v~vwd~~~~~~~----~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i  172 (406)
                      .+|...|++|+|+|||++||+||.      |++|++|+..++...    ....+|...|.+++|+|++. +++++.||+|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence            579999999999999999999997      788999998776532    23456889999999999975 5567899999


Q ss_pred             EEEeCCCCeEE----EEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCC-EE
Q psy226          173 KLWDMSTYQCL----KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT-LL  247 (406)
Q Consensus       173 ~vwd~~~~~~~----~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l  247 (406)
                      ++||+.+++..    ....+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|++++|+|++. ++
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~  197 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF  197 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence            99999877653    23457999999999999999999999999999999999999999999999999999999875 78


Q ss_pred             EEEeCCCeEEEEeCCCccceeEE--ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe
Q psy226          248 ASCSNDHTARVWSLATKETKAEL--RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS  325 (406)
Q Consensus       248 ~s~~~d~~v~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~  325 (406)
                      ++++.|++|++||+++++....+  ..|...+.+++|+|.                 .+.+|++|+.|+.|++||+++++
T Consensus       198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~-----------------~~~~la~g~~d~~i~~wd~~~~~  260 (357)
T 4g56_B          198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE-----------------KDDTFACGDETGNVSLVNIKNPD  260 (357)
T ss_dssp             EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTT-----------------STTEEEEEESSSCEEEEESSCGG
T ss_pred             eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhc-----------------ccceEEEeecccceeEEECCCCc
Confidence            99999999999999988766544  356678999999984                 45689999999999999999999


Q ss_pred             EEEEEeCCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeC-CCCEEEEeeCCCeEEEe
Q psy226          326 LLFTLIGHDNWVRGVTFHPGG-KYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR-AHPYVVTGSVDKTVKVW  403 (406)
Q Consensus       326 ~~~~~~~h~~~v~~l~~s~~g-~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~-~~~~l~sgs~Dg~v~iw  403 (406)
                      ++..+.+|...|++++|+|++ ++|++|+.|++|+|||+.+++.+..+ +|...|++|+|+| ++.+|+|||.||+|++|
T Consensus       261 ~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW  339 (357)
T 4g56_B          261 SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHH  339 (357)
T ss_dssp             GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEE
Confidence            999999999999999999987 57999999999999999998887665 7999999999998 78999999999999999


Q ss_pred             ecC
Q psy226          404 ECR  406 (406)
Q Consensus       404 ~~~  406 (406)
                      ++.
T Consensus       340 ~~~  342 (357)
T 4g56_B          340 HLP  342 (357)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            973

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.4e-49  Score=365.28  Aligned_cols=285  Identities=25%  Similarity=0.462  Sum_probs=248.4

Q ss_pred             eEEeccCCCCeEEEEE-----cC-CCCEEEEEeCCCcEEEEEcCCC-------cEEEEecccccCeeeEEECCCCCEEEE
Q psy226           99 KFALSGHRSPVIKVIF-----HP-VFSLMASCSEDATIRLWDYETG-------EYERALHGHLDSVQDIAFDQSGKLLVS  165 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~-----~p-~~~~latgs~dg~v~vwd~~~~-------~~~~~~~~h~~~V~~l~~~~~g~~l~s  165 (406)
                      ...+.||.++|++++|     +| ++++|+||+.|++|++||+.++       .....+.+|...|.+++|+|++.+|++
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s   93 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS   93 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence            4568899999999999     76 8999999999999999998753       346678899999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee---cCCccEEEEEECC
Q psy226          166 CSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT---GHREWVRQIKVSP  242 (406)
Q Consensus       166 gs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~~~~~v~~l~~~~  242 (406)
                      |+.|++|++||+.+++++..+.+|...|.+++|+|++++|++|+.|++|++||+.. .+.....   +|..+|.+++|+|
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~  172 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSP  172 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECC
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeecc
Confidence            99999999999999999999999999999999999999999999999999999974 3333433   7889999999999


Q ss_pred             CC----------CEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC
Q psy226          243 DG----------TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR  312 (406)
Q Consensus       243 ~~----------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  312 (406)
                      ++          .+|++++.|+.|++||. .......+.+|...|.+++|+|                  ++.+|++|+.
T Consensus       173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~------------------~g~~l~sgs~  233 (343)
T 2xzm_R          173 IMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISP------------------NGKYIATGGK  233 (343)
T ss_dssp             CCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECT------------------TSSEEEEEET
T ss_pred             ccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECC------------------CCCEEEEEcC
Confidence            87          78999999999999994 4556677889999999999998                  4789999999


Q ss_pred             CCcEEEEECCC-CeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccce--eec-----------cccce
Q psy226          313 DKTIKLWDVGS-GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMK--TLE-----------AHSHF  378 (406)
Q Consensus       313 d~~i~lwd~~~-~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~--~l~-----------~h~~~  378 (406)
                      |+.|++||+.. ......+ .+...|.+++|+|+++++++| .|+.|++||+.+++...  .+.           +|...
T Consensus       234 dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (343)
T 2xzm_R          234 DKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ  311 (343)
T ss_dssp             TCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC
T ss_pred             CCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc
Confidence            99999999954 3333333 345679999999999988755 57789999998766543  333           67788


Q ss_pred             EEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          379 VTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       379 v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |.+++|+|++++|++|+.||+|++|++
T Consensus       312 v~~~~~sp~g~~l~sg~~Dg~v~~w~~  338 (343)
T 2xzm_R          312 CTSLAWNALGKKLFAGFTDGVIRTFSF  338 (343)
T ss_dssp             EEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred             eEEEEECCCCCeEEEecCCceEEEEEE
Confidence            999999999999999999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.9e-49  Score=391.98  Aligned_cols=305  Identities=22%  Similarity=0.345  Sum_probs=260.4

Q ss_pred             EEeccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          100 FALSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~-~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ..+.+|..+|++++|+|+++ .|++|+.|++|++||..+++....+.+|.+.|.+++|+|+|++|++|+.|++|++||+.
T Consensus       141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~  220 (611)
T 1nr0_A          141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV  220 (611)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence            35789999999999999987 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEe-------cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEE-------------------------
Q psy226          179 TYQCLKTMQ-------GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVK-------------------------  226 (406)
Q Consensus       179 ~~~~~~~~~-------~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~-------------------------  226 (406)
                      +++++..+.       +|...|.+++|+|++++|++|+.|++|++||+.++.++.                         
T Consensus       221 ~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  300 (611)
T 1nr0_A          221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI  300 (611)
T ss_dssp             TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred             CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEE
Confidence            999888874       799999999999999999999999999999998876543                         


Q ss_pred             ------------------EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEE-ecCCceEEEEEeCCCCC
Q psy226          227 ------------------TLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL-RGHDHTVECVAWAPGVA  287 (406)
Q Consensus       227 ------------------~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~  287 (406)
                                        .+.+|...|.+++|+|+|++|++++.|++|++||+.++.....+ .+|...|.+++|+++..
T Consensus       301 s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~  380 (611)
T 1nr0_A          301 SANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD  380 (611)
T ss_dssp             ETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC
T ss_pred             eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCc
Confidence                              34578999999999999999999999999999999887665444 46777788877765421


Q ss_pred             ccccc--------c----------------------c---------------------------------cCCCCCCCCC
Q psy226          288 SESIS--------E----------------------A---------------------------------AGRPPGQGGG  304 (406)
Q Consensus       288 ~~~~~--------~----------------------~---------------------------------~~~~~~~~~~  304 (406)
                      .....        .                      .                                 .......++|
T Consensus       381 l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg  460 (611)
T 1nr0_A          381 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK  460 (611)
T ss_dssp             EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS
T ss_pred             EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCC
Confidence            00000        0                      0                                 0001123468


Q ss_pred             CEEEEEeCCCcEEEEECCCCeE--EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Ccccee--eccccceE
Q psy226          305 PYLATGSRDKTIKLWDVGSGSL--LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN-KRNMKT--LEAHSHFV  379 (406)
Q Consensus       305 ~~l~s~~~d~~i~lwd~~~~~~--~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~-~~~~~~--l~~h~~~v  379 (406)
                      .+|++|+.|++|++||+.++..  +.. .+|...|++++|+|+|++|++++.|++|++||+.+ ++....  +..|...|
T Consensus       461 ~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V  539 (611)
T 1nr0_A          461 QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV  539 (611)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred             CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccce
Confidence            8999999999999999987654  234 68999999999999999999999999999999987 555544  34599999


Q ss_pred             EEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          380 TSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       380 ~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ++++|+|++++|||||.|++|++|++
T Consensus       540 ~~v~fspdg~~lasgs~D~~v~lW~~  565 (611)
T 1nr0_A          540 ACVSWSPDNVRLATGSLDNSVIVWNM  565 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eEEEECCCCCEEEEEECCCcEEEEEC
Confidence            99999999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.8e-47  Score=376.16  Aligned_cols=284  Identities=40%  Similarity=0.665  Sum_probs=263.7

Q ss_pred             CceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226           97 PEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus        97 ~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      .....+.+|..+|.+++|+|++.+|++++.||+|++||..+. ....+.+|...|.+++|+|+|++|++|+.|+.|++||
T Consensus       294 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~  372 (577)
T 2ymu_A          294 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  372 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEc
Confidence            334567899999999999999999999999999999998655 4567889999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeE
Q psy226          177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTA  256 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v  256 (406)
                      . +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. ++..+..+.+|...|.+++|+|++++|++++.|+.|
T Consensus       373 ~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v  450 (577)
T 2ymu_A          373 R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV  450 (577)
T ss_dssp             T-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             C-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence            6 56788899999999999999999999999999999999995 677888999999999999999999999999999999


Q ss_pred             EEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcC
Q psy226          257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNW  336 (406)
Q Consensus       257 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~  336 (406)
                      ++||. +.+....+.+|...|.+++|+|                  ++.+|++++.|+.|++||. +++++..+.+|...
T Consensus       451 ~~w~~-~~~~~~~~~~~~~~v~~~~~sp------------------d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~  510 (577)
T 2ymu_A          451 KLWNR-NGQLLQTLTGHSSSVRGVAFSP------------------DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS  510 (577)
T ss_dssp             EEEET-TSCEEEEEECCSSCEEEEEECT------------------TSCEEEEEETTSEEEEEET-TSCEEEEEECCSSC
T ss_pred             EEEEC-CCCEEEEEcCCCCCEEEEEEcC------------------CCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCC
Confidence            99996 4567788899999999999998                  4779999999999999995 78899999999999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          337 VRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       337 v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      |++++|+|+|++|++++.||.|++||. +++.+.++.+|...|++++|+|++++|+|+|.||+|++||
T Consensus       511 v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          511 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999999999999999999999999995 6788899999999999999999999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.9e-47  Score=379.73  Aligned_cols=287  Identities=22%  Similarity=0.360  Sum_probs=254.0

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--EEEEecccccCeeeEEECCCCCEEEEEeCC----Cc
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE--YERALHGHLDSVQDIAFDQSGKLLVSCSAD----MS  171 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d----~~  171 (406)
                      ....+.+|..+|++++|+|++++||+|+.||+|+|||+.+++  ....+.+|.+.|.+++|+|+|++|++++.+    +.
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~  130 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH  130 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred             cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence            345688999999999999999999999999999999987543  456788999999999999999999998875    46


Q ss_pred             EEEEeCCCCeEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEE
Q psy226          172 LKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASC  250 (406)
Q Consensus       172 i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  250 (406)
                      |++||.  ++....+.+|...|.+++|+|++. .|++|+.|++|++||..++++...+.+|...|.+++|+|+|++|++|
T Consensus       131 v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~  208 (611)
T 1nr0_A          131 VFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST  208 (611)
T ss_dssp             EEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence            777774  556677899999999999999987 69999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCccceeEEe-------cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q psy226          251 SNDHTARVWSLATKETKAELR-------GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS  323 (406)
Q Consensus       251 ~~d~~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~  323 (406)
                      +.|++|++||+.+++....+.       +|...|.+++|+|+                  +.+|++++.|++|++||+.+
T Consensus       209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd------------------g~~l~s~s~D~~v~lWd~~~  270 (611)
T 1nr0_A          209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD------------------GTKIASASADKTIKIWNVAT  270 (611)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT------------------SSEEEEEETTSEEEEEETTT
T ss_pred             ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC------------------CCEEEEEeCCCeEEEEeCCC
Confidence            999999999999888777774       79999999999984                  66788888888888888776


Q ss_pred             CeEE-------------------------------------------EEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy226          324 GSLL-------------------------------------------FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRV  360 (406)
Q Consensus       324 ~~~~-------------------------------------------~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~v  360 (406)
                      ++++                                           ..+.+|...|++++|+|+|++|++++.|++|++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~  350 (611)
T 1nr0_A          271 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINS  350 (611)
T ss_dssp             TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             CceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Confidence            6544                                           344589999999999999999999999999999


Q ss_pred             EeCCCCccceee-ccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          361 WDTANKRNMKTL-EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       361 wd~~~~~~~~~l-~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ||+.+++....+ ..|...|.+++|++++ .|++++.|+++++|+.
T Consensus       351 Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~  395 (611)
T 1nr0_A          351 WDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPA  395 (611)
T ss_dssp             EETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECS
T ss_pred             EECCCCceeeecccCCcceEEEEEECCCC-cEEEEEcCCceEEeec
Confidence            999998877665 6799999999999776 6889999999999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-46  Score=347.43  Aligned_cols=290  Identities=21%  Similarity=0.345  Sum_probs=269.1

Q ss_pred             CceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226           97 PEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus        97 ~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      .....+.+|.++|++++|+|++++|++|+.||.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCe-----------EEEEeecCCc--cEEEE
Q psy226          177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD-----KTIKMWEVATGY-----------CVKTLTGHRE--WVRQI  238 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d-----~~i~iwd~~~~~-----------~~~~~~~~~~--~v~~l  238 (406)
                      +.+++++..+. +...|.+++|+|++.++++++.+     +.|++||+..+.           ....+..|..  .+.++
T Consensus       103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (369)
T 3zwl_B          103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA  181 (369)
T ss_dssp             TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred             CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence            99999888887 88899999999999999999999     999999997653           3344556665  89999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCC-ccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEE
Q psy226          239 KVSPDGTLLASCSNDHTARVWSLAT-KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIK  317 (406)
Q Consensus       239 ~~~~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  317 (406)
                      +|+|+++++++++.||.|++||+.+ ......+..|...|.+++|+|                  ++.+|++++.|+.|+
T Consensus       182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~~l~~~~~d~~i~  243 (369)
T 3zwl_B          182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP------------------DLTYFITSSRDTNSF  243 (369)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT------------------TSSEEEEEETTSEEE
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC------------------CCCEEEEecCCceEE
Confidence            9999999999999999999999998 677888899999999999998                  477899999999999


Q ss_pred             EEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCC--------------eEEEEeCCCCccceeeccccceEEEEE
Q psy226          318 LWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK--------------TLRVWDTANKRNMKTLEAHSHFVTSLD  383 (406)
Q Consensus       318 lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~--------------~i~vwd~~~~~~~~~l~~h~~~v~~l~  383 (406)
                      +||+++++.+..+. +...+.+++|+|+++++++++.++              .+++||..+++.+..+.+|...|++++
T Consensus       244 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~  322 (369)
T 3zwl_B          244 LVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVA  322 (369)
T ss_dssp             EEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             EEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEE
Confidence            99999999988887 777899999999999999999988              899999999999999999999999999


Q ss_pred             EeCCCCEEEEeeCCCeEEEeecC
Q psy226          384 FHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       384 ~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      |+|++++|++|+.||.|++|+++
T Consensus       323 ~s~~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          323 ISPQGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEEC
T ss_pred             ECCCCCEEEEEcCCCeEEEEECc
Confidence            99999999999999999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5.7e-46  Score=342.75  Aligned_cols=288  Identities=31%  Similarity=0.555  Sum_probs=256.8

Q ss_pred             eEEeccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCc-----EEEEecccccCeeeEEECCCCCEEEEEeCCCcE
Q psy226           99 KFALSGHRSPVIKVIFHPV-FSLMASCSEDATIRLWDYETGE-----YERALHGHLDSVQDIAFDQSGKLLVSCSADMSL  172 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~-~~~latgs~dg~v~vwd~~~~~-----~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i  172 (406)
                      +.+|.||.++|++|+|+|+ +++|||||.||+|+|||+.+++     ....+.+|...|.+++|+|+|++|++|+.|+.|
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            3468999999999999998 5899999999999999987653     456788999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeE-EEEeecCCccEEEEEECCCC--CEEEE
Q psy226          173 KLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYC-VKTLTGHREWVRQIKVSPDG--TLLAS  249 (406)
Q Consensus       173 ~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~--~~l~s  249 (406)
                      ++|+............+...+..+.++|++.+|++|+.|+.+++||+..... .....+|...+..++|++++  .++++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s  190 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS  190 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred             eEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence            9999999988888888999999999999999999999999999999976544 33456889999999998865  57899


Q ss_pred             EeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q psy226          250 CSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFT  329 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~  329 (406)
                      ++.|+.|++||+.+.+....+.+|...|.+++|+|                  ++.+|++|+.|+.|++||+++++++..
T Consensus       191 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~------------------~~~~l~s~s~Dg~i~iwd~~~~~~~~~  252 (340)
T 4aow_A          191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP------------------DGSLCASGGKDGQAMLWDLNEGKHLYT  252 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT------------------TSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC------------------CCCEEEEEeCCCeEEEEEeccCceeee
Confidence            99999999999999999999999999999999998                  477999999999999999999999988


Q ss_pred             EeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee---------ccccceEEEEEEeCCCCEEEEeeCCCeE
Q psy226          330 LIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL---------EAHSHFVTSLDFHRAHPYVVTGSVDKTV  400 (406)
Q Consensus       330 ~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l---------~~h~~~v~~l~~~~~~~~l~sgs~Dg~v  400 (406)
                      +.++ ..|.+++|+|++.++ +++.|+.|++||+.++..+..+         ..|...|++++|+|++++|++|+.||.|
T Consensus       253 ~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v  330 (340)
T 4aow_A          253 LDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLV  330 (340)
T ss_dssp             EECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence            8765 579999999987655 5667999999999887665544         3678889999999999999999999999


Q ss_pred             EEeecC
Q psy226          401 KVWECR  406 (406)
Q Consensus       401 ~iw~~~  406 (406)
                      +|||++
T Consensus       331 ~iW~~~  336 (340)
T 4aow_A          331 RVWQVT  336 (340)
T ss_dssp             EEEEEE
T ss_pred             EEEeCC
Confidence            999973

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.9e-46  Score=341.72  Aligned_cols=251  Identities=27%  Similarity=0.549  Sum_probs=233.2

Q ss_pred             cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEE
Q psy226          139 EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE  218 (406)
Q Consensus       139 ~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd  218 (406)
                      +..+++.+|.+.|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|..+|.+++|+|++++|++|+.|++|++||
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCC
Q psy226          219 VATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGR  297 (406)
Q Consensus       219 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  297 (406)
                      +.++.++..+.+|...|.+++|+|++.+|++|+.|++|++||+++. .....+.+|...|.+++|+|.            
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~------------  151 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK------------  151 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT------------
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC------------
Confidence            9999999999999999999999999999999999999999999876 445678899999999999983            


Q ss_pred             CCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-CCCcCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCccceeecc
Q psy226          298 PPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI-GHDNWVRGVTFHP--GGKYLVSCGDDKTLRVWDTANKRNMKTLEA  374 (406)
Q Consensus       298 ~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~-~h~~~v~~l~~s~--~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~  374 (406)
                           ++.+|++|+.|++|++||++++.....+. +|...+..+.|+|  ++.+|++|+.|++|++||+.+++++.++.+
T Consensus       152 -----~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~  226 (304)
T 2ynn_A          152 -----DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG  226 (304)
T ss_dssp             -----CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             -----CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC
Confidence                 35689999999999999998877665554 5667899999987  778999999999999999999999999999


Q ss_pred             ccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          375 HSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       375 h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      |...|.+++|+|++++|+||+.||+|++||.+
T Consensus       227 h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             CCCCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            99999999999999999999999999999963

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.5e-46  Score=377.54  Aligned_cols=287  Identities=29%  Similarity=0.538  Sum_probs=255.1

Q ss_pred             EEeccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCC-----cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEE
Q psy226          100 FALSGHRSPVIKVIFHPVF-SLMASCSEDATIRLWDYETG-----EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK  173 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~-~~latgs~dg~v~vwd~~~~-----~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~  173 (406)
                      ..+.+|.+.|++|+|+|++ .+|+|||.||+|++||+.+.     .....+.+|...|.+++|+|+|++|++|+.|++|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence            4688999999999999875 79999999999999998763     34567889999999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe---ecCCccEEEEEECCCC--CEEE
Q psy226          174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPDG--TLLA  248 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~~--~~l~  248 (406)
                      +||+.++++...+.+|...|.+++|+|++++|++|+.|++|++||..........   .+|...|.+++|+|++  ..++
T Consensus       456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  535 (694)
T 3dm0_A          456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV  535 (694)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred             EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence            9999999999999999999999999999999999999999999998655433322   4689999999999987  6899


Q ss_pred             EEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy226          249 SCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF  328 (406)
Q Consensus       249 s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~  328 (406)
                      +|+.|++|++||+++......+.+|...|.+++|+|                  ++.+|++|+.|+.|++||+++++++.
T Consensus       536 s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp------------------dg~~l~sg~~Dg~i~iwd~~~~~~~~  597 (694)
T 3dm0_A          536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP------------------DGSLCASGGKDGVVLLWDLAEGKKLY  597 (694)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT------------------TSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC------------------CCCEEEEEeCCCeEEEEECCCCceEE
Confidence            999999999999999998999999999999999998                  47799999999999999999999988


Q ss_pred             EEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecccc-------------------ceEEEEEEeCCCC
Q psy226          329 TLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS-------------------HFVTSLDFHRAHP  389 (406)
Q Consensus       329 ~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~-------------------~~v~~l~~~~~~~  389 (406)
                      .+.. ...|.+++|+|++.+|++++ |+.|+|||+.+++.+..+..+.                   ..+++++|+|+++
T Consensus       598 ~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~  675 (694)
T 3dm0_A          598 SLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS  675 (694)
T ss_dssp             CCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSS
T ss_pred             EecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC
Confidence            7764 45799999999999888776 5569999999988776664321                   1378999999999


Q ss_pred             EEEEeeCCCeEEEeecC
Q psy226          390 YVVTGSVDKTVKVWECR  406 (406)
Q Consensus       390 ~l~sgs~Dg~v~iw~~~  406 (406)
                      +|+||+.||+|++|++.
T Consensus       676 ~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          676 TLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEEETTSEEEEEEC-
T ss_pred             EEEEEcCCCeEEEEecc
Confidence            99999999999999973

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.7e-47  Score=356.06  Aligned_cols=286  Identities=19%  Similarity=0.323  Sum_probs=262.7

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc------EEEEecccccCeeeEEECCC----C---CEEEEE
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE------YERALHGHLDSVQDIAFDQS----G---KLLVSC  166 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~------~~~~~~~h~~~V~~l~~~~~----g---~~l~sg  166 (406)
                      ..+.+|.++|++++|+|  ++|++|+.||+|++||+.+++      ....+.+|...|.+++|+|+    |   ++|++|
T Consensus        10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~   87 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   87 (397)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence            45789999999999999  899999999999999999988      67888899999999999999    9   999999


Q ss_pred             eCCCcEEEEeCCCCeE-----EEEEecC-----CcceEEEEEe----cCCCE-EEEEeCCCcEEEEEcCC------CeEE
Q psy226          167 SADMSLKLWDMSTYQC-----LKTMQGH-----DHNVTGVAFL----PNSDF-VLSASRDKTIKMWEVAT------GYCV  225 (406)
Q Consensus       167 s~d~~i~vwd~~~~~~-----~~~~~~h-----~~~v~~~~~~----p~~~~-l~s~s~d~~i~iwd~~~------~~~~  225 (406)
                      +.|+.|++||+.+++.     +..+..|     ...|.+++|+    |++++ |++++.|+.|++||+.+      +..+
T Consensus        88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  167 (397)
T 1sq9_A           88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  167 (397)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence            9999999999988776     7888888     5899999999    99999 99999999999999988      6666


Q ss_pred             E-----Eee-------cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEec---C---CceEEEEEeCCCCC
Q psy226          226 K-----TLT-------GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRG---H---DHTVECVAWAPGVA  287 (406)
Q Consensus       226 ~-----~~~-------~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~~  287 (406)
                      .     .+.       .|...|.+++|+|++ ++++++.|+.|++||+++.+....+..   |   ...|.+++|+|   
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~---  243 (397)
T 1sq9_A          168 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP---  243 (397)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS---
T ss_pred             eccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC---
Confidence            5     664       488999999999999 999999999999999999988888988   9   99999999998   


Q ss_pred             ccccccccCCCCCCCCCCEEEEEeCC---CcEEEEECCCCeEEEEEeC-------------CCcCEEEEEEcCCCCEEEE
Q psy226          288 SESISEAAGRPPGQGGGPYLATGSRD---KTIKLWDVGSGSLLFTLIG-------------HDNWVRGVTFHPGGKYLVS  351 (406)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~lwd~~~~~~~~~~~~-------------h~~~v~~l~~s~~g~~l~s  351 (406)
                                     ++.+|++++.|   +.|++||+++++.+..+.+             |...|.+++|+|++++|++
T Consensus       244 ---------------~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  308 (397)
T 1sq9_A          244 ---------------QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  308 (397)
T ss_dssp             ---------------STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             ---------------CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE
Confidence                           46789999999   9999999999999999998             9999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCccceeec------cc---------------cceEEEEEEeCCC----------CEEEEeeCCCeE
Q psy226          352 CGDDKTLRVWDTANKRNMKTLE------AH---------------SHFVTSLDFHRAH----------PYVVTGSVDKTV  400 (406)
Q Consensus       352 gs~d~~i~vwd~~~~~~~~~l~------~h---------------~~~v~~l~~~~~~----------~~l~sgs~Dg~v  400 (406)
                      |+.||.|++||+.+++.+.++.      .|               ...|++++|+|++          ++|++|+.||.|
T Consensus       309 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i  388 (397)
T 1sq9_A          309 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI  388 (397)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred             EeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence            9999999999999999999998      77               8999999999998          799999999999


Q ss_pred             EEeecC
Q psy226          401 KVWECR  406 (406)
Q Consensus       401 ~iw~~~  406 (406)
                      ++|+++
T Consensus       389 ~iw~~~  394 (397)
T 1sq9_A          389 RWFREA  394 (397)
T ss_dssp             EEEEEE
T ss_pred             EEEEcC
Confidence            999963

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-45  Score=338.37  Aligned_cols=247  Identities=27%  Similarity=0.505  Sum_probs=238.4

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      ..+.||..+|.+++|+|++.++++|+.|++|++||+.+++....+..|...+.+++|+|++++|++|+.|+.|++||+.+
T Consensus        74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~  153 (321)
T 3ow8_A           74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES  153 (321)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT
T ss_pred             eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW  259 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vw  259 (406)
                      ++....+..|...|.+++|+|++++|++|+.|+.|++||++++..+..+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus       154 ~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iw  233 (321)
T 3ow8_A          154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIY  233 (321)
T ss_dssp             CSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred             CceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEE
Confidence            99988999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEE
Q psy226          260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRG  339 (406)
Q Consensus       260 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~  339 (406)
                      |+++......+.+|...|.+++|+|                  ++.+|++|+.|++|++||+.+++++.++.+|...|.+
T Consensus       234 d~~~~~~~~~~~~h~~~v~~~~~sp------------------~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~  295 (321)
T 3ow8_A          234 DVQHANLAGTLSGHASWVLNVAFCP------------------DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWG  295 (321)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECT------------------TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             ECCCcceeEEEcCCCCceEEEEECC------------------CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEE
Confidence            9999998999999999999999998                  4778999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          340 VTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       340 l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      ++|+|+|++|++++.|++|+|||..
T Consensus       296 v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          296 VKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999963

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.1e-45  Score=335.61  Aligned_cols=286  Identities=22%  Similarity=0.370  Sum_probs=258.1

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE---EEec--ccccCeeeEEECCCCCEEEEEeCCCcE
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE---RALH--GHLDSVQDIAFDQSGKLLVSCSADMSL  172 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~---~~~~--~h~~~V~~l~~~~~g~~l~sgs~d~~i  172 (406)
                      ......+|..+|++++|+|++++|++++ ||.|++||+.+++..   ..+.  +|...|.+++|+|++++|++++.|+.|
T Consensus        43 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  121 (337)
T 1gxr_A           43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL  121 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred             ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence            3444568999999999999999999999 999999999876532   2232  789999999999999999999999999


Q ss_pred             EEEeCCCCe--EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEE
Q psy226          173 KLWDMSTYQ--CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASC  250 (406)
Q Consensus       173 ~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  250 (406)
                      ++||+.+++  ....+.+|...|.+++|+|+++++++++.|+.|++||++++..+..+.+|...+.+++|+|++++++++
T Consensus       122 ~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  201 (337)
T 1gxr_A          122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG  201 (337)
T ss_dssp             EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEE
Confidence            999998876  667788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy226          251 SNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL  330 (406)
Q Consensus       251 ~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~  330 (406)
                      +.|+.|++||+++.+....+ .+...+.+++|+|                  ++.++++++.|+.|++||+.++.. ..+
T Consensus       202 ~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~------------------~~~~l~~~~~~~~i~~~~~~~~~~-~~~  261 (337)
T 1gxr_A          202 GLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCP------------------TGEWLAVGMESSNVEVLHVNKPDK-YQL  261 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECT------------------TSSEEEEEETTSCEEEEETTSSCE-EEE
T ss_pred             ecCCcEEEEECCCCceEeee-cCCCceEEEEECC------------------CCCEEEEEcCCCcEEEEECCCCCe-EEE
Confidence            99999999999988776665 4677899999998                  467899999999999999998775 467


Q ss_pred             eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          331 IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       331 ~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ..|...|.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++
T Consensus       262 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            889999999999999999999999999999999988877443 47788999999999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.3e-45  Score=360.26  Aligned_cols=286  Identities=41%  Similarity=0.677  Sum_probs=264.3

Q ss_pred             CCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEE
Q psy226           96 APEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW  175 (406)
Q Consensus        96 ~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vw  175 (406)
                      ......+.+|..+|++++|+|+++.|++++.|++|++||.. ++....+.+|...|.+++|+|++++|++++.|++|++|
T Consensus       252 ~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w  330 (577)
T 2ymu_A          252 GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW  330 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34455678999999999999999999999999999999964 56778889999999999999999999999999999999


Q ss_pred             eCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCe
Q psy226          176 DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHT  255 (406)
Q Consensus       176 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~  255 (406)
                      |... +.+..+.+|...|.+++|+|++++|++|+.|++|++||. ++..+..+.+|...|.+++|+|+|++|++++.|+.
T Consensus       331 ~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~  408 (577)
T 2ymu_A          331 NRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT  408 (577)
T ss_dssp             ETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred             eCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence            9865 456788899999999999999999999999999999995 67788899999999999999999999999999999


Q ss_pred             EEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc
Q psy226          256 ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN  335 (406)
Q Consensus       256 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~  335 (406)
                      |++||. +.+....+.+|...|.+++|+|                  ++.+|++++.|+.|++||. +++.+..+.+|..
T Consensus       409 v~~~~~-~~~~~~~~~~~~~~v~~~~~s~------------------d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~  468 (577)
T 2ymu_A          409 VKLWNR-NGQLLQTLTGHSSSVWGVAFSP------------------DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSS  468 (577)
T ss_dssp             EEEECT-TCCEEEEEECCSSCEEEEEECT------------------TSSEEEEEETTSEEEEEET-TSCEEEEEECCSS
T ss_pred             EEEEeC-CCCEEEEecCCCCCeEEEEECC------------------CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCC
Confidence            999996 4567788899999999999998                  4678999999999999996 6788889999999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .|++++|+|++++|++++.|+.|++||. +++.++++.+|...|++++|+|++++||+|+.||.|++||.
T Consensus       469 ~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          469 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            9999999999999999999999999995 67888999999999999999999999999999999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1e-45  Score=351.05  Aligned_cols=248  Identities=34%  Similarity=0.611  Sum_probs=237.3

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ...+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus       143 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~  222 (410)
T 1vyh_C          143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ  222 (410)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCC---------------
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD---------------  243 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---------------  243 (406)
                      ++.++..+.+|...|.++.|+|++.++++|+.|++|++||+.++.+...+.+|...|.+++|+|+               
T Consensus       223 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  302 (410)
T 1vyh_C          223 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK  302 (410)
T ss_dssp             TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred             CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999996               


Q ss_pred             -----CCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEE
Q psy226          244 -----GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL  318 (406)
Q Consensus       244 -----~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~l  318 (406)
                           |.+|++|+.|++|++||++++.....+.+|...|.++.|+|                  ++.+|++|+.|+.|++
T Consensus       303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~------------------~g~~l~s~s~D~~i~v  364 (410)
T 1vyh_C          303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS------------------GGKFILSCADDKTLRV  364 (410)
T ss_dssp             -----CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS------------------SSSCEEEEETTTEEEE
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC------------------CCCEEEEEeCCCeEEE
Confidence                 67899999999999999999999999999999999999998                  4778999999999999


Q ss_pred             EECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          319 WDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       319 wd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      ||+.+++++..+.+|...|++++|+|++.+|++||.||+|+||+.+
T Consensus       365 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          365 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             ECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9999999999999999999999999999999999999999999863

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-45  Score=344.39  Aligned_cols=285  Identities=18%  Similarity=0.227  Sum_probs=254.0

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE--YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      +..|.++|++++|+|++++|++|+.||.|++||..+++  ....+.+|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            45699999999999999999999999999999999987  7788899999999999999999999999999999999988


Q ss_pred             CeEEEE--EecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe----EEEEeecCCccEEEEEECCCCCEEEEEeCC
Q psy226          180 YQCLKT--MQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY----CVKTLTGHREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       180 ~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                      ++....  +..|...|.+++|+|++++|++++.|+.|++||+.++.    ......+|...|.+++|+|++++|++++.|
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            875444  36788999999999999999999999999999998875    233346789999999999999999999999


Q ss_pred             CeEEEEeCC------------------CccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCc
Q psy226          254 HTARVWSLA------------------TKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT  315 (406)
Q Consensus       254 ~~v~vwd~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  315 (406)
                      +.|++||+.                  .......+..|...|.++.|+|                  ++.+|++++.|+.
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~~l~~~~~d~~  225 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA------------------NGSRVAWVSHDST  225 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS------------------SSSEEEEEETTTE
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC------------------CCCEEEEEeCCCE
Confidence            999999953                  5667777889999999999998                  4678999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Cc--------------------------
Q psy226          316 IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN--KR--------------------------  367 (406)
Q Consensus       316 i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~--~~--------------------------  367 (406)
                      |++||+++++++..+..|...|.+++|+|++++|++| .|+.|++||+.+  +.                          
T Consensus       226 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (372)
T 1k8k_C          226 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN  304 (372)
T ss_dssp             EEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred             EEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence            9999999999999999999999999999999988887 899999999977  31                          


Q ss_pred             ------cc------eee-ccccceEEEEEEe-CCC---CEEEEeeCCCeEEEeec
Q psy226          368 ------NM------KTL-EAHSHFVTSLDFH-RAH---PYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       368 ------~~------~~l-~~h~~~v~~l~~~-~~~---~~l~sgs~Dg~v~iw~~  405 (406)
                            ..      ..+ .+|...|++++|+ +++   .+|+||+.||.|++|++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          305 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             cccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence                  00      233 4899999999977 666   89999999999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.6e-46  Score=348.25  Aligned_cols=286  Identities=22%  Similarity=0.383  Sum_probs=253.4

Q ss_pred             EeccCCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCcEEEEecc-----cccCeeeEEECCC----CCEEEEEe
Q psy226          101 ALSGHRSPVIKVIFHPV----FSLMASCSEDATIRLWDYETGEYERALHG-----HLDSVQDIAFDQS----GKLLVSCS  167 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~----~~~latgs~dg~v~vwd~~~~~~~~~~~~-----h~~~V~~l~~~~~----g~~l~sgs  167 (406)
                      ...+|.++|++++|+|+    ...+++++.++.|++||+.+++....+..     |...|.+++|+|+    |.+|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            45689999999999994    55677777778999999998877666654     4577999999998    67999999


Q ss_pred             CCCcEEEEeCCCCeEEEEEecCCcceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCeEEEEe---ecCCccEEEEEECCC
Q psy226          168 ADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIKVSPD  243 (406)
Q Consensus       168 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~  243 (406)
                      .|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.++..+..+   .+|...|.+++|+|+
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            999999999999999999999999999999999 8999999999999999999999998888   689999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCccceeEEe----------------------------cCCceEEEEEeCCCCCcccccccc
Q psy226          244 GTLLASCSNDHTARVWSLATKETKAELR----------------------------GHDHTVECVAWAPGVASESISEAA  295 (406)
Q Consensus       244 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~~~~~~~~~  295 (406)
                      +.+|++++.|+.|++||+++.+....+.                            .|...|.++.|.            
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------  240 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL------------  240 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE------------
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc------------
Confidence            9999999999999999998765543333                            277888888875            


Q ss_pred             CCCCCCCCCCEEEEEeCCCcEEEEECCCCe--------------EEEEEeCCCcCEEEEEEcCC--CCEEEEEeCCCeEE
Q psy226          296 GRPPGQGGGPYLATGSRDKTIKLWDVGSGS--------------LLFTLIGHDNWVRGVTFHPG--GKYLVSCGDDKTLR  359 (406)
Q Consensus       296 ~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~--------------~~~~~~~h~~~v~~l~~s~~--g~~l~sgs~d~~i~  359 (406)
                              +.++++++.|+.|++||++++.              .+..+.+|...|.+++|+|+  +++|++|+.||.|+
T Consensus       241 --------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~  312 (366)
T 3k26_A          241 --------GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLY  312 (366)
T ss_dssp             --------TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEE
T ss_pred             --------CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEE
Confidence                    3489999999999999988764              47888999999999999999  99999999999999


Q ss_pred             EEeCCCCccce----eeccc--cceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          360 VWDTANKRNMK----TLEAH--SHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       360 vwd~~~~~~~~----~l~~h--~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +||+.+++...    .+..|  ...|++++|+|++++|++|+.||.|++||+.
T Consensus       313 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          313 VWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99999876544    67777  6899999999999999999999999999973

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-45  Score=346.45  Aligned_cols=285  Identities=18%  Similarity=0.266  Sum_probs=248.2

Q ss_pred             eEEeccCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCcEEEEec--ccccCeeeEEECC-CCCEEEEEeCCCcEEE
Q psy226           99 KFALSGHRSPVIKVIFHPVF-SLMASCSEDATIRLWDYETGEYERALH--GHLDSVQDIAFDQ-SGKLLVSCSADMSLKL  174 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~-~~latgs~dg~v~vwd~~~~~~~~~~~--~h~~~V~~l~~~~-~g~~l~sgs~d~~i~v  174 (406)
                      ...+.+|..+|++++|+|++ ++||+|+.||+|++||+.+++....+.  +|...|.+++|+| ++.+|++|+.|+.|++
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL  145 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence            34678999999999999999 999999999999999999988777665  6999999999999 7899999999999999


Q ss_pred             EeCCCCeEEEEEecC---CcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCC-EEEEE
Q psy226          175 WDMSTYQCLKTMQGH---DHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT-LLASC  250 (406)
Q Consensus       175 wd~~~~~~~~~~~~h---~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~  250 (406)
                      ||+.+ ..+..+..+   ...|.+++|+|++++|++|+.|+.|++||+ ++..+..+.+|...|.+++|+|++. ++++|
T Consensus       146 wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  223 (383)
T 3ei3_B          146 RDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATS  223 (383)
T ss_dssp             EETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred             EECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence            99986 555566544   478999999999999999999999999999 5778899999999999999999999 99999


Q ss_pred             eCCCeEEEEeCCC----ccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE
Q psy226          251 SNDHTARVWSLAT----KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL  326 (406)
Q Consensus       251 ~~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~  326 (406)
                      +.|+.|++||+++    ......+ +|...|.+++|+|.                 ++.+|++++.|+.|++||++++..
T Consensus       224 ~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~-----------------~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          224 SVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPT-----------------DSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             ETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTT-----------------TSCEEEEEESSSEEEEEETTBTTS
T ss_pred             eCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCC-----------------CCCEEEEEcCCCcEEEEECCCCcc
Confidence            9999999999987    4444444 79999999999982                 367899999999999999998877


Q ss_pred             EEEEeCCC-----------------cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc--ccceEEEEEEeCC
Q psy226          327 LFTLIGHD-----------------NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA--HSHFVTSLDFHRA  387 (406)
Q Consensus       327 ~~~~~~h~-----------------~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~--h~~~v~~l~~~~~  387 (406)
                      +..+.+|.                 ..+..++|+|+|++  +|+.|+.|++||+.+++.+.++.+  |...+.+++|+|+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~  363 (383)
T 3ei3_B          286 PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPT  363 (383)
T ss_dssp             CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTT
T ss_pred             ccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecC
Confidence            66666543                 23444666777766  778999999999999999999976  5677888899999


Q ss_pred             CCEEEEeeCCCeEEEeecC
Q psy226          388 HPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       388 ~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +++|++|+ ||.|++||++
T Consensus       364 g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          364 GDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             SSEEEEEE-TTEEEEEECC
T ss_pred             ccEEEEec-CCcEEEEecC
Confidence            99999997 9999999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-44  Score=330.29  Aligned_cols=282  Identities=28%  Similarity=0.424  Sum_probs=257.5

Q ss_pred             CceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226           97 PEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus        97 ~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      .....+.+|.++|++++| |++.+|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++|+.|+.|++|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            345678999999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC---CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC-CCCEEEEEeC
Q psy226          177 MST---YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP-DGTLLASCSN  252 (406)
Q Consensus       177 ~~~---~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~  252 (406)
                      +..   .+.+..+.+|...|.+++|  +++++++++.|+.|++||  .+.....+..|...+.++.+.| ++.++++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  163 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA  163 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred             eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence            864   3567788899999999999  577999999999999999  6778888999999999999988 9999999999


Q ss_pred             CCeEEEEeCCCccceeEEec-CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q psy226          253 DHTARVWSLATKETKAELRG-HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI  331 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~  331 (406)
                      |+.|++||.  ......+.. |...+.+++|+|+                  +. +++++.|+.|++||+++++++..+.
T Consensus       164 d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~------------------~~-~~~~~~dg~i~i~d~~~~~~~~~~~  222 (313)
T 3odt_A          164 DKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDD------------------GH-FISCSNDGLIKLVDMHTGDVLRTYE  222 (313)
T ss_dssp             TSCEEEEET--TEEEEEECSSCSSCEEEEEEEET------------------TE-EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCCEEEEec--CceEEEEeccCcccEEEEEEcCC------------------Ce-EEEccCCCeEEEEECCchhhhhhhh
Confidence            999999993  445566666 8899999999873                  44 8999999999999999999999999


Q ss_pred             CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       332 ~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +|...|++++|+|++ .|++++.||.|++||+.+++.+..+..|...|.+++|+|+++ +++++.||.|++||++
T Consensus       223 ~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          223 GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred             cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence            999999999999999 588999999999999999999999999999999999999998 5569999999999974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-45  Score=351.44  Aligned_cols=298  Identities=11%  Similarity=0.189  Sum_probs=255.8

Q ss_pred             cCCCCCCceEEe-ccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCC---Cc---EEEEecccccCeeeEEECCCCCE
Q psy226           91 EWIPRAPEKFAL-SGHRSPVIKVIFHP-VFSLMASCSEDATIRLWDYET---GE---YERALHGHLDSVQDIAFDQSGKL  162 (406)
Q Consensus        91 ~~~~~~~~~~~l-~~h~~~V~~v~~~p-~~~~latgs~dg~v~vwd~~~---~~---~~~~~~~h~~~V~~l~~~~~g~~  162 (406)
                      .|.+.......+ .+|.++|++++|+| ++.+||+|+.||+|+|||+.+   +.   ....+ +|...|.+++|+|++++
T Consensus        47 ~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~  125 (437)
T 3gre_A           47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDA  125 (437)
T ss_dssp             GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSE
T ss_pred             cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCE
Confidence            566766667777 89999999999999 999999999999999999876   43   12222 58999999999999999


Q ss_pred             EEEEeCCCcEEEEeCC---CCeEEEEEec------------CCcceEEEE--EecCCCEEEEEeCCCcEEEEEcCCCeEE
Q psy226          163 LVSCSADMSLKLWDMS---TYQCLKTMQG------------HDHNVTGVA--FLPNSDFVLSASRDKTIKMWEVATGYCV  225 (406)
Q Consensus       163 l~sgs~d~~i~vwd~~---~~~~~~~~~~------------h~~~v~~~~--~~p~~~~l~s~s~d~~i~iwd~~~~~~~  225 (406)
                      |++|+.|++|++||+.   +++....+.+            +...+.++.  ++|++.+|++|+.|++|++||++++.++
T Consensus       126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  205 (437)
T 3gre_A          126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL  205 (437)
T ss_dssp             EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee
Confidence            9999999999999994   4544444332            344566666  4577899999999999999999999999


Q ss_pred             EEeec--CCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe-cCCceEEEEEeCCCCCccccccccCCCCCCC
Q psy226          226 KTLTG--HREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR-GHDHTVECVAWAPGVASESISEAAGRPPGQG  302 (406)
Q Consensus       226 ~~~~~--~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  302 (406)
                      ..+.+  |...|.+++|+|++.+|++|+.||.|++||+++...+..+. .|..+|.++.|.|...              .
T Consensus       206 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s--------------~  271 (437)
T 3gre_A          206 QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYG--------------K  271 (437)
T ss_dssp             EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTC--------------T
T ss_pred             EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccC--------------C
Confidence            99988  89999999999999999999999999999999988888776 7888999999987432              2


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEeCC--------------------------CcCEEEEEEcCCCCEEEEEeCCC
Q psy226          303 GGPYLATGSRDKTIKLWDVGSGSLLFTLIGH--------------------------DNWVRGVTFHPGGKYLVSCGDDK  356 (406)
Q Consensus       303 ~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h--------------------------~~~v~~l~~s~~g~~l~sgs~d~  356 (406)
                      ++.+|++|+.|+.|++||+++++++..+.+|                          ...|++++|+ ++++|++|+.|+
T Consensus       272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~  350 (437)
T 3gre_A          272 NSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATS  350 (437)
T ss_dssp             TEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGT
T ss_pred             CccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCC
Confidence            4679999999999999999999988887754                          4557888998 779999999999


Q ss_pred             eEEEEeCCCCccceeecc-------------------------------------ccceEEEEEEeCC--CCEEEEeeCC
Q psy226          357 TLRVWDTANKRNMKTLEA-------------------------------------HSHFVTSLDFHRA--HPYVVTGSVD  397 (406)
Q Consensus       357 ~i~vwd~~~~~~~~~l~~-------------------------------------h~~~v~~l~~~~~--~~~l~sgs~D  397 (406)
                      .|++||+.+++....+.+                                     |...|++++|+++  +.+|+||+.|
T Consensus       351 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d  430 (437)
T 3gre_A          351 SIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS  430 (437)
T ss_dssp             EEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred             eEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence            999999999888777765                                     7889999999998  7899999999


Q ss_pred             CeEEEee
Q psy226          398 KTVKVWE  404 (406)
Q Consensus       398 g~v~iw~  404 (406)
                      |.|+||+
T Consensus       431 G~I~iw~  437 (437)
T 3gre_A          431 GLIGIFQ  437 (437)
T ss_dssp             SCEEEEC
T ss_pred             ceEEEeC
Confidence            9999995

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-45  Score=345.59  Aligned_cols=281  Identities=16%  Similarity=0.272  Sum_probs=262.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      |.++|++++|+|++.+|++|+.||.|++|| .+++....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+.
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            788999999999999999999999999999 6778888899999999999999999999999999999999999999998


Q ss_pred             EEecCCcc---------------eEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEE
Q psy226          185 TMQGHDHN---------------VTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLAS  249 (406)
Q Consensus       185 ~~~~h~~~---------------v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  249 (406)
                      .+..+...               +.+++|+|+ ..+++++.|+.|++||+.++..+..+.+|...|.+++|+|++++|++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  264 (425)
T 1r5m_A          186 HFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS  264 (425)
T ss_dssp             EECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred             EeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence            88888776               999999987 46889999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q psy226          250 CSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFT  329 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~  329 (406)
                      ++.|+.|++||+.+.+....+..|...|.++.|+|+                  + ++++++.|+.|++||+++++.+..
T Consensus       265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------~-~l~~~~~d~~i~i~d~~~~~~~~~  325 (425)
T 1r5m_A          265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD------------------D-KVISCSMDGSVRLWSLKQNTLLAL  325 (425)
T ss_dssp             EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT------------------T-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EcCCCEEEEEECCCCccceEecCCCccEEEEEECCC------------------C-EEEEEeCCCcEEEEECCCCcEeEe
Confidence            999999999999999999999999999999999983                  4 899999999999999999999999


Q ss_pred             EeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--------------------cceeeccccc--eEEEEEEeCC
Q psy226          330 LIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR--------------------NMKTLEAHSH--FVTSLDFHRA  387 (406)
Q Consensus       330 ~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~--------------------~~~~l~~h~~--~v~~l~~~~~  387 (406)
                      +..|...|.+++|+|++++|++++.||.|++||+.+++                    .+..+..|..  .|++++|+|+
T Consensus       326 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  405 (425)
T 1r5m_A          326 SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA  405 (425)
T ss_dssp             EECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred             cccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence            99999999999999999999999999999999998887                    7888888866  9999999999


Q ss_pred             CCEEEEeeCCCeEEEeecC
Q psy226          388 HPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       388 ~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +++|++|+.||.|++|+++
T Consensus       406 ~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          406 GNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             SSEEEEEESSSCCEEEECC
T ss_pred             CceEEEEecCceEEEEeec
Confidence            9999999999999999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1e-43  Score=338.39  Aligned_cols=294  Identities=27%  Similarity=0.461  Sum_probs=254.2

Q ss_pred             CcCCCCCCceEEec-cC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec--ccccCeeeEEECCCCCEEE
Q psy226           90 TEWIPRAPEKFALS-GH--RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH--GHLDSVQDIAFDQSGKLLV  164 (406)
Q Consensus        90 ~~~~~~~~~~~~l~-~h--~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~g~~l~  164 (406)
                      ...+|..|.+..-. +-  .-.++.|+|+++ ++||+|. |++|+|||..+|+....+.  +|...|++|+|+|+|++|+
T Consensus        86 ~r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~la  163 (420)
T 4gga_A           86 CRYIPSLPDRILDAPEIRNDYYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA  163 (420)
T ss_dssp             CCCCCSSCSEEEECTTCCCCTTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred             CcccCCCCceEEECCCCcccccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEE
Confidence            34566666554211 11  124778999975 5888776 9999999999999877654  6778899999999999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC-eEEEEeecCCccEEEEEECCC
Q psy226          165 SCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSPD  243 (406)
Q Consensus       165 sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~  243 (406)
                      +|+.|++|++||+.+++++..+.+|...+.+++++  +.+|++|+.|+.+++||.... ..+..+.+|...+..+.++|+
T Consensus       164 sgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~  241 (420)
T 4gga_A          164 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD  241 (420)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCC
Confidence            99999999999999999999999999999988775  679999999999999998764 566788999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCcc----ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE--EeCCCcEE
Q psy226          244 GTLLASCSNDHTARVWSLATKE----TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT--GSRDKTIK  317 (406)
Q Consensus       244 ~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--~~~d~~i~  317 (406)
                      +.++++++.|+.+++|+..+++    .......|...|.+++|+|.                 ...++++  |+.|++|+
T Consensus       242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~-----------------~~~~la~~~gs~D~~I~  304 (420)
T 4gga_A          242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW-----------------QSNVLATGGGTSDRHIR  304 (420)
T ss_dssp             SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTT-----------------CTTEEEEEECTTTCEEE
T ss_pred             CCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCC-----------------cccEEEEEeecCCCEEE
Confidence            9999999999999999998654    34567789999999999985                 2345554  45899999


Q ss_pred             EEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEee
Q psy226          318 LWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCG--DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGS  395 (406)
Q Consensus       318 lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs--~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs  395 (406)
                      +||+.+++++..+..|. .+.++.|+|+++.+++++  .|+.|+|||+.+++.+.++.+|.+.|++|+|+|++++|||||
T Consensus       305 iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s  383 (420)
T 4gga_A          305 IWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA  383 (420)
T ss_dssp             EEETTTTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred             EEeCCccccceeecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            99999999998887664 588999999999998765  799999999999999999999999999999999999999999


Q ss_pred             CCCeEEEeec
Q psy226          396 VDKTVKVWEC  405 (406)
Q Consensus       396 ~Dg~v~iw~~  405 (406)
                      .||+|+|||+
T Consensus       384 ~D~tvriWdv  393 (420)
T 4gga_A          384 ADETLRLWRC  393 (420)
T ss_dssp             TTTEEEEECC
T ss_pred             cCCeEEEEEC
Confidence            9999999997

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.4e-45  Score=342.34  Aligned_cols=292  Identities=13%  Similarity=0.211  Sum_probs=249.5

Q ss_pred             eEEeccCCCCeEEEEEcCCCC-EEEEEeC---CCcEEEEEcCCCcEEEEe-cccccCeeeEEECCC---CCEEEEEeCCC
Q psy226           99 KFALSGHRSPVIKVIFHPVFS-LMASCSE---DATIRLWDYETGEYERAL-HGHLDSVQDIAFDQS---GKLLVSCSADM  170 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~-~latgs~---dg~v~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~---g~~l~sgs~d~  170 (406)
                      ...+.+|..+|++++|+|++. ++++|+.   ||.|++||+.+++..... .+|...|.+++|+|+   |.+|++|+.|+
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            345678999999999999996 4556666   999999999998866543 379999999999998   69999999999


Q ss_pred             cEEEEeCCCCe-EEEEEecCCcceEEEEE------ecCCCEEEEEeCCCcEEEEEcCCCe-EEEEeecCCc----cEEEE
Q psy226          171 SLKLWDMSTYQ-CLKTMQGHDHNVTGVAF------LPNSDFVLSASRDKTIKMWEVATGY-CVKTLTGHRE----WVRQI  238 (406)
Q Consensus       171 ~i~vwd~~~~~-~~~~~~~h~~~v~~~~~------~p~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~----~v~~l  238 (406)
                      .|++||+.+++ .+..+.+|...|.++.|      +|++++|++++.|++|++||+.++. .+..+..|..    .+.++
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred             eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence            99999999887 78889999999999965      6789999999999999999999886 6777766554    78888


Q ss_pred             E----ECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC
Q psy226          239 K----VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK  314 (406)
Q Consensus       239 ~----~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  314 (406)
                      +    |+|++.++++++.|+.|++||+++.... ....|...|.++.|+|..               .++.++++++.|+
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~---------------~~~~~l~~~~~dg  234 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKD---------------ISMNKLVATSLEG  234 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSS---------------SSCCEEEEEESTT
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCC---------------CCCCEEEEECCCC
Confidence            8    7899999999999999999999987764 446788999999999821               0356899999999


Q ss_pred             cEEEEECCCCeEEEE-----EeCCCcCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC-------------------ccc
Q psy226          315 TIKLWDVGSGSLLFT-----LIGHDNWVRGVTFHPGGK-YLVSCGDDKTLRVWDTANK-------------------RNM  369 (406)
Q Consensus       315 ~i~lwd~~~~~~~~~-----~~~h~~~v~~l~~s~~g~-~l~sgs~d~~i~vwd~~~~-------------------~~~  369 (406)
                      .|++||+++++.+..     +.+|...|.+++|+|+++ +|++|+.||.|++||+.++                   +.+
T Consensus       235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~  314 (357)
T 3i2n_A          235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLL  314 (357)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEE
T ss_pred             eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccccee
Confidence            999999987654433     348999999999999998 8999999999999998753                   346


Q ss_pred             eeeccccceEEEEEEeCCCCEEE-EeeCCCeEEEeecC
Q psy226          370 KTLEAHSHFVTSLDFHRAHPYVV-TGSVDKTVKVWECR  406 (406)
Q Consensus       370 ~~l~~h~~~v~~l~~~~~~~~l~-sgs~Dg~v~iw~~~  406 (406)
                      ..+..|...|++++|+|++++|+ +|+.||.|++||+.
T Consensus       315 ~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          315 QNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             EEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             eccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence            67788999999999999999998 89999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2e-44  Score=333.70  Aligned_cols=246  Identities=21%  Similarity=0.298  Sum_probs=216.8

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE----EecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER----ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~----~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ..|..+|++++|+|++ .|++|+.||+|+|||+.+++...    .+.+|.+.|++|+|+|+|++|++|+.|++|++||+.
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            3467889999999984 78899999999999999886433    345899999999999999999999999999999999


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEEee--cCCccEEEEEECCC-CCEEEEEeCCC
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKTLT--GHREWVRQIKVSPD-GTLLASCSNDH  254 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~l~s~~~d~  254 (406)
                      +++++..+.+|...|.+++|+|++. +|++|+.|++|++||++++++...+.  .|...+.+++|+|+ +++|++|+.|+
T Consensus       158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg  237 (344)
T 4gqb_B          158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG  237 (344)
T ss_dssp             TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred             CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence            9999999999999999999999885 78999999999999999998887764  45567899999995 57889999999


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD  334 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~  334 (406)
                      +|++||+++++.+..+.+|...|.+++|+|+                 +..+|++|+.|++|+|||+.+++++ .+.+|.
T Consensus       238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~-----------------g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~  299 (344)
T 4gqb_B          238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPH-----------------SVPFLASLSEDCSLAVLDSSLSELF-RSQAHR  299 (344)
T ss_dssp             EEEEEESCC--CCEEEECCSSCEEEEEECSS-----------------SSCCEEEEETTSCEEEECTTCCEEE-EECCCS
T ss_pred             cEEEEECCCCcEEEEEcCCCCCEEEEEEccC-----------------CCeEEEEEeCCCeEEEEECCCCcEE-EEcCCC
Confidence            9999999999999999999999999999984                 2357999999999999999988765 678999


Q ss_pred             cCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc
Q psy226          335 NWVRGVTFHPGGK-YLVSCGDDKTLRVWDTANKR  367 (406)
Q Consensus       335 ~~v~~l~~s~~g~-~l~sgs~d~~i~vwd~~~~~  367 (406)
                      +.|++++|+|+++ +|++||.|++|++|++.+..
T Consensus       300 ~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          300 DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            9999999999986 56799999999999997653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-46  Score=352.65  Aligned_cols=284  Identities=17%  Similarity=0.209  Sum_probs=237.3

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG--EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~--~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      +..|.++|++++|+|++++||+|+.||.|++||+.++  +....+.+|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            4457789999999999999999999999999999998  67778889999999999999999999999999999999988


Q ss_pred             Ce---EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe---EEEEeec-CCccEEEEEECCCCCEEEEEeC
Q psy226          180 YQ---CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY---CVKTLTG-HREWVRQIKVSPDGTLLASCSN  252 (406)
Q Consensus       180 ~~---~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~  252 (406)
                      ++   ....+.+|...|.+++|+|++++|++|+.|++|++||+.++.   ....+.+ |...|.+++|+|++++|++++.
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence            76   667788899999999999999999999999999999999876   4677777 9999999999999999999999


Q ss_pred             CCeEEEEeCCC------------------ccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC
Q psy226          253 DHTARVWSLAT------------------KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK  314 (406)
Q Consensus       253 d~~v~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  314 (406)
                      |+.|++||+..                  ......+ +|...|.+++|+|                  ++.+|++++.|+
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp------------------~~~~l~~~~~d~  227 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP------------------SGNALAYAGHDS  227 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT------------------TSSCEEEEETTT
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC------------------CCCEEEEEeCCC
Confidence            99999999852                  3344455 8999999999998                  467899999999


Q ss_pred             cEEEEECCCCeE----EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CC-ccc-------------------
Q psy226          315 TIKLWDVGSGSL----LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA-NK-RNM-------------------  369 (406)
Q Consensus       315 ~i~lwd~~~~~~----~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~-~~-~~~-------------------  369 (406)
                      .|++||+.++..    +..+.+|...|.+++|+|+|++|++|+.|+.+ +|+.. ++ +..                   
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (377)
T 3dwl_C          228 SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTG  306 (377)
T ss_dssp             EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBC
T ss_pred             cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccc
Confidence            999999999876    77889999999999999999999999877766 66554 11 000                   


Q ss_pred             ---------------ee----------------eccccceEEEEEEeCCCC----EEEEeeCCCeEEEeec
Q psy226          370 ---------------KT----------------LEAHSHFVTSLDFHRAHP----YVVTGSVDKTVKVWEC  405 (406)
Q Consensus       370 ---------------~~----------------l~~h~~~v~~l~~~~~~~----~l~sgs~Dg~v~iw~~  405 (406)
                                     ..                ...|...|+++++.+...    .|+|||.||.|++||+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          307 EGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                           00                113889999999766543    6999999999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-44  Score=341.87  Aligned_cols=283  Identities=16%  Similarity=0.283  Sum_probs=256.5

Q ss_pred             eccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEc----CCCc------EEEEecc----------cccCeeeEEECCCC
Q psy226          102 LSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDY----ETGE------YERALHG----------HLDSVQDIAFDQSG  160 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~-~latgs~dg~v~vwd~----~~~~------~~~~~~~----------h~~~V~~l~~~~~g  160 (406)
                      ...|.++|++++|+|+++ +||+|+.||.|++||+    .+++      ....+..          |.+.|++++|+|++
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            445779999999999999 9999999999999999    8887      4444443          67899999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCcc------
Q psy226          161 KLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREW------  234 (406)
Q Consensus       161 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~------  234 (406)
                      ++|++|+.|+.|++|| .+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.++..+..+..+...      
T Consensus       121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  199 (425)
T 1r5m_A          121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA  199 (425)
T ss_dssp             SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred             CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence            9999999999999999 667888899999999999999999999999999999999999999999998888776      


Q ss_pred             ---------EEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCC
Q psy226          235 ---------VRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGP  305 (406)
Q Consensus       235 ---------v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (406)
                               +.+++|+|++ .+++++.|+.|++||+.+......+..|...|.+++|+|                  ++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~  260 (425)
T 1r5m_A          200 ENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND------------------TNK  260 (425)
T ss_dssp             ------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET------------------TTT
T ss_pred             ccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC------------------CCC
Confidence                     8999999875 588999999999999999988889999999999999998                  467


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEe
Q psy226          306 YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFH  385 (406)
Q Consensus       306 ~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~  385 (406)
                      +|++++.|+.|++||+++++.+..+.+|...|.+++|+|++ +|++++.|+.|++||+.+++.+..+..|...|.+++|+
T Consensus       261 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  339 (425)
T 1r5m_A          261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS  339 (425)
T ss_dssp             EEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence            89999999999999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             CCCCEEEEeeCCCeEEEeec
Q psy226          386 RAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       386 ~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |++++|++|+.||.|++||+
T Consensus       340 ~~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          340 QDGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEEC
T ss_pred             CCCCEEEEEECCCeEEEEEC
Confidence            99999999999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-45  Score=349.57  Aligned_cols=286  Identities=16%  Similarity=0.255  Sum_probs=256.4

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----CcEEEEecccccCeeeEEECCC-CCEEEEEeCCCcEEEEeC
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYET----GEYERALHGHLDSVQDIAFDQS-GKLLVSCSADMSLKLWDM  177 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~----~~~~~~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~vwd~  177 (406)
                      ..|..+|++++|+|++.+|++|+.||.|++||+.+    .+....+.+|...|.+++|+|+ +.+|++|+.|+.|++||+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            36889999999999999999999999999999988    4578888999999999999998 899999999999999999


Q ss_pred             CCCe------EE---EEEecCCcceEEEEEecC-CCEEEEEeCCCcEEEEEcCCCeEEEEeecC------CccEEEEEEC
Q psy226          178 STYQ------CL---KTMQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVATGYCVKTLTGH------REWVRQIKVS  241 (406)
Q Consensus       178 ~~~~------~~---~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~------~~~v~~l~~~  241 (406)
                      .+++      ..   ..+.+|...|.+++|+|+ +.++++++.|+.|++||++++..+..+..|      ...|.+++|+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  223 (416)
T 2pm9_A          144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH  223 (416)
T ss_dssp             TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred             CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence            8775      22   233678999999999999 789999999999999999999999888876      7889999999


Q ss_pred             CCC-CEEEEEeCCC---eEEEEeCCCc-cceeEEe-cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCc
Q psy226          242 PDG-TLLASCSNDH---TARVWSLATK-ETKAELR-GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT  315 (406)
Q Consensus       242 ~~~-~~l~s~~~d~---~v~vwd~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  315 (406)
                      |++ .++++++.|+   .|++||+++. .....+. +|...|.+++|+|.                 ++.+|++++.|+.
T Consensus       224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------~~~~l~s~~~dg~  286 (416)
T 2pm9_A          224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ-----------------DEHLLLSSGRDNT  286 (416)
T ss_dssp             SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS-----------------CSSCEEEEESSSE
T ss_pred             CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC-----------------CCCeEEEEeCCCC
Confidence            997 6899999999   9999999986 5667777 89999999999982                 3678999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCcCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCccceeec---------------------
Q psy226          316 IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGG-KYLVSCGDDKTLRVWDTANKRNMKTLE---------------------  373 (406)
Q Consensus       316 i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g-~~l~sgs~d~~i~vwd~~~~~~~~~l~---------------------  373 (406)
                      |++||+++++++..+.+|...|.+++|+|++ .+|++++.|+.|++||+.+........                     
T Consensus       287 v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (416)
T 2pm9_A          287 VLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREE  366 (416)
T ss_dssp             EEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------
T ss_pred             EEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccc
Confidence            9999999999999999999999999999999 899999999999999998765433221                     


Q ss_pred             --------------cccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          374 --------------AHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       374 --------------~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                                    .|...+.+++|+|+|++||+|+.||+|+||++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~  412 (416)
T 2pm9_A          367 SKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP  412 (416)
T ss_dssp             CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred             cccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence                          16667889999999999999999999999996

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-43  Score=335.52  Aligned_cols=287  Identities=22%  Similarity=0.350  Sum_probs=254.6

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc-cccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHG-HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      +...+|...+.+..+++++..+++++.||.|++||..+++....+.. |...|.+++|+|++++|++|+.||.|++||+.
T Consensus        85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           85 LDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             EECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            44568877655544444456788899999999999999998877765 88999999999999999999999999999999


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC-CCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA-TGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTAR  257 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~  257 (406)
                      +++.+..+.+|...|.+++|+  ++++++|+.|+.|++||++ .+..+..+.+|...|.+++|+|++.+|++|+.|+.|+
T Consensus       165 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~  242 (401)
T 4aez_A          165 SQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ  242 (401)
T ss_dssp             TCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence            999999999999999999994  5799999999999999998 5677888999999999999999999999999999999


Q ss_pred             EEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe--CCCcEEEEECCCCeEEEEEeCCCc
Q psy226          258 VWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS--RDKTIKLWDVGSGSLLFTLIGHDN  335 (406)
Q Consensus       258 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~lwd~~~~~~~~~~~~h~~  335 (406)
                      +||+++......+..|...|.+++|+|.                 +..++++|+  .|+.|++||+.+++++..+. |..
T Consensus       243 iwd~~~~~~~~~~~~~~~~v~~~~~~p~-----------------~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~  304 (401)
T 4aez_A          243 IWDARSSIPKFTKTNHNAAVKAVAWCPW-----------------QSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGS  304 (401)
T ss_dssp             EEETTCSSEEEEECCCSSCCCEEEECTT-----------------STTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSS
T ss_pred             EccCCCCCccEEecCCcceEEEEEECCC-----------------CCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCC
Confidence            9999999888899999999999999984                 345677765  79999999999999988886 567


Q ss_pred             CEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCccce--eeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          336 WVRGVTFHPGGKYLVSC--GDDKTLRVWDTANKRNMK--TLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sg--s~d~~i~vwd~~~~~~~~--~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      .|.+++|+|++++|+++  +.||.|++||+.+++...  .+.+|...|.+++|+|++++|++|+.||.|++|++.
T Consensus       305 ~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred             cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            89999999999999994  489999999998865443  467899999999999999999999999999999973

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.5e-44  Score=345.78  Aligned_cols=286  Identities=19%  Similarity=0.286  Sum_probs=240.1

Q ss_pred             EeccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcEE--EEecccccCeeeEEECC-CCCEEEEEeCCCcEEEEe
Q psy226          101 ALSGHRSPVIKVIFHPV-FSLMASCSEDATIRLWDYETGEYE--RALHGHLDSVQDIAFDQ-SGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~-~~~latgs~dg~v~vwd~~~~~~~--~~~~~h~~~V~~l~~~~-~g~~l~sgs~d~~i~vwd  176 (406)
                      ...+|...|+||+|||. ..+||+|+.||+|+|||+.+++..  ..+.+|.+.|++|+|+| ++.+|++|+.|++|++||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            46789999999999995 679999999999999999887643  34568999999999998 689999999999999999


Q ss_pred             CCCCeEEEEEecC--CcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCC-EEEEEeCC
Q psy226          177 MSTYQCLKTMQGH--DHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT-LLASCSND  253 (406)
Q Consensus       177 ~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~d  253 (406)
                      +.+.........+  ...+.+++|+|++.+|++|+.||+|++||++ +..+..+.+|...|.+++|+|++. +|++|+.|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d  272 (435)
T 4e54_B          194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVD  272 (435)
T ss_dssp             TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred             ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence            9876543333333  3457899999999999999999999999986 456778889999999999999876 78899999


Q ss_pred             CeEEEEeCCCcccee---EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy226          254 HTARVWSLATKETKA---ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL  330 (406)
Q Consensus       254 ~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~  330 (406)
                      ++|++||+++.....   ...+|...|.+++|+|                  ++.+|++++.|+.|++||+.++.+...+
T Consensus       273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp------------------dg~~l~s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP------------------DGARLLTTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT------------------TSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred             ceeeEEecccccccceEEEeeeccccccceeECC------------------CCCeeEEEcCCCEEEEEECCCCccceEE
Confidence            999999998765443   3357899999999998                  4789999999999999999999888887


Q ss_pred             eCCCc------CEEEEEEcCCCCEEEEEe------------CCCeEEEEeCCCCccceee-ccccceEEEE-EEeCCCCE
Q psy226          331 IGHDN------WVRGVTFHPGGKYLVSCG------------DDKTLRVWDTANKRNMKTL-EAHSHFVTSL-DFHRAHPY  390 (406)
Q Consensus       331 ~~h~~------~v~~l~~s~~g~~l~sgs------------~d~~i~vwd~~~~~~~~~l-~~h~~~v~~l-~~~~~~~~  390 (406)
                      ..|..      .+....|+|++.++++++            .++.|++||..+++.+..+ ..|...|.++ +|+|++.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~  414 (435)
T 4e54_B          335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT  414 (435)
T ss_dssp             CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred             ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence            77653      234557888887777764            3468999999999988776 4677788887 69999999


Q ss_pred             EEEeeCCCeEEEeecC
Q psy226          391 VVTGSVDKTVKVWECR  406 (406)
Q Consensus       391 l~sgs~Dg~v~iw~~~  406 (406)
                      ||+|+ |++|+||+++
T Consensus       415 lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          415 LASAM-GYHILIWSQQ  429 (435)
T ss_dssp             EEEEC-SSEEEECCCC
T ss_pred             EEEEc-CCcEEEEECC
Confidence            99886 8899999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.7e-43  Score=325.05  Aligned_cols=245  Identities=25%  Similarity=0.422  Sum_probs=227.1

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEE
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG----EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKL  174 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~----~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~v  174 (406)
                      ...+..|..+|.+++|+|++++|++|+.|+.|++||+.++    +....+.+|.+.|.++.|++++. +++++.|++|++
T Consensus        90 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~  168 (340)
T 1got_B           90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCAL  168 (340)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred             ceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEE
Confidence            4456789999999999999999999999999999999875    35667889999999999998765 889999999999


Q ss_pred             EeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          175 WDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       175 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      ||+.+++++..+.+|...|.+++|+|++.++++|+.|++|++||++++.+...+.+|...|.+++|+|++++|++|+.|+
T Consensus       169 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~  248 (340)
T 1got_B          169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA  248 (340)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCccceeEEec--CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy226          255 TARVWSLATKETKAELRG--HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~  332 (406)
                      +|++||+++......+..  +...|.+++|+|                  ++.++++|+.|+.|++||+.++..+..+.+
T Consensus       249 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~------------------~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~  310 (340)
T 1got_B          249 TCRLFDLRADQELMTYSHDNIICGITSVSFSK------------------SGRLLLAGYDDFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             CEEEEETTTTEEEEEECCTTCCSCEEEEEECT------------------TSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEECCCCcEEEEEccCCcccceEEEEECC------------------CCCEEEEECCCCeEEEEEcccCcEeeEeec
Confidence            999999998776665543  234799999998                  478999999999999999999999999999


Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy226          333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWD  362 (406)
Q Consensus       333 h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd  362 (406)
                      |...|.+++|+|+|.+|++||.|++|+|||
T Consensus       311 h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999999999999997

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-45  Score=357.76  Aligned_cols=283  Identities=10%  Similarity=0.102  Sum_probs=233.1

Q ss_pred             CCCCeEEEEEcCCC---------CEEEE-------------------EeCCCcEEEEEcCCCcEE----EEecccccCee
Q psy226          105 HRSPVIKVIFHPVF---------SLMAS-------------------CSEDATIRLWDYETGEYE----RALHGHLDSVQ  152 (406)
Q Consensus       105 h~~~V~~v~~~p~~---------~~lat-------------------gs~dg~v~vwd~~~~~~~----~~~~~h~~~V~  152 (406)
                      +.++|.+|+|+|++         .+||+                   |+.|++|+|||+.+++..    ..+.+|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            67788999998876         55555                   567899999999887642    34667889999


Q ss_pred             eEEECCC------CCEEEEEeCCCcEEEEeCCCCeE-----------EEEEecCCcceEEEEEecCCCEEEEEeCCCcEE
Q psy226          153 DIAFDQS------GKLLVSCSADMSLKLWDMSTYQC-----------LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIK  215 (406)
Q Consensus       153 ~l~~~~~------g~~l~sgs~d~~i~vwd~~~~~~-----------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~  215 (406)
                      +++|+|+      +.+||+|+.||+|++||+.++..           ...+.+|...|.+++|+|+ ..|++|+.||+|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence            9999996      57999999999999999976532           2467889999999999986 5899999999999


Q ss_pred             EEEcCCCe-EEEEeecCCccEEEE--EECCCC-CEEEEEeCCCeEEEEeCCCccceeEEecCCc--eEEEEEeCCCCCcc
Q psy226          216 MWEVATGY-CVKTLTGHREWVRQI--KVSPDG-TLLASCSNDHTARVWSLATKETKAELRGHDH--TVECVAWAPGVASE  289 (406)
Q Consensus       216 iwd~~~~~-~~~~~~~~~~~v~~l--~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~  289 (406)
                      +||++++. ....+.+|...|.++  +|+|+| .+|+||+.|++|++||+++.+....+.+|..  .|.+++|+|+    
T Consensus       291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~----  366 (524)
T 2j04_B          291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ----  366 (524)
T ss_dssp             EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT----
T ss_pred             EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCC----
Confidence            99998764 456688999999999  578888 8999999999999999998877777777754  4788999983    


Q ss_pred             ccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---
Q psy226          290 SISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK---  366 (406)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~---  366 (406)
                                    +..+++++.|++|++||++++.++..+.+|.+.|.+|+|+|+|++|++|+.||+|++||...+   
T Consensus       367 --------------~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~  432 (524)
T 2j04_B          367 --------------IYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLH  432 (524)
T ss_dssp             --------------TTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTT
T ss_pred             --------------cCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcc
Confidence                          567999999999999999999988889999999999999999999999999999999985321   


Q ss_pred             -----------------------------------------ccceeeccccceEEEEEEeCCCC---EEEEeeCCCeEEE
Q psy226          367 -----------------------------------------RNMKTLEAHSHFVTSLDFHRAHP---YVVTGSVDKTVKV  402 (406)
Q Consensus       367 -----------------------------------------~~~~~l~~h~~~v~~l~~~~~~~---~l~sgs~Dg~v~i  402 (406)
                                                               ..+.++.+|...|.+|+|+|+++   +||+|+.||+|+|
T Consensus       433 ~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl  512 (524)
T 2j04_B          433 GIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL  512 (524)
T ss_dssp             CC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred             ccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence                                                     11223445777899999999965   9999999999999


Q ss_pred             eecC
Q psy226          403 WECR  406 (406)
Q Consensus       403 w~~~  406 (406)
                      |+++
T Consensus       513 w~l~  516 (524)
T 2j04_B          513 EYLS  516 (524)
T ss_dssp             EECS
T ss_pred             EEcc
Confidence            9974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7e-43  Score=336.60  Aligned_cols=283  Identities=27%  Similarity=0.513  Sum_probs=255.6

Q ss_pred             CceEEeccCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEE
Q psy226           97 PEKFALSGHRSPV-IKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW  175 (406)
Q Consensus        97 ~~~~~l~~h~~~V-~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vw  175 (406)
                      +....+.+|..+| .++.+  ++++|++|+.||+|++||+.+++....+.+|.+.|.+++|++++ +|++|+.||+|++|
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW  188 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence            3456789999885 56666  56799999999999999999999999999999999999999988 99999999999999


Q ss_pred             eCCCCeEEEEEecCCcceEEEEEec--CCCEEEEEeCCCcEEEEEcCCCe-----------------------EEEEeec
Q psy226          176 DMSTYQCLKTMQGHDHNVTGVAFLP--NSDFVLSASRDKTIKMWEVATGY-----------------------CVKTLTG  230 (406)
Q Consensus       176 d~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~iwd~~~~~-----------------------~~~~~~~  230 (406)
                      |+.+++++..+.+|...|.+++|+|  ++.++++|+.|++|++||+.++.                       .+..+.+
T Consensus       189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            9999999999999999999999995  67899999999999999998764                       2556788


Q ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEE
Q psy226          231 HREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATG  310 (406)
Q Consensus       231 ~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  310 (406)
                      |...+.++  ++++.++++|+.|+.|++||+.+.+.+..+.+|...|.++.|+|                  ++.++++|
T Consensus       269 ~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~~l~sg  328 (464)
T 3v7d_B          269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH------------------ERKRCISA  328 (464)
T ss_dssp             CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET------------------TTTEEEEE
T ss_pred             ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC------------------CCCEEEEE
Confidence            98888876  57899999999999999999999999999999999999999998                  46789999


Q ss_pred             eCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCE
Q psy226          311 SRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPY  390 (406)
Q Consensus       311 ~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~  390 (406)
                      +.|+.|++||+++++++..+.+|...|.+++|+  +++|++|+.||.|++||+.++....... |...+..++|+|++.+
T Consensus       329 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~  405 (464)
T 3v7d_B          329 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNI  405 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSE
T ss_pred             eCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCE
Confidence            999999999999999999999999999999997  5799999999999999999877655543 5667888999999999


Q ss_pred             EEEeeCCCeEEEeecC
Q psy226          391 VVTGSVDKTVKVWECR  406 (406)
Q Consensus       391 l~sgs~Dg~v~iw~~~  406 (406)
                      |++|+ ||.|++||++
T Consensus       406 l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          406 LVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             EEEEE-TTEEEEEETT
T ss_pred             EEEec-CCeEEEEECC
Confidence            99998 9999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8e-44  Score=338.44  Aligned_cols=298  Identities=19%  Similarity=0.213  Sum_probs=255.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      ..+++++|+|++++|++|+.||.|++||+.+++....+..| ..+....|++++++|++|+.|+.|++||+.+++....+
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  135 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID  135 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence            34558999999999999999999999999887765555555 44555578999999999999999999999999988888


Q ss_pred             ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc
Q psy226          187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET  266 (406)
Q Consensus       187 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~  266 (406)
                      .+|...|.+++|+|++++|++|+.|++|++||+.++..+..+.+|...|.+++|+|++.+|++++.|+.|++||+++++.
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  215 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT  215 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             eeEEec---CCceEEEEEeCCCCCccccc---cccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-CCCcCEEE
Q psy226          267 KAELRG---HDHTVECVAWAPGVASESIS---EAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI-GHDNWVRG  339 (406)
Q Consensus       267 ~~~~~~---~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~-~h~~~v~~  339 (406)
                      ...+..   |...+.++.+.|........   .........+++.++++|+.||.|++||+++++.+..+. +|...|.+
T Consensus       216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  295 (420)
T 3vl1_A          216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS  295 (420)
T ss_dssp             EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred             eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence            888774   56788899887653321111   111122334578899999999999999999998877765 48889999


Q ss_pred             EEEcCCCC-EEEEEeCCCeEEEEeCCCCcc-ceeecc-ccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          340 VTFHPGGK-YLVSCGDDKTLRVWDTANKRN-MKTLEA-HSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       340 l~~s~~g~-~l~sgs~d~~i~vwd~~~~~~-~~~l~~-h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ++|+|+++ +|++|+.||.|++||+.+++. +..+.. |...|.++.| +++.+|++|+.||.|++|++.
T Consensus       296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~  364 (420)
T 3vl1_A          296 LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIIS  364 (420)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEEC
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEecc
Confidence            99999999 999999999999999998754 777776 6777888865 577899999999999999963

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.2e-43  Score=376.64  Aligned_cols=310  Identities=27%  Similarity=0.491  Sum_probs=264.3

Q ss_pred             CceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226           97 PEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus        97 ~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      .....+.+|.++|++++|+|++++||+|+.||+|++||..+++....+.+|...|.+++|+|+|++|++|+.|++|++||
T Consensus       606 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD  685 (1249)
T ss_dssp             CCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCcceEEEEEec--CCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          177 MSTYQCLKTMQGHDHNVTGVAFLP--NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      +.+++++..+.+|...|.+++|+|  ++.++++|+.|++|++||+.++.++..+.+|...|.+++|+|+++++++|+.||
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg  765 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG  765 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCC
Confidence            999999999999999999999999  455899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCccceeEEec-------------CCceEEEEEeCCCCCccccc-----------------c-------ccCC
Q psy226          255 TARVWSLATKETKAELRG-------------HDHTVECVAWAPGVASESIS-----------------E-------AAGR  297 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~-----------------~-------~~~~  297 (406)
                      .|++||+.+......+..             +...+.+++|+|+.......                 .       ....
T Consensus       766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~  845 (1249)
T 3sfz_A          766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY  845 (1249)
T ss_dssp             EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred             eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence            999999987755444321             11234455555542111000                 0       0000


Q ss_pred             CCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-------------
Q psy226          298 PPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA-------------  364 (406)
Q Consensus       298 ~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~-------------  364 (406)
                      ....+++.++++++.|+.|++||+.++..+..+.+|...|.+++|+|+|++|++++.||.|++||+.             
T Consensus       846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~  925 (1249)
T 3sfz_A          846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE  925 (1249)
T ss_dssp             EEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccce
Confidence            0112357899999999999999999999999999999999999999999999999999999999843             


Q ss_pred             ------------------------------------------------------------------CCccceeeccccce
Q psy226          365 ------------------------------------------------------------------NKRNMKTLEAHSHF  378 (406)
Q Consensus       365 ------------------------------------------------------------------~~~~~~~l~~h~~~  378 (406)
                                                                                        +++.+..+.+|...
T Consensus       926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~ 1005 (1249)
T 3sfz_A          926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1005 (1249)
T ss_dssp             EEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC
T ss_pred             eeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc
Confidence                                                                              22333445678889


Q ss_pred             EEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          379 VTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       379 v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      |++++|+|++++|++|+.||.|++||+.
T Consensus      1006 v~~l~~s~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A         1006 VRHIQFTADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp             CCCEEECSSSSCEEEECSSSBEEEEETT
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence            9999999999999999999999999963

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-45  Score=346.62  Aligned_cols=285  Identities=19%  Similarity=0.333  Sum_probs=255.0

Q ss_pred             CCCCeEEEEEcCCCC-EEEEE----------eCCCcEEEEEcCCCcEE--EEecccccCeeeEEECCCCCEEEEEeCCCc
Q psy226          105 HRSPVIKVIFHPVFS-LMASC----------SEDATIRLWDYETGEYE--RALHGHLDSVQDIAFDQSGKLLVSCSADMS  171 (406)
Q Consensus       105 h~~~V~~v~~~p~~~-~latg----------s~dg~v~vwd~~~~~~~--~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~  171 (406)
                      +..+|.+++|+|++. +||+|          +.||.|++||+.+++..  .....|...|.+++|+|++.+|++|+.|+.
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence            445788999999987 99999          89999999999987522  122358899999999999999999999999


Q ss_pred             EEEEeCCC----CeEEEEEecCCcceEEEEEecC-CCEEEEEeCCCcEEEEEcCCCe------EEE---EeecCCccEEE
Q psy226          172 LKLWDMST----YQCLKTMQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVATGY------CVK---TLTGHREWVRQ  237 (406)
Q Consensus       172 i~vwd~~~----~~~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~iwd~~~~~------~~~---~~~~~~~~v~~  237 (406)
                      |++||+.+    .+.+..+.+|...|.+++|+|+ +++|++++.|++|++||+.++.      ...   .+.+|...|.+
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVIS  170 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCE
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeE
Confidence            99999987    4578889999999999999998 8899999999999999998876      332   24678999999


Q ss_pred             EEECCC-CCEEEEEeCCCeEEEEeCCCccceeEEecC------CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEE
Q psy226          238 IKVSPD-GTLLASCSNDHTARVWSLATKETKAELRGH------DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATG  310 (406)
Q Consensus       238 l~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  310 (406)
                      ++|+|+ +.+|++++.|+.|++||+++.+....+..+      ...+.+++|+|+                 +..+++++
T Consensus       171 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~~l~~~  233 (416)
T 2pm9_A          171 LAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK-----------------NSTRVATA  233 (416)
T ss_dssp             EEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS-----------------CTTEEEEE
T ss_pred             EEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC-----------------CCCEEEEE
Confidence            999999 789999999999999999998888888776      788999999984                 23589999


Q ss_pred             eCCC---cEEEEECCCC-eEEEEEe-CCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEE
Q psy226          311 SRDK---TIKLWDVGSG-SLLFTLI-GHDNWVRGVTFHP-GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF  384 (406)
Q Consensus       311 ~~d~---~i~lwd~~~~-~~~~~~~-~h~~~v~~l~~s~-~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~  384 (406)
                      +.|+   .|++||++++ .++..+. +|...|.+++|+| ++++|++++.|+.|++||+.+++.+.++..|...|.+++|
T Consensus       234 ~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~  313 (416)
T 2pm9_A          234 TGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF  313 (416)
T ss_dssp             ECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEE
T ss_pred             ECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEE
Confidence            9999   9999999986 6677777 8999999999999 9999999999999999999999999999999999999999


Q ss_pred             eCCC-CEEEEeeCCCeEEEeecC
Q psy226          385 HRAH-PYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       385 ~~~~-~~l~sgs~Dg~v~iw~~~  406 (406)
                      +|++ .+|++++.||.|++|++.
T Consensus       314 s~~~~~~l~s~~~d~~i~iw~~~  336 (416)
T 2pm9_A          314 APEAPDLFACASFDNKIEVQTLQ  336 (416)
T ss_dssp             CTTCTTEEEECCSSSEEEEEESC
T ss_pred             CCCCCCEEEEEecCCcEEEEEcc
Confidence            9999 899999999999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.9e-43  Score=319.58  Aligned_cols=259  Identities=24%  Similarity=0.439  Sum_probs=218.5

Q ss_pred             EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEecCCcceEEEEEecC--CCEEEEEeCCCcEEEE
Q psy226          142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST--YQCLKTMQGHDHNVTGVAFLPN--SDFVLSASRDKTIKMW  217 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~iw  217 (406)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|++||+.+  .+++.++.+|..+|.+++|+|+  +++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45678999999999999999999999999999999974  4677899999999999999863  8899999999999999


Q ss_pred             EcCCCe--EEEEeecCCccEEEEEECCC--CCEEEEEeCCCeEEEEeCCCcc--ceeEEecCCceEEEEEeCCCCCcccc
Q psy226          218 EVATGY--CVKTLTGHREWVRQIKVSPD--GTLLASCSNDHTARVWSLATKE--TKAELRGHDHTVECVAWAPGVASESI  291 (406)
Q Consensus       218 d~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~  291 (406)
                      |+.++.  .+..+.+|...|.+++|+|+  |.+|++|+.|++|++||+++..  ....+.+|...|.+++|+|......-
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998874  56678889999999999997  8999999999999999998653  24567899999999999986321100


Q ss_pred             ccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe----EEEEEeCCCcCEEEEEEcCCC---CEEEEEeCCCeEEEEeCC
Q psy226          292 SEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS----LLFTLIGHDNWVRGVTFHPGG---KYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       292 ~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~----~~~~~~~h~~~v~~l~~s~~g---~~l~sgs~d~~i~vwd~~  364 (406)
                           .......+.+|++|+.|++|++||++++.    +...+.+|...|.+++|+|++   .+|++|+.|++|+|||+.
T Consensus       163 -----~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          163 -----EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             ------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             -----cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                 00001135689999999999999998765    667889999999999999985   899999999999999987


Q ss_pred             CCcc---ceee--ccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          365 NKRN---MKTL--EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       365 ~~~~---~~~l--~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +...   ...+  ..|...|.+++|+|++++||+|+.||+|++|+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence            6431   1223  467888999999999999999999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.1e-42  Score=311.96  Aligned_cols=296  Identities=26%  Similarity=0.443  Sum_probs=250.3

Q ss_pred             cCCCCCCceEE-eccCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec--ccccCeeeEEECCCCCEEEE
Q psy226           91 EWIPRAPEKFA-LSGHRS--PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH--GHLDSVQDIAFDQSGKLLVS  165 (406)
Q Consensus        91 ~~~~~~~~~~~-l~~h~~--~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~g~~l~s  165 (406)
                      ..+|..|++.. .++..+  ..++|+|||++ +||+|. |++|+|||+.+++..+.+.  +|...|++++|+|+|++|++
T Consensus         7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~s   84 (318)
T 4ggc_A            7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV   84 (318)
T ss_dssp             CCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE
T ss_pred             cccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEE
Confidence            45666666542 123332  35789999885 777765 9999999999999887664  67788999999999999999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC-eEEEEeecCCccEEEEEECCCC
Q psy226          166 CSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSPDG  244 (406)
Q Consensus       166 gs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~  244 (406)
                      |+.|++|++||+.+++++..+.+|...+.++.+  ++..+++|+.++.+++|+..++ ..+..+.+|...+..+.+++++
T Consensus        85 gs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (318)
T 4ggc_A           85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  162 (318)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             EECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence            999999999999999999999999988877555  5679999999999999998765 4667788999999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCccc----eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEE
Q psy226          245 TLLASCSNDHTARVWSLATKET----KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWD  320 (406)
Q Consensus       245 ~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd  320 (406)
                      +++++++.|++|++||+++++.    ......+...|.++.+.|...               ....+++++.++.|++||
T Consensus       163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~~~~~~~~~~~~i~lwd  227 (318)
T 4ggc_A          163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS---------------NVLATGGGTSDRHIRIWN  227 (318)
T ss_dssp             SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTST---------------TEEEEEECTTTCEEEEEE
T ss_pred             CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCC---------------cEEEEEecCCCCEEEEEe
Confidence            9999999999999999987653    345567788899999987421               112346778899999999


Q ss_pred             CCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCC
Q psy226          321 VGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCG--DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDK  398 (406)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs--~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg  398 (406)
                      ........... +...+..+.|+|++..+++++  .|+.|+|||+.+++.+.++.+|.+.|++|+|+|++++|||||.||
T Consensus       228 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~  306 (318)
T 4ggc_A          228 VCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE  306 (318)
T ss_dssp             TTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTT
T ss_pred             ccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCC
Confidence            99888766544 666799999999999887765  799999999999999999999999999999999999999999999


Q ss_pred             eEEEeecC
Q psy226          399 TVKVWECR  406 (406)
Q Consensus       399 ~v~iw~~~  406 (406)
                      +|+|||+.
T Consensus       307 ~v~iWd~~  314 (318)
T 4ggc_A          307 TLRLWRCF  314 (318)
T ss_dssp             EEEEECCS
T ss_pred             eEEEEECC
Confidence            99999973

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.1e-43  Score=360.33  Aligned_cols=290  Identities=27%  Similarity=0.420  Sum_probs=268.9

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ...+.+|.++|++++|||++++||+|+.||.|+|||+.+++....+.+|..+|.+++|+|++++|++|+.||.|++||+.
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC-eEEEEeecCCccEEEEEECC-CCCEEEEEeCCCeE
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHTA  256 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~v  256 (406)
                      +++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++ .....+.+|...|.+++|+| ++..+++++.||.|
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v  165 (814)
T 3mkq_A           86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (814)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence            99999999999999999999999999999999999999999987 67788899999999999999 89999999999999


Q ss_pred             EEEeCCCccceeEEecCC-ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc
Q psy226          257 RVWSLATKETKAELRGHD-HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN  335 (406)
Q Consensus       257 ~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~  335 (406)
                      ++||+.+......+..+. ..+.++.|+|.                +++.++++++.|+.|++||+.+++++..+.+|..
T Consensus       166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~----------------~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  229 (814)
T 3mkq_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPL----------------PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS  229 (814)
T ss_dssp             EEEETTCSSCSEEEECCCTTCCCEEEECCS----------------TTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEEECCCCcceeEEecCCCCCEEEEEEEEC----------------CCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            999998887777776655 88999999883                2467899999999999999999999999999999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCC--EEEEeeCCCeEEEeec
Q psy226          336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP--YVVTGSVDKTVKVWEC  405 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~--~l~sgs~Dg~v~iw~~  405 (406)
                      .|.+++|+|+|++|++|+.||.|++||..+++.+..+..|...+.+++|+|++.  ++++|+ |+.+.+|++
T Consensus       230 ~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~  300 (814)
T 3mkq_A          230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSL  300 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEc
Confidence            999999999999999999999999999999999999999999999999999987  466555 666777764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7.4e-44  Score=332.88  Aligned_cols=279  Identities=15%  Similarity=0.149  Sum_probs=227.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCC-------cEEEEEcCCCcE----------EEEecccccCeeeEEECCCCCEEEEE--
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDA-------TIRLWDYETGEY----------ERALHGHLDSVQDIAFDQSGKLLVSC--  166 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg-------~v~vwd~~~~~~----------~~~~~~h~~~V~~l~~~~~g~~l~sg--  166 (406)
                      ..||++++|+|++++||+|+.|.       .|++|++..+..          ...+.+|.+.|.+++++  ++.+++|  
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            46999999999999999998654       499999876531          23467888899988875  4566665  


Q ss_pred             ---------eCCCcEEEEeCCCCeE----EEEE-----ecCCcceEEEEEecCCCEEEEE--eCCCcEEEEEcCCCeEEE
Q psy226          167 ---------SADMSLKLWDMSTYQC----LKTM-----QGHDHNVTGVAFLPNSDFVLSA--SRDKTIKMWEVATGYCVK  226 (406)
Q Consensus       167 ---------s~d~~i~vwd~~~~~~----~~~~-----~~h~~~v~~~~~~p~~~~l~s~--s~d~~i~iwd~~~~~~~~  226 (406)
                               +.|+++++|++.+...    ....     ..++..+.+++|+|||++++++  +.|++|++||+.++.++.
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence                     4577899998764321    1111     1234568899999999987654  478999999999999988


Q ss_pred             EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCcccee--EEecCCceEEEEEeCCCCCccccccccCCCCCCCCC
Q psy226          227 TLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKA--ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGG  304 (406)
Q Consensus       227 ~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (406)
                      .+. |...|.+++|+|+|+++++++.|+ +++|+..++....  ....|...|.+++|+|                  ++
T Consensus       172 ~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp------------------dg  231 (365)
T 4h5i_A          172 EIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIA------------------DD  231 (365)
T ss_dssp             EEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEE------------------TT
T ss_pred             EeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcC------------------CC
Confidence            885 677899999999999999998655 5566665555443  3456888999999998                  47


Q ss_pred             CEEEEEeCCC----cEEEEECCCCeE----EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee-ccc
Q psy226          305 PYLATGSRDK----TIKLWDVGSGSL----LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL-EAH  375 (406)
Q Consensus       305 ~~l~s~~~d~----~i~lwd~~~~~~----~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l-~~h  375 (406)
                      .++++++.|+    .+++||+..+..    ...+.+|...|++++|+|+|++||+|+.|++|+|||+.+++++.++ .+|
T Consensus       232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH  311 (365)
T 4h5i_A          232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH  311 (365)
T ss_dssp             EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred             CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence            7899999887    688999876653    3567889999999999999999999999999999999999998875 789


Q ss_pred             cceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          376 SHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       376 ~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ...|++|+|+|++++|||||.|++|+||++.
T Consensus       312 ~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          312 SFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             cCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            9999999999999999999999999999973

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6e-43  Score=317.45  Aligned_cols=250  Identities=22%  Similarity=0.384  Sum_probs=218.4

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--cEEEEecccccCeeeEEECCC--CCEEEEEeCCCcEEEE
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG--EYERALHGHLDSVQDIAFDQS--GKLLVSCSADMSLKLW  175 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~--~~~~~~~~h~~~V~~l~~~~~--g~~l~sgs~d~~i~vw  175 (406)
                      ..+.+|.++|++++|+|++++||+|+.|++|+|||+.++  +....+.+|.++|.+++|+++  |++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            356799999999999999999999999999999999753  567889999999999999864  8999999999999999


Q ss_pred             eCCCCe--EEEEEecCCcceEEEEEecC--CCEEEEEeCCCcEEEEEcCCCe--EEEEeecCCccEEEEEECCC------
Q psy226          176 DMSTYQ--CLKTMQGHDHNVTGVAFLPN--SDFVLSASRDKTIKMWEVATGY--CVKTLTGHREWVRQIKVSPD------  243 (406)
Q Consensus       176 d~~~~~--~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~------  243 (406)
                      |+.+++  .+..+.+|...|.+++|+|+  +.+|++|+.|++|++||++++.  ....+.+|...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998763  56678889999999999997  7899999999999999998763  24567899999999999997      


Q ss_pred             -------CCEEEEEeCCCeEEEEeCCCcc----ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC
Q psy226          244 -------GTLLASCSNDHTARVWSLATKE----TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR  312 (406)
Q Consensus       244 -------~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  312 (406)
                             +++|++|+.|++|++||+++..    ....+.+|...|.+++|+|+..               .+.+|++|+.
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~---------------~~~~las~s~  227 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---------------LRSYMASVSQ  227 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS---------------SSEEEEEEET
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC---------------CceEEEEEEC
Confidence                   5799999999999999998765    4567889999999999998420               1468999999


Q ss_pred             CCcEEEEECCCCe---EEEEE--eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          313 DKTIKLWDVGSGS---LLFTL--IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       313 d~~i~lwd~~~~~---~~~~~--~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      |++|++||+.++.   ....+  .+|...|.+++|+|+|++|++++.|++|+||+..
T Consensus       228 D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            9999999987642   22233  4688899999999999999999999999999976

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1e-42  Score=333.01  Aligned_cols=272  Identities=31%  Similarity=0.548  Sum_probs=250.5

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC  182 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~  182 (406)
                      .+|..+|+|+.+  ++++|++|+.||+|++||..+++....+.+|...|.+++|  ++++|++|+.||+|++||+.++++
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence            467788998877  7899999999999999999999999999999999999999  788999999999999999999999


Q ss_pred             EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEE---EEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Q psy226          183 LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV---KTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW  259 (406)
Q Consensus       183 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vw  259 (406)
                      +..+.+|...|.+++|+  ++++++|+.|++|++||+.++...   ..+.+|...|.++++  +++++++|+.||.|++|
T Consensus       206 ~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw  281 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW  281 (435)
T ss_dssp             EEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             EEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence            99999999999999996  469999999999999999887654   677899999999999  78899999999999999


Q ss_pred             eCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEE
Q psy226          260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRG  339 (406)
Q Consensus       260 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~  339 (406)
                      |+++++.+..+.+|...|.++.+.                    +.++++|+.|+.|++||+++++++..+.+|...|.+
T Consensus       282 d~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  341 (435)
T 1p22_A          282 NTSTCEFVRTLNGHKRGIACLQYR--------------------DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC  341 (435)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEE--------------------TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             ECCcCcEEEEEcCCCCcEEEEEeC--------------------CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEE
Confidence            999999999999999999999884                    358999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCc---------cceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          340 VTFHPGGKYLVSCGDDKTLRVWDTANKR---------NMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       340 l~~s~~g~~l~sgs~d~~i~vwd~~~~~---------~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ++|  ++.+|++|+.||.|++||+.++.         .+..+.+|...|.+++|  ++.+|++|+.||+|++||+.
T Consensus       342 ~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          342 IRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             EEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred             EEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence            998  78899999999999999987665         67888999999999999  67889999999999999963

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.6e-42  Score=321.08  Aligned_cols=252  Identities=22%  Similarity=0.368  Sum_probs=231.0

Q ss_pred             cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEE
Q psy226          139 EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE  218 (406)
Q Consensus       139 ~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd  218 (406)
                      +....+.+|.+.|++++|+|++++|++|+.|++|++||..+++....+..|...|.+++|+|++.++++|+.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            34567889999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             cCCC------eEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccc
Q psy226          219 VATG------YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESIS  292 (406)
Q Consensus       219 ~~~~------~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  292 (406)
                      +...      .....+.+|...|.+++|+|++..|++++.|++|++||+.+++.+..+.+|...|.++.+.|.       
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~-------  207 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS-------  207 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC-------
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC-------
Confidence            8643      345667789999999999999999999999999999999999999999999999999999874       


Q ss_pred             cccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee
Q psy226          293 EAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL  372 (406)
Q Consensus       293 ~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l  372 (406)
                               ..+.+|++|+.|+.|++||+++++++..+.+|...|.+++|+|++.+|++|+.|++|++||+.+.+.+..+
T Consensus       208 ---------~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~  278 (354)
T 2pbi_B          208 ---------ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY  278 (354)
T ss_dssp             ---------SSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ---------CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence                     14678999999999999999999999999999999999999999999999999999999999988776666


Q ss_pred             ccc--cceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          373 EAH--SHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       373 ~~h--~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ..+  ...+.+++|+|++.+|++|+.||+|++||++
T Consensus       279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~  314 (354)
T 2pbi_B          279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL  314 (354)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence            543  3468999999999999999999999999963

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.8e-42  Score=315.40  Aligned_cols=251  Identities=28%  Similarity=0.491  Sum_probs=225.7

Q ss_pred             EEEEecccccCeeeEEECCCC-CEEEEEeCCCcEEEEeCCC-----CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCc
Q psy226          140 YERALHGHLDSVQDIAFDQSG-KLLVSCSADMSLKLWDMST-----YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT  213 (406)
Q Consensus       140 ~~~~~~~h~~~V~~l~~~~~g-~~l~sgs~d~~i~vwd~~~-----~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~  213 (406)
                      +..++.+|.+.|++++|+|++ ++|++|+.|++|++||+.+     +.++..+.+|...|.+++|+|++.+|++|+.|++
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~   88 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT   88 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence            456789999999999999965 8999999999999999853     3457788999999999999999999999999999


Q ss_pred             EEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCcccccc
Q psy226          214 IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISE  293 (406)
Q Consensus       214 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  293 (406)
                      |++||+.++.++..+.+|...|.+++|+|++.+|++|+.|++|++||++ ......+.+|...|.++.+.|....     
T Consensus        89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~-----  162 (319)
T 3frx_A           89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA-----  162 (319)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC--------
T ss_pred             EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC-----
Confidence            9999999999999999999999999999999999999999999999996 4567788899999999999985321     


Q ss_pred             ccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec
Q psy226          294 AAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE  373 (406)
Q Consensus       294 ~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~  373 (406)
                             ..++.++++++.|+.|++||+++++....+.+|...|.+++|+|+|++|++|+.||+|++||+.+++.+.++.
T Consensus       163 -------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~  235 (319)
T 3frx_A          163 -------DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS  235 (319)
T ss_dssp             ----------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             -------CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence                   1245689999999999999999999999999999999999999999999999999999999999999888887


Q ss_pred             cccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          374 AHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       374 ~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .+ ..|.+++|+|++.+|++++.+ .+++|++
T Consensus       236 ~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~  265 (319)
T 3frx_A          236 AQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSL  265 (319)
T ss_dssp             CC-SCEEEEEECSSSSEEEEEETT-EEEEEEE
T ss_pred             CC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEe
Confidence            65 579999999999999988755 5999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.3e-43  Score=336.04  Aligned_cols=280  Identities=15%  Similarity=0.295  Sum_probs=237.9

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-----------EEEEecccc------------cCeeeEEECCCC
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE-----------YERALHGHL------------DSVQDIAFDQSG  160 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~-----------~~~~~~~h~------------~~V~~l~~~~~g  160 (406)
                      .|.++|++++|+|++.+||+|+.||.|+|||+.+++           ....+.+|.            ..|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            467899999999999999999999999999999876           577888998            889999999998


Q ss_pred             --CEEEEEeCCCcEEEEeCCCCeEE---------------------------------------EE-EecCCcceEEEEE
Q psy226          161 --KLLVSCSADMSLKLWDMSTYQCL---------------------------------------KT-MQGHDHNVTGVAF  198 (406)
Q Consensus       161 --~~l~sgs~d~~i~vwd~~~~~~~---------------------------------------~~-~~~h~~~v~~~~~  198 (406)
                        .+|++|+.|++|++||+.+++..                                       .. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998764331                                       12 3679999999999


Q ss_pred             ecCCCEEEEEeCCCcEEEEEcCC-CeEEE-------EeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCCccc---
Q psy226          199 LPNSDFVLSASRDKTIKMWEVAT-GYCVK-------TLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKET---  266 (406)
Q Consensus       199 ~p~~~~l~s~s~d~~i~iwd~~~-~~~~~-------~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~---  266 (406)
                      +|++++|++| .|++|++||+.+ +....       .+.+|...|.+++|+|++ ++|++|+.||.|++||+++...   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999998 799999999984 44444       256899999999999998 9999999999999999998876   


Q ss_pred             -eeEEecCCc------------eEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC-CeEEEEEeC
Q psy226          267 -KAELRGHDH------------TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS-GSLLFTLIG  332 (406)
Q Consensus       267 -~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~-~~~~~~~~~  332 (406)
                       ...+..|..            .|.+++|+|                  ++.+|++++. +.|++||+++ ++++..+.+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------------------~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~  325 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSH------------------SGRYMMTRDY-LSVKVWDLNMENRPVETYQV  325 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECT------------------TSSEEEEEES-SEEEEEETTCCSSCSCCEES
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECC------------------CCCEEEEeeC-CeEEEEeCCCCccccceeec
Confidence             677888876            899999998                  4778999999 9999999997 888888888


Q ss_pred             CCcC---------------EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc-----------------------
Q psy226          333 HDNW---------------VRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA-----------------------  374 (406)
Q Consensus       333 h~~~---------------v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~-----------------------  374 (406)
                      |...               +..++|+|++++|++|+.||.|++||+.+++.+ .+..                       
T Consensus       326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (447)
T 3dw8_B          326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRK  404 (447)
T ss_dssp             CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCC
T ss_pred             cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcc
Confidence            8642               234999999999999999999999999887654 2222                       


Q ss_pred             ----------ccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          375 ----------HSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       375 ----------h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                                +...|.+++|+|++.+||+++.++ +.+|.-
T Consensus       405 ~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          405 KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             cccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence                      234688999999999999998876 777764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.1e-41  Score=324.73  Aligned_cols=279  Identities=30%  Similarity=0.505  Sum_probs=257.8

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      ....+.+|..+|++++|+  ++++++|+.||+|++||+.+++....+.+|...|.+++|+  ++.|++|+.|++|++||+
T Consensus       151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~  226 (445)
T 2ovr_B          151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI  226 (445)
T ss_dssp             EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEES
T ss_pred             EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEEC
Confidence            345678999999999998  5799999999999999999999999999999999999995  578999999999999999


Q ss_pred             CCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Q psy226          178 STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTAR  257 (406)
Q Consensus       178 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~  257 (406)
                      .+++++..+.+|...|.+++|  +++++++|+.|+.|++||+.++.++..+.+|...|.++.|  ++.++++|+.|+.|+
T Consensus       227 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~  302 (445)
T 2ovr_B          227 ETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR  302 (445)
T ss_dssp             SSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred             CCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEE
Confidence            999999999999999999999  6889999999999999999999999999999999999999  788999999999999


Q ss_pred             EEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC---CC
Q psy226          258 VWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG---HD  334 (406)
Q Consensus       258 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~---h~  334 (406)
                      +||+++++....+.+|...+.++.+.                    +.++++|+.||.|++||+++++++..+.+   |.
T Consensus       303 i~d~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  362 (445)
T 2ovr_B          303 VWDVETGNCIHTLTGHQSLTSGMELK--------------------DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ  362 (445)
T ss_dssp             EEETTTCCEEEEECCCCSCEEEEEEE--------------------TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCS
T ss_pred             EEECCCCCEEEEEcCCcccEEEEEEe--------------------CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCC
Confidence            99999999999999999999888774                    34899999999999999999999999886   88


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee-----ccccceEEEEEEeCCCCEEEEeeCCCe----EEEeec
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL-----EAHSHFVTSLDFHRAHPYVVTGSVDKT----VKVWEC  405 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l-----~~h~~~v~~l~~~~~~~~l~sgs~Dg~----v~iw~~  405 (406)
                      ..|.+++|+  +++|++|+.||.|++||+.+++.+..+     ..|...|++++|+|++.+||+|+.||+    |.+||+
T Consensus       363 ~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df  440 (445)
T 2ovr_B          363 SAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  440 (445)
T ss_dssp             SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             CCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEEC
Confidence            899999996  579999999999999999999988887     578889999999999999999999998    999997


Q ss_pred             C
Q psy226          406 R  406 (406)
Q Consensus       406 ~  406 (406)
                      +
T Consensus       441 ~  441 (445)
T 2ovr_B          441 D  441 (445)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-42  Score=330.24  Aligned_cols=280  Identities=19%  Similarity=0.286  Sum_probs=243.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      ..+....|+|++++||+|+.||.|++||+.+++....+.+|...|++++|+|++++|++|+.|++|++||+.+++.+..+
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  177 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL  177 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence            33455578999999999999999999999999988888999999999999999999999999999999999999999999


Q ss_pred             ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC---CccEEE---------------------EEECC
Q psy226          187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH---REWVRQ---------------------IKVSP  242 (406)
Q Consensus       187 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~---~~~v~~---------------------l~~~~  242 (406)
                      .+|...|.+++|+|++++|++++.|++|++||++++..+..+..|   ...+.+                     ++|+|
T Consensus       178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~  257 (420)
T 3vl1_A          178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT  257 (420)
T ss_dssp             ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence            999999999999999999999999999999999999999888753   334444                     45578


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCccceeEEe-cCCceEEEEEeCCCCCccccccccCCCCCCCCCC-EEEEEeCCCcEEEEE
Q psy226          243 DGTLLASCSNDHTARVWSLATKETKAELR-GHDHTVECVAWAPGVASESISEAAGRPPGQGGGP-YLATGSRDKTIKLWD  320 (406)
Q Consensus       243 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~lwd  320 (406)
                      ++++|++|+.||.|++||+++......+. .|...|.+++|+|+                  +. +|++|+.||.|++||
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~~l~~g~~dg~i~vwd  319 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGN------------------NANYIYAGYENGMLAQWD  319 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSS------------------CTTEEEEEETTSEEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCC------------------CCCEEEEEeCCCeEEEEE
Confidence            99999999999999999999887766654 58889999999984                  45 899999999999999


Q ss_pred             CCCCeE-EEEEeC-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------cceeeccccceEEEEEEeCCCC
Q psy226          321 VGSGSL-LFTLIG-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR---------NMKTLEAHSHFVTSLDFHRAHP  389 (406)
Q Consensus       321 ~~~~~~-~~~~~~-h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~---------~~~~l~~h~~~v~~l~~~~~~~  389 (406)
                      +++++. +..+.+ |...|.++.+ |++++|++++.|+.|++||+....         ....+..|...|.+++|+|++.
T Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          320 LRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE  398 (420)
T ss_dssp             TTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred             cCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence            998753 566666 6778888865 578899999999999999987632         2234556788899999999999


Q ss_pred             ---EEEEeeCCCeEEEeec
Q psy226          390 ---YVVTGSVDKTVKVWEC  405 (406)
Q Consensus       390 ---~l~sgs~Dg~v~iw~~  405 (406)
                         .|++.+.+|.+.+|++
T Consensus       399 ~~g~l~a~g~~g~~~~~~~  417 (420)
T 3vl1_A          399 SNGEVLEVGKNNFCALYNL  417 (420)
T ss_dssp             SSCEEEEEETTTEEEEEES
T ss_pred             CcceEEEEcCCceEEEEec
Confidence               6777778999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-42  Score=317.90  Aligned_cols=243  Identities=27%  Similarity=0.496  Sum_probs=205.4

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-------CcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYET-------GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~-------~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      +|..+|.+++|+|++++||+|+.|++|+|||...       .+....+.+|...|.+++|+|+|++|++|+.|++|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            3999999999999999999999999999999853       345677899999999999999999999999999999999


Q ss_pred             CCC----CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC--eEEEEeecCCccEEEEEECCC--CCEEE
Q psy226          177 MST----YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG--YCVKTLTGHREWVRQIKVSPD--GTLLA  248 (406)
Q Consensus       177 ~~~----~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~l~  248 (406)
                      +..    .+++..+.+|...|.+++|+|++.+|++|+.|++|++||..++  .++..+.+|...|.+++|+|+  +.+|+
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  215 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC  215 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence            942    3677889999999999999999999999999999999999876  678899999999999999998  77899


Q ss_pred             EEeCCCeEEEEeCCCc--------cceeEEec-CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEE
Q psy226          249 SCSNDHTARVWSLATK--------ETKAELRG-HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLW  319 (406)
Q Consensus       249 s~~~d~~v~vwd~~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lw  319 (406)
                      +|+.|++|++||+...        .....+.. |...|.+++|++                   +.++++++.|+.|++|
T Consensus       216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-------------------~~~l~s~~~dg~v~iw  276 (330)
T 2hes_X          216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-------------------NGLIASVGADGVLAVY  276 (330)
T ss_dssp             EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-------------------TSCEEEEETTSCEEEE
T ss_pred             EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-------------------CCEEEEEeCCCEEEEE
Confidence            9999999999998754        22334444 889999999986                   2379999999999999


Q ss_pred             ECCCCe--EEEE-EeCCCc-CEEEEEEcC--CCCEEEEEeCCCeEEEEeCCC
Q psy226          320 DVGSGS--LLFT-LIGHDN-WVRGVTFHP--GGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       320 d~~~~~--~~~~-~~~h~~-~v~~l~~s~--~g~~l~sgs~d~~i~vwd~~~  365 (406)
                      |..++.  .... +.+|.. .|.+++|+|  ++++|++|+.||+|+|||+..
T Consensus       277 ~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          277 EEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            998774  3333 367887 899999999  789999999999999999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-42  Score=320.30  Aligned_cols=249  Identities=30%  Similarity=0.551  Sum_probs=219.8

Q ss_pred             cEEEEeccccc-CeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE---EEecCCcceEEEEEecCCCEEEEEeCCCcE
Q psy226          139 EYERALHGHLD-SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK---TMQGHDHNVTGVAFLPNSDFVLSASRDKTI  214 (406)
Q Consensus       139 ~~~~~~~~h~~-~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i  214 (406)
                      +....+.+|.+ .|.+++|+|+|++|++|+.|++|++||+.++....   ...+|...|.+++|+|++++|++|+.|++|
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            45677889988 99999999999999999999999999998775432   236899999999999999999999999999


Q ss_pred             EEEEcCCC--eEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCcc---ceeEEecCCceEEEEEeCCCCCcc
Q psy226          215 KMWEVATG--YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKE---TKAELRGHDHTVECVAWAPGVASE  289 (406)
Q Consensus       215 ~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~  289 (406)
                      ++||+.++  .++..+.+|...|.+++|+|++++|++|+.|++|++||+....   ....+.+|...|.+++|+|     
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-----  160 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-----  160 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-----
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-----
Confidence            99999876  4678899999999999999999999999999999999997654   3556788999999999998     


Q ss_pred             ccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe--EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-
Q psy226          290 SISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS--LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK-  366 (406)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~--~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~-  366 (406)
                                   ++.+|++|+.|+.|++||.+++.  +...+.+|...|.+++|+|+|++|++|+.|++|+|||.... 
T Consensus       161 -------------~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~  227 (345)
T 3fm0_A          161 -------------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG  227 (345)
T ss_dssp             -------------SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTT
T ss_pred             -------------CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCC
Confidence                         46789999999999999998875  45788999999999999999999999999999999996322 


Q ss_pred             --------------ccceeecc-ccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          367 --------------RNMKTLEA-HSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       367 --------------~~~~~l~~-h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                                    +++.++.+ |...|.+++|+|++.+|++++.|+.|++|+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~  281 (345)
T 3fm0_A          228 NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE  281 (345)
T ss_dssp             CTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred             CCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence                          22334444 8889999999999999999999999999985

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=9.8e-43  Score=324.33  Aligned_cols=248  Identities=21%  Similarity=0.315  Sum_probs=213.8

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE----EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE----RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~----~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      ...+|...|++++|+|++. +++++.||+|+|||+.+++..    ....+|...|++++|+|+|++|++|+.|++|++||
T Consensus        89 ~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd  167 (357)
T 4g56_B           89 AGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD  167 (357)
T ss_dssp             EEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            4557999999999999976 456788999999999887643    23458999999999999999999999999999999


Q ss_pred             CCCCeEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEEee--cCCccEEEEEECCC-CCEEEEEeC
Q psy226          177 MSTYQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKTLT--GHREWVRQIKVSPD-GTLLASCSN  252 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~l~s~~~  252 (406)
                      +.+++++..+.+|...|.+++|+|++. ++++++.|++|++||++++.....+.  .|...+.+++|+|+ +.+|++|+.
T Consensus       168 ~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~  247 (357)
T 4g56_B          168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE  247 (357)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence            999999999999999999999999875 78999999999999999987766543  56778999999997 568899999


Q ss_pred             CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy226          253 DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~  332 (406)
                      |+.|++||+++++....+.+|...|.+++|+|+                 ++.+|++|+.|++|+|||+++++++.. .+
T Consensus       248 d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~-----------------~~~~lasgs~D~~i~iwd~~~~~~~~~-~~  309 (357)
T 4g56_B          248 TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYH-----------------SSPFLASISEDCTVAVLDADFSEVFRD-LS  309 (357)
T ss_dssp             SSCEEEEESSCGGGCEEECCCSSCEEEEEECSS-----------------SSCCEEEEETTSCEEEECTTSCEEEEE-CC
T ss_pred             ccceeEEECCCCcEeEEEeccceeEEEEEEcCC-----------------CCCEEEEEeCCCEEEEEECCCCcEeEE-CC
Confidence            999999999999999999999999999999984                 346899999999999999999887755 58


Q ss_pred             CCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc
Q psy226          333 HDNWVRGVTFHP-GGKYLVSCGDDKTLRVWDTANKR  367 (406)
Q Consensus       333 h~~~v~~l~~s~-~g~~l~sgs~d~~i~vwd~~~~~  367 (406)
                      |.+.|++|+|+| ++.+|+|||.||+|++||+.+..
T Consensus       310 H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          310 HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            999999999999 79999999999999999997643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.3e-42  Score=317.84  Aligned_cols=282  Identities=18%  Similarity=0.305  Sum_probs=251.5

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE-
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC-  182 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~-  182 (406)
                      -|.++|.+++|+|++++++++..++.+.+|+...........+|...|.+++|+|++++|++++ |+.|++||+.+++. 
T Consensus         7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~   85 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK   85 (337)
T ss_dssp             EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred             ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence            3567899999999999999998888887776665544445558999999999999999999998 99999999986542 


Q ss_pred             --EEEEe--cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe--EEEEeecCCccEEEEEECCCCCEEEEEeCCCeE
Q psy226          183 --LKTMQ--GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY--CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTA  256 (406)
Q Consensus       183 --~~~~~--~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v  256 (406)
                        ...+.  +|...|.+++|+|++++|++++.|+.|++||+.++.  ....+.+|...+.+++|+|+++++++++.|+.|
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v  165 (337)
T 1gxr_A           86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI  165 (337)
T ss_dssp             SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence              23333  788999999999999999999999999999999877  667788999999999999999999999999999


Q ss_pred             EEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcC
Q psy226          257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNW  336 (406)
Q Consensus       257 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~  336 (406)
                      ++||+++.+....+..|...+.++.|+|                  ++.++++++.|+.|++||+++++.+..+. |...
T Consensus       166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~  226 (337)
T 1gxr_A          166 AVWDLHNQTLVRQFQGHTDGASCIDISN------------------DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ  226 (337)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECT------------------TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSC
T ss_pred             EEEeCCCCceeeeeecccCceEEEEECC------------------CCCEEEEEecCCcEEEEECCCCceEeeec-CCCc
Confidence            9999999988889999999999999998                  46789999999999999999999887764 7788


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          337 VRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       337 v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +.+++|+|++++|++++.|+.|++||+.+++. ..+..|...|.+++|+|++++|++++.||.|++||++
T Consensus       227 v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence            99999999999999999999999999988765 4677899999999999999999999999999999963

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.8e-41  Score=323.83  Aligned_cols=276  Identities=33%  Similarity=0.607  Sum_probs=254.1

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      ..+.+|.+.|.. ++++++++|++|+.||+|++||+.+++....+.+|...|.+++|+  +++|++|+.|++|++||+.+
T Consensus       112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~  188 (445)
T 2ovr_B          112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET  188 (445)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred             EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc
Confidence            468899987643 355568999999999999999999999999999999999999997  57999999999999999999


Q ss_pred             CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW  259 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vw  259 (406)
                      ++++..+.+|...|.++.|+  ++.+++|+.|++|++||+.++.++..+.+|...|.++++  ++.++++|+.|+.|++|
T Consensus       189 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw  264 (445)
T 2ovr_B          189 GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVW  264 (445)
T ss_dssp             TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEE
T ss_pred             CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEE
Confidence            99999999999999999996  578999999999999999999999999999999999999  78899999999999999


Q ss_pred             eCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEE
Q psy226          260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRG  339 (406)
Q Consensus       260 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~  339 (406)
                      |+++.+....+.+|...|.++.|.                    +.++++|+.|+.|++||+++++++..+.+|...+.+
T Consensus       265 d~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~  324 (445)
T 2ovr_B          265 DPETETCLHTLQGHTNRVYSLQFD--------------------GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG  324 (445)
T ss_dssp             EGGGTEEEEEECCCSSCEEEEEEC--------------------SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE
T ss_pred             ECCCCcEeEEecCCCCceEEEEEC--------------------CCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEE
Confidence            999999999999999999999983                    458999999999999999999999999999999998


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc---ccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          340 VTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA---HSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       340 l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~---h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +.++  +++|++|+.||.|++||+.+++.+.++..   |...|++++|+  +.+|++|+.||.|++||++
T Consensus       325 ~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          325 MELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             EEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             EEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence            8874  67999999999999999999999888876   88899999996  5799999999999999964

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-43  Score=333.59  Aligned_cols=257  Identities=25%  Similarity=0.401  Sum_probs=230.1

Q ss_pred             EEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC
Q psy226          132 LWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD  211 (406)
Q Consensus       132 vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d  211 (406)
                      .|+..+....+.+.+|.+.|++++|+|++++|++|+.|++|++||+.+++....+.+|...|.+++|+|++++|++|+.|
T Consensus        50 ~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d  129 (380)
T 3iz6_a           50 SFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD  129 (380)
T ss_dssp             CCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred             ccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence            35555556678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEcCCCe-------EEEEeecCCccEEEEEECCC-CCEEEEEeCCCeEEEEeCCCccceeEE-----ecCCceEE
Q psy226          212 KTIKMWEVATGY-------CVKTLTGHREWVRQIKVSPD-GTLLASCSNDHTARVWSLATKETKAEL-----RGHDHTVE  278 (406)
Q Consensus       212 ~~i~iwd~~~~~-------~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~-----~~~~~~v~  278 (406)
                      ++|++||+.+..       ....+.+|...|.++.|.|+ +..|++|+.|++|++||+.++..+..+     .+|...|.
T Consensus       130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~  209 (380)
T 3iz6_a          130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL  209 (380)
T ss_dssp             SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred             CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence            999999986532       34567899999999999997 457999999999999999998887766     67889999


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC-CCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCe
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG-SGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT  357 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~-~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~  357 (406)
                      ++.|.|.                 ++.++++|+.|+.|++||++ .+..+..+.+|...|.+++|+|+|++|++|+.||+
T Consensus       210 ~~~~~~~-----------------~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~  272 (380)
T 3iz6_a          210 SLSINSL-----------------NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT  272 (380)
T ss_dssp             EEEECSS-----------------SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC
T ss_pred             EEEeecC-----------------CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe
Confidence            9999763                 46789999999999999998 45778889999999999999999999999999999


Q ss_pred             EEEEeCCCCccceeecccc-------ceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          358 LRVWDTANKRNMKTLEAHS-------HFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       358 i~vwd~~~~~~~~~l~~h~-------~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |++||+.+++.+..+..+.       ..|++++|+|++++|++|+.||.|++||+
T Consensus       273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~  327 (380)
T 3iz6_a          273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT  327 (380)
T ss_dssp             EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred             EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence            9999999998887775442       24899999999999999999999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-41  Score=321.81  Aligned_cols=289  Identities=21%  Similarity=0.312  Sum_probs=247.4

Q ss_pred             eEEeccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEe-------------cccccCeeeEEECC-CCCEE
Q psy226           99 KFALSGHRSPVIKVIFHP-VFSLMASCSEDATIRLWDYETGEYERAL-------------HGHLDSVQDIAFDQ-SGKLL  163 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p-~~~~latgs~dg~v~vwd~~~~~~~~~~-------------~~h~~~V~~l~~~~-~g~~l  163 (406)
                      ...+.+|.++|++++|+| ++++||+|+.||.|++||+.+++....+             .+|...|.+++|+| ++.+|
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            346778999999999999 9999999999999999999987644333             25999999999999 77899


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCC---CEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEE
Q psy226          164 VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS---DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKV  240 (406)
Q Consensus       164 ~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~  240 (406)
                      ++|+.|+.|++||+.+++....+. +...+.++.|+|.+   .++++++.|+.|++||+.++..+..+.+|...|.+++|
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~  194 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSW  194 (408)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEE
T ss_pred             EEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEE
Confidence            999999999999999998887776 77889999999854   49999999999999999999999999999999999999


Q ss_pred             CCCCC-EEEEEeCCCeEEEEeCCCcc-ceeEE---------------ecCCceEEEEEeCCCCCccccccccCCCCCCCC
Q psy226          241 SPDGT-LLASCSNDHTARVWSLATKE-TKAEL---------------RGHDHTVECVAWAPGVASESISEAAGRPPGQGG  303 (406)
Q Consensus       241 ~~~~~-~l~s~~~d~~v~vwd~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (406)
                      +|++. ++++|+.||.|++||+++.. ....+               ..|...|.+++|+|                  +
T Consensus       195 ~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------~  256 (408)
T 4a11_B          195 SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS------------------D  256 (408)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT------------------T
T ss_pred             CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC------------------C
Confidence            99998 58999999999999998764 23333               57888999999998                  4


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEeCCC-----cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccce
Q psy226          304 GPYLATGSRDKTIKLWDVGSGSLLFTLIGHD-----NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF  378 (406)
Q Consensus       304 ~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~-----~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~  378 (406)
                      +.+|++++.|+.|++||+.+++....+.++.     ..+........+..+++++.|+.|++||+.+++.+..+.+|...
T Consensus       257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~  336 (408)
T 4a11_B          257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT  336 (408)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC
T ss_pred             CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe
Confidence            7789999999999999999887655443321     11222222334556677788999999999999999999999999


Q ss_pred             EEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          379 VTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       379 v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      |++++|+|++++|++|+.||.|++||++
T Consensus       337 v~~~~~s~~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          337 VDCCVFQSNFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence            9999999999999999999999999974

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.8e-43  Score=321.61  Aligned_cols=263  Identities=24%  Similarity=0.402  Sum_probs=214.5

Q ss_pred             EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEecCCcceEEEEEec--CCCEEEEEeCCCcEEEE
Q psy226          142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ--CLKTMQGHDHNVTGVAFLP--NSDFVLSASRDKTIKMW  217 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~iw  217 (406)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++  ++..+.+|...|.+++|+|  ++++|++|+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            3457899999999999999999999999999999998764  4678899999999999986  48899999999999999


Q ss_pred             EcCCC--eEEEEeecCCccEEEEEECCC--CCEEEEEeCCCeEEEEeCCCccc---eeEEecCCceEEEEEeCCCCCccc
Q psy226          218 EVATG--YCVKTLTGHREWVRQIKVSPD--GTLLASCSNDHTARVWSLATKET---KAELRGHDHTVECVAWAPGVASES  290 (406)
Q Consensus       218 d~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~  290 (406)
                      |++++  .....+.+|...|.+++|+|+  +.+|++|+.|++|++||+.....   ...+.+|...+.++.|+|......
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            99887  466778899999999999998  88999999999999999986532   345568889999999998642111


Q ss_pred             cccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC---eEEEEEeCCCcCEEEEEEcCCC----CEEEEEeCCCeEEEEeC
Q psy226          291 ISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG---SLLFTLIGHDNWVRGVTFHPGG----KYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       291 ~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~---~~~~~~~~h~~~v~~l~~s~~g----~~l~sgs~d~~i~vwd~  363 (406)
                      ..... .......+.+|++|+.|+.|++||++.+   +++..+.+|..+|.+++|+|++    ++|++|+.|++|++||+
T Consensus       167 ~~~~~-~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~  245 (316)
T 3bg1_A          167 LIDHP-SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC  245 (316)
T ss_dssp             ----C-CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred             ccccc-cccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence            10000 0000112568999999999999999765   4677889999999999999987    89999999999999998


Q ss_pred             CCCc----cceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          364 ANKR----NMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       364 ~~~~----~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .+..    ....+..|...|.+++|+|++++||+|+.||+|++|+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~  291 (316)
T 3bg1_A          246 DDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE  291 (316)
T ss_dssp             SSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred             cCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence            7631    23456778889999999999999999999999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.8e-42  Score=318.47  Aligned_cols=273  Identities=14%  Similarity=0.173  Sum_probs=246.2

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---EEEEecccccCeeeEEECCCCC-EEEEEeCCCcEEEEeC
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE---YERALHGHLDSVQDIAFDQSGK-LLVSCSADMSLKLWDM  177 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~---~~~~~~~h~~~V~~l~~~~~g~-~l~sgs~d~~i~vwd~  177 (406)
                      ..+|.++|++++|+|++.+|++|+.||.|++||+.+++   ....+.+|...|.+++|+|+++ +|++|+.|+.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            35899999999999999999999999999999998877   3445568999999999999999 9999999999999999


Q ss_pred             -CCCeEEEEEec--CCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC---------CeEEEEeecCCccEEEEEECCCCC
Q psy226          178 -STYQCLKTMQG--HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT---------GYCVKTLTGHREWVRQIKVSPDGT  245 (406)
Q Consensus       178 -~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~---------~~~~~~~~~~~~~v~~l~~~~~~~  245 (406)
                       .+++. ..+.+  |...|.+++|+| ++++++++.|+.|++||+++         +.++..+. |...|.+++|+|++ 
T Consensus        87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-  162 (342)
T 1yfq_A           87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-  162 (342)
T ss_dssp             SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred             ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence             87764 67788  999999999999 99999999999999999987         76666666 88999999999988 


Q ss_pred             EEEEEeCCCeEEEEeCCC-cc--ceeEEecCCceEEEEEeCC-CCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEEC
Q psy226          246 LLASCSNDHTARVWSLAT-KE--TKAELRGHDHTVECVAWAP-GVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDV  321 (406)
Q Consensus       246 ~l~s~~~d~~v~vwd~~~-~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~  321 (406)
                       +++++.|+.|++||+++ ..  .......|...+.+++|+| +                  +.++++++.||.|++||+
T Consensus       163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~------------------~~~l~~~~~dg~i~i~~~  223 (342)
T 1yfq_A          163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE------------------QEGYACSSIDGRVAVEFF  223 (342)
T ss_dssp             -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG------------------GCEEEEEETTSEEEEEEC
T ss_pred             -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC------------------CCEEEEEecCCcEEEEEE
Confidence             99999999999999987 44  3345557888999999987 4                  568999999999999999


Q ss_pred             CCC------eEEEEEeCCCc---------CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc-cceEEEEEEe
Q psy226          322 GSG------SLLFTLIGHDN---------WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH-SHFVTSLDFH  385 (406)
Q Consensus       322 ~~~------~~~~~~~~h~~---------~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h-~~~v~~l~~~  385 (406)
                      ...      +....+.+|..         .|.+++|+|++++|++|+.||.|++||+.+++.+.++..| ...|.+++  
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--  301 (342)
T 1yfq_A          224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--  301 (342)
T ss_dssp             CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--
T ss_pred             cCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--
Confidence            876      77788888865         9999999999999999999999999999999999999998 99999999  


Q ss_pred             CCCCEEEEeeCCCe
Q psy226          386 RAHPYVVTGSVDKT  399 (406)
Q Consensus       386 ~~~~~l~sgs~Dg~  399 (406)
                      |++.+|++|+.||.
T Consensus       302 ~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          302 CSDNILCLATSDDT  315 (342)
T ss_dssp             ECSSEEEEEEECTH
T ss_pred             CCCCeEEEEecCCc
Confidence            99999999999998

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.3e-43  Score=322.05  Aligned_cols=250  Identities=22%  Similarity=0.361  Sum_probs=211.9

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--EEEEecccccCeeeEEECC--CCCEEEEEeCCCcEEEEe
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE--YERALHGHLDSVQDIAFDQ--SGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~--~g~~l~sgs~d~~i~vwd  176 (406)
                      .+.+|.++|++++|+|++++||+|+.|++|+|||+.++.  ....+.+|.+.|.+++|++  ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            467999999999999999999999999999999998875  4567899999999999986  489999999999999999


Q ss_pred             CCCC--eEEEEEecCCcceEEEEEecC--CCEEEEEeCCCcEEEEEcCCCe---EEEEeecCCccEEEEEECCC------
Q psy226          177 MSTY--QCLKTMQGHDHNVTGVAFLPN--SDFVLSASRDKTIKMWEVATGY---CVKTLTGHREWVRQIKVSPD------  243 (406)
Q Consensus       177 ~~~~--~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~------  243 (406)
                      +.++  +....+.+|...|.+++|+|+  +.+|++|+.|++|++||+.++.   ....+.+|...|.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            9876  466778899999999999998  7899999999999999998763   23456789999999999997      


Q ss_pred             -----------CCEEEEEeCCCeEEEEeCCCc---cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE
Q psy226          244 -----------GTLLASCSNDHTARVWSLATK---ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT  309 (406)
Q Consensus       244 -----------~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  309 (406)
                                 +.+|++|+.|++|++||++..   .....+.+|...|.+++|+|+..              ..+.+|++
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~--------------~~~~~las  233 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG--------------LPTSTIAS  233 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS--------------CSCCEEEE
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC--------------CCCceEEE
Confidence                       478999999999999999754   35567889999999999998521              12368999


Q ss_pred             EeCCCcEEEEECCCC---e-EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          310 GSRDKTIKLWDVGSG---S-LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       310 ~~~d~~i~lwd~~~~---~-~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      |+.|++|++||+.+.   . ....+.+|...|.+++|+|+|++|++|+.|++|++|+..
T Consensus       234 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          234 CSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999999998762   1 123446788999999999999999999999999999975

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.3e-41  Score=319.28  Aligned_cols=240  Identities=30%  Similarity=0.541  Sum_probs=219.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      ..|.+++|+|++++||+|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.++++...+
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999887777


Q ss_pred             ecCCcceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCeEEEEe-------ecCCccEEEEEECCCCCEEEEEeCCCeEEE
Q psy226          187 QGHDHNVTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTL-------TGHREWVRQIKVSPDGTLLASCSNDHTARV  258 (406)
Q Consensus       187 ~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~iwd~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~s~~~d~~v~v  258 (406)
                      . +...+.+++|+| ++.+|++|+.|++|++||++++..+..+       .+|...|.+++|+|+|++|++|+.|++|++
T Consensus       204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~  282 (393)
T 1erj_A          204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL  282 (393)
T ss_dssp             E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            5 566899999999 8899999999999999999999887776       579999999999999999999999999999


Q ss_pred             EeCCCcc------------ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE
Q psy226          259 WSLATKE------------TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL  326 (406)
Q Consensus       259 wd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~  326 (406)
                      ||+++..            ....+.+|...|.+++|+|                  ++.+|++|+.|+.|++||+.++++
T Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~------------------~~~~l~sgs~D~~v~iwd~~~~~~  344 (393)
T 1erj_A          283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ------------------NDEYILSGSKDRGVLFWDKKSGNP  344 (393)
T ss_dssp             EEC---------------CEEEEEECCSSCEEEEEECG------------------GGCEEEEEETTSEEEEEETTTCCE
T ss_pred             EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC------------------CCCEEEEEeCCCeEEEEECCCCeE
Confidence            9997532            3456778999999999987                  467899999999999999999999


Q ss_pred             EEEEeCCCcCEEEEEEcC------CCCEEEEEeCCCeEEEEeCCC
Q psy226          327 LFTLIGHDNWVRGVTFHP------GGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       327 ~~~~~~h~~~v~~l~~s~------~g~~l~sgs~d~~i~vwd~~~  365 (406)
                      +..+.+|.+.|.+++|+|      ++++|++|+.||+|+||++..
T Consensus       345 ~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          345 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            999999999999999986      688999999999999999754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.3e-41  Score=309.02  Aligned_cols=250  Identities=32%  Similarity=0.571  Sum_probs=229.6

Q ss_pred             cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEE
Q psy226          139 EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE  218 (406)
Q Consensus       139 ~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd  218 (406)
                      .....+.+|...|++++|+|+|++|++|+.|+.|++|++.+++....+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd   93 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD   93 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCC
Q psy226          219 VATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       219 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                      +.++.++..+.+|...|.+++|+|++++|++|+.|+.|++||+++.+....+..|..+|.++.|+|              
T Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--------------  159 (312)
T 4ery_A           94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR--------------  159 (312)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--------------
T ss_pred             CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC--------------
Confidence            999999999999999999999999999999999999999999999998999999999999999998              


Q ss_pred             CCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccc
Q psy226          299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI-GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSH  377 (406)
Q Consensus       299 ~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~-~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~  377 (406)
                          ++.++++|+.|+.|++||+++++.+..+. .+...+..++|+|++++|++++.|+.|++||+.+++.+..+.+|..
T Consensus       160 ----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  235 (312)
T 4ery_A          160 ----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN  235 (312)
T ss_dssp             ----TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC
T ss_pred             ----CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC
Confidence                46789999999999999999999887765 4567899999999999999999999999999999999888888765


Q ss_pred             eE---EEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          378 FV---TSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       378 ~v---~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      .+   ......+++.+|++|+.||.|++||++
T Consensus       236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             SSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred             ceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence            43   222334678899999999999999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-41  Score=350.85  Aligned_cols=301  Identities=12%  Similarity=0.151  Sum_probs=245.6

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~  181 (406)
                      ...|..+|.+++|+| +.+|++++.|++|++||+.+++....+. |...|++++|+|++++|++|+.||+|++||+.+++
T Consensus        54 ~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~  131 (902)
T 2oaj_A           54 KLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ  131 (902)
T ss_dssp             ECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE
T ss_pred             EcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence            345889999999999 8899999999999999999999888775 67899999999999999999999999999999887


Q ss_pred             EE-----------EEEecCCcceEEEEEecC-CCEEEEEeCCCcEEEEEcCCCeEEEEeecC------------------
Q psy226          182 CL-----------KTMQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVATGYCVKTLTGH------------------  231 (406)
Q Consensus       182 ~~-----------~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~------------------  231 (406)
                      +.           ..+.+|...|.+++|+|+ +..+++|+.|++| +||++++.++..+..|                  
T Consensus       132 ~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h  210 (902)
T 2oaj_A          132 LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR  210 (902)
T ss_dssp             EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred             cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccccccc
Confidence            54           223578899999999996 4689999999999 9999999998888766                  


Q ss_pred             CccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeE--E---ec-------------CCceEEEEEeC----CCC---
Q psy226          232 REWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAE--L---RG-------------HDHTVECVAWA----PGV---  286 (406)
Q Consensus       232 ~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~---~~-------------~~~~v~~~~~~----~~~---  286 (406)
                      ...|.+++|+|+|.+|++|+.|++|++||+++++.+..  +   ..             |...|.+++|+    |+.   
T Consensus       211 ~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~l  290 (902)
T 2oaj_A          211 TPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSL  290 (902)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEE
T ss_pred             CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEE
Confidence            57799999999999999999999999999988766542  1   11             23468888884    210   


Q ss_pred             -----Ccc-----cc---c----------------------------------------------------c--------
Q psy226          287 -----ASE-----SI---S----------------------------------------------------E--------  293 (406)
Q Consensus       287 -----~~~-----~~---~----------------------------------------------------~--------  293 (406)
                           ...     .+   .                                                    .        
T Consensus       291 l~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~  370 (902)
T 2oaj_A          291 LISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLI  370 (902)
T ss_dssp             EEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEE
T ss_pred             EEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEE
Confidence                 000     00   0                                                    0        


Q ss_pred             -----------ccCC---C----------------------------------------------------CCCCCCCEE
Q psy226          294 -----------AAGR---P----------------------------------------------------PGQGGGPYL  307 (406)
Q Consensus       294 -----------~~~~---~----------------------------------------------------~~~~~~~~l  307 (406)
                                 ..+.   .                                                    ...+++.+|
T Consensus       371 s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~l  450 (902)
T 2oaj_A          371 LGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAF  450 (902)
T ss_dssp             ETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEE
T ss_pred             cCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEE
Confidence                       0000   0                                                    001246789


Q ss_pred             EEEeCCCcEEEEECCCCeE----EEE--Ee-----CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------
Q psy226          308 ATGSRDKTIKLWDVGSGSL----LFT--LI-----GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR---------  367 (406)
Q Consensus       308 ~s~~~d~~i~lwd~~~~~~----~~~--~~-----~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~---------  367 (406)
                      ++|+.|++||+||+.++..    ...  +.     +|...|.+|+|+|+|++||+|+.||+|+|||+.+++         
T Consensus       451 aSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~  530 (902)
T 2oaj_A          451 ITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPE  530 (902)
T ss_dssp             EEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--------
T ss_pred             EEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCC
Confidence            9999999999999987642    111  12     789999999999999999999999999999987652         


Q ss_pred             ------------------------------------cceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          368 ------------------------------------NMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       368 ------------------------------------~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                                                          ++.++.+|.+.|++|+|+|+| +||+|+.||+|+|||++
T Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~  604 (902)
T 2oaj_A          531 SGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR  604 (902)
T ss_dssp             -------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred             CcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECC
Confidence                                                356778899999999999999 99999999999999963

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=8.5e-41  Score=309.59  Aligned_cols=254  Identities=27%  Similarity=0.512  Sum_probs=217.2

Q ss_pred             EEEEecccccCeeeEEE-----CC-CCCEEEEEeCCCcEEEEeCCC-------CeEEEEEecCCcceEEEEEecCCCEEE
Q psy226          140 YERALHGHLDSVQDIAF-----DQ-SGKLLVSCSADMSLKLWDMST-------YQCLKTMQGHDHNVTGVAFLPNSDFVL  206 (406)
Q Consensus       140 ~~~~~~~h~~~V~~l~~-----~~-~g~~l~sgs~d~~i~vwd~~~-------~~~~~~~~~h~~~v~~~~~~p~~~~l~  206 (406)
                      ....+.+|.+.|++++|     ++ ++++|++|+.|++|++||+.+       +.+...+.+|...|.+++|+|++.+++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            45678899999999999     76 899999999999999999864       346678899999999999999999999


Q ss_pred             EEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe---cCCceEEEEEeC
Q psy226          207 SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR---GHDHTVECVAWA  283 (406)
Q Consensus       207 s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---~~~~~v~~~~~~  283 (406)
                      +|+.|++|++||++++.++..+.+|...|.+++|+|++++|++|+.|++|++||+.... .....   +|...|.++.|+
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~  171 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYS  171 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEEC
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeeec
Confidence            99999999999999999999999999999999999999999999999999999997432 22222   688899999999


Q ss_pred             CCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy226          284 PGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~  363 (406)
                      |......        ...+.+.++++++.|+.|++|| ..++....+.+|...|.+++|+|+|++|++|+.||.|++||+
T Consensus       172 ~~~~~~~--------~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          172 PIMKSAN--------KVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             CCCCSCS--------CCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred             ccccccc--------ccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            8642210        1112357899999999999999 456778889999999999999999999999999999999999


Q ss_pred             CC-CccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          364 AN-KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       364 ~~-~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .. ......+. +...|.+++|+|++.+|++| .|+.|++|++
T Consensus       243 ~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~  283 (343)
T 2xzm_R          243 LNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNL  283 (343)
T ss_dssp             SCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEES
T ss_pred             CCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEe
Confidence            44 44444443 45579999999999988755 5888999986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.2e-41  Score=333.14  Aligned_cols=286  Identities=19%  Similarity=0.316  Sum_probs=245.1

Q ss_pred             eEEeccCCC---CeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcEEEEe-c---ccccCeeeEEECCCCCEEEEEeCCC
Q psy226           99 KFALSGHRS---PVIKVIFHPV-FSLMASCSEDATIRLWDYETGEYERAL-H---GHLDSVQDIAFDQSGKLLVSCSADM  170 (406)
Q Consensus        99 ~~~l~~h~~---~V~~v~~~p~-~~~latgs~dg~v~vwd~~~~~~~~~~-~---~h~~~V~~l~~~~~g~~l~sgs~d~  170 (406)
                      ...+.+|..   +|++++|+|+ +++|++|+.||.|++||+.+++....+ .   +|...|.+++|+ ++.+|++++.|+
T Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~  274 (615)
T 1pgu_A          196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA  274 (615)
T ss_dssp             EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred             eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence            345778999   9999999999 999999999999999999999998888 6   899999999999 999999999999


Q ss_pred             cEEEEeCCCCeEEEEEecC----CcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCC---
Q psy226          171 SLKLWDMSTYQCLKTMQGH----DHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD---  243 (406)
Q Consensus       171 ~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---  243 (406)
                      .|++||+.+++.+..+..+    ...+.++.|. +++++++++.|+.|++||+.++..+..+.+|...|.+++| |+   
T Consensus       275 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~  352 (615)
T 1pgu_A          275 TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLIS  352 (615)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEE
T ss_pred             cEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEE
Confidence            9999999999999888877    3678888885 8899999999999999999998888888777766666655 43   


Q ss_pred             ------------------------------CCEEEEEeCCCeEEEEeCC-------------------------------
Q psy226          244 ------------------------------GTLLASCSNDHTARVWSLA-------------------------------  262 (406)
Q Consensus       244 ------------------------------~~~l~s~~~d~~v~vwd~~-------------------------------  262 (406)
                                                    +..+++++.|+.+++||+.                               
T Consensus       353 ~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  432 (615)
T 1pgu_A          353 GSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLIL  432 (615)
T ss_dssp             EETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEE
T ss_pred             ECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEE
Confidence                                          4455555555555555543                               


Q ss_pred             -------------------------------------------Cccce-eEEecCCceEEEEEeCCCCCccccccccCCC
Q psy226          263 -------------------------------------------TKETK-AELRGHDHTVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       263 -------------------------------------------~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                                                                 +.... ..+..|...|.+++|+|              
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--------------  498 (615)
T 1pgu_A          433 QSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP--------------  498 (615)
T ss_dssp             ETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT--------------
T ss_pred             eccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECC--------------
Confidence                                                       22211 23344555666666665              


Q ss_pred             CCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC-CCcCEEEEEEcC----------CCCEEEEEeCCCeEEEEeCCCC-
Q psy226          299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG-HDNWVRGVTFHP----------GGKYLVSCGDDKTLRVWDTANK-  366 (406)
Q Consensus       299 ~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~-h~~~v~~l~~s~----------~g~~l~sgs~d~~i~vwd~~~~-  366 (406)
                          ++.+|++++.|+.|++||+.+++++..+.+ |...|++++|+|          ++++|++|+.||.|++||+.++ 
T Consensus       499 ----~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  574 (615)
T 1pgu_A          499 ----SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM  574 (615)
T ss_dssp             ----TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             ----CCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc
Confidence                578999999999999999999999999988 999999999999          9999999999999999999987 


Q ss_pred             ccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          367 RNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       367 ~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +.+..+.+|...|++++|+|+++ |++++.||.|++|++.
T Consensus       575 ~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          575 KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred             eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence            78888999999999999999999 9999999999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.7e-40  Score=319.85  Aligned_cols=279  Identities=24%  Similarity=0.387  Sum_probs=250.4

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEEC--CCCCEEEEEeCCCcEEEEe
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFD--QSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~--~~g~~l~sgs~d~~i~vwd  176 (406)
                      ...+.+|.++|++++|+|++ +|++|+.||+|++||+.+++....+.+|...|.+++|+  +++.+|++|+.|++|++||
T Consensus       155 ~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd  233 (464)
T 3v7d_B          155 LLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  233 (464)
T ss_dssp             EEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred             EEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence            44578999999999999988 99999999999999999999999999999999999998  5789999999999999999


Q ss_pred             CCCCe-----------------------EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCc
Q psy226          177 MSTYQ-----------------------CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE  233 (406)
Q Consensus       177 ~~~~~-----------------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  233 (406)
                      +.+..                       ....+.+|...|.++  +++++++++|+.|++|++||+.++.++..+.+|..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~  311 (464)
T 3v7d_B          234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD  311 (464)
T ss_dssp             CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence            98654                       255778898888876  57789999999999999999999999999999999


Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC
Q psy226          234 WVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD  313 (406)
Q Consensus       234 ~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  313 (406)
                      .|.+++|+|+++++++|+.|+.|++||+.+++.+..+.+|...|.++.|++                    .++++|+.|
T Consensus       312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--------------------~~l~s~s~d  371 (464)
T 3v7d_B          312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--------------------KFLVSAAAD  371 (464)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS--------------------SEEEEEETT
T ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC--------------------CEEEEEeCC
Confidence            999999999999999999999999999999999999999999999999864                    479999999


Q ss_pred             CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccee-eccccceEEEEEEeCCCCEEE
Q psy226          314 KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKT-LEAHSHFVTSLDFHRAHPYVV  392 (406)
Q Consensus       314 ~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~-l~~h~~~v~~l~~~~~~~~l~  392 (406)
                      |.|++||+.++....... |...+..++|+|++++|++|+ ||.|++||+.+++.+.. +..|...|.+++|+ ...+++
T Consensus       372 g~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~  448 (464)
T 3v7d_B          372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVA  448 (464)
T ss_dssp             SEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEE
T ss_pred             CcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEE
Confidence            999999999988766654 666788899999999999999 89999999999998876 57788999999998 445667


Q ss_pred             EeeCCCeEEEe
Q psy226          393 TGSVDKTVKVW  403 (406)
Q Consensus       393 sgs~Dg~v~iw  403 (406)
                      +++.||.+.+|
T Consensus       449 ~~~~~g~~~i~  459 (464)
T 3v7d_B          449 AVEKDGQSFLE  459 (464)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEeCCeEEEE
Confidence            77778876555

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7.1e-42  Score=315.27  Aligned_cols=292  Identities=17%  Similarity=0.250  Sum_probs=227.7

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----cEEEEecccccCeeeEEECC--CCCEEEEEeCCCcEEE
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG----EYERALHGHLDSVQDIAFDQ--SGKLLVSCSADMSLKL  174 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~----~~~~~~~~h~~~V~~l~~~~--~g~~l~sgs~d~~i~v  174 (406)
                      .+.+|.++|++++|+|++++||+|+.||+|++||+.++    +....+.+|...|.+++|+|  ++.+|++|+.|++|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            57899999999999999999999999999999999876    46677889999999999999  6999999999999999


Q ss_pred             EeCCCC---------eEEEEEecCCcceEEEEEecC--CCEEEEEeCCCcEEEEEcCCCeEEEEee-------------c
Q psy226          175 WDMSTY---------QCLKTMQGHDHNVTGVAFLPN--SDFVLSASRDKTIKMWEVATGYCVKTLT-------------G  230 (406)
Q Consensus       175 wd~~~~---------~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~-------------~  230 (406)
                      ||+.++         +.+..+.+|...|.+++|+|+  +.++++++.|+.|++||++++..+..+.             +
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  165 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN  165 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence            999876         667888999999999999999  9999999999999999998876543332             5


Q ss_pred             CCccEEEEEECCC---CCEEEEEeCCCeEEEEeCCCccc--eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCC
Q psy226          231 HREWVRQIKVSPD---GTLLASCSNDHTARVWSLATKET--KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGP  305 (406)
Q Consensus       231 ~~~~v~~l~~~~~---~~~l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (406)
                      |...+.+++|+|+   +.++++++.|+.+.+|+......  ...+.+|...|.+++|+|+...              .+.
T Consensus       166 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~--------------~~~  231 (351)
T 3f3f_A          166 HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR--------------WYQ  231 (351)
T ss_dssp             CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC--------------SSE
T ss_pred             cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC--------------cce
Confidence            7788999999997   99999999999998888776654  6677789999999999984100              016


Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEe----CCCeEEEEeCCCCccceeeccccceEEE
Q psy226          306 YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCG----DDKTLRVWDTANKRNMKTLEAHSHFVTS  381 (406)
Q Consensus       306 ~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs----~d~~i~vwd~~~~~~~~~l~~h~~~v~~  381 (406)
                      +|++|+.|+.|++||++.+........+...+....+++....+..+.    ....+.+|+....+.+..+.+|...|++
T Consensus       232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  311 (351)
T 3f3f_A          232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS  311 (351)
T ss_dssp             EEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEE
T ss_pred             EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEE
Confidence            899999999999999988766555544444444555555554444443    4455667777777888889999999999


Q ss_pred             EEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          382 LDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       382 l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ++|+|++++|++|+.||.|++|++.
T Consensus       312 ~~~s~~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          312 VSWNLTGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             EEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEcCCCCEEEEecCCCcEEEEecC
Confidence            9999999999999999999999963

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.8e-41  Score=315.54  Aligned_cols=289  Identities=21%  Similarity=0.315  Sum_probs=243.2

Q ss_pred             ceEEeccCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCC-CcEE-EEecccccCeeeEEECCCCCEEEEEeCCCcE
Q psy226           98 EKFALSGHRSPVIKVIFHPV---FSLMASCSEDATIRLWDYET-GEYE-RALHGHLDSVQDIAFDQSGKLLVSCSADMSL  172 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~---~~~latgs~dg~v~vwd~~~-~~~~-~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i  172 (406)
                      ....+.+|.++|++++|+|+   +++|++|+.||.|++||+.+ +... ..+.+|...|.+++|+|++++|++|+.|+.|
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v  110 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA  110 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcE
Confidence            34467899999999999999   59999999999999999997 5444 7788999999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEecCCcceEEEEE--ecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEE
Q psy226          173 KLWDMSTYQCLKTMQGHDHNVTGVAF--LPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASC  250 (406)
Q Consensus       173 ~vwd~~~~~~~~~~~~h~~~v~~~~~--~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  250 (406)
                      ++||+.+++.+. +.+|...|.+++|  +|++.+|++++.|+.|++||++++..+..+..+. .+.++.+.  +..++++
T Consensus       111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~  186 (368)
T 3mmy_A          111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVA  186 (368)
T ss_dssp             EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEE
T ss_pred             EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEE
Confidence            999999988765 6679999999999  8889999999999999999999999888888775 45555555  4588999


Q ss_pred             eCCCeEEEEeCCCccceeEEe--cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC---e
Q psy226          251 SNDHTARVWSLATKETKAELR--GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG---S  325 (406)
Q Consensus       251 ~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~---~  325 (406)
                      +.|+.+++|++..........  .+...+.++.+.+....              ....+++++.|+.|++||++..   .
T Consensus       187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~dg~i~i~~~~~~~~~~  252 (368)
T 3mmy_A          187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN--------------KPTGFALGSIEGRVAIHYINPPNPAK  252 (368)
T ss_dssp             EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS--------------CEEEEEEEETTSEEEEEESSCSCHHH
T ss_pred             eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC--------------CCCeEEEecCCCcEEEEecCCCCccc
Confidence            999999999998754432221  23344445544432110              1234999999999999999887   5


Q ss_pred             EEEEEeCCCc------------CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEE
Q psy226          326 LLFTLIGHDN------------WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVT  393 (406)
Q Consensus       326 ~~~~~~~h~~------------~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~s  393 (406)
                      .+..+.+|..            .|++++|+|++++|++|+.||.|++||+.+++.+..+..|...|++++|+|++++|++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~  332 (368)
T 3mmy_A          253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAY  332 (368)
T ss_dssp             HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred             cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEE
Confidence            5677888876            7999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCeEEEee
Q psy226          394 GSVDKTVKVWE  404 (406)
Q Consensus       394 gs~Dg~v~iw~  404 (406)
                      |+.|+..+.|+
T Consensus       333 ~s~d~~~~~~~  343 (368)
T 3mmy_A          333 ASSYDWSKGHE  343 (368)
T ss_dssp             EECCCSTTCGG
T ss_pred             Eeccccccccc
Confidence            99998655544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-41  Score=345.50  Aligned_cols=183  Identities=15%  Similarity=0.150  Sum_probs=162.1

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      ....||.++|++++|+|++.+||+|+.||+|+|||..+++....+ .|...|.+++|+| |++|++++.|++|++||+.+
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence            345699999999999999999999999999999999887765544 4788999999999 88999999999999999999


Q ss_pred             CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEE-----------EEeecCCccEEEEEECCC-CCEE
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV-----------KTLTGHREWVRQIKVSPD-GTLL  247 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~-----------~~~~~~~~~v~~l~~~~~-~~~l  247 (406)
                      ++++..+. |...|++++|+|++++|++|+.||+|++||+.++.+.           ..+.+|...|.+++|+|+ +..+
T Consensus        89 ~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l  167 (902)
T 2oaj_A           89 QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV  167 (902)
T ss_dssp             CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred             CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence            99888886 6789999999999999999999999999999988754           234678999999999996 5789


Q ss_pred             EEEeCCCeEEEEeCCCccceeEEecC------------------CceEEEEEeCCCC
Q psy226          248 ASCSNDHTARVWSLATKETKAELRGH------------------DHTVECVAWAPGV  286 (406)
Q Consensus       248 ~s~~~d~~v~vwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~  286 (406)
                      ++|+.|+.| +||+++.+....+..|                  ...|.+++|+|+.
T Consensus       168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg  223 (902)
T 2oaj_A          168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS  223 (902)
T ss_dssp             EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS
T ss_pred             EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC
Confidence            999999999 9999998887777665                  4679999999963

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.3e-40  Score=331.37  Aligned_cols=281  Identities=15%  Similarity=0.248  Sum_probs=260.0

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC----cEEEEecccccC-eeeEEECC--CCCEEEEEeCCCcEEEEe
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG----EYERALHGHLDS-VQDIAFDQ--SGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~----~~~~~~~~h~~~-V~~l~~~~--~g~~l~sgs~d~~i~vwd  176 (406)
                      .|.+.|++++|+|++++||+++ ++.|++||+.++    +....+.+|... |++++|+|  ++++|++|+.||+|++||
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   94 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence            6889999999999999999998 889999999998    888999999999 99999999  999999999999999999


Q ss_pred             CCCC--------eEEEEEecCCcceEEEEEecCCCEEEEEeCC----CcEEEEEcCCCeEEEEeecCCccEEEEEECCCC
Q psy226          177 MSTY--------QCLKTMQGHDHNVTGVAFLPNSDFVLSASRD----KTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG  244 (406)
Q Consensus       177 ~~~~--------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~  244 (406)
                      +.++        +....+..|...|.+++|+|++++|++++.+    +.|++||  ++..+..+.+|...|.+++|+|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~  172 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR  172 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC
Confidence            9744        6778888999999999999999999999988    6888888  667888999999999999999999


Q ss_pred             C-EEEEEeCCCeEEEEeCCCccceeEEecCCc---eEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEE
Q psy226          245 T-LLASCSNDHTARVWSLATKETKAELRGHDH---TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWD  320 (406)
Q Consensus       245 ~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd  320 (406)
                      . ++++++.|+.|++||+.+.+....+.+|..   .|.+++|+|+                 ++.++++++.|+.|++||
T Consensus       173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~~l~~~~~dg~i~vwd  235 (615)
T 1pgu_A          173 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD-----------------SGEFVITVGSDRKISCFD  235 (615)
T ss_dssp             SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST-----------------TCCEEEEEETTCCEEEEE
T ss_pred             CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCC-----------------CCCEEEEEeCCCeEEEEE
Confidence            8 899999999999999999999999999999   9999999983                 267899999999999999


Q ss_pred             CCCCeEEEEE-e---CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc----cceEEEEEEeCCCCEEE
Q psy226          321 VGSGSLLFTL-I---GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH----SHFVTSLDFHRAHPYVV  392 (406)
Q Consensus       321 ~~~~~~~~~~-~---~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h----~~~v~~l~~~~~~~~l~  392 (406)
                      +.+++.+..+ .   +|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+    ...+.++.|. ++.+++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  313 (615)
T 1pgu_A          236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRII  313 (615)
T ss_dssp             TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEE
T ss_pred             CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEE
Confidence            9999999998 6   899999999999 9999999999999999999999988888766    4678888886 889999


Q ss_pred             EeeCCCeEEEeecC
Q psy226          393 TGSVDKTVKVWECR  406 (406)
Q Consensus       393 sgs~Dg~v~iw~~~  406 (406)
                      +|+.||.|++||++
T Consensus       314 ~~~~~g~i~~~d~~  327 (615)
T 1pgu_A          314 SLSLDGTLNFYELG  327 (615)
T ss_dssp             EEETTSCEEEEETT
T ss_pred             EEECCCCEEEEECC
Confidence            99999999999963

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.7e-39  Score=348.73  Aligned_cols=306  Identities=27%  Similarity=0.461  Sum_probs=269.9

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECC--CCCEEEEEeCCCcEEEEe
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQ--SGKLLVSCSADMSLKLWD  176 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~--~g~~l~sgs~d~~i~vwd  176 (406)
                      ...+.+|.++|++++|+|++++||+|+.||+|+|||+.+++....+.+|...|.+++|+|  ++.++++|+.|+.|++||
T Consensus       650 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd  729 (1249)
T 3sfz_A          650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD  729 (1249)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEE
T ss_pred             EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEE
Confidence            446789999999999999999999999999999999999999999999999999999999  456899999999999999


Q ss_pred             CCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe----------------------------
Q psy226          177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL----------------------------  228 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~----------------------------  228 (406)
                      +.++++...+.+|...|.+++|+|+++++++|+.||+|++||+.++.....+                            
T Consensus       730 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d  809 (1249)
T 3sfz_A          730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD  809 (1249)
T ss_dssp             TTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTT
T ss_pred             CCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCC
Confidence            9999999999999999999999999999999999999999999877544332                            


Q ss_pred             ---------------------------ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEE
Q psy226          229 ---------------------------TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVA  281 (406)
Q Consensus       229 ---------------------------~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~  281 (406)
                                                 .+|...|.+++|+|++.++++++.|+.|++||+.++.....+.+|...|.+++
T Consensus       810 g~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~  889 (1249)
T 3sfz_A          810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM  889 (1249)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             CCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEE
Confidence                                       16778899999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCcccc---------ccc----------------------------------------------------cCCCCC
Q psy226          282 WAPGVASESI---------SEA----------------------------------------------------AGRPPG  300 (406)
Q Consensus       282 ~~~~~~~~~~---------~~~----------------------------------------------------~~~~~~  300 (406)
                      |+|+......         ...                                                    ......
T Consensus       890 ~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  969 (1249)
T 3sfz_A          890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL  969 (1249)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEE
Confidence            9997421100         000                                                    000012


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEE
Q psy226          301 QGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVT  380 (406)
Q Consensus       301 ~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~  380 (406)
                      .+++.++++|+.||.|++||+.+++....+.+|...|++++|+|+|++|++++.||.|++||+.+++.. .+..|...|.
T Consensus       970 sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~ 1048 (1249)
T 3sfz_A          970 SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVK 1048 (1249)
T ss_dssp             CTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEE
Confidence            346789999999999999999999999999999999999999999999999999999999999988766 4557889999


Q ss_pred             EEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          381 SLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       381 ~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +++|+|++ .+++++.||.|++||+.
T Consensus      1049 ~~~~~~~~-~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A         1049 DFRLLQDS-RLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp             EEEECSSS-EEEEEESSSEEEEEETT
T ss_pred             EEEEcCCC-cEEEEECCCcEEEEECC
Confidence            99999965 57889999999999963

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-39  Score=305.15  Aligned_cols=251  Identities=22%  Similarity=0.393  Sum_probs=222.1

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCcEEEEecccccCeeeEEECCC--CCEEEEEeCCCcEEEE
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYE--TGEYERALHGHLDSVQDIAFDQS--GKLLVSCSADMSLKLW  175 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~--~~~~~~~~~~h~~~V~~l~~~~~--g~~l~sgs~d~~i~vw  175 (406)
                      ..+.+|.++|++++|+|++++||+|+.||.|+|||+.  +++....+.+|...|++++|+++  +.+|++|+.|+.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            3578999999999999999999999999999999998  55677788999999999999987  8999999999999999


Q ss_pred             eCCCCe--EEEEEecCCcceEEEEEecC--CCEEEEEeCCCcEEEEEcCCC--eEEEEeecCCccEEEEEECC-------
Q psy226          176 DMSTYQ--CLKTMQGHDHNVTGVAFLPN--SDFVLSASRDKTIKMWEVATG--YCVKTLTGHREWVRQIKVSP-------  242 (406)
Q Consensus       176 d~~~~~--~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~-------  242 (406)
                      |+.+++  .+..+.+|...|.+++|+|+  +.++++++.|+.|++||+.++  .....+.+|...|.+++|+|       
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  164 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  164 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence            999886  77788889999999999999  899999999999999999887  34556778999999999999       


Q ss_pred             ------CCCEEEEEeCCCeEEEEeCCCcc----ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC
Q psy226          243 ------DGTLLASCSNDHTARVWSLATKE----TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR  312 (406)
Q Consensus       243 ------~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  312 (406)
                            ++.+|++|+.|+.|++||+++..    ....+.+|...|.+++|+|+.               ..+.+|++++.
T Consensus       165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~---------------~~~~~l~s~~~  229 (379)
T 3jrp_A          165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---------------LLRSYLASVSQ  229 (379)
T ss_dssp             -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---------------SSSEEEEEEET
T ss_pred             cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCC---------------CCCCeEEEEeC
Confidence                  69999999999999999998754    345677899999999999841               01678999999


Q ss_pred             CCcEEEEECCCCe-----EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy226          313 DKTIKLWDVGSGS-----LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       313 d~~i~lwd~~~~~-----~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~  365 (406)
                      |+.|++||++++.     .+.....|...|.+++|+|+|++|++++.||.|++||+..
T Consensus       230 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          230 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            9999999998863     2222334888999999999999999999999999999874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-40  Score=306.27  Aligned_cols=262  Identities=24%  Similarity=0.438  Sum_probs=223.1

Q ss_pred             cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEecCCcceEEEEEecC--CCEEEEEeCCCcE
Q psy226          139 EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFLPN--SDFVLSASRDKTI  214 (406)
Q Consensus       139 ~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~i  214 (406)
                      +....+.+|.+.|++++|+|++++|++|+.|+.|++||+.  +++.+..+.+|...|.+++|+|+  +++|++|+.|+.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            4556788999999999999999999999999999999997  66778889999999999999977  8999999999999


Q ss_pred             EEEEcCCCe--EEEEeecCCccEEEEEECCC--CCEEEEEeCCCeEEEEeCCCcc--ceeEEecCCceEEEEEeCCCCCc
Q psy226          215 KMWEVATGY--CVKTLTGHREWVRQIKVSPD--GTLLASCSNDHTARVWSLATKE--TKAELRGHDHTVECVAWAPGVAS  288 (406)
Q Consensus       215 ~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~  288 (406)
                      ++||+.++.  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||+....  ....+..|...|.++.|+|....
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            999999987  77888899999999999999  9999999999999999998763  34567789999999999984221


Q ss_pred             cccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe----EEEEEeCCCcCEEEEEEcCC---CCEEEEEeCCCeEEEE
Q psy226          289 ESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS----LLFTLIGHDNWVRGVTFHPG---GKYLVSCGDDKTLRVW  361 (406)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~----~~~~~~~h~~~v~~l~~s~~---g~~l~sgs~d~~i~vw  361 (406)
                      ...     ......++.++++|+.|+.|++||++++.    +...+.+|...|.+++|+|+   +++|++++.||.|++|
T Consensus       162 ~~~-----~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw  236 (379)
T 3jrp_A          162 EDG-----EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW  236 (379)
T ss_dssp             -------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             ccc-----cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence            100     00011247799999999999999997654    55678899999999999999   8999999999999999


Q ss_pred             eCCCCc-----cceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          362 DTANKR-----NMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       362 d~~~~~-----~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |+.++.     .+.....|...|++++|+|++++|++++.||.|++|++
T Consensus       237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            998763     22223348889999999999999999999999999986

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.5e-40  Score=313.07  Aligned_cols=278  Identities=22%  Similarity=0.318  Sum_probs=239.1

Q ss_pred             CeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCc----EEEEecccccCeeeEEECC-CCCEEEEEeCCCcEEEEeCCCC-
Q psy226          108 PVIKVIFHPVFSL-MASCSEDATIRLWDYETGE----YERALHGHLDSVQDIAFDQ-SGKLLVSCSADMSLKLWDMSTY-  180 (406)
Q Consensus       108 ~V~~v~~~p~~~~-latgs~dg~v~vwd~~~~~----~~~~~~~h~~~V~~l~~~~-~g~~l~sgs~d~~i~vwd~~~~-  180 (406)
                      ....++++|+... +++|+.||.|+|||+....    ....+.+|.+.|++++|+| ++++|++|+.||+|++||+.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            3456889998754 4568999999999986642    2345778999999999999 8999999999999999999887 


Q ss_pred             ------eEEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCeEEEEe--ecCCccEEEEEECCCCCEEEEEe
Q psy226          181 ------QCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGYCVKTL--TGHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       181 ------~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                            +.+..+.+|...|.+++|+|++ ++|++|+.|++|++||+.++..+..+  .+|...|.+++|+|++.+|++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                  5678899999999999999998 69999999999999999999999999  88999999999999999999999


Q ss_pred             CCCeEEEEeCCCccceeEE-ecCCce-EEEEEeCCCCCccccccccCCCCCCCCCCEEEEE---eCCCcEEEEECCCCeE
Q psy226          252 NDHTARVWSLATKETKAEL-RGHDHT-VECVAWAPGVASESISEAAGRPPGQGGGPYLATG---SRDKTIKLWDVGSGSL  326 (406)
Q Consensus       252 ~d~~v~vwd~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---~~d~~i~lwd~~~~~~  326 (406)
                      .|+.|++||+++++....+ ..|... +.++.|+|                  ++.++++|   +.|+.|++||++++..
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS------------------EGKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS------------------TTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC------------------CCcEEEEeccCCCCceEEEEcCccccC
Confidence            9999999999998888888 688765 88899987                  46788888   7899999999988654


Q ss_pred             -EEE-EeCCCcCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCcc-ceeeccc--cceEEEEEEeCCCCEEEEeeCCCeE
Q psy226          327 -LFT-LIGHDNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTANKRN-MKTLEAH--SHFVTSLDFHRAHPYVVTGSVDKTV  400 (406)
Q Consensus       327 -~~~-~~~h~~~v~~l~~s~~g~~l~-sgs~d~~i~vwd~~~~~~-~~~l~~h--~~~v~~l~~~~~~~~l~sgs~Dg~v  400 (406)
                       +.. ...|...+.+++|+|++++|+ +|+.||.|++||+.+++. +..+..|  ...|.+++|+|++.++++  .|+.+
T Consensus       258 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~  335 (402)
T 2aq5_A          258 PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIA  335 (402)
T ss_dssp             CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEE
T ss_pred             CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeE
Confidence             222 235777899999999999996 455799999999998874 5555544  578999999999998874  56799


Q ss_pred             EEeec
Q psy226          401 KVWEC  405 (406)
Q Consensus       401 ~iw~~  405 (406)
                      ++|++
T Consensus       336 ~~~~l  340 (402)
T 2aq5_A          336 RFYKL  340 (402)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.6e-39  Score=329.23  Aligned_cols=288  Identities=27%  Similarity=0.393  Sum_probs=255.2

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      ....+.+|..+|.+++|+|++++|++|+.||.|++||+.+++....+.+|.+.|.+++|+|++++|++|+.||+|++||+
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~  126 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEG
T ss_pred             eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEEC
Confidence            34567799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-eEEEEEecCCcceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCeEEEEeecCC-ccEEEEEECC--CCCEEEEEeC
Q psy226          178 STY-QCLKTMQGHDHNVTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTLTGHR-EWVRQIKVSP--DGTLLASCSN  252 (406)
Q Consensus       178 ~~~-~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~l~s~~~  252 (406)
                      .++ .....+.+|...|.+++|+| +++.+++++.|++|++||+.++.....+..+. ..+..++|+|  ++.++++++.
T Consensus       127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  206 (814)
T 3mkq_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (814)
T ss_dssp             GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred             CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence            876 77788899999999999999 78899999999999999998887777776655 8899999999  9999999999


Q ss_pred             CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy226          253 DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~  332 (406)
                      ||.|++||+.++.....+.+|...|.+++|+|                  ++.++++++.||.|++||+.+++.+..+..
T Consensus       207 dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  268 (814)
T 3mkq_A          207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP------------------TLPIIISGSEDGTLKIWNSSTYKVEKTLNV  268 (814)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECS------------------SSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC------------------CCCEEEEEeCCCeEEEEECCCCcEEEEeec
Confidence            99999999999998999999999999999998                  467899999999999999999999999999


Q ss_pred             CCcCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCccce----------------------------------------
Q psy226          333 HDNWVRGVTFHPGGK--YLVSCGDDKTLRVWDTANKRNMK----------------------------------------  370 (406)
Q Consensus       333 h~~~v~~l~~s~~g~--~l~sgs~d~~i~vwd~~~~~~~~----------------------------------------  370 (406)
                      |...+.+++|+|+|.  ++++++ |+.+.+|++.......                                        
T Consensus       269 ~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (814)
T 3mkq_A          269 GLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSL  347 (814)
T ss_dssp             SSSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCC
T ss_pred             CCCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCcccee
Confidence            999999999999987  455555 5667888865432111                                        


Q ss_pred             ---eeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          371 ---TLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       371 ---~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                         .+..+...+.+++|+|++++|++++ ||.+.+|++
T Consensus       348 ~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~  384 (814)
T 3mkq_A          348 QTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA  384 (814)
T ss_dssp             CCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred             eeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence               1122344578999999999999988 899999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.1e-38  Score=292.11  Aligned_cols=252  Identities=25%  Similarity=0.498  Sum_probs=224.5

Q ss_pred             CCcEEEEecccccCeeeEEECCC-CCEEEEEeCCCcEEEEeCCCC-----eEEEEEecCCcceEEEEEecCCCEEEEEeC
Q psy226          137 TGEYERALHGHLDSVQDIAFDQS-GKLLVSCSADMSLKLWDMSTY-----QCLKTMQGHDHNVTGVAFLPNSDFVLSASR  210 (406)
Q Consensus       137 ~~~~~~~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~  210 (406)
                      +..+..+|+||.+.|++|+|+|+ +++|+|||.|++|++||+.+.     .+...+.+|...|.+++|+|++++|++|+.
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            33456679999999999999997 689999999999999998753     356788999999999999999999999999


Q ss_pred             CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc-eeEEecCCceEEEEEeCCCCCcc
Q psy226          211 DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET-KAELRGHDHTVECVAWAPGVASE  289 (406)
Q Consensus       211 d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~  289 (406)
                      |+.|++|+............+...+..+.+++++.+|++|+.|+.+++||+..... .....+|...+..+.|.+..   
T Consensus       107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---  183 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS---  183 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS---
T ss_pred             cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC---
Confidence            99999999999998888888999999999999999999999999999999876543 33456788999999998742   


Q ss_pred             ccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc
Q psy226          290 SISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNM  369 (406)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~  369 (406)
                                   ...++++++.|+.|++||+++++++..+.+|...|++++|+|++++|++|+.||.|++||+.+.+.+
T Consensus       184 -------------~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~  250 (340)
T 4aow_A          184 -------------SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL  250 (340)
T ss_dssp             -------------SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             -------------CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee
Confidence                         3467899999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          370 KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       370 ~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ..+..+ ..|.+++|+|++.++ +++.|+.|++||++
T Consensus       251 ~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~  285 (340)
T 4aow_A          251 YTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLE  285 (340)
T ss_dssp             EEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETT
T ss_pred             eeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECC
Confidence            888755 579999999988655 56679999999964

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-38  Score=305.90  Aligned_cols=279  Identities=15%  Similarity=0.167  Sum_probs=238.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---EEEEecc------------------------------------
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE---YERALHG------------------------------------  146 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~---~~~~~~~------------------------------------  146 (406)
                      ..|+.+++|+|++++|+++ .++.|++||+.+|+   ....+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3589999999999977666 57899999999998   5544432                                    


Q ss_pred             ------------------cccCeeeEEECCCCCEE-EEEeCCCcEEEEeCC--CCeEEEEEe--cCCcceEEEEEecCCC
Q psy226          147 ------------------HLDSVQDIAFDQSGKLL-VSCSADMSLKLWDMS--TYQCLKTMQ--GHDHNVTGVAFLPNSD  203 (406)
Q Consensus       147 ------------------h~~~V~~l~~~~~g~~l-~sgs~d~~i~vwd~~--~~~~~~~~~--~h~~~v~~~~~~p~~~  203 (406)
                                        |.+.|.+++|+|+|++| ++|+.|++|++||+.  +++++..+.  .|...|.+++|+|++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                              33479999999999996 899999999999998  888888776  5678899999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCeEEE----EeecCCccEEEEEECCC---CCEEEEEeCCCeEEEEeCCCccceeE-EecCCc
Q psy226          204 FVLSASRDKTIKMWEVATGYCVK----TLTGHREWVRQIKVSPD---GTLLASCSNDHTARVWSLATKETKAE-LRGHDH  275 (406)
Q Consensus       204 ~l~s~s~d~~i~iwd~~~~~~~~----~~~~~~~~v~~l~~~~~---~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~  275 (406)
                      +|++|+.|+.|++|++.++....    .+.+|...|.+++|+|+   +++|++|+.|+.|++||+.++..+.. +.+|..
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~  242 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH  242 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence            99999999999999998876544    77899999999999999   99999999999999999998887766 568999


Q ss_pred             eEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC----------------------
Q psy226          276 TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH----------------------  333 (406)
Q Consensus       276 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h----------------------  333 (406)
                      .|.+++|+ +                  +.+|++|+.|+.|++||+.+++++..+..+                      
T Consensus       243 ~v~~~~~s-d------------------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (450)
T 2vdu_B          243 FVSSICCG-K------------------DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN  303 (450)
T ss_dssp             CEEEEEEC-S------------------TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred             ceEEEEEC-C------------------CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccc
Confidence            99999997 3                  568999999999999999999988887632                      


Q ss_pred             ---CcCEEEEEEcCCCCEEEEEe-CCCeEEEEeC--CCC---ccceeeccccceEEEEEEeCCCCEEEEeeC------CC
Q psy226          334 ---DNWVRGVTFHPGGKYLVSCG-DDKTLRVWDT--ANK---RNMKTLEAHSHFVTSLDFHRAHPYVVTGSV------DK  398 (406)
Q Consensus       334 ---~~~v~~l~~s~~g~~l~sgs-~d~~i~vwd~--~~~---~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~------Dg  398 (406)
                         ...|.+++|+|++++|++++ .|+.|+|||+  .++   +.+..+..| ..|.+++|+|++.++++++.      +.
T Consensus       304 ~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~  382 (450)
T 2vdu_B          304 DIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKN  382 (450)
T ss_dssp             -CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCC
T ss_pred             ccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCc
Confidence               35699999999999999999 8999999999  555   567777777 78999999996555555443      55


Q ss_pred             eEEEeec
Q psy226          399 TVKVWEC  405 (406)
Q Consensus       399 ~v~iw~~  405 (406)
                      .|.+|.+
T Consensus       383 ~i~v~~~  389 (450)
T 2vdu_B          383 FAKFIEY  389 (450)
T ss_dssp             SEEEEEE
T ss_pred             ceEEEEE
Confidence            6888864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.7e-40  Score=309.67  Aligned_cols=241  Identities=19%  Similarity=0.279  Sum_probs=210.3

Q ss_pred             ecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q psy226          144 LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY--QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT  221 (406)
Q Consensus       144 ~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~  221 (406)
                      .+.|.++|++++|+|+|++|++|+.|+.|++||+.++  +.+..+.+|...|.+++|+|++++|++|+.|++|++||+.+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            3446789999999999999999999999999999987  77788899999999999999999999999999999999998


Q ss_pred             Ce---EEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCcc---ceeEEec-CCceEEEEEeCCCCCccccccc
Q psy226          222 GY---CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKE---TKAELRG-HDHTVECVAWAPGVASESISEA  294 (406)
Q Consensus       222 ~~---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~  294 (406)
                      +.   ....+.+|...|.+++|+|++++|++|+.|+.|++||+++..   ....+.. |...|.+++|+|          
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~----------  156 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP----------  156 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT----------
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC----------
Confidence            76   677788999999999999999999999999999999998876   3667777 999999999998          


Q ss_pred             cCCCCCCCCCCEEEEEeCCCcEEEEECC------------------CCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCC
Q psy226          295 AGRPPGQGGGPYLATGSRDKTIKLWDVG------------------SGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK  356 (406)
Q Consensus       295 ~~~~~~~~~~~~l~s~~~d~~i~lwd~~------------------~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~  356 (406)
                              ++.+|++++.|+.|++||+.                  .++++..+ +|...|.+++|+|+|++|++|+.||
T Consensus       157 --------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~  227 (377)
T 3dwl_C          157 --------NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS  227 (377)
T ss_dssp             --------TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT
T ss_pred             --------CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC
Confidence                    46789999999999999985                  35566677 9999999999999999999999999


Q ss_pred             eEEEEeCCCCcc----ceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          357 TLRVWDTANKRN----MKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       357 ~i~vwd~~~~~~----~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      .|++||+.+++.    +..+..|...|.+++|+|++++|++|+.|+.+ +|+
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~  278 (377)
T 3dwl_C          228 SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQ  278 (377)
T ss_dssp             EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EEC
T ss_pred             cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEE
Confidence            999999999887    88899999999999999999999999877766 554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2e-38  Score=320.75  Aligned_cols=248  Identities=28%  Similarity=0.537  Sum_probs=221.4

Q ss_pred             EEEecccccCeeeEEECCCC-CEEEEEeCCCcEEEEeCCC-----CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcE
Q psy226          141 ERALHGHLDSVQDIAFDQSG-KLLVSCSADMSLKLWDMST-----YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTI  214 (406)
Q Consensus       141 ~~~~~~h~~~V~~l~~~~~g-~~l~sgs~d~~i~vwd~~~-----~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i  214 (406)
                      ...+++|.+.|++|+|++++ ++|+||+.|++|++||+.+     +.....+.+|...|.+++|+|++++|++|+.|++|
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            34678999999999999865 7999999999999999875     34567889999999999999999999999999999


Q ss_pred             EEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEE---ecCCceEEEEEeCCCCCcccc
Q psy226          215 KMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL---RGHDHTVECVAWAPGVASESI  291 (406)
Q Consensus       215 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~  291 (406)
                      ++||+.++.+...+.+|...|.+++|+|++++|++|+.|++|++||+.........   .+|...|.++.|+|+.     
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----  529 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT-----  529 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS-----
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC-----
Confidence            99999999999999999999999999999999999999999999998654332222   4688899999999842     


Q ss_pred             ccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcccee
Q psy226          292 SEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKT  371 (406)
Q Consensus       292 ~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~  371 (406)
                                 ....+++|+.|++|++||++++++...+.+|...|++++|+|+|++|++|+.||+|++||+.+++.+..
T Consensus       530 -----------~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~  598 (694)
T 3dm0_A          530 -----------LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS  598 (694)
T ss_dssp             -----------SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC
T ss_pred             -----------CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence                       235799999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             eccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          372 LEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       372 l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +..+ ..|.+++|+|++.+|++++ |+.|++||++
T Consensus       599 ~~~~-~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~  631 (694)
T 3dm0_A          599 LEAN-SVIHALCFSPNRYWLCAAT-EHGIKIWDLE  631 (694)
T ss_dssp             CBCS-SCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred             ecCC-CcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence            7654 5799999999999888765 6679999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.4e-38  Score=295.35  Aligned_cols=243  Identities=19%  Similarity=0.327  Sum_probs=222.2

Q ss_pred             ecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q psy226          144 LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ--CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT  221 (406)
Q Consensus       144 ~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~  221 (406)
                      +..|.++|.+++|+|++++|++|+.|+.|++||+.+++  .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            44588999999999999999999999999999999887  8889999999999999999999999999999999999988


Q ss_pred             CeEEEE--eecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc----eeEEecCCceEEEEEeCCCCCcccccccc
Q psy226          222 GYCVKT--LTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET----KAELRGHDHTVECVAWAPGVASESISEAA  295 (406)
Q Consensus       222 ~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  295 (406)
                      +.....  +..|...|.+++|+|++++|++++.|+.|++||+.....    ......|...|.+++|+|           
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------  152 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-----------  152 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-----------
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-----------
Confidence            875444  467899999999999999999999999999999987763    233357889999999998           


Q ss_pred             CCCCCCCCCCEEEEEeCCCcEEEEEC------------------CCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCe
Q psy226          296 GRPPGQGGGPYLATGSRDKTIKLWDV------------------GSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT  357 (406)
Q Consensus       296 ~~~~~~~~~~~l~s~~~d~~i~lwd~------------------~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~  357 (406)
                             ++.++++++.|+.|++||+                  ..++++..+.+|...|.+++|+|++++|++++.|+.
T Consensus       153 -------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  225 (372)
T 1k8k_C          153 -------NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST  225 (372)
T ss_dssp             -------TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred             -------CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE
Confidence                   4678999999999999995                  467889999999999999999999999999999999


Q ss_pred             EEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          358 LRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       358 i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |++||+.+++.+..+..|...|.+++|+|++.+|++| .||.|++|++
T Consensus       226 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~  272 (372)
T 1k8k_C          226 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTY  272 (372)
T ss_dssp             EEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred             EEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence            9999999999999999999999999999999999888 8999999996

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.7e-39  Score=301.67  Aligned_cols=251  Identities=18%  Similarity=0.236  Sum_probs=227.7

Q ss_pred             ceEEeccCCCCeEEEEEcCC----C---CEEEEEeCCCcEEEEEcCCCcE-----EEEeccc-----ccCeeeEEEC---
Q psy226           98 EKFALSGHRSPVIKVIFHPV----F---SLMASCSEDATIRLWDYETGEY-----ERALHGH-----LDSVQDIAFD---  157 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~----~---~~latgs~dg~v~vwd~~~~~~-----~~~~~~h-----~~~V~~l~~~---  157 (406)
                      ....+.+|..+|++++|+|+    +   .+|++|+.||.|++||+.+++.     ...+.+|     ...|.+++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            45667899999999999999    9   9999999999999999998886     7788888     5999999999   


Q ss_pred             -CCCCE-EEEEeCCCcEEEEeCCC------CeEEE-----EEe-------cCCcceEEEEEecCCCEEEEEeCCCcEEEE
Q psy226          158 -QSGKL-LVSCSADMSLKLWDMST------YQCLK-----TMQ-------GHDHNVTGVAFLPNSDFVLSASRDKTIKMW  217 (406)
Q Consensus       158 -~~g~~-l~sgs~d~~i~vwd~~~------~~~~~-----~~~-------~h~~~v~~~~~~p~~~~l~s~s~d~~i~iw  217 (406)
                       |++++ |++|+.|+.|++||+.+      ++.+.     .+.       .|...|.+++|+|++ ++++++.|+.|++|
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS  212 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence             99999 99999999999999987      55555     664       488899999999999 99999999999999


Q ss_pred             EcCCCeEEEEeec---C---CccEEEEEECCCCCEEEEEeCC---CeEEEEeCCCccceeEEec-------------CCc
Q psy226          218 EVATGYCVKTLTG---H---REWVRQIKVSPDGTLLASCSND---HTARVWSLATKETKAELRG-------------HDH  275 (406)
Q Consensus       218 d~~~~~~~~~~~~---~---~~~v~~l~~~~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~-------------~~~  275 (406)
                      |++++..+..+..   |   ...|.+++|+|++++|++++.|   +.|++||+++.+.+..+.+             |..
T Consensus       213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (397)
T 1sq9_A          213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS  292 (397)
T ss_dssp             ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred             ECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence            9999999999998   9   9999999999999999999999   9999999999998888988             999


Q ss_pred             eEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe------CC---------------C
Q psy226          276 TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI------GH---------------D  334 (406)
Q Consensus       276 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~------~h---------------~  334 (406)
                      .|.++.|+|                  ++.+|++++.|+.|++||+++++++..+.      +|               .
T Consensus       293 ~v~~~~~~~------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  354 (397)
T 1sq9_A          293 WVMSLSFND------------------SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE  354 (397)
T ss_dssp             CEEEEEECS------------------SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred             cEEEEEECC------------------CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccC
Confidence            999999998                  46799999999999999999999999999      88               9


Q ss_pred             cCEEEEEEcCCC----------CEEEEEeCCCeEEEEeCCCCc
Q psy226          335 NWVRGVTFHPGG----------KYLVSCGDDKTLRVWDTANKR  367 (406)
Q Consensus       335 ~~v~~l~~s~~g----------~~l~sgs~d~~i~vwd~~~~~  367 (406)
                      ..|.+++|+|+|          ++|++|+.||.|++||+.+++
T Consensus       355 ~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          355 PGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             CCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             CceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            999999999998          799999999999999987753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.5e-38  Score=297.84  Aligned_cols=263  Identities=21%  Similarity=0.389  Sum_probs=218.8

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC-
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST-  179 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~-  179 (406)
                      .+.+|...|++|+|+|++++||+|+.||+|+|||+.+++....+.+|...|.+++++  +.+|++|+.|+.+++||... 
T Consensus       142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred             EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence            345788899999999999999999999999999999999999999999999998885  67999999999999999875 


Q ss_pred             CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe----EEEEeecCCccEEEEEECCCCC-EEEE--EeC
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY----CVKTLTGHREWVRQIKVSPDGT-LLAS--CSN  252 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~-~l~s--~~~  252 (406)
                      ...+..+.+|...+..+.|+|++.++++++.|+.+++||..++.    .+.....|...|.+++|+|.+. ++++  |+.
T Consensus       220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~  299 (420)
T 4gga_A          220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS  299 (420)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred             ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence            45567889999999999999999999999999999999998764    3566778999999999999664 5554  457


Q ss_pred             CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe--CCCcEEEEECCCCeEEEEE
Q psy226          253 DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS--RDKTIKLWDVGSGSLLFTL  330 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~lwd~~~~~~~~~~  330 (406)
                      |++|++||+.++.....+..|. .+.++.|.|.                  +..+++++  .|+.|+|||+.+++++..+
T Consensus       300 D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~------------------~~~lv~~sg~~d~~I~iwd~~~~~~v~~l  360 (420)
T 4gga_A          300 DRHIRIWNVCSGACLSAVDAHS-QVCSILWSPH------------------YKELISGHGFAQNQLVIWKYPTMAKVAEL  360 (420)
T ss_dssp             TCEEEEEETTTTEEEEEEECSS-CEEEEEEETT------------------TTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCccccceeecccc-ceeeeeecCC------------------CCeEEEEEecCCCEEEEEECCCCcEEEEE
Confidence            9999999999998888777654 5677888873                  44565554  7999999999999999999


Q ss_pred             eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEE
Q psy226          331 IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF  384 (406)
Q Consensus       331 ~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~  384 (406)
                      .+|.+.|++++|+|+|++|+|||.|++|+|||+......+..+.+...+....|
T Consensus       361 ~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~  414 (420)
T 4gga_A          361 KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL  414 (420)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence            999999999999999999999999999999999877666665555444433333

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.2e-39  Score=299.49  Aligned_cols=242  Identities=20%  Similarity=0.343  Sum_probs=215.1

Q ss_pred             CCCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECC-CCCEEEEEeCCCcEEEEeCCC
Q psy226          105 HRSPVIKVIFHPV----FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQ-SGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       105 h~~~V~~v~~~p~----~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~-~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      |...|++++|+|+    +.+|++|+.||.|++||+.+++....+.+|...|.+++|+| ++.+|++|+.|+.|++||+.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            6788999999999    67999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             CeEEEEE---ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee---------------------------
Q psy226          180 YQCLKTM---QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT---------------------------  229 (406)
Q Consensus       180 ~~~~~~~---~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---------------------------  229 (406)
                      ++.+..+   .+|...|.+++|+|++++|++++.|+.|++||++++.....+.                           
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            9988888   6899999999999999999999999999999998765443333                           


Q ss_pred             -cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc--------------eeEEecCCceEEEEEeCCCCCccccccc
Q psy226          230 -GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET--------------KAELRGHDHTVECVAWAPGVASESISEA  294 (406)
Q Consensus       230 -~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~  294 (406)
                       +|...|.+++|+  ++++++++.|+.|++||+.+...              ...+..|...|.+++|+|+         
T Consensus       228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------  296 (366)
T 3k26_A          228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMD---------  296 (366)
T ss_dssp             SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEEC---------
T ss_pred             cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCC---------
Confidence             399999999998  77999999999999999987644              5566677777777777762         


Q ss_pred             cCCCCCCCCCCEEEEEeCCCcEEEEECCCCe----EEEEEeCC--CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          295 AGRPPGQGGGPYLATGSRDKTIKLWDVGSGS----LLFTLIGH--DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       295 ~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~----~~~~~~~h--~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                             ..+.+|++|+.||.|++||+.+++    ....+.+|  ...|++++|+|++++|++|+.||.|++||+.
T Consensus       297 -------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          297 -------FWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             -------TTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             -------CCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence                   127899999999999999999875    45577777  7899999999999999999999999999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.7e-38  Score=301.81  Aligned_cols=248  Identities=23%  Similarity=0.441  Sum_probs=219.9

Q ss_pred             EEecccccCeeeEEECCC-CCEEEEEeCCCcEEEEeCCC----------CeEEEEEecCCcceEEEEEecCCC-EEEEEe
Q psy226          142 RALHGHLDSVQDIAFDQS-GKLLVSCSADMSLKLWDMST----------YQCLKTMQGHDHNVTGVAFLPNSD-FVLSAS  209 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~vwd~~~----------~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s  209 (406)
                      ....+|.+.|++++|+|+ +.+|++|+.||.|++||+.+          .+.+..+.+|...|.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            345679999999999997 68999999999999999976          567788899999999999999988 999999


Q ss_pred             CCCcEEEEEcCCCeE-------EEEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEeCCCc---cceeEEecCCceEE
Q psy226          210 RDKTIKMWEVATGYC-------VKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATK---ETKAELRGHDHTVE  278 (406)
Q Consensus       210 ~d~~i~iwd~~~~~~-------~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~v~  278 (406)
                      .||+|++||+.++..       ...+.+|...|.+++|+| ++.+|++++.|+.|++||+++.   .....+..|...|.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987321       456778999999999999 7889999999999999999876   56777889999999


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCcCEEEEEEcCCCC-EEEEEeCCC
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS-GSLLFTLIGHDNWVRGVTFHPGGK-YLVSCGDDK  356 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~-~~~~~~~~~h~~~v~~l~~s~~g~-~l~sgs~d~  356 (406)
                      +++|+|.                 +..++++|+.||.|++||+++ +.++..+.+|...|.+++|+|+++ +|++++.|+
T Consensus       282 ~i~~~p~-----------------~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~  344 (430)
T 2xyi_A          282 CLSFNPY-----------------SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR  344 (430)
T ss_dssp             EEEECSS-----------------CTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             EEEeCCC-----------------CCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence            9999984                 234799999999999999998 567888999999999999999985 689999999


Q ss_pred             eEEEEeCCC--------------CccceeeccccceEEEEEEeCCCC-EEEEeeCCCeEEEeecC
Q psy226          357 TLRVWDTAN--------------KRNMKTLEAHSHFVTSLDFHRAHP-YVVTGSVDKTVKVWECR  406 (406)
Q Consensus       357 ~i~vwd~~~--------------~~~~~~l~~h~~~v~~l~~~~~~~-~l~sgs~Dg~v~iw~~~  406 (406)
                      .|+|||+..              .+.+..+.+|...|++++|+|+++ +|++++.||.|++|++.
T Consensus       345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            999999976              245566778999999999999999 99999999999999863

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-39  Score=310.50  Aligned_cols=267  Identities=16%  Similarity=0.261  Sum_probs=226.6

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-cccccCeeeEEECC-CCCEEEEEeCCCcEEEEeCCC---Ce---EEE
Q psy226          113 IFHPVFSLMASCSEDATIRLWDYETGEYERAL-HGHLDSVQDIAFDQ-SGKLLVSCSADMSLKLWDMST---YQ---CLK  184 (406)
Q Consensus       113 ~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~-~~h~~~V~~l~~~~-~g~~l~sgs~d~~i~vwd~~~---~~---~~~  184 (406)
                      .|+|++..+++++      .|+ .+++....+ .+|.+.|++++|+| ++.+|++|+.|++|++||+.+   +.   ...
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  106 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL  106 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence            3778888887765      387 556777777 89999999999999 999999999999999999865   32   222


Q ss_pred             EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC---CCeEEEEeec------------CCccEEEEE--ECCCCCEE
Q psy226          185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA---TGYCVKTLTG------------HREWVRQIK--VSPDGTLL  247 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~---~~~~~~~~~~------------~~~~v~~l~--~~~~~~~l  247 (406)
                      .+ +|...|.+++|+|++++|++|+.|++|++||+.   ++.....+.+            +...+.++.  +++++.++
T Consensus       107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (437)
T 3gre_A          107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL  185 (437)
T ss_dssp             EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred             ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence            33 589999999999999999999999999999994   5555544432            344566666  66889999


Q ss_pred             EEEeCCCeEEEEeCCCccceeEEec--CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe
Q psy226          248 ASCSNDHTARVWSLATKETKAELRG--HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS  325 (406)
Q Consensus       248 ~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~  325 (406)
                      ++|+.|+.|++||+++.+....+.+  |...|.+++|+|                  ++.+|++|+.||.|++||+++++
T Consensus       186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~------------------~~~~l~s~~~dg~i~iwd~~~~~  247 (437)
T 3gre_A          186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE------------------ECCVLILGTTRGIIDIWDIRFNV  247 (437)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT------------------TSCEEEEEETTSCEEEEETTTTE
T ss_pred             EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC------------------CCCEEEEEcCCCeEEEEEcCCcc
Confidence            9999999999999999999998988  889999999998                  47789999999999999999999


Q ss_pred             EEEEEe-CCCcCEEEEEEc----CCCCEEEEEeCCCeEEEEeCCCCccceeecc--------------------------
Q psy226          326 LLFTLI-GHDNWVRGVTFH----PGGKYLVSCGDDKTLRVWDTANKRNMKTLEA--------------------------  374 (406)
Q Consensus       326 ~~~~~~-~h~~~v~~l~~s----~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~--------------------------  374 (406)
                      ++..+. +|...|.+++|+    |++.+|++|+.||.|++||+.+++.+..+.+                          
T Consensus       248 ~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  327 (437)
T 3gre_A          248 LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIR  327 (437)
T ss_dssp             EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCC
T ss_pred             EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccc
Confidence            998886 788899999665    4688999999999999999998887666653                          


Q ss_pred             ccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          375 HSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       375 h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      |...|++++|+ ++++|++|+.||.|++||++
T Consensus       328 ~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~  358 (437)
T 3gre_A          328 SLNALSTISVS-NDKILLTDEATSSIVMFSLN  358 (437)
T ss_dssp             SGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred             cCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence            55668899999 77899999999999999974

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-37  Score=295.09  Aligned_cols=248  Identities=21%  Similarity=0.364  Sum_probs=219.6

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC-CCeE
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS-TYQC  182 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~-~~~~  182 (406)
                      .|..+|++++|+|++.+|++|+.||.|++||+.+++....+.+|...|.+++|  ++.+|++|+.|+.|++||+. ....
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence            48899999999999999999999999999999999999999999999999999  46799999999999999998 5667


Q ss_pred             EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCC-CEEEEEe--CCCeEEEE
Q psy226          183 LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG-TLLASCS--NDHTARVW  259 (406)
Q Consensus       183 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~--~d~~v~vw  259 (406)
                      ...+.+|...|.+++|+|++.+|++|+.|+.|++||++++..+..+.+|...|.+++|+|++ .++++|+  .|+.|++|
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~  289 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW  289 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred             eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence            88899999999999999999999999999999999999999999999999999999999976 5566655  79999999


Q ss_pred             eCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE--EeCCCcEEEEECCCCeEEE--EEeCCCc
Q psy226          260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT--GSRDKTIKLWDVGSGSLLF--TLIGHDN  335 (406)
Q Consensus       260 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--~~~d~~i~lwd~~~~~~~~--~~~~h~~  335 (406)
                      |+.++.....+. +...+.+++|+|                  ++.++++  |+.|+.|++||+.++....  .+.+|..
T Consensus       290 d~~~~~~~~~~~-~~~~v~~~~~s~------------------~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~  350 (401)
T 4aez_A          290 NAATGARVNTVD-AGSQVTSLIWSP------------------HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT  350 (401)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECS------------------SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS
T ss_pred             ECCCCCEEEEEe-CCCcEEEEEECC------------------CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC
Confidence            999988877775 567899999998                  4677888  4489999999999876544  4679999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee
Q psy226          336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL  372 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l  372 (406)
                      .|.+++|+|+|++|++++.||.|++||+.+++.+...
T Consensus       351 ~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          351 RVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             CCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            9999999999999999999999999999988776554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.1e-37  Score=289.92  Aligned_cols=275  Identities=13%  Similarity=0.173  Sum_probs=220.2

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEE-EEEeCCCcEEEEeCCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL-VSCSADMSLKLWDMST  179 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l-~sgs~d~~i~vwd~~~  179 (406)
                      .+.+|..+|++++|+|++++||+|+.+| ++|||..+++.....  +...+..+++.++++.+ ++|+.|++|++||+.+
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            4578999999999999999999998775 789999887655443  33358888999988877 5677889999999999


Q ss_pred             CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC-eEEEEeecCCccEEEEEECCCCCEEEE--EeCCCeE
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG-YCVKTLTGHREWVRQIKVSPDGTLLAS--CSNDHTA  256 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s--~~~d~~v  256 (406)
                      ++++..+. +...|.+++|+++.  ++++ .|+.|++||+.++ ..+..+..   ....+++++  .+++.  |+.||.|
T Consensus        91 ~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v  161 (355)
T 3vu4_A           91 KQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQI  161 (355)
T ss_dssp             TEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCE
T ss_pred             CcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEE
Confidence            99988886 66799999998763  4443 4789999999988 66655554   344566777  56655  5899999


Q ss_pred             EEEeCCCcc---------------c-eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCc-EEEE
Q psy226          257 RVWSLATKE---------------T-KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT-IKLW  319 (406)
Q Consensus       257 ~vwd~~~~~---------------~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~lw  319 (406)
                      ++||+.+..               + ...+.+|...|.+++|+|                  ++.+|++|+.|++ |++|
T Consensus       162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~------------------~g~~l~s~s~d~~~v~iw  223 (355)
T 3vu4_A          162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR------------------KSDMVATCSQDGTIIRVF  223 (355)
T ss_dssp             EEEECCC------------------CCEEECCCSSCEEEEEECT------------------TSSEEEEEETTCSEEEEE
T ss_pred             EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC------------------CCCEEEEEeCCCCEEEEE
Confidence            999998754               2 678899999999999998                  4789999999998 9999


Q ss_pred             ECCCCeEEEEEe-C-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--ceeecc---------------------
Q psy226          320 DVGSGSLLFTLI-G-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN--MKTLEA---------------------  374 (406)
Q Consensus       320 d~~~~~~~~~~~-~-h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~--~~~l~~---------------------  374 (406)
                      |+++++++..+. + |...|.+++|+|+|++|++|+.|++|++||+..+..  ...+..                     
T Consensus       224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (355)
T 3vu4_A          224 KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD  303 (355)
T ss_dssp             ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC
T ss_pred             ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC
Confidence            999999999998 6 999999999999999999999999999999976431  111111                     


Q ss_pred             ccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          375 HSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       375 h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +......++|++++.+|++++.||.+++|++
T Consensus       304 ~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          304 KHVRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             TTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            1112367899999999999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.2e-38  Score=294.46  Aligned_cols=251  Identities=16%  Similarity=0.253  Sum_probs=217.2

Q ss_pred             EEcCCCcEEEEecccccCeeeEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEe--cCCcceEEEEEec-CCCEEEEE
Q psy226          133 WDYETGEYERALHGHLDSVQDIAFDQSG-KLLVSCSADMSLKLWDMSTYQCLKTMQ--GHDHNVTGVAFLP-NSDFVLSA  208 (406)
Q Consensus       133 wd~~~~~~~~~~~~h~~~V~~l~~~~~g-~~l~sgs~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~p-~~~~l~s~  208 (406)
                      |+..+.+....+.+|...|++++|+|++ ++|++|+.|+.|++||+.+++....+.  +|...|.+++|+| ++++|+++
T Consensus        58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred             ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence            3445556677888999999999999999 999999999999999999877766665  6999999999999 67899999


Q ss_pred             eCCCcEEEEEcCCCeEEEEeecC---CccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCC
Q psy226          209 SRDKTIKMWEVATGYCVKTLTGH---REWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPG  285 (406)
Q Consensus       209 s~d~~i~iwd~~~~~~~~~~~~~---~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  285 (406)
                      +.|++|++||+.+ ..+..+..+   ...|.+++|+|++++|++|+.|+.|++||+ +......+.+|...|.+++|+|+
T Consensus       138 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~  215 (383)
T 3ei3_B          138 SIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPR  215 (383)
T ss_dssp             ETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSS
T ss_pred             eCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCC
Confidence            9999999999986 555565544   478999999999999999999999999999 56678888999999999999984


Q ss_pred             CCccccccccCCCCCCCCCC-EEEEEeCCCcEEEEECCC----CeEEEEEeCCCcCEEEEEEcC-CCCEEEEEeCCCeEE
Q psy226          286 VASESISEAAGRPPGQGGGP-YLATGSRDKTIKLWDVGS----GSLLFTLIGHDNWVRGVTFHP-GGKYLVSCGDDKTLR  359 (406)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~lwd~~~----~~~~~~~~~h~~~v~~l~~s~-~g~~l~sgs~d~~i~  359 (406)
                                        +. ++++|+.|+.|++||+++    +.++..+ +|...|.+++|+| +|++|++++.|+.|+
T Consensus       216 ------------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          216 ------------------CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             ------------------CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred             ------------------CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence                              45 899999999999999987    6677666 6999999999999 999999999999999


Q ss_pred             EEeCCCCccceeecccc-----------------ceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          360 VWDTANKRNMKTLEAHS-----------------HFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       360 vwd~~~~~~~~~l~~h~-----------------~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +||+.+++....+..|.                 ..+..++|+|++++  +|+.||.|++||++
T Consensus       277 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~  338 (383)
T 3ei3_B          277 VYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDAN  338 (383)
T ss_dssp             EEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETT
T ss_pred             EEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecC
Confidence            99999988877776553                 23445677777776  78899999999963

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.8e-37  Score=283.94  Aligned_cols=245  Identities=20%  Similarity=0.405  Sum_probs=225.2

Q ss_pred             EEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q psy226          141 ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA  220 (406)
Q Consensus       141 ~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~  220 (406)
                      ...+.+|.+.|++++|+|+|++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeecCCccEEEEEECCCCCEEEEEeCC-----CeEEEEeCCCcc-----------ceeEEecCCc--eEEEEEe
Q psy226          221 TGYCVKTLTGHREWVRQIKVSPDGTLLASCSND-----HTARVWSLATKE-----------TKAELRGHDH--TVECVAW  282 (406)
Q Consensus       221 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----~~v~vwd~~~~~-----------~~~~~~~~~~--~v~~~~~  282 (406)
                      ++.++..+. +...+.+++|+|++.++++++.+     +.|++||+....           ....+..|..  .+.+++|
T Consensus       105 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (369)
T 3zwl_B          105 NGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW  183 (369)
T ss_dssp             TCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred             CCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence            999988887 88899999999999999999999     999999987653           3344555655  8899999


Q ss_pred             CCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEE
Q psy226          283 APGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS-GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVW  361 (406)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~-~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vw  361 (406)
                      +|                  ++.++++++.|+.|++||+++ +..+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus       184 ~~------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~  245 (369)
T 3zwl_B          184 ST------------------KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLV  245 (369)
T ss_dssp             CG------------------GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cC------------------CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEE
Confidence            87                  467899999999999999998 78889999999999999999999999999999999999


Q ss_pred             eCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCC--------------eEEEeec
Q psy226          362 DTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDK--------------TVKVWEC  405 (406)
Q Consensus       362 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg--------------~v~iw~~  405 (406)
                      |+.+++.+..+. +...+.+++|+|+++++++++.++              .+++||.
T Consensus       246 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~  302 (369)
T 3zwl_B          246 DVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK  302 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred             ECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence            999998888887 667899999999999999999998              8999986

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.2e-38  Score=291.24  Aligned_cols=247  Identities=18%  Similarity=0.228  Sum_probs=216.9

Q ss_pred             eccCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCCc-EEEEecccccCeeeEE------ECCCCCEEEEEeCCCc
Q psy226          102 LSGHRSPVIKVIFHPV---FSLMASCSEDATIRLWDYETGE-YERALHGHLDSVQDIA------FDQSGKLLVSCSADMS  171 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~---~~~latgs~dg~v~vwd~~~~~-~~~~~~~h~~~V~~l~------~~~~g~~l~sgs~d~~  171 (406)
                      ..+|..+|++++|+|+   +.+|++|+.||.|++||+.+++ ....+.+|...|.+++      |+|++++|++|+.|+.
T Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~  140 (357)
T 3i2n_A           61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT  140 (357)
T ss_dssp             EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred             eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence            3479999999999999   6999999999999999999988 7888999999999995      5789999999999999


Q ss_pred             EEEEeCCCCe-EEEEEecCCc----ceEEEE----EecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC
Q psy226          172 LKLWDMSTYQ-CLKTMQGHDH----NVTGVA----FLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP  242 (406)
Q Consensus       172 i~vwd~~~~~-~~~~~~~h~~----~v~~~~----~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  242 (406)
                      |++||+.+++ .+..+..|..    .+.+++    |+|+++++++++.|+.|++||++++.... ...|...|.+++|+|
T Consensus       141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~  219 (357)
T 3i2n_A          141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDR  219 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESC
T ss_pred             EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCC
Confidence            9999999876 6677766554    788888    67899999999999999999999988744 467889999999999


Q ss_pred             ---CCCEEEEEeCCCeEEEEeCCCccceeEEe-----cCCceEEEEEeCCCCCccccccccCCCCCCCCCC-EEEEEeCC
Q psy226          243 ---DGTLLASCSNDHTARVWSLATKETKAELR-----GHDHTVECVAWAPGVASESISEAAGRPPGQGGGP-YLATGSRD  313 (406)
Q Consensus       243 ---~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d  313 (406)
                         ++.++++|+.||.|++||+++......+.     +|...|.+++|+|+                  +. ++++|+.|
T Consensus       220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------~~~~l~~~~~d  281 (357)
T 3i2n_A          220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ------------------NRELFLTAGGA  281 (357)
T ss_dssp             SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT------------------EEEEEEEEETT
T ss_pred             CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC------------------CCcEEEEEeCC
Confidence               99999999999999999998876665554     89999999999983                  45 79999999


Q ss_pred             CcEEEEECCCC-------------------eEEEEEeCCCcCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCc
Q psy226          314 KTIKLWDVGSG-------------------SLLFTLIGHDNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTANKR  367 (406)
Q Consensus       314 ~~i~lwd~~~~-------------------~~~~~~~~h~~~v~~l~~s~~g~~l~-sgs~d~~i~vwd~~~~~  367 (406)
                      |.|++||++.+                   +++..+.+|...|++++|+|+|++|+ +|+.||.|++||+.+..
T Consensus       282 g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             CcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            99999998753                   46778899999999999999999998 89999999999997654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-38  Score=309.91  Aligned_cols=246  Identities=11%  Similarity=0.048  Sum_probs=206.8

Q ss_pred             EeccCCCCeEEEEEcCC------CCEEEEEeCCCcEEEEEcCCCcE-----------EEEecccccCeeeEEECCCCCEE
Q psy226          101 ALSGHRSPVIKVIFHPV------FSLMASCSEDATIRLWDYETGEY-----------ERALHGHLDSVQDIAFDQSGKLL  163 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~------~~~latgs~dg~v~vwd~~~~~~-----------~~~~~~h~~~V~~l~~~~~g~~l  163 (406)
                      .+.+|.+.|.+++|+|+      +.+||+|+.||+|++||+.++..           ...+.+|...|++++|+++ ..|
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l  280 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV  280 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence            35678899999999997      57999999999999999987642           2367889999999999986 489


Q ss_pred             EEEeCCCcEEEEeCCCCe-EEEEEecCCcceEEE--EEecCC-CEEEEEeCCCcEEEEEcCCCeEEEEeecCCc--cEEE
Q psy226          164 VSCSADMSLKLWDMSTYQ-CLKTMQGHDHNVTGV--AFLPNS-DFVLSASRDKTIKMWEVATGYCVKTLTGHRE--WVRQ  237 (406)
Q Consensus       164 ~sgs~d~~i~vwd~~~~~-~~~~~~~h~~~v~~~--~~~p~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~--~v~~  237 (406)
                      ++|+.||+|++||+.++. ....+.+|...|.++  .|+|++ .+|++||.|++|++||++++.+...+.+|..  .|.+
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~  360 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVP  360 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCC
T ss_pred             EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccc
Confidence            999999999999998653 445688999999999  567887 8999999999999999999888777777754  5789


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEE
Q psy226          238 IKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIK  317 (406)
Q Consensus       238 l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  317 (406)
                      ++|+|++..+++++.|++|++||+++......+.+|...|.+++|+|+                  +.+|++|+.|++|+
T Consensus       361 v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~------------------g~~l~Sgs~Dgtv~  422 (524)
T 2j04_B          361 VVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL------------------HPMVLAGSADGSLI  422 (524)
T ss_dssp             EEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS------------------CCBCEEEETTTEEE
T ss_pred             eEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC------------------CCeEEEEECCCEEE
Confidence            999999999999999999999999998888888999999999999983                  66788888898888


Q ss_pred             EEECCC--------------------------------------------CeEEEEEeCCCcCEEEEEEcCCCC---EEE
Q psy226          318 LWDVGS--------------------------------------------GSLLFTLIGHDNWVRGVTFHPGGK---YLV  350 (406)
Q Consensus       318 lwd~~~--------------------------------------------~~~~~~~~~h~~~v~~l~~s~~g~---~l~  350 (406)
                      +||+..                                            +.++..+.+|...|.+|+|+|++.   .++
T Consensus       423 lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lA  502 (524)
T 2j04_B          423 ITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYA  502 (524)
T ss_dssp             CCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEE
T ss_pred             EEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHH
Confidence            887421                                            222345567888999999999964   999


Q ss_pred             EEeCCCeEEEEeCCC
Q psy226          351 SCGDDKTLRVWDTAN  365 (406)
Q Consensus       351 sgs~d~~i~vwd~~~  365 (406)
                      +|+.||.|+||++..
T Consensus       503 sg~~~g~vrlw~l~~  517 (524)
T 2j04_B          503 FSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EECTTSEEEEEECSC
T ss_pred             hhccCceEEEEEccc
Confidence            999999999999764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.2e-38  Score=299.71  Aligned_cols=241  Identities=19%  Similarity=0.378  Sum_probs=208.2

Q ss_pred             cccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe-----------EEEEEecCC------------cceEEEEEecCC-
Q psy226          147 HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ-----------CLKTMQGHD------------HNVTGVAFLPNS-  202 (406)
Q Consensus       147 h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~-----------~~~~~~~h~------------~~v~~~~~~p~~-  202 (406)
                      |.+.|++++|+|+|++|++|+.||.|++||+.+++           ....+.+|.            ..|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            67899999999999999999999999999998766           578889998            889999999998 


Q ss_pred             -CEEEEEeCCCcEEEEEcCCCeEE---------------------------------------EE-eecCCccEEEEEEC
Q psy226          203 -DFVLSASRDKTIKMWEVATGYCV---------------------------------------KT-LTGHREWVRQIKVS  241 (406)
Q Consensus       203 -~~l~s~s~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~l~~~  241 (406)
                       .+|++++.|++|++||+.++...                                       .. ..+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             79999999999999999765432                                       12 36899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCcc-cee-------EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC
Q psy226          242 PDGTLLASCSNDHTARVWSLATKE-TKA-------ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD  313 (406)
Q Consensus       242 ~~~~~l~s~~~d~~v~vwd~~~~~-~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  313 (406)
                      |++++|++| .|+.|++||+.+.. ...       .+.+|...|.+++|+|.                 +..+|++|+.|
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----------------~~~~l~s~~~d  248 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPN-----------------SCNTFVYSSSK  248 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSS-----------------CTTEEEEEETT
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCC-----------------CCcEEEEEeCC
Confidence            999999999 89999999998433 333       25589999999999984                 12789999999


Q ss_pred             CcEEEEECCCCeE----EEEEeCCCc------------CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-Cccceeecccc
Q psy226          314 KTIKLWDVGSGSL----LFTLIGHDN------------WVRGVTFHPGGKYLVSCGDDKTLRVWDTAN-KRNMKTLEAHS  376 (406)
Q Consensus       314 ~~i~lwd~~~~~~----~~~~~~h~~------------~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~-~~~~~~l~~h~  376 (406)
                      +.|++||+++++.    +..+.+|..            .|.+++|+|+|++|++++. +.|++||+.+ ++.+.++..|.
T Consensus       249 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~  327 (447)
T 3dw8_B          249 GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE  327 (447)
T ss_dssp             SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred             CeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence            9999999999886    778888876            8999999999999999999 9999999987 88888898886


Q ss_pred             ce---------------EEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          377 HF---------------VTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       377 ~~---------------v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ..               +..++|+|++++|++|+.||.|++||++
T Consensus       328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred             cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence            42               2348999999999999999999999973

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-38  Score=292.42  Aligned_cols=263  Identities=12%  Similarity=0.088  Sum_probs=217.2

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC---------CCeEEE
Q psy226          114 FHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS---------TYQCLK  184 (406)
Q Consensus       114 ~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~---------~~~~~~  184 (406)
                      +.+++.+|++|+.||+|++||+.+++....+.  ...|.++.|+|+   +++|+.|++|++|+..         +++.+.
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            44578899999999999999999998877776  577889999998   9999999999999765         444444


Q ss_pred             EEe-cCCcceEEEEEec--CCCEEEEEeCCCcEEEEEcCCCeEEEEee-cCCccEEEEEECCCCCEEEEEeCCCeEEEEe
Q psy226          185 TMQ-GHDHNVTGVAFLP--NSDFVLSASRDKTIKMWEVATGYCVKTLT-GHREWVRQIKVSPDGTLLASCSNDHTARVWS  260 (406)
Q Consensus       185 ~~~-~h~~~v~~~~~~p--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd  260 (406)
                      .+. +|...|.+++|+|  +++++++|+.|++|++||++++.+..... .|...+.+++|+|+|.+|++|+.||.|++||
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd  198 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN  198 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            443 6778899999999  99999999999999999999998877664 4555899999999999999999999999999


Q ss_pred             CCCccce-eEEec-CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC---CCc
Q psy226          261 LATKETK-AELRG-HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG---HDN  335 (406)
Q Consensus       261 ~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~---h~~  335 (406)
                      ++++... ..+.. |..+|.+++|+|                  ++.+|++++ |+.|++||+++++.+..+..   |..
T Consensus       199 ~~~~~~~~~~~~~~h~~~v~~l~fs~------------------~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~  259 (343)
T 3lrv_A          199 LSSPDQASSRFPVDEEAKIKEVKFAD------------------NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEF  259 (343)
T ss_dssp             SSCTTSCCEECCCCTTSCEEEEEECT------------------TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---
T ss_pred             CCCCCCCccEEeccCCCCEEEEEEeC------------------CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccc
Confidence            9998877 77887 999999999998                  477899999 55999999998876544433   333


Q ss_pred             CEE--EEEEcCCCCEEEEEeC-CCeEEEEeCCCCccceeeccccceEEEEEEeC---CCCEEEEeeCCCeEEEee
Q psy226          336 WVR--GVTFHPGGKYLVSCGD-DKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR---AHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       336 ~v~--~l~~s~~g~~l~sgs~-d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~---~~~~l~sgs~Dg~v~iw~  404 (406)
                      .+.  +++|+|+|++|++++. |+.|+||++......-..    ..+..++|.+   +...|++++.||.+.++-
T Consensus       260 ~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          260 KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             --CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence            343  6999999999999998 999999998765433222    5688899998   889999999999998863

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=277.11  Aligned_cols=242  Identities=24%  Similarity=0.366  Sum_probs=221.3

Q ss_pred             cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEE
Q psy226          139 EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE  218 (406)
Q Consensus       139 ~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd  218 (406)
                      +....+.+|.+.|++++| +++.+|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++|+.|+.|++|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            667889999999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC---eEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCcccccccc
Q psy226          219 VATG---YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAA  295 (406)
Q Consensus       219 ~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  295 (406)
                      +...   ..+..+.+|...|.+++|  ++.++++++.|+.|++||  .......+..|...+.++.|.|.          
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~----------  153 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF----------  153 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET----------
T ss_pred             eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC----------
Confidence            8654   567788899999999999  678999999999999999  56677788899999999999872          


Q ss_pred             CCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc
Q psy226          296 GRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA  374 (406)
Q Consensus       296 ~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~-h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~  374 (406)
                             ++.++++++.|+.|++||  .++....+.. |...|.+++|+|++. +++++.||.|++||+.+++.+..+..
T Consensus       154 -------~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~  223 (313)
T 3odt_A          154 -------SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG  223 (313)
T ss_dssp             -------TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             -------CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc
Confidence                   366899999999999999  5567777777 899999999999998 89999999999999999999999999


Q ss_pred             ccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          375 HSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       375 h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      |...|++++|+|++ .|++|+.||.|++||++
T Consensus       224 ~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          224 HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             CSSCEEEEEECTTS-CEEEEETTSEEEEECTT
T ss_pred             CCceEEEEEEecCC-CEEEEecCCEEEEEECC
Confidence            99999999999999 58899999999999964

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-38  Score=318.97  Aligned_cols=260  Identities=25%  Similarity=0.442  Sum_probs=221.7

Q ss_pred             EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEecCCcceEEEEEecC--CCEEEEEeCCCcEEEE
Q psy226          142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNVTGVAFLPN--SDFVLSASRDKTIKMW  217 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~iw  217 (406)
                      ..+.+|.+.|++++|+|+|++|++|+.||+|++||+.  +++....+.+|..+|.+++|+|+  +++|++|+.||+|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4578999999999999999999999999999999997  56778889999999999999988  8999999999999999


Q ss_pred             EcCCCe--EEEEeecCCccEEEEEECCC--CCEEEEEeCCCeEEEEeCCCc--cceeEEecCCceEEEEEeCCCCCcccc
Q psy226          218 EVATGY--CVKTLTGHREWVRQIKVSPD--GTLLASCSNDHTARVWSLATK--ETKAELRGHDHTVECVAWAPGVASESI  291 (406)
Q Consensus       218 d~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~  291 (406)
                      |+.++.  .+..+.+|...|.+++|+|+  +.++++|+.||.|++||+++.  .....+.+|...|.++.|+|.......
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            999987  77888899999999999999  999999999999999999876  345567789999999999984211100


Q ss_pred             ccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC----eEEEEEeCCCcCEEEEEEcCC---CCEEEEEeCCCeEEEEeCC
Q psy226          292 SEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG----SLLFTLIGHDNWVRGVTFHPG---GKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       292 ~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~----~~~~~~~~h~~~v~~l~~s~~---g~~l~sgs~d~~i~vwd~~  364 (406)
                           ......++.++++|+.||.|++||++++    .+...+.+|...|++++|+|+   +++|++|+.||.|++||+.
T Consensus       163 -----~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          163 -----EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             ---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             -----ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                 0001124678999999999999999876    567788899999999999999   9999999999999999998


Q ss_pred             CCc-----cceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          365 NKR-----NMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       365 ~~~-----~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ++.     .......|...|++++|+|++++|++|+.||.|++|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            764     333445688899999999999999999999999999963

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-38  Score=321.86  Aligned_cols=250  Identities=22%  Similarity=0.392  Sum_probs=220.0

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCcEEEEecccccCeeeEEECCC--CCEEEEEeCCCcEEEEe
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYE--TGEYERALHGHLDSVQDIAFDQS--GKLLVSCSADMSLKLWD  176 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~--~~~~~~~~~~h~~~V~~l~~~~~--g~~l~sgs~d~~i~vwd  176 (406)
                      .+.||.++|++++|+|++++|++|+.||+|+|||+.  +++....+.+|.++|.+++|+++  +++|++|+.||+|++||
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            578999999999999999999999999999999998  45667788999999999999988  99999999999999999


Q ss_pred             CCCCe--EEEEEecCCcceEEEEEecC--CCEEEEEeCCCcEEEEEcCCC--eEEEEeecCCccEEEEEECC--------
Q psy226          177 MSTYQ--CLKTMQGHDHNVTGVAFLPN--SDFVLSASRDKTIKMWEVATG--YCVKTLTGHREWVRQIKVSP--------  242 (406)
Q Consensus       177 ~~~~~--~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~--------  242 (406)
                      +.+++  ....+.+|...|.+++|+|+  ++++++|+.||+|++||+.++  .....+.+|...|.+++|+|        
T Consensus        84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~  163 (753)
T 3jro_A           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  163 (753)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------
T ss_pred             CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc
Confidence            99886  67788899999999999999  999999999999999999877  34556778999999999999        


Q ss_pred             -----CCCEEEEEeCCCeEEEEeCCCc----cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC
Q psy226          243 -----DGTLLASCSNDHTARVWSLATK----ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD  313 (406)
Q Consensus       243 -----~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  313 (406)
                           ++.++++|+.||.|++||+++.    .....+.+|...|.+++|+|+.               ..+.++++|+.|
T Consensus       164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---------------~~~~~l~s~s~D  228 (753)
T 3jro_A          164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV---------------LLRSYLASVSQD  228 (753)
T ss_dssp             ---CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC---------------SSSEEEEEEESS
T ss_pred             cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCC---------------CCCCEEEEEecC
Confidence                 5899999999999999999876    3456778899999999999841               016789999999


Q ss_pred             CcEEEEECCCCe-----EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy226          314 KTIKLWDVGSGS-----LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       314 ~~i~lwd~~~~~-----~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~  365 (406)
                      |.|++||+.++.     .+....+|...|++++|+|+|++|++|+.||.|++||+.+
T Consensus       229 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            999999998864     3334456888999999999999999999999999999875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.1e-37  Score=294.50  Aligned_cols=250  Identities=22%  Similarity=0.432  Sum_probs=223.2

Q ss_pred             EEeccCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCC----------CcEEEEecccccCeeeEEECCCCC-EEEEEe
Q psy226          100 FALSGHRSPVIKVIFHPV-FSLMASCSEDATIRLWDYET----------GEYERALHGHLDSVQDIAFDQSGK-LLVSCS  167 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~-~~~latgs~dg~v~vwd~~~----------~~~~~~~~~h~~~V~~l~~~~~g~-~l~sgs  167 (406)
                      ..+.+|.++|++++|+|+ +.+||+|+.||.|++||+.+          ......+.+|...|.+++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            446689999999999998 68999999999999999986          566778889999999999999998 999999


Q ss_pred             CCCcEEEEeCCCCeE-------EEEEecCCcceEEEEEec-CCCEEEEEeCCCcEEEEEcCCC---eEEEEeecCCccEE
Q psy226          168 ADMSLKLWDMSTYQC-------LKTMQGHDHNVTGVAFLP-NSDFVLSASRDKTIKMWEVATG---YCVKTLTGHREWVR  236 (406)
Q Consensus       168 ~d~~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~~~~~v~  236 (406)
                      .||+|++||+.++..       ...+.+|...|.+++|+| ++.++++++.|+.|++||++++   ..+..+..|...|+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999986321       356778999999999999 6789999999999999999987   57778889999999


Q ss_pred             EEEECCCCC-EEEEEeCCCeEEEEeCCC-ccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC
Q psy226          237 QIKVSPDGT-LLASCSNDHTARVWSLAT-KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK  314 (406)
Q Consensus       237 ~l~~~~~~~-~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  314 (406)
                      +++|+|++. ++++|+.||.|++||+++ ...+..+..|...|.++.|+|.                 +..++++++.|+
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~-----------------~~~~l~s~~~d~  344 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-----------------NETILASSGTDR  344 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSS-----------------CTTEEEEEETTS
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCC-----------------CCCEEEEEeCCC
Confidence            999999987 689999999999999987 5668888999999999999984                 235799999999


Q ss_pred             cEEEEECCC--------------CeEEEEEeCCCcCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC
Q psy226          315 TIKLWDVGS--------------GSLLFTLIGHDNWVRGVTFHPGGK-YLVSCGDDKTLRVWDTANK  366 (406)
Q Consensus       315 ~i~lwd~~~--------------~~~~~~~~~h~~~v~~l~~s~~g~-~l~sgs~d~~i~vwd~~~~  366 (406)
                      .|++||+..              ..++..+.+|...|++++|+|+++ +|++++.||.|+||++...
T Consensus       345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            999999976              467888889999999999999999 8999999999999998754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-38  Score=303.08  Aligned_cols=260  Identities=9%  Similarity=0.031  Sum_probs=218.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      -...|.+|+|+|||+++||++.|++|+  |...+   +.+.+|...|.+++|+|+|       .++.+.+|+..... ..
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~~   80 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-LL   80 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-SS
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCCce-Ee
Confidence            346789999999999999999999999  75544   4457999999999999998       56776666654322 11


Q ss_pred             EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCc-----cEEEEEECCCCCEEEEEeCCCeEEEE
Q psy226          185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE-----WVRQIKVSPDGTLLASCSNDHTARVW  259 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~s~~~d~~v~vw  259 (406)
                      ++ .|...|.+++|+|+|..|++++.||+|++||..+  ++..+. |..     .+.+++|+|||++||+|+.||+|++|
T Consensus        81 ~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW  156 (588)
T 2j04_A           81 NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF  156 (588)
T ss_dssp             TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred             ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence            22 4578899999999999999999999999999654  666677 665     49999999999999999999999999


Q ss_pred             eCCCccc-------eeEE----ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE--
Q psy226          260 SLATKET-------KAEL----RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL--  326 (406)
Q Consensus       260 d~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~--  326 (406)
                      |+.++..       +..+    .+|...|.+++|+|+                  |  +++++.|++|++||+..+..  
T Consensus       157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd------------------g--Laass~D~tVrlWd~~~~~~~~  216 (588)
T 2j04_A          157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED------------------V--LVAALSNNSVFSMTVSASSHQP  216 (588)
T ss_dssp             ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT------------------E--EEEEETTCCEEEECCCSSSSCC
T ss_pred             ECCCCccccccceeeeeeecccccccccEEEEEEcCC------------------c--EEEEeCCCeEEEEECCCCcccc
Confidence            9988753       4555    677889999999983                  5  88999999999999988763  


Q ss_pred             -EEEE-eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEE--eCCCCEEEEeeCCCeEEE
Q psy226          327 -LFTL-IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF--HRAHPYVVTGSVDKTVKV  402 (406)
Q Consensus       327 -~~~~-~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~--~~~~~~l~sgs~Dg~v~i  402 (406)
                       ..++ .+|...|.+++|+  |+.|++++ +++|++||+.+++......+|...|.+++|  +|++..|++++.||+ ++
T Consensus       217 ~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-kl  292 (588)
T 2j04_A          217 VSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KV  292 (588)
T ss_dssp             CEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EE
T ss_pred             ceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EE
Confidence             3566 4788899999999  68999997 699999999987764333379999999999  999999999999999 99


Q ss_pred             eec
Q psy226          403 WEC  405 (406)
Q Consensus       403 w~~  405 (406)
                      |..
T Consensus       293 w~~  295 (588)
T 2j04_A          293 LLE  295 (588)
T ss_dssp             EES
T ss_pred             Eee
Confidence            975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.9e-37  Score=289.42  Aligned_cols=244  Identities=15%  Similarity=0.191  Sum_probs=201.2

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEE-----------eCCCcEEEEEcCCCcEE----EEe-----cccccCeeeEEECCC
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASC-----------SEDATIRLWDYETGEYE----RAL-----HGHLDSVQDIAFDQS  159 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latg-----------s~dg~v~vwd~~~~~~~----~~~-----~~h~~~V~~l~~~~~  159 (406)
                      ..|.+|...|.+++++  ++.+++|           +.|+++++|++.+....    ...     ..+...+.+++|+||
T Consensus        67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD  144 (365)
T 4h5i_A           67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE  144 (365)
T ss_dssp             EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred             EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence            4577899999888765  4555554           56888999998765321    111     123456889999999


Q ss_pred             CCEEEEEe--CCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEE--EeecCCccE
Q psy226          160 GKLLVSCS--ADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVK--TLTGHREWV  235 (406)
Q Consensus       160 g~~l~sgs--~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~~~~~v  235 (406)
                      |++|++++  .|++|+|||+.+++++..+. |...|.+++|+|+|+++++++.| .+.+|+..++..+.  ...+|...|
T Consensus       145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v  222 (365)
T 4h5i_A          145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSL  222 (365)
T ss_dssp             SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEE
T ss_pred             CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCE
Confidence            99987554  68999999999999888875 77889999999999999999855 56677777776554  345788899


Q ss_pred             EEEEECCCCCEEEEEeCCC----eEEEEeCCCccc----eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEE
Q psy226          236 RQIKVSPDGTLLASCSNDH----TARVWSLATKET----KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYL  307 (406)
Q Consensus       236 ~~l~~~~~~~~l~s~~~d~----~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  307 (406)
                      .+++|+|++.++++++.|+    .+++|++.....    ...+.+|...|.+++|+|                  +|.+|
T Consensus       223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp------------------dg~~l  284 (365)
T 4h5i_A          223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM------------------KGELA  284 (365)
T ss_dssp             EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT------------------TSCEE
T ss_pred             EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC------------------CCCce
Confidence            9999999999999999887    688898865543    345778999999999998                  47899


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEE-eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy226          308 ATGSRDKTIKLWDVGSGSLLFTL-IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       308 ~s~~~d~~i~lwd~~~~~~~~~~-~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~  365 (406)
                      |+|+.|++|+|||+.+++++..+ .+|...|++|+|+|||++|+|||.|++|+|||+..
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999999999999886 68999999999999999999999999999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=287.56  Aligned_cols=281  Identities=21%  Similarity=0.305  Sum_probs=209.3

Q ss_pred             cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCC---CEEEEEeCCCcEEEEeCCC
Q psy226          104 GHRSPVIKVIFHP-VFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG---KLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       104 ~h~~~V~~v~~~p-~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g---~~l~sgs~d~~i~vwd~~~  179 (406)
                      +|..+|++++|+| ++.+|++|+.||.|++||+.+++....+. +...+.++.|++.+   .++++|+.|+.|++||+.+
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            6999999999999 77899999999999999999998877766 77889999998854   5999999999999999999


Q ss_pred             CeEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCe-EEEEe---------------ecCCccEEEEEECC
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGY-CVKTL---------------TGHREWVRQIKVSP  242 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~-~~~~~---------------~~~~~~v~~l~~~~  242 (406)
                      ++.+..+.+|...|.+++|+|++. ++++|+.|+.|++||++++. ++..+               .+|...|.+++|+|
T Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  255 (408)
T 4a11_B          176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS  255 (408)
T ss_dssp             SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred             cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence            999999999999999999999998 58999999999999998765 44444               57889999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCccceeEEecCCceE----EEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEE
Q psy226          243 DGTLLASCSNDHTARVWSLATKETKAELRGHDHTV----ECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL  318 (406)
Q Consensus       243 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~l  318 (406)
                      ++++|++++.|+.|++||+.+......+..+....    ....+.                 ...+..+++++.|+.|++
T Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~i~v  318 (408)
T 4a11_B          256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS-----------------CGCSSEFVFVPYGSTIAV  318 (408)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEEC-----------------CSSSSCEEEEEETTEEEE
T ss_pred             CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEe-----------------cCCCceEEEEecCCEEEE
Confidence            99999999999999999998876554333221100    000000                 112445777888999999


Q ss_pred             EECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeC-CCCEEEEeeCC
Q psy226          319 WDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR-AHPYVVTGSVD  397 (406)
Q Consensus       319 wd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~-~~~~l~sgs~D  397 (406)
                      ||+.+++++..+.+|...|++++|+|++++|++|+.||.|++||+.+++.+.....+..   ...+.+ ......+++.|
T Consensus       319 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  395 (408)
T 4a11_B          319 YTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEE  395 (408)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------
T ss_pred             EECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCcc
Confidence            99999999999999999999999999999999999999999999999887765543322   122333 23345667889


Q ss_pred             CeEEEeec
Q psy226          398 KTVKVWEC  405 (406)
Q Consensus       398 g~v~iw~~  405 (406)
                      +.+++|+.
T Consensus       396 ~~~~~W~~  403 (408)
T 4a11_B          396 GGTSAWSH  403 (408)
T ss_dssp             --------
T ss_pred             CceeecCC
Confidence            99999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=8.8e-36  Score=284.22  Aligned_cols=278  Identities=18%  Similarity=0.188  Sum_probs=240.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE-----EecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER-----ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~-----~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~  181 (406)
                      ..+.+++|+|++.++++++.|+.|++||..+++...     .+.+|...|.+++|++++.++++++.|+.|++||+.+++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            446699999988888999999999999999998877     345788899999999999999999999999999999999


Q ss_pred             EEEEEecCCcceEEEEEecCCCEEE-EEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe--------C
Q psy226          182 CLKTMQGHDHNVTGVAFLPNSDFVL-SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS--------N  252 (406)
Q Consensus       182 ~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~--------~  252 (406)
                      .+..+..|...+.+++|+|+++.++ +++.|+.|++||+.++..+..+..+ ..+.+++|+|+|+.+++++        .
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccC
Confidence            9999999999999999999999885 4558999999999999888887765 4589999999999999888        5


Q ss_pred             CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCC-CEEEEEeCCCcEEEEECCCCeEEEEEe
Q psy226          253 DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGG-PYLATGSRDKTIKLWDVGSGSLLFTLI  331 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~lwd~~~~~~~~~~~  331 (406)
                      |+.|++||+.+++....+ .|...+..++|+|+                  + .++++++.|+.|++||+.+++.+..+.
T Consensus       282 dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~------------------g~~l~~~~~~~~~v~v~d~~~~~~~~~~~  342 (433)
T 3bws_A          282 GGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNT------------------ENKIYVSDMCCSKIEVYDLKEKKVQKSIP  342 (433)
T ss_dssp             CEEEEEEETTTTEEEEEE-EEEECEEEEEECSS------------------TTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEEECCCCcEEeec-cCCCCcceEEECCC------------------CCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence            889999999887665544 45567888999883                  4 356777899999999999998887775


Q ss_pred             CCCcCEEEEEEcCCCCEEEEEeC---------------CCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeC
Q psy226          332 GHDNWVRGVTFHPGGKYLVSCGD---------------DKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSV  396 (406)
Q Consensus       332 ~h~~~v~~l~~s~~g~~l~sgs~---------------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~  396 (406)
                       +...+.+++|+|+|++|++++.               ||.|++||..+++.+..+..+ ..+.+++|+|++++|++++.
T Consensus       343 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~  420 (433)
T 3bws_A          343 -VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDF  420 (433)
T ss_dssp             -CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEET
T ss_pred             -CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEEC
Confidence             6778999999999999988876               579999999999888888764 46899999999999988764


Q ss_pred             -CCeEEEeecC
Q psy226          397 -DKTVKVWECR  406 (406)
Q Consensus       397 -Dg~v~iw~~~  406 (406)
                       |+.|++|++.
T Consensus       421 ~d~~i~v~~~~  431 (433)
T 3bws_A          421 LDHQIRVYRRD  431 (433)
T ss_dssp             TTTEEEEEEET
T ss_pred             CCCeEEEEEec
Confidence             9999999963

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.5e-36  Score=280.06  Aligned_cols=242  Identities=16%  Similarity=0.157  Sum_probs=214.7

Q ss_pred             EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEE
Q psy226          142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ---CLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMW  217 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iw  217 (406)
                      ....+|.+.|.+++|+|++++|++|+.|+.|++||+.+++   ....+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3446899999999999999999999999999999998766   3456668999999999999999 99999999999999


Q ss_pred             Ec-CCCeEEEEeec--CCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC---------ccceeEEecCCceEEEEEeCCC
Q psy226          218 EV-ATGYCVKTLTG--HREWVRQIKVSPDGTLLASCSNDHTARVWSLAT---------KETKAELRGHDHTVECVAWAPG  285 (406)
Q Consensus       218 d~-~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~  285 (406)
                      |+ .++.. ..+.+  |...|.+++|+| +.++++++.|+.|++||+++         .+....+. |...+.+++|+|+
T Consensus        85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~  161 (342)
T 1yfq_A           85 DLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS  161 (342)
T ss_dssp             CSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred             EeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence            99 87754 77788  999999999999 99999999999999999987         66565555 8889999999873


Q ss_pred             CCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC-Ce--EEEEEeCCCcCEEEEEEcC-CCCEEEEEeCCCeEEEE
Q psy226          286 VASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS-GS--LLFTLIGHDNWVRGVTFHP-GGKYLVSCGDDKTLRVW  361 (406)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~-~~--~~~~~~~h~~~v~~l~~s~-~g~~l~sgs~d~~i~vw  361 (406)
                                          .+++++.|+.|++||+++ +.  .......|...|.+++|+| ++++|++|+.||.|++|
T Consensus       162 --------------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~  221 (342)
T 1yfq_A          162 --------------------RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE  221 (342)
T ss_dssp             --------------------EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred             --------------------cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEE
Confidence                                289999999999999988 54  3345567888999999999 99999999999999999


Q ss_pred             eCCCC------ccceeeccccc---------eEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          362 DTANK------RNMKTLEAHSH---------FVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       362 d~~~~------~~~~~l~~h~~---------~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      |+...      +....+..|..         .|.+++|+|++++|++|+.||.|++||++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence            99876      77778888765         89999999999999999999999999974

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.4e-37  Score=295.76  Aligned_cols=261  Identities=22%  Similarity=0.281  Sum_probs=202.3

Q ss_pred             EeccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEeccc--ccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226          101 ALSGHRSPVIKVIFHP-VFSLMASCSEDATIRLWDYETGEYERALHGH--LDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p-~~~~latgs~dg~v~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      .+.||.++|++|+|+| ++.+|+||+.||+|++||+.++........|  ...+.+++|+|++.+|++|+.||.|++||+
T Consensus       159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~  238 (435)
T 4e54_B          159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM  238 (435)
T ss_dssp             CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred             EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence            4568999999999998 6889999999999999999887655444433  446789999999999999999999999998


Q ss_pred             CCCeEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEE---eecCCccEEEEEECCCCCEEEEEeCC
Q psy226          178 STYQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKT---LTGHREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       178 ~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                      .. +.+..+.+|...|.+++|+|++. ++++|+.|++|++||++++.....   ..+|...|++++|+|+|.+|++|+.|
T Consensus       239 ~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D  317 (435)
T 4e54_B          239 DG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK  317 (435)
T ss_dssp             SS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS
T ss_pred             Cc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCC
Confidence            64 55678889999999999999876 788999999999999987654333   35799999999999999999999999


Q ss_pred             CeEEEEeCCCccceeEEecCCce------EEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEE
Q psy226          254 HTARVWSLATKETKAELRGHDHT------VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLL  327 (406)
Q Consensus       254 ~~v~vwd~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~  327 (406)
                      +.|++||+.+......+..|...      +....|.|......+.   ..   ......++++..++.|++||..+++.+
T Consensus       318 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~d~~~~~~~~~~~~~i~iwd~~~g~~~  391 (435)
T 4e54_B          318 SEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG---RY---PDPNFKSCTPYELRTIDVFDGNSGKMM  391 (435)
T ss_dssp             SCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEE---CC---CCTTSCCSSTTCCCCEEEECSSSCCEE
T ss_pred             CEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEE---Ec---CCCCeEEEEecCCCEEEEEECCCCcEE
Confidence            99999999988877777666532      2223444421111000   00   001112223334568999999999998


Q ss_pred             EEEe-CCCcCEEEE-EEcCCCCEEEEEeCCCeEEEEeCCCCccc
Q psy226          328 FTLI-GHDNWVRGV-TFHPGGKYLVSCGDDKTLRVWDTANKRNM  369 (406)
Q Consensus       328 ~~~~-~h~~~v~~l-~~s~~g~~l~sgs~d~~i~vwd~~~~~~~  369 (406)
                      ..+. +|...|.++ +|+|+|++|++|+ |+.|+|||+.+++..
T Consensus       392 ~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          392 CQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             EEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             EEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            8765 678888887 6999999999876 789999999887653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.8e-36  Score=288.28  Aligned_cols=257  Identities=30%  Similarity=0.539  Sum_probs=216.3

Q ss_pred             ceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226           98 EKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      ....+.+|.++|++++|  ++.+|++|+.||+|++||+.+++....+.+|...|.+++|++  ..|++|+.|++|++||+
T Consensus       165 ~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  240 (435)
T 1p22_A          165 CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDM  240 (435)
T ss_dssp             EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEEC
T ss_pred             EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeC
Confidence            34567899999999999  788999999999999999999999999999999999999974  59999999999999999


Q ss_pred             CCCeEE---EEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          178 STYQCL---KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       178 ~~~~~~---~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      .+++..   ..+.+|...|.+++|  +++++++|+.|++|++||++++.++..+.+|...|.++.+  ++.++++|+.||
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg  316 (435)
T 1p22_A          241 ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN  316 (435)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             CCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC
Confidence            876544   677899999999999  6789999999999999999999999999999999999998  478999999999


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe---------
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS---------  325 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~---------  325 (406)
                      .|++||++++..+..+.+|...|.++.|.                    +.++++|+.||.|++||+.++.         
T Consensus       317 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--------------------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~  376 (435)
T 1p22_A          317 TIRLWDIECGACLRVLEGHEELVRCIRFD--------------------NKRIVSGAYDGKIKVWDLVAALDPRAPAGTL  376 (435)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEECC--------------------SSEEEEEETTSCEEEEEHHHHTSTTSCTTTT
T ss_pred             eEEEEECCCCCEEEEEeCCcCcEEEEEec--------------------CCEEEEEeCCCcEEEEECCCCCCccccccch
Confidence            99999999999999999999999999883                    4589999999999999987665         


Q ss_pred             EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEe
Q psy226          326 LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFH  385 (406)
Q Consensus       326 ~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~  385 (406)
                      ++..+.+|...|.+++|  ++.+|++|+.||+|++||+.+......... .....++.|.
T Consensus       377 ~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~  433 (435)
T 1p22_A          377 CLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPP-RSPSRTYTYI  433 (435)
T ss_dssp             EEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             heeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCC-CCCccceeee
Confidence            88899999999999999  688999999999999999987655443322 2344555554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=9.2e-37  Score=287.75  Aligned_cols=231  Identities=10%  Similarity=0.116  Sum_probs=173.3

Q ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCeEEE-----EEecCCcceEEEEEec--------CCCEEEEEeCCCcEEEEEcCCC
Q psy226          156 FDQSGKLLVSCSADMSLKLWDMSTYQCLK-----TMQGHDHNVTGVAFLP--------NSDFVLSASRDKTIKMWEVATG  222 (406)
Q Consensus       156 ~~~~g~~l~sgs~d~~i~vwd~~~~~~~~-----~~~~h~~~v~~~~~~p--------~~~~l~s~s~d~~i~iwd~~~~  222 (406)
                      +.+++.+|++|+.|++|++||..++++..     .+.+|...|.+++|+|        ++++|++||.|++|+|||+.++
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence            34456689999999999999998876532     3578999999999998        7889999999999999999999


Q ss_pred             eEEEEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCCccceeEEe-------------------------cCCce
Q psy226          223 YCVKTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKETKAELR-------------------------GHDHT  276 (406)
Q Consensus       223 ~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~-------------------------~~~~~  276 (406)
                      .++..+.+|...+.+++|+|++ .+|++|+.|++|++||++++.......                         +|...
T Consensus       177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  256 (393)
T 4gq1_A          177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS  256 (393)
T ss_dssp             EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred             ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence            8888888999999999999987 489999999999999998765443322                         23334


Q ss_pred             EEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcC------------
Q psy226          277 VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHP------------  344 (406)
Q Consensus       277 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~------------  344 (406)
                      +.++.|.+                 .++..+++++.|+++++||+..++....+..|...+..+.+.|            
T Consensus       257 v~~v~~~~-----------------~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (393)
T 4gq1_A          257 LANVRWIG-----------------SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL  319 (393)
T ss_dssp             CSEEEEET-----------------TTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS
T ss_pred             ceeeeeec-----------------CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce
Confidence            44444432                 2578899999999999999998887777666655554443333            


Q ss_pred             --------CCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          345 --------GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       345 --------~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                              ++.++++|+.||+|++||+.+++....+..|...|.+|+|+|+|++||+++.|| +.+|.
T Consensus       320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr  386 (393)
T 4gq1_A          320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR  386 (393)
T ss_dssp             CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred             eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence                    344678899999999999999998888888999999999999999999999777 44444

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.3e-35  Score=266.72  Aligned_cols=245  Identities=21%  Similarity=0.385  Sum_probs=212.0

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      .+.+|...|++++|+|++++||+|+.||+|++||+.+++....+.+|...+.++.+  ++..+++|+.++.+++|+..+.
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCC
Confidence            45678899999999999999999999999999999999999999999998887666  5679999999999999998754


Q ss_pred             -eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe----EEEEeecCCccEEEEEECCCCCEE---EEEeC
Q psy226          181 -QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY----CVKTLTGHREWVRQIKVSPDGTLL---ASCSN  252 (406)
Q Consensus       181 -~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l---~s~~~  252 (406)
                       ..+..+.+|...+..+.+.++++++++++.|++|++||++++.    .......+...|..+.++|++..+   ++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  219 (318)
T 4ggc_A          140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS  219 (318)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred             ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence             5567888999999999999999999999999999999998764    334556788889999999976533   46678


Q ss_pred             CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE--EeCCCcEEEEECCCCeEEEEE
Q psy226          253 DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT--GSRDKTIKLWDVGSGSLLFTL  330 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--~~~d~~i~lwd~~~~~~~~~~  330 (406)
                      +++|++||......... ..+...+..+.|.|.                  +..+++  |+.|+.|++||+++++++..+
T Consensus       220 ~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~------------------~~~~~~~sg~~d~~i~iwd~~~~~~~~~l  280 (318)
T 4ggc_A          220 DRHIRIWNVCSGACLSA-VDAHSQVCSILWSPH------------------YKELISGHGFAQNQLVIWKYPTMAKVAEL  280 (318)
T ss_dssp             TCEEEEEETTTCCEEEE-EECSSCEEEEEEETT------------------TTEEEEEECTTTCCEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeccccccccc-ccceeeeeeeeeccc------------------ccceEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            99999999987765544 446677888888874                  344544  448999999999999999999


Q ss_pred             eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q psy226          331 IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK  366 (406)
Q Consensus       331 ~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~  366 (406)
                      .+|.+.|++++|+|+|++|+|||.||+|+|||+...
T Consensus       281 ~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          281 KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            999999999999999999999999999999998654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=289.79  Aligned_cols=256  Identities=7%  Similarity=0.085  Sum_probs=210.0

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      +.||...|++|+|+|+|       .++++.+|+....   ..+. .|.+.|.+++|+|+|.+||+++.||+|++||..+ 
T Consensus        48 l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~---~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-  116 (588)
T 2j04_A           48 INCNSKNLFHVKEFPLE-------FENKLDFELAQQN---GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-  116 (588)
T ss_dssp             CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS---CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-
T ss_pred             ecCCCccEEEEEECCCC-------CcceEEEEeCCCc---eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-
Confidence            47999999999999998       4666666554322   2333 5678999999999999999999999999999654 


Q ss_pred             eEEEEEecCCc-----ceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe-------EEEEe----ecCCccEEEEEECCCC
Q psy226          181 QCLKTMQGHDH-----NVTGVAFLPNSDFVLSASRDKTIKMWEVATGY-------CVKTL----TGHREWVRQIKVSPDG  244 (406)
Q Consensus       181 ~~~~~~~~h~~-----~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~-------~~~~~----~~~~~~v~~l~~~~~~  244 (406)
                       ++..+. |..     .|.+++|+|+|++|++|+.||+|++||+.++.       .+.++    .+|..+|.+++|+|+|
T Consensus       117 -~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg  194 (588)
T 2j04_A          117 -MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV  194 (588)
T ss_dssp             -EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE
T ss_pred             -eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc
Confidence             666666 665     49999999999999999999999999999875       36776    6778899999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCccc---eeEE-ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEE
Q psy226          245 TLLASCSNDHTARVWSLATKET---KAEL-RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWD  320 (406)
Q Consensus       245 ~~l~s~~~d~~v~vwd~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd  320 (406)
                        +++++.|++|++||+.....   ...+ .+|...|.+++|+ +                   .++++++ +++|++||
T Consensus       195 --Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g-------------------~~LASa~-~~tIkLWd  251 (588)
T 2j04_A          195 --LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-D-------------------YKVVLTC-PGYVHKID  251 (588)
T ss_dssp             --EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-T-------------------TEEEEEC-SSEEEEEE
T ss_pred             --EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-C-------------------CEEEEEe-CCeEEEEE
Confidence              88899999999999987663   2456 4788899999996 2                   3688887 69999999


Q ss_pred             CCCCeEEEEEeCCCcCEEEEEE--cCCCCEEEEEeCCCeEEEEeCCC-----------------------Cccceeeccc
Q psy226          321 VGSGSLLFTLIGHDNWVRGVTF--HPGGKYLVSCGDDKTLRVWDTAN-----------------------KRNMKTLEAH  375 (406)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~l~~--s~~g~~l~sgs~d~~i~vwd~~~-----------------------~~~~~~l~~h  375 (406)
                      +.+++......+|.+.|..++|  +|++..|++++.||+ ++|....                       +..+..+++ 
T Consensus       252 ~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-  329 (588)
T 2j04_A          252 LKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-  329 (588)
T ss_dssp             TTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-
T ss_pred             CCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-
Confidence            9988875444489999999999  999999999999999 9998631                       111223333 


Q ss_pred             cceEEEEEEeCCCCEEEEee
Q psy226          376 SHFVTSLDFHRAHPYVVTGS  395 (406)
Q Consensus       376 ~~~v~~l~~~~~~~~l~sgs  395 (406)
                      ...|.+++|+|+|+.+|+++
T Consensus       330 ~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          330 TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             EEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEEEECCCCCEEEEEE
Confidence            44699999999999999886

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.1e-36  Score=286.11  Aligned_cols=247  Identities=21%  Similarity=0.364  Sum_probs=215.8

Q ss_pred             EeccCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCC-------cEEEEecccccCeeeEEECCCC-CEEEEEeCCCc
Q psy226          101 ALSGHRSPVIKVIFHP-VFSLMASCSEDATIRLWDYETG-------EYERALHGHLDSVQDIAFDQSG-KLLVSCSADMS  171 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p-~~~~latgs~dg~v~vwd~~~~-------~~~~~~~~h~~~V~~l~~~~~g-~~l~sgs~d~~  171 (406)
                      .+.+|.++|++++|+| ++.+|++|+.||+|++||+.++       +....+.+|...|.+++|+|++ .+|++|+.|++
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence            4679999999999999 8999999999999999999987       5577888999999999999998 69999999999


Q ss_pred             EEEEeCCCCeEEEEE--ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ecCCcc-EEEEEECCCCCEE
Q psy226          172 LKLWDMSTYQCLKTM--QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL-TGHREW-VRQIKVSPDGTLL  247 (406)
Q Consensus       172 i~vwd~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~~~~~-v~~l~~~~~~~~l  247 (406)
                      |++||+.+++.+..+  .+|...|.+++|+|++++|++++.|+.|++||++++..+..+ .+|... +..+.|+|++.++
T Consensus       156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (402)
T 2aq5_A          156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL  235 (402)
T ss_dssp             EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred             EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence            999999999999999  789999999999999999999999999999999999999988 788776 8999999999999


Q ss_pred             EEE---eCCCeEEEEeCCCccc-eeEEe-cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEE-EEeCCCcEEEEEC
Q psy226          248 ASC---SNDHTARVWSLATKET-KAELR-GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLA-TGSRDKTIKLWDV  321 (406)
Q Consensus       248 ~s~---~~d~~v~vwd~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~lwd~  321 (406)
                      ++|   +.|+.|++||+++... ..... .|...+.++.|+|+                  +.+++ +|+.|+.|++||+
T Consensus       236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~------------------~~~l~~~g~~dg~i~i~d~  297 (402)
T 2aq5_A          236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD------------------TNIVYLCGKGDSSIRYFEI  297 (402)
T ss_dssp             EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT------------------TTEEEEEETTCSCEEEEEE
T ss_pred             EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC------------------CCEEEEEEcCCCeEEEEEe
Confidence            999   7999999999987654 32332 56778899999984                  55665 5667999999999


Q ss_pred             CCCeE-EEEEeC--CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy226          322 GSGSL-LFTLIG--HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR  367 (406)
Q Consensus       322 ~~~~~-~~~~~~--h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~  367 (406)
                      .+++. +..+..  |...|.+++|+|++.++++  .++.+++|++.++.
T Consensus       298 ~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          298 TSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             CSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             cCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            98773 334433  5689999999999998875  56799999987654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.3e-36  Score=286.78  Aligned_cols=259  Identities=14%  Similarity=0.148  Sum_probs=187.3

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEE-----EecccccCeeeEEECC--------CCCEEEEEeCCC
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYER-----ALHGHLDSVQDIAFDQ--------SGKLLVSCSADM  170 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~-----~~~~h~~~V~~l~~~~--------~g~~l~sgs~d~  170 (406)
                      .|...+....+++++.+||+|+.|++|+|||..+++...     .+.+|.+.|++|+|+|        +|++|++||.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            455555556666777899999999999999999886533     3679999999999987        789999999999


Q ss_pred             cEEEEeCCCCeEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEE----------------------
Q psy226          171 SLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKT----------------------  227 (406)
Q Consensus       171 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~----------------------  227 (406)
                      +|+|||+.++.++..+.+|..+|.+++|+|++. +|++|+.|++|++||++++.....                      
T Consensus       167 tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             eEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            999999998888888889999999999999875 799999999999999988754322                      


Q ss_pred             ---eecCCccEEEEEEC-CCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccc--cCCCCCC
Q psy226          228 ---LTGHREWVRQIKVS-PDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEA--AGRPPGQ  301 (406)
Q Consensus       228 ---~~~~~~~v~~l~~~-~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~  301 (406)
                         ..+|...+.++.|+ |+++.+++++.|+++++||+........+..|...+..+.+.|..........  .......
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR  326 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred             eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence               23577788889886 79999999999999999999988888888888888877777765322111000  0001112


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy226          302 GGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       302 ~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~  363 (406)
                      .++.++++|+.|+.|++||+.++.++..+.+|...|++++|+|+|++||++++|| +.+|.+
T Consensus       327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            3456788899999999999999998888889999999999999999999999877 555554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=4.9e-34  Score=268.48  Aligned_cols=264  Identities=17%  Similarity=0.182  Sum_probs=227.1

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEE
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL-VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVA  197 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l-~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  197 (406)
                      .++++++.|++|++||+.+++....+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            468899999999999999999988888764 58999999999977 677799999999999999988887665 899999


Q ss_pred             EecCCCEEEE-EeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEE-EEEeCCCeEEEEeCCCccceeEEecCCc
Q psy226          198 FLPNSDFVLS-ASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLL-ASCSNDHTARVWSLATKETKAELRGHDH  275 (406)
Q Consensus       198 ~~p~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~  275 (406)
                      |+|++++|++ ++.|+.|++||+.++..+..+..+. .+.+++|+|+|+.+ ++++.|+.|++||+.+++....+..+. 
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-  158 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-  158 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-
Confidence            9999998754 5567999999999999888877654 57999999999977 788889999999999888877777664 


Q ss_pred             eEEEEEeCCCCCccccccccCCCCCCCCCCEE-EEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEe-
Q psy226          276 TVECVAWAPGVASESISEAAGRPPGQGGGPYL-ATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCG-  353 (406)
Q Consensus       276 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs-  353 (406)
                      .+.++.|+|+                  +.++ ++++.|+.|++||+++++.+..+. +...+.+++|+|+|++|++++ 
T Consensus       159 ~~~~~~~~~d------------------g~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          159 SPKGIAVTPD------------------GTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             SEEEEEECTT------------------SSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEE
T ss_pred             CcceEEECCC------------------CCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEec
Confidence            4588899883                  5555 677889999999999998887765 456789999999999999888 


Q ss_pred             --CCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEE-EEeeCCCeEEEeecC
Q psy226          354 --DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYV-VTGSVDKTVKVWECR  406 (406)
Q Consensus       354 --~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l-~sgs~Dg~v~iw~~~  406 (406)
                        .++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus       220 ~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          220 DKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             CSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence              68999999999998888887765 47899999999977 678899999999963

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=266.47  Aligned_cols=252  Identities=18%  Similarity=0.277  Sum_probs=213.2

Q ss_pred             EEcCCCcEEEEecccccCeeeEEECCC---CCEEEEEeCCCcEEEEeCCC-CeEE-EEEecCCcceEEEEEecCCCEEEE
Q psy226          133 WDYETGEYERALHGHLDSVQDIAFDQS---GKLLVSCSADMSLKLWDMST-YQCL-KTMQGHDHNVTGVAFLPNSDFVLS  207 (406)
Q Consensus       133 wd~~~~~~~~~~~~h~~~V~~l~~~~~---g~~l~sgs~d~~i~vwd~~~-~~~~-~~~~~h~~~v~~~~~~p~~~~l~s  207 (406)
                      |+....+....+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence            344555667788999999999999999   69999999999999999986 5544 788899999999999999999999


Q ss_pred             EeCCCcEEEEEcCCCeEEEEeecCCccEEEEEE--CCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCC
Q psy226          208 ASRDKTIKMWEVATGYCVKTLTGHREWVRQIKV--SPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPG  285 (406)
Q Consensus       208 ~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  285 (406)
                      ++.|+.|++||+.++..+. +.+|...|.+++|  +|++.+|++++.|+.|++||+++.+....+..+. .+.++.+.+ 
T Consensus       104 ~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~-  180 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY-  180 (368)
T ss_dssp             EETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET-
T ss_pred             EcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC-
Confidence            9999999999999988766 5679999999999  9999999999999999999999998888887765 444555443 


Q ss_pred             CCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe--CCCcCEEEEEEcCCCCE----EEEEeCCCeEE
Q psy226          286 VASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI--GHDNWVRGVTFHPGGKY----LVSCGDDKTLR  359 (406)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~--~h~~~v~~l~~s~~g~~----l~sgs~d~~i~  359 (406)
                                         ..+++++.++.+++||++.........  .+...+.++++.++...    +++|+.||.|+
T Consensus       181 -------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~  241 (368)
T 3mmy_A          181 -------------------PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVA  241 (368)
T ss_dssp             -------------------TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEE
T ss_pred             -------------------CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEE
Confidence                               368899999999999998765544332  23445666666665544    99999999999


Q ss_pred             EEeCCCC---ccceeeccccc------------eEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          360 VWDTANK---RNMKTLEAHSH------------FVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       360 vwd~~~~---~~~~~l~~h~~------------~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +||+...   ..+..+..|..            .|++++|+|++++|++|+.||.|++||++
T Consensus       242 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  303 (368)
T 3mmy_A          242 IHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD  303 (368)
T ss_dssp             EEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             EEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence            9999877   55677777776            69999999999999999999999999974

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=8.5e-35  Score=270.52  Aligned_cols=245  Identities=13%  Similarity=0.174  Sum_probs=190.3

Q ss_pred             EEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEE-EEEeC
Q psy226          132 LWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFV-LSASR  210 (406)
Q Consensus       132 vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~  210 (406)
                      +|++.+.+......+|...|++++|+|+|++|++|+.|+ +++||+.+++.......  ..+..+++.++++.+ ++++.
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   79 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV   79 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence            456666666666788999999999999999999998775 78999988776554432  357788899988877 56888


Q ss_pred             CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCcc
Q psy226          211 DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASE  289 (406)
Q Consensus       211 d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~  289 (406)
                      |++|++||..++.++..+. +...|.+++++++.  ++++ .|+.|++||+.+. +.+..+..   +...++++|     
T Consensus        80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-----  147 (355)
T 3vu4_A           80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-----  147 (355)
T ss_dssp             TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-----
T ss_pred             ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc-----
Confidence            8999999999999988886 66789999999875  3333 4889999999887 55554443   333344443     


Q ss_pred             ccccccCCCCCCCCCCEEEE--EeCCCcEEEEECCCCe----------------EEEEEeCCCcCEEEEEEcCCCCEEEE
Q psy226          290 SISEAAGRPPGQGGGPYLAT--GSRDKTIKLWDVGSGS----------------LLFTLIGHDNWVRGVTFHPGGKYLVS  351 (406)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~s--~~~d~~i~lwd~~~~~----------------~~~~~~~h~~~v~~l~~s~~g~~l~s  351 (406)
                                     .+++.  |+.||.|++||+.++.                ++..+.+|...|++++|+|+|++|++
T Consensus       148 ---------------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s  212 (355)
T 3vu4_A          148 ---------------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT  212 (355)
T ss_dssp             ---------------TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ---------------cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE
Confidence                           24555  6899999999998865                26788999999999999999999999


Q ss_pred             EeCCCe-EEEEeCCCCccceeec-c-ccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          352 CGDDKT-LRVWDTANKRNMKTLE-A-HSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       352 gs~d~~-i~vwd~~~~~~~~~l~-~-h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      |+.|++ |++||+.+++.+.++. + |...|++++|+|++++|++|+.||+|++||++
T Consensus       213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          213 CSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             EETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             EeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            999998 9999999999999997 5 99999999999999999999999999999973

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=6.9e-35  Score=261.68  Aligned_cols=286  Identities=12%  Similarity=0.085  Sum_probs=199.5

Q ss_pred             eEEEEEcCCCC---EEEEEeCCCcEEEEEcCCC---cEEEEecccccCeeeEEECCCCC-EEEEEeCCCcEE-EEeC--C
Q psy226          109 VIKVIFHPVFS---LMASCSEDATIRLWDYETG---EYERALHGHLDSVQDIAFDQSGK-LLVSCSADMSLK-LWDM--S  178 (406)
Q Consensus       109 V~~v~~~p~~~---~latgs~dg~v~vwd~~~~---~~~~~~~~h~~~V~~l~~~~~g~-~l~sgs~d~~i~-vwd~--~  178 (406)
                      +.++-|-..+-   .++++++ .+|++|+..++   +...+.++|..+|..+.+.||.. ++.++-..-.+. ++-+  .
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            44555544332   5666665 68999999998   78889999999999999988643 222222221111 1111  1


Q ss_pred             CC----eEEEEEecCCcceEEEEEecCCCEEEEEe--CCCcEEEEEc-CCCeEEEEeecCCccEEEEEECC---CCCEEE
Q psy226          179 TY----QCLKTMQGHDHNVTGVAFLPNSDFVLSAS--RDKTIKMWEV-ATGYCVKTLTGHREWVRQIKVSP---DGTLLA  248 (406)
Q Consensus       179 ~~----~~~~~~~~h~~~v~~~~~~p~~~~l~s~s--~d~~i~iwd~-~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~  248 (406)
                      ..    .....-.+|...|.++   ++++++.+++  .|+.|++|++ .+|+.+..+.+|+..++.++|+|   ++.+|+
T Consensus       121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~La  197 (356)
T 2w18_A          121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALL  197 (356)
T ss_dssp             -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEE
T ss_pred             CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEE
Confidence            10    1111113444445443   5655555533  5999999999 55888889999999999999999   779999


Q ss_pred             EEeCCCeEEEEeCCCccceeEEecCC---ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe
Q psy226          249 SCSNDHTARVWSLATKETKAELRGHD---HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS  325 (406)
Q Consensus       249 s~~~d~~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~  325 (406)
                      +|+.|++|+|||+.+++.+..+.+|.   ..+.+++|+|+.......   ..+   .....+++|+.|++|++||..+++
T Consensus       198 SgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~---s~~---~~~w~laSGs~D~tIklWd~~tgk  271 (356)
T 2w18_A          198 GTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVL---SHP---CAKESESLRSPVFQLIVINPKTTL  271 (356)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEE---C---------------CCEEEEEEETTTTE
T ss_pred             EecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEe---ccC---CCcceeeccCCCcEEEEEECCCCE
Confidence            99999999999999999999998654   356777898852111000   000   011246889999999999999999


Q ss_pred             EEEEE-----eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEE-EEEEeCCCCEEEEeeCCCe
Q psy226          326 LLFTL-----IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVT-SLDFHRAHPYVVTGSVDKT  399 (406)
Q Consensus       326 ~~~~~-----~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~-~l~~~~~~~~l~sgs~Dg~  399 (406)
                      .+..+     .+|...+.+..++  +.++++|+.|++|+|||+.++++++++.+|...+. +++|+|++++|+||+.|++
T Consensus       272 ~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          272 SVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             EEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             EEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            87765     3776665544444  88999999999999999999999999999877654 6899999999999999999


Q ss_pred             EEEeecC
Q psy226          400 VKVWECR  406 (406)
Q Consensus       400 v~iw~~~  406 (406)
                      |+|||+.
T Consensus       350 IklWd~~  356 (356)
T 2w18_A          350 IFVYHYS  356 (356)
T ss_dssp             EEEEEEC
T ss_pred             EEEecCC
Confidence            9999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-34  Score=276.75  Aligned_cols=240  Identities=15%  Similarity=0.237  Sum_probs=208.7

Q ss_pred             cCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe---EEEEEecC------------------------------------
Q psy226          149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ---CLKTMQGH------------------------------------  189 (406)
Q Consensus       149 ~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~---~~~~~~~h------------------------------------  189 (406)
                      .++.+++|+++|++|+++ .++.|++||+.+++   .+..+..+                                    
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            578999999999966655 57899999998888   65555433                                    


Q ss_pred             ------------------CcceEEEEEecCCCEE-EEEeCCCcEEEEEcC--CCeEEEEee--cCCccEEEEEECCCCCE
Q psy226          190 ------------------DHNVTGVAFLPNSDFV-LSASRDKTIKMWEVA--TGYCVKTLT--GHREWVRQIKVSPDGTL  246 (406)
Q Consensus       190 ------------------~~~v~~~~~~p~~~~l-~s~s~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~l~~~~~~~~  246 (406)
                                        ...|.+++|+|++++| ++|+.|++|++||+.  ++.++..+.  .|...|.+++|+|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                              3369999999999996 889999999999999  888888876  56789999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCcccee----EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC
Q psy226          247 LASCSNDHTARVWSLATKETKA----ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG  322 (406)
Q Consensus       247 l~s~~~d~~v~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~  322 (406)
                      |++|+.|+.+++|++.+.....    .+.+|...|.+++|+|+.               ..+.+|++|+.|+.|++||++
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~---------------~~~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDS---------------DGHQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECT---------------TSCEEEEEEETTSCEEEEEES
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCC---------------CCCcEEEEEcCCCcEEEEECC
Confidence            9999999999999998776544    678899999999999831               026789999999999999999


Q ss_pred             CCeEEEE-EeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc-------------------------c
Q psy226          323 SGSLLFT-LIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH-------------------------S  376 (406)
Q Consensus       323 ~~~~~~~-~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h-------------------------~  376 (406)
                      ++.++.. +.+|...|.+++|+ ++++|++|+.|++|++||+.+++.+..+..+                         .
T Consensus       229 ~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          229 QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence            9988877 55899999999999 9999999999999999999999888777532                         3


Q ss_pred             ceEEEEEEeCCCCEEEEee-CCCeEEEeec
Q psy226          377 HFVTSLDFHRAHPYVVTGS-VDKTVKVWEC  405 (406)
Q Consensus       377 ~~v~~l~~~~~~~~l~sgs-~Dg~v~iw~~  405 (406)
                      ..|.+++|+|++++|++++ .|+.|++|++
T Consensus       308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          308 FAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            4689999999999999998 8999999997

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.1e-34  Score=264.08  Aligned_cols=260  Identities=19%  Similarity=0.270  Sum_probs=196.0

Q ss_pred             eEEeccCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCC---------cEEEEecccccCeeeEEECCC--CCEEEE
Q psy226           99 KFALSGHRSPVIKVIFHP--VFSLMASCSEDATIRLWDYETG---------EYERALHGHLDSVQDIAFDQS--GKLLVS  165 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p--~~~~latgs~dg~v~vwd~~~~---------~~~~~~~~h~~~V~~l~~~~~--g~~l~s  165 (406)
                      ...+.+|..+|++++|+|  ++.+|++|+.||+|++||+.++         +....+.+|...|.+++|+|+  +.+|++
T Consensus        50 ~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  129 (351)
T 3f3f_A           50 SDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC  129 (351)
T ss_dssp             EEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             cceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEE
Confidence            345679999999999999  5999999999999999999887         557778899999999999999  999999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEEe-------------cCCcceEEEEEecC---CCEEEEEeCCCcEEEEEcCCCeE--EEE
Q psy226          166 CSADMSLKLWDMSTYQCLKTMQ-------------GHDHNVTGVAFLPN---SDFVLSASRDKTIKMWEVATGYC--VKT  227 (406)
Q Consensus       166 gs~d~~i~vwd~~~~~~~~~~~-------------~h~~~v~~~~~~p~---~~~l~s~s~d~~i~iwd~~~~~~--~~~  227 (406)
                      |+.|+.|++||+.+++.+..+.             +|...+.+++|+|+   +.++++++.|+.+.+|+...+..  +..
T Consensus       130 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  209 (351)
T 3f3f_A          130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK  209 (351)
T ss_dssp             EETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE
T ss_pred             ecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee
Confidence            9999999999998765432221             57788999999997   89999999999998888877764  677


Q ss_pred             eecCCccEEEEEECCCC----CEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCC
Q psy226          228 LTGHREWVRQIKVSPDG----TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGG  303 (406)
Q Consensus       228 ~~~~~~~v~~l~~~~~~----~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (406)
                      +.+|...|.+++|+|++    ++|++|+.||.|++||++..........+..........+...              ..
T Consensus       210 ~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~  275 (351)
T 3f3f_A          210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVD--------------MD  275 (351)
T ss_dssp             CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------
T ss_pred             cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccc--------------cc
Confidence            88999999999999998    8999999999999999986544333222222222221111100              00


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee
Q psy226          304 GPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL  372 (406)
Q Consensus       304 ~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l  372 (406)
                      ......+.....+.+|+....+.+..+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          276 AQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ---------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             cccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            111223344556778887778889999999999999999999999999999999999999987655444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-34  Score=266.89  Aligned_cols=226  Identities=11%  Similarity=0.086  Sum_probs=190.5

Q ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC---------CCeEEE
Q psy226          156 FDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA---------TGYCVK  226 (406)
Q Consensus       156 ~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~---------~~~~~~  226 (406)
                      +.+++.+|++|+.||+|++||+.+++.+..+.  ...|.++.|+|+   +++++.|++|++|+..         ++..+.
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            34578899999999999999999998887776  467888889988   9999999999999665         455444


Q ss_pred             Eee-cCCccEEEEEECC--CCCEEEEEeCCCeEEEEeCCCccceeEEe-cCCceEEEEEeCCCCCccccccccCCCCCCC
Q psy226          227 TLT-GHREWVRQIKVSP--DGTLLASCSNDHTARVWSLATKETKAELR-GHDHTVECVAWAPGVASESISEAAGRPPGQG  302 (406)
Q Consensus       227 ~~~-~~~~~v~~l~~~~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  302 (406)
                      .+. +|...|.+++|+|  +++++++|+.||+|++||+++++...... .|...+.+++|+|                  
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p------------------  180 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK------------------  180 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT------------------
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC------------------
Confidence            444 6778999999999  99999999999999999999888766553 4555799999998                  


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEE-EEEeC-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc---ccc
Q psy226          303 GGPYLATGSRDKTIKLWDVGSGSLL-FTLIG-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA---HSH  377 (406)
Q Consensus       303 ~~~~l~s~~~d~~i~lwd~~~~~~~-~~~~~-h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~---h~~  377 (406)
                      ++.++++|+.|+.|++||+++++.+ ..+.+ |...|++++|+|+|.+|++++++ .|++||+++++.+.++..   |..
T Consensus       181 dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~  259 (343)
T 3lrv_A          181 DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEF  259 (343)
T ss_dssp             TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC---
T ss_pred             CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccc
Confidence            4779999999999999999999887 78888 99999999999999999999954 999999998877666543   434


Q ss_pred             eEE--EEEEeCCCCEEEEeeC-CCeEEEeec
Q psy226          378 FVT--SLDFHRAHPYVVTGSV-DKTVKVWEC  405 (406)
Q Consensus       378 ~v~--~l~~~~~~~~l~sgs~-Dg~v~iw~~  405 (406)
                      .+.  +++|+|++++|++|+. |+.|++|++
T Consensus       260 ~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          260 KTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             --CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            444  6999999999999998 999999986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=6.2e-32  Score=254.10  Aligned_cols=281  Identities=18%  Similarity=0.208  Sum_probs=229.6

Q ss_pred             EeccCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEE-EeCCCcEEEEeCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLM-ASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVS-CSADMSLKLWDMS  178 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~l-atgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~s-gs~d~~i~vwd~~  178 (406)
                      .+.+|. .+.+++|+|+++.+ ++++.|++|++||..+++....+..+. .+.+++|+|+|++|+. ++.|+.|++||+.
T Consensus        27 ~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           27 TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECC
Confidence            455554 58999999999976 678899999999999999888887655 8999999999998754 5567999999999


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEE-EEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEE-EEEeCCCeE
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFV-LSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLL-ASCSNDHTA  256 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~d~~v  256 (406)
                      +++.+..+..+ ..+.+++|+|+++.+ ++++.|+.|++||+.++..+..+..+. .+..++|+|+++.+ ++++.|+.|
T Consensus       105 ~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v  182 (391)
T 1l0q_A          105 SNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSI  182 (391)
T ss_dssp             TTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEE
T ss_pred             CCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEE
Confidence            99988877755 468999999999977 688889999999999999888887664 46899999999887 677889999


Q ss_pred             EEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe---CCCcEEEEECCCCeEEEEEeCC
Q psy226          257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS---RDKTIKLWDVGSGSLLFTLIGH  333 (406)
Q Consensus       257 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~lwd~~~~~~~~~~~~h  333 (406)
                      ++||+.+......+. +...+.+++|+|                  ++.++++++   .++.|++||+.+++.+..+..|
T Consensus       183 ~~~d~~~~~~~~~~~-~~~~~~~~~~~~------------------~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  243 (391)
T 1l0q_A          183 SVIDTVTNSVIDTVK-VEAAPSGIAVNP------------------EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG  243 (391)
T ss_dssp             EEEETTTTEEEEEEE-CSSEEEEEEECT------------------TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC
T ss_pred             EEEECCCCeEEEEEe-cCCCccceEECC------------------CCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC
Confidence            999999887666655 456788899988                  366777777   6899999999999998888876


Q ss_pred             CcCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCccceeeccccceEE---EEE------------EeCCC---------
Q psy226          334 DNWVRGVTFHPGGKYL-VSCGDDKTLRVWDTANKRNMKTLEAHSHFVT---SLD------------FHRAH---------  388 (406)
Q Consensus       334 ~~~v~~l~~s~~g~~l-~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~---~l~------------~~~~~---------  388 (406)
                      . .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+..   .+.            |+.+.         
T Consensus       244 ~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~  322 (391)
T 1l0q_A          244 P-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSE  322 (391)
T ss_dssp             S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTC
T ss_pred             C-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccc
Confidence            5 47899999999987 6778899999999999988888876654421   022            22211         


Q ss_pred             -CEEEEeeCCCeEEEeec
Q psy226          389 -PYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       389 -~~l~sgs~Dg~v~iw~~  405 (406)
                       -.+.+.+.|..+++|+.
T Consensus       323 ~~~~~~~~~~~~~~~W~~  340 (391)
T 1l0q_A          323 PVQFTDLSKDATEWKWDF  340 (391)
T ss_dssp             CEEEEECCBSCSEEEEEC
T ss_pred             eEEEEeCCCCceEEEEEC
Confidence             24666778899999986

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.5e-33  Score=251.59  Aligned_cols=235  Identities=16%  Similarity=0.130  Sum_probs=172.3

Q ss_pred             ceEEeccCCCCeEEEEEcCCCC-EEEEE---------------eCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCC
Q psy226           98 EKFALSGHRSPVIKVIFHPVFS-LMASC---------------SEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK  161 (406)
Q Consensus        98 ~~~~l~~h~~~V~~v~~~p~~~-~latg---------------s~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~  161 (406)
                      ..+++.+|..||..|++.|+.. ++..+               ..|+.+.-|.+        -.+|...|.++   ++|+
T Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~--------s~g~~~~v~~l---~~g~  146 (356)
T 2w18_A           78 KLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLL--------KSGNIKAVLGL---TKRR  146 (356)
T ss_dssp             EEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEE--------EEEEEEEEEEE---TTTE
T ss_pred             eeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEE--------eCCCeEEEEec---CCCc
Confidence            4567888888888888888532 22222               22222221111        12344444443   4555


Q ss_pred             EEEEEe--CCCcEEEEeCC-CCeEEEEEecCCcceEEEEEec---CCCEEEEEeCCCcEEEEEcCCCeEEEEeecCC---
Q psy226          162 LLVSCS--ADMSLKLWDMS-TYQCLKTMQGHDHNVTGVAFLP---NSDFVLSASRDKTIKMWEVATGYCVKTLTGHR---  232 (406)
Q Consensus       162 ~l~sgs--~d~~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~p---~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~---  232 (406)
                      ++.+++  .|+.|++|++. +++.+..+.+|...+..++|+|   ++.+|++|+.|++|+|||+.+|++++++.+|.   
T Consensus       147 lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v  226 (356)
T 2w18_A          147 LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ  226 (356)
T ss_dssp             EEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---
T ss_pred             EEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce
Confidence            555543  59999999994 5888888999999999999999   77899999999999999999999999998754   


Q ss_pred             ccEEEEEECCCCCEE------------EEEeCCCeEEEEeCCCccceeEE-----ecCCceEEEEEeCCCCCcccccccc
Q psy226          233 EWVRQIKVSPDGTLL------------ASCSNDHTARVWSLATKETKAEL-----RGHDHTVECVAWAPGVASESISEAA  295 (406)
Q Consensus       233 ~~v~~l~~~~~~~~l------------~s~~~d~~v~vwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~  295 (406)
                      ..+.+++|+|+|.++            ++|+.|++|++||..++..+..+     .+|...+.+..+             
T Consensus       227 ~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~-------------  293 (356)
T 2w18_A          227 ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV-------------  293 (356)
T ss_dssp             CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE-------------
T ss_pred             eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc-------------
Confidence            357778999999876            66889999999999888765443     133332222111             


Q ss_pred             CCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEE-EEEEcCCCCEEEEEeCCCeEEEEeC
Q psy226          296 GRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVR-GVTFHPGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       296 ~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~-~l~~s~~g~~l~sgs~d~~i~vwd~  363 (406)
                             .+.++++|+.|++|+|||+.+++++.++.+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus       294 -------sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          294 -------KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -------ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             -------CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence                   245799999999999999999999999999987655 6899999999999999999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=9.8e-31  Score=249.27  Aligned_cols=279  Identities=12%  Similarity=0.116  Sum_probs=225.6

Q ss_pred             CCCCeEEEE---EcCCCCEEEEE--------------eCCC--cEEEEEcCCC--cEEEEecccccCeeeEEECCCCCEE
Q psy226          105 HRSPVIKVI---FHPVFSLMASC--------------SEDA--TIRLWDYETG--EYERALHGHLDSVQDIAFDQSGKLL  163 (406)
Q Consensus       105 h~~~V~~v~---~~p~~~~latg--------------s~dg--~v~vwd~~~~--~~~~~~~~h~~~V~~l~~~~~g~~l  163 (406)
                      ....+..++   |+|++..++..              +.++  .|..||..++  +....+..+ ..+.+++|+|++.++
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~  137 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA  137 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence            445567777   78877665543              3334  4444555445  344445444 456699999977788


Q ss_pred             EEEeCCCcEEEEeCCCCeEEE-----EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEE
Q psy226          164 VSCSADMSLKLWDMSTYQCLK-----TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQI  238 (406)
Q Consensus       164 ~sgs~d~~i~vwd~~~~~~~~-----~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l  238 (406)
                      ++++.|+.|++||+.+++...     .+.+|...|.+++|+|++.++++++.|+.|++||+.++..+..+..|...+.++
T Consensus       138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~  217 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL  217 (433)
T ss_dssp             EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred             EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence            888889999999999988876     345788899999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCEEE-EEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe------
Q psy226          239 KVSPDGTLLA-SCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS------  311 (406)
Q Consensus       239 ~~~~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~------  311 (406)
                      +|+|+++.++ +++.|+.|++||+.+++....+..+ ..+.+++|+|                  ++.++++++      
T Consensus       218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~------------------~g~~l~~~~~~~~~~  278 (433)
T 3bws_A          218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSK------------------DGKELYIAQFSASNQ  278 (433)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECT------------------TSSEEEEEEEESCTT
T ss_pred             EEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcC------------------CCCEEEEEECCCCcc
Confidence            9999999885 5558999999999988777666554 4588999988                  366787777      


Q ss_pred             --CCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCC
Q psy226          312 --RDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYL-VSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAH  388 (406)
Q Consensus       312 --~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l-~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~  388 (406)
                        .|+.|++||+.+++.+..+ .|...+.+++|+|+++++ ++++.|+.|++||+.+++.+..+. +...+.+++|+|++
T Consensus       279 ~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg  356 (433)
T 3bws_A          279 ESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG  356 (433)
T ss_dssp             CSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS
T ss_pred             ccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC
Confidence              5889999999998877655 456689999999999755 667899999999999888887776 56679999999999


Q ss_pred             CEEEEeeC---------------CCeEEEeec
Q psy226          389 PYVVTGSV---------------DKTVKVWEC  405 (406)
Q Consensus       389 ~~l~sgs~---------------Dg~v~iw~~  405 (406)
                      ++|++++.               ||.|++||.
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~  388 (433)
T 3bws_A          357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT  388 (433)
T ss_dssp             SEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred             CEEEEEecCCCccccccccccccceEEEEEEC
Confidence            99888776               579999996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.98  E-value=1.2e-30  Score=247.66  Aligned_cols=276  Identities=13%  Similarity=0.126  Sum_probs=223.2

Q ss_pred             CCCeEEEEEcCCCC-EEEEEe----CCC----cEEEEEc--CCCcEE--EEecccccCeeeEEECC--------------
Q psy226          106 RSPVIKVIFHPVFS-LMASCS----EDA----TIRLWDY--ETGEYE--RALHGHLDSVQDIAFDQ--------------  158 (406)
Q Consensus       106 ~~~V~~v~~~p~~~-~latgs----~dg----~v~vwd~--~~~~~~--~~~~~h~~~V~~l~~~~--------------  158 (406)
                      ..+|...+|.+.+. ++++|+    .||    +|++||+  .+++.+  ..+.+|...+..+++++              
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            34677778888875 666876    567    8999999  888866  55888988888877764              


Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCC---cEEEEEcCCCeEEEEee
Q psy226          159 SGKLLVSCSAD------MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK---TIKMWEVATGYCVKTLT  229 (406)
Q Consensus       159 ~g~~l~sgs~d------~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~  229 (406)
                      .+..++.++.+      +.|++||+.. .....+.+|...+.+++|+|+|+.|++++.|+   .|++||+.++... .+.
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~  219 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA  219 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence            25667666654      7999999975 44677888999999999999999999999885   9999999998775 567


Q ss_pred             cCCccEEEEEECCCCCEEE-EEeCCCe--EEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCE
Q psy226          230 GHREWVRQIKVSPDGTLLA-SCSNDHT--ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPY  306 (406)
Q Consensus       230 ~~~~~v~~l~~~~~~~~l~-s~~~d~~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (406)
                      .|...+.+++|+|||+.|+ +++.|+.  |++||+.+++. ..+..|...+.++.|+|                  +|.+
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp------------------dg~~  280 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFP------------------DSQN  280 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECT------------------TSSE
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECC------------------CCCE
Confidence            7888999999999999887 6666655  99999987664 56777888899999998                  4677


Q ss_pred             EEEEeC-CC--cEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCccceeeccccceEE
Q psy226          307 LATGSR-DK--TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDD---KTLRVWDTANKRNMKTLEAHSHFVT  380 (406)
Q Consensus       307 l~s~~~-d~--~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d---~~i~vwd~~~~~~~~~l~~h~~~v~  380 (406)
                      |++++. ++  .|.+||+.+++. ..+..|...+.+++|+|+|++|++++.+   ..|++||+.+++. ..+..+. .+.
T Consensus       281 l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~  357 (415)
T 2hqs_A          281 LAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDE  357 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCE
T ss_pred             EEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcC
Confidence            887776 44  688889988764 4555677789999999999999988764   6899999998776 4555554 789


Q ss_pred             EEEEeCCCCEEEEeeCCC---eEEEeec
Q psy226          381 SLDFHRAHPYVVTGSVDK---TVKVWEC  405 (406)
Q Consensus       381 ~l~~~~~~~~l~sgs~Dg---~v~iw~~  405 (406)
                      +++|+|++++|++++.|+   .|.+||+
T Consensus       358 ~~~~spdg~~l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          358 TPSLAPNGTMVIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             EEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             CeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence            999999999999988887   7999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.98  E-value=2.2e-29  Score=246.29  Aligned_cols=278  Identities=12%  Similarity=0.094  Sum_probs=225.8

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEc--CCCcEEEEecccccCeeeEEECC----CCCEEEEEeC-CCcEEEEeCCCCe
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDY--ETGEYERALHGHLDSVQDIAFDQ----SGKLLVSCSA-DMSLKLWDMSTYQ  181 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~--~~~~~~~~~~~h~~~V~~l~~~~----~g~~l~sgs~-d~~i~vwd~~~~~  181 (406)
                      +..++|+|++++|++++.|++|++||+  .+++....+. +...+..++|+|    +|++|++++. +++|.+||..+++
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            889999999999999999999999999  8888888877 445679999999    9999999884 8999999999999


Q ss_pred             EEEEEecC-----------CcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEE--EeecCCccEEEEEECCCCCEE
Q psy226          182 CLKTMQGH-----------DHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVK--TLTGHREWVRQIKVSPDGTLL  247 (406)
Q Consensus       182 ~~~~~~~h-----------~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l  247 (406)
                      +++.+..+           ...+.++.++|++. ++++...+++|.+||..++..+.  .+ .+...+..+.|+|+|+++
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l  338 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYF  338 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEE
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEE
Confidence            98887652           23688999999776 45667788999999998765433  33 356778899999999987


Q ss_pred             EEEe-CCCeEEEEeCCCccceeEEec----CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe-CCCcEEEEEC
Q psy226          248 ASCS-NDHTARVWSLATKETKAELRG----HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS-RDKTIKLWDV  321 (406)
Q Consensus       248 ~s~~-~d~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~lwd~  321 (406)
                      ++++ .+++|.+||+.+++....+..    |......+ +.|+                 .+.++++++ .|++|.+||+
T Consensus       339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~-----------------~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK-----------------YGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT-----------------TEEEEEEEBSSSSEEEEEEC
T ss_pred             EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC-----------------CccEEEeccCCCceEEEEEe
Confidence            6554 689999999999887776653    33222222 2331                 356677776 6899999999


Q ss_pred             CC-------CeEEEEEeCCCcCEEEEEEcCCCCEEEEEe-------CCCeEEEEeCCCCccc-eee--------ccccce
Q psy226          322 GS-------GSLLFTLIGHDNWVRGVTFHPGGKYLVSCG-------DDKTLRVWDTANKRNM-KTL--------EAHSHF  378 (406)
Q Consensus       322 ~~-------~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs-------~d~~i~vwd~~~~~~~-~~l--------~~h~~~  378 (406)
                      .+       .+++.++.+|...+..++|+|+|++|++++       .+++|.|||+.+++.. ..+        ..+...
T Consensus       401 ~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~  480 (543)
T 1nir_A          401 DPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR  480 (543)
T ss_dssp             CTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCE
T ss_pred             CCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCc
Confidence            88       899999999998889999999999999987       2779999999998876 443        345678


Q ss_pred             EEEEEEeCCCCEEEEee-----CCCeEEEeecC
Q psy226          379 VTSLDFHRAHPYVVTGS-----VDKTVKVWECR  406 (406)
Q Consensus       379 v~~l~~~~~~~~l~sgs-----~Dg~v~iw~~~  406 (406)
                      +..++|+|+|+.|+++.     .|+.|.|||.+
T Consensus       481 ~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~  513 (543)
T 1nir_A          481 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  513 (543)
T ss_dssp             EEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             eEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence            99999999999988653     47999999953

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=1.8e-29  Score=246.84  Aligned_cols=272  Identities=11%  Similarity=0.146  Sum_probs=223.8

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeC--CCCeEEEEEecCC
Q psy226          113 IFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM--STYQCLKTMQGHD  190 (406)
Q Consensus       113 ~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~--~~~~~~~~~~~h~  190 (406)
                      +|+|++.++++++.|++|.+||..+++...++..+.. +.+++|+|+|++|++++.|++|++||+  .+++++.++.. .
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence            4899999999999999999999999999988873333 889999999999999999999999999  88888888874 4


Q ss_pred             cceEEEEEec----CCCEEEEEe-CCCcEEEEEcCCCeEEEEeecC----------Cc-cEEEEEECCCCC-EEEEEeCC
Q psy226          191 HNVTGVAFLP----NSDFVLSAS-RDKTIKMWEVATGYCVKTLTGH----------RE-WVRQIKVSPDGT-LLASCSND  253 (406)
Q Consensus       191 ~~v~~~~~~p----~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~----------~~-~v~~l~~~~~~~-~l~s~~~d  253 (406)
                      ..+..++|+|    +|+++++++ .+++|.+||..++++++.+..+          .. .+..+.++|++. ++++...+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            5679999999    999999887 4899999999999998887652          23 688999999765 45677789


Q ss_pred             CeEEEEeCCCcccee--EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEE-eCCCcEEEEECCCCeEEEEE
Q psy226          254 HTARVWSLATKETKA--ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATG-SRDKTIKLWDVGSGSLLFTL  330 (406)
Q Consensus       254 ~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~lwd~~~~~~~~~~  330 (406)
                      +.|.+||+.+.....  .+ .+...+..+.|+|                  ++.+++++ ..+++|.+||+.+++++..+
T Consensus       302 g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~sp------------------dg~~l~va~~~~~~v~v~D~~tg~l~~~i  362 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDS------------------SHRYFMTAANNSNKVAVIDSKDRRLSALV  362 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEE-ECCSSCCCEEECT------------------TSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             CeEEEEEecCCCcceeEEe-ccCcCccCceECC------------------CCCEEEEEecCCCeEEEEECCCCeEEEee
Confidence            999999998765433  22 3445566777877                  46666554 56899999999999998887


Q ss_pred             eC----CCcCEEEEEEcCC-CCEEEEEe-CCCeEEEEeCCC-------CccceeeccccceEEEEEEeCCCCEEEEee--
Q psy226          331 IG----HDNWVRGVTFHPG-GKYLVSCG-DDKTLRVWDTAN-------KRNMKTLEAHSHFVTSLDFHRAHPYVVTGS--  395 (406)
Q Consensus       331 ~~----h~~~v~~l~~s~~-g~~l~sgs-~d~~i~vwd~~~-------~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs--  395 (406)
                      ..    |......+ ++|+ |..+++++ .|++|.|||+.+       .++++++..|...+..++|||++++|++++  
T Consensus       363 ~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~  441 (543)
T 1nir_A          363 DVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTF  441 (543)
T ss_dssp             ECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTT
T ss_pred             ccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCC
Confidence            64    65444444 4777 66677775 689999999988       788999999988888999999999999987  


Q ss_pred             -----CCCeEEEeecC
Q psy226          396 -----VDKTVKVWECR  406 (406)
Q Consensus       396 -----~Dg~v~iw~~~  406 (406)
                           .+++|.+||..
T Consensus       442 ~~~~~~~~~v~v~d~~  457 (543)
T 1nir_A          442 NPDARISQSVAVFDLK  457 (543)
T ss_dssp             CSSHHHHTCEEEEETT
T ss_pred             CCCcccCceEEEEECC
Confidence                 37899999963

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=2.1e-29  Score=238.94  Aligned_cols=264  Identities=14%  Similarity=0.130  Sum_probs=215.3

Q ss_pred             EeccCCCCeEEEEEcC--------------CCCEEEEEeCC------CcEEEEEcCCCcEEEEecccccCeeeEEECCCC
Q psy226          101 ALSGHRSPVIKVIFHP--------------VFSLMASCSED------ATIRLWDYETGEYERALHGHLDSVQDIAFDQSG  160 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p--------------~~~~latgs~d------g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g  160 (406)
                      .+.+|...+..+++++              .+..++.++.+      ++|++||..++ ....+.+|...|.+++|+|+|
T Consensus       112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg  190 (415)
T 2hqs_A          112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDG  190 (415)
T ss_dssp             EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTS
T ss_pred             EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCC
Confidence            4677877777777765              25666666654      79999999754 456777899999999999999


Q ss_pred             CEEEEEeCCC---cEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEE-EEeCCCc--EEEEEcCCCeEEEEeecCCcc
Q psy226          161 KLLVSCSADM---SLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVL-SASRDKT--IKMWEVATGYCVKTLTGHREW  234 (406)
Q Consensus       161 ~~l~sgs~d~---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~--i~iwd~~~~~~~~~~~~~~~~  234 (406)
                      ++|++++.|+   .|++||+.++++. .+..|...+.+++|+|+|+.|+ +++.|+.  |++||+.++.. ..+..|...
T Consensus       191 ~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~  268 (415)
T 2hqs_A          191 SKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSN  268 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSC
T ss_pred             CEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCc
Confidence            9999999885   9999999988765 5677888999999999999877 6666665  99999998875 567788889


Q ss_pred             EEEEEECCCCCEEEEEeC-CC--eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe
Q psy226          235 VRQIKVSPDGTLLASCSN-DH--TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS  311 (406)
Q Consensus       235 v~~l~~~~~~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  311 (406)
                      +.+++|+|+|+.|++++. ++  .|.+||+.++.. ..+..+...+.+++|+|                  +|.+|++++
T Consensus       269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~sp------------------dG~~l~~~~  329 (415)
T 2hqs_A          269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSS------------------DGKFMVMVS  329 (415)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECT------------------TSSEEEEEE
T ss_pred             ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECC------------------CCCEEEEEE
Confidence            999999999999988886 44  677789877653 44556777888999998                  477788877


Q ss_pred             CC---CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCccceeeccccceEEEEEEe
Q psy226          312 RD---KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK---TLRVWDTANKRNMKTLEAHSHFVTSLDFH  385 (406)
Q Consensus       312 ~d---~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~---~i~vwd~~~~~~~~~l~~h~~~v~~l~~~  385 (406)
                      .+   ..|++||+.+++.. .+..|. .+.+++|+|+|++|++++.++   .|++||+. +.....+..|.+.|.+++|+
T Consensus       330 ~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~  406 (415)
T 2hqs_A          330 SNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWS  406 (415)
T ss_dssp             ECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEEC
T ss_pred             CcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccc
Confidence            64   58999999988774 555554 899999999999999888777   89999986 55677888899999999999


Q ss_pred             CCCC
Q psy226          386 RAHP  389 (406)
Q Consensus       386 ~~~~  389 (406)
                      |...
T Consensus       407 ~~~~  410 (415)
T 2hqs_A          407 PYLH  410 (415)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=4.8e-29  Score=253.84  Aligned_cols=278  Identities=13%  Similarity=0.131  Sum_probs=222.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEEcCCCcEEEEeccccc------------------------CeeeEE
Q psy226          106 RSPVIKVIFHPVFSLMASCSE-DA-----TIRLWDYETGEYERALHGHLD------------------------SVQDIA  155 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~-dg-----~v~vwd~~~~~~~~~~~~h~~------------------------~V~~l~  155 (406)
                      ...|.+++|+|+|++|++++. |+     +|++||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            457899999999999999998 88     899999999988777765543                        389999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCc
Q psy226          156 FDQSGKLLVSCSADMSLKLWDMSTYQ--CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE  233 (406)
Q Consensus       156 ~~~~g~~l~sgs~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  233 (406)
                      |+|||++|++++. +.|.+||+.++.  ....+..|...+.+++|+|+|++|+.++ ++.|++||+.++........+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence            9999999999886 899999998872  3445667888899999999999999887 46899999998876655444433


Q ss_pred             c----------------EEEEEECCCCCEEEEEeCCC---------------------------------eEEEEeCCC-
Q psy226          234 W----------------VRQIKVSPDGTLLASCSNDH---------------------------------TARVWSLAT-  263 (406)
Q Consensus       234 ~----------------v~~l~~~~~~~~l~s~~~d~---------------------------------~v~vwd~~~-  263 (406)
                      .                +..++|+|||++|++++.|+                                 .|++||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence            2                37799999999999988776                                 889999987 


Q ss_pred             ccceeEEe--cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC-----CCcEEEEECCCCeEEEEEeCCCc-
Q psy226          264 KETKAELR--GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR-----DKTIKLWDVGSGSLLFTLIGHDN-  335 (406)
Q Consensus       264 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~lwd~~~~~~~~~~~~h~~-  335 (406)
                      ++......  .|...+..++| |+                  |.+|++++.     +..|++||+.+++....+..+.. 
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~-pD------------------g~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~  334 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNW-RD------------------PQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT  334 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEE-EE------------------TTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS
T ss_pred             CceEEecCCCCcceEEEEEEe-CC------------------CCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC
Confidence            76544332  47788999999 94                  667776553     56799999999988776665543 


Q ss_pred             ---CEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCccceeeccccceEEEE-EEeCCCCEEE-EeeCCC--eEEEeec
Q psy226          336 ---WVRGVTFHPGGKYLVSCGDDKTLRVWDTA-NKRNMKTLEAHSHFVTSL-DFHRAHPYVV-TGSVDK--TVKVWEC  405 (406)
Q Consensus       336 ---~v~~l~~s~~g~~l~sgs~d~~i~vwd~~-~~~~~~~l~~h~~~v~~l-~~~~~~~~l~-sgs~Dg--~v~iw~~  405 (406)
                         .+..++|+|+|+++++++.||.++||.+. ++. ...+..|...|..+ +|+|+++.|+ +++.|+  .++||++
T Consensus       335 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          335 WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV  411 (741)
T ss_dssp             CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred             cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence               34689999999999999999988888765 344 67777777778887 5999998775 555555  8999975

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=3.1e-27  Score=216.87  Aligned_cols=273  Identities=12%  Similarity=0.137  Sum_probs=204.8

Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeC-CCcEEEEeCCCCeE-EEEEecC
Q psy226          113 IFHPVFS-LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSA-DMSLKLWDMSTYQC-LKTMQGH  189 (406)
Q Consensus       113 ~~~p~~~-~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~-d~~i~vwd~~~~~~-~~~~~~h  189 (406)
                      .|.+++. .+++++.++.|++||..+++....+..+...+ +++|+|+|+++++++. ++.|.+||+.+++. ...+..+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            4555554 57788899999999999999888877766677 9999999997776665 88999999998887 7777777


Q ss_pred             CcceEEEEEecCCCEEEEEeCCC---cEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEE-EEEeCCCe-EEEEeCCCc
Q psy226          190 DHNVTGVAFLPNSDFVLSASRDK---TIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLL-ASCSNDHT-ARVWSLATK  264 (406)
Q Consensus       190 ~~~v~~~~~~p~~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~d~~-v~vwd~~~~  264 (406)
                      ..+..+++|+|++++++++..++   .|.+||+.++..+..+..+. ....++|+|+|+++ +++..++. +.+|++...
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            77666699999999998655553   89999999998888776544 46899999999855 45566688 999998754


Q ss_pred             ccee----EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEE-EEEeCCCcEEEEECCCCeE---EEEEeCCCcC
Q psy226          265 ETKA----ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYL-ATGSRDKTIKLWDVGSGSL---LFTLIGHDNW  336 (406)
Q Consensus       265 ~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~lwd~~~~~~---~~~~~~h~~~  336 (406)
                      ....    ...........++|+|                  +|.++ +++..++.|++||+.+++.   +..+..+ ..
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~sp------------------dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~  222 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTP------------------DGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NL  222 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECT------------------TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SC
T ss_pred             CcEeecCCccccCCCCccceEECC------------------CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CC
Confidence            3321    1123334567888887                  35544 5555689999999998887   7666644 56


Q ss_pred             EEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcc--ceeeccc----cc---eEEEEEEeCCCCEEEE-eeCCCeEEEeec
Q psy226          337 VRGVTFHPGGKYLVSCG-DDKTLRVWDTANKRN--MKTLEAH----SH---FVTSLDFHRAHPYVVT-GSVDKTVKVWEC  405 (406)
Q Consensus       337 v~~l~~s~~g~~l~sgs-~d~~i~vwd~~~~~~--~~~l~~h----~~---~v~~l~~~~~~~~l~s-gs~Dg~v~iw~~  405 (406)
                      +..++|+|+|++|+.++ .++.|.+||..+++.  +..+..+    ..   ....++|+|++++|++ +..++.|.+||+
T Consensus       223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~  302 (331)
T 3u4y_A          223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI  302 (331)
T ss_dssp             CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence            78999999999776554 578899999988766  3333221    11   2356899999998855 455679999996


Q ss_pred             C
Q psy226          406 R  406 (406)
Q Consensus       406 ~  406 (406)
                      .
T Consensus       303 ~  303 (331)
T 3u4y_A          303 S  303 (331)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=2.1e-26  Score=212.87  Aligned_cols=271  Identities=10%  Similarity=0.072  Sum_probs=218.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEE-EeCCCcEEEEe
Q psy226          105 HRSPVIKVIFHPVFSLMASCSE-------DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVS-CSADMSLKLWD  176 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~-------dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~s-gs~d~~i~vwd  176 (406)
                      ....+..++|+|+++.+++++.       ++.|.+||..+++....+.. ...+.+++|+|+|++++. +..++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            4456889999999998888774       56899999999998877764 345789999999996554 45579999999


Q ss_pred             CCCCeEEEEEecCCcc---------eEEEEEecCCCEEEEEe--CCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCC
Q psy226          177 MSTYQCLKTMQGHDHN---------VTGVAFLPNSDFVLSAS--RDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT  245 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~---------v~~~~~~p~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  245 (406)
                      ..+++.+..+..+...         +.+++|+|+++++++++  .++.|.+||..++..+..+..+...+..++|+|+|+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence            9999988877765422         68899999999877765  478999999999998888876666688899999999


Q ss_pred             EEEEEeCCCeEEEEeCCCccceeEEec----CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe-CCCcEEEEE
Q psy226          246 LLASCSNDHTARVWSLATKETKAELRG----HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS-RDKTIKLWD  320 (406)
Q Consensus       246 ~l~s~~~d~~v~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~lwd  320 (406)
                      ++++++.++.+.+||+.+.+....+..    +...+..++|+|+                  +.++++++ .++.|.+||
T Consensus       198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d------------------g~~l~~~~~~~~~v~~~d  259 (353)
T 3vgz_A          198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTA------------------RQRAFITDSKAAEVLVVD  259 (353)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETT------------------TTEEEEEESSSSEEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCC------------------CCEEEEEeCCCCEEEEEE
Confidence            999999999999999998877766653    4556778888883                  55555554 458999999


Q ss_pred             CCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCC
Q psy226          321 VGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCG-DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVD  397 (406)
Q Consensus       321 ~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs-~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~D  397 (406)
                      +.+++.+..+.....  ..++|+|+|++++.++ .++.|.+||..+++.+..+... ..+.+++|+|++++|+.+..+
T Consensus       260 ~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          260 TRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence            999998877765432  5699999999766555 7899999999999888877654 368999999999977665544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=3e-28  Score=247.26  Aligned_cols=277  Identities=14%  Similarity=0.151  Sum_probs=211.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEeccccc---CeeeEEECCCCCEEEEEeCC---------CcEEEE
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLD---SVQDIAFDQSGKLLVSCSAD---------MSLKLW  175 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~---~V~~l~~~~~g~~l~sgs~d---------~~i~vw  175 (406)
                      .+.+++|+|+++++++ +.||+|++||..+++....+.+|..   .|.+++|+|||++|++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            3567899999998877 7899999999999988888877765   49999999999999999875         778899


Q ss_pred             eCCCCeEEEEEe---cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccE-----------------
Q psy226          176 DMSTYQCLKTMQ---GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWV-----------------  235 (406)
Q Consensus       176 d~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v-----------------  235 (406)
                      |+.+++. ..+.   +|...+..++|+|+|+.|+.++. +.|++||+.++........+...+                 
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            9998875 3333   34445889999999999999876 799999999988766655544333                 


Q ss_pred             -EEEEECCCCCEEEEEeCCC----------------------------------eEEEEeCCCccceeEEecC------C
Q psy226          236 -RQIKVSPDGTLLASCSNDH----------------------------------TARVWSLATKETKAELRGH------D  274 (406)
Q Consensus       236 -~~l~~~~~~~~l~s~~~d~----------------------------------~v~vwd~~~~~~~~~~~~~------~  274 (406)
                       ..++|+|||+.|++++.|+                                  .|++||+.+++....+..+      .
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE  254 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence             7899999999999987653                                  7999999887755555544      6


Q ss_pred             ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC----CCcEEEEECCCCeEEEEEeC-CCcCEE----EEEEcCC
Q psy226          275 HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR----DKTIKLWDVGSGSLLFTLIG-HDNWVR----GVTFHPG  345 (406)
Q Consensus       275 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~lwd~~~~~~~~~~~~-h~~~v~----~l~~s~~  345 (406)
                      ..+..++|+|+                  |.++++.+.    +..|++||+.++++...+.. +..++.    .++|+|+
T Consensus       255 ~~~~~~~~SpD------------------g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd  316 (723)
T 1xfd_A          255 YYITMVKWATS------------------TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD  316 (723)
T ss_dssp             EEEEEEEESSS------------------SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT
T ss_pred             ceeEEEEEeCC------------------CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC
Confidence            77889999984                  666766543    35799999999987665543 445543    7899999


Q ss_pred             CCEEEE--EeCCC------eEEEEe-CCCCc--cceeeccccceEE-EEEEeCCCCEEEEeeCC---CeEEEeec
Q psy226          346 GKYLVS--CGDDK------TLRVWD-TANKR--NMKTLEAHSHFVT-SLDFHRAHPYVVTGSVD---KTVKVWEC  405 (406)
Q Consensus       346 g~~l~s--gs~d~------~i~vwd-~~~~~--~~~~l~~h~~~v~-~l~~~~~~~~l~sgs~D---g~v~iw~~  405 (406)
                      |+.|+.  +..++      .|++|| ..++.  +...+..+...+. .++|+|+++.|+..+.+   +.++||++
T Consensus       317 g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  391 (723)
T 1xfd_A          317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA  391 (723)
T ss_dssp             SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred             CCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence            997764  45677      577788 34443  1455553333344 47999999999766555   78999985

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.96  E-value=7.5e-28  Score=216.33  Aligned_cols=254  Identities=14%  Similarity=0.126  Sum_probs=200.2

Q ss_pred             EEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEecC-CcceEEEEEec
Q psy226          123 SCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST-YQCLKTMQGH-DHNVTGVAFLP  200 (406)
Q Consensus       123 tgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~-~~~~~~~~~h-~~~v~~~~~~p  200 (406)
                      +++.|++|++||..+++.. .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++......++ ...+.+++|+|
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            4578999999999998865 4556889999999999999999986 78999999998 8776666565 36788999999


Q ss_pred             CCCEEEEEe--CCCcEEEEEc--CCCeEEEEeecCCccEEEEEECCCCCEEE-EEeCCCeEEEEeCCC-ccceeEEecCC
Q psy226          201 NSDFVLSAS--RDKTIKMWEV--ATGYCVKTLTGHREWVRQIKVSPDGTLLA-SCSNDHTARVWSLAT-KETKAELRGHD  274 (406)
Q Consensus       201 ~~~~l~s~s--~d~~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~v~vwd~~~-~~~~~~~~~~~  274 (406)
                      ++++|++++  .++...+|.+  .++. ...+..+. .+..++|+|+++.++ +++.|+.+++|++.. ......+..+.
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  172 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE  172 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence            999999988  3345555554  4444 34444443 488899999999887 788899999998643 23345566777


Q ss_pred             ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe-CCCcEEEEECC-CCeEEEEEeCCCcCEEEEEEcCCCCEEEEE
Q psy226          275 HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS-RDKTIKLWDVG-SGSLLFTLIGHDNWVRGVTFHPGGKYLVSC  352 (406)
Q Consensus       275 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~lwd~~-~~~~~~~~~~h~~~v~~l~~s~~g~~l~sg  352 (406)
                      ..+.++.|+|+                  +.+++.++ .++.+++|++. .+..+..+..|...+..++|+|+|++|+++
T Consensus       173 ~~~~~~~~s~d------------------g~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  234 (297)
T 2ojh_A          173 GRNDGPDYSPD------------------GRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV  234 (297)
T ss_dssp             SCEEEEEECTT------------------SSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred             CccccceECCC------------------CCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence            88999999983                  56666655 58999999886 556667788888889999999999999888


Q ss_pred             eCC-----------CeEEEEeCCCCcc--ceeeccccceEEEEEEeCCCCEEEEeeCCC
Q psy226          353 GDD-----------KTLRVWDTANKRN--MKTLEAHSHFVTSLDFHRAHPYVVTGSVDK  398 (406)
Q Consensus       353 s~d-----------~~i~vwd~~~~~~--~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg  398 (406)
                      +.+           +.|++||+.+++.  +..+..|...+.+++|+|++++|++++.|.
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            765           5799999988765  334446777899999999999998887664

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=1e-26  Score=213.94  Aligned_cols=265  Identities=12%  Similarity=0.245  Sum_probs=193.1

Q ss_pred             EEEEEeCCCcEEEEEcC-CCcEE-EEecccccCeeeEEECCCCCEEEEEeCC-CcEEEEeCC--CCe--EEEEEecCCcc
Q psy226          120 LMASCSEDATIRLWDYE-TGEYE-RALHGHLDSVQDIAFDQSGKLLVSCSAD-MSLKLWDMS--TYQ--CLKTMQGHDHN  192 (406)
Q Consensus       120 ~latgs~dg~v~vwd~~-~~~~~-~~~~~h~~~V~~l~~~~~g~~l~sgs~d-~~i~vwd~~--~~~--~~~~~~~h~~~  192 (406)
                      ++++++.|+.|++||+. ++... .....|...+.+++|+|+|++|++++.+ +.|.+|++.  +++  .+..+..+. .
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence            45555889999999985 44322 2223477789999999999999988886 999999987  444  344555444 7


Q ss_pred             eEEEEEecCCCEEEEEeC-CCcEEEEEc---CCCeEEEEeecCCccEEEEEECCCCCEEEEEe-CCCeEEEEeCCC-ccc
Q psy226          193 VTGVAFLPNSDFVLSASR-DKTIKMWEV---ATGYCVKTLTGHREWVRQIKVSPDGTLLASCS-NDHTARVWSLAT-KET  266 (406)
Q Consensus       193 v~~~~~~p~~~~l~s~s~-d~~i~iwd~---~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~-~~~  266 (406)
                      +..++|+|++++|++++. ++.|.+||+   .++.....+..+ ..+.+++|+|+|+++++++ .++.|++||+.+ +..
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            889999999998876665 889999999   444455555444 3588899999999888877 899999999987 433


Q ss_pred             ee----EEec-CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEE-EEeCCCcEEEEECCC--CeE--EEEEe----C
Q psy226          267 KA----ELRG-HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLA-TGSRDKTIKLWDVGS--GSL--LFTLI----G  332 (406)
Q Consensus       267 ~~----~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~lwd~~~--~~~--~~~~~----~  332 (406)
                      ..    .+.. ....+..++|+|+                  +.+++ ++..++.|++||+..  +..  ...+.    +
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~pd------------------g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~  226 (343)
T 1ri6_A          165 VAQDPAEVTTVEGAGPRHMVFHPN------------------EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN  226 (343)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTT------------------SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred             eeecccccccCCCCCcceEEECCC------------------CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc
Confidence            21    2222 2346778888873                  55554 445889999999953  432  22222    1


Q ss_pred             C--CcCEEEEEEcCCCCEEE-EEeCCCeEEEEeCC--C--CccceeeccccceEEEEEEeCCCCEEEEee-CCCeEEEee
Q psy226          333 H--DNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTA--N--KRNMKTLEAHSHFVTSLDFHRAHPYVVTGS-VDKTVKVWE  404 (406)
Q Consensus       333 h--~~~v~~l~~s~~g~~l~-sgs~d~~i~vwd~~--~--~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs-~Dg~v~iw~  404 (406)
                      +  ...+..++|+|+|++|+ +++.++.|++||+.  +  .+.+..+..+.. +.+++|+|++++|++++ .|+.|.+|+
T Consensus       227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEE
Confidence            1  34677899999999887 45579999999997  2  344455555544 88999999999888777 689999995


Q ss_pred             c
Q psy226          405 C  405 (406)
Q Consensus       405 ~  405 (406)
                      +
T Consensus       306 ~  306 (343)
T 1ri6_A          306 I  306 (343)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.96  E-value=2.1e-26  Score=211.26  Aligned_cols=274  Identities=12%  Similarity=0.108  Sum_probs=202.1

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEecccc-c-CeeeEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEecC-----C
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHGHL-D-SVQDIAFDQSGKLL-VSCSADMSLKLWDMSTYQCLKTMQGH-----D  190 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~h~-~-~V~~l~~~~~g~~l-~sgs~d~~i~vwd~~~~~~~~~~~~h-----~  190 (406)
                      .++++++.+++|++||..+++....+.... . .+.+++|+|+|+.+ ++++.++.|.+||+.+++.+..+...     .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            478999999999999999998887776332 2 58899999999866 45556789999999998887766532     1


Q ss_pred             cceEEEEEecCCCEEEEEe------------CCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Q psy226          191 HNVTGVAFLPNSDFVLSAS------------RDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV  258 (406)
Q Consensus       191 ~~v~~~~~~p~~~~l~s~s------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~v  258 (406)
                      ..+.+++|+|+++++++++            .++.|.+||+.++..+..+.. ...+..++|+|+|++++++  ++.|++
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            2567899999999988886            579999999999888777764 3457789999999988887  689999


Q ss_pred             EeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCC---EEEEEeCCC----------cEEEEECCCCe
Q psy226          259 WSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGP---YLATGSRDK----------TIKLWDVGSGS  325 (406)
Q Consensus       259 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~s~~~d~----------~i~lwd~~~~~  325 (406)
                      ||+.+++....+..+... ..+.|+|+.......       ....+.   ....+..++          .|.+||+.+++
T Consensus       159 ~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  230 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQ-------HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE  230 (337)
T ss_dssp             EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCC-------CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred             EECCCCcEeeeeeccccC-CCceeCCCccEEeee-------ccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence            999887766555433210 011334321110000       000010   011111122          58999999987


Q ss_pred             EE-EEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          326 LL-FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       326 ~~-~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      .. ..+..+...+.+++|+|+|++|+++  ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.|+.|.+||
T Consensus       231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            64 3344566778899999999999988  799999999998887777644 4578999999999999999999999999


Q ss_pred             cC
Q psy226          405 CR  406 (406)
Q Consensus       405 ~~  406 (406)
                      ..
T Consensus       308 ~~  309 (337)
T 1pby_B          308 AE  309 (337)
T ss_dssp             TT
T ss_pred             Cc
Confidence            63

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=3e-26  Score=232.03  Aligned_cols=278  Identities=14%  Similarity=0.179  Sum_probs=209.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC-----C
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST-----Y  180 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~-----~  180 (406)
                      ..+|.+++|+|+ ..++.+. +++|++||+.+++... +..+...+.+++|+|+|++|+++ .|+.|++||+.+     +
T Consensus        81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g  156 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS  156 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred             ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence            357999999999 6555553 5999999999887644 44567789999999999999985 689999999988     7


Q ss_pred             eEEEEEecCCcc--------------eEEEEEecCCCEEEEEe---------------------------------CCCc
Q psy226          181 QCLKTMQGHDHN--------------VTGVAFLPNSDFVLSAS---------------------------------RDKT  213 (406)
Q Consensus       181 ~~~~~~~~h~~~--------------v~~~~~~p~~~~l~s~s---------------------------------~d~~  213 (406)
                      +.......+...              +.++.|+|||++|++++                                 .+..
T Consensus       157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence            765544444333              47899999999999987                                 4467


Q ss_pred             EEEEEcCCCeEEEEee--cCCccEEEEEECCCCCEEEEEeCCC-----eEEEEeCCCccceeEEe-c-CCc---eEEEEE
Q psy226          214 IKMWEVATGYCVKTLT--GHREWVRQIKVSPDGTLLASCSNDH-----TARVWSLATKETKAELR-G-HDH---TVECVA  281 (406)
Q Consensus       214 i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~-~-~~~---~v~~~~  281 (406)
                      |.+||+.++.......  .|...+..++|+|||+.|++++.++     .|++||+.++.....+. . +..   .+..+.
T Consensus       237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  316 (706)
T 2z3z_A          237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT  316 (706)
T ss_dssp             EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence            9999999887655442  4667899999999999999988776     89999998873333222 1 111   123455


Q ss_pred             eCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC-CCeEEEEEeCCCcCEEE-EEEcCCCCEEEEEe-CCC--
Q psy226          282 WAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG-SGSLLFTLIGHDNWVRG-VTFHPGGKYLVSCG-DDK--  356 (406)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~-~~~~~~~~~~h~~~v~~-l~~s~~g~~l~sgs-~d~--  356 (406)
                      |+|.                .+|.++++++.|+.++||++. ++..+..+..|...+.. ++|+|+|+.|+.++ .++  
T Consensus       317 ~sp~----------------~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~  380 (706)
T 2z3z_A          317 FLPG----------------SNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPL  380 (706)
T ss_dssp             ECTT----------------CSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTT
T ss_pred             eecC----------------CCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCc
Confidence            6551                036689999999999999876 67777888888777877 79999999876554 444  


Q ss_pred             --eEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCC----CeEEEeec
Q psy226          357 --TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVD----KTVKVWEC  405 (406)
Q Consensus       357 --~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~D----g~v~iw~~  405 (406)
                        .|+.||..+++ ...+. |...+.+++|+|++++|+..+.+    +.|.+||.
T Consensus       381 ~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          381 ERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             CBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred             eEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence              67777877765 44444 56678999999999988876444    56999986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=2.5e-26  Score=242.16  Aligned_cols=279  Identities=9%  Similarity=0.062  Sum_probs=231.7

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYET-GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ..+.+|...+.++.|+++ .++++++.||++.||.+.. +.....+..|. .+..++|+|+|+.|+.+ .++.|.+||+.
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~  273 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD  273 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC
Confidence            345789999999999998 7778888999999998653 33345555554 46778999999999887 48999999995


Q ss_pred             CCeEEEEEec-----------CCcceEEEEEe-cCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCc-cEEEEEECCCCC
Q psy226          179 TYQCLKTMQG-----------HDHNVTGVAFL-PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE-WVRQIKVSPDGT  245 (406)
Q Consensus       179 ~~~~~~~~~~-----------h~~~v~~~~~~-p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~  245 (406)
                      ..+ +..+.+           |...+.+++|+ |+|+.|++++ ++.|.+|++.++... .+..|.. .+..++|+ +|+
T Consensus       274 ~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~  349 (1045)
T 1k32_A          274 TEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKV  349 (1045)
T ss_dssp             TCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEE
T ss_pred             ceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCC
Confidence            443 335544           34478999999 9999988887 789999999887644 4667777 89999999 999


Q ss_pred             EEEEEeCCCeEE-EEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC
Q psy226          246 LLASCSNDHTAR-VWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG  324 (406)
Q Consensus       246 ~l~s~~~d~~v~-vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~  324 (406)
                      .++.++.++.+. +||+.+.... .+.+|...+..++|+|                  +|.+|++++.++.|++||+.++
T Consensus       350 ~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp------------------DG~~la~~~~~~~v~~~d~~tg  410 (1045)
T 1k32_A          350 AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDR------------------NGKFAVVANDRFEIMTVDLETG  410 (1045)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECT------------------TSSEEEEEETTSEEEEEETTTC
T ss_pred             eEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECC------------------CCCEEEEECCCCeEEEEECCCC
Confidence            999999988888 9998876544 3447778899999998                  4789999999999999999999


Q ss_pred             eEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCC----------eEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEe
Q psy226          325 SLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK----------TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG  394 (406)
Q Consensus       325 ~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~----------~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sg  394 (406)
                      +......+|...+.+++|||||++|++++.++          .|++||+.+++ ...+..|...+.+++|+|+|++|+++
T Consensus       411 ~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~  489 (1045)
T 1k32_A          411 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYL  489 (1045)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred             ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEE
Confidence            98877778999999999999999998887654          99999999877 66777788889999999999999999


Q ss_pred             eCCCeEEEeec
Q psy226          395 SVDKTVKVWEC  405 (406)
Q Consensus       395 s~Dg~v~iw~~  405 (406)
                      +.++...+|+.
T Consensus       490 s~~~~~~~~~~  500 (1045)
T 1k32_A          490 SYRSLDPSPDR  500 (1045)
T ss_dssp             ESCCCCCEECS
T ss_pred             ecccCCcCcch
Confidence            99888888763

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=3.2e-26  Score=233.09  Aligned_cols=275  Identities=12%  Similarity=0.111  Sum_probs=212.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGE--YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKT  185 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~  185 (406)
                      .|.+++|+||+++|++++. +.|++||+.++.  ....+..|...+.+++|+|||++|+.++ ++.|++||+.+++....
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence            3889999999999999987 999999999882  3445667888899999999999999987 46899999998876654


Q ss_pred             EecCCcc----------------eEEEEEecCCCEEEEEeCCC---------------------------------cEEE
Q psy226          186 MQGHDHN----------------VTGVAFLPNSDFVLSASRDK---------------------------------TIKM  216 (406)
Q Consensus       186 ~~~h~~~----------------v~~~~~~p~~~~l~s~s~d~---------------------------------~i~i  216 (406)
                      ...+...                +.+++|+|||++|++++.|+                                 .|.+
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            4444332                47799999999999988765                                 7899


Q ss_pred             EEcCC-CeEEEEee--cCCccEEEEEECCCCCEEEEEeC-----CCeEEEEeCCCccceeEEecCCc----eEEEEEeCC
Q psy226          217 WEVAT-GYCVKTLT--GHREWVRQIKVSPDGTLLASCSN-----DHTARVWSLATKETKAELRGHDH----TVECVAWAP  284 (406)
Q Consensus       217 wd~~~-~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~-----d~~v~vwd~~~~~~~~~~~~~~~----~v~~~~~~~  284 (406)
                      ||+.+ +.......  .|...+..++| |||++|+.++.     +..|++||+.+++....+..+..    .+..++|+|
T Consensus       268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred             EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence            99988 87655443  47788999999 99999987654     57899999998876665554432    334667776


Q ss_pred             CCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC-CCeEEEEEeCCCcCEEEE-EEcCCCCEEE-EEeCCC--eEE
Q psy226          285 GVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG-SGSLLFTLIGHDNWVRGV-TFHPGGKYLV-SCGDDK--TLR  359 (406)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~-~~~~~~~~~~h~~~v~~l-~~s~~g~~l~-sgs~d~--~i~  359 (406)
                                        +|.++++++.|+.++||.+. .+. ...+..|...|..+ .|+|+|+.|+ +++.++  .++
T Consensus       347 ------------------dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~  407 (741)
T 2ecf_A          347 ------------------DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQ  407 (741)
T ss_dssp             ------------------TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBE
T ss_pred             ------------------CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEE
Confidence                              46688899999988888764 445 77788888888887 5999999775 455555  899


Q ss_pred             EEeCCC-CccceeeccccceEEEEEEeCCCCEEEEeeCC----CeEEEeec
Q psy226          360 VWDTAN-KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVD----KTVKVWEC  405 (406)
Q Consensus       360 vwd~~~-~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~D----g~v~iw~~  405 (406)
                      ||++.. +.....+.. ...+.+++|+|++++|+....+    +.+.+|+.
T Consensus       408 l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          408 IYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             EEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             EEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence            999864 555666665 5568899999999988765433    35666653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.95  E-value=5.8e-26  Score=224.87  Aligned_cols=267  Identities=10%  Similarity=0.070  Sum_probs=204.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeC---CCcEEEEeCCC---
Q psy226          107 SPVIKVIFHPVFSLMASCSE-DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSA---DMSLKLWDMST---  179 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~-dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~---d~~i~vwd~~~---  179 (406)
                      .+|++++|+|||+.||.++. ||+++||++.+++..+....+...|.+++|+|+ +++++++.   +...++|.+..   
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~  100 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP  100 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence            47999999999999999887 999999999777654444333368999999999 77777765   45566654432   


Q ss_pred             CeEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCC----C
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSND----H  254 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d----~  254 (406)
                      +... .+.. ...+...+|+|+++ .+++.+.++.+.+||+.++........+.   .+++|+|||+++++++.|    +
T Consensus       101 g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A          101 GEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             TCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEE
T ss_pred             Cccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCe
Confidence            2222 3322 22344678888886 33344444455599999987665554433   789999999999988877    7


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC--cEEEEECCCCeEEEEEeC
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK--TIKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~--~i~lwd~~~~~~~~~~~~  332 (406)
                      .|++||+.+++.. .+..|...+..++|+|                  +|.+|+++..++  .|++||+.+++.. .+.+
T Consensus       176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~Sp------------------DG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~  235 (582)
T 3o4h_A          176 SLFTSNLSSGGLR-VFDSGEGSFSSASISP------------------GMKVTAGLETAREARLVTVDPRDGSVE-DLEL  235 (582)
T ss_dssp             EEEEEETTTCCCE-EECCSSCEEEEEEECT------------------TSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred             EEEEEcCCCCCce-EeecCCCccccceECC------------------CCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence            8999999877654 6778888899999998                  477888888888  8999999998887 7777


Q ss_pred             CCcCEEEEE--------EcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCe---EE
Q psy226          333 HDNWVRGVT--------FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKT---VK  401 (406)
Q Consensus       333 h~~~v~~l~--------~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~---v~  401 (406)
                      |...+..++        |+|||..+++++.|+++++|++  ++...   ...+.|.+++|+ +++++++++.+.+   +.
T Consensus       236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~  309 (582)
T 3o4h_A          236 PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIV  309 (582)
T ss_dssp             SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEE
Confidence            877777777        9999999999999999999999  65544   334678999999 9999999888754   56


Q ss_pred             Eeec
Q psy226          402 VWEC  405 (406)
Q Consensus       402 iw~~  405 (406)
                      +|+.
T Consensus       310 ~~d~  313 (582)
T 3o4h_A          310 SLPS  313 (582)
T ss_dssp             EETT
T ss_pred             EEcC
Confidence            6553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=2.8e-25  Score=234.13  Aligned_cols=273  Identities=12%  Similarity=-0.000  Sum_probs=223.2

Q ss_pred             CCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEcCCCcEEEEeccccc-CeeeEEECCCCCEEEEEeCCCcEE-EEeCCCCe
Q psy226          105 HRSPVIKVIFH-PVFSLMASCSEDATIRLWDYETGEYERALHGHLD-SVQDIAFDQSGKLLVSCSADMSLK-LWDMSTYQ  181 (406)
Q Consensus       105 h~~~V~~v~~~-p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~-~V~~l~~~~~g~~l~sgs~d~~i~-vwd~~~~~  181 (406)
                      |...|.+++|+ |+++.||+++ ++.|.+|+..+++.. .+..|.. .+.+++|+ +|+.|+.++.+..+. +||+.+++
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~  370 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK  370 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence            44578999999 9999999988 889999999888754 3666777 89999999 999999999888888 99998776


Q ss_pred             EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC-------
Q psy226          182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH-------  254 (406)
Q Consensus       182 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~-------  254 (406)
                      .. .+.+|...+..++|+|+|++|++++.++.|++||+.++.....+.+|...+..++|+|||++|++++.++       
T Consensus       371 ~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~  449 (1045)
T 1k32_A          371 AE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY  449 (1045)
T ss_dssp             EE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             ce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence            54 4447888999999999999999999999999999999988888878999999999999999998887654       


Q ss_pred             ---eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe------
Q psy226          255 ---TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS------  325 (406)
Q Consensus       255 ---~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~------  325 (406)
                         .|++||+.+++ ...+..|...+..++|+|                  +|.+|+.++.++..++|+.....      
T Consensus       450 ~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp------------------dG~~l~~~s~~~~~~~~~~~~~~~~~~~~  510 (1045)
T 1k32_A          450 VMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA------------------DSKNLYYLSYRSLDPSPDRVVLNFSFEVV  510 (1045)
T ss_dssp             CEEEEEEEETTTTE-EEECSCSSSBEEEEEECT------------------TSCEEEEEESCCCCCEECSSSSCEECCSC
T ss_pred             CCCeEEEEECCCCc-EEEeeCCCcccCCceEcC------------------CCCEEEEEecccCCcCcchhccccccccC
Confidence               89999998876 666778888888999998                  46778888877766666543221      


Q ss_pred             -------------------------------------EEEEEeCCCcCEEEEEEcCCCCEEEE-------------EeCC
Q psy226          326 -------------------------------------LLFTLIGHDNWVRGVTFHPGGKYLVS-------------CGDD  355 (406)
Q Consensus       326 -------------------------------------~~~~~~~h~~~v~~l~~s~~g~~l~s-------------gs~d  355 (406)
                                                           .+..+..|...+..++++|+|+++++             .+.+
T Consensus       511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~  590 (1045)
T 1k32_A          511 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEK  590 (1045)
T ss_dssp             BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCC
T ss_pred             ceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCC
Confidence                                                 12234456677899999999988875             1235


Q ss_pred             CeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          356 KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       356 ~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ..|++||+.+++. ..+.   ..+.+++|+|||++|++++.| .|++||.
T Consensus       591 ~~l~~~d~~~~~~-~~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~  635 (1045)
T 1k32_A          591 GVLLKYDVKTRKV-TEVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFP  635 (1045)
T ss_dssp             EEEEEEETTTCCE-EEEE---EEEEEEEECTTSCEEEEEETT-SCEEEEE
T ss_pred             ceEEEEECCCCcE-EEee---cCcceEEECCCCCEEEEEcCC-cEEEEeC
Confidence            6788999988764 3333   568899999999999999866 7999986

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.94  E-value=1.7e-24  Score=199.09  Aligned_cols=265  Identities=13%  Similarity=0.159  Sum_probs=188.9

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcC--CCcEE--EEecccccCeeeEEECCCCCEEEEEeC-CCcEEEEe
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSED-ATIRLWDYE--TGEYE--RALHGHLDSVQDIAFDQSGKLLVSCSA-DMSLKLWD  176 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~d-g~v~vwd~~--~~~~~--~~~~~h~~~V~~l~~~~~g~~l~sgs~-d~~i~vwd  176 (406)
                      ..|...+.+++|+|++++|++++.+ +.|.+|++.  +++..  ..+..+. .+.+++|+|+|++|++++. ++.|.+||
T Consensus        34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            4577789999999999998888887 999999997  66543  3344333 7899999999998876665 88999999


Q ss_pred             C---CCCeEEEEEecCCcceEEEEEecCCCEEEEEe-CCCcEEEEEcCC-CeEEE----Eeec-CCccEEEEEECCCCCE
Q psy226          177 M---STYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS-RDKTIKMWEVAT-GYCVK----TLTG-HREWVRQIKVSPDGTL  246 (406)
Q Consensus       177 ~---~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~~i~iwd~~~-~~~~~----~~~~-~~~~v~~l~~~~~~~~  246 (406)
                      +   .+.+....+..+ ..+.+++|+|+++++++++ .++.|.+||+.+ +....    .+.. ....+..++|+|+|++
T Consensus       113 ~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~  191 (343)
T 1ri6_A          113 LEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  191 (343)
T ss_dssp             EETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             CCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE
Confidence            9   444455555444 4588999999999888877 899999999987 64432    2222 3346888999999997


Q ss_pred             EEEEe-CCCeEEEEeCCC--ccc--eeEEe----cC--CceEEEEEeCCCCCccccccccCCCCCCCCCCEEE-EEeCCC
Q psy226          247 LASCS-NDHTARVWSLAT--KET--KAELR----GH--DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLA-TGSRDK  314 (406)
Q Consensus       247 l~s~~-~d~~v~vwd~~~--~~~--~~~~~----~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~  314 (406)
                      ++.++ .++.+.+|++..  +..  .....    ++  ...+..++|+|                  ++.+++ ++..++
T Consensus       192 l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~------------------dg~~l~v~~~~~~  253 (343)
T 1ri6_A          192 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP------------------DGRHLYACDRTAS  253 (343)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT------------------TSSEEEEEETTTT
T ss_pred             EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC------------------CCCEEEEEecCCC
Confidence            75554 899999999954  222  11221    11  22455678877                  355565 555789


Q ss_pred             cEEEEECC--C--CeEEEEEeCCCcCEEEEEEcCCCCEEEEEe-CCCeEEEEeC--CCCc--cceeeccccceEEEEEEe
Q psy226          315 TIKLWDVG--S--GSLLFTLIGHDNWVRGVTFHPGGKYLVSCG-DDKTLRVWDT--ANKR--NMKTLEAHSHFVTSLDFH  385 (406)
Q Consensus       315 ~i~lwd~~--~--~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs-~d~~i~vwd~--~~~~--~~~~l~~h~~~v~~l~~~  385 (406)
                      .|++||+.  +  .+.+..+..+.. +.+++|+|+|++|++++ .++.|.+|++  .+++  .+..+... ....+++|.
T Consensus       254 ~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~  331 (343)
T 1ri6_A          254 LITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVN  331 (343)
T ss_dssp             EEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEE
T ss_pred             EEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEE
Confidence            99999998  3  344555555544 88999999999988887 6899999954  4543  33444332 345677777


Q ss_pred             CCCC
Q psy226          386 RAHP  389 (406)
Q Consensus       386 ~~~~  389 (406)
                      |+..
T Consensus       332 ~~~~  335 (343)
T 1ri6_A          332 AHEG  335 (343)
T ss_dssp             EEC-
T ss_pred             cccC
Confidence            6543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=1.8e-25  Score=200.70  Aligned_cols=237  Identities=14%  Similarity=0.103  Sum_probs=187.8

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcEEEEeccc-ccCeeeEEECCCCCEEEEEe--CCCcEEE
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYET-GEYERALHGH-LDSVQDIAFDQSGKLLVSCS--ADMSLKL  174 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~-~~~~~~~~~h-~~~V~~l~~~~~g~~l~sgs--~d~~i~v  174 (406)
                      ...+..|...|.+++|+|++++|++++ ++.|++||+.+ ++......+| ...|.+++|+|+|++|++++  .++..+|
T Consensus        34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l  112 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAI  112 (297)
T ss_dssp             EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEE
T ss_pred             eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceE
Confidence            345667899999999999999999987 78999999999 8877766666 47899999999999999998  3345555


Q ss_pred             Ee--CCCCeEEEEEecCCcceEEEEEecCCCEEE-EEeCCCcEEEEEcCC-CeEEEEeecCCccEEEEEECCCCCEEEEE
Q psy226          175 WD--MSTYQCLKTMQGHDHNVTGVAFLPNSDFVL-SASRDKTIKMWEVAT-GYCVKTLTGHREWVRQIKVSPDGTLLASC  250 (406)
Q Consensus       175 wd--~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  250 (406)
                      |.  ..+++ ...+..+. .+..++|+|++++|+ +++.|+.+++|++.. +.....+..+...+.+++|+|+|++++.+
T Consensus       113 ~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  190 (297)
T 2ojh_A          113 YLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFN  190 (297)
T ss_dssp             EEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEE
Confidence            54  45544 33444333 588999999999877 788899999998632 33446677788889999999999988776


Q ss_pred             e-CCCeEEEEeCC-CccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC-----------CcEE
Q psy226          251 S-NDHTARVWSLA-TKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD-----------KTIK  317 (406)
Q Consensus       251 ~-~d~~v~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----------~~i~  317 (406)
                      + .++.+++|++. .......+..|...+..+.|+|                  ++.+|++++.+           +.|.
T Consensus       191 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~------------------dg~~l~~~~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          191 SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP------------------SGDKVVFVSYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT------------------TSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred             ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC------------------CCCEEEEEEcCCCCCcccccCceEEE
Confidence            6 59999999986 4555667777888899999998                  46778777765           5699


Q ss_pred             EEECCCCeE--EEEEeCCCcCEEEEEEcCCCCEEEEEeCCC
Q psy226          318 LWDVGSGSL--LFTLIGHDNWVRGVTFHPGGKYLVSCGDDK  356 (406)
Q Consensus       318 lwd~~~~~~--~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~  356 (406)
                      +||+.+++.  +..+.+|...+.+++|+|+|++|++++.+.
T Consensus       253 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          253 LMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            999988754  445557888899999999999998877653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=1.7e-23  Score=193.36  Aligned_cols=261  Identities=16%  Similarity=0.216  Sum_probs=185.2

Q ss_pred             CCCcEEEEEc--CCCcEEE-EecccccCeeeEEECCCCCEEEEEeC---CCcEEEEeCCCCe--EEEEEecCCcceEEEE
Q psy226          126 EDATIRLWDY--ETGEYER-ALHGHLDSVQDIAFDQSGKLLVSCSA---DMSLKLWDMSTYQ--CLKTMQGHDHNVTGVA  197 (406)
Q Consensus       126 ~dg~v~vwd~--~~~~~~~-~~~~h~~~V~~l~~~~~g~~l~sgs~---d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~  197 (406)
                      .++.|.+|++  .++++.. ....+...+..++|+|+|+ |++++.   ++.|.+||+.+++  .+..+..+...+..++
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            3556777765  4566543 3345667788999999999 555554   6899999997665  3445455777888999


Q ss_pred             EecCCCEEEEEe-CCCcEEEEEcC-CCe--EEEEeec---------CCccEEEEEECCCCCEEEEEeCCCeEEEEeCC-C
Q psy226          198 FLPNSDFVLSAS-RDKTIKMWEVA-TGY--CVKTLTG---------HREWVRQIKVSPDGTLLASCSNDHTARVWSLA-T  263 (406)
Q Consensus       198 ~~p~~~~l~s~s-~d~~i~iwd~~-~~~--~~~~~~~---------~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~-~  263 (406)
                      |+|++++|++++ .+++|.+|++. ++.  .+..+..         +...+.+++|+|+|+++++...++.|++|++. +
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence            999999888887 68999999995 332  2333321         12347889999999977777778999999998 3


Q ss_pred             ccce--eEEecC-CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE-EeCCCcEEEEECCC--CeE--EEEEeCCC-
Q psy226          264 KETK--AELRGH-DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT-GSRDKTIKLWDVGS--GSL--LFTLIGHD-  334 (406)
Q Consensus       264 ~~~~--~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~lwd~~~--~~~--~~~~~~h~-  334 (406)
                      +...  ..+..+ ...+..++|+|                  +|.++++ +..++.|++|++..  ++.  +..+.... 
T Consensus       173 g~~~~~~~~~~~~g~~p~~~~~sp------------------dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~  234 (347)
T 3hfq_A          173 GQLSEQSVLTMEAGFGPRHLVFSP------------------DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA  234 (347)
T ss_dssp             SCEEEEEEEECCTTCCEEEEEECT------------------TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT
T ss_pred             CcEEEeeeEEcCCCCCCceEEECC------------------CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC
Confidence            3322  112222 23566788887                  4665544 56788999999864  543  22333322 


Q ss_pred             -----cCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCC---CccceeeccccceEEEEEEeCCCCEEEEeeCC-CeEEEee
Q psy226          335 -----NWVRGVTFHPGGKYL-VSCGDDKTLRVWDTAN---KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVD-KTVKVWE  404 (406)
Q Consensus       335 -----~~v~~l~~s~~g~~l-~sgs~d~~i~vwd~~~---~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~D-g~v~iw~  404 (406)
                           ..+..++|+|+|++| +++..++.|.+||+..   .+.+..+..+...+..++|+|++++|++++.+ +.|.+|+
T Consensus       235 ~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~  314 (347)
T 3hfq_A          235 DYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYA  314 (347)
T ss_dssp             TCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence                 458899999999987 5666789999999873   24455566666678899999999988877654 8999995


Q ss_pred             c
Q psy226          405 C  405 (406)
Q Consensus       405 ~  405 (406)
                      +
T Consensus       315 ~  315 (347)
T 3hfq_A          315 R  315 (347)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.94  E-value=4.2e-24  Score=196.97  Aligned_cols=272  Identities=11%  Similarity=0.046  Sum_probs=193.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccc-cCeeeEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEec
Q psy226          111 KVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHL-DSVQDIAFDQSGKLLV-SCSADMSLKLWDMSTYQCLKTMQG  188 (406)
Q Consensus       111 ~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~-~~V~~l~~~~~g~~l~-sgs~d~~i~vwd~~~~~~~~~~~~  188 (406)
                      .+++++++.++++++.+++|++||..+++....+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++....+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45688889999999999999999999999887776543 2578999999998665 555789999999999988777653


Q ss_pred             CC------cceEEEEEecCCCEEEEEeCC------------CcEEEEEcCCCe---EEEEeecCCccEEEEEECCCCCEE
Q psy226          189 HD------HNVTGVAFLPNSDFVLSASRD------------KTIKMWEVATGY---CVKTLTGHREWVRQIKVSPDGTLL  247 (406)
Q Consensus       189 h~------~~v~~~~~~p~~~~l~s~s~d------------~~i~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l  247 (406)
                      ..      ..+.+++|+|+++++++++.+            +.|.+||+.++.   .+..+.. ...+.+++|+|+|+ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-E
Confidence            32      237789999999999988865            899999998853   3334433 34588899999999 5


Q ss_pred             EEEeCCCeEEEEeCCCccceeEEecCCc------------------------eEEEEEeCCCCCccccccccCCCCCCCC
Q psy226          248 ASCSNDHTARVWSLATKETKAELRGHDH------------------------TVECVAWAPGVASESISEAAGRPPGQGG  303 (406)
Q Consensus       248 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (406)
                      ++++.  .|.+||+.+++....+..+..                        ....+++.++....              
T Consensus       162 ~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------------  225 (349)
T 1jmx_B          162 YVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQD--------------  225 (349)
T ss_dssp             EEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------------------
T ss_pred             EEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCC--------------
Confidence            55543  499999988776655543220                        11222222210000              


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEE-EEEeCCCcCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEE
Q psy226          304 GPYLATGSRDKTIKLWDVGSGSLL-FTLIGHDNWVRGVTFHP-GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTS  381 (406)
Q Consensus       304 ~~~l~s~~~d~~i~lwd~~~~~~~-~~~~~h~~~v~~l~~s~-~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~  381 (406)
                         .........+..+|..+++.. ..+..+...+.+++|+| +|++++++  ++.|++||+.+++.+..+... ..+.+
T Consensus       226 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~  299 (349)
T 1jmx_B          226 ---PATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYC  299 (349)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCE
T ss_pred             ---ccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccc
Confidence               000000001222444444321 12233566789999999 99999988  889999999998887777543 34679


Q ss_pred             EEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          382 LDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       382 l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ++|+|++++|++++.++.|.+||.+
T Consensus       300 ~~~s~dg~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          300 VAFDKKGDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             EEECSSSSCEEEESBSSEEEEEETT
T ss_pred             eEECCCCCEEEEecCCCeEEEEecc
Confidence            9999999988888899999999963

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=8.8e-25  Score=221.27  Aligned_cols=271  Identities=15%  Similarity=0.174  Sum_probs=199.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE-EEecccc-----------------cCeeeEEECCCCCEEEEEeCCC
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYETGEYE-RALHGHL-----------------DSVQDIAFDQSGKLLVSCSADM  170 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~-~~~~~h~-----------------~~V~~l~~~~~g~~l~sgs~d~  170 (406)
                      +..+.|.  +..+++++.|+ | +||..+++.. ..+..|.                 ..|.+++|+|+ ..++.+ .|+
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence            3446677  66778888888 8 9999999873 3343333                 46999999999 666555 459


Q ss_pred             cEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC-----CeEEEEeecCCcc-----------
Q psy226          171 SLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT-----GYCVKTLTGHREW-----------  234 (406)
Q Consensus       171 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~-----~~~~~~~~~~~~~-----------  234 (406)
                      .|++||+.+++.. .+..+...+.+++|+|+|+.|+++ .|+.|++||+.+     +........+...           
T Consensus       102 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee  179 (706)
T 2z3z_A          102 GLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE  179 (706)
T ss_dssp             EEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred             EEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence            9999999988764 444567778899999999999885 689999999998     7765544444332           


Q ss_pred             ---EEEEEECCCCCEEEEEe---------------------------------CCCeEEEEeCCCccceeEE--ecCCce
Q psy226          235 ---VRQIKVSPDGTLLASCS---------------------------------NDHTARVWSLATKETKAEL--RGHDHT  276 (406)
Q Consensus       235 ---v~~l~~~~~~~~l~s~~---------------------------------~d~~v~vwd~~~~~~~~~~--~~~~~~  276 (406)
                         +..++|+|||++|++++                                 .+..|++||+.+++.....  ..|...
T Consensus       180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  259 (706)
T 2z3z_A          180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF  259 (706)
T ss_dssp             TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred             cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence               47899999999999987                                 4578999999887654333  246678


Q ss_pred             EEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC-----cEEEEECCCCeEEEEEe--CCCcC---EEEEEEcC--
Q psy226          277 VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK-----TIKLWDVGSGSLLFTLI--GHDNW---VRGVTFHP--  344 (406)
Q Consensus       277 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~lwd~~~~~~~~~~~--~h~~~---v~~l~~s~--  344 (406)
                      +..++|+|                  +|.++++++.++     .|++||+.+++....+.  .+..+   +.+++|+|  
T Consensus       260 ~~~~~~sp------------------dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~  321 (706)
T 2z3z_A          260 LTNLSWSP------------------DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGS  321 (706)
T ss_dssp             EEEEEECT------------------TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTC
T ss_pred             EeeEEEEC------------------CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCC
Confidence            99999998                  477788877765     89999999984333332  23332   46789999  


Q ss_pred             CCCEEEEEeCCCeEEEEeCC-CCccceeeccccceEEE-EEEeCCCCEEEEee-CCC----eEEEeec
Q psy226          345 GGKYLVSCGDDKTLRVWDTA-NKRNMKTLEAHSHFVTS-LDFHRAHPYVVTGS-VDK----TVKVWEC  405 (406)
Q Consensus       345 ~g~~l~sgs~d~~i~vwd~~-~~~~~~~l~~h~~~v~~-l~~~~~~~~l~sgs-~Dg----~v~iw~~  405 (406)
                      +|++|++++.|+.++||++. ++..+..+..|...+.+ ++|+|+++.|+.++ .++    .|..||.
T Consensus       322 dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred             CCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence            99999999999999999876 56667778777777776 89999999876554 444    4555553

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=6.8e-25  Score=222.59  Aligned_cols=275  Identities=10%  Similarity=0.082  Sum_probs=199.8

Q ss_pred             EEeccCCC---CeEEEEEcCCCCEEEEEeCC---------CcEEEEEcCCCcEEEEec---ccccCeeeEEECCCCCEEE
Q psy226          100 FALSGHRS---PVIKVIFHPVFSLMASCSED---------ATIRLWDYETGEYERALH---GHLDSVQDIAFDQSGKLLV  164 (406)
Q Consensus       100 ~~l~~h~~---~V~~v~~~p~~~~latgs~d---------g~v~vwd~~~~~~~~~~~---~h~~~V~~l~~~~~g~~l~  164 (406)
                      ..+.+|..   .|.+++||||+++|++++.+         +.+.+||+.+++. ..+.   +|...+..++|+|||+.|+
T Consensus        51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la  129 (723)
T 1xfd_A           51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLI  129 (723)
T ss_dssp             EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred             EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEE
Confidence            34555654   49999999999999999875         7788999999876 3333   4555689999999999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEEecCCcce------------------EEEEEecCCCEEEEEeCCC--------------
Q psy226          165 SCSADMSLKLWDMSTYQCLKTMQGHDHNV------------------TGVAFLPNSDFVLSASRDK--------------  212 (406)
Q Consensus       165 sgs~d~~i~vwd~~~~~~~~~~~~h~~~v------------------~~~~~~p~~~~l~s~s~d~--------------  212 (406)
                      .++. +.|++||+.+++.......+...+                  .+++|+|||+.|++++.|+              
T Consensus       130 ~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~  208 (723)
T 1xfd_A          130 FIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS  208 (723)
T ss_dssp             EEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred             EEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc
Confidence            9886 799999999887766655544433                  7899999999999887653              


Q ss_pred             --------------------cEEEEEcCCCeEEEEeecC------CccEEEEEECCCCCEEEEEeC----CCeEEEEeCC
Q psy226          213 --------------------TIKMWEVATGYCVKTLTGH------REWVRQIKVSPDGTLLASCSN----DHTARVWSLA  262 (406)
Q Consensus       213 --------------------~i~iwd~~~~~~~~~~~~~------~~~v~~l~~~~~~~~l~s~~~----d~~v~vwd~~  262 (406)
                                          .|++||+.++.....+..+      ...+..++|+|||+++++.+.    +..|++||+.
T Consensus       209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~  288 (723)
T 1xfd_A          209 IYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT  288 (723)
T ss_dssp             SSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred             CCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC
Confidence                                7999999988765666654      667899999999998877653    3679999998


Q ss_pred             CccceeEEec-CCceE----EEEEeCCCCCccccccccCCCCCCCCCCEEEE--EeCCC------cEEEEE-CCCCe--E
Q psy226          263 TKETKAELRG-HDHTV----ECVAWAPGVASESISEAAGRPPGQGGGPYLAT--GSRDK------TIKLWD-VGSGS--L  326 (406)
Q Consensus       263 ~~~~~~~~~~-~~~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--~~~d~------~i~lwd-~~~~~--~  326 (406)
                      +++....+.. +...+    ..++|+|                  +|..|+.  +..++      .|.+|| ...+.  +
T Consensus       289 ~g~~~~~~~~~~~~~~~~~~~~~~~sp------------------dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~  350 (723)
T 1xfd_A          289 TGVCTKKHEDESEAWLHRQNEEPVFSK------------------DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN  350 (723)
T ss_dssp             TCCEEEEEEEECSSCCCCCCCCCEECT------------------TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC
T ss_pred             CCcceEEEEeccCCEEeccCCCceEcC------------------CCCeEEEEEecccCCCcceeEEEEEeccCCCCccc
Confidence            8776554433 22222    2567776                  3554543  55666      577788 34443  1


Q ss_pred             EEEEeCCCcCEEE-EEEcCCCCEEEEEeCC---CeEEEEeCCCCc--cceeecc---ccceEEEEEEeCCCCEEEEe
Q psy226          327 LFTLIGHDNWVRG-VTFHPGGKYLVSCGDD---KTLRVWDTANKR--NMKTLEA---HSHFVTSLDFHRAHPYVVTG  394 (406)
Q Consensus       327 ~~~~~~h~~~v~~-l~~s~~g~~l~sgs~d---~~i~vwd~~~~~--~~~~l~~---h~~~v~~l~~~~~~~~l~sg  394 (406)
                      ...+..+...+.. ++|+|+|++|+..+.+   +.+++|++....  ....+..   |...+..++|+|++++|+..
T Consensus       351 ~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          351 IQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             CCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             eeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence            4444433333444 6999999999766554   789999986432  3344543   56678899999999988754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=4.6e-23  Score=188.98  Aligned_cols=245  Identities=11%  Similarity=0.114  Sum_probs=180.9

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCcE-EEEecccccCeeeEEECCCCCEEEEEeCCC---cEEEEe
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSE-DATIRLWDYETGEY-ERALHGHLDSVQDIAFDQSGKLLVSCSADM---SLKLWD  176 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~-dg~v~vwd~~~~~~-~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~---~i~vwd  176 (406)
                      +..+..++ +++|+|+++++++++. ++.|.+||..+++. ...+..+..+..+++|+|+|++|+++..++   .|.+||
T Consensus        36 ~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d  114 (331)
T 3u4y_A           36 ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYS  114 (331)
T ss_dssp             EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEE
T ss_pred             EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEE
Confidence            34455566 9999999996666555 89999999999987 777777777776699999999999555553   899999


Q ss_pred             CCCCeEEEEEecCCcceEEEEEecCCCEEEE-EeCCCc-EEEEEcCCCeEE----EEeecCCccEEEEEECCCCCEE-EE
Q psy226          177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLS-ASRDKT-IKMWEVATGYCV----KTLTGHREWVRQIKVSPDGTLL-AS  249 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s-~s~d~~-i~iwd~~~~~~~----~~~~~~~~~v~~l~~~~~~~~l-~s  249 (406)
                      +.+++.+..+..+ ....+++|+|+|+++++ ...++. |.+|++.....+    ............++|+|+|+++ ++
T Consensus       115 ~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  193 (331)
T 3u4y_A          115 FLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA  193 (331)
T ss_dssp             TTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE
T ss_pred             CCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE
Confidence            9999888777654 45689999999985554 456688 999998753322    1122334557899999999965 45


Q ss_pred             EeCCCeEEEEeCCCccc---eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEE-eCCCcEEEEECCCCe
Q psy226          250 CSNDHTARVWSLATKET---KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATG-SRDKTIKLWDVGSGS  325 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~lwd~~~~~  325 (406)
                      +..++.|++||+.+++.   +..+..+ ..+..++|+|                  +|.+++++ ..++.|.+||+.+++
T Consensus       194 ~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~sp------------------dg~~l~v~~~~~~~i~~~d~~~~~  254 (331)
T 3u4y_A          194 NLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSR------------------DGSTVYVLTESTVDVFNFNQLSGT  254 (331)
T ss_dssp             ETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECT------------------TSSEEEEECSSEEEEEEEETTTTE
T ss_pred             eCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECC------------------CCCEEEEEEcCCCEEEEEECCCCc
Confidence            55789999999988877   5555543 4456777877                  46655554 457889999999988


Q ss_pred             E--EEEEeCC----CcC---EEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc
Q psy226          326 L--LFTLIGH----DNW---VRGVTFHPGGKYLVSCG-DDKTLRVWDTANKR  367 (406)
Q Consensus       326 ~--~~~~~~h----~~~---v~~l~~s~~g~~l~sgs-~d~~i~vwd~~~~~  367 (406)
                      .  +..+..+    ...   ...++|+|+|++|++++ .++.|.+||+....
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          255 LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             eeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            7  4444332    222   24589999999886555 56799999997654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.93  E-value=1.3e-24  Score=220.59  Aligned_cols=272  Identities=11%  Similarity=0.101  Sum_probs=201.3

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEeccccc---CeeeEEECCCCCEEEEEeC---------CCcEEEEeCC
Q psy226          111 KVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLD---SVQDIAFDQSGKLLVSCSA---------DMSLKLWDMS  178 (406)
Q Consensus       111 ~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~---~V~~l~~~~~g~~l~sgs~---------d~~i~vwd~~  178 (406)
                      .++|+|++.+++++ .|++|++||..+++....+.+|..   .|.+++|+|||++|++++.         |+.|++||+.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            56899999665554 699999999999998877776654   4999999999999998876         7899999999


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe-ec--------CCccE---------EEEEE
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL-TG--------HREWV---------RQIKV  240 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~--------~~~~v---------~~l~~  240 (406)
                      +++.+... .....+..++|+|||+.|+.++ |+.|++||+.++...... .+        +..+|         ..++|
T Consensus        99 ~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w  176 (719)
T 1z68_A           99 NGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW  176 (719)
T ss_dssp             TTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred             CCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence            88762101 1124688899999999999885 789999999888765432 22        22222         48999


Q ss_pred             CCCCCEEEEEeCCC----------------------------------eEEEEeCCCccce--------eEEecCCceEE
Q psy226          241 SPDGTLLASCSNDH----------------------------------TARVWSLATKETK--------AELRGHDHTVE  278 (406)
Q Consensus       241 ~~~~~~l~s~~~d~----------------------------------~v~vwd~~~~~~~--------~~~~~~~~~v~  278 (406)
                      +|||+.|++++.|.                                  .|++||+.++...        ..+.+|...+.
T Consensus       177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (719)
T 1z68_A          177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS  256 (719)
T ss_dssp             CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred             CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence            99999999988652                                  7889999887642        12346888899


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC----cEEEEE----CCCCeEEEEE----eCCCcCEE-----EEE
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK----TIKLWD----VGSGSLLFTL----IGHDNWVR-----GVT  341 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~lwd----~~~~~~~~~~----~~h~~~v~-----~l~  341 (406)
                      .++|+|+                  +.++++....+    .|.+||    +.++++...+    .+|..++.     .+.
T Consensus       257 ~~~~SpD------------------~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (719)
T 1z68_A          257 WLTWVTD------------------ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPV  318 (719)
T ss_dssp             EEEESSS------------------SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCE
T ss_pred             EeEEeCC------------------CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccE
Confidence            9999984                  45566644332    488999    8777655444    46777776     889


Q ss_pred             EcCCCCEEEE--EeCCC--eEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCC-----CeEEEeec
Q psy226          342 FHPGGKYLVS--CGDDK--TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVD-----KTVKVWEC  405 (406)
Q Consensus       342 ~s~~g~~l~s--gs~d~--~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~D-----g~v~iw~~  405 (406)
                      |+|+|+.|+.  ...+|  .|++||+.+++ ...+..+...+..+.+. ++..|+..+.+     +.+++|.+
T Consensus       319 ~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~  389 (719)
T 1z68_A          319 FSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI  389 (719)
T ss_dssp             ECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             ECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence            9999996543  44555  57777877665 45565555567777777 77777666554     88899874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=1.4e-23  Score=199.84  Aligned_cols=199  Identities=14%  Similarity=0.122  Sum_probs=156.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC-----------cEEE----EecccccCeeeEEECCCCCEEE----EE
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETG-----------EYER----ALHGHLDSVQDIAFDQSGKLLV----SC  166 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~-----------~~~~----~~~~h~~~V~~l~~~~~g~~l~----sg  166 (406)
                      ...++.+++++++.++++|+.|+ ++||+....           ....    ....|...|.+++|+|+|++|+    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34588999999999999999998 999874321           1110    0113556799999999999999    78


Q ss_pred             eCCCcEEEEeCCCC--------e---EEEEEecCCcceEEEEEecC-CCEEEEEeCCCcEEEEEcCCCeEEEEeecCCcc
Q psy226          167 SADMSLKLWDMSTY--------Q---CLKTMQGHDHNVTGVAFLPN-SDFVLSASRDKTIKMWEVATGYCVKTLTGHREW  234 (406)
Q Consensus       167 s~d~~i~vwd~~~~--------~---~~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~  234 (406)
                      +.|++|++||+.++        +   .+..+.+|...|.+++|+|+ +++|++++.|++|++||++++..+....+|...
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            89999999998654        1   24566789999999999998 789999999999999999999877777889999


Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecC-------CceEEEEEeCCCCCccccccccCCCCCCCCCCEE
Q psy226          235 VRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH-------DHTVECVAWAPGVASESISEAAGRPPGQGGGPYL  307 (406)
Q Consensus       235 v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  307 (406)
                      |.+++|+|+|++|++|+.||+|++||++ ......+..|       ...+.++.|.+.                  +.++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~------------------~~~l  255 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT------------------YVFA  255 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET------------------TEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC------------------ceEE
Confidence            9999999999999999999999999998 4444444433       337889999873                  3344


Q ss_pred             EE-EeCCC------cEEEEECCCC
Q psy226          308 AT-GSRDK------TIKLWDVGSG  324 (406)
Q Consensus       308 ~s-~~~d~------~i~lwd~~~~  324 (406)
                      ++ ++.||      .+++|+++..
T Consensus       256 ~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          256 IVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEccCCCccCCCCceEEEEeccC
Confidence            33 34443      3899999754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=7.6e-23  Score=188.95  Aligned_cols=237  Identities=12%  Similarity=0.101  Sum_probs=191.0

Q ss_pred             ccCeeeEEECCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEE-EEeCCCcEEEEEc
Q psy226          148 LDSVQDIAFDQSGKLLVSCSA-------DMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVL-SASRDKTIKMWEV  219 (406)
Q Consensus       148 ~~~V~~l~~~~~g~~l~sgs~-------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~i~iwd~  219 (406)
                      ...+..++|+|+|+++++++.       ++.|.+||..+++.+..+... ..+.+++|+|++++++ +...++.|.+||.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            456789999999999888874       568999999999888777643 4577899999999655 4555799999999


Q ss_pred             CCCeEEEEeecCCcc---------EEEEEECCCCCEEEEEe--CCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCc
Q psy226          220 ATGYCVKTLTGHREW---------VRQIKVSPDGTLLASCS--NDHTARVWSLATKETKAELRGHDHTVECVAWAPGVAS  288 (406)
Q Consensus       220 ~~~~~~~~~~~~~~~---------v~~l~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  288 (406)
                      .++..+..+..+...         +..++|+|+|+++++++  .++.|.+||+.+.+....+..+...+..++|+|    
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~----  194 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS----  194 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET----
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC----
Confidence            999988887765422         68899999999877766  488999999998887777764555566777776    


Q ss_pred             cccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC----CCcCEEEEEEcCCCCEEEEEeC-CCeEEEEeC
Q psy226          289 ESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG----HDNWVRGVTFHPGGKYLVSCGD-DKTLRVWDT  363 (406)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~----h~~~v~~l~~s~~g~~l~sgs~-d~~i~vwd~  363 (406)
                                    ++.++++++.++.|.+||+.+++.+..+..    +...+.+++|+|+|+++++++. ++.|.+||.
T Consensus       195 --------------dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~  260 (353)
T 3vgz_A          195 --------------EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT  260 (353)
T ss_dssp             --------------TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred             --------------CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence                          467888899999999999999998877664    5567889999999998776664 599999999


Q ss_pred             CCCccceeeccccceEEEEEEeCCCCEEE-EeeCCCeEEEeec
Q psy226          364 ANKRNMKTLEAHSHFVTSLDFHRAHPYVV-TGSVDKTVKVWEC  405 (406)
Q Consensus       364 ~~~~~~~~l~~h~~~v~~l~~~~~~~~l~-sgs~Dg~v~iw~~  405 (406)
                      .+++.+..+.....  ..++|+|++++++ ++..++.|.+||.
T Consensus       261 ~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          261 RNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             TTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence            99988877765432  5789999999654 4557999999996

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=1.6e-22  Score=187.96  Aligned_cols=259  Identities=12%  Similarity=0.192  Sum_probs=181.9

Q ss_pred             CCCcEEEEEc--CCCcEEEEecccccCeeeEEECCCCCEEEEEeCC----CcEEEEeCCC--Ce--EEEEEecCCcceEE
Q psy226          126 EDATIRLWDY--ETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD----MSLKLWDMST--YQ--CLKTMQGHDHNVTG  195 (406)
Q Consensus       126 ~dg~v~vwd~--~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d----~~i~vwd~~~--~~--~~~~~~~h~~~v~~  195 (406)
                      .++.|.+|++  .++++......+...+..++|+|+|++|++++.+    +.|.+|++..  ++  .+.....+......
T Consensus        25 ~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~  104 (361)
T 3scy_A           25 NSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCY  104 (361)
T ss_dssp             SCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEE
T ss_pred             CCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEE
Confidence            4678999966  5666544333377788899999999999999886    7999998764  43  33344445556777


Q ss_pred             EEEecCCCEEEEEe-CCCcEEEEEcCCCeEEEE------eec--------CCccEEEEEECCCCCEEEEEe-CCCeEEEE
Q psy226          196 VAFLPNSDFVLSAS-RDKTIKMWEVATGYCVKT------LTG--------HREWVRQIKVSPDGTLLASCS-NDHTARVW  259 (406)
Q Consensus       196 ~~~~p~~~~l~s~s-~d~~i~iwd~~~~~~~~~------~~~--------~~~~v~~l~~~~~~~~l~s~~-~d~~v~vw  259 (406)
                      +++  ++++|++++ .+++|.+|++.....+..      ..+        +...+.+++|+|+|+++++++ .++.|++|
T Consensus       105 ~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~  182 (361)
T 3scy_A          105 LTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKF  182 (361)
T ss_dssp             EEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEE
Confidence            777  788777766 578999999975332211      111        122357899999999665555 58999999


Q ss_pred             eCCCccc------e-------eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe-CCCcEEEEECCCCe
Q psy226          260 SLATKET------K-------AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS-RDKTIKLWDVGSGS  325 (406)
Q Consensus       260 d~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~lwd~~~~~  325 (406)
                      ++.....      +       .....+...+..++|+|                  +|.++++++ .++.|.+||+.++.
T Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp------------------dg~~l~v~~~~~~~v~v~~~~~g~  244 (361)
T 3scy_A          183 NINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS------------------DGKFAYLINEIGGTVIAFRYADGM  244 (361)
T ss_dssp             EECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT------------------TSSEEEEEETTTCEEEEEEEETTE
T ss_pred             EEcCCCCcccccceeecccccceecCCCCCCeEEEEcC------------------CCCEEEEEcCCCCeEEEEEecCCc
Confidence            9875432      1       11223344567888888                  466676666 68999999998775


Q ss_pred             E--EEEEe---CCCcCEEEEEEcCCCCEEEEEeC--CCeEEEEeCC--CCc--cceeeccccceEEEEEEeCCCCEEEEe
Q psy226          326 L--LFTLI---GHDNWVRGVTFHPGGKYLVSCGD--DKTLRVWDTA--NKR--NMKTLEAHSHFVTSLDFHRAHPYVVTG  394 (406)
Q Consensus       326 ~--~~~~~---~h~~~v~~l~~s~~g~~l~sgs~--d~~i~vwd~~--~~~--~~~~l~~h~~~v~~l~~~~~~~~l~sg  394 (406)
                      .  +..+.   .+......++|+|+|++|+++..  ++.|.+|++.  +++  .+..+.. ...+.+++|+|++++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~  323 (361)
T 3scy_A          245 LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVA  323 (361)
T ss_dssp             EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEE
T ss_pred             eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEE
Confidence            4  22332   33455789999999999876665  4899999985  343  3444443 4467899999999988887


Q ss_pred             e-CCCeEEEeec
Q psy226          395 S-VDKTVKVWEC  405 (406)
Q Consensus       395 s-~Dg~v~iw~~  405 (406)
                      + .++.|.+|++
T Consensus       324 ~~~~~~v~v~~~  335 (361)
T 3scy_A          324 CRDTNVIQIFER  335 (361)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            7 6799999754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=4.3e-23  Score=189.12  Aligned_cols=244  Identities=14%  Similarity=0.115  Sum_probs=191.2

Q ss_pred             CeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEecc-c----ccCeeeEEECCCCCEEEEEe------------CC
Q psy226          108 PVIKVIFHPVFSLM-ASCSEDATIRLWDYETGEYERALHG-H----LDSVQDIAFDQSGKLLVSCS------------AD  169 (406)
Q Consensus       108 ~V~~v~~~p~~~~l-atgs~dg~v~vwd~~~~~~~~~~~~-h----~~~V~~l~~~~~g~~l~sgs------------~d  169 (406)
                      .+..++|+|+++.+ ++++.++.|.+||..+++....+.. +    ...+.+++|+|+|++|++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            47789999999765 5666789999999999988776653 2    23688999999999998886            57


Q ss_pred             CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEE
Q psy226          170 MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLAS  249 (406)
Q Consensus       170 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  249 (406)
                      +.|.+||+.+++....+.. ...+.+++|+|++++|+++  ++.|.+||+.++.....+..+.. ...+.|+|+|..++.
T Consensus       115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~  190 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWN  190 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEee
Confidence            9999999999888777664 4467889999999988887  68899999999988877765431 112368999886655


Q ss_pred             EeC-CC-----------------------eEEEEeCCCccce-eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCC
Q psy226          250 CSN-DH-----------------------TARVWSLATKETK-AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGG  304 (406)
Q Consensus       250 ~~~-d~-----------------------~v~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (406)
                      .+. ++                       .|.+||+.+.+.. ..+..+...+..++|+|                  ++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~------------------dg  252 (337)
T 1pby_B          191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP------------------AK  252 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT------------------TS
T ss_pred             eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC------------------CC
Confidence            443 22                       4689999887653 23344556677888888                  46


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecccc
Q psy226          305 PYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS  376 (406)
Q Consensus       305 ~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~  376 (406)
                      .+++++  ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|++||+.+++.+..+..+.
T Consensus       253 ~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~  321 (337)
T 1pby_B          253 TRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             SEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             CEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence            677777  789999999999888776643 457899999999999999999999999999998888776543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=1.6e-22  Score=186.90  Aligned_cols=247  Identities=12%  Similarity=0.163  Sum_probs=177.3

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcCCCcE--EEEecccccCeeeEEECCCCCEEEEEe-CCCcEEEEe
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSE---DATIRLWDYETGEY--ERALHGHLDSVQDIAFDQSGKLLVSCS-ADMSLKLWD  176 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~---dg~v~vwd~~~~~~--~~~~~~h~~~V~~l~~~~~g~~l~sgs-~d~~i~vwd  176 (406)
                      ..+...+..++|+|+++ |++++.   ++.|++||+.+++.  ...+..+...+..++|+|+|++|++++ .++.|.+|+
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence            34556778899999999 554443   68999999987763  334455778899999999999998888 679999999


Q ss_pred             CC-CC--eEEEEEecC---------CcceEEEEEecCCCEEEEEeCCCcEEEEEcC-CCeEEE--EeecC-CccEEEEEE
Q psy226          177 MS-TY--QCLKTMQGH---------DHNVTGVAFLPNSDFVLSASRDKTIKMWEVA-TGYCVK--TLTGH-REWVRQIKV  240 (406)
Q Consensus       177 ~~-~~--~~~~~~~~h---------~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~-~~~~~~--~~~~~-~~~v~~l~~  240 (406)
                      +. ++  ..+..+...         ...+.+++|+|+++++++...++.|.+||+. ++....  .+..+ ...+..++|
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            96 22  333333221         2248889999999966666678899999998 554322  22222 235778999


Q ss_pred             CCCCCEEEE-EeCCCeEEEEeCCC--ccc--eeEEecCC------ceEEEEEeCCCCCccccccccCCCCCCCCCCEE-E
Q psy226          241 SPDGTLLAS-CSNDHTARVWSLAT--KET--KAELRGHD------HTVECVAWAPGVASESISEAAGRPPGQGGGPYL-A  308 (406)
Q Consensus       241 ~~~~~~l~s-~~~d~~v~vwd~~~--~~~--~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~  308 (406)
                      +|+|+++++ +..++.+.+|++..  +..  ...+....      ..+..++|+|                  +|.+| +
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp------------------dG~~l~v  256 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH------------------DGHFLYV  256 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT------------------TSCEEEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC------------------CCCEEEE
Confidence            999996655 56789999999874  321  22222222      3477788887                  46666 5


Q ss_pred             EEeCCCcEEEEECCC---CeEEEEEeCCCcCEEEEEEcCCCCEEEEEeC-CCeEEEE--eCCCCcc
Q psy226          309 TGSRDKTIKLWDVGS---GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD-DKTLRVW--DTANKRN  368 (406)
Q Consensus       309 s~~~d~~i~lwd~~~---~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~-d~~i~vw--d~~~~~~  368 (406)
                      ++..++.|.+||+..   ...+..+..+...+..++|+|+|++|++++. ++.|.+|  |..+++.
T Consensus       257 ~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          257 SNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             EEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            666789999999872   2555666677777899999999999888775 4899999  5455554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.92  E-value=4.4e-23  Score=193.34  Aligned_cols=286  Identities=14%  Similarity=0.098  Sum_probs=204.2

Q ss_pred             eEEeccCCCCeEE-----EEEcCCCCEEEEEeC-CCc--EEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCC
Q psy226           99 KFALSGHRSPVIK-----VIFHPVFSLMASCSE-DAT--IRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADM  170 (406)
Q Consensus        99 ~~~l~~h~~~V~~-----v~~~p~~~~latgs~-dg~--v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~  170 (406)
                      ...+..|......     .+|+||++.|+.++. +|.  |.+||..+++......++...+.++.|+|+|+.|+.++.++
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~  102 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR  102 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence            3455666655555     789999999998887 674  88889999988877777777777889999999999999999


Q ss_pred             cEEEEeCCCCeEEEEEecCCcceEEEE--EecCCCEEEEE----------------------eCCCcEEEEEcCCCeEEE
Q psy226          171 SLKLWDMSTYQCLKTMQGHDHNVTGVA--FLPNSDFVLSA----------------------SRDKTIKMWEVATGYCVK  226 (406)
Q Consensus       171 ~i~vwd~~~~~~~~~~~~h~~~v~~~~--~~p~~~~l~s~----------------------s~d~~i~iwd~~~~~~~~  226 (406)
                      .|++||+.+++.......+...+....  ++|++.+++..                      +.+..|.+||+.++... 
T Consensus       103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-  181 (388)
T 3pe7_A          103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-  181 (388)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-
T ss_pred             eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-
Confidence            999999999887766666665554444  48899887742                      24468999999988654 


Q ss_pred             EeecCCccEEEEEECC-CCCEEEEEeCC------CeEEEEeCCCccceeEEecCC--ceEEEEEeCCCCCccccccccCC
Q psy226          227 TLTGHREWVRQIKVSP-DGTLLASCSND------HTARVWSLATKETKAELRGHD--HTVECVAWAPGVASESISEAAGR  297 (406)
Q Consensus       227 ~~~~~~~~v~~l~~~~-~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~  297 (406)
                      .+..+...+..+.|+| +|+.|+.++.+      ..|.++|....... .+..+.  ..+....|+|+            
T Consensus       182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spd------------  248 (388)
T 3pe7_A          182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPD------------  248 (388)
T ss_dssp             EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTT------------
T ss_pred             EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCC------------
Confidence            4446677889999999 99999887764      37788887655433 333333  35777889884            


Q ss_pred             CCCCCCCCEEEEEeC-CC----cEEEEECCCCeE--EEEEeCCCcC---EEEEEEcCCCCEEEEE---------eCCCeE
Q psy226          298 PPGQGGGPYLATGSR-DK----TIKLWDVGSGSL--LFTLIGHDNW---VRGVTFHPGGKYLVSC---------GDDKTL  358 (406)
Q Consensus       298 ~~~~~~~~~l~s~~~-d~----~i~lwd~~~~~~--~~~~~~h~~~---v~~l~~s~~g~~l~sg---------s~d~~i  358 (406)
                            |..|+..+. ++    .|.+||+.+++.  +..+.++...   ...++|+|+|+.|+..         ..+..|
T Consensus       249 ------g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i  322 (388)
T 3pe7_A          249 ------GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL  322 (388)
T ss_dssp             ------SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred             ------CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence                  554544332 22    399999998874  3333331111   1123799999988753         456799


Q ss_pred             EEEeCCCCccceeeccccc-----------eEEEEEEeCCCCEEEEee-CCCeEEEeec
Q psy226          359 RVWDTANKRNMKTLEAHSH-----------FVTSLDFHRAHPYVVTGS-VDKTVKVWEC  405 (406)
Q Consensus       359 ~vwd~~~~~~~~~l~~h~~-----------~v~~l~~~~~~~~l~sgs-~Dg~v~iw~~  405 (406)
                      ++||+.+++. ..+..+..           .+.+++|+|+++.|+..+ .+|...||.+
T Consensus       323 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          323 YVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             EEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            9999988654 45555544           477889999999887655 5777777753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=5.4e-23  Score=195.75  Aligned_cols=212  Identities=16%  Similarity=0.145  Sum_probs=166.3

Q ss_pred             CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC-----------eEEE----EEecCCcc
Q psy226          128 ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY-----------QCLK----TMQGHDHN  192 (406)
Q Consensus       128 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~-----------~~~~----~~~~h~~~  192 (406)
                      +.+++|+....       .+...++.+++++++.++++++.|+ +++|+....           ....    ....+...
T Consensus        23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            46788764321       1345688999999999999999988 888874210           1100    11235667


Q ss_pred             eEEEEEecCCCEEE----EEeCCCcEEEEEcCCC--------e---EEEEeecCCccEEEEEECCC-CCEEEEEeCCCeE
Q psy226          193 VTGVAFLPNSDFVL----SASRDKTIKMWEVATG--------Y---CVKTLTGHREWVRQIKVSPD-GTLLASCSNDHTA  256 (406)
Q Consensus       193 v~~~~~~p~~~~l~----s~s~d~~i~iwd~~~~--------~---~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~d~~v  256 (406)
                      |.+++|+|++++|+    +|+.|++|++||+.++        .   .+..+.+|...|.+++|+|+ +.+|++++.||+|
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            99999999999999    7889999999998765        1   24566789999999999998 8999999999999


Q ss_pred             EEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC--
Q psy226          257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD--  334 (406)
Q Consensus       257 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~--  334 (406)
                      ++||+++........+|...|.+++|+|                  +|.+|++|+.||.|++||++ +.....+..|.  
T Consensus       175 ~iwD~~~~~~~~~~~~~~~~v~~v~wsp------------------dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~  235 (434)
T 2oit_A          175 AVLQVTETVKVCATLPSTVAVTSVCWSP------------------KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY  235 (434)
T ss_dssp             EEEEESSSEEEEEEECGGGCEEEEEECT------------------TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTC
T ss_pred             EEEEcCCCcceeeccCCCCceeEEEEcC------------------CCCEEEEEcCCCcEEEEccC-CcccccccCCccc
Confidence            9999998866666778899999999998                  47789999999999999998 66666655442  


Q ss_pred             -----cCEEEEEEcCCCCEEEEE-eCCC------eEEEEeCCCC
Q psy226          335 -----NWVRGVTFHPGGKYLVSC-GDDK------TLRVWDTANK  366 (406)
Q Consensus       335 -----~~v~~l~~s~~g~~l~sg-s~d~------~i~vwd~~~~  366 (406)
                           ..|.+++|++++.++++. +.||      .+++|++...
T Consensus       236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence                 379999999999888653 3443      3899998754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=2.7e-21  Score=179.64  Aligned_cols=260  Identities=14%  Similarity=0.187  Sum_probs=180.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEcCC--CcEEE--EecccccCeeeEEECCCCCEEEEEe-CCCcEEEE
Q psy226          105 HRSPVIKVIFHPVFSLMASCSED----ATIRLWDYET--GEYER--ALHGHLDSVQDIAFDQSGKLLVSCS-ADMSLKLW  175 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~d----g~v~vwd~~~--~~~~~--~~~~h~~~V~~l~~~~~g~~l~sgs-~d~~i~vw  175 (406)
                      |...+..++|+|++++|++++.+    +.|.+|++..  +++..  ....+......+++  +|++|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            66677889999999999999886    8999998765  54432  33334556777888  788777776 57899999


Q ss_pred             eCCCCeEEEE------Eec--------CCcceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCeE-------------EEE
Q psy226          176 DMSTYQCLKT------MQG--------HDHNVTGVAFLPNSDFVLSAS-RDKTIKMWEVATGYC-------------VKT  227 (406)
Q Consensus       176 d~~~~~~~~~------~~~--------h~~~v~~~~~~p~~~~l~s~s-~d~~i~iwd~~~~~~-------------~~~  227 (406)
                      ++.....+..      ..+        +...+.+++|+|+++++++++ .++.|.+|++.....             ...
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            9874322211      111        122357899999999766555 588999998875331             111


Q ss_pred             eecCCccEEEEEECCCCCEEEEEe-CCCeEEEEeCCCccc--eeEEe---cCCceEEEEEeCCCCCccccccccCCCCCC
Q psy226          228 LTGHREWVRQIKVSPDGTLLASCS-NDHTARVWSLATKET--KAELR---GHDHTVECVAWAPGVASESISEAAGRPPGQ  301 (406)
Q Consensus       228 ~~~~~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~~--~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  301 (406)
                      ...+......++|+|+|+++++++ .++.|.+|++.++..  ...+.   .+......++|+|                 
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp-----------------  268 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP-----------------  268 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT-----------------
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC-----------------
Confidence            223345578899999999887776 699999999986533  22222   2234456888887                 


Q ss_pred             CCCCEEEEEeCC--CcEEEEECC--CCe--EEEEEeCCCcCEEEEEEcCCCCEEEEEe-CCCeEEEEe--CCCCccceee
Q psy226          302 GGGPYLATGSRD--KTIKLWDVG--SGS--LLFTLIGHDNWVRGVTFHPGGKYLVSCG-DDKTLRVWD--TANKRNMKTL  372 (406)
Q Consensus       302 ~~~~~l~s~~~d--~~i~lwd~~--~~~--~~~~~~~h~~~v~~l~~s~~g~~l~sgs-~d~~i~vwd--~~~~~~~~~l  372 (406)
                       +|++|+++..+  +.|.+|++.  ++.  .+..+.. ...+.+++|+|+|++|++++ .++.|.+|+  ..+++.....
T Consensus       269 -dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~  346 (361)
T 3scy_A          269 -DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK  346 (361)
T ss_dssp             -TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred             -CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence             47777666654  899999985  454  3444444 55788999999999988887 679999964  4566544332


Q ss_pred             -ccccceEEEEEEe
Q psy226          373 -EAHSHFVTSLDFH  385 (406)
Q Consensus       373 -~~h~~~v~~l~~~  385 (406)
                       ..+...+.|+.|.
T Consensus       347 ~~~~~~~p~~v~~~  360 (361)
T 3scy_A          347 KDIKVDKPVCLKFV  360 (361)
T ss_dssp             CCEECSSEEEEEEE
T ss_pred             eeeeCCCCeEEEEc
Confidence             2244568898885

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.90  E-value=1.7e-21  Score=181.47  Aligned_cols=266  Identities=12%  Similarity=0.103  Sum_probs=184.4

Q ss_pred             EEEEeCC--CcEEEEEc--CCCcEEEEec---ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEecC-Cc
Q psy226          121 MASCSED--ATIRLWDY--ETGEYERALH---GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS-TYQCLKTMQGH-DH  191 (406)
Q Consensus       121 latgs~d--g~v~vwd~--~~~~~~~~~~---~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~-~~~~~~~~~~h-~~  191 (406)
                      ++.|+..  +.|.+|++  .++++...-.   ++...+..++|+|+|++|++++.+ .|.+|++. +++........ ..
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g   83 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence            4555553  56887764  5665533211   234568899999999999999888 99999997 77664432211 12


Q ss_pred             ceEEEEEecCCCE--EEEEe-------------CCCcEEEEEcC-CCeEEEEee----cCCccEEEEEECCCCCEEEEEe
Q psy226          192 NVTGVAFLPNSDF--VLSAS-------------RDKTIKMWEVA-TGYCVKTLT----GHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       192 ~v~~~~~~p~~~~--l~s~s-------------~d~~i~iwd~~-~~~~~~~~~----~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                      ...+++|+|+|++  +++++             .++++.+|++. ++.....+.    .+...+..++|+|+|++++++.
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            3456889999994  45553             68999999997 465544443    2456789999999999888766


Q ss_pred             C-CCeEEEEeCC-Cccce--eEEe--cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC-CCcEEEEECC--
Q psy226          252 N-DHTARVWSLA-TKETK--AELR--GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR-DKTIKLWDVG--  322 (406)
Q Consensus       252 ~-d~~v~vwd~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~lwd~~--  322 (406)
                      . ++.|++||+. +++..  ..+.  .|...+..++|+|                  +|.++++++. ++.|.+|++.  
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp------------------dg~~l~v~~~~~~~v~v~~~~~~  225 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP------------------TGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT------------------TSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC------------------CCCEEEEEECCCCeEEEEEEeCC
Confidence            4 6899999997 55432  2232  2355688889988                  4677777764 6899999764  


Q ss_pred             CCeEEE---EEe-------CCCc------CEEEEE-EcCCCCEEEEEeCC-C-----eEEEEeCC-CCccce---eeccc
Q psy226          323 SGSLLF---TLI-------GHDN------WVRGVT-FHPGGKYLVSCGDD-K-----TLRVWDTA-NKRNMK---TLEAH  375 (406)
Q Consensus       323 ~~~~~~---~~~-------~h~~------~v~~l~-~s~~g~~l~sgs~d-~-----~i~vwd~~-~~~~~~---~l~~h  375 (406)
                      +++...   .+.       +|..      .+..++ |+|+|++|++++.+ .     +|.+|++. +++...   .+..+
T Consensus       226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~  305 (365)
T 1jof_A          226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC
Confidence            565432   221       1222      588999 99999998876543 2     89999986 555432   13334


Q ss_pred             cceEEEEEEeC---CCCEEEEeeCC-CeEEEeec
Q psy226          376 SHFVTSLDFHR---AHPYVVTGSVD-KTVKVWEC  405 (406)
Q Consensus       376 ~~~v~~l~~~~---~~~~l~sgs~D-g~v~iw~~  405 (406)
                      ...+..++|+|   ++++|++++.+ +.|.+|+.
T Consensus       306 ~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            44567889999   89999988764 89999985

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=5.6e-23  Score=203.41  Aligned_cols=230  Identities=13%  Similarity=0.084  Sum_probs=175.2

Q ss_pred             ccCeeeEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEEecCC-cceEEEEEecCCCEEEEEeC---CCcEEEEEcCC-
Q psy226          148 LDSVQDIAFDQSGKLLVSCSA-DMSLKLWDMSTYQCLKTMQGHD-HNVTGVAFLPNSDFVLSASR---DKTIKMWEVAT-  221 (406)
Q Consensus       148 ~~~V~~l~~~~~g~~l~sgs~-d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~---d~~i~iwd~~~-  221 (406)
                      ..+|.+++|+|||+.|++++. ||+++||++.+++.. .+..|. ..+.+++|+|+ +.+++++.   +...++|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            457999999999999999887 999999999776654 444444 68999999999 77777765   55566765533 


Q ss_pred             --CeEEEEeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCC
Q psy226          222 --GYCVKTLTGHREWVRQIKVSPDGT--LLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGR  297 (406)
Q Consensus       222 --~~~~~~~~~~~~~v~~l~~~~~~~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  297 (406)
                        +... .+.... .+...+|+|+|+  .+++++.|+ +.+||+.+++.......+.   .+++|+|             
T Consensus        99 ~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~sp-------------  159 (582)
T 3o4h_A           99 RPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSDI-------------  159 (582)
T ss_dssp             STTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEEE-------------
T ss_pred             CCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEECC-------------
Confidence              2222 333222 233557777775  445555554 5599998876554443333   6777877             


Q ss_pred             CCCCCCCCEEEEEeCC----CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCcccee
Q psy226          298 PPGQGGGPYLATGSRD----KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK--TLRVWDTANKRNMKT  371 (406)
Q Consensus       298 ~~~~~~~~~l~s~~~d----~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~--~i~vwd~~~~~~~~~  371 (406)
                           +|.++++++.|    +.|++||+.+++.. .+.+|...+..++|||||++|++++.++  .|++||+.+++.. .
T Consensus       160 -----DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~  232 (582)
T 3o4h_A          160 -----RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D  232 (582)
T ss_dssp             -----ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred             -----CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence                 57889988877    78999999888754 6778888899999999999999888888  9999999988776 6


Q ss_pred             eccccceEEEEE--------EeCCCCEEEEeeCCCeEEEeec
Q psy226          372 LEAHSHFVTSLD--------FHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       372 l~~h~~~v~~l~--------~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +..|...+..++        |+|+|.++++++.||++++|++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          233 LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            677766666667        9999999999999999999974

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.89  E-value=3.4e-22  Score=203.25  Aligned_cols=265  Identities=16%  Similarity=0.197  Sum_probs=187.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccC-----eeeEEECCCCCEEEEEeCC---------CcEE
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDS-----VQDIAFDQSGKLLVSCSAD---------MSLK  173 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~-----V~~l~~~~~g~~l~sgs~d---------~~i~  173 (406)
                      ....+.|+|++.+++++  ||+|++||+.+++....+.+|...     ..++.|||||++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            35578999999999987  999999999999988888887643     2448899999999998876         5567


Q ss_pred             EEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEE-eecC--------CccE---------
Q psy226          174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKT-LTGH--------REWV---------  235 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~--------~~~v---------  235 (406)
                      +||+.++++. .+..|...+...+|+|||+.|+.++ |+.|++||+.++...+. ..++        .++|         
T Consensus        96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence            9999998754 4666778899999999999998874 68999999988765432 1222        2222         


Q ss_pred             EEEEECCCCCEEEEEeCCC------------------------------------eEEEEeCCC---cc--ceeEEe---
Q psy226          236 RQIKVSPDGTLLASCSNDH------------------------------------TARVWSLAT---KE--TKAELR---  271 (406)
Q Consensus       236 ~~l~~~~~~~~l~s~~~d~------------------------------------~v~vwd~~~---~~--~~~~~~---  271 (406)
                      ..+.|||||+.||.++.|.                                    .|++||+.+   +.  ....+.   
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~  253 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA  253 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred             cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence            3489999999999876332                                    478888887   62  222333   


Q ss_pred             ---cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC----CCcEEEEECCCCe----EE--EEE--eCCCcC
Q psy226          272 ---GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR----DKTIKLWDVGSGS----LL--FTL--IGHDNW  336 (406)
Q Consensus       272 ---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~lwd~~~~~----~~--~~~--~~h~~~  336 (406)
                         +|...+..++|+|+                  |..++....    +..|++||+.+++    +.  ..+  .+|..+
T Consensus       254 ~~~~~~~~~~~~~wspd------------------g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~  315 (740)
T 4a5s_A          254 SMLIGDHYLCDVTWATQ------------------ERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGW  315 (740)
T ss_dssp             HHHTSCEEEEEEEEEET------------------TEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSC
T ss_pred             cCCCCCeEEEEEEEeCC------------------CeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCce
Confidence               37778889999984                  554444332    3369999998886    32  122  457766


Q ss_pred             EE-----EEEEcCCCCEEE-EEeCC---CeEEEEeCCCCccceeeccccceEEEEEEeCCCCEE-EEeeC
Q psy226          337 VR-----GVTFHPGGKYLV-SCGDD---KTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYV-VTGSV  396 (406)
Q Consensus       337 v~-----~l~~s~~g~~l~-sgs~d---~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l-~sgs~  396 (406)
                      |.     ..+|+|||+.|+ ..+.+   ..|++||..+++.. .+....-.|..+.+ +++..| ++++.
T Consensus       316 v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~  383 (740)
T 4a5s_A          316 VGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNE  383 (740)
T ss_dssp             SSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESC
T ss_pred             EccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEec
Confidence            65     789999999877 66643   46888998876544 34333334544432 335554 44443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=1.7e-22  Score=204.99  Aligned_cols=274  Identities=10%  Similarity=0.068  Sum_probs=192.9

Q ss_pred             CeEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCcEE--EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226          108 PVIKVIFHPVFSLMASCSE---------DATIRLWDYETGEYE--RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~---------dg~v~vwd~~~~~~~--~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      .|.+++|||||++||+++.         +++|++||+.+++..  ..+   ...+.+++|+|||+.|+.++ |+.|++||
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~  136 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ  136 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence            4899999999999998876         799999999998762  122   25689999999999999885 78999999


Q ss_pred             CCCCeEEEEE-ecCCcce-----------------EEEEEecCCCEEEEEeCCC--------------------------
Q psy226          177 MSTYQCLKTM-QGHDHNV-----------------TGVAFLPNSDFVLSASRDK--------------------------  212 (406)
Q Consensus       177 ~~~~~~~~~~-~~h~~~v-----------------~~~~~~p~~~~l~s~s~d~--------------------------  212 (406)
                      +.+++..... .++...|                 .+++|+|||++|++++.|.                          
T Consensus       137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~  216 (719)
T 1z68_A          137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK  216 (719)
T ss_dssp             STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred             CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence            9887765432 2332222                 4899999999999987652                          


Q ss_pred             --------cEEEEEcCCCeEE---E-----EeecCCccEEEEEECCCCCEEEEEeCC----CeEEEEe----CCCcccee
Q psy226          213 --------TIKMWEVATGYCV---K-----TLTGHREWVRQIKVSPDGTLLASCSND----HTARVWS----LATKETKA  268 (406)
Q Consensus       213 --------~i~iwd~~~~~~~---~-----~~~~~~~~v~~l~~~~~~~~l~s~~~d----~~v~vwd----~~~~~~~~  268 (406)
                              .|++||+.++...   .     .+.+|...+..++|+||++++++....    ..|.+||    +.+++...
T Consensus       217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~  296 (719)
T 1z68_A          217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK  296 (719)
T ss_dssp             TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred             CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence                    7889999887642   1     234688889999999998877775433    2488899    76665544


Q ss_pred             EE----ecCCceEE-----EEEeCCCCCccccccccCCCCCCCCCCEEE--EEeCCC--cEEEEECCCCeEEEEEeCCCc
Q psy226          269 EL----RGHDHTVE-----CVAWAPGVASESISEAAGRPPGQGGGPYLA--TGSRDK--TIKLWDVGSGSLLFTLIGHDN  335 (406)
Q Consensus       269 ~~----~~~~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--s~~~d~--~i~lwd~~~~~~~~~~~~h~~  335 (406)
                      .+    .+|...+.     .+.|+|+                  |..++  ++..++  .|.+||+.+++ ...+..+..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~spd------------------g~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~  357 (719)
T 1z68_A          297 TQEHIEESRTGWAGGFFVSTPVFSYD------------------AISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKW  357 (719)
T ss_dssp             GGEEEEECSSSCSSSSSCCCCEECTT------------------SSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSS
T ss_pred             EEecccccCCceEccccCCccEECCC------------------CCeEEEEEEccCCceEEEEEECCCCc-eEecccCce
Confidence            44    35555554     6677773                  44333  344555  57778887766 445555666


Q ss_pred             CEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCC--Cc-cceeec----cccceEEEEEEeCCCCEEEE-eeCC--CeE
Q psy226          336 WVRGVTFHPGGKYLVSCGDD-----KTLRVWDTAN--KR-NMKTLE----AHSHFVTSLDFHRAHPYVVT-GSVD--KTV  400 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs~d-----~~i~vwd~~~--~~-~~~~l~----~h~~~v~~l~~~~~~~~l~s-gs~D--g~v  400 (406)
                      .+..+.++ +++.|+..+.+     +.+++|.+..  +. ....+.    +|...+..+.|+|++++++. ++.+  ..+
T Consensus       358 ~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~  436 (719)
T 1z68_A          358 EAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPIS  436 (719)
T ss_dssp             CEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEE
T ss_pred             EEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeE
Confidence            67887777 77777666554     7888997653  32 123332    25566788999999987763 4433  356


Q ss_pred             EEeec
Q psy226          401 KVWEC  405 (406)
Q Consensus       401 ~iw~~  405 (406)
                      .+||.
T Consensus       437 ~l~d~  441 (719)
T 1z68_A          437 TLHDG  441 (719)
T ss_dssp             EEECS
T ss_pred             EEEEC
Confidence            77764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.89  E-value=3.3e-21  Score=193.55  Aligned_cols=282  Identities=14%  Similarity=0.104  Sum_probs=207.5

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEEcCCCcEEEEecccccCee---------eEEEC--CCCCE-EEEE
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASC--SEDATIRLWDYETGEYERALHGHLDSVQ---------DIAFD--QSGKL-LVSC  166 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latg--s~dg~v~vwd~~~~~~~~~~~~h~~~V~---------~l~~~--~~g~~-l~sg  166 (406)
                      .+.+|...|..++|+++.-++++.  +.++...||....+...+.+..|...+.         ...|+  |||+. |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            467899999999999987777777  6688999999654544566776766666         66665  99998 7765


Q ss_pred             eC-CCcEEEEeCC--C-CeEEEEEec-----CCcceEEEEEecCCCEEEEEeCC----------CcEEEEEcCC------
Q psy226          167 SA-DMSLKLWDMS--T-YQCLKTMQG-----HDHNVTGVAFLPNSDFVLSASRD----------KTIKMWEVAT------  221 (406)
Q Consensus       167 s~-d~~i~vwd~~--~-~~~~~~~~~-----h~~~v~~~~~~p~~~~l~s~s~d----------~~i~iwd~~~------  221 (406)
                      +. +..|.+|++.  + ++ ...+..     |...+.+++|+|+|+.|++++.|          ..|++||+.+      
T Consensus        98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence            54 4566666765  2 33 445555     66788999999999999988877          5899999987      


Q ss_pred             CeEEEEee-cCCccEEEEEECCCCCEEEEEeCC--------CeEEEEeCC-Cc---cceeEEecCCceEEEEEeCCCCCc
Q psy226          222 GYCVKTLT-GHREWVRQIKVSPDGTLLASCSND--------HTARVWSLA-TK---ETKAELRGHDHTVECVAWAPGVAS  288 (406)
Q Consensus       222 ~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d--------~~v~vwd~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~  288 (406)
                      +.. ..+. .+...+..++|+|||++|+.++.+        ..|++||+. ++   .......+|...+..+.|+|+   
T Consensus       177 ~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd---  252 (662)
T 3azo_A          177 SAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD---  252 (662)
T ss_dssp             GGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT---
T ss_pred             Cce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC---
Confidence            543 4555 666788889999999999988755        379999998 45   344444456778899999984   


Q ss_pred             cccccccCCCCCCCCCCEEEEEeCCC--cEEEEECCCCeEEEEEeCCCcC--------EEEEEEcCCCCEEEEEeCCCeE
Q psy226          289 ESISEAAGRPPGQGGGPYLATGSRDK--TIKLWDVGSGSLLFTLIGHDNW--------VRGVTFHPGGKYLVSCGDDKTL  358 (406)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~l~s~~~d~--~i~lwd~~~~~~~~~~~~h~~~--------v~~l~~s~~g~~l~sgs~d~~i  358 (406)
                                     |.+++++..++  .|.+||+.+++......++...        +..++|+|+++++++++. +.+
T Consensus       253 ---------------g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~  316 (662)
T 3azo_A          253 ---------------GSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA  316 (662)
T ss_dssp             ---------------SCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC
T ss_pred             ---------------CeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc
Confidence                           56778888888  6777777677654433333322        567899999999999998 999


Q ss_pred             EEE--eCCCCccceeeccccceEEEE-EEeCCCCEEEEeeCCCeEEEee
Q psy226          359 RVW--DTANKRNMKTLEAHSHFVTSL-DFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       359 ~vw--d~~~~~~~~~l~~h~~~v~~l-~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      +||  |..+++ ++.+..|...+..+ +++.+.-++++++.+....+|.
T Consensus       317 ~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          317 VLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             EEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             EEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence            999  555554 67777787778877 6665555566667776555554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.89  E-value=1.1e-20  Score=175.82  Aligned_cols=243  Identities=14%  Similarity=0.147  Sum_probs=174.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCcEEEEeccc-ccCeeeEEECCCCCE--EEEEe-------------
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYE-TGEYERALHGH-LDSVQDIAFDQSGKL--LVSCS-------------  167 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~-~~~~~~~~~~h-~~~V~~l~~~~~g~~--l~sgs-------------  167 (406)
                      ....+..++|+|++++|++++.+ .|.+||+. +++........ .+.+.+++|+|+|++  +++++             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            33467889999999999999988 99999997 78765433211 134667999999994  55553             


Q ss_pred             CCCcEEEEeCC-CCeEEEEEe----cCCcceEEEEEecCCCEEEEEeC-CCcEEEEEcC-CCeEE--EEee--cCCccEE
Q psy226          168 ADMSLKLWDMS-TYQCLKTMQ----GHDHNVTGVAFLPNSDFVLSASR-DKTIKMWEVA-TGYCV--KTLT--GHREWVR  236 (406)
Q Consensus       168 ~d~~i~vwd~~-~~~~~~~~~----~h~~~v~~~~~~p~~~~l~s~s~-d~~i~iwd~~-~~~~~--~~~~--~~~~~v~  236 (406)
                      .++++.+|++. +++....+.    .+...+.+++|+|+|++|++++. ++.|++||+. ++...  ..+.  .|...+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            68999999997 465544443    24567899999999998887664 6799999998 67543  2333  2356689


Q ss_pred             EEEECCCCCEEEEEeC-CCeEEEEeCC--Cccce---eEEe-------cCCc------eEEEEE-eCCCCCccccccccC
Q psy226          237 QIKVSPDGTLLASCSN-DHTARVWSLA--TKETK---AELR-------GHDH------TVECVA-WAPGVASESISEAAG  296 (406)
Q Consensus       237 ~l~~~~~~~~l~s~~~-d~~v~vwd~~--~~~~~---~~~~-------~~~~------~v~~~~-~~~~~~~~~~~~~~~  296 (406)
                      .++|+|+|+++++++. ++.|.+|++.  +++..   ..+.       +|..      .+..++ |+|            
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp------------  264 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF------------  264 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT------------
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC------------
Confidence            9999999999887774 7899999875  33321   1121       1121      477888 887            


Q ss_pred             CCCCCCCCCEEEEEeCC-C-----cEEEEECC-CCeEEE---EEeCCCcCEEEEEEcC---CCCEEEEEeCC-CeEEEEe
Q psy226          297 RPPGQGGGPYLATGSRD-K-----TIKLWDVG-SGSLLF---TLIGHDNWVRGVTFHP---GGKYLVSCGDD-KTLRVWD  362 (406)
Q Consensus       297 ~~~~~~~~~~l~s~~~d-~-----~i~lwd~~-~~~~~~---~~~~h~~~v~~l~~s~---~g~~l~sgs~d-~~i~vwd  362 (406)
                            +|++|++++.+ +     .|.+|++. +++...   ....+...+..++|+|   +|++|++++.+ +.|.+|+
T Consensus       265 ------dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          265 ------SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             ------TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             ------CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence                  46777766543 2     89999986 566543   2334555567889999   89999988864 8999999


Q ss_pred             CCCC
Q psy226          363 TANK  366 (406)
Q Consensus       363 ~~~~  366 (406)
                      +...
T Consensus       339 ~~~~  342 (365)
T 1jof_A          339 WKDE  342 (365)
T ss_dssp             EETT
T ss_pred             Echh
Confidence            8654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.88  E-value=3.1e-21  Score=180.95  Aligned_cols=272  Identities=14%  Similarity=0.112  Sum_probs=188.7

Q ss_pred             eEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q psy226          109 VIKVIFHPVFSLMASCSED---ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKT  185 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~d---g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~  185 (406)
                      +..++|+|+|+.|+.++..   ..|.+||..+++......++......+.|+|+|+.|+.++.++.|.+||+.+++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            6778999999998876543   3688889998876554443433344588999999999999999999999998876655


Q ss_pred             EecCCcceEE-------------------EEEecCCCEEEEE-----eCCCcEEEEEcCCCeEEEEeecCCccEEEEEEC
Q psy226          186 MQGHDHNVTG-------------------VAFLPNSDFVLSA-----SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVS  241 (406)
Q Consensus       186 ~~~h~~~v~~-------------------~~~~p~~~~l~s~-----s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  241 (406)
                      ...+......                   +.|+|+++.++.+     ..+..|.+||+.++...... .+...+..+.|+
T Consensus       118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s  196 (396)
T 3c5m_A          118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR  196 (396)
T ss_dssp             EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred             EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence            5544432222                   3456666655543     35678999999988765444 566778999999


Q ss_pred             C-CCCEEEEEeCC------CeEEEEeCCCccceeEEecC--CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC
Q psy226          242 P-DGTLLASCSND------HTARVWSLATKETKAELRGH--DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR  312 (406)
Q Consensus       242 ~-~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  312 (406)
                      | ++..|+.++.+      ..|.+||+....... +..+  ...+..+.|+|+                  |.+|+.++.
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spd------------------g~~l~~~~~  257 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPD------------------GSAMAYVSY  257 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTT------------------SSCEEEEEE
T ss_pred             CCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCC------------------CCEEEEEec
Confidence            9 78877776654      358888886554332 2222  335778899884                  555665544


Q ss_pred             C-----CcEEEEECCCCeEEEEEeCCCcCEEEEEEcC-CCCEEEEEe----------------CCCeEEEEeCCCCccce
Q psy226          313 D-----KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHP-GGKYLVSCG----------------DDKTLRVWDTANKRNMK  370 (406)
Q Consensus       313 d-----~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~-~g~~l~sgs----------------~d~~i~vwd~~~~~~~~  370 (406)
                      +     +.|++||+.+++...... ... .. +.|+| +|+++++++                .++.|++||..+++. .
T Consensus       258 ~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~  333 (396)
T 3c5m_A          258 FKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-Q  333 (396)
T ss_dssp             ETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-C
T ss_pred             CCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-E
Confidence            3     449999998886543322 112 23 89999 999888765                347899999987764 3


Q ss_pred             eeccccc-----------eEEEEEEeCCCCEEEEeeC-CCeEEEee
Q psy226          371 TLEAHSH-----------FVTSLDFHRAHPYVVTGSV-DKTVKVWE  404 (406)
Q Consensus       371 ~l~~h~~-----------~v~~l~~~~~~~~l~sgs~-Dg~v~iw~  404 (406)
                      .+..+..           .+..++|+|+++.|+.++. ++...+|.
T Consensus       334 ~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          334 KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence            4544443           2566789999998877664 56666664

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.88  E-value=2.4e-19  Score=164.37  Aligned_cols=247  Identities=16%  Similarity=0.155  Sum_probs=192.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCC------------------------CcEEEEEcCCCcEEEEec-ccccCeeeEEECCCC
Q psy226          106 RSPVIKVIFHPVFSLMASCSED------------------------ATIRLWDYETGEYERALH-GHLDSVQDIAFDQSG  160 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~d------------------------g~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g  160 (406)
                      -+.|.+|+++|+++++++.+.+                        ++|.+||..++++...+. ++......++++++|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999999998887                        579999999998876654 455678999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCe-EEEEE---------ecCCcceEEEEEec-CCCEEEEEe-CCCcEEEEEcCCCeEEEEe
Q psy226          161 KLLVSCSADMSLKLWDMSTYQ-CLKTM---------QGHDHNVTGVAFLP-NSDFVLSAS-RDKTIKMWEVATGYCVKTL  228 (406)
Q Consensus       161 ~~l~sgs~d~~i~vwd~~~~~-~~~~~---------~~h~~~v~~~~~~p-~~~~l~s~s-~d~~i~iwd~~~~~~~~~~  228 (406)
                      +++++.+.++.|++||..... .+..+         .++.....+++++| ++.++++.+ .++.|++|| .++..+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999986542 34444         23444688999999 788888876 689999999 567776666


Q ss_pred             ec----------CCccEEEEEECCC-CCEEEEEeCCCeEEEEeCCCccceeEEe--cCCceEEEEEeCCCCCcccccccc
Q psy226          229 TG----------HREWVRQIKVSPD-GTLLASCSNDHTARVWSLATKETKAELR--GHDHTVECVAWAPGVASESISEAA  295 (406)
Q Consensus       229 ~~----------~~~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~  295 (406)
                      ..          +-.....++++|+ +.++++...++.|++||..+++.+..+.  .+...+..+++.|+.....     
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~-----  256 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV-----  256 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE-----
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe-----
Confidence            42          2234789999998 7788888889999999998777766663  3556677888887211100     


Q ss_pred             CCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe---CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q psy226          296 GRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI---GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN  365 (406)
Q Consensus       296 ~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~---~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~  365 (406)
                             ++...++.+.+..|++||..+++.+..+.   ++...+.+|+++|+|..+++...+++|++|++..
T Consensus       257 -------~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          257 -------NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             -------ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             -------CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                   12233344456689999999999988873   6777899999999998888888999999999754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.87  E-value=7.9e-19  Score=157.44  Aligned_cols=241  Identities=13%  Similarity=0.247  Sum_probs=182.5

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec------ccccCeeeEEE-CCCCCEEEEEeC-CCcEEEE
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH------GHLDSVQDIAF-DQSGKLLVSCSA-DMSLKLW  175 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~------~h~~~V~~l~~-~~~g~~l~sgs~-d~~i~vw  175 (406)
                      +|...+.+++++|++.++++...++.|.+||.. ++....+.      +|...+.++++ .+++.++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            456778999999999999999999999999987 55555543      34567889999 577777666643 8899999


Q ss_pred             eCCCCeEEEEEec-CCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee--cCCccEEEEEECCCCCEEEEEeC
Q psy226          176 DMSTYQCLKTMQG-HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT--GHREWVRQIKVSPDGTLLASCSN  252 (406)
Q Consensus       176 d~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~  252 (406)
                      | .+++.+..+.. +...+.++++.|+++++++...++.|.+||. .+..+..+.  ++...+..++++|+|+++++...
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            9 55666666543 3456899999999998888778899999996 455555554  34456899999999998888888


Q ss_pred             CCeEEEEeCCCccceeEEecC--CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC-cEEEEECCCCeEEEE
Q psy226          253 DHTARVWSLATKETKAELRGH--DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK-TIKLWDVGSGSLLFT  329 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~lwd~~~~~~~~~  329 (406)
                      ++.|++||.. +..+..+..+  ...+..+++.|                  +|.++++...++ .|.+||. +++.+..
T Consensus       184 ~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~------------------~G~l~v~~~~~~~~i~~~~~-~g~~~~~  243 (286)
T 1q7f_A          184 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS------------------NGEILIADNHNNFNLTIFTQ-DGQLISA  243 (286)
T ss_dssp             GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT------------------TCCEEEEECSSSCEEEEECT-TSCEEEE
T ss_pred             CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC------------------CCCEEEEeCCCCEEEEEECC-CCCEEEE
Confidence            9999999974 3444444333  24567777776                  466777777775 9999995 5666666


Q ss_pred             EeCCC--cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q psy226          330 LIGHD--NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN  368 (406)
Q Consensus       330 ~~~h~--~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~  368 (406)
                      +..+.  ..+.+++++|+|+++++ +.|++|++|++.....
T Consensus       244 ~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          244 LESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             EEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             EcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence            65543  34789999999987777 6799999999865433

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.87  E-value=2.1e-19  Score=166.92  Aligned_cols=257  Identities=12%  Similarity=0.178  Sum_probs=182.6

Q ss_pred             CCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEecC------
Q psy226          126 EDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS----------ADMSLKLWDMSTYQCLKTMQGH------  189 (406)
Q Consensus       126 ~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs----------~d~~i~vwd~~~~~~~~~~~~h------  189 (406)
                      .|++|.+||..+++....+..+..+  .++|+|+|++|++++          .+++|.+||..+++.+..+...      
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            4789999999999988888776655  899999999999886          3678999999998888777643      


Q ss_pred             CcceEEEEEecCCCEEEEEeC--CCcEEEEEcCCCeEEEE-eecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCC-c
Q psy226          190 DHNVTGVAFLPNSDFVLSASR--DKTIKMWEVATGYCVKT-LTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLAT-K  264 (406)
Q Consensus       190 ~~~v~~~~~~p~~~~l~s~s~--d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~-~  264 (406)
                      ......++|+|+|++|++++.  +++|.+||+.+++.+.. +....  ...+.+.|++ ..+++.+.||.+.+|++.. +
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g  184 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMTICGDGGLLTINLGEDG  184 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence            234567999999999998864  68999999999988777 54322  1224566765 6677888888888887754 2


Q ss_pred             cceeE--------------------------EecCCceEEEEEeCCCCCcc--cc-------ccccCCC------CCCCC
Q psy226          265 ETKAE--------------------------LRGHDHTVECVAWAPGVASE--SI-------SEAAGRP------PGQGG  303 (406)
Q Consensus       265 ~~~~~--------------------------~~~~~~~v~~~~~~~~~~~~--~~-------~~~~~~~------~~~~~  303 (406)
                      +....                          +..+...+..+.+.++....  ..       ......+      ...++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d  264 (361)
T 2oiz_A          185 KVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA  264 (361)
T ss_dssp             SEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred             cEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence            22100                          01112233333333221000  00       0000000      11223


Q ss_pred             CCEEEEEeC-----------CCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ccce
Q psy226          304 GPYLATGSR-----------DKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK--RNMK  370 (406)
Q Consensus       304 ~~~l~s~~~-----------d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~--~~~~  370 (406)
                      +..++++..           .+.|.+||+.+++.+.++..+.  +.+++|+|+|++|++++. +.|.|||..++  +.++
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~  341 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLR  341 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEE
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeE
Confidence            445554432           3479999999999999998877  899999999999998887 99999999999  8888


Q ss_pred             eeccccceEEEEEEeCCCC
Q psy226          371 TLEAHSHFVTSLDFHRAHP  389 (406)
Q Consensus       371 ~l~~h~~~v~~l~~~~~~~  389 (406)
                      ++..+......++++|+|.
T Consensus       342 ~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          342 TIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EETTSCSSEEEEEECCCSC
T ss_pred             EeccCCCCcEEEEecCCCC
Confidence            8866777788999999985

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.86  E-value=1.1e-18  Score=156.61  Aligned_cols=236  Identities=13%  Similarity=0.241  Sum_probs=179.5

Q ss_pred             ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe------cCCcceEEEEEe-cCCCEEEEEeC-CCcEEEE
Q psy226          146 GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ------GHDHNVTGVAFL-PNSDFVLSASR-DKTIKMW  217 (406)
Q Consensus       146 ~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~------~h~~~v~~~~~~-p~~~~l~s~s~-d~~i~iw  217 (406)
                      ++...+.+++++++|+++++.+.++.|.+||.. ++.+..+.      ++...+.++++. +++.++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            456678999999999988888889999999987 55555553      234568899995 56665555533 8899999


Q ss_pred             EcCCCeEEEEee-cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe--cCCceEEEEEeCCCCCccccccc
Q psy226          218 EVATGYCVKTLT-GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR--GHDHTVECVAWAPGVASESISEA  294 (406)
Q Consensus       218 d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~  294 (406)
                      | .++..+..+. .+...+..++++|+|+++++...++.|.+||.. +.....+.  .+...+..+++.|          
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~----------  173 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND----------  173 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS----------
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC----------
Confidence            9 5677666664 344578899999999988888889999999964 33344443  3344577888876          


Q ss_pred             cCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC--CcCEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCcccee
Q psy226          295 AGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH--DNWVRGVTFHPGGKYLVSCGDDK-TLRVWDTANKRNMKT  371 (406)
Q Consensus       295 ~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h--~~~v~~l~~s~~g~~l~sgs~d~-~i~vwd~~~~~~~~~  371 (406)
                              ++.++++.+.++.|++||. .++.+..+..+  ...+.+++++|+|+++++...++ .|.+||. +++.+..
T Consensus       174 --------~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~  243 (286)
T 1q7f_A          174 --------KQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISA  243 (286)
T ss_dssp             --------SSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEE
T ss_pred             --------CCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEE
Confidence                    3567777778899999997 55666666543  36789999999999988888886 9999995 4666666


Q ss_pred             eccccc--eEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          372 LEAHSH--FVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       372 l~~h~~--~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +..+..  .+.+++++|++.++++ +.|++|++|++
T Consensus       244 ~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          244 LESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             EEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred             EcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence            655433  4789999999987777 57999999986

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=1.9e-19  Score=165.62  Aligned_cols=234  Identities=14%  Similarity=0.039  Sum_probs=168.9

Q ss_pred             CeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEeccc------ccCeeeEEECCCCCEEEEEeCC-----------
Q psy226          108 PVIKVIFHPVFSLM-ASCSEDATIRLWDYETGEYERALHGH------LDSVQDIAFDQSGKLLVSCSAD-----------  169 (406)
Q Consensus       108 ~V~~v~~~p~~~~l-atgs~dg~v~vwd~~~~~~~~~~~~h------~~~V~~l~~~~~g~~l~sgs~d-----------  169 (406)
                      .+..++|+|+++.+ +++..++.|.+||..+++....+..+      ...+.+++|+|+|++|++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            57789999999865 46667899999999999887766532      2348899999999999998865           


Q ss_pred             -CcEEEEeCCCCe---EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCc------------
Q psy226          170 -MSLKLWDMSTYQ---CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE------------  233 (406)
Q Consensus       170 -~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~------------  233 (406)
                       +.|.+||+.+++   .+..+.. ...+.+++|+|+++ +++++.  .|.+||..++..+..+..+..            
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  199 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             CCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCcccee
Confidence             899999998743   2334433 34688999999999 665544  499999999988777654320            


Q ss_pred             ------------cEEEEEECCCCCE-----------EEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCC-CCCcc
Q psy226          234 ------------WVRQIKVSPDGTL-----------LASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAP-GVASE  289 (406)
Q Consensus       234 ------------~v~~l~~~~~~~~-----------l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  289 (406)
                                  ....+++++++..           +.....++.+++|++.         .+...+..++++| +    
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~sp~d----  266 (349)
T 1jmx_B          200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA---------DLTELYFTGLRSPKD----  266 (349)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------ECSSCEEEEEECSSC----
T ss_pred             eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------cCCCcceeeEecCCC----
Confidence                        2344666655421           1122234445554432         2445567777876 4    


Q ss_pred             ccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc
Q psy226          290 SISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNM  369 (406)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~  369 (406)
                                    +.+++++  ++.|.+||+.+++.+..+... ..+.+++|+|+|++|++++.++.|++||..+++.+
T Consensus       267 --------------g~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          267 --------------PNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             --------------TTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             --------------CCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence                          5567777  889999999999988776543 34678999999999988888999999999998877


Q ss_pred             eeeccc
Q psy226          370 KTLEAH  375 (406)
Q Consensus       370 ~~l~~h  375 (406)
                      ..+...
T Consensus       330 ~~~~~~  335 (349)
T 1jmx_B          330 KNIKLP  335 (349)
T ss_dssp             EEEECS
T ss_pred             eeeecC
Confidence            776543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.86  E-value=3.7e-19  Score=164.05  Aligned_cols=256  Identities=10%  Similarity=0.109  Sum_probs=180.3

Q ss_pred             CeEEEEEcCCCCEEEEEe---------CCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC---C--cEE
Q psy226          108 PVIKVIFHPVFSLMASCS---------EDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD---M--SLK  173 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs---------~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d---~--~i~  173 (406)
                      .+...++  +|+.++...         .++.|.+||+.+++... +    ..+..+.|+|+|+.|+.++.+   +  .|.
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            3556667  788776542         36789999999887543 3    568899999999999887754   3  477


Q ss_pred             EEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC---------------------------CcEEEEEcCCCeEEE
Q psy226          174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD---------------------------KTIKMWEVATGYCVK  226 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d---------------------------~~i~iwd~~~~~~~~  226 (406)
                      +||+.+++.......+ . +..++|+|+++.|+.++.+                           ..|.+||+.++..+.
T Consensus        89 ~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~  166 (347)
T 2gop_A           89 VADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE  166 (347)
T ss_dssp             EEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred             EEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence            8888887765544433 3 9999999999988887642                           578999999887745


Q ss_pred             EeecCCccEEEEEECCCCCEEEEEeCCC-------eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCC
Q psy226          227 TLTGHREWVRQIKVSPDGTLLASCSNDH-------TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPP  299 (406)
Q Consensus       227 ~~~~~~~~v~~l~~~~~~~~l~s~~~d~-------~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  299 (406)
                      .+.. . .+..++|+|+| +++++..++       ...+|.+.+++ ...+..+ ..+..+  +|               
T Consensus       167 ~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--sp---------------  224 (347)
T 2gop_A          167 EFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DS---------------  224 (347)
T ss_dssp             EEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EE---------------
T ss_pred             eecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CC---------------
Confidence            5555 3 78899999999 777776552       34555444333 2333333 333222  44               


Q ss_pred             CCCCCCEEEEEeCC--------CcEEEEECCCCeEEEEEeCCCcCEEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCccce
Q psy226          300 GQGGGPYLATGSRD--------KTIKLWDVGSGSLLFTLIGHDNWVRG-VTFHPGGKYLVSCGDDKTLRVWDTANKRNMK  370 (406)
Q Consensus       300 ~~~~~~~l~s~~~d--------~~i~lwd~~~~~~~~~~~~h~~~v~~-l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~  370 (406)
                         +|.+++.++.+        ..|.+||  +++......+|...+.. +.|+ +| ++++++.++.++|| +.+++. .
T Consensus       225 ---dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~  295 (347)
T 2gop_A          225 ---DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-K  295 (347)
T ss_dssp             ---CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-E
T ss_pred             ---CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-E
Confidence               46667666644        3688888  56654444556777886 9999 88 88999999999999 875554 3


Q ss_pred             eeccccceEEEEEEeCCCCEEEEeeCCCeE-EEeec
Q psy226          371 TLEAHSHFVTSLDFHRAHPYVVTGSVDKTV-KVWEC  405 (406)
Q Consensus       371 ~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v-~iw~~  405 (406)
                      .+..+...|.+++|+|  .++++++.++.. .+|.+
T Consensus       296 ~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          296 PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred             EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence            4444577899999999  677777777765 77764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.86  E-value=2.8e-19  Score=164.00  Aligned_cols=239  Identities=10%  Similarity=0.100  Sum_probs=185.8

Q ss_pred             ccCeeeEEECCCCCEEEEEeCC------------------------CcEEEEeCCCCeEEEEEe-cCCcceEEEEEecCC
Q psy226          148 LDSVQDIAFDQSGKLLVSCSAD------------------------MSLKLWDMSTYQCLKTMQ-GHDHNVTGVAFLPNS  202 (406)
Q Consensus       148 ~~~V~~l~~~~~g~~l~sgs~d------------------------~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~  202 (406)
                      .+.+.+|+++++|+++++.+.+                        ++|.+||..+++.+..+. ++-....+++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3568999999999999888877                        479999998888776554 344578899999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCe-EEEEe---------ecCCccEEEEEECC-CCCEEEEEe-CCCeEEEEeCCCccceeEE
Q psy226          203 DFVLSASRDKTIKMWEVATGY-CVKTL---------TGHREWVRQIKVSP-DGTLLASCS-NDHTARVWSLATKETKAEL  270 (406)
Q Consensus       203 ~~l~s~s~d~~i~iwd~~~~~-~~~~~---------~~~~~~v~~l~~~~-~~~~l~s~~-~d~~v~vwd~~~~~~~~~~  270 (406)
                      +++++.+.++.|++||..... .+..+         .++......++++| +|.++++.+ .++.|++||. .+.....+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEe
Confidence            988888889999999975442 44444         23445688999999 888888886 6999999994 44444444


Q ss_pred             ec----------CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe--CCCcCEE
Q psy226          271 RG----------HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI--GHDNWVR  338 (406)
Q Consensus       271 ~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~--~h~~~v~  338 (406)
                      ..          +......+++.|+                 .+.++++...++.|++||..+++.+..+.  .+...+.
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~-----------------~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~  244 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPH-----------------LDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF  244 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETT-----------------TTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEE
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECC-----------------CCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcc
Confidence            32          1123667777762                 26677788888999999999899888874  4567789


Q ss_pred             EEEEcCCCCEEEEE-------eCCCeEEEEeCCCCccceeec---cccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          339 GVTFHPGGKYLVSC-------GDDKTLRVWDTANKRNMKTLE---AHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       339 ~l~~s~~g~~l~sg-------s~d~~i~vwd~~~~~~~~~l~---~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +++|+| +..+++.       +.+.+|++||..+++.+..+.   .+...+..|+++|+|.++++...++.|++|++
T Consensus       245 ~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          245 AISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             EEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             eeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            999999 4444433       345589999999998888873   56667899999999988999999999999985

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=99.86  E-value=4.2e-22  Score=137.04  Aligned_cols=80  Identities=71%  Similarity=1.049  Sum_probs=68.3

Q ss_pred             CCCChhhHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCh--hhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy226            1 MVLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLPA--EVEKKYSGLLEKKWTSVIRLQKKVIELESKLSEAEKEYV   78 (406)
Q Consensus         1 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   78 (406)
                      |+||+||++|||++|++||..+++.+++++|+.+++++.  +...+|.|+|||||++++|||||+++||+++.+.+.+..
T Consensus         3 miLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKImdLE~~~~~l~~el~   82 (88)
T 1uuj_A            3 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEEFT   82 (88)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHHHHHHHHHHHTTC---
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999987653  334589999999999999999999999999988877765


Q ss_pred             hC
Q psy226           79 EG   80 (406)
Q Consensus        79 ~~   80 (406)
                      .+
T Consensus        83 ~~   84 (88)
T 1uuj_A           83 SG   84 (88)
T ss_dssp             --
T ss_pred             hc
Confidence            43

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.85  E-value=4.8e-19  Score=162.43  Aligned_cols=267  Identities=9%  Similarity=0.058  Sum_probs=194.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      ..|.+++|+|++..++..+.++.++.|   .++....+..+...+.+++|+++|++++++..++.|.+||..+++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            346778899998888877889999999   34555566677777899999999998888888999999999887765544


Q ss_pred             ecCCcceEEEEEecCCCEEEEEeCC----CcEEEEEcCCCeEEEEee--cCCccEEEEEECCCCCEEEEEeC------CC
Q psy226          187 QGHDHNVTGVAFLPNSDFVLSASRD----KTIKMWEVATGYCVKTLT--GHREWVRQIKVSPDGTLLASCSN------DH  254 (406)
Q Consensus       187 ~~h~~~v~~~~~~p~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~------d~  254 (406)
                      ..+...+.+++++|+++++++...+    +.|.+||..++.....+.  .+...+..++++|+|+++++...      .+
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  162 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG  162 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence            4566789999999999988877666    689999998876543333  24457899999999998887654      35


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEE-EEEeCCCcEEEEECCC-CeEEE----
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYL-ATGSRDKTIKLWDVGS-GSLLF----  328 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~lwd~~~-~~~~~----  328 (406)
                      .|..+|..+.+... +......+..++|+|                  ++.++ ++.+.++.|.+||+.+ +..+.    
T Consensus       163 ~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~------------------dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~  223 (333)
T 2dg1_A          163 GVYYVSPDFRTVTP-IIQNISVANGIALST------------------DEKVLWVTETTANRLHRIALEDDGVTIQPFGA  223 (333)
T ss_dssp             EEEEECTTSCCEEE-EEEEESSEEEEEECT------------------TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE
T ss_pred             eEEEEeCCCCEEEE-eecCCCcccceEECC------------------CCCEEEEEeCCCCeEEEEEecCCCcCcccccc
Confidence            56666655433322 222233466778877                  35544 4555678999999863 33221    


Q ss_pred             ----EEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccc------eEEEEEEeCCCCEEEEeeCC
Q psy226          329 ----TLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSH------FVTSLDFHRAHPYVVTGSVD  397 (406)
Q Consensus       329 ----~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~------~v~~l~~~~~~~~l~sgs~D  397 (406)
                          .+.++ ..+..++++++|+++++...++.|.+||. +++.+..+..+..      .+.+++|+|++..|..++.+
T Consensus       224 ~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          224 TIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             eEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence                12222 46788999999998888888899999998 4666666654432      68899999998777655554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=4.5e-19  Score=166.01  Aligned_cols=255  Identities=17%  Similarity=0.134  Sum_probs=182.0

Q ss_pred             EEEEcCCCcEEEEecccccCeee-----EEECCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEEecCCcceEEEEEecCC
Q psy226          131 RLWDYETGEYERALHGHLDSVQD-----IAFDQSGKLLVSCSA-DM--SLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS  202 (406)
Q Consensus       131 ~vwd~~~~~~~~~~~~h~~~V~~-----l~~~~~g~~l~sgs~-d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~  202 (406)
                      ..+|..++.....+..|......     .+|+|||++|+.++. ++  .|.+||+.+++......++...+.++.|+|++
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg   92 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD   92 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence            34577778777888877765555     889999999998887 66  48888999988777666676666678899999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEE--ECCCCCEEEEE----------------------eCCCeEEE
Q psy226          203 DFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK--VSPDGTLLASC----------------------SNDHTARV  258 (406)
Q Consensus       203 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~--~~~~~~~l~s~----------------------~~d~~v~v  258 (406)
                      +.|+.++.++.|++||+.++........+...+....  ++|++.+++..                      ..+..|.+
T Consensus        93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (388)
T 3pe7_A           93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR  172 (388)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence            9999999999999999999988777776766664443  48999988743                      24578999


Q ss_pred             EeCCCccceeEEecCCceEEEEEeCC-CCCccccccccCCCCCCCCCCEEEEEeCC------CcEEEEECCCCeEEEEEe
Q psy226          259 WSLATKETKAELRGHDHTVECVAWAP-GVASESISEAAGRPPGQGGGPYLATGSRD------KTIKLWDVGSGSLLFTLI  331 (406)
Q Consensus       259 wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~lwd~~~~~~~~~~~  331 (406)
                      ||+.+++.. .+..+...+..+.|+| +                  |..++..+.+      ..|.++|+..+.. ..+.
T Consensus       173 ~d~~~g~~~-~l~~~~~~~~~~~~sp~d------------------g~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~  232 (388)
T 3pe7_A          173 VDLKTGEST-VILQENQWLGHPIYRPYD------------------DSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVK  232 (388)
T ss_dssp             EETTTCCEE-EEEEESSCEEEEEEETTE------------------EEEEEEEECSCTTTSSCSEEEEETTSCCC-EESC
T ss_pred             EECCCCceE-EeecCCccccccEECCCC------------------CCEEEEEEecCCCCCcceEEEEeCCCCce-EEee
Confidence            999887543 4445566678889988 4                  4556655543      3788888765543 3444


Q ss_pred             CCC--cCEEEEEEcCCCCEEEEEeC-C----CeEEEEeCCCCcc--ceeeccccceE---EEEEEeCCCCEEEEe-----
Q psy226          332 GHD--NWVRGVTFHPGGKYLVSCGD-D----KTLRVWDTANKRN--MKTLEAHSHFV---TSLDFHRAHPYVVTG-----  394 (406)
Q Consensus       332 ~h~--~~v~~l~~s~~g~~l~sgs~-d----~~i~vwd~~~~~~--~~~l~~h~~~v---~~l~~~~~~~~l~sg-----  394 (406)
                      .+.  ..+...+|+|+|+.|+..+. +    ..|++||+.+++.  +..+..+....   ..++|+|+|+.|+..     
T Consensus       233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  312 (388)
T 3pe7_A          233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS  312 (388)
T ss_dssp             CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--------
T ss_pred             eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecc
Confidence            444  35788999999997765443 2    2499999998764  22333321111   123799999988753     


Q ss_pred             ----eCCCeEEEeec
Q psy226          395 ----SVDKTVKVWEC  405 (406)
Q Consensus       395 ----s~Dg~v~iw~~  405 (406)
                          ..+..|.+||+
T Consensus       313 ~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          313 GYKIENDPFLYVFNM  327 (388)
T ss_dssp             ----CCCCEEEEEET
T ss_pred             ccccCCCCEEEEEec
Confidence                45678999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.84  E-value=9.8e-20  Score=185.17  Aligned_cols=234  Identities=10%  Similarity=0.126  Sum_probs=169.6

Q ss_pred             cCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcc-----eEEEEEecCCCEEEEEeCC---------CcE
Q psy226          149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN-----VTGVAFLPNSDFVLSASRD---------KTI  214 (406)
Q Consensus       149 ~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~p~~~~l~s~s~d---------~~i  214 (406)
                      ....++.|+|+|.+++++  |++|++||+.++++...+.+|...     ...+.|+|||++|+.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            346689999999999886  999999999999988788877643     2347899999999998876         556


Q ss_pred             EEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEE-ecCCceE----------------
Q psy226          215 KMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL-RGHDHTV----------------  277 (406)
Q Consensus       215 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v----------------  277 (406)
                      .+||+.++... .+..|...+...+|||||+.||.+. |+.|++|++.++...... .++...+                
T Consensus        95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            79999998754 4667788899999999999999885 689999999876644321 1222212                


Q ss_pred             -EEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC------------------------------------CcEEEEE
Q psy226          278 -ECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD------------------------------------KTIKLWD  320 (406)
Q Consensus       278 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------------------------------------~~i~lwd  320 (406)
                       ..+.|+|+.                  ..|+.++.|                                    ..|++||
T Consensus       173 ~~~~~wSpDg------------------~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d  234 (740)
T 4a5s_A          173 YSALWWSPNG------------------TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVN  234 (740)
T ss_dssp             SBCEEECTTS------------------SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred             CcceEECCCC------------------CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEE
Confidence             247788853                  334333211                                    1588899


Q ss_pred             CCC---C---eEEEEEe------CCCcCEEEEEEcCCCCEEEEEe----CCCeEEEEeCCCCc----c--ceee--cccc
Q psy226          321 VGS---G---SLLFTLI------GHDNWVRGVTFHPGGKYLVSCG----DDKTLRVWDTANKR----N--MKTL--EAHS  376 (406)
Q Consensus       321 ~~~---~---~~~~~~~------~h~~~v~~l~~s~~g~~l~sgs----~d~~i~vwd~~~~~----~--~~~l--~~h~  376 (406)
                      +.+   +   +.. .+.      +|...+..++|+|||+.++...    .+..|++||..+++    +  +..+  ..|.
T Consensus       235 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~  313 (740)
T 4a5s_A          235 TDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTT  313 (740)
T ss_dssp             TTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSS
T ss_pred             CCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCC
Confidence            988   7   333 333      3888899999999999766543    23479999998876    2  2333  4455


Q ss_pred             ceEE-----EEEEeCCCCEEE-Eee-CCC--eEEEeec
Q psy226          377 HFVT-----SLDFHRAHPYVV-TGS-VDK--TVKVWEC  405 (406)
Q Consensus       377 ~~v~-----~l~~~~~~~~l~-sgs-~Dg--~v~iw~~  405 (406)
                      ..|.     ..+|+|||+.|+ ..+ .+|  .|.+|+.
T Consensus       314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~  351 (740)
T 4a5s_A          314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQI  351 (740)
T ss_dssp             SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred             ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence            5544     788999999876 555 444  4666664

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=4.5e-19  Score=178.03  Aligned_cols=254  Identities=16%  Similarity=0.095  Sum_probs=169.7

Q ss_pred             EeccCCCCeE---------EEEEc--CCCCE-EEEEeC-CCcEEEEEcC--C-CcEEEEecc-----cccCeeeEEECCC
Q psy226          101 ALSGHRSPVI---------KVIFH--PVFSL-MASCSE-DATIRLWDYE--T-GEYERALHG-----HLDSVQDIAFDQS  159 (406)
Q Consensus       101 ~l~~h~~~V~---------~v~~~--p~~~~-latgs~-dg~v~vwd~~--~-~~~~~~~~~-----h~~~V~~l~~~~~  159 (406)
                      .+.+|...|.         ...|+  ||++. |+.++. +..|.+|+..  + ++ ...+..     |...+.+++|+||
T Consensus        62 ~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spD  140 (662)
T 3azo_A           62 SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPE  140 (662)
T ss_dssp             ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETT
T ss_pred             eeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCC
Confidence            4445555554         55555  99988 775554 5667777766  3 44 444554     6678899999999


Q ss_pred             CCEEEEEeCC----------CcEEEEeCCC------CeEEEEEe-cCCcceEEEEEecCCCEEEEEeCC--------CcE
Q psy226          160 GKLLVSCSAD----------MSLKLWDMST------YQCLKTMQ-GHDHNVTGVAFLPNSDFVLSASRD--------KTI  214 (406)
Q Consensus       160 g~~l~sgs~d----------~~i~vwd~~~------~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d--------~~i  214 (406)
                      |+.|++++.|          ..|++||+.+      ++. ..+. .+...+..++|+|||++|+.++.+        ..|
T Consensus       141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i  219 (662)
T 3azo_A          141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL  219 (662)
T ss_dssp             TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred             CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence            9999998877          5899999987      554 3454 555678889999999999887755        379


Q ss_pred             EEEEcC-CC---eEEEEeecCCccEEEEEECCCCCEEEEEeCCC--eEEEEeCCCccceeEEecCCceEEEEEeCCCCCc
Q psy226          215 KMWEVA-TG---YCVKTLTGHREWVRQIKVSPDGTLLASCSNDH--TARVWSLATKETKAELRGHDHTVECVAWAPGVAS  288 (406)
Q Consensus       215 ~iwd~~-~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  288 (406)
                      .+||+. ++   .......+|...+..++|+|||++++++..++  .|.+||+.+++...... +...+....|.|+...
T Consensus       220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~  298 (662)
T 3azo_A          220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRW  298 (662)
T ss_dssp             EEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCS
T ss_pred             EEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCce
Confidence            999998 57   44444555678899999999999888888888  56666665554333222 2222211222222111


Q ss_pred             cccccccCCCCCCCCCCEEEEEeCCCcEEEE--ECCCCeEEEEEeCCCcCEEEE-EEcCCCCEEEEEeCCCe--EEEEeC
Q psy226          289 ESISEAAGRPPGQGGGPYLATGSRDKTIKLW--DVGSGSLLFTLIGHDNWVRGV-TFHPGGKYLVSCGDDKT--LRVWDT  363 (406)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lw--d~~~~~~~~~~~~h~~~v~~l-~~s~~g~~l~sgs~d~~--i~vwd~  363 (406)
                      ..         ..+++.++++++. +.++||  |+.+++ +..+..|...+..+ +++++.-++++++.+..  |.+||.
T Consensus       299 ~~---------~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~  367 (662)
T 3azo_A          299 FA---------PLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDT  367 (662)
T ss_dssp             EE---------ECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred             Ee---------EeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence            00         0124678888888 999999  665555 67777787778877 55544444455666654  555566


Q ss_pred             CCCcc
Q psy226          364 ANKRN  368 (406)
Q Consensus       364 ~~~~~  368 (406)
                      .+++.
T Consensus       368 ~~g~~  372 (662)
T 3azo_A          368 VTGRA  372 (662)
T ss_dssp             TTCCE
T ss_pred             CCCce
Confidence            66654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.83  E-value=4.3e-16  Score=140.00  Aligned_cols=276  Identities=9%  Similarity=0.028  Sum_probs=199.3

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEe-cccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERAL-HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      .+..+...+.++++.|++.+.++...++.|.+||.. ++..... ..+...+.+++++++|.+.++...++.|..||.. 
T Consensus         9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            344566789999999999988887778999999988 6654332 3345678999999999988887778899999986 


Q ss_pred             CeEEEEEe--cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEE-eecCCccEEEEEECCCCCEEEEEeCCCeE
Q psy226          180 YQCLKTMQ--GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKT-LTGHREWVRQIKVSPDGTLLASCSNDHTA  256 (406)
Q Consensus       180 ~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~d~~v  256 (406)
                      ++. ..+.  .....+.++++.|++.++++...++.|..||. ++..... ...+...+..++++++|+++++...++.|
T Consensus        87 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  164 (299)
T 2z2n_A           87 GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI  164 (299)
T ss_dssp             SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence            332 2222  24557889999999988887777889999998 5544332 23344568899999999888887778999


Q ss_pred             EEEeCCCccceeE-EecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEE-EeCCC
Q psy226          257 RVWSLATKETKAE-LRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFT-LIGHD  334 (406)
Q Consensus       257 ~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~-~~~h~  334 (406)
                      ..||. +++.... +......+..+++.+                  ++.+.++...++.|..||. ++..... ...+.
T Consensus       165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~------------------~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~  224 (299)
T 2z2n_A          165 GRITE-SGDITEFKIPTPASGPVGITKGN------------------DDALWFVEIIGNKIGRITT-SGEITEFKIPTPN  224 (299)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECT------------------TSSEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred             EEEcC-CCcEEEeeCCCCCCcceeEEECC------------------CCCEEEEccCCceEEEECC-CCcEEEEECCCCC
Confidence            99998 5443322 222334566677665                  3556666666788999999 6664332 33355


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee--ccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL--EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l--~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      ..+.+++++++|+..++...++.|.+||. +++ +..+  ..+...+.++++ +++.+.++.+ .+.+..++
T Consensus       225 ~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~  292 (299)
T 2z2n_A          225 ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLT  292 (299)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred             CCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence            67999999999997777667889999998 343 2233  344567899999 8888877765 45555555

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.82  E-value=8.4e-18  Score=170.17  Aligned_cols=244  Identities=15%  Similarity=0.091  Sum_probs=180.8

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCc-------
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDA-----TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMS-------  171 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg-----~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~-------  171 (406)
                      +|...+..++|||||++||.++.++     .|++||+.+++.......+ ..+.+++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3545688999999999999776544     8999999999876543322 23778999999999999988876       


Q ss_pred             ---------EEEEeCCCCe----EEEEEecCCcceEEEEEecCCCEEEEEeC-----CCcEEEEEcCC------Ce-EEE
Q psy226          172 ---------LKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASR-----DKTIKMWEVAT------GY-CVK  226 (406)
Q Consensus       172 ---------i~vwd~~~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-----d~~i~iwd~~~------~~-~~~  226 (406)
                               |++|++.+++    .+.....|...+.++.|+|+|++|+.++.     +..|.+||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     9999998765    22222234556789999999999887764     56899999987      53 356


Q ss_pred             EeecCCccEEEEEECCCCCEEEEEeCCC----eEEEEeCCCccc--eeEEecCCc--eEEEEEeCCCCCccccccccCCC
Q psy226          227 TLTGHREWVRQIKVSPDGTLLASCSNDH----TARVWSLATKET--KAELRGHDH--TVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       227 ~~~~~~~~v~~l~~~~~~~~l~s~~~d~----~v~vwd~~~~~~--~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                      .+..+...+.. .|+|+|..|+..+.++    .|.+||+.++..  ...+..|..  .+..+.|.+              
T Consensus       281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------  345 (710)
T 2xdw_A          281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR--------------  345 (710)
T ss_dssp             EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET--------------
T ss_pred             EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc--------------
Confidence            66666665554 4888998887766543    599999987642  345555543  677788764              


Q ss_pred             CCCCCCCEEEEEeCCCc--EEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEE-EEe---CCCeEEEEeCCCCc
Q psy226          299 PGQGGGPYLATGSRDKT--IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLV-SCG---DDKTLRVWDTANKR  367 (406)
Q Consensus       299 ~~~~~~~~l~s~~~d~~--i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~-sgs---~d~~i~vwd~~~~~  367 (406)
                          ++.++++...|+.  |.+||+.+|+.+..+..+...+..++++|++..++ +.+   ..++|++||+.+++
T Consensus       346 ----~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          346 ----SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ----TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ----CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence                3557788888874  66678878887788887888899999999987665 333   34789999998776

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.82  E-value=1.4e-17  Score=168.56  Aligned_cols=239  Identities=10%  Similarity=0.050  Sum_probs=172.9

Q ss_pred             cccCeeeEEECCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCc--------
Q psy226          147 HLDSVQDIAFDQSGKLLVSCSADM-----SLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT--------  213 (406)
Q Consensus       147 h~~~V~~l~~~~~g~~l~sgs~d~-----~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~--------  213 (406)
                      |...+.+++|+|||++|+.++.++     .|++||+.+++.......+ ..+.+++|+|||+.|+.++.++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence            444688999999999998776543     8999999999876543322 23678999999999999888876        


Q ss_pred             --------EEEEEcCCCeE----EEEeecCCccEEEEEECCCCCEEEEEeC-----CCeEEEEeCCC------cc-ceeE
Q psy226          214 --------IKMWEVATGYC----VKTLTGHREWVRQIKVSPDGTLLASCSN-----DHTARVWSLAT------KE-TKAE  269 (406)
Q Consensus       214 --------i~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~s~~~-----d~~v~vwd~~~------~~-~~~~  269 (406)
                              |++|++.++..    +.....|..++..+.|+|||++|+.++.     +..|++||+.+      +. ....
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                    99999988752    2222335667889999999999887765     67899999976      32 3455


Q ss_pred             EecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC----CcEEEEECCCCe--EEEEEeCCCc--CEEEEE
Q psy226          270 LRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD----KTIKLWDVGSGS--LLFTLIGHDN--WVRGVT  341 (406)
Q Consensus       270 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----~~i~lwd~~~~~--~~~~~~~h~~--~v~~l~  341 (406)
                      +..+...+.. .|+|                  +|..|+..+.+    ..|.+||+.++.  ....+..|..  .+..++
T Consensus       282 l~~~~~~~~~-~~s~------------------dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~  342 (710)
T 2xdw_A          282 LIDNFEGEYD-YVTN------------------EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA  342 (710)
T ss_dssp             EECSSSSCEE-EEEE------------------ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEE
T ss_pred             eeCCCCcEEE-EEec------------------cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEE
Confidence            5555544443 2444                  24445544443    369999998764  1234455543  688899


Q ss_pred             EcCCCCEEEEEeCCCe--EEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEe----eCCCeEEEeec
Q psy226          342 FHPGGKYLVSCGDDKT--LRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG----SVDKTVKVWEC  405 (406)
Q Consensus       342 ~s~~g~~l~sgs~d~~--i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sg----s~Dg~v~iw~~  405 (406)
                      |++++.++++...|+.  |++||+.+++.++.+..+...+..++++|++..|+..    ...++|.+||+
T Consensus       343 ~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  412 (710)
T 2xdw_A          343 CVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL  412 (710)
T ss_dssp             EETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred             EEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence            9988888899988885  5667876777777887777889999999998766532    23478888885

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.81  E-value=1.3e-18  Score=163.01  Aligned_cols=252  Identities=12%  Similarity=0.040  Sum_probs=174.0

Q ss_pred             EEEcCCCcEEEEecccccC-----eeeEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCC
Q psy226          132 LWDYETGEYERALHGHLDS-----VQDIAFDQSGKLLVSCSAD---MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSD  203 (406)
Q Consensus       132 vwd~~~~~~~~~~~~h~~~-----V~~l~~~~~g~~l~sgs~d---~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~  203 (406)
                      ..|..++.....+..+...     +.+++|+|+|++|+.+...   ..|.+||+.+++......++......+.|+|+|+
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~   93 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER   93 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence            4477777777776655433     7889999999998876543   3688889988876544333333333478999999


Q ss_pred             EEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEE-------------------EEECCCCCEEEEE-----eCCCeEEEE
Q psy226          204 FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQ-------------------IKVSPDGTLLASC-----SNDHTARVW  259 (406)
Q Consensus       204 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~-------------------l~~~~~~~~l~s~-----~~d~~v~vw  259 (406)
                      .|+.++.++.|.+||+.++........+..+...                   +.++|+++.++.+     ..+..|.+|
T Consensus        94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~  173 (396)
T 3c5m_A           94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV  173 (396)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred             EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence            9999999999999999988776666555554433                   3567888776654     456789999


Q ss_pred             eCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC------CcEEEEECCCCeEEEEEeCC
Q psy226          260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD------KTIKLWDVGSGSLLFTLIGH  333 (406)
Q Consensus       260 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~lwd~~~~~~~~~~~~h  333 (406)
                      |+.+++..... .+...+..+.|+|.                 ++..++..+.+      ..|.+||+..+... .+..+
T Consensus       174 d~~~g~~~~~~-~~~~~~~~~~~sp~-----------------dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~  234 (396)
T 3c5m_A          174 DIETGELEVIH-QDTAWLGHPIYRPF-----------------DDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEH  234 (396)
T ss_dssp             ETTTCCEEEEE-EESSCEEEEEEETT-----------------EEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCC
T ss_pred             ECCCCcEEeec-cCCcccccceECCC-----------------CCCEEEEEecCCCCCCCceEEEEECCCCcee-Eeecc
Confidence            99877654433 45667788888872                 13344444433      46888998765433 33333


Q ss_pred             --CcCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCccceeeccccceEEEEEEeC-CCCEEEEee----------
Q psy226          334 --DNWVRGVTFHPGGKYLVSCGDD-----KTLRVWDTANKRNMKTLEAHSHFVTSLDFHR-AHPYVVTGS----------  395 (406)
Q Consensus       334 --~~~v~~l~~s~~g~~l~sgs~d-----~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~-~~~~l~sgs----------  395 (406)
                        ...+..++|+|+|++|+.++.+     +.|++||+.+++...... ... .. +.|+| +++++++++          
T Consensus       235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~  311 (396)
T 3c5m_A          235 AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADA  311 (396)
T ss_dssp             CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC-------
T ss_pred             CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccc
Confidence              2358889999999988776543     559999998876433221 112 23 88999 999988765          


Q ss_pred             ------CCCeEEEeec
Q psy226          396 ------VDKTVKVWEC  405 (406)
Q Consensus       396 ------~Dg~v~iw~~  405 (406)
                            .++.|.+||+
T Consensus       312 ~~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNT  327 (396)
T ss_dssp             ---CCCCCCEEEEEET
T ss_pred             cccccCCCCcEEEEec
Confidence                  3478999985

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.81  E-value=6.6e-17  Score=145.70  Aligned_cols=241  Identities=13%  Similarity=0.134  Sum_probs=173.4

Q ss_pred             EEeccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          100 FALSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~-~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ..+..+.....+++|+|+++ +++++..++.|..||..++  ...+..+...+.+++++++|+++++...++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            34555666788999999998 8889999999999999887  45566677789999999999988887777899999997


Q ss_pred             CCeEEEEEecC----CcceEEEEEecCCCEEEEE----e-------------CCCcEEEEEcCCCeEEEEeecCCccEEE
Q psy226          179 TYQCLKTMQGH----DHNVTGVAFLPNSDFVLSA----S-------------RDKTIKMWEVATGYCVKTLTGHREWVRQ  237 (406)
Q Consensus       179 ~~~~~~~~~~h----~~~v~~~~~~p~~~~l~s~----s-------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~  237 (406)
                      +++........    ...+..++++|+|+++++.    +             ..+.|..++.. +. ...+..+......
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~g  176 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNG  176 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCcc
Confidence            77654333221    1245679999999988873    2             12345555544 43 3445566677889


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCC-Cccc---eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC
Q psy226          238 IKVSPDGTLLASCSNDHTARVWSLA-TKET---KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD  313 (406)
Q Consensus       238 l~~~~~~~~l~s~~~d~~v~vwd~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  313 (406)
                      ++|+|+|+.+++.+.++.|.+|++. .+..   ...+..+...+..+++.+                  +|.+.++.  +
T Consensus       177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~------------------~G~l~v~~--~  236 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA------------------GGLIWASA--G  236 (296)
T ss_dssp             EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT------------------TSCEEEEE--T
T ss_pred             EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC------------------CCCEEEEc--C
Confidence            9999999988888888999999986 3332   112222222333444444                  45555544  7


Q ss_pred             CcEEEEECCCCeEEEEEeCCCcCEEEEEE-cCCCCEEEEEeCCCeEEEEeCCCCc
Q psy226          314 KTIKLWDVGSGSLLFTLIGHDNWVRGVTF-HPGGKYLVSCGDDKTLRVWDTANKR  367 (406)
Q Consensus       314 ~~i~lwd~~~~~~~~~~~~h~~~v~~l~~-s~~g~~l~sgs~d~~i~vwd~~~~~  367 (406)
                      +.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.++ +..++..+.+
T Consensus       237 ~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~  288 (296)
T 3e5z_A          237 DGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRG  288 (296)
T ss_dssp             TEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCB
T ss_pred             CeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccc
Confidence            889999986 777778877777 899999 68999999888764 4445655543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.81  E-value=2.1e-17  Score=148.97  Aligned_cols=234  Identities=12%  Similarity=0.098  Sum_probs=174.7

Q ss_pred             EEecccccCeeeEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q psy226          142 RALHGHLDSVQDIAFDQSGK-LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA  220 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~-~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~  220 (406)
                      ..+..+.....+++|+|+|+ +++++..++.|..||..++  ...+..+...+.+++++|+++++++...++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            34444556678999999998 7788888999999999876  56666777889999999999988777777899999998


Q ss_pred             CCeEEEEeecC----CccEEEEEECCCCCEEEEE----e-------------CCCeEEEEeCCCccceeEEecCCceEEE
Q psy226          221 TGYCVKTLTGH----REWVRQIKVSPDGTLLASC----S-------------NDHTARVWSLATKETKAELRGHDHTVEC  279 (406)
Q Consensus       221 ~~~~~~~~~~~----~~~v~~l~~~~~~~~l~s~----~-------------~d~~v~vwd~~~~~~~~~~~~~~~~v~~  279 (406)
                      ++.........    ...+..++++|+|+++++.    +             ..+.|..++..  .....+..+......
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~~~~g  176 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRVKPNG  176 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCSSEEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCCCCCcc
Confidence            88754443221    1245679999999988873    2             13455555554  333444555566778


Q ss_pred             EEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC-CCeE---EEEEeCCCcCEEEEEEcCCCCEEEEEeCC
Q psy226          280 VAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG-SGSL---LFTLIGHDNWVRGVTFHPGGKYLVSCGDD  355 (406)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~-~~~~---~~~~~~h~~~v~~l~~s~~g~~l~sgs~d  355 (406)
                      ++|+|                  ++..+++.+.++.|.+||+. ++..   ...+..+...+.+++++++|+++++.  +
T Consensus       177 i~~s~------------------dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~  236 (296)
T 3e5z_A          177 LAFLP------------------SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--G  236 (296)
T ss_dssp             EEECT------------------TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--T
T ss_pred             EEECC------------------CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--C
Confidence            88887                  36667777788999999986 5554   23333355567789999999977766  7


Q ss_pred             CeEEEEeCCCCccceeeccccceEEEEEE-eCCCCEEEEeeCCCeEE
Q psy226          356 KTLRVWDTANKRNMKTLEAHSHFVTSLDF-HRAHPYVVTGSVDKTVK  401 (406)
Q Consensus       356 ~~i~vwd~~~~~~~~~l~~h~~~v~~l~~-~~~~~~l~sgs~Dg~v~  401 (406)
                      +.|.+||.. ++.+..+..+.. +++++| .|+++.|.+++.++..+
T Consensus       237 ~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          237 DGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWS  281 (296)
T ss_dssp             TEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred             CeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence            899999986 777777777776 899999 58999898888776444

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.80  E-value=3.5e-17  Score=145.22  Aligned_cols=242  Identities=8%  Similarity=-0.043  Sum_probs=172.5

Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          108 PVIKVIFHPVFSLMA-SCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       108 ~V~~v~~~p~~~~la-tgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      ...+++++|++++++ +.+.++.|.+||..++........+...+.+++++++|+++++.. ++.|.+||..+.......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            567899999999888 557889999999776554332233445788999999999666655 889999998765432221


Q ss_pred             ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc
Q psy226          187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET  266 (406)
Q Consensus       187 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~  266 (406)
                      ......+.++++.|+++++++...++.|.+|+..+.............+..++++++|+++++...++.|.+||......
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            12335688999999999877777788999998665543322223334578899999999888877889999999876544


Q ss_pred             eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCC
Q psy226          267 KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGG  346 (406)
Q Consensus       267 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g  346 (406)
                      ......+...+..+++.+                  +|.++++...++.|.+||............+...+.+++++|+|
T Consensus       184 ~~~~~~~~~~p~~i~~d~------------------~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g  245 (270)
T 1rwi_B          184 VVLPFTDITAPWGIAVDE------------------AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR  245 (270)
T ss_dssp             EECCCSSCCSEEEEEECT------------------TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC
T ss_pred             EeecccCCCCceEEEECC------------------CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC
Confidence            332223334566777766                  35566666678899999987654433222344678999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCCCcc
Q psy226          347 KYLVSCGDDKTLRVWDTANKRN  368 (406)
Q Consensus       347 ~~l~sgs~d~~i~vwd~~~~~~  368 (406)
                      +.+++.+.+++|++++....+.
T Consensus       246 ~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          246 TVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CEEEEEGGGTEEEEECCCGGGS
T ss_pred             CEEEEECCCCEEEEEcCCCccc
Confidence            9888888999999999876554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=5.5e-17  Score=149.41  Aligned_cols=233  Identities=12%  Similarity=0.163  Sum_probs=164.2

Q ss_pred             CCeEEEEEcCCCCEEEEEeCC---C--cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC------------
Q psy226          107 SPVIKVIFHPVFSLMASCSED---A--TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD------------  169 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~d---g--~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d------------  169 (406)
                      ..+..++|+|+|+.||.++.+   +  .|.+||+.+++.......+ . +.+++|+|+|+.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            467889999999999987754   3  3888898888765554443 3 9999999999999887643            


Q ss_pred             ---------------CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCC-------cEEEEEcCCCeEEEE
Q psy226          170 ---------------MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK-------TIKMWEVATGYCVKT  227 (406)
Q Consensus       170 ---------------~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-------~i~iwd~~~~~~~~~  227 (406)
                                     ..|.+||+.+++.+..+.. . .+..+.|+|+| ++++++.+.       ...+|.+.++.. ..
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~  212 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK  212 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence                           5789999998876455554 3 78899999999 877776652       445554445543 44


Q ss_pred             eecCCccEEEEEECCCCCEEEEEeCC--------CeEEEEeCCCccceeEEecCCceEEE-EEeCCCCCccccccccCCC
Q psy226          228 LTGHREWVRQIKVSPDGTLLASCSND--------HTARVWSLATKETKAELRGHDHTVEC-VAWAPGVASESISEAAGRP  298 (406)
Q Consensus       228 ~~~~~~~v~~l~~~~~~~~l~s~~~d--------~~v~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~  298 (406)
                      +..+ ..+..+  +|+|+.|+.++.+        ..|.+||  +++.......+...+.. +.|+ +             
T Consensus       213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-d-------------  273 (347)
T 2gop_A          213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-G-------------  273 (347)
T ss_dssp             EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-T-------------
T ss_pred             eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-C-------------
Confidence            4444 445444  9999998887754        3688888  44444334455667775 7775 3             


Q ss_pred             CCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeE-EEEeCCCCccceeecccc
Q psy226          299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTL-RVWDTANKRNMKTLEAHS  376 (406)
Q Consensus       299 ~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i-~vwd~~~~~~~~~l~~h~  376 (406)
                           + ++++++.++.++|| +.+++.. .+..+...|.+++|+|  .++++++.++.. .+|.+. ++ ...+..|.
T Consensus       274 -----g-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n  340 (347)
T 2gop_A          274 -----K-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYN  340 (347)
T ss_dssp             -----E-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTT
T ss_pred             -----c-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEecccc
Confidence                 4 78889999999999 8766654 4445577899999999  677777776654 677665 43 34454443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.79  E-value=3.2e-18  Score=172.76  Aligned_cols=241  Identities=7%  Similarity=-0.015  Sum_probs=171.3

Q ss_pred             cCCCCeEEEEEcCCCCEEE-----EEeCCCcEEEEEcCCCcEEEEecccccCe--eeEEECCCCCEEEEEeCCCc-----
Q psy226          104 GHRSPVIKVIFHPVFSLMA-----SCSEDATIRLWDYETGEYERALHGHLDSV--QDIAFDQSGKLLVSCSADMS-----  171 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~la-----tgs~dg~v~vwd~~~~~~~~~~~~h~~~V--~~l~~~~~g~~l~sgs~d~~-----  171 (406)
                      +|...+..++|||||++||     +|+.+.+|++||+.+++...  ..+...+  .+++|+|||+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            4666789999999999999     55556789999999987541  2233333  68999999999999998876     


Q ss_pred             --------EEEEeCCCCe----EEEEEecCCcceEEEEEecCCCEEEEEeCCC----cEEEEEcCCCeEEEEeecCCccE
Q psy226          172 --------LKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASRDK----TIKMWEVATGYCVKTLTGHREWV  235 (406)
Q Consensus       172 --------i~vwd~~~~~----~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~----~i~iwd~~~~~~~~~~~~~~~~v  235 (406)
                              |++|++.+++    ++.....|...+.++.|+|+|++|+.++.++    .|.+||..++. ...+..+...+
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~  274 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK  274 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence                    9999998765    3333344556788999999999888877665    67777765554 34455555555


Q ss_pred             EEEEECCCCCEEEEEe---CCCeEEEEeCCCccc--eeEEecC--CceEEEEEeCCCCCccccccccCCCCCCCCCCEEE
Q psy226          236 RQIKVSPDGTLLASCS---NDHTARVWSLATKET--KAELRGH--DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLA  308 (406)
Q Consensus       236 ~~l~~~~~~~~l~s~~---~d~~v~vwd~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  308 (406)
                      ....+ ++|.+++...   .++.|.+||+.++..  ...+..+  ...+..+.|.                   ++.+++
T Consensus       275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-------------------~~~lv~  334 (695)
T 2bkl_A          275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-------------------GGHLSL  334 (695)
T ss_dssp             EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-------------------TTEEEE
T ss_pred             EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-------------------CCEEEE
Confidence            55556 5666444443   258899999977653  2333333  4456777665                   255788


Q ss_pred             EEeCCCcEEEEECC-CCeEEEEEeCC-CcCEEEEEEcCCCCEEEEE-e---CCCeEEEEeCCCCc
Q psy226          309 TGSRDKTIKLWDVG-SGSLLFTLIGH-DNWVRGVTFHPGGKYLVSC-G---DDKTLRVWDTANKR  367 (406)
Q Consensus       309 s~~~d~~i~lwd~~-~~~~~~~~~~h-~~~v~~l~~s~~g~~l~sg-s---~d~~i~vwd~~~~~  367 (406)
                      +...|+..+||.+. +++....+..+ ...+..++++|+++.|+.. +   ..++|++||+.+++
T Consensus       335 ~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          335 EYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            88999988887654 46666666555 6678888999999876632 2   34789999998765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.79  E-value=2.2e-15  Score=135.35  Aligned_cols=280  Identities=10%  Similarity=0.020  Sum_probs=198.4

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE-ecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERA-LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~-~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      +.+......+.++++.+++.+.++...++.|.+||.. ++.... +..+...+.+++++++|.+.++...++.|..||..
T Consensus        13 ~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           13 FNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence            4444556678999999999988888888999999988 665442 33344678999999999988877778889999987


Q ss_pred             CCeEEE-EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEE-EeecCCccEEEEEECCCCCEEEEEeCCCeE
Q psy226          179 TYQCLK-TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVK-TLTGHREWVRQIKVSPDGTLLASCSNDHTA  256 (406)
Q Consensus       179 ~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v  256 (406)
                       ++... .+......+.++++.+++.++++...++.|..+|.. +.... .+......+..++++++|+++++...++.|
T Consensus        92 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i  169 (300)
T 2qc5_A           92 -GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI  169 (300)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred             -CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence             55432 222234678999999999888877778899999987 55442 233344568899999999977777778899


Q ss_pred             EEEeCCCccceeE-EecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEE-EeCCC
Q psy226          257 RVWSLATKETKAE-LRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFT-LIGHD  334 (406)
Q Consensus       257 ~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~-~~~h~  334 (406)
                      ..+|. ++..... +..+...+..+++.+                  ++.+.++....+.|.+||. ++..... +..+.
T Consensus       170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~------------------~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~  229 (300)
T 2qc5_A          170 GRITN-TGKLEEYPLPTNAAAPVGITSGN------------------DGALWFVEIMGNKIGRITT-TGEISEYDIPTPN  229 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECT------------------TSSEEEEETTTTEEEEECT-TCCEEEEECSSTT
T ss_pred             EEECC-CCcEEEeeCCCCCCCcceEEECC------------------CCCEEEEccCCCEEEEEcC-CCcEEEEECCCCC
Confidence            99998 4333221 112334456666665                  3555655556678999998 5554332 33455


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc-eeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNM-KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~-~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ..+.+++++++|+..++...++.|..||. +++.. ..+......+.++++++++.+.++.. . .|..+|.
T Consensus       230 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          230 ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            67899999999997777767799999998 34322 12232345678999999998777665 4 6776664

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.79  E-value=6.4e-18  Score=170.58  Aligned_cols=267  Identities=13%  Similarity=0.006  Sum_probs=180.8

Q ss_pred             CCCCEEEEEeCCC---c--EEEEEcCCCcEEEEec------ccccCeeeEEECCCCCEEE-----EEeCCCcEEEEeCCC
Q psy226          116 PVFSLMASCSEDA---T--IRLWDYETGEYERALH------GHLDSVQDIAFDQSGKLLV-----SCSADMSLKLWDMST  179 (406)
Q Consensus       116 p~~~~latgs~dg---~--v~vwd~~~~~~~~~~~------~h~~~V~~l~~~~~g~~l~-----sgs~d~~i~vwd~~~  179 (406)
                      |+|.+++-...++   .  +.+.+..+++....+.      +|...+.+++|||||++|+     .|+.+.+|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            5666666554433   2  3444444554333332      4555789999999999998     444557899999998


Q ss_pred             CeEEEEEecCCcce--EEEEEecCCCEEEEEeCCCc-------------EEEEEcCCCe----EEEEeecCCccEEEEEE
Q psy226          180 YQCLKTMQGHDHNV--TGVAFLPNSDFVLSASRDKT-------------IKMWEVATGY----CVKTLTGHREWVRQIKV  240 (406)
Q Consensus       180 ~~~~~~~~~h~~~v--~~~~~~p~~~~l~s~s~d~~-------------i~iwd~~~~~----~~~~~~~~~~~v~~l~~  240 (406)
                      ++.+.  ..+...+  .+++|+|+|+.|+.++.|..             |++|++.++.    .+.....|...+..+.|
T Consensus       157 g~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~  234 (695)
T 2bkl_A          157 GEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL  234 (695)
T ss_dssp             CCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE
T ss_pred             CCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE
Confidence            87541  1122222  67999999999999998876             9999998875    33333456678899999


Q ss_pred             CCCCCEEEEEeCCC----eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe---CC
Q psy226          241 SPDGTLLASCSNDH----TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS---RD  313 (406)
Q Consensus       241 ~~~~~~l~s~~~d~----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d  313 (406)
                      +|||++|+.++.++    .|.+|+..++. ...+..+...+....+ +                  ++.+++.+.   .+
T Consensus       235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~------------------~g~l~~~s~~~~~~  294 (695)
T 2bkl_A          235 SRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-W------------------KDRFYVLTDEGAPR  294 (695)
T ss_dssp             CTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-E------------------TTEEEEEECTTCTT
T ss_pred             CCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-c------------------CCcEEEEECCCCCC
Confidence            99999998887666    67777655443 3344444444444444 2                  133444443   25


Q ss_pred             CcEEEEECCCCeE--EEEEeC-C-CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCccceeeccc-cceEEEEEEeCC
Q psy226          314 KTIKLWDVGSGSL--LFTLIG-H-DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA-NKRNMKTLEAH-SHFVTSLDFHRA  387 (406)
Q Consensus       314 ~~i~lwd~~~~~~--~~~~~~-h-~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~-~~~~~~~l~~h-~~~v~~l~~~~~  387 (406)
                      +.|.+||+.++..  ...+.. + ...+..++|+ ++.++++...|+..+||.+. +++....+..+ ...|..++++|+
T Consensus       295 ~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d  373 (695)
T 2bkl_A          295 QRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLED  373 (695)
T ss_dssp             CEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTT
T ss_pred             CEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCC
Confidence            7899999987652  123333 3 4568888998 77888999999998888654 35555666554 667888999999


Q ss_pred             CCEEE----EeeCCCeEEEeec
Q psy226          388 HPYVV----TGSVDKTVKVWEC  405 (406)
Q Consensus       388 ~~~l~----sgs~Dg~v~iw~~  405 (406)
                      +..|+    +....++|.+||+
T Consensus       374 ~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          374 LDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             CSEEEEEEEETTEEEEEEEEET
T ss_pred             CCEEEEEEcCCCCCCEEEEEEC
Confidence            98776    3344578999986

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.79  E-value=1.5e-16  Score=145.70  Aligned_cols=256  Identities=13%  Similarity=0.052  Sum_probs=181.9

Q ss_pred             CCCcEEEEEcCCCcEEEEec------ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEe
Q psy226          126 EDATIRLWDYETGEYERALH------GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFL  199 (406)
Q Consensus       126 ~dg~v~vwd~~~~~~~~~~~------~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  199 (406)
                      .+++|.++|..+++....+.      .......++.+. ++++.++...++.|.+||..+++.+.++.. ......++++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~   92 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFL   92 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEe
Confidence            48999999999998765542      112346778874 345556666679999999999998888753 4568899999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCC-----ccEEEEEECCCCCEEEEEe-CCCeEEEEeCCCccceeEEecC
Q psy226          200 PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR-----EWVRQIKVSPDGTLLASCS-NDHTARVWSLATKETKAELRGH  273 (406)
Q Consensus       200 p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~  273 (406)
                      |++...++...++.|.+||..++.....+....     .....+++ .++.++++.. .++.|.++|+.+.+....+...
T Consensus        93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g  171 (328)
T 3dsm_A           93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG  171 (328)
T ss_dssp             ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred             CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence            998544444489999999999998877765433     14456777 4444455544 4899999999987766555432


Q ss_pred             CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC----------CcEEEEECCCCeEEEEEeCC-CcCEEEEEE
Q psy226          274 DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD----------KTIKLWDVGSGSLLFTLIGH-DNWVRGVTF  342 (406)
Q Consensus       274 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----------~~i~lwd~~~~~~~~~~~~h-~~~v~~l~~  342 (406)
                      . ....+.+.|                  +|.+++++..+          +.|.++|..+++....+.-. ......++|
T Consensus       172 ~-~p~~i~~~~------------------dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~  232 (328)
T 3dsm_A          172 I-QPTSLVMDK------------------YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL  232 (328)
T ss_dssp             S-CBCCCEECT------------------TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred             C-CccceEEcC------------------CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence            2 122334433                  45666665554          78999999999887666432 346899999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCcccee--eccccceEEEEEEeC-CCCEEEEe----eCCCeEEEeec
Q psy226          343 HPGGKYLVSCGDDKTLRVWDTANKRNMKT--LEAHSHFVTSLDFHR-AHPYVVTG----SVDKTVKVWEC  405 (406)
Q Consensus       343 s~~g~~l~sgs~d~~i~vwd~~~~~~~~~--l~~h~~~v~~l~~~~-~~~~l~sg----s~Dg~v~iw~~  405 (406)
                      +|++++|+++..  .|.+||..+++....  +.........++++| ++.+.++.    ..++.|.+||.
T Consensus       233 ~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          233 NGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             CTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             ecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence            999999887765  899999988775321  222245688999999 56666776    67899999985

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=1e-15  Score=140.13  Aligned_cols=235  Identities=14%  Similarity=0.130  Sum_probs=168.8

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC----CcEEEE
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD----MSLKLW  175 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d----~~i~vw  175 (406)
                      ..+.++...+.+++|+|++.+++++..++.|.+||..+++.......+...+.+++++++|+++++...+    +.|.+|
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~  117 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA  117 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEE
Confidence            3456677778999999999988899999999999999988766554566789999999999988887766    689999


Q ss_pred             eCCCCeEEEEEe--cCCcceEEEEEecCCCEEEEEeC------CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEE
Q psy226          176 DMSTYQCLKTMQ--GHDHNVTGVAFLPNSDFVLSASR------DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLL  247 (406)
Q Consensus       176 d~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  247 (406)
                      |..++.....+.  .+...+.+++++|+++++++...      .+.|..+|..++.... +..+...+..++|+|+|+.+
T Consensus       118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l  196 (333)
T 2dg1_A          118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVL  196 (333)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEE
T ss_pred             eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEE
Confidence            998776543332  23456899999999988776654      2456666665544333 32333457889999999865


Q ss_pred             -EEEeCCCeEEEEeCCC-ccceeEE--------ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEE
Q psy226          248 -ASCSNDHTARVWSLAT-KETKAEL--------RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIK  317 (406)
Q Consensus       248 -~s~~~d~~v~vwd~~~-~~~~~~~--------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  317 (406)
                       ++.+.++.|.+||+.+ +.....+        .++ ..+..+++.+                  +|.++++...++.|.
T Consensus       197 ~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~------------------~G~l~v~~~~~~~v~  257 (333)
T 2dg1_A          197 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS------------------DDNLYVAMYGQGRVL  257 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT------------------TCCEEEEEETTTEEE
T ss_pred             EEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECC------------------CCCEEEEEcCCCEEE
Confidence             4555688999999864 2222111        111 2455666655                  466777777788999


Q ss_pred             EEECCCCeEEEEEeCCCc------CEEEEEEcCCCCEEEEEeCC
Q psy226          318 LWDVGSGSLLFTLIGHDN------WVRGVTFHPGGKYLVSCGDD  355 (406)
Q Consensus       318 lwd~~~~~~~~~~~~h~~------~v~~l~~s~~g~~l~sgs~d  355 (406)
                      +||. +++.+..+..+..      .+.+++|+|+++.|+.++.+
T Consensus       258 ~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          258 VFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            9998 5666666654433      68999999998777655554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.78  E-value=9.5e-17  Score=142.37  Aligned_cols=237  Identities=9%  Similarity=0.008  Sum_probs=166.2

Q ss_pred             CeeeEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q psy226          150 SVQDIAFDQSGKLLV-SCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL  228 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~-sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~  228 (406)
                      ...+++++++|++.+ +.+.++.|.+||..+.........+...+.++++.|+++++++.. ++.|.+||..........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            677899999999777 446788999999765443222123335678899999998666655 889999998765433222


Q ss_pred             ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEE
Q psy226          229 TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLA  308 (406)
Q Consensus       229 ~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  308 (406)
                      ......+..++++|+|+++++...++.|.+|+..+.............+..+++.|                  ++.+++
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~------------------~g~l~v  165 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN------------------SGNVYV  165 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT------------------TCCEEE
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC------------------CCCEEE
Confidence            23335688999999999888888889999997654433221112222344555554                  356666


Q ss_pred             EEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCC
Q psy226          309 TGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAH  388 (406)
Q Consensus       309 s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~  388 (406)
                      +...++.|.+||............+...+.+++++++|..+++...++.|.+||............+...+.++++++++
T Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g  245 (270)
T 1rwi_B          166 TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR  245 (270)
T ss_dssp             EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTC
T ss_pred             EECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCC
Confidence            66678899999988766554433444678999999999888887788999999987654332222333568999999999


Q ss_pred             CEEEEeeCCCeEEEeec
Q psy226          389 PYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       389 ~~l~sgs~Dg~v~iw~~  405 (406)
                      .++++...++.|+++++
T Consensus       246 ~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          246 TVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             CEEEEEGGGTEEEEECC
T ss_pred             CEEEEECCCCEEEEEcC
Confidence            99999999999999986

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=1.5e-16  Score=147.56  Aligned_cols=243  Identities=10%  Similarity=0.097  Sum_probs=164.5

Q ss_pred             CCCEEEEEe------CCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEe----------CCCcEEEEEcCCC
Q psy226          159 SGKLLVSCS------ADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS----------RDKTIKMWEVATG  222 (406)
Q Consensus       159 ~g~~l~sgs------~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s----------~d~~i~iwd~~~~  222 (406)
                      +++++++..      .|+.|.+||..+++.+..+..+..+  .++|+|+++++++++          .+++|.+||..++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            556666553      3779999999999988888776655  899999999998876          3678999999998


Q ss_pred             eEEEEeecC------CccEEEEEECCCCCEEEEEeC--CCeEEEEeCCCccceeE-EecCCce---------EEEEEeCC
Q psy226          223 YCVKTLTGH------REWVRQIKVSPDGTLLASCSN--DHTARVWSLATKETKAE-LRGHDHT---------VECVAWAP  284 (406)
Q Consensus       223 ~~~~~~~~~------~~~v~~l~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~-~~~~~~~---------v~~~~~~~  284 (406)
                      +.+..+...      ......++++|+|++++++..  +++|.+||+.+.+.+.. +......         ..-+...+
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~  171 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICG  171 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEET
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECC
Confidence            888877532      234567999999999988864  68999999998876655 3221110         00011111


Q ss_pred             CCCcc--------ccc---------cccCCC---CCCCCCCEEEEEeCCCcEEEEECCCCeE--EEEEeC------CCcC
Q psy226          285 GVASE--------SIS---------EAAGRP---PGQGGGPYLATGSRDKTIKLWDVGSGSL--LFTLIG------HDNW  336 (406)
Q Consensus       285 ~~~~~--------~~~---------~~~~~~---~~~~~~~~l~s~~~d~~i~lwd~~~~~~--~~~~~~------h~~~  336 (406)
                      +....        ...         .....+   .....+..++..+.++.|.++|+..+..  ...+.-      +..+
T Consensus       172 dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~  251 (361)
T 2oiz_A          172 DGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNW  251 (361)
T ss_dssp             TSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTC
T ss_pred             CCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccc
Confidence            11000        000         000000   0012234556666788899999865432  222111      0111


Q ss_pred             ----EEEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEE
Q psy226          337 ----VRGVTFHPGGKYLVSCGD-----------DKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVK  401 (406)
Q Consensus       337 ----v~~l~~s~~g~~l~sgs~-----------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~  401 (406)
                          ...++|+|+++.++++..           .+.|.+||..+++.+.++..+.  +.+++|+|++++|++++. +.|.
T Consensus       252 ~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~  328 (361)
T 2oiz_A          252 VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVN  328 (361)
T ss_dssp             EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEE
T ss_pred             ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEE
Confidence                112789999888776543           3589999999999999998876  899999999999998886 9999


Q ss_pred             EeecC
Q psy226          402 VWECR  406 (406)
Q Consensus       402 iw~~~  406 (406)
                      +||..
T Consensus       329 v~D~~  333 (361)
T 2oiz_A          329 VYDIS  333 (361)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99963

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.78  E-value=3.3e-16  Score=139.51  Aligned_cols=213  Identities=14%  Similarity=0.086  Sum_probs=170.0

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEecccc-cCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-cceE
Q psy226          117 VFSLMASCSEDATIRLWDYETGEYERALHGHL-DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHD-HNVT  194 (406)
Q Consensus       117 ~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~-~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~-~~v~  194 (406)
                      .+++|++++.|+.|.+||.++|+.+..+..+. ..+.++.+.|+|++++  +.++.|..||. +++.+..+..+. ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            45789999999999999999999998888766 5789999999999888  45778999999 788888887653 5788


Q ss_pred             EEEEecCCCEEEEEeC-CCcEEEEEcCCCeEEEEeec------CCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccce
Q psy226          195 GVAFLPNSDFVLSASR-DKTIKMWEVATGYCVKTLTG------HREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETK  267 (406)
Q Consensus       195 ~~~~~p~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~------~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  267 (406)
                      ++.+.|+|+++++.+. ++.|..+|. +|+.+..+..      +..+...+++.++|+++++...++.|..||.. ++.+
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            9999999999999887 777877775 6777666541      22345567789999999999999999999987 7777


Q ss_pred             eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC------cCEEEEE
Q psy226          268 AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD------NWVRGVT  341 (406)
Q Consensus       268 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~------~~v~~l~  341 (406)
                      -.+..... +.++...+                  ++.++++++.++.|..+|..+|+.+.++..+.      ..+..+.
T Consensus       159 w~~~~~~~-~~~~~~~~------------------~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~  219 (276)
T 3no2_A          159 NSVKLSGT-PFSSAFLD------------------NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLF  219 (276)
T ss_dssp             EEEECSSC-CCEEEECT------------------TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEE
T ss_pred             EEEECCCC-ccceeEcC------------------CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccce
Confidence            66654322 22333333                  57788888888899999999999998886432      3478899


Q ss_pred             EcCCCCEEEEEe
Q psy226          342 FHPGGKYLVSCG  353 (406)
Q Consensus       342 ~s~~g~~l~sgs  353 (406)
                      ..++|..+++.+
T Consensus       220 ~~~~G~i~v~~~  231 (276)
T 3no2_A          220 PLQNGGLYICNW  231 (276)
T ss_dssp             ECTTSCEEEEEE
T ss_pred             EcCCCCEEEEec
Confidence            999999988874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.76  E-value=8.4e-15  Score=143.02  Aligned_cols=280  Identities=12%  Similarity=0.065  Sum_probs=198.1

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCcEEEEecccccCeeeEEEC----CCCCEEEEEeC-CCcEEEEeCCC
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYE--TGEYERALHGHLDSVQDIAFD----QSGKLLVSCSA-DMSLKLWDMST  179 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~--~~~~~~~~~~h~~~V~~l~~~----~~g~~l~sgs~-d~~i~vwd~~~  179 (406)
                      ..+..++|+|+++++++++.|+.|.+||+.  +++....+.... ....++|+    |+|+++++++. +++|.++|..+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            356789999999999999999999999995  777777776433 35789999    69998887765 58999999999


Q ss_pred             CeEEEEEecC-----------CcceEEEEEecCCCE-EEEEeCCCcEEEEEcCCCeE--EEEeecCCccEEEEEECCCCC
Q psy226          180 YQCLKTMQGH-----------DHNVTGVAFLPNSDF-VLSASRDKTIKMWEVATGYC--VKTLTGHREWVRQIKVSPDGT  245 (406)
Q Consensus       180 ~~~~~~~~~h-----------~~~v~~~~~~p~~~~-l~s~s~d~~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~  245 (406)
                      .+.++.+...           ...+..+.+++++.. ++....+|.|.++|..+...  +..+ ........+.|+|+|+
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr  354 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHR  354 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSC
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCC
Confidence            9888776521           125778888887664 45556679999999876532  2222 2344577889999999


Q ss_pred             EEEEEe-CCCeEEEEeCCCccceeEEec-CC--ceEEEEE-eCCCCCccccccccCCCCCCCCCCEEEEEe-CCCcEEEE
Q psy226          246 LLASCS-NDHTARVWSLATKETKAELRG-HD--HTVECVA-WAPGVASESISEAAGRPPGQGGGPYLATGS-RDKTIKLW  319 (406)
Q Consensus       246 ~l~s~~-~d~~v~vwd~~~~~~~~~~~~-~~--~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~lw  319 (406)
                      +++++. .++.|.++|+.+.+....+.. ..  ++-.... +.|+                 .+...+++. .++.|.++
T Consensus       355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~-----------------~g~v~~t~~~g~~~Vsvi  417 (567)
T 1qks_A          355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-----------------FGPVWATSHMGDDSVALI  417 (567)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-----------------TEEEEEEEBSSSSEEEEE
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCC-----------------CCcEEEeCCCCCCeEEEe
Confidence            886655 689999999998776544432 11  0000111 2221                 244555554 46899999


Q ss_pred             ECCC-------CeEEEEEeCCCcCEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCC-----c-cceeec------
Q psy226          320 DVGS-------GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD-------DKTLRVWDTANK-----R-NMKTLE------  373 (406)
Q Consensus       320 d~~~-------~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~-------d~~i~vwd~~~~-----~-~~~~l~------  373 (406)
                      |..+       .+.+.++......-..+.++|++++|.+...       ..+|.|+|+.+.     . .+..+.      
T Consensus       418 d~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~  497 (567)
T 1qks_A          418 GTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAG  497 (567)
T ss_dssp             ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHT
T ss_pred             cCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccc
Confidence            9987       5677777765443345778999999987653       359999999876     2 112332      


Q ss_pred             --cccceEEEEEEeCCCCEEEEee-----CCCeEEEeec
Q psy226          374 --AHSHFVTSLDFHRAHPYVVTGS-----VDKTVKVWEC  405 (406)
Q Consensus       374 --~h~~~v~~l~~~~~~~~l~sgs-----~Dg~v~iw~~  405 (406)
                        .-...+..+.|+|+|..+..+.     .++.|.++|.
T Consensus       498 ~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~  536 (567)
T 1qks_A          498 ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  536 (567)
T ss_dssp             CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             cCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence              1134688999999999876653     3789999885

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.75  E-value=1.2e-15  Score=135.91  Aligned_cols=219  Identities=17%  Similarity=0.164  Sum_probs=167.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCC-cceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC-CccEE
Q psy226          159 SGKLLVSCSADMSLKLWDMSTYQCLKTMQGHD-HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH-REWVR  236 (406)
Q Consensus       159 ~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~~v~  236 (406)
                      .+++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|++++  +.++.|..||. +|+.+..+..+ ...+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            46889999999999999999999999988776 4788999999999888  45788999998 89988888865 35788


Q ss_pred             EEEECCCCCEEEEEeC-CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCc
Q psy226          237 QIKVSPDGTLLASCSN-DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT  315 (406)
Q Consensus       237 ~l~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  315 (406)
                      ++.+.|+|+++++.+. ++.+..+|. .++.+..+..          .........  .........+|.++++.+.++.
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~----------~~~~~~~~~--~~~~v~~~~~G~~lv~~~~~~~  147 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEF----------ETGIERPHA--QFRQINKNKKGNYLVPLFATSE  147 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEE----------CCSCSSGGG--SCSCCEECTTSCEEEEETTTTE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEec----------cCCCCcccc--cccCceECCCCCEEEEecCCCE
Confidence            8999999999999887 777877775 4444433321          110000000  0000011236789999999999


Q ss_pred             EEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecccc------ceEEEEEEeCCCC
Q psy226          316 IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS------HFVTSLDFHRAHP  389 (406)
Q Consensus       316 i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~------~~v~~l~~~~~~~  389 (406)
                      |..||.. |+.+.++... ..+.++.+.++|+.+++++.+++|..+|..+++.+-++..+.      ..+..++..+++.
T Consensus       148 v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~  225 (276)
T 3no2_A          148 VREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG  225 (276)
T ss_dssp             EEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred             EEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC
Confidence            9999997 9999888764 345677889999999999999999999999898877775332      3488899999999


Q ss_pred             EEEEee
Q psy226          390 YVVTGS  395 (406)
Q Consensus       390 ~l~sgs  395 (406)
                      ++++..
T Consensus       226 i~v~~~  231 (276)
T 3no2_A          226 LYICNW  231 (276)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            888773

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.75  E-value=6.1e-15  Score=143.98  Aligned_cols=269  Identities=13%  Similarity=0.081  Sum_probs=193.5

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEecCCcce
Q psy226          116 PVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS--TYQCLKTMQGHDHNV  193 (406)
Q Consensus       116 p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~--~~~~~~~~~~h~~~v  193 (406)
                      |.+.++++...+++|.++|..+++....+... ..+..+.|+|+|+++++++.|+.|.+||+.  +++.+..+.... ..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P  242 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA  242 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence            44567788889999999999999988877632 356789999999999999999999999995  778777776543 45


Q ss_pred             EEEEEe----cCCCEEEEEeC-CCcEEEEEcCCCeEEEEeec----------CCc-cEEEEEECCCCCE-EEEEeCCCeE
Q psy226          194 TGVAFL----PNSDFVLSASR-DKTIKMWEVATGYCVKTLTG----------HRE-WVRQIKVSPDGTL-LASCSNDHTA  256 (406)
Q Consensus       194 ~~~~~~----p~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~----------~~~-~v~~l~~~~~~~~-l~s~~~d~~v  256 (406)
                      ..++|+    |+|+++++++. +++|.++|..+.+.++.+..          |.. .+..+..++++.. +++...+|.|
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v  322 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  322 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence            789999    69998877654 58999999999988877642          222 5778888888655 4555677999


Q ss_pred             EEEeCCCccceeE-EecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe-CCCcEEEEECCCCeEEEEEeC--
Q psy226          257 RVWSLATKETKAE-LRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS-RDKTIKLWDVGSGSLLFTLIG--  332 (406)
Q Consensus       257 ~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~lwd~~~~~~~~~~~~--  332 (406)
                      .++|......... ..........+.|+|                  +++++++++ .++.|.++|+.+++.+..+.-  
T Consensus       323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~p------------------dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg  384 (567)
T 1qks_A          323 LLVDYTDLNNLKTTEISAERFLHDGGLDG------------------SHRYFITAANARNKLVVIDTKEGKLVAIEDTGG  384 (567)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECT------------------TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEecCCCccceeeeeeccccccCceECC------------------CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC
Confidence            9999876432211 111223345667776                  466665555 678999999999988766543  


Q ss_pred             ---CCcCEEEEEEcCCCCEE-EEEe-CCCeEEEEeCCC-------CccceeeccccceEEEEEEeCCCCEEEEeeC----
Q psy226          333 ---HDNWVRGVTFHPGGKYL-VSCG-DDKTLRVWDTAN-------KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSV----  396 (406)
Q Consensus       333 ---h~~~v~~l~~s~~g~~l-~sgs-~d~~i~vwd~~~-------~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~----  396 (406)
                         |.+.-..+ ++|++..+ +++. .+++|.++|..+       .+.++++......-.-+..||++++|.+...    
T Consensus       385 ~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~  463 (567)
T 1qks_A          385 QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPE  463 (567)
T ss_dssp             SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSS
T ss_pred             cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCC
Confidence               43222222 68875544 4443 468999999987       4566776654332234668999999877552    


Q ss_pred             ---CCeEEEeec
Q psy226          397 ---DKTVKVWEC  405 (406)
Q Consensus       397 ---Dg~v~iw~~  405 (406)
                         ..+|.++|.
T Consensus       464 ~~~~~~v~v~d~  475 (567)
T 1qks_A          464 AEISGSVAVFDI  475 (567)
T ss_dssp             HHHHTCEEEEEG
T ss_pred             cccCceEEEEEC
Confidence               358999885

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.74  E-value=6.7e-16  Score=156.95  Aligned_cols=268  Identities=15%  Similarity=0.047  Sum_probs=176.8

Q ss_pred             CCCCEEEEEeCCCc---EEEEE--cC---CCcEEEEe------cccccCeeeEEECCCCCEEEEEeCC-----CcEEEEe
Q psy226          116 PVFSLMASCSEDAT---IRLWD--YE---TGEYERAL------HGHLDSVQDIAFDQSGKLLVSCSAD-----MSLKLWD  176 (406)
Q Consensus       116 p~~~~latgs~dg~---v~vwd--~~---~~~~~~~~------~~h~~~V~~l~~~~~g~~l~sgs~d-----~~i~vwd  176 (406)
                      |+|.+++-...++.   -.+|-  ..   +++....+      .+|...+.+++|+|||++|+.++.+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            77877776554433   44554  33   34333322      2344468899999999999887654     4699999


Q ss_pred             CCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCc--------------EEEEEcCCCe----EEEEeecCCccEEEE
Q psy226          177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT--------------IKMWEVATGY----CVKTLTGHREWVRQI  238 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~--------------i~iwd~~~~~----~~~~~~~~~~~v~~l  238 (406)
                      +.+++.+.. ..+...+..++|+|+ +.|+.++.|+.              |++|++.++.    .+.....+..++..+
T Consensus       196 l~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          196 VADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             TTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             CCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            999887543 222223457899999 98888887654              8899997765    222222344468899


Q ss_pred             EECCCCCEEEEEeCCC-----eEEEEeCCCc--cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe
Q psy226          239 KVSPDGTLLASCSNDH-----TARVWSLATK--ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS  311 (406)
Q Consensus       239 ~~~~~~~~l~s~~~d~-----~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  311 (406)
                      .|+|||++|+..+.++     .|++||+.++  .....+..+...+....+ |                  +|..|+..+
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~------------------dg~~l~~~s  334 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD-G------------------VGDQLWFVS  334 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE-E------------------ETTEEEEEE
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe-c------------------cCCEEEEEE
Confidence            9999999988877544     8999999775  313444444433333322 3                  355666666


Q ss_pred             CC----CcEEEEECCCC--eEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCccceeecc-ccceEEEEE
Q psy226          312 RD----KTIKLWDVGSG--SLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA-NKRNMKTLEA-HSHFVTSLD  383 (406)
Q Consensus       312 ~d----~~i~lwd~~~~--~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~-~~~~~~~l~~-h~~~v~~l~  383 (406)
                      .+    +.|.+||+.++  .....+..+...+..++|+ ++.++++...|+..+||.+. ++...+.+.. +...+..++
T Consensus       335 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~  413 (741)
T 1yr2_A          335 GDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLS  413 (741)
T ss_dssp             CTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEE
T ss_pred             CCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEee
Confidence            53    45999999875  3333344555567778887 66788888999988777554 3555566654 356789999


Q ss_pred             EeCCCCEEE----EeeCCCeEEEeec
Q psy226          384 FHRAHPYVV----TGSVDKTVKVWEC  405 (406)
Q Consensus       384 ~~~~~~~l~----sgs~Dg~v~iw~~  405 (406)
                      ++|++..|+    +....++|.+||+
T Consensus       414 ~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          414 GRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             CCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             cCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            999988665    3334578888885

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.72  E-value=1.4e-14  Score=131.31  Aligned_cols=237  Identities=11%  Similarity=0.113  Sum_probs=166.1

Q ss_pred             cccCeeeEEECCCCCEEEE-------EeCCCcEEEEeCCCCeEEEEEe----cCCcceEEEEEecC-CCEEEEEeCCCcE
Q psy226          147 HLDSVQDIAFDQSGKLLVS-------CSADMSLKLWDMSTYQCLKTMQ----GHDHNVTGVAFLPN-SDFVLSASRDKTI  214 (406)
Q Consensus       147 h~~~V~~l~~~~~g~~l~s-------gs~d~~i~vwd~~~~~~~~~~~----~h~~~v~~~~~~p~-~~~l~s~s~d~~i  214 (406)
                      ......+++|+++|.++++       +..++.|.+||..+++......    ++...+.+++++++ ++++++ +..+.|
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l   94 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGL   94 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCE
Confidence            3445678999999988877       5778899999988776543221    24467889999998 654444 445579


Q ss_pred             EEEEcCCCeEEEE-eec----CCccEEEEEECCCCCEEEEEeCC---------------CeEEEEeCCCccceeEEecCC
Q psy226          215 KMWEVATGYCVKT-LTG----HREWVRQIKVSPDGTLLASCSND---------------HTARVWSLATKETKAELRGHD  274 (406)
Q Consensus       215 ~iwd~~~~~~~~~-~~~----~~~~v~~l~~~~~~~~l~s~~~d---------------~~v~vwd~~~~~~~~~~~~~~  274 (406)
                      .+||.. +..... ...    ....+..++++++|+++++...+               +.|..||.. ++.. .+..+.
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~  171 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAF  171 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEE
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-EeccCC
Confidence            999988 654332 211    12357899999999988877655               567777765 3322 222222


Q ss_pred             ceEEEEEeC----CCCCccccccccCCCCCCCCCCEE-EEEeCCCcEEEEECC-CCe-----EEEEEeCCC-cCEEEEEE
Q psy226          275 HTVECVAWA----PGVASESISEAAGRPPGQGGGPYL-ATGSRDKTIKLWDVG-SGS-----LLFTLIGHD-NWVRGVTF  342 (406)
Q Consensus       275 ~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~lwd~~-~~~-----~~~~~~~h~-~~v~~l~~  342 (406)
                      .....++++    |                  ++..+ ++...++.|.+||.. ++.     ....+.++. ..+..+++
T Consensus       172 ~~~~~i~~~~~~d~------------------dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~  233 (314)
T 1pjx_A          172 QFPNGIAVRHMNDG------------------RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF  233 (314)
T ss_dssp             SSEEEEEEEECTTS------------------CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred             CCcceEEEecccCC------------------CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence            334566666    5                  34344 444567899999976 454     223344444 56889999


Q ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCE-EEEeeCCCeEEEeec
Q psy226          343 HPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPY-VVTGSVDKTVKVWEC  405 (406)
Q Consensus       343 s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~-l~sgs~Dg~v~iw~~  405 (406)
                      +++|+++++...++.|.+||..+++.+..+..+...+.+++|+|++.. .++...++.|..|+.
T Consensus       234 d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          234 DEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             BTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            999999888888899999999877777777767678999999999994 455566788988875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.72  E-value=1e-13  Score=128.75  Aligned_cols=265  Identities=9%  Similarity=-0.013  Sum_probs=179.4

Q ss_pred             cCCCCEEEEEeC--CC---cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe----------CCCcEEEEeCCC
Q psy226          115 HPVFSLMASCSE--DA---TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS----------ADMSLKLWDMST  179 (406)
Q Consensus       115 ~p~~~~latgs~--dg---~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs----------~d~~i~vwd~~~  179 (406)
                      .|++..+.+...  .+   +|.++|..+++....+.....+  .++++|||++|+++.          .++.|.+||..+
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            356665555543  22   8899999999988877654444  999999999999886          367899999998


Q ss_pred             CeEEEEEecC-------CcceEEEEEecCCCEEEEEeC--CCcEEEEEcCCCeEEEE-eecCCccEEEEEECCCC-CEEE
Q psy226          180 YQCLKTMQGH-------DHNVTGVAFLPNSDFVLSASR--DKTIKMWEVATGYCVKT-LTGHREWVRQIKVSPDG-TLLA  248 (406)
Q Consensus       180 ~~~~~~~~~h-------~~~v~~~~~~p~~~~l~s~s~--d~~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~-~~l~  248 (406)
                      ++.+..+...       ...-..+.|+|+|++|++++.  ++.|.++| .+++.+.. +....    ++.+.|++ ..++
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~  181 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFY  181 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEE
Confidence            8877665432       123457899999999998874  57899999 99988777 54321    23445554 4567


Q ss_pred             EEeCCCeEEEEeCCCccceeEEec-----CCceE-EEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC
Q psy226          249 SCSNDHTARVWSLATKETKAELRG-----HDHTV-ECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG  322 (406)
Q Consensus       249 s~~~d~~v~vwd~~~~~~~~~~~~-----~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~  322 (406)
                      +.+.||.+.++|. +++.......     ...++ ....+.+                 .++.++++ +.++.+.+.|+.
T Consensus       182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~-----------------~~~~~~~~-~~~~~v~vid~~  242 (373)
T 2mad_H          182 LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN-----------------KSGRIVWP-VYSGKILQADIS  242 (373)
T ss_pred             EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe-----------------cCCEEEEE-cCCceEEEEecc
Confidence            7788999999999 6654422110     00000 0011111                 12233333 367889999986


Q ss_pred             CCe--EEEEEeC----------CCcCEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCccceeeccccceEE
Q psy226          323 SGS--LLFTLIG----------HDNWVRGVTFHPGGKYLVSCGD----------DKTLRVWDTANKRNMKTLEAHSHFVT  380 (406)
Q Consensus       323 ~~~--~~~~~~~----------h~~~v~~l~~s~~g~~l~sgs~----------d~~i~vwd~~~~~~~~~l~~h~~~v~  380 (406)
                      .+.  .+..+.-          .......+.++|+++.++.+..          ++.|.++|..+++.++++..- ....
T Consensus       243 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~  321 (373)
T 2mad_H          243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVD  321 (373)
T ss_pred             CCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcC
Confidence            542  2222210          1122445789999998877653          358999999999998888543 3578


Q ss_pred             EEEEeCCCC-EEEEee-CCCeEEEeecC
Q psy226          381 SLDFHRAHP-YVVTGS-VDKTVKVWECR  406 (406)
Q Consensus       381 ~l~~~~~~~-~l~sgs-~Dg~v~iw~~~  406 (406)
                      .++|+|+++ +++++. .++.|.+||..
T Consensus       322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          322 AISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             eEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            999999999 777776 58999999963

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.72  E-value=9.5e-15  Score=133.62  Aligned_cols=249  Identities=12%  Similarity=0.021  Sum_probs=178.5

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQG  188 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~  188 (406)
                      ...+++. .+.++++...++.|.+||..+++....+. .......++++++++..++...++.|.+||..+++....+..
T Consensus        46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~  123 (328)
T 3dsm_A           46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC  123 (328)
T ss_dssp             EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence            4566664 35566677778999999999999888775 346788999988885444444889999999999988777654


Q ss_pred             CC-----cceEEEEEecCCCEEEEEe--CCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCC--------
Q psy226          189 HD-----HNVTGVAFLPNSDFVLSAS--RDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSND--------  253 (406)
Q Consensus       189 h~-----~~v~~~~~~p~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d--------  253 (406)
                      ..     .....+++ . ++.++++.  .+++|.++|..++..+..+.... ....++++|+|++++++..+        
T Consensus       124 g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~  200 (328)
T 3dsm_A          124 PDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGY  200 (328)
T ss_dssp             TTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred             CCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCcccc
Confidence            33     14456777 3 44555544  48899999999998887776433 34678899999988777665        


Q ss_pred             --CeEEEEeCCCccceeEEecC-CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE-E
Q psy226          254 --HTARVWSLATKETKAELRGH-DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF-T  329 (406)
Q Consensus       254 --~~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~-~  329 (406)
                        +.|.++|..+.+....+... ......++++|+                  +..++++..  .|.+||..+++... .
T Consensus       201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d------------------~~~lyv~~~--~v~~~d~~t~~~~~~~  260 (328)
T 3dsm_A          201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT------------------RDTLYWINN--DIWRMPVEADRVPVRP  260 (328)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT------------------SCEEEEESS--SEEEEETTCSSCCSSC
T ss_pred             CCceEEEEECCCCeEEEEEecCCCCCceeEEEecC------------------CCEEEEEcc--EEEEEECCCCceeeee
Confidence              79999999887765555422 235677888873                  556666544  89999998877532 1


Q ss_pred             -EeCCCcCEEEEEEcC-CCCEEEEE----eCCCeEEEEeCCCCccceeeccccceEEEEEE
Q psy226          330 -LIGHDNWVRGVTFHP-GGKYLVSC----GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF  384 (406)
Q Consensus       330 -~~~h~~~v~~l~~s~-~g~~l~sg----s~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~  384 (406)
                       +..+.....+++++| ++...++.    ..++.|.+||.. ++.+.++..- ..-..++|
T Consensus       261 ~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~  319 (328)
T 3dsm_A          261 FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW  319 (328)
T ss_dssp             SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred             eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence             111245688999999 55666666    678999999998 8888877542 23455555

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.71  E-value=1.5e-15  Score=154.46  Aligned_cols=242  Identities=15%  Similarity=0.096  Sum_probs=166.7

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCc-------
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSED-----ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMS-------  171 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~d-----g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~-------  171 (406)
                      +|...+..++|||||++||.++.+     .+|++||+.+++.... ..+...+.+++|+|| +.|+.++.|+.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            344468889999999999877654     3599999999987543 212223468999999 99988887654       


Q ss_pred             -------EEEEeCCCCeE--EEEEe--cCCcceEEEEEecCCCEEEEEeCCC-----cEEEEEcCCC--eEEEEeecCCc
Q psy226          172 -------LKLWDMSTYQC--LKTMQ--GHDHNVTGVAFLPNSDFVLSASRDK-----TIKMWEVATG--YCVKTLTGHRE  233 (406)
Q Consensus       172 -------i~vwd~~~~~~--~~~~~--~h~~~v~~~~~~p~~~~l~s~s~d~-----~i~iwd~~~~--~~~~~~~~~~~  233 (406)
                             |++|++.+++.  ...+.  .+...+.++.|+|+|++|+..+.++     .|.+||+.++  .+...+..+..
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  317 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK  317 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence                   88999876541  22222  2333588999999999888777544     8999999877  31455555555


Q ss_pred             cEEEEEECCCCCEEEEEeCC----CeEEEEeCCCc--cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEE
Q psy226          234 WVRQIKVSPDGTLLASCSND----HTARVWSLATK--ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYL  307 (406)
Q Consensus       234 ~v~~l~~~~~~~~l~s~~~d----~~v~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  307 (406)
                      .+.... +|+|..|+..+.+    +.|.+||+.+.  .....+..+...+..+.+.                   ++.++
T Consensus       318 ~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-------------------~~~lv  377 (741)
T 1yr2_A          318 AQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-------------------GNRLF  377 (741)
T ss_dssp             SCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-------------------BTEEE
T ss_pred             ceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-------------------CCEEE
Confidence            454443 4899988887764    45999998774  2233344444555566554                   24578


Q ss_pred             EEEeCCCcEEEEECC-CCeEEEEEeC-CCcCEEEEEEcCCCCEEE-EEe---CCCeEEEEeCCCCc
Q psy226          308 ATGSRDKTIKLWDVG-SGSLLFTLIG-HDNWVRGVTFHPGGKYLV-SCG---DDKTLRVWDTANKR  367 (406)
Q Consensus       308 ~s~~~d~~i~lwd~~-~~~~~~~~~~-h~~~v~~l~~s~~g~~l~-sgs---~d~~i~vwd~~~~~  367 (406)
                      ++...|+..+||.+. ++.....+.. +...+..++++|+++.|+ +.+   ..++|++||+.+++
T Consensus       378 ~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          378 ASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            888889987777543 4566666654 356789999999987655 322   34789999998765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.71  E-value=2.3e-14  Score=129.73  Aligned_cols=242  Identities=10%  Similarity=0.106  Sum_probs=169.0

Q ss_pred             eccCCCCeEEEEEcCCCCEEEE-------EeCCCcEEEEEcCCCcEEEEec----ccccCeeeEEECCC-CCEEEEEeCC
Q psy226          102 LSGHRSPVIKVIFHPVFSLMAS-------CSEDATIRLWDYETGEYERALH----GHLDSVQDIAFDQS-GKLLVSCSAD  169 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~lat-------gs~dg~v~vwd~~~~~~~~~~~----~h~~~V~~l~~~~~-g~~l~sgs~d  169 (406)
                      +...-....+++|++++.++++       +..++.|.+||..+++......    ++...+.+++++++ |+++++.. .
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~   91 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-R   91 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-T
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-C
Confidence            3444455678999999998888       6788999999988887654332    25567899999999 66555544 4


Q ss_pred             CcEEEEeCCCCeEEEE-Eec----CCcceEEEEEecCCCEEEEEeCC---------------CcEEEEEcCCCeEEEEee
Q psy226          170 MSLKLWDMSTYQCLKT-MQG----HDHNVTGVAFLPNSDFVLSASRD---------------KTIKMWEVATGYCVKTLT  229 (406)
Q Consensus       170 ~~i~vwd~~~~~~~~~-~~~----h~~~v~~~~~~p~~~~l~s~s~d---------------~~i~iwd~~~~~~~~~~~  229 (406)
                      ..|.+||.. ++.... ...    ....+.++++.|+++++++...+               +.|..||.. +.... +.
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~  168 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VD  168 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EE
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-ec
Confidence            478899988 664332 211    12357899999999887776655               567777765 54433 22


Q ss_pred             cCCccEEEEEEC----CCCCEE-EEEeCCCeEEEEeCC-Ccc-----ceeEEecCC-ceEEEEEeCCCCCccccccccCC
Q psy226          230 GHREWVRQIKVS----PDGTLL-ASCSNDHTARVWSLA-TKE-----TKAELRGHD-HTVECVAWAPGVASESISEAAGR  297 (406)
Q Consensus       230 ~~~~~v~~l~~~----~~~~~l-~s~~~d~~v~vwd~~-~~~-----~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~  297 (406)
                      .+......++++    |+++.+ ++...++.|.+||+. .+.     ....+..+. ..+..+++.+             
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-------------  235 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-------------  235 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-------------
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-------------
Confidence            333456789999    999655 444578999999976 222     111222232 4456666665             


Q ss_pred             CCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCC
Q psy226          298 PPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLV-SCGDDKTLRVWDTAN  365 (406)
Q Consensus       298 ~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~-sgs~d~~i~vwd~~~  365 (406)
                           +|.++++...++.|.+||..+++.+..+..+...+.+++|+|+|+.|+ +...++.|..|+...
T Consensus       236 -----~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          236 -----DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             -----TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             -----CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence                 466777777888999999987776666666767899999999999555 455668999999864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=1.3e-13  Score=123.73  Aligned_cols=239  Identities=9%  Similarity=-0.007  Sum_probs=171.9

Q ss_pred             cccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe
Q psy226          145 HGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM-QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY  223 (406)
Q Consensus       145 ~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~  223 (406)
                      ..+...+.+++++++|++.++...++.|.+||.. ++..... ..+...+.++++.+++.++++...++.|..||.....
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~   89 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGII   89 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred             CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcE
Confidence            3455678999999999988877668899999988 5433222 2345678999999999988877778899999976322


Q ss_pred             EEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeE-EecCCceEEEEEeCCCCCccccccccCCCCCCC
Q psy226          224 CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAE-LRGHDHTVECVAWAPGVASESISEAAGRPPGQG  302 (406)
Q Consensus       224 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  302 (406)
                      ....+......+..++++++|.++++...++.|.+||. ++..... .......+..+++.+                  
T Consensus        90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~------------------  150 (299)
T 2z2n_A           90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS------------------  150 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT------------------
T ss_pred             EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC------------------
Confidence            12222224557889999999998888878899999998 4333221 222334566777665                  


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEE-EeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccce-eeccccceEE
Q psy226          303 GGPYLATGSRDKTIKLWDVGSGSLLFT-LIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMK-TLEAHSHFVT  380 (406)
Q Consensus       303 ~~~~l~s~~~d~~i~lwd~~~~~~~~~-~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~-~l~~h~~~v~  380 (406)
                      ++.+.++...++.|..||. +++.... +..+...+.+++++++|+..++...++.|.+||. +++... .+..+...+.
T Consensus       151 ~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~  228 (299)
T 2z2n_A          151 DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPH  228 (299)
T ss_dssp             TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred             CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCce
Confidence            3556666666789999999 6665432 3344567889999999998777777889999998 555322 1233445789


Q ss_pred             EEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          381 SLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       381 ~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ++++++++.+.++...++.|..||.
T Consensus       229 ~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          229 AITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EEEECSTTCEEEEETTTTEEEEEET
T ss_pred             eEEECCCCCEEEeccCCceEEEECC
Confidence            9999999998777767888988874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.67  E-value=3.5e-14  Score=130.62  Aligned_cols=273  Identities=13%  Similarity=0.103  Sum_probs=185.5

Q ss_pred             EEcCCCCEEEEEeC-----CCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe----------CCCcEEEEeC
Q psy226          113 IFHPVFSLMASCSE-----DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS----------ADMSLKLWDM  177 (406)
Q Consensus       113 ~~~p~~~~latgs~-----dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs----------~d~~i~vwd~  177 (406)
                      ...|++..++....     ++.|.+.|..+++....+.....+  .++++|+|+++++++          .++.|.+||.
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~  116 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP  116 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence            34577777776655     689999999999998888755455  499999999888775          3678999999


Q ss_pred             CCCeEEEEEecCC-------cceEEEEEecCCCEEEEEeC--CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEE
Q psy226          178 STYQCLKTMQGHD-------HNVTGVAFLPNSDFVLSASR--DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLA  248 (406)
Q Consensus       178 ~~~~~~~~~~~h~-------~~v~~~~~~p~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  248 (406)
                      .+++.+.++....       ..-..+.|+|+|++++++..  +++|.++|+.+++.+.++.....   ...+....+.++
T Consensus       117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~  193 (386)
T 3sjl_D          117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFF  193 (386)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEE
T ss_pred             CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeE
Confidence            9999888775321       23456899999999888764  68999999999998888753221   122333456777


Q ss_pred             EEeCCCeEEEEeCCC-ccceeEEecCCceEEEEEeCCCCCccccccccCCCCC-CCCCCEEEEEeCCCcEEEEECCCCeE
Q psy226          249 SCSNDHTARVWSLAT-KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPG-QGGGPYLATGSRDKTIKLWDVGSGSL  326 (406)
Q Consensus       249 s~~~d~~v~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~s~~~d~~i~lwd~~~~~~  326 (406)
                      +.+.||.+.+.++.+ +........        .+.+....  +   ...+.. ..+|.+++ .+.+|.|.+.|+.++..
T Consensus       194 ~~~~DG~~~~v~~~~~g~v~~~~~~--------~~~~~~~~--~---~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~  259 (386)
T 3sjl_D          194 MHCRDGSLAKVAFGTEGTPEITHTE--------VFHPEDEF--L---INHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA  259 (386)
T ss_dssp             EEETTSCEEEEECCSSSCCEEEECC--------CCSCTTSC--B---CSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC
T ss_pred             EECCCCCEEEEECCCCCeEEEeecc--------eecccccc--c---cccceeEcCCCcEEE-EeCCCEEEEEECCCCcc
Confidence            888899999999876 332211100        11111000  0   000000 12354444 55689999999976542


Q ss_pred             --EEEEe---------C-CCcCEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCccceeeccccceEEEEEE
Q psy226          327 --LFTLI---------G-HDNWVRGVTFHPGGKYLVSCGD----------DKTLRVWDTANKRNMKTLEAHSHFVTSLDF  384 (406)
Q Consensus       327 --~~~~~---------~-h~~~v~~l~~s~~g~~l~sgs~----------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~  384 (406)
                        +..+.         + .......++++|+++.++..-.          .+.|.+.|..+++.++.+..- ..+..|++
T Consensus       260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lav  338 (386)
T 3sjl_D          260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINV  338 (386)
T ss_dssp             EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEE
T ss_pred             eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEE
Confidence              22221         0 1122345778999988877542          257999999999999888643 36889999


Q ss_pred             eCCCC-EEEE-eeCCCeEEEeec
Q psy226          385 HRAHP-YVVT-GSVDKTVKVWEC  405 (406)
Q Consensus       385 ~~~~~-~l~s-gs~Dg~v~iw~~  405 (406)
                      +++++ +|.+ ...++.|.++|.
T Consensus       339 s~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          339 SQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             CSSSSCEEEEEETTTTEEEEEET
T ss_pred             CCCCCeEEEEEcCCCCeEEEEEC
Confidence            99996 5555 566899999986

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.66  E-value=2e-13  Score=128.50  Aligned_cols=234  Identities=12%  Similarity=0.148  Sum_probs=166.8

Q ss_pred             CeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCC--cEEEEEcCCCeEEEE
Q psy226          150 SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK--TIKMWEVATGYCVKT  227 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~--~i~iwd~~~~~~~~~  227 (406)
                      ....|+|+++|+++++...++.|++||..+++......... ... ++|+|+++.|+++..++  .|.+++...+.....
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            56789999999988877778999999998877655544433 333 99999999998888766  788898877655444


Q ss_pred             e----ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeE----EecCCceE--EEEEeCCCCCccccccccCC
Q psy226          228 L----TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAE----LRGHDHTV--ECVAWAPGVASESISEAAGR  297 (406)
Q Consensus       228 ~----~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~----~~~~~~~v--~~~~~~~~~~~~~~~~~~~~  297 (406)
                      +    ......+..++++|++..|+.+..++.|+.||..+......    ..++....  ..++|+|.            
T Consensus       210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~------------  277 (409)
T 3hrp_A          210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV------------  277 (409)
T ss_dssp             EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETT------------
T ss_pred             eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCC------------
Confidence            4    22445678899999555555577789999999876543221    11111111  15666652            


Q ss_pred             CCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC---------------cCEEEEEEcCCCCEEEEEe-CCCeEEEE
Q psy226          298 PPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD---------------NWVRGVTFHPGGKYLVSCG-DDKTLRVW  361 (406)
Q Consensus       298 ~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~---------------~~v~~l~~s~~g~~l~sgs-~d~~i~vw  361 (406)
                           ++.++++-..++.|+.|+....  +..+.++.               .....++++|+|+++++-+ .+++|+.|
T Consensus       278 -----~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~  350 (409)
T 3hrp_A          278 -----DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL  350 (409)
T ss_dssp             -----TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred             -----CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence                 3556666667888999987543  33343332               4588999999999888887 89999999


Q ss_pred             eCCCCccceeeccc---------------cceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          362 DTANKRNMKTLEAH---------------SHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       362 d~~~~~~~~~l~~h---------------~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |..++. +.++.++               -.....|++++++.++++...+++|+.+++
T Consensus       351 ~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          351 DILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             ECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            977665 3344333               235789999999988899889999988765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.66  E-value=1.5e-13  Score=129.44  Aligned_cols=234  Identities=12%  Similarity=0.104  Sum_probs=167.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADM--SLKLWDMSTYQCLK  184 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~--~i~vwd~~~~~~~~  184 (406)
                      .....++++|+++++++...++.|++||..++......... .... ++|+++++.|+++..++  .|.+|+..++....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            35778999999998888888899999999988776655442 2333 99999999999988866  78888876544333


Q ss_pred             EE----ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEE----eecCCccE--EEEEECCC-CCEEEEEeCC
Q psy226          185 TM----QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKT----LTGHREWV--RQIKVSPD-GTLLASCSND  253 (406)
Q Consensus       185 ~~----~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~~~~~~v--~~l~~~~~-~~~l~s~~~d  253 (406)
                      .+    ......+.+++++|++..|+.+..++.|..||..++.....    ..++....  ..++|+|+ +.++++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            33    21345678899999656666677788999999987754332    22222222  28999995 6666777778


Q ss_pred             CeEEEEeCCCccceeEEecCC---------------ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe-CCCcEE
Q psy226          254 HTARVWSLATKETKAELRGHD---------------HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS-RDKTIK  317 (406)
Q Consensus       254 ~~v~vwd~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~  317 (406)
                      +.|+.|+....  ...+.++.               .....+++.|                  +|.++++-+ .++.|+
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~------------------dG~lyvad~~~~~~I~  348 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE------------------DGNFYIVDGFKGYCLR  348 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT------------------TCCEEEEETTTTCEEE
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC------------------CCCEEEEeCCCCCEEE
Confidence            99999997643  22333321               2245566655                  466677777 788999


Q ss_pred             EEECCCCeEEEEEeCC---------------CcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy226          318 LWDVGSGSLLFTLIGH---------------DNWVRGVTFHPGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       318 lwd~~~~~~~~~~~~h---------------~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~  363 (406)
                      .||+.++.. .++.++               -.....++++|+|.++++-..+++|+.+++
T Consensus       349 ~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          349 KLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            999877764 444444               246899999999988888888899988765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.63  E-value=1.5e-12  Score=117.21  Aligned_cols=226  Identities=16%  Similarity=0.213  Sum_probs=155.9

Q ss_pred             cccCeeeEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEE
Q psy226          147 HLDSVQDIAFDQSG-KLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV  225 (406)
Q Consensus       147 h~~~V~~l~~~~~g-~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~  225 (406)
                      +..-..+..|++++ .++++...++.|..||..+++. ..+ .....+.+++++|+++++++ . ++.|.+||..++...
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence            33445678899854 5566666788999999987764 233 24567999999999995554 4 567999999887654


Q ss_pred             EEeec----CCccEEEEEECCCCCEEEEEeCC---------CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccc
Q psy226          226 KTLTG----HREWVRQIKVSPDGTLLASCSND---------HTARVWSLATKETKAELRGHDHTVECVAWAPGVASESIS  292 (406)
Q Consensus       226 ~~~~~----~~~~v~~l~~~~~~~~l~s~~~d---------~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  292 (406)
                      .....    ....++.++++|+|+++++...+         ..-.+|.+........+..+......++|+|+       
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd-------  159 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD-------  159 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT-------
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC-------
Confidence            33322    12357889999999977765322         23345554432222223333344567888873       


Q ss_pred             cccCCCCCCCCCCEE-EEEeCCCcEEEEEC--CCCeE-----EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          293 EAAGRPPGQGGGPYL-ATGSRDKTIKLWDV--GSGSL-----LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       293 ~~~~~~~~~~~~~~l-~s~~~d~~i~lwd~--~~~~~-----~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                                 +..| ++.+.++.|..||+  .++..     ...+..+......++++++|++.++...++.|.+||..
T Consensus       160 -----------g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          160 -----------HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             -----------SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred             -----------CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence                       4444 55566788999987  45543     22333344568899999999988888888999999999


Q ss_pred             CCccceeeccccceEEEEEEe-CCCCEEEEe
Q psy226          365 NKRNMKTLEAHSHFVTSLDFH-RAHPYVVTG  394 (406)
Q Consensus       365 ~~~~~~~l~~h~~~v~~l~~~-~~~~~l~sg  394 (406)
                      +++.+..+..+...+++++|. |+++.|..+
T Consensus       229 tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt  259 (297)
T 3g4e_A          229 TGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT  259 (297)
T ss_dssp             TCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred             CceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence            899888888777789999998 887766443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=5.7e-12  Score=112.88  Aligned_cols=236  Identities=11%  Similarity=0.011  Sum_probs=169.0

Q ss_pred             cccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEE
Q psy226          147 HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK-TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV  225 (406)
Q Consensus       147 h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~  225 (406)
                      ....+.+++++++|++.++...++.|.+||.. ++... .+......+.++++.+++.++++...++.|..+|.. +...
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~   95 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT   95 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence            44578899999999988877778999999987 55433 222234578899999999887777668899999987 5443


Q ss_pred             E-EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCcccee-EEecCCceEEEEEeCCCCCccccccccCCCCCCCC
Q psy226          226 K-TLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKA-ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGG  303 (406)
Q Consensus       226 ~-~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (406)
                      . .+......+..++++++|+++++...++.|..+|.. ++... .+......+..+++.+                  +
T Consensus        96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~------------------~  156 (300)
T 2qc5_A           96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS------------------D  156 (300)
T ss_dssp             EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT------------------T
T ss_pred             EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC------------------C
Confidence            2 222234668899999999988888778899999986 43321 1222334566676665                  3


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEE-EEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccce-eeccccceEEE
Q psy226          304 GPYLATGSRDKTIKLWDVGSGSLLF-TLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMK-TLEAHSHFVTS  381 (406)
Q Consensus       304 ~~~l~s~~~d~~i~lwd~~~~~~~~-~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~-~l~~h~~~v~~  381 (406)
                      +.+.++...++.|..||. +++... ....+...+.+++++++|...++....+.|.+||. +++... .+..+...+.+
T Consensus       157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~  234 (300)
T 2qc5_A          157 NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHA  234 (300)
T ss_dssp             SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceE
Confidence            555666656788999998 555443 22344567899999999988887777789999998 444322 22334456889


Q ss_pred             EEEeCCCCEEEEeeCCCeEEEeec
Q psy226          382 LDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       382 l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +++++++.+.++...++.|..|+.
T Consensus       235 i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          235 ITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             EEECSTTCEEEEETTTTEEEEECT
T ss_pred             EEECCCCCEEEeccCCCeEEEECC
Confidence            999999998777767788888874

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.61  E-value=1.4e-12  Score=117.50  Aligned_cols=225  Identities=12%  Similarity=0.070  Sum_probs=154.8

Q ss_pred             CeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          108 PVIKVIFHPV-FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       108 ~V~~v~~~p~-~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      ---+..|+|+ +.++++...++.|..||..+++... + .....+.+++++++|+++++ . +..|.+||..+++.....
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence            3457889995 5577777788999999999887532 2 23467999999999995554 4 567999999887653322


Q ss_pred             ec----CCcceEEEEEecCCCEEEEEeCC---------CcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEE-EEEeC
Q psy226          187 QG----HDHNVTGVAFLPNSDFVLSASRD---------KTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLL-ASCSN  252 (406)
Q Consensus       187 ~~----h~~~v~~~~~~p~~~~l~s~s~d---------~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~  252 (406)
                      ..    ....+..+++.|+|+++++...+         ..-.+|.+........+..+....+.++|+|+++.+ ++.+.
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~  169 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSL  169 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCC
Confidence            21    12357889999999976654322         334566554322223333344556889999999866 55566


Q ss_pred             CCeEEEEeCC--Cccce-----eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe
Q psy226          253 DHTARVWSLA--TKETK-----AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS  325 (406)
Q Consensus       253 d~~v~vwd~~--~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~  325 (406)
                      ++.|.+|++.  ++...     ..+..+......+++.+                  +|.+.++...++.|..||..+++
T Consensus       170 ~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~------------------~G~lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          170 SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA------------------EGKLWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT------------------TSCEEEEEETTTEEEEECTTTCC
T ss_pred             CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC------------------CCCEEEEEcCCCEEEEEcCCCce
Confidence            8899999873  33221     11222234456666655                  46677777778889999999899


Q ss_pred             EEEEEeCCCcCEEEEEEc-CCCCEEEEEeC
Q psy226          326 LLFTLIGHDNWVRGVTFH-PGGKYLVSCGD  354 (406)
Q Consensus       326 ~~~~~~~h~~~v~~l~~s-~~g~~l~sgs~  354 (406)
                      .+..+..+...+++++|. |+++.|+.++.
T Consensus       232 ~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          232 RLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            988888777789999998 88887765553

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.61  E-value=1.9e-13  Score=128.01  Aligned_cols=259  Identities=12%  Similarity=0.087  Sum_probs=174.2

Q ss_pred             CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEecC-------C
Q psy226          128 ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS----------ADMSLKLWDMSTYQCLKTMQGH-------D  190 (406)
Q Consensus       128 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs----------~d~~i~vwd~~~~~~~~~~~~h-------~  190 (406)
                      ++|.++|..+++.+..+.....+  .++++|||++|+++.          .++.|.++|..+++.+.++.-.       .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            79999999999999888755555  899999999888876          3678999999999988776532       1


Q ss_pred             cceEEEEEecCCCEEEEEeC--CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCCccce
Q psy226          191 HNVTGVAFLPNSDFVLSASR--DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKETK  267 (406)
Q Consensus       191 ~~v~~~~~~p~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~  267 (406)
                      .....+.|+|+|++++++..  +++|.+.|+.+++.+..+.-...    ....|++ ..+++.+.||.+.+.++.+.+..
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~  252 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETK  252 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCE
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEE
Confidence            23456899999999998874  57899999999998887764221    2233433 56677778888888887444332


Q ss_pred             eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE--EEe--C-C-------Cc
Q psy226          268 AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF--TLI--G-H-------DN  335 (406)
Q Consensus       268 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~--~~~--~-h-------~~  335 (406)
                      .... +       .+......     ..........+..++..+..+.|.+.|...+....  .+.  . .       ..
T Consensus       253 ~~~~-~-------~~~v~~~p-----~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~  319 (426)
T 3c75_H          253 VTNT-E-------VFHTEDEL-----LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG  319 (426)
T ss_dssp             EEEC-C-------CCSCTTSC-----BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred             EEee-e-------eeccCCCc-----eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence            1110 0       00000000     00000001123444445667899999986554321  110  0 0       01


Q ss_pred             CEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCccceeeccccceEEEEEEeCCCC-EEEEee-CCCeEEEe
Q psy226          336 WVRGVTFHPGGKYLVSCGD----------DKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP-YVVTGS-VDKTVKVW  403 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs~----------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~-~l~sgs-~Dg~v~iw  403 (406)
                      ....++++|+++.++....          ++.|.++|..+.+.++++..- .....++|+|+++ ++++.. .++.|.++
T Consensus       320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVI  398 (426)
T 3c75_H          320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIY  398 (426)
T ss_dssp             SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence            1123689999887766532          357999999999999988643 3578999999999 887777 59999999


Q ss_pred             ecC
Q psy226          404 ECR  406 (406)
Q Consensus       404 ~~~  406 (406)
                      |..
T Consensus       399 D~~  401 (426)
T 3c75_H          399 DAA  401 (426)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            963

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.60  E-value=7.1e-12  Score=116.37  Aligned_cols=247  Identities=9%  Similarity=-0.052  Sum_probs=161.7

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcEEEEeccc-------ccCeeeEEECCCCCEEEEEeC--CCc
Q psy226          111 KVIFHPVFSLMASCS----------EDATIRLWDYETGEYERALHGH-------LDSVQDIAFDQSGKLLVSCSA--DMS  171 (406)
Q Consensus       111 ~v~~~p~~~~latgs----------~dg~v~vwd~~~~~~~~~~~~h-------~~~V~~l~~~~~g~~l~sgs~--d~~  171 (406)
                      .++|+|+++.++.+.          .++.|.+||..+.+....+.-.       ......++|+|+|++|++++.  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999998886          3688999999998877665421       123457999999999998874  478


Q ss_pred             EEEEeCCCCeEEEE-EecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCCCeEEEEee-----cCCcc-EEEEEECCC
Q psy226          172 LKLWDMSTYQCLKT-MQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYCVKTLT-----GHREW-VRQIKVSPD  243 (406)
Q Consensus       172 i~vwd~~~~~~~~~-~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~-----~~~~~-v~~l~~~~~  243 (406)
                      |.++| .+++.+.. +....    ++.+.|++. .+++.+.||.+.++|. ++.......     ....+ .....+.++
T Consensus       150 v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            99999 99988766 54221    245566653 5566778999999999 876653321     11111 122445666


Q ss_pred             CCEEEEEeCCCeEEEEeCCCccce--eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC---------
Q psy226          244 GTLLASCSNDHTARVWSLATKETK--AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR---------  312 (406)
Q Consensus       244 ~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---------  312 (406)
                      +..++..+.++.+.+.|+......  ..+...........|.|.....    ..    ...++..++++..         
T Consensus       224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~----~~----~s~d~~~lyV~~~~~~~~~~~~  295 (373)
T 2mad_H          224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQ----VA----YLKSSDGIYLLTSEQSAWKLHA  295 (373)
T ss_pred             CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEe----EE----ECCCCCEEEEEeccCCcccccC
Confidence            555444457889999998654321  1111111111112222221000    00    0113444555432         


Q ss_pred             -CCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCccceee
Q psy226          313 -DKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK-YLVSCG-DDKTLRVWDTANKRNMKTL  372 (406)
Q Consensus       313 -d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~-~l~sgs-~d~~i~vwd~~~~~~~~~l  372 (406)
                       ++.|.++|+.+++.+.++.. .....+++|+|||+ .++++. .++.|.|+|..+++.++++
T Consensus       296 ~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          296 AAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             CCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence             35799999999999888753 33578999999999 777776 5899999999999888774

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.60  E-value=2.9e-14  Score=131.68  Aligned_cols=165  Identities=13%  Similarity=0.086  Sum_probs=132.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc---------EEE-EecccccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGE---------YER-ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~---------~~~-~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      +++.+++++...++++|+.++ +++|++.+.+         +.. ....+.. |+.|+|  ++..|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            689999999999999999985 5569865433         221 2223555 999999  89999998 8899999999


Q ss_pred             CCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Q psy226          178 STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTAR  257 (406)
Q Consensus       178 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~  257 (406)
                      .+.........|..++.++.+.+.  .+++++.||+|.+||+.++....    +...|++++|+|+|  ++.|..||+++
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence            877666677778888988887754  38889999999999999877653    44679999999999  78899999999


Q ss_pred             EEeCCCccc--eeEE------e---cCCceEEEEEeCCC
Q psy226          258 VWSLATKET--KAEL------R---GHDHTVECVAWAPG  285 (406)
Q Consensus       258 vwd~~~~~~--~~~~------~---~~~~~v~~~~~~~~  285 (406)
                      +|+......  ...+      .   +|...|.++.|.+.
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~  224 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP  224 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecC
Confidence            998876654  4444      2   47889999999974

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.60  E-value=4.7e-14  Score=130.30  Aligned_cols=171  Identities=11%  Similarity=0.029  Sum_probs=136.0

Q ss_pred             ceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe----------EEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy226          192 NVTGVAFLPNSDFVLSASRDKTIKMWEVATGY----------CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSL  261 (406)
Q Consensus       192 ~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~----------~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~  261 (406)
                      .+..+++++...++++|+.++ +.+|++....          .......+.. |+.++|  ++++|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            688899999999999999985 5569875432          1112234566 999999  89999998 8899999999


Q ss_pred             CCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEE
Q psy226          262 ATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT  341 (406)
Q Consensus       262 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~  341 (406)
                      .+.........|...+.++.+.+.                    .+++++.||.|.+||+.++....    +...|++++
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p--------------------~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~  169 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNN--------------------TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFD  169 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--------------------EEEEEETTSEEEEEETTTCCEEE----EEESEEEEE
T ss_pred             hhhhccCccceeecceeeEEecCC--------------------CEEEEECCCCEEEEEccCCcccc----ccCCceEEE
Confidence            887766666777777777765541                    28888999999999999887653    345799999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCcc--ceee------c---cccceEEEEEEeCCCCEEEE
Q psy226          342 FHPGGKYLVSCGDDKTLRVWDTANKRN--MKTL------E---AHSHFVTSLDFHRAHPYVVT  393 (406)
Q Consensus       342 ~s~~g~~l~sgs~d~~i~vwd~~~~~~--~~~l------~---~h~~~v~~l~~~~~~~~l~s  393 (406)
                      |||+|  ++.|..||+|++|+...++.  .+++      .   +|...|.+|.|.+++.++++
T Consensus       170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            99999  67899999999998877664  4555      2   36788999999999999886

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.59  E-value=4.5e-13  Score=123.29  Aligned_cols=253  Identities=14%  Similarity=0.090  Sum_probs=166.9

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcEEEEeccc-------ccCeeeEEECCCCCEEEEEeC--CCc
Q psy226          111 KVIFHPVFSLMASCS----------EDATIRLWDYETGEYERALHGH-------LDSVQDIAFDQSGKLLVSCSA--DMS  171 (406)
Q Consensus       111 ~v~~~p~~~~latgs----------~dg~v~vwd~~~~~~~~~~~~h-------~~~V~~l~~~~~g~~l~sgs~--d~~  171 (406)
                      .++++|+++.++.++          .++.|.+||..+++....+.-.       ......++|+|||++|+++..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999887765          3678999999999988776422       124667999999999988864  689


Q ss_pred             EEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC-CeEEEEeecC----CccEE-EEEE-CCCC
Q psy226          172 LKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT-GYCVKTLTGH----REWVR-QIKV-SPDG  244 (406)
Q Consensus       172 i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~----~~~v~-~l~~-~~~~  244 (406)
                      |.++|+.+++.+.++....  . ...+....+.+++.+.||++.+.++.+ +........+    ...+. ...| .++|
T Consensus       162 VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             EEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             EEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence            9999999999888875422  1 223333445677888899999999876 5543222111    11221 2345 4677


Q ss_pred             CEEEEEeCCCeEEEEeCCCccce--eEEecC----------CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC
Q psy226          245 TLLASCSNDHTARVWSLATKETK--AELRGH----------DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR  312 (406)
Q Consensus       245 ~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  312 (406)
                      ++++ .+.+|.|.+.|+.+....  ..+.-.          ......++++|                  .+..++....
T Consensus       239 ~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~------------------~~~~lyV~~~  299 (386)
T 3sjl_D          239 RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR------------------ALDRIYLLVD  299 (386)
T ss_dssp             EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET------------------TTTEEEEEEE
T ss_pred             cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC------------------CCCeEEEEec
Confidence            6554 556899999998765321  111100          00011122222                  2334444332


Q ss_pred             ----------CCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCC-EEEE-EeCCCeEEEEeCCCCccceeeccccceEE
Q psy226          313 ----------DKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK-YLVS-CGDDKTLRVWDTANKRNMKTLEAHSHFVT  380 (406)
Q Consensus       313 ----------d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~-~l~s-gs~d~~i~vwd~~~~~~~~~l~~h~~~v~  380 (406)
                                .+.|.+.|+.+++.+..+.- ...+.+|+++|+++ +|++ ...++.|.|+|..+++.++++..-.+ -+
T Consensus       300 ~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~-p~  377 (386)
T 3sjl_D          300 QRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH-GP  377 (386)
T ss_dssp             ECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS-SC
T ss_pred             cccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC-Cc
Confidence                      25799999999999887653 23577999999997 6666 45689999999999999988864322 23


Q ss_pred             EEEEeCC
Q psy226          381 SLDFHRA  387 (406)
Q Consensus       381 ~l~~~~~  387 (406)
                      .|.+++|
T Consensus       378 ~l~~s~d  384 (386)
T 3sjl_D          378 QVITTAD  384 (386)
T ss_dssp             CEEEECC
T ss_pred             eeEECCc
Confidence            4455554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.59  E-value=4.5e-14  Score=129.98  Aligned_cols=260  Identities=14%  Similarity=0.105  Sum_probs=172.5

Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCcEEEEe-------cccccCeeeEEECCCCCEEEEEeC-----CCcE
Q psy226          107 SPVIKVIFHPVFSLMASCS--EDATIRLWDYETGEYERAL-------HGHLDSVQDIAFDQSGKLLVSCSA-----DMSL  172 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs--~dg~v~vwd~~~~~~~~~~-------~~h~~~V~~l~~~~~g~~l~sgs~-----d~~i  172 (406)
                      ..+..|+++|+++++++..  .++.++||.+.+++.. .+       .+|...+.+++++++|++.++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5788999999999999864  2343566655556533 22       234567999999999886665443     5789


Q ss_pred             EEEeCCCCeEEEEEecC------CcceEEEEEecCCCEE-EEEe---CCCcEEEEEcCCCeEEEEeecCCccEE-EEEEC
Q psy226          173 KLWDMSTYQCLKTMQGH------DHNVTGVAFLPNSDFV-LSAS---RDKTIKMWEVATGYCVKTLTGHREWVR-QIKVS  241 (406)
Q Consensus       173 ~vwd~~~~~~~~~~~~h------~~~v~~~~~~p~~~~l-~s~s---~d~~i~iwd~~~~~~~~~~~~~~~~v~-~l~~~  241 (406)
                      .+||+.+++.+..+...      ...+..+++.|++..+ ++-+   .++.|.+||..++...+.+.+|..... ...+.
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99999998877766532      2346889999865554 4444   578999999998887777765432111 13344


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCC-cEEEEE
Q psy226          242 PDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK-TIKLWD  320 (406)
Q Consensus       242 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~lwd  320 (406)
                      ++|..+.+.+.++.++.|..              .+..++++|                  ++..|+.+..++ .|..++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~------------------dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDA------------------ENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             ETTEECBEECTTSCEECCCC--------------CEEEEEECT------------------TSCEEEEEESSCSEEEEEE
T ss_pred             ECCEEEEeccCCCceeceec--------------ccceeEecc------------------CCCEEEEEeCCCCeEEEEE
Confidence            56777777778888766642              245688887                  356677776665 444444


Q ss_pred             CC---CCe-----EE--EEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec-cccceEEEEEEeCCCC
Q psy226          321 VG---SGS-----LL--FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE-AHSHFVTSLDFHRAHP  389 (406)
Q Consensus       321 ~~---~~~-----~~--~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~~~~~~  389 (406)
                      ..   .+.     ..  ....++......++++++|.++++...++.|.+||..+++...... .+.....+++|.+++.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY  303 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence            21   110     00  0112333345679999999999999999999999985554322222 1245689999999998


Q ss_pred             EEEEeeCCCe
Q psy226          390 YVVTGSVDKT  399 (406)
Q Consensus       390 ~l~sgs~Dg~  399 (406)
                      ++++.+..+.
T Consensus       304 l~v~~~~~~~  313 (343)
T 2qe8_A          304 LYFDCNQLHH  313 (343)
T ss_dssp             EEEEECCGGG
T ss_pred             EEEEeCcccc
Confidence            8887764433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.58  E-value=2.2e-13  Score=137.27  Aligned_cols=240  Identities=15%  Similarity=0.097  Sum_probs=159.8

Q ss_pred             cCCCCeEEEEEcCCCCEEEE-----EeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCc-------
Q psy226          104 GHRSPVIKVIFHPVFSLMAS-----CSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMS-------  171 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~lat-----gs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~-------  171 (406)
                      +|...+..++||||+++||-     |+...+|++||+.+++.... ..+.....+++|+ ||+.|+.++.+..       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            46667889999999998883     33446799999999986543 1111123678999 9999998888744       


Q ss_pred             ------EEEEeCCCCe----EEEEEec-CCcceEEEEEecCCCEEEEEeC----CCcEEEEEcCCCe-EEEEeecCCccE
Q psy226          172 ------LKLWDMSTYQ----CLKTMQG-HDHNVTGVAFLPNSDFVLSASR----DKTIKMWEVATGY-CVKTLTGHREWV  235 (406)
Q Consensus       172 ------i~vwd~~~~~----~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~----d~~i~iwd~~~~~-~~~~~~~~~~~v  235 (406)
                            |++|++.+.+    ++..... |...+.++.|+|+|++|+..+.    +..|.++|+.++. ....+..+....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                  9999997654    2333233 4445788999999998754332    3589999997763 445566665555


Q ss_pred             EEEEECCCCCEEEEEe-CC---CeEEEEeCCCccc--eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE
Q psy226          236 RQIKVSPDGTLLASCS-ND---HTARVWSLATKET--KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT  309 (406)
Q Consensus       236 ~~l~~~~~~~~l~s~~-~d---~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  309 (406)
                      ... ++++|..|+..+ .+   +.|..+|+.++..  ...+..|...+.  .|+|                  .+.+|+.
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~------------------~g~~lv~  342 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS------------------GSGYLFA  342 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE------------------ETTEEEE
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE------------------ECCEEEE
Confidence            444 566666655444 33   5799999987644  244555554443  5554                  2445555


Q ss_pred             EeC-CC--cEEEEECCCCeEEEEEe-CCCcCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCc
Q psy226          310 GSR-DK--TIKLWDVGSGSLLFTLI-GHDNWVRGVTFHPGGKYLVSCGDD----KTLRVWDTANKR  367 (406)
Q Consensus       310 ~~~-d~--~i~lwd~~~~~~~~~~~-~h~~~v~~l~~s~~g~~l~sgs~d----~~i~vwd~~~~~  367 (406)
                      ... ++  .|++||+..+. ...+. .....+..+.++|+++.|+....+    ++|+.||+.+++
T Consensus       343 ~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          343 EYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            554 44  68999987544 34443 344567888888888876655444    789999987664

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.55  E-value=2.4e-11  Score=110.84  Aligned_cols=219  Identities=11%  Similarity=0.110  Sum_probs=149.2

Q ss_pred             eeeEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee
Q psy226          151 VQDIAFDQSG-KLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT  229 (406)
Q Consensus       151 V~~l~~~~~g-~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  229 (406)
                      ..+..|++++ .++++...++.|..||..+++.. .+. ....+.+++|.|+++++++. .+ .|.+||..++.......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            4567899975 45666667889999999887643 332 34579999999998877654 44 49999998876543322


Q ss_pred             c----CCccEEEEEECCCCCEEEEEeC------CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCC
Q psy226          230 G----HREWVRQIKVSPDGTLLASCSN------DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPP  299 (406)
Q Consensus       230 ~----~~~~v~~l~~~~~~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  299 (406)
                      .    ....++.++++|+|+++++...      .+.|..++  +++ ...+..+......++|+|+              
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~~~~~~~i~~s~d--------------  189 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFADISIPNSICFSPD--------------  189 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEEESSEEEEEECTT--------------
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCCCcccCCeEEcCC--------------
Confidence            1    1235889999999997776542      24455555  332 2222222234567788773              


Q ss_pred             CCCCCCEE-EEEeCCCcEEEEECC--CC-e-----EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccce
Q psy226          300 GQGGGPYL-ATGSRDKTIKLWDVG--SG-S-----LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMK  370 (406)
Q Consensus       300 ~~~~~~~l-~s~~~d~~i~lwd~~--~~-~-----~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~  370 (406)
                          +..+ ++.+.++.|.+||+.  ++ .     ....+......+.+++++++|.+.++...++.|.+||. +++.+.
T Consensus       190 ----g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~  264 (326)
T 2ghs_A          190 ----GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIA  264 (326)
T ss_dssp             ----SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEE
T ss_pred             ----CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEE
Confidence                5444 444567899999985  55 2     23333334456788999999998888777789999998 567777


Q ss_pred             eeccccceEEEEEEe-CCCCEEEEee
Q psy226          371 TLEAHSHFVTSLDFH-RAHPYVVTGS  395 (406)
Q Consensus       371 ~l~~h~~~v~~l~~~-~~~~~l~sgs  395 (406)
                      .+..+...+++++|. +++..|..++
T Consensus       265 ~i~~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          265 RYEVPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             EEECCCCCcEEEEEecCCCCEEEEEe
Confidence            777666679999998 8887664443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.55  E-value=6e-13  Score=134.11  Aligned_cols=237  Identities=18%  Similarity=0.210  Sum_probs=157.2

Q ss_pred             ccccCeeeEEECCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCc-------
Q psy226          146 GHLDSVQDIAFDQSGKLLVSC-----SADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT-------  213 (406)
Q Consensus       146 ~h~~~V~~l~~~~~g~~l~sg-----s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~-------  213 (406)
                      +|...+..++|||||++|+-+     +.+.+|++||+.+++.+... .+.....+++|+ |++.|+.++.+..       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            355578889999999988843     33357999999998865431 111123578899 9999998888744       


Q ss_pred             ------EEEEEcCCCe----EEEEeec-CCccEEEEEECCCCCEEEEEeC----CCeEEEEeCCCcc-ceeEEecCCceE
Q psy226          214 ------IKMWEVATGY----CVKTLTG-HREWVRQIKVSPDGTLLASCSN----DHTARVWSLATKE-TKAELRGHDHTV  277 (406)
Q Consensus       214 ------i~iwd~~~~~----~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~----d~~v~vwd~~~~~-~~~~~~~~~~~v  277 (406)
                            |++|++.++.    ++..... |..+...+.++|||++|+....    +..++++|+.++. ....+..+....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                  9999998764    2333333 5566788999999998754432    3589999987653 344455444443


Q ss_pred             EEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC---CcEEEEECCCCeE--EEEEeCCCcCEEEEEEcCCCCEEEEE
Q psy226          278 ECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD---KTIKLWDVGSGSL--LFTLIGHDNWVRGVTFHPGGKYLVSC  352 (406)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~lwd~~~~~~--~~~~~~h~~~v~~l~~s~~g~~l~sg  352 (406)
                      ... +.+.                 ++.+++....+   +.|..+|+.++..  ...+..|...+.  .|++++++|+..
T Consensus       284 ~~~-~~~~-----------------g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~  343 (693)
T 3iuj_A          284 VSL-VDNK-----------------GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAE  343 (693)
T ss_dssp             EEE-EEEE-----------------TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred             EEE-Eecc-----------------CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEE
Confidence            333 2221                 23344444443   5799999987654  235666666555  889999988766


Q ss_pred             eC-CC--eEEEEeCCCCccceeec-cccceEEEEEEeCCCCEEEEeeCC----CeEEEeec
Q psy226          353 GD-DK--TLRVWDTANKRNMKTLE-AHSHFVTSLDFHRAHPYVVTGSVD----KTVKVWEC  405 (406)
Q Consensus       353 s~-d~--~i~vwd~~~~~~~~~l~-~h~~~v~~l~~~~~~~~l~sgs~D----g~v~iw~~  405 (406)
                      .. ++  .|++||+..+ ....+. .....+..+.+++++..|+....+    +++..||+
T Consensus       344 ~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          344 YMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             EEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             EEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            54 43  7899998754 334443 244567888888888876655444    67888775

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.54  E-value=2.4e-11  Score=110.82  Aligned_cols=220  Identities=14%  Similarity=0.043  Sum_probs=148.3

Q ss_pred             eEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q psy226          109 VIKVIFHPV-FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       109 V~~v~~~p~-~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      ..+.+|+|+ +.+++++..++.|..||..+++... +. ....+.+++++++|+++++. .+ .|.+||..+++......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            467889997 4566777788999999998876543 22 34579999999999877754 44 49999998776533222


Q ss_pred             c----CCcceEEEEEecCCCEEEEEeC------CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEE-EeCCCeE
Q psy226          188 G----HDHNVTGVAFLPNSDFVLSASR------DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLAS-CSNDHTA  256 (406)
Q Consensus       188 ~----h~~~v~~~~~~p~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~~~d~~v  256 (406)
                      .    ....+.+++++|+|+++++...      .+.|..++  ++... .+..+......++|+|+|+.++. .+.++.|
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I  203 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRL  203 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence            1    1235889999999997665542      23455555  45433 33333345678999999987654 4567899


Q ss_pred             EEEeCC--Cc-cce--eEE---ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy226          257 RVWSLA--TK-ETK--AEL---RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF  328 (406)
Q Consensus       257 ~vwd~~--~~-~~~--~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~  328 (406)
                      .+||+.  ++ ...  ..+   .........+.+.+                  +|.+.++...++.|..||. +++.+.
T Consensus       204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~------------------~G~lwva~~~~~~v~~~d~-~g~~~~  264 (326)
T 2ghs_A          204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA------------------EGHIWNARWGEGAVDRYDT-DGNHIA  264 (326)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT------------------TSCEEEEEETTTEEEEECT-TCCEEE
T ss_pred             EEEEcccccCCcccCceEEEECCCCCCCCCeeEECC------------------CCCEEEEEeCCCEEEEECC-CCCEEE
Confidence            999985  43 211  111   12233445555544                  4566666666788999998 677777


Q ss_pred             EEeCCCcCEEEEEEc-CCCCEEEEEeC
Q psy226          329 TLIGHDNWVRGVTFH-PGGKYLVSCGD  354 (406)
Q Consensus       329 ~~~~h~~~v~~l~~s-~~g~~l~sgs~  354 (406)
                      .+..+...+++++|+ |+++.|+.++.
T Consensus       265 ~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          265 RYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEECCCCCcEEEEEecCCCCEEEEEec
Confidence            777777789999998 88887755443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.53  E-value=1.1e-11  Score=112.00  Aligned_cols=229  Identities=13%  Similarity=0.074  Sum_probs=151.9

Q ss_pred             eccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          102 LSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~-~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      +..........+|+|+++ +++++..++.|..|+. +++. ..+..+...+.+++++++|+++++...++.|.+|+.. +
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            334445567889999998 7778888999999998 4553 3444566778999999999977666666889999986 5


Q ss_pred             eEEEEEecC-----CcceEEEEEecCCCEEEE----EeC-------------CCcEEEEEcCCCeEEEEeecCCccEEEE
Q psy226          181 QCLKTMQGH-----DHNVTGVAFLPNSDFVLS----ASR-------------DKTIKMWEVATGYCVKTLTGHREWVRQI  238 (406)
Q Consensus       181 ~~~~~~~~h-----~~~v~~~~~~p~~~~l~s----~s~-------------d~~i~iwd~~~~~~~~~~~~~~~~v~~l  238 (406)
                      +.. .+..+     ...+..+++.|+|++.++    |..             .+.|..+|..++......  .....+.+
T Consensus       117 ~~~-~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl  193 (305)
T 3dr2_A          117 QAH-LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL  193 (305)
T ss_dssp             CEE-EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred             CEE-EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence            432 22211     124667999999998886    332             245777777666544332  33456789


Q ss_pred             EECCCCCEEEEEeCC------CeEEEEeCCCccceeE---Ee-cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEE
Q psy226          239 KVSPDGTLLASCSND------HTARVWSLATKETKAE---LR-GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLA  308 (406)
Q Consensus       239 ~~~~~~~~l~s~~~d------~~v~vwd~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  308 (406)
                      +|+|+++.|+.+...      +.|.+|++.... +..   +. ........+.+.                  ..|. +.
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d------------------~~G~-lw  253 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVD------------------RGGW-LW  253 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEEC------------------TTSC-EE
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEEC------------------CCCC-EE
Confidence            999999987777665      789999986543 111   00 000111112222                  2455 44


Q ss_pred             EEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEE
Q psy226          309 TGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR  359 (406)
Q Consensus       309 s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~  359 (406)
                      +++.+ .|.+||. .++.+..+..+. .+.+++|+|+++.|+.++.++..+
T Consensus       254 v~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          254 SSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             ECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             EecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            44444 4999998 577776666554 588999999999888888765433

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.51  E-value=4.2e-16  Score=144.99  Aligned_cols=225  Identities=16%  Similarity=0.090  Sum_probs=128.2

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcc-eE-
Q psy226          117 VFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN-VT-  194 (406)
Q Consensus       117 ~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~-v~-  194 (406)
                      ++..+++++.||.|+.||..+|+....+..  +.+.+..+..++..+++++.|+.|+.||..+++.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            467899999999999999999998877765  56666666677878888889999999999888776555433211 10 


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCC
Q psy226          195 GVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHD  274 (406)
Q Consensus       195 ~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~  274 (406)
                      +..+ ..+..+++|+.|+.|..||..+|+.+..+..+.    ...++|++..+++++.|+.|+.||..+++.+-.+..+.
T Consensus        86 sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~  160 (369)
T 2hz6_A           86 SPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD  160 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred             CceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence            0011 134578888999999999999999887776553    23456788899999999999999999887654443211


Q ss_pred             ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEE----E
Q psy226          275 HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYL----V  350 (406)
Q Consensus       275 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l----~  350 (406)
                             +.+..    +.     .... ....+++++.|+.|+.||..+|+.+..+.-....+....++++|...    +
T Consensus       161 -------~~~~~----~~-----~~~~-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~  223 (369)
T 2hz6_A          161 -------YAASL----PE-----DDVD-YKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHIN  223 (369)
T ss_dssp             -------ECCBC----CC-----CCTT-CCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCEE
T ss_pred             -------ccCcc----cc-----CCcc-ccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEecccee
Confidence                   11100    00     0000 11357778999999999999999888776433333444556666432    1


Q ss_pred             EEeCCCeEEEEeCCCCc
Q psy226          351 SCGDDKTLRVWDTANKR  367 (406)
Q Consensus       351 sgs~d~~i~vwd~~~~~  367 (406)
                      .+  ++.++.+|..+++
T Consensus       224 ~~--~~~l~~ld~~tG~  238 (369)
T 2hz6_A          224 VA--VETLRYLTFMSGE  238 (369)
T ss_dssp             EE--HHHHHHHHHHHHH
T ss_pred             ec--ccceeeeehhcCC
Confidence            22  3456666665555

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.49  E-value=1.6e-11  Score=110.90  Aligned_cols=232  Identities=13%  Similarity=0.090  Sum_probs=155.3

Q ss_pred             ecccccCeeeEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q psy226          144 LHGHLDSVQDIAFDQSGK-LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG  222 (406)
Q Consensus       144 ~~~h~~~V~~l~~~~~g~-~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~  222 (406)
                      +..+.....+..|+++|+ +++++..++.|..|+. +++ ...+..+...+.+++++|+|+++++...++.|.+||.. +
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            333445567899999998 6667777899999998 444 34555566778999999999976665566889999975 5


Q ss_pred             eEEEEeecC----CccEEEEEECCCCCEEEE----EeC-------------CCeEEEEeCCCccceeEEecCCceEEEEE
Q psy226          223 YCVKTLTGH----REWVRQIKVSPDGTLLAS----CSN-------------DHTARVWSLATKETKAELRGHDHTVECVA  281 (406)
Q Consensus       223 ~~~~~~~~~----~~~v~~l~~~~~~~~l~s----~~~-------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~  281 (406)
                      .........    ...++.++++|+|+++++    |..             .+.|..+|..+++.....  .......++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~  194 (305)
T 3dr2_A          117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLA  194 (305)
T ss_dssp             CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEE
T ss_pred             CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceE
Confidence            432222111    124667999999998886    332             256777777655543322  233456778


Q ss_pred             eCCCCCccccccccCCCCCCCCCCEEEEEeCC------CcEEEEECCCCeEE--EEE-eCCCcCEEEEEEcCCCCEEEEE
Q psy226          282 WAPGVASESISEAAGRPPGQGGGPYLATGSRD------KTIKLWDVGSGSLL--FTL-IGHDNWVRGVTFHPGGKYLVSC  352 (406)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~lwd~~~~~~~--~~~-~~h~~~v~~l~~s~~g~~l~sg  352 (406)
                      |+|+                  +..|+.+...      +.|.+||+..+...  ..+ .........++++++|++.++.
T Consensus       195 ~spd------------------g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~  256 (305)
T 3dr2_A          195 FSPD------------------EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS  256 (305)
T ss_dssp             ECTT------------------SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC
T ss_pred             EcCC------------------CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec
Confidence            8873                  5556666554      68999998755411  111 1123345678999999955544


Q ss_pred             eCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEE
Q psy226          353 GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKV  402 (406)
Q Consensus       353 s~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~i  402 (406)
                       .+ .|.+||. .++.+..+.... .+.+++|.++++.|..++.++..++
T Consensus       257 -~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          257 -GT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             -SS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             -CC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence             44 4999997 566666666554 4889999999988887777655444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.46  E-value=1.7e-11  Score=114.79  Aligned_cols=239  Identities=12%  Similarity=0.064  Sum_probs=164.1

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcEEEEeccc-------ccCeeeEEECCCCCEEEEEeC--CCc
Q psy226          111 KVIFHPVFSLMASCS----------EDATIRLWDYETGEYERALHGH-------LDSVQDIAFDQSGKLLVSCSA--DMS  171 (406)
Q Consensus       111 ~v~~~p~~~~latgs----------~dg~v~vwd~~~~~~~~~~~~h-------~~~V~~l~~~~~g~~l~sgs~--d~~  171 (406)
                      .++++|+++.|+.+.          .++.|.++|..+++....+.-.       ......+.|+|||++|+++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999888776          4789999999999988776421       234567999999999998874  578


Q ss_pred             EEEEeCCCCeEEEEEecCCcceEEEEEecCC-CEEEEEeCCCcEEEEEcCCCeEEEE----eecCCccE-EEEEECCCCC
Q psy226          172 LKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTIKMWEVATGYCVKT----LTGHREWV-RQIKVSPDGT  245 (406)
Q Consensus       172 i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~iwd~~~~~~~~~----~~~~~~~v-~~l~~~~~~~  245 (406)
                      |.+.|+.+++.+.++..-..    ....|++ ..+++.+.||.+.+.+..++.....    +.....++ ..+.+.+++.
T Consensus       202 VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~  277 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG  277 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred             EEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence            99999999998887764221    2334443 4566677788888778755544322    11111111 2356789988


Q ss_pred             EEEEEeCCCeEEEEeCCCcccee--EEec---CC-------ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC-
Q psy226          246 LLASCSNDHTARVWSLATKETKA--ELRG---HD-------HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR-  312 (406)
Q Consensus       246 ~l~s~~~d~~v~vwd~~~~~~~~--~~~~---~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-  312 (406)
                      .++..+..+.+.+.|+.......  .+..   ..       .....++++|                  ++..+++... 
T Consensus       278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~------------------dg~rlyVa~~~  339 (426)
T 3c75_H          278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR------------------QSDRIYLLVDQ  339 (426)
T ss_dssp             EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG------------------GGTEEEEEEEE
T ss_pred             EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC------------------CCCEEEEEecc
Confidence            88777888999999986543210  0000   00       0000123333                  2334444321 


Q ss_pred             ---------CCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCccceee
Q psy226          313 ---------DKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK-YLVSCG-DDKTLRVWDTANKRNMKTL  372 (406)
Q Consensus       313 ---------d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~-~l~sgs-~d~~i~vwd~~~~~~~~~l  372 (406)
                               ++.|.++|+.+.+.+.++... ....++.|+|+|+ ++++.. .++.|.|+|..+++.++++
T Consensus       340 ~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          340 RDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             cccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence                     357999999999998887532 2477899999999 888877 5999999999999988886

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.45  E-value=3e-11  Score=121.20  Aligned_cols=273  Identities=13%  Similarity=0.063  Sum_probs=167.8

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEeccc--ccCeeeEEECC---CCCEEEEEe------CCCcEEEEeCCCCeEEEEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGH--LDSVQDIAFDQ---SGKLLVSCS------ADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h--~~~V~~l~~~~---~g~~l~sgs------~d~~i~vwd~~~~~~~~~~  186 (406)
                      +..|+.++.|+.|..+|..+|+........  ......+..+|   ++. ++.++      .++.|..||..+++.+..+
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            467888999999999999999987665432  11111111122   444 44443      3689999999999988766


Q ss_pred             ecC--C-----------------------------cceEEEEEecCCCEEEEEeCCCc-------------------EEE
Q psy226          187 QGH--D-----------------------------HNVTGVAFLPNSDFVLSASRDKT-------------------IKM  216 (406)
Q Consensus       187 ~~h--~-----------------------------~~v~~~~~~p~~~~l~s~s~d~~-------------------i~i  216 (406)
                      ...  .                             .....+++.|++++++.++.++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            421  0                             01125788998899999888764                   999


Q ss_pred             EEcCCCeEEEEeec--CCc-------cEEEEEECCCCC---EEEEEeCCCeEEEEeCCCccceeEEecCC-ceEEEEE--
Q psy226          217 WEVATGYCVKTLTG--HRE-------WVRQIKVSPDGT---LLASCSNDHTARVWSLATKETKAELRGHD-HTVECVA--  281 (406)
Q Consensus       217 wd~~~~~~~~~~~~--~~~-------~v~~l~~~~~~~---~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~--  281 (406)
                      +|..+|+.+..++.  |..       .........+|+   .++.++.+|.++++|..+++.+....... .....+.  
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            99999998887764  321       111222223564   78899999999999999988764332111 0000000  


Q ss_pred             ---------------------eCCCCCccccccccCCCCCCCCCCEEEEEe-----------------------------
Q psy226          282 ---------------------WAPGVASESISEAAGRPPGQGGGPYLATGS-----------------------------  311 (406)
Q Consensus       282 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-----------------------------  311 (406)
                                           ..|......   .......++...++++..                             
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~---~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  436 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAH---DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT  436 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSS---CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred             CCCcccchhhccccCCCCeeEeCCCccccc---CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence                                 000000000   000000001112222221                             


Q ss_pred             ----------------CCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc
Q psy226          312 ----------------RDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH  375 (406)
Q Consensus       312 ----------------~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h  375 (406)
                                      .+|.|+.||+.+|+.+..+..+.... .-.+...+..|+.|+.||.++.||..+++.+-++...
T Consensus       437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~-~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN-GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             CCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC-CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc-CccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence                            14789999999999988876654332 2355567889999999999999999999998777654


Q ss_pred             cce-EEEEEEeCCCC-EEEEee
Q psy226          376 SHF-VTSLDFHRAHP-YVVTGS  395 (406)
Q Consensus       376 ~~~-v~~l~~~~~~~-~l~sgs  395 (406)
                      ... -.-+.|..+|+ |+++.+
T Consensus       516 ~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          516 SGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             SCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCcccCceEEEECCEEEEEEEe
Confidence            322 23466777776 555443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.44  E-value=8.3e-12  Score=114.93  Aligned_cols=245  Identities=10%  Similarity=-0.029  Sum_probs=162.1

Q ss_pred             cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEEecCC-------c
Q psy226          129 TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS----------ADMSLKLWDMSTYQCLKTMQGHD-------H  191 (406)
Q Consensus       129 ~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs----------~d~~i~vwd~~~~~~~~~~~~h~-------~  191 (406)
                      +|.+.|..+++.+.++.....+  .+.++|+|++++++.          .+++|.+||..+++.+.++....       .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            8889999999999888755555  799999999998886          36899999999999998886431       2


Q ss_pred             ceEEEEEecCCCEEEEEeC--CCcEEE--EEcCCCeEEEEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEeCCC---
Q psy226          192 NVTGVAFLPNSDFVLSASR--DKTIKM--WEVATGYCVKTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLAT---  263 (406)
Q Consensus       192 ~v~~~~~~p~~~~l~s~s~--d~~i~i--wd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~vwd~~~---  263 (406)
                      ....+.|+|+|++++++..  +..+.+  +|..+   +..+.....    ..+.|+| ..+++.+.|+.+.+.|+.+   
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~  197 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence            3457899999999988864  467888  99877   344421111    1123444 3455666788888888865   


Q ss_pred             --ccceeE----EecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCe--EEEEEeC---
Q psy226          264 --KETKAE----LRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS--LLFTLIG---  332 (406)
Q Consensus       264 --~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~--~~~~~~~---  332 (406)
                        ++....    +.....+.   . .+                  .+..++..+. +.|.+.|+.++.  .+..+.-   
T Consensus       198 ~~~~v~~~~t~~i~vg~~P~---~-~~------------------~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~  254 (368)
T 1mda_H          198 AAGIVGAQCTGAQNCSSQAA---Q-AN------------------YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNES  254 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCE---E-ET------------------TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCT
T ss_pred             cCCeEEEEeeeeeeCCCCcc---c-cc------------------cCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccc
Confidence              221100    00000111   1 11                  2233444444 889999986532  2222110   


Q ss_pred             ----CC---cCEEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCccceeeccccceEEEEEEeCCCC-EEEEee
Q psy226          333 ----HD---NWVRGVTFHPGGKYLVSCGD---------DKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP-YVVTGS  395 (406)
Q Consensus       333 ----h~---~~v~~l~~s~~g~~l~sgs~---------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~-~l~sgs  395 (406)
                          +.   .....++|+|+|+.++.+..         ++.+.++|..+.+.+.++.... ....++|+|+++ ++++..
T Consensus       255 ~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~  333 (368)
T 1mda_H          255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANS  333 (368)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEE
T ss_pred             cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEcc
Confidence                00   11122689999988876532         2356699999999988887544 578999999997 566666


Q ss_pred             -CCCeEEEeecC
Q psy226          396 -VDKTVKVWECR  406 (406)
Q Consensus       396 -~Dg~v~iw~~~  406 (406)
                       .++.|.++|..
T Consensus       334 ~~~~~VsVID~~  345 (368)
T 1mda_H          334 AGTEVLDIYDAA  345 (368)
T ss_dssp             TTTTEEEEEESS
T ss_pred             CCCCeEEEEECC
Confidence             59999999963

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.44  E-value=2.9e-11  Score=121.28  Aligned_cols=277  Identities=14%  Similarity=0.108  Sum_probs=179.3

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccccC----------e-eeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHLDS----------V-QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~----------V-~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      +..|+.++.++.|.-+|..+|+.+-.+..+...          + ..+++  .+..++.++.|+.+..+|..+++.+...
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            567778888999999999999988776543221          1 11222  3568888999999999999999988766


Q ss_pred             ecC--CcceEEEEEec--CCCEEEEEe------CCCcEEEEEcCCCeEEEEeecCC------------------------
Q psy226          187 QGH--DHNVTGVAFLP--NSDFVLSAS------RDKTIKMWEVATGYCVKTLTGHR------------------------  232 (406)
Q Consensus       187 ~~h--~~~v~~~~~~p--~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~~~~------------------------  232 (406)
                      ...  ......+...|  .+..++.++      .++.|..||..+|+.+..+....                        
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence            542  11111111111  134455543      37899999999999887764210                        


Q ss_pred             -------ccEEEEEECCCCCEEEEEeCCCe-------------------EEEEeCCCccceeEEecCCceEEEEEeCCCC
Q psy226          233 -------EWVRQIKVSPDGTLLASCSNDHT-------------------ARVWSLATKETKAELRGHDHTVECVAWAPGV  286 (406)
Q Consensus       233 -------~~v~~l~~~~~~~~l~s~~~d~~-------------------v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  286 (406)
                             .....++++|++.+++.++.++.                   |..+|..+++.+-.+....+..    |..+.
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~----wd~~~  303 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA----WDYTA  303 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC----SCCCC
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc----ccccC
Confidence                   00125788898899999888764                   9999999988776554321110    00000


Q ss_pred             CccccccccCCCCCCCCC---CEEEEEeCCCcEEEEECCCCeEEEEEeCC-CcCE-------------------------
Q psy226          287 ASESISEAAGRPPGQGGG---PYLATGSRDKTIKLWDVGSGSLLFTLIGH-DNWV-------------------------  337 (406)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~---~~l~s~~~d~~i~lwd~~~~~~~~~~~~h-~~~v-------------------------  337 (406)
                      ....+...     ...+|   ..++.++.+|.++++|..+|+.+....-. ..+.                         
T Consensus       304 ~~~~~l~d-----~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~  378 (689)
T 1yiq_A          304 TQHMILAE-----LPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR  378 (689)
T ss_dssp             CSCEEEEE-----EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC
T ss_pred             CCCcEEEe-----eccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe
Confidence            00000000     00012   36888999999999999999987543211 1111                         


Q ss_pred             -------------EEEEEcCCCCEEEEEeC---------------------------------------------CCeEE
Q psy226          338 -------------RGVTFHPGGKYLVSCGD---------------------------------------------DKTLR  359 (406)
Q Consensus       338 -------------~~l~~s~~g~~l~sgs~---------------------------------------------d~~i~  359 (406)
                                   ..++|+|+...+++...                                             +|.|+
T Consensus       379 ~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~  458 (689)
T 1yiq_A          379 NLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLI  458 (689)
T ss_dssp             EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEE
T ss_pred             eEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEE
Confidence                         12688998888776532                                             37899


Q ss_pred             EEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       360 vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      .||..+++.+-++..+. .+..-.+...+.+++.|+.||.++.||.+
T Consensus       459 A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~  504 (689)
T 1yiq_A          459 AWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAAD  504 (689)
T ss_dssp             EEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             EEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECC
Confidence            99999998776665443 23333566678899999999999999964

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.43  E-value=4.9e-11  Score=119.36  Aligned_cols=275  Identities=12%  Similarity=0.094  Sum_probs=182.3

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccccC-----------eeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHLDS-----------VQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~-----------V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      +..|+.++.++.|.-+|..+|+.+-.+......           ...+++  .+..|+.++.|+.+..+|..+++.+..+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            567777788999999999999988766533210           122333  4568888999999999999999988877


Q ss_pred             ecC-C----cceEEEEEecCCCEEEEEeC------CCcEEEEEcCCCeEEEEeecCCcc---------------------
Q psy226          187 QGH-D----HNVTGVAFLPNSDFVLSASR------DKTIKMWEVATGYCVKTLTGHREW---------------------  234 (406)
Q Consensus       187 ~~h-~----~~v~~~~~~p~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~~~~---------------------  234 (406)
                      ..+ .    ..+.+.-.. .+..++.++.      ++.|+.+|..+|+.+..+......                     
T Consensus       155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g  233 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence            654 2    122211111 2455665553      789999999999988776532211                     


Q ss_pred             -----------EEEEEECCCCCEEEEEeCCC-------------------eEEEEeCCCccceeEEecCCceEEEEEeCC
Q psy226          235 -----------VRQIKVSPDGTLLASCSNDH-------------------TARVWSLATKETKAELRGHDHTVECVAWAP  284 (406)
Q Consensus       235 -----------v~~l~~~~~~~~l~s~~~d~-------------------~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~  284 (406)
                                 ...++++|++.+++.++.++                   .|..+|..+++.+-.+....+..    |.-
T Consensus       234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~----wd~  309 (677)
T 1kb0_A          234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDN----WDY  309 (677)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC----SCC
T ss_pred             ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcc----ccc
Confidence                       13578889988888887664                   58899998887765544311100    000


Q ss_pred             CC-CccccccccCCCCCCCCC---CEEEEEeCCCcEEEEECCCCeEEEEEeCCC-cCE----------------------
Q psy226          285 GV-ASESISEAAGRPPGQGGG---PYLATGSRDKTIKLWDVGSGSLLFTLIGHD-NWV----------------------  337 (406)
Q Consensus       285 ~~-~~~~~~~~~~~~~~~~~~---~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~-~~v----------------------  337 (406)
                      +. ....+...      ..+|   ..++.++.+|.+.++|..+|+.+..+.-.. .+.                      
T Consensus       310 ~~~~~p~l~~~------~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~  383 (677)
T 1kb0_A          310 TSTQPMILADI------KIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQ  383 (677)
T ss_dssp             CCCSCCEEEEE------EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCE
T ss_pred             ccCCCcEEEec------ccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCcc
Confidence            00 00000000      0023   578899999999999999999887654211 111                      


Q ss_pred             ------------EEEEEcCCCCEEEEEeC-------------------------------------------CCeEEEEe
Q psy226          338 ------------RGVTFHPGGKYLVSCGD-------------------------------------------DKTLRVWD  362 (406)
Q Consensus       338 ------------~~l~~s~~g~~l~sgs~-------------------------------------------d~~i~vwd  362 (406)
                                  ..++|+|++..+++...                                           .|.|..||
T Consensus       384 ~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D  463 (677)
T 1kb0_A          384 DAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD  463 (677)
T ss_dssp             ECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred             EECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence                        14688998888877543                                           27899999


Q ss_pred             CCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          363 TANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       363 ~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ..+++.+-++.. ...+....+...+.+++.|+.||.+++||.+
T Consensus       464 ~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          464 PVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             TTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             CCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence            999987665542 2334445566778889999999999999963

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.42  E-value=3.1e-10  Score=105.47  Aligned_cols=258  Identities=9%  Similarity=0.012  Sum_probs=168.7

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcce---
Q psy226          117 VFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNV---  193 (406)
Q Consensus       117 ~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v---  193 (406)
                      ++..++.++.++.|..+|..+|+..................  +..++.++.++.+..+|..+++.+..........   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            35677888899999999999998876655432222222222  4578888899999999999998877665432211   


Q ss_pred             --EEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCcc-------EEEEEECC--CCCEEEEEeCCCeEEEEeCC
Q psy226          194 --TGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREW-------VRQIKVSP--DGTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       194 --~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-------v~~l~~~~--~~~~l~s~~~d~~v~vwd~~  262 (406)
                        .....  .+..++.++.++.+..+|..+|..+.........       +..+...|  .+..++.++.++.+..+|..
T Consensus       180 ~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~  257 (376)
T 3q7m_A          180 GESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR  257 (376)
T ss_dssp             CCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred             CCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence              11222  2457888888999999999999887665432110       00011111  24677788889999999998


Q ss_pred             CccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC-CCcCEEEEE
Q psy226          263 TKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG-HDNWVRGVT  341 (406)
Q Consensus       263 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~-h~~~v~~l~  341 (406)
                      +++.+-.....  .......                    .+..++.++.++.|..+|..+|+.+..... ....+....
T Consensus       258 tG~~~w~~~~~--~~~~~~~--------------------~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~  315 (376)
T 3q7m_A          258 SGQIMWKRELG--SVNDFIV--------------------DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV  315 (376)
T ss_dssp             TCCEEEEECCC--CEEEEEE--------------------ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCE
T ss_pred             CCcEEeeccCC--CCCCceE--------------------ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCE
Confidence            88765443311  1122211                    234677888899999999999998877652 222222223


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEE-EEEEeCCCCEEEEeeCCCeEEEee
Q psy226          342 FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVT-SLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       342 ~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~-~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      .  .+..|+.++.+|.|+++|..+++.+.........+. ....  .+..|..++.||.|..|+
T Consensus       316 ~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          316 L--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             E--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            2  256788899999999999999987766554222222 1222  245677889999999987

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.40  E-value=7.1e-11  Score=118.20  Aligned_cols=270  Identities=9%  Similarity=-0.017  Sum_probs=170.3

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEeccc-c----cCeee-EEECCCCCEEEEEeC------CCcEEEEeCCCCeEEEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGH-L----DSVQD-IAFDQSGKLLVSCSA------DMSLKLWDMSTYQCLKT  185 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h-~----~~V~~-l~~~~~g~~l~sgs~------d~~i~vwd~~~~~~~~~  185 (406)
                      +..|+.++.|+.|..+|..+|+....+..+ .    ..+.+ ...  .+..++.++.      ++.|..+|..+++.+..
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            567888899999999999999988776644 1    12221 111  1345555543      68999999999998877


Q ss_pred             EecCCcc--------------------------------eEEEEEecCCCEEEEEeCCC-------------------cE
Q psy226          186 MQGHDHN--------------------------------VTGVAFLPNSDFVLSASRDK-------------------TI  214 (406)
Q Consensus       186 ~~~h~~~--------------------------------v~~~~~~p~~~~l~s~s~d~-------------------~i  214 (406)
                      +......                                ...+++.|+++.++.++.++                   +|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv  285 (677)
T 1kb0_A          206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI  285 (677)
T ss_dssp             EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence            6542211                                12578899999888887664                   59


Q ss_pred             EEEEcCCCeEEEEeec--CCc-------cEEEEEECCCC---CEEEEEeCCCeEEEEeCCCccceeEEecCCce-EEEE-
Q psy226          215 KMWEVATGYCVKTLTG--HRE-------WVRQIKVSPDG---TLLASCSNDHTARVWSLATKETKAELRGHDHT-VECV-  280 (406)
Q Consensus       215 ~iwd~~~~~~~~~~~~--~~~-------~v~~l~~~~~~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-v~~~-  280 (406)
                      ..+|..+|+.+..++.  |..       ....+....+|   ..++.++.+|.++++|..+++.+........+ ...+ 
T Consensus       286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d  365 (677)
T 1kb0_A          286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD  365 (677)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred             EEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence            9999999998877653  321       12222333467   67899999999999999998876654422110 1000 


Q ss_pred             ------------------EeCCCCCccccccccCCCCCCCCCCEEEEEeC------------------------------
Q psy226          281 ------------------AWAPGVASESISEAAGRPPGQGGGPYLATGSR------------------------------  312 (406)
Q Consensus       281 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------------------------------  312 (406)
                                        ...|......   .......++...++++...                              
T Consensus       366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~---~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          366 KHGKPIGIAAARDGSKPQDAVPGPYGAH---NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             TTSCEEECGGGGCTTSCEECSSCTTCSS---CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             CCCceeeccccCcCCCccEECcCccccc---CCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence                              0011000000   0000000112233333322                              


Q ss_pred             -------------CCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecccc-ce
Q psy226          313 -------------DKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS-HF  378 (406)
Q Consensus       313 -------------d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~-~~  378 (406)
                                   .+.|..||+.+++.+..+... ..+.+..+...+..++.++.||.+++||..+++.+.++.... ..
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~  521 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV  521 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             ccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcc
Confidence                         278999999999988776533 233444566678889999999999999999999988886433 22


Q ss_pred             EEEEEEeCCCC-EEEE
Q psy226          379 VTSLDFHRAHP-YVVT  393 (406)
Q Consensus       379 v~~l~~~~~~~-~l~s  393 (406)
                      -.-+.|.++|+ ++++
T Consensus       522 ~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          522 AAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             SCCEEEEETTEEEEEE
T ss_pred             cCCEEEEeCCEEEEEE
Confidence            23455667776 4444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.40  E-value=1.4e-09  Score=100.98  Aligned_cols=263  Identities=9%  Similarity=0.039  Sum_probs=168.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEeccc---------ccCeee-EEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGH---------LDSVQD-IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h---------~~~V~~-l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      +..++.++.++.|..+|..+|+........         ...+.+ +..  ++..++.++.++.|..+|..+++.+....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            567888888999999999999877655432         122222 222  45678888999999999999998876665


Q ss_pred             cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccE-----EEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy226          188 GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWV-----RQIKVSPDGTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       188 ~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~l~s~~~d~~v~vwd~~  262 (406)
                      ...........  .+..++.++.++.|..+|..+|+.+..........     ......  +..++.++.++.+..+|..
T Consensus       131 ~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          131 VAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME  206 (376)
T ss_dssp             CSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT
T ss_pred             CCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC
Confidence            44322222222  24578888999999999999998877765432211     111121  4467778889999999998


Q ss_pred             CccceeEEecCCce----EEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEE
Q psy226          263 TKETKAELRGHDHT----VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVR  338 (406)
Q Consensus       263 ~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~  338 (406)
                      +++.+-........    +..+.           .....+.  ..+..++.++.++.+..+|..+|+.+.....  ....
T Consensus       207 tG~~~w~~~~~~~~~~~~~~~~~-----------~~~~~p~--~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~  271 (376)
T 3q7m_A          207 QGQMIWQQRISQATGSTEIDRLS-----------DVDTTPV--VVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVN  271 (376)
T ss_dssp             TCCEEEEEECCC----------------------CCCCCCE--EETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEE
T ss_pred             CCcEEEEEecccCCCCccccccc-----------ccCCCcE--EECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCC
Confidence            88765444321110    00000           0000000  0234677788899999999999998876543  2234


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc-ccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          339 GVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA-HSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       339 ~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~-h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .+..  ++..|+.++.++.|..+|..+++.+-.... ....+.....  .+..|..++.+|.+..+|.
T Consensus       272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~  335 (376)
T 3q7m_A          272 DFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINV  335 (376)
T ss_dssp             EEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEET
T ss_pred             CceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEEC
Confidence            4443  366788888899999999999886644431 1122222222  2457888888999998885

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.37  E-value=4e-11  Score=110.18  Aligned_cols=227  Identities=12%  Similarity=0.074  Sum_probs=150.0

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEEcCCCcEEEEeccc------ccCeeeEEECCCCCEE-EEEe---C
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSE-----DATIRLWDYETGEYERALHGH------LDSVQDIAFDQSGKLL-VSCS---A  168 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~-----dg~v~vwd~~~~~~~~~~~~h------~~~V~~l~~~~~g~~l-~sgs---~  168 (406)
                      +|...+..++++|+++++++-..     ++.|.+||..+++....+...      ...+.++++++++..+ ++.+   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            46678999999999987776544     689999999999877665432      2356899999865444 5554   5


Q ss_pred             CCcEEEEeCCCCeEEEEEecCCcceE-EEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEE
Q psy226          169 DMSLKLWDMSTYQCLKTMQGHDHNVT-GVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLL  247 (406)
Q Consensus       169 d~~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  247 (406)
                      ++.|.+||+.+++..+.+.+|..... ...+.+++..+.+.+.+++++.|..              .+..++++|+|+.|
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~l  209 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWL  209 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceec--------------ccceeEeccCCCEE
Confidence            78999999998887766655432111 1345567777777788888766631              25679999999988


Q ss_pred             EEEeCCC-eEEEEeCCC---ccc-----ee--EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcE
Q psy226          248 ASCSNDH-TARVWSLAT---KET-----KA--ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTI  316 (406)
Q Consensus       248 ~s~~~d~-~v~vwd~~~---~~~-----~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  316 (406)
                      +.+..++ .+..++...   ...     ..  ...++......+++.+                  +|.++++...++.|
T Consensus       210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~------------------~G~l~va~~~~~~V  271 (343)
T 2qe8_A          210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK------------------DHNIYVGDLAHSAI  271 (343)
T ss_dssp             EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT------------------TCCEEEEEGGGTEE
T ss_pred             EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC------------------CCCEEEEccCCCeE
Confidence            8887665 444444311   000     00  0111111222344433                  46788888888999


Q ss_pred             EEEECCCCeEEEEEeC-CCcCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q psy226          317 KLWDVGSGSLLFTLIG-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWD  362 (406)
Q Consensus       317 ~lwd~~~~~~~~~~~~-h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd  362 (406)
                      .+||..+++....... +...+.+++|+++|+++++.+..+.+-+|.
T Consensus       272 ~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          272 GVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             EEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            9999866664333322 245789999999998888877665554443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.37  E-value=2e-13  Score=126.86  Aligned_cols=204  Identities=16%  Similarity=0.058  Sum_probs=119.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCc-cEE-
Q psy226          159 SGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE-WVR-  236 (406)
Q Consensus       159 ~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~v~-  236 (406)
                      ++..+++++.|+.|..||..+++.+..+..  ..+.+..+.+++..+++++.|+.|+.||..+|+.+.....+.. .+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567899999999999999999999888776  4555555666777788888999999999999887666543321 110 


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcE
Q psy226          237 QIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTI  316 (406)
Q Consensus       237 ~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  316 (406)
                      ...+. ++..+++|+.|+.++.||..+++.+..+..+..    ..++|                  .+..+++++.|+.|
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p------------------~~~~v~~~~~dg~v  142 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP------------------STSLLYLGRTEYTI  142 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------------------------EEEEEEEEEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc------------------cCCEEEEEecCCEE
Confidence            00111 345677888899999999998877655543321    11222                  34578888999999


Q ss_pred             EEEECCCCeEEEEEeCCCcCEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCC
Q psy226          317 KLWDVGSGSLLFTLIGHDNWVRGVTFHPGG---KYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP  389 (406)
Q Consensus       317 ~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g---~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~  389 (406)
                      +.||.++|+.+..+..+.  ....+++++.   ..+++++.||.|+.||..+++.+-+.......+....+++++.
T Consensus       143 ~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          143 TMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             ECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred             EEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence            999999998765543211  1223333332   5677789999999999999987666554333334444555553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.35  E-value=4.5e-11  Score=110.08  Aligned_cols=244  Identities=12%  Similarity=0.005  Sum_probs=158.1

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcEEEEeccc-------ccCeeeEEECCCCCEEEEEeC--CCc
Q psy226          111 KVIFHPVFSLMASCS----------EDATIRLWDYETGEYERALHGH-------LDSVQDIAFDQSGKLLVSCSA--DMS  171 (406)
Q Consensus       111 ~v~~~p~~~~latgs----------~dg~v~vwd~~~~~~~~~~~~h-------~~~V~~l~~~~~g~~l~sgs~--d~~  171 (406)
                      .++|+|+++.++.+.          .+++|.+||..+++....+..+       ......++++|||++|+++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999888886          3789999999999998887643       134678999999999998874  457


Q ss_pred             EEE--EeCCCCeEEEEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcCC-----CeEEEE----eecCCccEEEEE
Q psy226          172 LKL--WDMSTYQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVAT-----GYCVKT----LTGHREWVRQIK  239 (406)
Q Consensus       172 i~v--wd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~~-----~~~~~~----~~~~~~~v~~l~  239 (406)
                      +.+  +|..+   +..+..- ..   ..+.|+++ .+++.+.|+.+.+.|+.+     ++....    +.-...+.   .
T Consensus       149 v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~  218 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q  218 (368)
T ss_dssp             EEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E
T ss_pred             EEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c
Confidence            888  99876   3444321 11   12345443 455667788888888876     332211    11112222   3


Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCccc--eeEEec-------CCc---eEEEEEeCCCCCccccccccCCCCCCCCCCEE
Q psy226          240 VSPDGTLLASCSNDHTARVWSLATKET--KAELRG-------HDH---TVECVAWAPGVASESISEAAGRPPGQGGGPYL  307 (406)
Q Consensus       240 ~~~~~~~l~s~~~d~~v~vwd~~~~~~--~~~~~~-------~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  307 (406)
                       .+++..++..+. +.+.+.|+.+...  ...+..       +..   ....+.+.|                  ++..+
T Consensus       219 -~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~------------------dg~~l  278 (368)
T 1mda_H          219 -ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK------------------NTDGI  278 (368)
T ss_dssp             -ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET------------------TTTEE
T ss_pred             -cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC------------------CCCEE
Confidence             555666655556 8999999865321  111100       000   001134444                  34445


Q ss_pred             EEEeC---------CCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCC-EEEEEe-CCCeEEEEeCCCCccceeecccc
Q psy226          308 ATGSR---------DKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK-YLVSCG-DDKTLRVWDTANKRNMKTLEAHS  376 (406)
Q Consensus       308 ~s~~~---------d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~-~l~sgs-~d~~i~vwd~~~~~~~~~l~~h~  376 (406)
                      +.+..         ++.+.++|+.+.+.+..+.... ...+++|+|+|+ .+++.. .++.|.|+|+.+.+.++++....
T Consensus       279 yV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~  357 (368)
T 1mda_H          279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             EEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             EEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence            54322         2356699999999887765433 578999999998 456666 59999999999999998887554


Q ss_pred             ceEEEEEEeC
Q psy226          377 HFVTSLDFHR  386 (406)
Q Consensus       377 ~~v~~l~~~~  386 (406)
                      . ...+++++
T Consensus       358 ~-P~~i~~~~  366 (368)
T 1mda_H          358 G-PESLSVQN  366 (368)
T ss_dssp             C-CCEEECCC
T ss_pred             C-CCEEEeec
Confidence            3 34555544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.34  E-value=5.1e-11  Score=108.38  Aligned_cols=261  Identities=10%  Similarity=0.008  Sum_probs=166.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      .+.++...+++.+.+ ++.+  |..+|. +++....+...........+.  +..|..++.++.+..+|.. ++......
T Consensus        61 ~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~  133 (330)
T 3hxj_A           61 IECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK  133 (330)
T ss_dssp             EEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred             cccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc
Confidence            345666666665444 4444  888885 554332222222223333333  4567788889999999988 77666665


Q ss_pred             cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccce
Q psy226          188 GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETK  267 (406)
Q Consensus       188 ~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~  267 (406)
                      .....+.++...+++. +..++.++.|..+|.. +.....+......+.++...+++.++++.   +.+..+| .++...
T Consensus       134 ~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~  207 (330)
T 3hxj_A          134 TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEK  207 (330)
T ss_dssp             CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEE
T ss_pred             CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEE
Confidence            5555566666766665 6667788999999998 87777766666667778888888765544   8899999 555544


Q ss_pred             eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCC
Q psy226          268 AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK  347 (406)
Q Consensus       268 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~  347 (406)
                      .........+.++...+                  ++ .+..++.++.|..+|. ++..+..+......+..+.+.++|.
T Consensus       208 ~~~~~~~~~~~~~~~~~------------------~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~  267 (330)
T 3hxj_A          208 WNFYAGYWTVTRPAISE------------------DG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT  267 (330)
T ss_dssp             EEECCSSCCCSCCEECT------------------TS-CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC
T ss_pred             EEEccCCcceeceEECC------------------CC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe
Confidence            33332222222222221                  23 4666777888888874 6666666655444455566666664


Q ss_pred             EEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          348 YLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       348 ~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                       |..++.+|.|..+|. +++.+..+......+.++...+++.+. .|+.+|.+.+..
T Consensus       268 -l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~  321 (330)
T 3hxj_A          268 -IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALF  321 (330)
T ss_dssp             -EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEE
T ss_pred             -EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEe
Confidence             566778888999996 666655555445567777787887654 488899988764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.27  E-value=5.1e-11  Score=108.36  Aligned_cols=255  Identities=12%  Similarity=0.053  Sum_probs=161.4

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcce
Q psy226          114 FHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNV  193 (406)
Q Consensus       114 ~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v  193 (406)
                      +.+++ .+..++.++.|..|| .+++.......+...+.++...++|. |..++.+  +..+|. +++.+..........
T Consensus        27 ~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~  100 (330)
T 3hxj_A           27 LAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIV  100 (330)
T ss_dssp             ECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----
T ss_pred             EccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcc
Confidence            43444 456677888999999 88887666555555667788877775 4444444  888886 444322222112122


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecC
Q psy226          194 TGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH  273 (406)
Q Consensus       194 ~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~  273 (406)
                      ....+.  +..+..++.++.|..+|.. +........+...+.++...+++. ++.++.++.+..+|.. +.........
T Consensus       101 ~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~  175 (330)
T 3hxj_A          101 SDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN  175 (330)
T ss_dssp             CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS
T ss_pred             cCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC
Confidence            223333  5677888889999999988 777766666656667777777777 5567788999999987 5544443322


Q ss_pred             CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEe
Q psy226          274 DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCG  353 (406)
Q Consensus       274 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs  353 (406)
                      ...+.++...                  .++. +..++  +.|..+| .+++....+......+.++..+++|.. ..++
T Consensus       176 ~~~~~~~~~d------------------~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t  232 (330)
T 3hxj_A          176 DAITSAASIG------------------KDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTS  232 (330)
T ss_dssp             SCCCSCCEEC------------------TTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEE
T ss_pred             CCceeeeEEc------------------CCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEc
Confidence            2222211111                  1344 44444  7899999 788877777666667888888888765 4566


Q ss_pred             CCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          354 DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       354 ~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      .++.|..+|. +++.+..+......+.++.+.+++. |..++.+|.|..+|
T Consensus       233 ~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          233 LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAIN  281 (330)
T ss_dssp             TTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred             CCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence            6788888874 4555544444433344556665664 55577787787776

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.26  E-value=2.6e-08  Score=87.74  Aligned_cols=250  Identities=11%  Similarity=0.009  Sum_probs=150.7

Q ss_pred             EEEEEeCCCcEEEEEcCCCcE-----EEEecccccCeeeEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEecCCcce
Q psy226          120 LMASCSEDATIRLWDYETGEY-----ERALHGHLDSVQDIAFDQSGKLLVSC-SADMSLKLWDMSTYQCLKTMQGHDHNV  193 (406)
Q Consensus       120 ~latgs~dg~v~vwd~~~~~~-----~~~~~~h~~~V~~l~~~~~g~~l~sg-s~d~~i~vwd~~~~~~~~~~~~h~~~v  193 (406)
                      +|..+.. +.|+.+++.....     ...+......+.+++|++++..|+.+ ..++.|..++..+..............
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p   81 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence            3444332 4788888776532     11222223457789999976655544 456899999987654433333223467


Q ss_pred             EEEEEecCCCEEEEE-eCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC---CCeEEEEeCCCccceeE
Q psy226          194 TGVAFLPNSDFVLSA-SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN---DHTARVWSLATKETKAE  269 (406)
Q Consensus       194 ~~~~~~p~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~---d~~v~vwd~~~~~~~~~  269 (406)
                      .++++.|++..|+.+ ...+.|.+++...................++++|++..+..+..   .+.|..+++........
T Consensus        82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~  161 (267)
T 1npe_A           82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE
Confidence            899999976655544 45678999998644322222222245688999996555544443   46888888764332211


Q ss_pred             EecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEE
Q psy226          270 LRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYL  349 (406)
Q Consensus       270 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l  349 (406)
                      ..........+++.|+                 ++.+.++-...+.|..+|.........+.+ ......++.. .+..+
T Consensus       162 ~~~~~~~P~gia~d~~-----------------~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~ly  222 (267)
T 1npe_A          162 AQDNLGLPNGLTFDAF-----------------SSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLY  222 (267)
T ss_dssp             ECTTCSCEEEEEEETT-----------------TTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEE
T ss_pred             EECCCCCCcEEEEcCC-----------------CCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEE
Confidence            2122234566777652                 233445555667899999875443333332 2345677764 34444


Q ss_pred             EEEeCCCeEEEEeCCCCccceeecccc-ceEEEEEEeCCCC
Q psy226          350 VSCGDDKTLRVWDTANKRNMKTLEAHS-HFVTSLDFHRAHP  389 (406)
Q Consensus       350 ~sgs~d~~i~vwd~~~~~~~~~l~~h~-~~v~~l~~~~~~~  389 (406)
                      ++...++.|.++|..+++.+.++.... .....+++.|+++
T Consensus       223 va~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          223 YTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            454566899999999988888876433 2356788888765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.19  E-value=2.2e-09  Score=103.00  Aligned_cols=255  Identities=11%  Similarity=0.069  Sum_probs=164.8

Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEEecc---------------------------------cc------cCeeeEEECC--
Q psy226          120 LMASCSEDATIRLWDYETGEYERALHG---------------------------------HL------DSVQDIAFDQ--  158 (406)
Q Consensus       120 ~latgs~dg~v~vwd~~~~~~~~~~~~---------------------------------h~------~~V~~l~~~~--  158 (406)
                      .+.||+..|.|+|+-+.+++.++.+.-                                 +.      +.......|.  
T Consensus        17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~   96 (595)
T 1fwx_A           17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   96 (595)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred             EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence            466888999999999998887665421                                 00      1112244444  


Q ss_pred             ---CCCEEEEEeC-CCcEEEEeCCCCeEEEEEecC-CcceEEEEE-e-cCCCEEEEEe------------------CCCc
Q psy226          159 ---SGKLLVSCSA-DMSLKLWDMSTYQCLKTMQGH-DHNVTGVAF-L-PNSDFVLSAS------------------RDKT  213 (406)
Q Consensus       159 ---~g~~l~sgs~-d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~-~-p~~~~l~s~s------------------~d~~  213 (406)
                         ||++|..... +..|.+.|+.++++.+.+.-. ......+++ . |+++++++++                  .++.
T Consensus        97 g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           97 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence               7787777665 457999999999988855432 245788888 4 9999998884                  3467


Q ss_pred             EEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC---------------eEEEEe------------------
Q psy226          214 IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH---------------TARVWS------------------  260 (406)
Q Consensus       214 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~---------------~v~vwd------------------  260 (406)
                      +.+.|..+.+...++.-.. ....++++|+|+++++.+.+.               .+.+.|                  
T Consensus       177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            9999999988877765322 345678999999998888553               344444                  


Q ss_pred             -----CCC--ccc-eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe-CCCcEEEEECCCCe------
Q psy226          261 -----LAT--KET-KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS-RDKTIKLWDVGSGS------  325 (406)
Q Consensus       261 -----~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~lwd~~~~~------  325 (406)
                           ..+  ... ...+.. .....++.++|                  +|+++++++ .+++|.++|+.+.+      
T Consensus       256 V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sP------------------DGk~v~V~~~~s~~VsVid~~~~~~~~~~~  316 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAP------------------DKKHLCVAGKLSPTVTVLDVTRFDAVFYEN  316 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEE-ESSCCCEEECT------------------TSSEEEEECTTSSBEEEEEGGGHHHHHHSC
T ss_pred             EEEEeCcccCCceeEEEEec-CCCceEEEEcC------------------CCCEEEEeCCCCCeEEEEECcccccccccc
Confidence                 332  111 111110 01112233333                  566655554 67899999998642      


Q ss_pred             ------EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------CccceeeccccceE-----EEEEE
Q psy226          326 ------LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN----------KRNMKTLEAHSHFV-----TSLDF  384 (406)
Q Consensus       326 ------~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~----------~~~~~~l~~h~~~v-----~~l~~  384 (406)
                            .+..+. -......++|+|+|...++.--|+.|.+||+..          .+.+.++..|-.+-     ..+.+
T Consensus       317 l~~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~  395 (595)
T 1fwx_A          317 ADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETL  395 (595)
T ss_dssp             CCGGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTST
T ss_pred             cCcccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEe
Confidence                  333332 234578899999994445667899999999876          45566666554321     12346


Q ss_pred             eCCCCEEEEee
Q psy226          385 HRAHPYVVTGS  395 (406)
Q Consensus       385 ~~~~~~l~sgs  395 (406)
                      +|||++|++..
T Consensus       396 ~~DGk~l~~~N  406 (595)
T 1fwx_A          396 DATNDWLVCLS  406 (595)
T ss_dssp             TCCSSEEEEEE
T ss_pred             CCCCCEEEEcC
Confidence            89999998753

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.18  E-value=1.8e-08  Score=93.55  Aligned_cols=229  Identities=7%  Similarity=0.074  Sum_probs=144.9

Q ss_pred             CCCCEEE-EEeCCCcEEEEEcCCC----cEEEEec-------ccccCeeeEEECCCCCEEEEEeCC------CcEEEEeC
Q psy226          116 PVFSLMA-SCSEDATIRLWDYETG----EYERALH-------GHLDSVQDIAFDQSGKLLVSCSAD------MSLKLWDM  177 (406)
Q Consensus       116 p~~~~la-tgs~dg~v~vwd~~~~----~~~~~~~-------~h~~~V~~l~~~~~g~~l~sgs~d------~~i~vwd~  177 (406)
                      ++.++|+ +|..+++|.|+|+.+.    +..+++.       .....-..+...|+| +++++..+      +.|.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            6766555 6777899999999765    5666663       011234567888999 77776665      78999999


Q ss_pred             CCCeEEEEEecCCcc---eEEEEEecCCCEEEEEe-------------------CCCcEEEEEcCCCeEEEEeecCC--c
Q psy226          178 STYQCLKTMQGHDHN---VTGVAFLPNSDFVLSAS-------------------RDKTIKMWEVATGYCVKTLTGHR--E  233 (406)
Q Consensus       178 ~~~~~~~~~~~h~~~---v~~~~~~p~~~~l~s~s-------------------~d~~i~iwd~~~~~~~~~~~~~~--~  233 (406)
                      .+++.+.++.....+   -..+.|+|+++.+++..                   .+.+|.+||+.+++.++++....  .
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            999998888632221   33578899999888874                   37899999999988888776531  2


Q ss_pred             cEEEEEE--CCCCCEEEEEe------CCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccc----------ccc
Q psy226          234 WVRQIKV--SPDGTLLASCS------NDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESIS----------EAA  295 (406)
Q Consensus       234 ~v~~l~~--~~~~~~l~s~~------~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----------~~~  295 (406)
                      ....+.|  +|+++++..++      .+++|.+|....+.- ...       ..+...+......+.          ...
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~-~~~-------~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW-NAE-------KVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE-EEE-------EEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce-eEE-------EEEeCCCccccccccccccccccCCCce
Confidence            3345555  99999877665      567888876643211 000       001110000000000          000


Q ss_pred             CCCCCCCCCCEEEEEeC-CCcEEEEECCC---CeEEEEEeCCC--------------cCEEEEEEcCCCCEEEEEe
Q psy226          296 GRPPGQGGGPYLATGSR-DKTIKLWDVGS---GSLLFTLIGHD--------------NWVRGVTFHPGGKYLVSCG  353 (406)
Q Consensus       296 ~~~~~~~~~~~l~s~~~-d~~i~lwd~~~---~~~~~~~~~h~--------------~~v~~l~~s~~g~~l~sgs  353 (406)
                      .......+|++|.++.. .+.|.+||+..   .+.+..+.-..              ..-..+.++|||++|+++.
T Consensus       324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            11112336778877765 67899999852   34554443210              1357899999999998887

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.17  E-value=1.2e-07  Score=88.03  Aligned_cols=219  Identities=13%  Similarity=0.082  Sum_probs=145.1

Q ss_pred             CCCCEEEE-EeCCCcEEEEeCCCC----eEEEEEec-------CCcceEEEEEecCCCEEEEEeCC------CcEEEEEc
Q psy226          158 QSGKLLVS-CSADMSLKLWDMSTY----QCLKTMQG-------HDHNVTGVAFLPNSDFVLSASRD------KTIKMWEV  219 (406)
Q Consensus       158 ~~g~~l~s-gs~d~~i~vwd~~~~----~~~~~~~~-------h~~~v~~~~~~p~~~~l~s~s~d------~~i~iwd~  219 (406)
                      .++++|+. |..++.|.++|+.+.    +..+++..       -...-..+...|+| .++++..+      +.|.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77777665 556789999999754    56666630       11134557788999 77776555      78999999


Q ss_pred             CCCeEEEEeecCC---ccEEEEEECCCCCEEEEEe-------------------CCCeEEEEeCCCccceeEEecC-C-c
Q psy226          220 ATGYCVKTLTGHR---EWVRQIKVSPDGTLLASCS-------------------NDHTARVWSLATKETKAELRGH-D-H  275 (406)
Q Consensus       220 ~~~~~~~~~~~~~---~~v~~l~~~~~~~~l~s~~-------------------~d~~v~vwd~~~~~~~~~~~~~-~-~  275 (406)
                      .+++.+.......   ..-..+.|+|+++.+++..                   .+.+|.+||+.+.+....+..- . .
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            9999888876322   2234578899999888874                   4789999999987666665542 1 2


Q ss_pred             eEEEEEe--CCCCCccccccccCCCCCCCCCCEEEEEe------CCCcEEEEECCCCeEE--EE--EeCC----------
Q psy226          276 TVECVAW--APGVASESISEAAGRPPGQGGGPYLATGS------RDKTIKLWDVGSGSLL--FT--LIGH----------  333 (406)
Q Consensus       276 ~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~------~d~~i~lwd~~~~~~~--~~--~~~h----------  333 (406)
                      ....+.|  +|                  ++.++++++      .+++|.+|....+...  ..  +...          
T Consensus       252 ~P~~i~f~~~P------------------dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~  313 (462)
T 2ece_A          252 MALELRPLHDP------------------TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEIL  313 (462)
T ss_dssp             EEEEEEECSST------------------TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGG
T ss_pred             ccceeEeeECC------------------CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccc
Confidence            2334444  55                  455666655      4567877655444311  11  1110          


Q ss_pred             ------CcCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC---ccceeecccc--------------ceEEEEEEeCCCC
Q psy226          334 ------DNWVRGVTFHPGGKYLVSCG-DDKTLRVWDTANK---RNMKTLEAHS--------------HFVTSLDFHRAHP  389 (406)
Q Consensus       334 ------~~~v~~l~~s~~g~~l~sgs-~d~~i~vwd~~~~---~~~~~l~~h~--------------~~v~~l~~~~~~~  389 (406)
                            ......+.+||||++|.++. ..+.|.++|+...   +.+..+....              ..-..++++|+|+
T Consensus       314 ~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk  393 (462)
T 2ece_A          314 KPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR  393 (462)
T ss_dssp             GGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS
T ss_pred             cccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC
Confidence                  23478899999999987665 4789999998633   3344443221              0247889999999


Q ss_pred             EEEEee
Q psy226          390 YVVTGS  395 (406)
Q Consensus       390 ~l~sgs  395 (406)
                      +|.++.
T Consensus       394 ~LyVaN  399 (462)
T 2ece_A          394 RVYVTN  399 (462)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            988776

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.16  E-value=7.6e-09  Score=103.41  Aligned_cols=275  Identities=13%  Similarity=0.124  Sum_probs=173.3

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccccC----------e-eeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHLDS----------V-QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~----------V-~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      +..|+.++.++.|.-+|..+|+.+-.+......          + ..+++  .+..++.++.|+.+..+|..+++.+...
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            567777888999999999999988776533211          1 12233  3567888899999999999999988776


Q ss_pred             ecCC----cceEE-EEEecCCCEEEEEeC------CCcEEEEEcCCCeEEEEeecC---Cc-------------------
Q psy226          187 QGHD----HNVTG-VAFLPNSDFVLSASR------DKTIKMWEVATGYCVKTLTGH---RE-------------------  233 (406)
Q Consensus       187 ~~h~----~~v~~-~~~~p~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~---~~-------------------  233 (406)
                      ....    ..+.+ ...  .+..++.+..      ++.|..+|..+|+.+..+...   ..                   
T Consensus       144 ~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             ECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             ccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            5421    11111 111  1345555543      589999999999988776521   00                   


Q ss_pred             ---------cEEEEEECCCCCEEEEEeCCCe-------------------EEEEeCCCccceeEEecCCceEEEEEeCCC
Q psy226          234 ---------WVRQIKVSPDGTLLASCSNDHT-------------------ARVWSLATKETKAELRGHDHTVECVAWAPG  285 (406)
Q Consensus       234 ---------~v~~l~~~~~~~~l~s~~~d~~-------------------v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  285 (406)
                               ....++++|++.+++.++.++.                   |..+|..+++.+-.+....+..    |..+
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~----wd~~  297 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDS----WDFT  297 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCC----SCCC
T ss_pred             eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcc----cccc
Confidence                     0124678888888888877663                   8999999888765554311100    0000


Q ss_pred             CCccccccccCCCCCCCCC---CEEEEEeCCCcEEEEECCCCeEEEEEeCCC-cCE------------------------
Q psy226          286 VASESISEAAGRPPGQGGG---PYLATGSRDKTIKLWDVGSGSLLFTLIGHD-NWV------------------------  337 (406)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~---~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~-~~v------------------------  337 (406)
                      .....+...     ...+|   ..++.++.+|.+.++|..+|+.+....-.. .+.                        
T Consensus       298 ~~~~~~~~d-----~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~  372 (668)
T 1kv9_A          298 ATQQITLAE-----LNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIV  372 (668)
T ss_dssp             CCSCEEEEE-----EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEE
T ss_pred             CCCCcEEEE-----eccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeE
Confidence            000000000     00012   268889999999999999999885433211 011                        


Q ss_pred             -----------EEEEEcCCCCEEEEE------------------------------------eCCCeEEEEeCCCCccce
Q psy226          338 -----------RGVTFHPGGKYLVSC------------------------------------GDDKTLRVWDTANKRNMK  370 (406)
Q Consensus       338 -----------~~l~~s~~g~~l~sg------------------------------------s~d~~i~vwd~~~~~~~~  370 (406)
                                 ..++++|+...++..                                    ..+|.|..||..+++.+-
T Consensus       373 ~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W  452 (668)
T 1kv9_A          373 MWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAW  452 (668)
T ss_dssp             ESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEE
T ss_pred             ECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEE
Confidence                       125778876665542                                    134889999999998765


Q ss_pred             eeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          371 TLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       371 ~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +...+. ......+...+.+|+.|+.||.++.||.+
T Consensus       453 ~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~  487 (668)
T 1kv9_A          453 KVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSAD  487 (668)
T ss_dssp             EEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             EccCCC-CCcCceeEeCCCEEEEECCcccchhhhhh
Confidence            554322 22333455567889999999999999853

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.11  E-value=9.6e-09  Score=102.69  Aligned_cols=275  Identities=13%  Similarity=0.084  Sum_probs=162.7

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccc----cCeee-EEECCCCCEEEEEeC------CCcEEEEeCCCCeEEEEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHL----DSVQD-IAFDQSGKLLVSCSA------DMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~----~~V~~-l~~~~~g~~l~sgs~------d~~i~vwd~~~~~~~~~~  186 (406)
                      +..++.++.|+.|..+|..+|+.........    ..+.+ ..+  .+..++.+..      ++.|..+|..+++.+..+
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            4578888899999999999999876654321    11111 111  1334555543      589999999999988776


Q ss_pred             ecC--C-c----------------------------ceEEEEEecCCCEEEEEeCCC-------------------cEEE
Q psy226          187 QGH--D-H----------------------------NVTGVAFLPNSDFVLSASRDK-------------------TIKM  216 (406)
Q Consensus       187 ~~h--~-~----------------------------~v~~~~~~p~~~~l~s~s~d~-------------------~i~i  216 (406)
                      ...  . .                            ....+++.|..+.++.++.++                   .|..
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A  274 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA  274 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            421  0 0                            012468888888888887766                   3999


Q ss_pred             EEcCCCeEEEEeec--CC-------ccEEEEEECCCCC---EEEEEeCCCeEEEEeCCCccceeEEecCCce-EEE----
Q psy226          217 WEVATGYCVKTLTG--HR-------EWVRQIKVSPDGT---LLASCSNDHTARVWSLATKETKAELRGHDHT-VEC----  279 (406)
Q Consensus       217 wd~~~~~~~~~~~~--~~-------~~v~~l~~~~~~~---~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-v~~----  279 (406)
                      +|..+|+.+..++.  |.       .+.....+..+|+   .++.++.+|.++++|..+++.+........+ ...    
T Consensus       275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~  354 (668)
T 1kv9_A          275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA  354 (668)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred             EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence            99999998877764  32       1222222333565   6889999999999999998876443322100 000    


Q ss_pred             -------------------------------EEeCCCCCcccccc-----------ccCCC-CCCCCC-----CEEE-EE
Q psy226          280 -------------------------------VAWAPGVASESISE-----------AAGRP-PGQGGG-----PYLA-TG  310 (406)
Q Consensus       280 -------------------------------~~~~~~~~~~~~~~-----------~~~~~-~~~~~~-----~~l~-s~  310 (406)
                                                     ++++|......+..           ....+ .....+     ...+ ..
T Consensus       355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~  434 (668)
T 1kv9_A          355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA  434 (668)
T ss_dssp             TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred             cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence                                           11111100000000           00000 000000     0000 12


Q ss_pred             eCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceE-EEEEEeCCCC
Q psy226          311 SRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFV-TSLDFHRAHP  389 (406)
Q Consensus       311 ~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v-~~l~~~~~~~  389 (406)
                      ..+|.|.-||+.+|+.+-....+.. .....+...+..|+.|+.|+.+++||..+++.+..+....... .-+.+..+++
T Consensus       435 ~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~  513 (668)
T 1kv9_A          435 VVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR  513 (668)
T ss_dssp             GCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CccceEEEEeCCCCcEEEEccCCCC-CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCE
Confidence            2458899999999998877654332 2223344567889999999999999999999887775443211 2233444555


Q ss_pred             -EEEEee
Q psy226          390 -YVVTGS  395 (406)
Q Consensus       390 -~l~sgs  395 (406)
                       |++.++
T Consensus       514 ~yva~~~  520 (668)
T 1kv9_A          514 QYVAIMA  520 (668)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence             565554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.07  E-value=1.6e-06  Score=88.60  Aligned_cols=269  Identities=10%  Similarity=0.112  Sum_probs=173.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      |.++...+++.+.+ |..++.|..||..++++..... .+...|.++...++|.+.+ |+.++-+.+||..+.+......
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~  252 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH  252 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence            78888887776655 5555568899988877654321 2345788888888777555 4444348889988765443222


Q ss_pred             c-------CCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeec-------CCccEEEEEECCCCCEEEEEeCC
Q psy226          188 G-------HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG-------HREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       188 ~-------h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                      .       ....|.++...++|.+.+ |+.+ -|.+||..++........       ....|.++..+++|. +..|+.+
T Consensus       253 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~  329 (795)
T 4a2l_A          253 SPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYF  329 (795)
T ss_dssp             CTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESS
T ss_pred             CCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECC
Confidence            1       135689998888777554 4455 588999877754433211       235699999999887 5567777


Q ss_pred             CeEEEEeCCCccceeEEec-------CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE
Q psy226          254 HTARVWSLATKETKAELRG-------HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL  326 (406)
Q Consensus       254 ~~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~  326 (406)
                      +-|..++..+..... +..       ....|.++...+                  .| .|..|+.++-|..||..++..
T Consensus       330 ~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i~~d~------------------~g-~lWiGt~~~Gl~~~~~~~~~~  389 (795)
T 4a2l_A          330 GGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCIVEDK------------------DK-NLWIGTNDGGLNLYNPITQRF  389 (795)
T ss_dssp             SCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEEEECT------------------TS-CEEEEESSSCEEEECTTTCCE
T ss_pred             CCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEEEECC------------------CC-CEEEEECCCCeEEEcCCCCcE
Confidence            888899875543221 111       123455555443                  23 366688887899999887765


Q ss_pred             EEEEeC--------CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec-----cccceEEEEEEeCCCCEEEE
Q psy226          327 LFTLIG--------HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE-----AHSHFVTSLDFHRAHPYVVT  393 (406)
Q Consensus       327 ~~~~~~--------h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~-----~h~~~v~~l~~~~~~~~l~s  393 (406)
                      ......        ....|.++..+++|+.|..|+.++-|.+||..+++.. .+.     .....|.++...+++.+.+.
T Consensus       390 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwig  468 (795)
T 4a2l_A          390 TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLG  468 (795)
T ss_dssp             EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEE
T ss_pred             EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEE
Confidence            432211        2357999999999985666777777999998876532 221     13457999999998886664


Q ss_pred             eeCCCeEEEeec
Q psy226          394 GSVDKTVKVWEC  405 (406)
Q Consensus       394 gs~Dg~v~iw~~  405 (406)
                      . .+| +.+|+.
T Consensus       469 t-~~G-l~~~~~  478 (795)
T 4a2l_A          469 T-LSA-LVRFNP  478 (795)
T ss_dssp             E-SSC-EEEEET
T ss_pred             e-cCc-eeEEeC
Confidence            4 344 666653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.07  E-value=3e-07  Score=80.84  Aligned_cols=219  Identities=16%  Similarity=0.095  Sum_probs=137.9

Q ss_pred             CeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEE
Q psy226          108 PVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSC-SADMSLKLWDMSTYQCLKT  185 (406)
Q Consensus       108 ~V~~v~~~p~~~-~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sg-s~d~~i~vwd~~~~~~~~~  185 (406)
                      .+..++++|++. ++++-..++.|.++|..++.....+.........+++++++..|+.+ ...+.|.++++........
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            467899999755 55555667899999998765444443333567899999976655544 4567899999864332222


Q ss_pred             EecCCcceEEEEEecCCCEEEEEeC---CCcEEEEEcCCCeEEEEe-ecCCccEEEEEECCCCCEE-EEEeCCCeEEEEe
Q psy226          186 MQGHDHNVTGVAFLPNSDFVLSASR---DKTIKMWEVATGYCVKTL-TGHREWVRQIKVSPDGTLL-ASCSNDHTARVWS  260 (406)
Q Consensus       186 ~~~h~~~v~~~~~~p~~~~l~s~s~---d~~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l-~s~~~d~~v~vwd  260 (406)
                      ..........++++|++..|+.+..   .+.|..+++.... ...+ ...-.....++++|++..| ++-...+.|.++|
T Consensus       117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence            2222245689999997666655543   3678888875432 2222 2333467889999987655 5555678999999


Q ss_pred             CCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC-cCEEE
Q psy226          261 LATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD-NWVRG  339 (406)
Q Consensus       261 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~-~~v~~  339 (406)
                      +........+.....+ ..++..                   .+..+++....+.|..+|..+++.+..+.... .....
T Consensus       196 ~~g~~~~~~~~~~~~P-~gi~~d-------------------~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~g  255 (267)
T 1npe_A          196 PAQPGRRKVLEGLQYP-FAVTSY-------------------GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYG  255 (267)
T ss_dssp             TTEEEEEEEEECCCSE-EEEEEE-------------------TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCC
T ss_pred             cCCCceEEEecCCCCc-eEEEEe-------------------CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccce
Confidence            8754332222211111 222221                   23344444456899999999999888775432 24667


Q ss_pred             EEEcCCCC
Q psy226          340 VTFHPGGK  347 (406)
Q Consensus       340 l~~s~~g~  347 (406)
                      +++.|++.
T Consensus       256 i~~~~~~~  263 (267)
T 1npe_A          256 ITIALSQC  263 (267)
T ss_dssp             EEEECSCC
T ss_pred             eeecCccC
Confidence            88888764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.05  E-value=3e-06  Score=86.64  Aligned_cols=271  Identities=12%  Similarity=0.116  Sum_probs=175.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc-------cccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHG-------HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~-------h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ...|.++...+++.+.+. ..++-+..||..+++.......       ....|.++...++|.+.+ |+.+ -+.+||..
T Consensus       214 ~~~i~~i~~d~~g~lwig-t~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~  290 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVA-TEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG  290 (795)
T ss_dssp             CCCEEEEEEEETTEEEEE-EBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred             CCeeEEEEEcCCCCEEEE-ECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence            456888888887776554 4444588999888776544322       135699999998887655 4445 58899988


Q ss_pred             CCeEEEEEec-------CCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeec-------CCccEEEEEECCCC
Q psy226          179 TYQCLKTMQG-------HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG-------HREWVRQIKVSPDG  244 (406)
Q Consensus       179 ~~~~~~~~~~-------h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~~~~~  244 (406)
                      +++.......       ....|.++...++|. |..|+.++-|..|+..++... .+..       ....|.++..+++|
T Consensus       291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g  368 (795)
T 4a2l_A          291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDK  368 (795)
T ss_dssp             TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTS
T ss_pred             CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCC
Confidence            7664432211       235689998888776 556777778899987655322 2211       23468999999888


Q ss_pred             CEEEEEeCCCeEEEEeCCCccceeEEec--------CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcE
Q psy226          245 TLLASCSNDHTARVWSLATKETKAELRG--------HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTI  316 (406)
Q Consensus       245 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  316 (406)
                      . |..|+.++-|..||..+.........        ....|.++...+                  .+..|..|+.++-|
T Consensus       369 ~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~------------------~g~~lWigt~~~Gl  429 (795)
T 4a2l_A          369 N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE------------------KKSLVYIGTHAGGL  429 (795)
T ss_dssp             C-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET------------------TTTEEEEEETTTEE
T ss_pred             C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC------------------CCCEEEEEeCcCce
Confidence            7 55577887899999876543221111        123455555433                  34436677887789


Q ss_pred             EEEECCCCeEEEEEe----CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec------cccceEEEEEEeC
Q psy226          317 KLWDVGSGSLLFTLI----GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE------AHSHFVTSLDFHR  386 (406)
Q Consensus       317 ~lwd~~~~~~~~~~~----~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~------~h~~~v~~l~~~~  386 (406)
                      ..||..+++......    .+...|.++...++|...+... + -+.+||..+++......      .....|.++...+
T Consensus       430 ~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~  507 (795)
T 4a2l_A          430 SILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS  507 (795)
T ss_dssp             EEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT
T ss_pred             eEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEECC
Confidence            999998876543321    1345799999999888766544 4 48889987654322111      1235799999999


Q ss_pred             CCCEEEEeeCCCeEEEee
Q psy226          387 AHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       387 ~~~~l~sgs~Dg~v~iw~  404 (406)
                      ++.+.+... +| +..|+
T Consensus       508 ~g~lWigt~-~G-l~~~~  523 (795)
T 4a2l_A          508 HKRLWIGGE-EG-LSVFK  523 (795)
T ss_dssp             TCCEEEEES-SC-EEEEE
T ss_pred             CCCEEEEeC-Cc-eEEEe
Confidence            998766544 44 66665

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.05  E-value=4e-07  Score=82.48  Aligned_cols=241  Identities=9%  Similarity=0.030  Sum_probs=147.9

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-------------------ccccCeeeEEECC-CC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-------------------GHLDSVQDIAFDQ-SG  160 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-------------------~h~~~V~~l~~~~-~g  160 (406)
                      .+.+.-....++++.|+++++.++..++.|..||..+++......                   .....+.++++.+ +|
T Consensus        13 ~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g   92 (322)
T 2fp8_A           13 LIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN   92 (322)
T ss_dssp             EEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred             ecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence            344433345678899999988889899999999988765543211                   0113578899997 55


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEEec-----CCcceEEEEEec-CCCEEEEEeC-----------------CCcEEEE
Q psy226          161 KLLVSCSADMSLKLWDMSTYQCLKTMQG-----HDHNVTGVAFLP-NSDFVLSASR-----------------DKTIKMW  217 (406)
Q Consensus       161 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~p-~~~~l~s~s~-----------------d~~i~iw  217 (406)
                      + |+.+...+.|..+|..++.. ..+..     .......+++.| +|++.++-..                 ++.|..+
T Consensus        93 ~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~  170 (322)
T 2fp8_A           93 Q-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY  170 (322)
T ss_dssp             E-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred             c-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence            5 55555555588888776532 22211     112467899999 8887666432                 3678888


Q ss_pred             EcCCCeEEEEeecCCccEEEEEECCCCCEEEEE-eCCCeEEEEeCCCccc--eeEEecCCceEEEEEeCCCCCccccccc
Q psy226          218 EVATGYCVKTLTGHREWVRQIKVSPDGTLLASC-SNDHTARVWSLATKET--KAELRGHDHTVECVAWAPGVASESISEA  294 (406)
Q Consensus       218 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~  294 (406)
                      |..++....... .-.....++++|+|+.++.+ ...+.|.+|++.....  ...+..... ...++..+          
T Consensus       171 d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~----------  238 (322)
T 2fp8_A          171 DPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA----------  238 (322)
T ss_dssp             ETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT----------
T ss_pred             eCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC----------
Confidence            887765433222 22335679999999866544 5678999999875321  111111111 34444443          


Q ss_pred             cCCCCCCCCCCEEEEEeC----------CCcEEEEECCCCeEEEEEeCC----CcCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy226          295 AGRPPGQGGGPYLATGSR----------DKTIKLWDVGSGSLLFTLIGH----DNWVRGVTFHPGGKYLVSCGDDKTLRV  360 (406)
Q Consensus       295 ~~~~~~~~~~~~l~s~~~----------d~~i~lwd~~~~~~~~~~~~h----~~~v~~l~~s~~g~~l~sgs~d~~i~v  360 (406)
                              +|.+.++...          .+.|..+|. .++.+..+...    ...++++++ .+++.+++...++.|.+
T Consensus       239 --------~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~  308 (322)
T 2fp8_A          239 --------DGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGI  308 (322)
T ss_dssp             --------TSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEE
T ss_pred             --------CCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEE
Confidence                    3555555433          456888886 46766666543    245677776 46666666667888999


Q ss_pred             EeCCC
Q psy226          361 WDTAN  365 (406)
Q Consensus       361 wd~~~  365 (406)
                      +++..
T Consensus       309 ~~~~~  313 (322)
T 2fp8_A          309 LVYDK  313 (322)
T ss_dssp             EEC--
T ss_pred             Eeccc
Confidence            98753

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.04  E-value=2.1e-08  Score=96.18  Aligned_cols=231  Identities=11%  Similarity=0.077  Sum_probs=155.3

Q ss_pred             CCCCEEEEEeC-CCcEEEEEcCCCcEEEEeccc-ccCeeeEEE-C-CCCCEEEEEe------------------CCCcEE
Q psy226          116 PVFSLMASCSE-DATIRLWDYETGEYERALHGH-LDSVQDIAF-D-QSGKLLVSCS------------------ADMSLK  173 (406)
Q Consensus       116 p~~~~latgs~-dg~v~vwd~~~~~~~~~~~~h-~~~V~~l~~-~-~~g~~l~sgs------------------~d~~i~  173 (406)
                      |||+++..+.. ++.|.+-|+.+.+..+.+.-- ......+++ + |+++++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            47777776555 557999999999987755322 245778888 5 8999998884                  346799


Q ss_pred             EEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCC--------------------------------------cEE
Q psy226          174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK--------------------------------------TIK  215 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~--------------------------------------~i~  215 (406)
                      +.|..+.+....+.--. .-..++++|+|+++++.+.+.                                      .|.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99999988877765322 446678999999988887553                                      356


Q ss_pred             EEEcCC--CeE-EEEeecCCccEEEEEECCCCCEEEEEe-CCCeEEEEeCCCccc------------eeEEecCCceEEE
Q psy226          216 MWEVAT--GYC-VKTLTGHREWVRQIKVSPDGTLLASCS-NDHTARVWSLATKET------------KAELRGHDHTVEC  279 (406)
Q Consensus       216 iwd~~~--~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~~------------~~~~~~~~~~v~~  279 (406)
                      +.|.++  +.. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+.            ..... -.....-
T Consensus       258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h  335 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLH  335 (595)
T ss_dssp             EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEE
T ss_pred             EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcce
Confidence            666665  333 333322 12345789999999876655 689999999986421            11111 1233456


Q ss_pred             EEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC----------CeEEEEEeCCCcCE-----EEEEEcC
Q psy226          280 VAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS----------GSLLFTLIGHDNWV-----RGVTFHP  344 (406)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~----------~~~~~~~~~h~~~v-----~~l~~s~  344 (406)
                      ++|+|                  +|...++...|++|.+||+.+          .+.+..+.-|-.+-     .++.++|
T Consensus       336 ~aF~~------------------dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~  397 (595)
T 1fwx_A          336 TAFDG------------------RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA  397 (595)
T ss_dssp             EEECT------------------TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred             EEECC------------------CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC
Confidence            67776                  354455667799999999876          55666766554321     2235689


Q ss_pred             CCCEEEEEe---CCCeE----------EEEeCCCCc
Q psy226          345 GGKYLVSCG---DDKTL----------RVWDTANKR  367 (406)
Q Consensus       345 ~g~~l~sgs---~d~~i----------~vwd~~~~~  367 (406)
                      ||++|++..   .|+.+          .++|+..++
T Consensus       398 DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          398 TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            999999864   35431          788985544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.04  E-value=9.3e-08  Score=83.34  Aligned_cols=193  Identities=10%  Similarity=0.043  Sum_probs=136.2

Q ss_pred             eEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCcEEEEeccc-ccCeeeEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEE
Q psy226          109 VIKVIFHPVFSLMASCSE--DATIRLWDYETGEYERALHGH-LDSVQDIAFDQSGKLLVSC-SADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~--dg~v~vwd~~~~~~~~~~~~h-~~~V~~l~~~~~g~~l~sg-s~d~~i~vwd~~~~~~~~  184 (406)
                      ...++|+|++.++++.+.  ++.|++.|..+++....+.-. ......+++.  |+.|..+ -.++.+.++|..+++.+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence            578999998766666553  689999999999988876521 1223345554  4455544 467899999999999888


Q ss_pred             EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCC-----ccEEEEEECCCCCEEEEEeCCCeEEEE
Q psy226          185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR-----EWVRQIKVSPDGTLLASCSNDHTARVW  259 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l~s~~~d~~v~vw  259 (406)
                      ++..-...  ...+.++++.++++..++.|.++|..+.+.+..+.-..     ...+.+.+. +|..++....++.|.+.
T Consensus       101 ~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI  177 (266)
T 2iwa_A          101 NFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI  177 (266)
T ss_dssp             EEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence            87532111  23356688877777778899999999988777765321     135677777 77666666678999999


Q ss_pred             eCCCccceeEEecC-------------CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC
Q psy226          260 SLATKETKAELRGH-------------DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS  323 (406)
Q Consensus       260 d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~  323 (406)
                      |..+++.+..+...             ......++|.|+                 ...+++++...+.|...++..
T Consensus       178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~-----------------~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE-----------------NKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT-----------------TTEEEEEETTCSEEEEEEEEE
T ss_pred             ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC-----------------CCEEEEECCCCCeEEEEEEec
Confidence            99998877766531             124578888874                 345677777788887777643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.02  E-value=1.6e-07  Score=81.83  Aligned_cols=201  Identities=9%  Similarity=0.060  Sum_probs=134.2

Q ss_pred             eEEEEEecCCc--ceEEEEEecCCCEEEEEeC--CCcEEEEEcCCCeEEEEeecC-CccEEEEEECCCCCEEEEEeCCCe
Q psy226          181 QCLKTMQGHDH--NVTGVAFLPNSDFVLSASR--DKTIKMWEVATGYCVKTLTGH-REWVRQIKVSPDGTLLASCSNDHT  255 (406)
Q Consensus       181 ~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~d~~  255 (406)
                      +.+.++. |..  ...++.|+|++.+.++.+.  ++.|.+.|..+++.+..+.-. ......+++.. +.+.++.-.++.
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~   87 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSE
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCE
Confidence            4455553 443  3579999998644444433  579999999999988886532 22334555542 344455557899


Q ss_pred             EEEEeCCCccceeEEecC-CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy226          256 ARVWSLATKETKAELRGH-DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD  334 (406)
Q Consensus       256 v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~  334 (406)
                      +.++|..+.+.+..+... ... ..+++                    ++..++++..++.|.++|..+.+.+..+.-..
T Consensus        88 v~viD~~t~~v~~~i~~g~~~g-~glt~--------------------Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~  146 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQMKDG-WGLAT--------------------DGKILYGSDGTSILYEIDPHTFKLIKKHNVKY  146 (266)
T ss_dssp             EEEEETTTTEEEEEEECCSSSC-CEEEE--------------------CSSSEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred             EEEEECCCCcEEEEEECCCCCe-EEEEE--------------------CCCEEEEECCCCeEEEEECCCCcEEEEEEECC
Confidence            999999988777665422 111 11211                    23445555578899999999988877765211


Q ss_pred             -----cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecccc-------------ceEEEEEEeCCCC-EEEEee
Q psy226          335 -----NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS-------------HFVTSLDFHRAHP-YVVTGS  395 (406)
Q Consensus       335 -----~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~-------------~~v~~l~~~~~~~-~l~sgs  395 (406)
                           ..+..+.|. +|+..+....++.|.+.|..+++.+..+....             ...+.++|+|+++ +++++.
T Consensus       147 ~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk  225 (266)
T 2iwa_A          147 NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK  225 (266)
T ss_dssp             TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred             CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence                 136778888 67655566568899999999999888875321             3568999999986 556777


Q ss_pred             CCCeEEEeec
Q psy226          396 VDKTVKVWEC  405 (406)
Q Consensus       396 ~Dg~v~iw~~  405 (406)
                      ..+.|..-++
T Consensus       226 ~~~~v~~i~l  235 (266)
T 2iwa_A          226 LWPKLFEIKL  235 (266)
T ss_dssp             TCSEEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            7777776554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.97  E-value=4.4e-07  Score=88.96  Aligned_cols=277  Identities=14%  Similarity=0.069  Sum_probs=166.1

Q ss_pred             CCEEEEEeC-CCcEEEEEc-CCCcEEEEecccccC-----------eeeEEECCCCCE----EEEEeCCCcEEEEeCCCC
Q psy226          118 FSLMASCSE-DATIRLWDY-ETGEYERALHGHLDS-----------VQDIAFDQSGKL----LVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       118 ~~~latgs~-dg~v~vwd~-~~~~~~~~~~~h~~~-----------V~~l~~~~~g~~----l~sgs~d~~i~vwd~~~~  180 (406)
                      +..|+.++. ++.|.-+|. .+|+.+-........           ...++++|.+..    ++.++.|+.+.-+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            456666777 899999999 899987665432210           123555433334    888899999999999999


Q ss_pred             eEEEEEecCCc----ceEE-EEEecCCCEEEEEe------CCCcEEEEEcCCCeEEEEeecCCccE--------------
Q psy226          181 QCLKTMQGHDH----NVTG-VAFLPNSDFVLSAS------RDKTIKMWEVATGYCVKTLTGHREWV--------------  235 (406)
Q Consensus       181 ~~~~~~~~h~~----~v~~-~~~~p~~~~l~s~s------~d~~i~iwd~~~~~~~~~~~~~~~~v--------------  235 (406)
                      +.+........    .+.+ ... .+ ..+++++      .++.|+-+|..+|+.+..+.......              
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v-~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYV-VK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEE-ET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEE-EC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            98766543221    1221 111 13 4555555      38999999999999887765332110              


Q ss_pred             ------------------------EEEEECCCCCEEEEEeCC----------------CeEEEEeCCCccceeEEecCCc
Q psy226          236 ------------------------RQIKVSPDGTLLASCSND----------------HTARVWSLATKETKAELRGHDH  275 (406)
Q Consensus       236 ------------------------~~l~~~~~~~~l~s~~~d----------------~~v~vwd~~~~~~~~~~~~~~~  275 (406)
                                              ..++++++..+++.++.+                +.|..+|..+++.+-.++...+
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                    134566777777777655                3788899988877655443211


Q ss_pred             eEEEEEeCCCCC-ccccccccCCCCCCCCC---CEEEEEeCCCcEEEEECCCCeEEEEEeCCC-------------cCE-
Q psy226          276 TVECVAWAPGVA-SESISEAAGRPPGQGGG---PYLATGSRDKTIKLWDVGSGSLLFTLIGHD-------------NWV-  337 (406)
Q Consensus       276 ~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~-------------~~v-  337 (406)
                      ..    |.-+.. ...+....     ..+|   ..++.++.+|.+.++|..+|+.+....-..             .++ 
T Consensus       300 d~----wd~d~~~~p~l~d~~-----~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~  370 (599)
T 1w6s_A          300 DE----WDYAGVNVMMLSEQK-----DKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVR  370 (599)
T ss_dssp             CS----SCCCCCCCCEEEEEE-----CTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEE
T ss_pred             cc----ccccCCCccEEEecc-----ccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceee
Confidence            00    000000 00000000     0124   467788999999999999999887654211             011 


Q ss_pred             -------------------------EEEEEcCCCCEEEEEe---------------------------------------
Q psy226          338 -------------------------RGVTFHPGGKYLVSCG---------------------------------------  353 (406)
Q Consensus       338 -------------------------~~l~~s~~g~~l~sgs---------------------------------------  353 (406)
                                               ..++++|+...+++..                                       
T Consensus       371 ~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~  450 (599)
T 1w6s_A          371 DPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYE  450 (599)
T ss_dssp             CGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTB
T ss_pred             ccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCC
Confidence                                     1356777766655431                                       


Q ss_pred             CCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          354 DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       354 ~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      .+|.|..||..+++.+-+.... ..+..-.....+.++..|+.||.++.||.+
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~  502 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSD  502 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECC
Confidence            3478888998888765444211 111111122345677779999999999853

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.96  E-value=6.2e-07  Score=87.81  Aligned_cols=274  Identities=16%  Similarity=0.100  Sum_probs=166.5

Q ss_pred             CCEEEEEeC-CCcEEEEEc-CCCcEEEEeccccc-C---------e-eeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy226          118 FSLMASCSE-DATIRLWDY-ETGEYERALHGHLD-S---------V-QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       118 ~~~latgs~-dg~v~vwd~-~~~~~~~~~~~h~~-~---------V-~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      +..++.++. ++.|.-+|. .+|+.+-....... .         + ..+++  .+..++.++.|+.+..+|..+++.+.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            456666676 899999999 89998766542211 0         0 12233  35678888899999999999998876


Q ss_pred             EEecCCc----ceEE-EEEecCCCEEEEEeC------CCcEEEEEcCCCeEEEEeecCCcc-------------------
Q psy226          185 TMQGHDH----NVTG-VAFLPNSDFVLSASR------DKTIKMWEVATGYCVKTLTGHREW-------------------  234 (406)
Q Consensus       185 ~~~~h~~----~v~~-~~~~p~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~~~~-------------------  234 (406)
                      .......    .+.+ ...  .+..++.++.      ++.|..+|..+|+.+..+......                   
T Consensus       140 ~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            6543221    1211 111  2345666654      799999999999988776532211                   


Q ss_pred             -------------------EEEEEECCCCCEEEEEeCC----------------CeEEEEeCCCccceeEEecCCceEEE
Q psy226          235 -------------------VRQIKVSPDGTLLASCSND----------------HTARVWSLATKETKAELRGHDHTVEC  279 (406)
Q Consensus       235 -------------------v~~l~~~~~~~~l~s~~~d----------------~~v~vwd~~~~~~~~~~~~~~~~v~~  279 (406)
                                         ...++++++...+..++.+                +.|..+|..+++.+-.++...+..  
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~--  295 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE--  295 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS--
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcc--
Confidence                               0135566766666665532                358889988887665443211000  


Q ss_pred             EEeCCCC-CccccccccCCCCCCCCC---CEEEEEeCCCcEEEEECCCCeEEEEEeCCC--c-----------CE-----
Q psy226          280 VAWAPGV-ASESISEAAGRPPGQGGG---PYLATGSRDKTIKLWDVGSGSLLFTLIGHD--N-----------WV-----  337 (406)
Q Consensus       280 ~~~~~~~-~~~~~~~~~~~~~~~~~~---~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~--~-----------~v-----  337 (406)
                        |.-+. ....+..      ...+|   ..++.++.+|.+.++|..+|+.+..+.-..  .           ++     
T Consensus       296 --~d~~~~~~p~l~~------~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~  367 (571)
T 2ad6_A          296 --WDFAGVNQMVLTD------QPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEF  367 (571)
T ss_dssp             --SCCCCCCCCEEEE------EEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGG
T ss_pred             --cccccCCCCEEEe------cccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceeccccc
Confidence              00000 0000000      00023   357778899999999999999887654211  1           11     


Q ss_pred             ---------------------EEEEEcCCCCEEEEEe-------------------------------------CCCeEE
Q psy226          338 ---------------------RGVTFHPGGKYLVSCG-------------------------------------DDKTLR  359 (406)
Q Consensus       338 ---------------------~~l~~s~~g~~l~sgs-------------------------------------~d~~i~  359 (406)
                                           ..++++|+...|+..+                                     .+|.|.
T Consensus       368 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~  447 (571)
T 2ad6_A          368 ATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIR  447 (571)
T ss_dssp             CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEE
T ss_pred             CCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEE
Confidence                                 2357888877776653                                     357899


Q ss_pred             EEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       360 vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      .||..+++.+-++... ..+....+...+..+..++.||.|..||.+
T Consensus       448 a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~  493 (571)
T 2ad6_A          448 AFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             EECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred             EEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence            9999998876555422 122222233345677779999999999863

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.95  E-value=1.1e-06  Score=79.65  Aligned_cols=232  Identities=10%  Similarity=0.092  Sum_probs=145.0

Q ss_pred             cCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec--------------------CCcceEEEEEecCCCEEEEE
Q psy226          149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQG--------------------HDHNVTGVAFLPNSDFVLSA  208 (406)
Q Consensus       149 ~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~--------------------h~~~v~~~~~~p~~~~l~s~  208 (406)
                      ....+++++++|+++.++..++.|..||..+++.. .+..                    ......++++.+++..|+.+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~   97 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV   97 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence            45678999999987888888999999998765432 2221                    01247889999843455555


Q ss_pred             eCCCcEEEEEcCCCeEEEEeec-----CCccEEEEEECC-CCCEEEEEeC-----------------CCeEEEEeCCCcc
Q psy226          209 SRDKTIKMWEVATGYCVKTLTG-----HREWVRQIKVSP-DGTLLASCSN-----------------DHTARVWSLATKE  265 (406)
Q Consensus       209 s~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~l~~~~-~~~~l~s~~~-----------------d~~v~vwd~~~~~  265 (406)
                      ...+.|..+|..++.. ..+..     .......+++++ +|++.++-..                 ++.|..+|..++.
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            5556688888765532 22211     113467899999 9987776532                 3678888876544


Q ss_pred             ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEE-eCCCcEEEEECCCC---eEEEEEeCCCcCEEEEE
Q psy226          266 TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATG-SRDKTIKLWDVGSG---SLLFTLIGHDNWVRGVT  341 (406)
Q Consensus       266 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~lwd~~~~---~~~~~~~~h~~~v~~l~  341 (406)
                      ....... ......++++|                  ++.+|+.+ +..+.|..|++...   .. ..+..... ...++
T Consensus       177 ~~~~~~~-~~~p~gia~~~------------------dg~~lyv~d~~~~~I~~~~~~~~~~~~~-~~~~~~~g-P~gi~  235 (322)
T 2fp8_A          177 TTLLLKE-LHVPGGAEVSA------------------DSSFVLVAEFLSHQIVKYWLEGPKKGTA-EVLVKIPN-PGNIK  235 (322)
T ss_dssp             EEEEEEE-ESCCCEEEECT------------------TSSEEEEEEGGGTEEEEEESSSTTTTCE-EEEEECSS-EEEEE
T ss_pred             EEEeccC-CccCcceEECC------------------CCCEEEEEeCCCCeEEEEECCCCcCCcc-ceEEeCCC-CCCeE
Confidence            3221111 11223456655                  35545444 55688999998642   21 11111223 78899


Q ss_pred             EcCCCCEEEEEeC----------CCeEEEEeCCCCccceeeccc----cceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          342 FHPGGKYLVSCGD----------DKTLRVWDTANKRNMKTLEAH----SHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       342 ~s~~g~~l~sgs~----------d~~i~vwd~~~~~~~~~l~~h----~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      ++++|++.++...          .+.|..+|.. ++.+..+...    -..++++++ .++.+.++....+.|..+++
T Consensus       236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred             ECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence            9999987776654          4678888864 6666655432    234666766 36666677667888888875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.94  E-value=4.5e-07  Score=78.12  Aligned_cols=180  Identities=12%  Similarity=0.144  Sum_probs=123.2

Q ss_pred             eeeEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEE-eCCCcEEEEEcCCCeEEEE
Q psy226          151 VQDIAFDQSGKLLVSCSADM--SLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSA-SRDKTIKMWEVATGYCVKT  227 (406)
Q Consensus       151 V~~l~~~~~g~~l~sgs~d~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-s~d~~i~iwd~~~~~~~~~  227 (406)
                      ...|.|+ ++.+..+.+.+|  .|+++|+.+++.+..+.... .....-..++++.|... -.++.+.++|..+.+.+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            5788998 666667777766  89999999999988876543 33333233345555544 4588999999999999988


Q ss_pred             eecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecC--Cce---EEEEEeCCCCCccccccccCCCCCCC
Q psy226          228 LTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH--DHT---VECVAWAPGVASESISEAAGRPPGQG  302 (406)
Q Consensus       228 ~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~  302 (406)
                      +.-...   ...+++++..|+....++.|.++|..+.+....+...  ..+   +..+.|.                   
T Consensus       123 i~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-------------------  180 (262)
T 3nol_A          123 FNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-------------------  180 (262)
T ss_dssp             EECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-------------------
T ss_pred             EECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-------------------
Confidence            874332   1233356776666666888999999887766554431  112   2223332                   


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEEeCC------------CcCEEEEEEcCCCCEEEEEeC
Q psy226          303 GGPYLATGSRDKTIKLWDVGSGSLLFTLIGH------------DNWVRGVTFHPGGKYLVSCGD  354 (406)
Q Consensus       303 ~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h------------~~~v~~l~~s~~g~~l~sgs~  354 (406)
                      +|...+..-.++.|.+.|..+|+.+..+.-.            .+-.+.|+|+|+++.|+..+.
T Consensus       181 ~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          181 DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            2445555556889999999999998876532            134689999999888777764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.93  E-value=3.1e-06  Score=77.51  Aligned_cols=247  Identities=11%  Similarity=0.007  Sum_probs=151.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEE
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSC-SADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sg-s~d~~i~vwd~~~~~~~~  184 (406)
                      .+..+|.+..++..++++  ....|+..+.........+.+ ...+..++|++.+..|+.. ...+.|..+++.......
T Consensus        33 ~d~~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~  109 (349)
T 3v64_C           33 PDRRSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE  109 (349)
T ss_dssp             TTSSCEEESSSCCEEEEE--CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CCCCcccccccCceeEee--cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence            344567777774434433  335688888877766555543 3457899999766655544 456889999987654333


Q ss_pred             EEecCCcceEEEEEecCCCEE-EEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCC-EEEEEeCC-CeEEEEeC
Q psy226          185 TMQGHDHNVTGVAFLPNSDFV-LSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT-LLASCSND-HTARVWSL  261 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~d-~~v~vwd~  261 (406)
                      .+........++++.+.+..| ++-...+.|.+.++........+...-.....++++|.+. ++++-... +.|..+++
T Consensus       110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~  189 (349)
T 3v64_C          110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  189 (349)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence            333223445789998865554 4555567899999865443333334445678899998555 44554455 78888887


Q ss_pred             CCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEE
Q psy226          262 ATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT  341 (406)
Q Consensus       262 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~  341 (406)
                      ..................+++.|.                 .+.+.++-+..+.|..+|+........+........+++
T Consensus       190 dG~~~~~~~~~~~~~PnGla~d~~-----------------~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gia  252 (349)
T 3v64_C          190 DGSGRRIIADTHLFWPNGLTIDYA-----------------GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT  252 (349)
T ss_dssp             TSCSCEESCCSSCSCEEEEEEETT-----------------TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEE
T ss_pred             CCCCcEEEEECCCCCcceEEEeCC-----------------CCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEE
Confidence            654332222222334567777763                 244445555567899999864332222333345677888


Q ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCccceeec
Q psy226          342 FHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE  373 (406)
Q Consensus       342 ~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~  373 (406)
                      +. .+..+++-...+.|..+|..+++....+.
T Consensus       253 v~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          253 VF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            83 45555666677889999876776665554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.92  E-value=3.4e-07  Score=89.64  Aligned_cols=267  Identities=12%  Similarity=0.071  Sum_probs=155.0

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecc--ccc--Ceee-EEECCCCCEEEEEeC------CCcEEEEeCCCCeEEEEE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHG--HLD--SVQD-IAFDQSGKLLVSCSA------DMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~--h~~--~V~~-l~~~~~g~~l~sgs~------d~~i~vwd~~~~~~~~~~  186 (406)
                      +..++.++.|+.|..+|..+|+.......  +..  .+.+ .... + ..++.++.      ++.|..+|..+++.+..+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            45778888899999999999988765442  111  2221 1111 3 45555554      789999999999988766


Q ss_pred             ecCCcc-------------------------------------e-EEEEEecCCCEEEEEeCC----------------C
Q psy226          187 QGHDHN-------------------------------------V-TGVAFLPNSDFVLSASRD----------------K  212 (406)
Q Consensus       187 ~~h~~~-------------------------------------v-~~~~~~p~~~~l~s~s~d----------------~  212 (406)
                      ......                                     + ..+++.+....++.++.+                +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            532211                                     0 135677777777766532                3


Q ss_pred             cEEEEEcCCCeEEEEeec--CC--------ccEEEEEECCCCC---EEEEEeCCCeEEEEeCCCccceeEEecCC-----
Q psy226          213 TIKMWEVATGYCVKTLTG--HR--------EWVRQIKVSPDGT---LLASCSNDHTARVWSLATKETKAELRGHD-----  274 (406)
Q Consensus       213 ~i~iwd~~~~~~~~~~~~--~~--------~~v~~l~~~~~~~---~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-----  274 (406)
                      .|..+|..+|+.+..++.  |.        .++. +...++|+   .++.++.+|.+.++|..+++.+.......     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            599999999998877653  21        1121 22224674   57788899999999999887765543221     


Q ss_pred             --------ceEE-----------EEEeCCCCCccccccccCCCCCCCCCCEEEEE-------------------------
Q psy226          275 --------HTVE-----------CVAWAPGVASESISEAAGRPPGQGGGPYLATG-------------------------  310 (406)
Q Consensus       275 --------~~v~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-------------------------  310 (406)
                              .++.           .....|.......   ......++....+++.                         
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~---w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~  428 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHN---QGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT  428 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSC---SCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccC---CCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence                    1111           0001111000000   0000000011222222                         


Q ss_pred             ------------eCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccce
Q psy226          311 ------------SRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF  378 (406)
Q Consensus       311 ------------~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~  378 (406)
                                  ..++.|..||+.+++.+-++.... .+.+..+...+..++.++.|+.|+.||..+++.+-++......
T Consensus       429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~  507 (571)
T 2ad6_A          429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG  507 (571)
T ss_dssp             EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             ceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCc
Confidence                        135789999999999887765322 1222222234667788999999999999999988777543221


Q ss_pred             -EEEEEEeCCCCEE
Q psy226          379 -VTSLDFHRAHPYV  391 (406)
Q Consensus       379 -v~~l~~~~~~~~l  391 (406)
                       -.-+.+..+++.+
T Consensus       508 ~~~p~~~~~~G~~y  521 (571)
T 2ad6_A          508 IGSPMTYSFKGKQY  521 (571)
T ss_dssp             CSCCEEEEETTEEE
T ss_pred             EeeeEEEEECCEEE
Confidence             1123355666543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.90  E-value=3.3e-06  Score=75.80  Aligned_cols=223  Identities=11%  Similarity=0.042  Sum_probs=133.4

Q ss_pred             cCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCC--cEEEEEcCCCeEEE
Q psy226          149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK--TIKMWEVATGYCVK  226 (406)
Q Consensus       149 ~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~--~i~iwd~~~~~~~~  226 (406)
                      ....+++|+++|+++++-..++.|..||..+. ....+. ......++++.++++++++.....  .|..+|..++....
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            34668999999987777667889999998753 333332 234688999999999666544332  46667777776543


Q ss_pred             Eee-cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc-eeEEec---------CCceEEEEEeCCCCCcccccccc
Q psy226          227 TLT-GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET-KAELRG---------HDHTVECVAWAPGVASESISEAA  295 (406)
Q Consensus       227 ~~~-~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~  295 (406)
                      ... ........++..+++..+++-..++.|.++|..+... +.....         .......+  +|           
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-----------  176 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-----------  176 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-----------
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-----------
Confidence            322 1223345566666665556555688888888764321 110000         00001111  11           


Q ss_pred             CCCCCCCCCC-EEEEEeCCCcEEEEECCC-CeE--EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--c
Q psy226          296 GRPPGQGGGP-YLATGSRDKTIKLWDVGS-GSL--LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN--M  369 (406)
Q Consensus       296 ~~~~~~~~~~-~l~s~~~d~~i~lwd~~~-~~~--~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~--~  369 (406)
                             ++. +.++-...+.|..||+.. +..  ...+.. ......++++++|++.++....+.|.++|.. ++.  +
T Consensus       177 -------dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~  247 (306)
T 2p4o_A          177 -------FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTII  247 (306)
T ss_dssp             -------ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred             -------CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence                   233 445555677899999864 321  111111 1235678999999988877778899999975 544  2


Q ss_pred             eeeccccceEEEEEEe---CCCCEEEEee
Q psy226          370 KTLEAHSHFVTSLDFH---RAHPYVVTGS  395 (406)
Q Consensus       370 ~~l~~h~~~v~~l~~~---~~~~~l~sgs  395 (406)
                      ..+.......++++|.   |++..|...+
T Consensus       248 ~~~~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          248 AQAEQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             ECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             eecccccCCceEEEEecccCCCCEEEEEC
Confidence            2333333458899998   8877665544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.89  E-value=8.8e-08  Score=95.72  Aligned_cols=269  Identities=11%  Similarity=0.030  Sum_probs=150.8

Q ss_pred             EEEEcC-CCCEEEEEeCCC-----------cEEEEEcCCCcEEE--Eec-ccccCeeeEEECCCCCEEEEEeC-CCcEEE
Q psy226          111 KVIFHP-VFSLMASCSEDA-----------TIRLWDYETGEYER--ALH-GHLDSVQDIAFDQSGKLLVSCSA-DMSLKL  174 (406)
Q Consensus       111 ~v~~~p-~~~~latgs~dg-----------~v~vwd~~~~~~~~--~~~-~h~~~V~~l~~~~~g~~l~sgs~-d~~i~v  174 (406)
                      .+++.| ++.+++.|+.++           .+.+||..+++...  .+. .+.....++++..+|++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456667 888999887653           58899998876432  222 22333445778889999999884 468999


Q ss_pred             EeCCCCeEEEEEecCCc-ceEEEEEecCCCEEEEEe-CC-----CcEEEEEcCCCeEEEEe----ecCCccEEEEEECCC
Q psy226          175 WDMSTYQCLKTMQGHDH-NVTGVAFLPNSDFVLSAS-RD-----KTIKMWEVATGYCVKTL----TGHREWVRQIKVSPD  243 (406)
Q Consensus       175 wd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s-~d-----~~i~iwd~~~~~~~~~~----~~~~~~v~~l~~~~~  243 (406)
                      ||..+.+....-..+.. .-.+++..++++.++.|+ .+     ..+.+||..+..-...-    ......-....+..+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~  349 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD  349 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence            99887654322111111 123456667899888888 44     56899999876543320    000000000112345


Q ss_pred             CCEEEEEeCCC---------eEEEEeCCCccceeEEecCCc---------eEEEEEeCCCCCccccccccCCCCCCCCCC
Q psy226          244 GTLLASCSNDH---------TARVWSLATKETKAELRGHDH---------TVECVAWAPGVASESISEAAGRPPGQGGGP  305 (406)
Q Consensus       244 ~~~l~s~~~d~---------~v~vwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (406)
                      +..++.|+.+|         .+..||..+..-......+..         .-.++.+..                 .++.
T Consensus       350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~-----------------~~~~  412 (656)
T 1k3i_A          350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDA-----------------VKGK  412 (656)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEET-----------------TTTE
T ss_pred             CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccC-----------------CCCe
Confidence            55556665554         456777765432221111100         001111110                 1456


Q ss_pred             EEEEEeCCC-----------cEEEEECCCCeEEEEE--eCCCcC-EEEEEEcCCCCEEEEEeCC-----------CeEEE
Q psy226          306 YLATGSRDK-----------TIKLWDVGSGSLLFTL--IGHDNW-VRGVTFHPGGKYLVSCGDD-----------KTLRV  360 (406)
Q Consensus       306 ~l~s~~~d~-----------~i~lwd~~~~~~~~~~--~~h~~~-v~~l~~s~~g~~l~sgs~d-----------~~i~v  360 (406)
                      +++.|+.++           .|.+||..+..-....  .-+... -.+.+..|+|+.++.|+.+           ..+.+
T Consensus       413 i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~  492 (656)
T 1k3i_A          413 ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEI  492 (656)
T ss_dssp             EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEE
T ss_pred             EEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEE
Confidence            777777532           6778888776543322  112222 2344566899999998854           46889


Q ss_pred             EeCCCCcc--ceeeccccceEEEEEEeCCCCEEEEeeC
Q psy226          361 WDTANKRN--MKTLEAHSHFVTSLDFHRAHPYVVTGSV  396 (406)
Q Consensus       361 wd~~~~~~--~~~l~~h~~~v~~l~~~~~~~~l~sgs~  396 (406)
                      ||..+.+-  +..+......-.+..+.|++++++.||.
T Consensus       493 ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          493 YVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            99876542  2212111111123446789999999985

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.88  E-value=4.9e-06  Score=81.57  Aligned_cols=277  Identities=13%  Similarity=0.097  Sum_probs=162.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccccC---------eeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHLDS---------VQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQG  188 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~---------V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~  188 (406)
                      +..++.++.++.|.-+|..+|+.+-.+......         -..+++  .+..++.++.|+.+.-+|..+++.+.....
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~  145 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence            345555555445999999999987666533221         012233  356788889999999999999998776654


Q ss_pred             CCc----ceE-EEEEecC---CC-EEEEEe------CCCcEEEEEcCCCeEEEEeecCCccE------------------
Q psy226          189 HDH----NVT-GVAFLPN---SD-FVLSAS------RDKTIKMWEVATGYCVKTLTGHREWV------------------  235 (406)
Q Consensus       189 h~~----~v~-~~~~~p~---~~-~l~s~s------~d~~i~iwd~~~~~~~~~~~~~~~~v------------------  235 (406)
                      ...    .+. +.....+   ++ .+++++      .++.|.-+|..+|+.+.........+                  
T Consensus       146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~  225 (582)
T 1flg_A          146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence            321    111 1111111   22 566655      37899999999998776543210000                  


Q ss_pred             -----------------------EEEEECCCCCEEEEEeC--------------------C----CeEEEEeCCCcccee
Q psy226          236 -----------------------RQIKVSPDGTLLASCSN--------------------D----HTARVWSLATKETKA  268 (406)
Q Consensus       236 -----------------------~~l~~~~~~~~l~s~~~--------------------d----~~v~vwd~~~~~~~~  268 (406)
                                             ..++++|+..+++.+..                    |    +.|..+|..+++.+-
T Consensus       226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W  305 (582)
T 1flg_A          226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence                                   13466677777766653                    2    578999998887765


Q ss_pred             EEecCCceEEEEEeCCCC-CccccccccCCCCCCCCC---CEEEEEeCCCcEEEEECCCCeEEEEEeCCC--cCE-----
Q psy226          269 ELRGHDHTVECVAWAPGV-ASESISEAAGRPPGQGGG---PYLATGSRDKTIKLWDVGSGSLLFTLIGHD--NWV-----  337 (406)
Q Consensus       269 ~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~--~~v-----  337 (406)
                      .++...+..    |.-+. ....+....     ..+|   ..++.++.+|.++++|..+|+.+..+....  ++.     
T Consensus       306 ~~q~~~~d~----wd~~~~~~p~l~~~~-----~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~  376 (582)
T 1flg_A          306 FYQHTPNDA----WDFSGNNELVLFDYK-----AKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDL  376 (582)
T ss_dssp             EEESSTTCC----SCCCCCCCCEEEEEE-----CSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECT
T ss_pred             EEeCCCCCc----ccccCCCCcEEEeee-----cCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccc
Confidence            543211100    00000 000000000     0123   378889999999999999999887654331  111     


Q ss_pred             --------------------------------------EEEEEcCCCCEEEEEe--------------------------
Q psy226          338 --------------------------------------RGVTFHPGGKYLVSCG--------------------------  353 (406)
Q Consensus       338 --------------------------------------~~l~~s~~g~~l~sgs--------------------------  353 (406)
                                                            ..++++|+...+++..                          
T Consensus       377 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  456 (582)
T 1flg_A          377 KTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFR  456 (582)
T ss_dssp             TTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceecccee
Confidence                                                  1346666655554432                          


Q ss_pred             -------CCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          354 -------DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       354 -------~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                             .+|.|..||..+++.+-+..... .+..-.....+.+++.|+.||.++.||.+
T Consensus       457 ~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~  515 (582)
T 1flg_A          457 IKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAK  515 (582)
T ss_dssp             EEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETT
T ss_pred             ecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECC
Confidence                   36889999999988764443221 11111122246678889999999999863

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.87  E-value=1.5e-06  Score=85.27  Aligned_cols=275  Identities=12%  Similarity=0.095  Sum_probs=158.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEeccccc----Ceee--EEECC--CCC-EEEEEeC------CCcEEEEeCCCCeE
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHLD----SVQD--IAFDQ--SGK-LLVSCSA------DMSLKLWDMSTYQC  182 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~----~V~~--l~~~~--~g~-~l~sgs~------d~~i~vwd~~~~~~  182 (406)
                      +..++.++.|+.|.-+|..+|+..-.......    .+.+  +....  +|+ .+++++.      ++.|.-+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45678888999999999999998765543210    1111  11111  233 5666553      78999999999988


Q ss_pred             EEEEecCCcce-----------------------------------------EEEEEecCCCEEEEEeC-----------
Q psy226          183 LKTMQGHDHNV-----------------------------------------TGVAFLPNSDFVLSASR-----------  210 (406)
Q Consensus       183 ~~~~~~h~~~v-----------------------------------------~~~~~~p~~~~l~s~s~-----------  210 (406)
                      +.........+                                         ..+++.|..++++.+..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            76543211000                                         13566777777776653           


Q ss_pred             ---------C----CcEEEEEcCCCeEEEEeec--CCc--------cEEEEEEC-CCCC---EEEEEeCCCeEEEEeCCC
Q psy226          211 ---------D----KTIKMWEVATGYCVKTLTG--HRE--------WVRQIKVS-PDGT---LLASCSNDHTARVWSLAT  263 (406)
Q Consensus       211 ---------d----~~i~iwd~~~~~~~~~~~~--~~~--------~v~~l~~~-~~~~---~l~s~~~d~~v~vwd~~~  263 (406)
                               |    +.|..+|..+|+.+..++.  |..        ++. +... .+|+   .++.++.+|.++++|..+
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                     2    5899999999998887753  321        121 1221 4674   788899999999999999


Q ss_pred             ccceeEEecCCc--eEEEEE-----------eCCCCC---ccccccccCCCC-----------CCCCCCEEEEE------
Q psy226          264 KETKAELRGHDH--TVECVA-----------WAPGVA---SESISEAAGRPP-----------GQGGGPYLATG------  310 (406)
Q Consensus       264 ~~~~~~~~~~~~--~v~~~~-----------~~~~~~---~~~~~~~~~~~~-----------~~~~~~~l~s~------  310 (406)
                      ++.+-.......  ....+.           +.|...   ..........|.           .++....+++.      
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  435 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence            887765543320  011110           111000   000000000000           00011112221      


Q ss_pred             ---------------------------eCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy226          311 ---------------------------SRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       311 ---------------------------~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~  363 (406)
                                                 ..+|.|.-||+.+|+.+-....... +..-.....+..++.|+.|+.++.||.
T Consensus       436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~g~~dg~l~A~D~  514 (582)
T 1flg_A          436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC-CcccceEeCCCEEEEECCCCcEEEEEC
Confidence                                       1367899999999998876653321 111111124667888999999999999


Q ss_pred             CCCccceeeccccceE-EEEEEeCCCC-EEEEe
Q psy226          364 ANKRNMKTLEAHSHFV-TSLDFHRAHP-YVVTG  394 (406)
Q Consensus       364 ~~~~~~~~l~~h~~~v-~~l~~~~~~~-~l~sg  394 (406)
                      .+++.+-+++.....+ .-+.|..+|+ |+++.
T Consensus       515 ~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          515 KSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence            9999887776543321 2255666775 55543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.87  E-value=1.7e-06  Score=74.60  Aligned_cols=190  Identities=11%  Similarity=0.155  Sum_probs=127.1

Q ss_pred             eEEEEEecCCcc--eEEEEEecCCCEEEEEeCCC--cEEEEEcCCCeEEEEeecCCcc-EEEEEECCCCCEEE-EEeCCC
Q psy226          181 QCLKTMQGHDHN--VTGVAFLPNSDFVLSASRDK--TIKMWEVATGYCVKTLTGHREW-VRQIKVSPDGTLLA-SCSNDH  254 (406)
Q Consensus       181 ~~~~~~~~h~~~--v~~~~~~p~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~-s~~~d~  254 (406)
                      +.++++ .|...  ..++.|+ ++.+..+.+.+|  .|+.+|+.+++.+..+...... -..+++  ++..+. ..-.++
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~  107 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSS
T ss_pred             EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCC
Confidence            345555 35433  4788998 666666777766  8999999999988887654332 233444  344444 444689


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC-
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH-  333 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h-  333 (406)
                      .+.++|..+.+.+..+...... ..+++                    ++..|+.+..++.|.++|..+.+.+.++.-. 
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~eG-~glt~--------------------dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~  166 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDGEG-WGLTH--------------------NDQYLIMSDGTPVLRFLDPESLTPVRTITVTA  166 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSSCC-CCEEE--------------------CSSCEEECCSSSEEEEECTTTCSEEEEEECEE
T ss_pred             EEEEEECccCcEEEEEECCCCc-eEEec--------------------CCCEEEEECCCCeEEEEcCCCCeEEEEEEecc
Confidence            9999999998877766532211 11111                    2344555555788999999999888776432 


Q ss_pred             -C---cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc------------cceEEEEEEeCCCCEEEEeeC
Q psy226          334 -D---NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH------------SHFVTSLDFHRAHPYVVTGSV  396 (406)
Q Consensus       334 -~---~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h------------~~~v~~l~~~~~~~~l~sgs~  396 (406)
                       .   ..++.+.|. +|+..+..-.+..|.+.|..+++.+..+...            ....+.+||+|+++.|...+.
T Consensus       167 ~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          167 HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence             1   335567776 6766665657889999999999988777531            235789999998876655543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.87  E-value=3.7e-06  Score=78.20  Aligned_cols=255  Identities=11%  Similarity=0.019  Sum_probs=154.6

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEe
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV-SCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~-sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      -+|.+..+. .+|+.+ ....|+..++.++.....+.+ ...+..++|++.+..|+ +-...+.|..+++........+.
T Consensus        79 ~~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  155 (386)
T 3v65_B           79 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  155 (386)
T ss_dssp             SCEEECSSC-CEEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred             CeECCcccc-ceeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence            446666663 333333 346788889887766555543 34578999997665555 44466889999987654333333


Q ss_pred             cCCcceEEEEEecCCCEE-EEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEE-EEEeCC-CeEEEEeCCCc
Q psy226          188 GHDHNVTGVAFLPNSDFV-LSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLL-ASCSND-HTARVWSLATK  264 (406)
Q Consensus       188 ~h~~~v~~~~~~p~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~d-~~v~vwd~~~~  264 (406)
                      .......++++.+.+..| ++-...+.|.+.++........+.........++++|.+..| ++-... +.|..+++...
T Consensus       156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~  235 (386)
T 3v65_B          156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  235 (386)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence            223345678898865555 444556788888876544333344444567899999866554 444444 78888888654


Q ss_pred             cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcC
Q psy226          265 ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHP  344 (406)
Q Consensus       265 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~  344 (406)
                      ...............++++|.                 .+.+.++-+..+.|..+|+........+........++++ .
T Consensus       236 ~~~~~~~~~~~~PnGlavd~~-----------------~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~  297 (386)
T 3v65_B          236 GRRIIADTHLFWPNGLTIDYA-----------------GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-F  297 (386)
T ss_dssp             SCEEEECSSCSCEEEEEEEGG-----------------GTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-E
T ss_pred             CcEEEEECCCCCeeeEEEeCC-----------------CCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-E
Confidence            333333223334567777753                 2344455556678999988643332233333445778888 3


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEE
Q psy226          345 GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF  384 (406)
Q Consensus       345 ~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~  384 (406)
                      .+..+++-...+.|..+|..+++.+..+.........|++
T Consensus       298 ~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v  337 (386)
T 3v65_B          298 EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT  337 (386)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred             CCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence            4555666667889999997777766666433223334443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.86  E-value=7.5e-07  Score=87.31  Aligned_cols=270  Identities=14%  Similarity=0.084  Sum_probs=155.8

Q ss_pred             EEEEeCCCcEEEEEcCCCcEEEEecccc----cCeee-EEECCCCCEEEEEe------CCCcEEEEeCCCCeEEEEEecC
Q psy226          121 MASCSEDATIRLWDYETGEYERALHGHL----DSVQD-IAFDQSGKLLVSCS------ADMSLKLWDMSTYQCLKTMQGH  189 (406)
Q Consensus       121 latgs~dg~v~vwd~~~~~~~~~~~~h~----~~V~~-l~~~~~g~~l~sgs------~d~~i~vwd~~~~~~~~~~~~h  189 (406)
                      |+.++.|+.|.-+|..+|+..-......    ..+.+ -.+. ++ .++.++      .++.|.-+|..+++.+..+...
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            8888899999999999999876543211    02221 1111 34 455554      3899999999999987766532


Q ss_pred             Ccc-------------------------------------e-EEEEEecCCCEEEEEeCC----------------CcEE
Q psy226          190 DHN-------------------------------------V-TGVAFLPNSDFVLSASRD----------------KTIK  215 (406)
Q Consensus       190 ~~~-------------------------------------v-~~~~~~p~~~~l~s~s~d----------------~~i~  215 (406)
                      ...                                     + ..+++.+..++++.++.+                ++|.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            211                                     0 135667777888877665                3799


Q ss_pred             EEEcCCCeEEEEeecCC--c--------cEEEEEEC-CCC---CEEEEEeCCCeEEEEeCCCccceeEEecCC-------
Q psy226          216 MWEVATGYCVKTLTGHR--E--------WVRQIKVS-PDG---TLLASCSNDHTARVWSLATKETKAELRGHD-------  274 (406)
Q Consensus       216 iwd~~~~~~~~~~~~~~--~--------~v~~l~~~-~~~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-------  274 (406)
                      .+|..+|+.+..++...  .        ++. +... .+|   ..++.++.+|.+.++|..+++.+-......       
T Consensus       282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~  360 (599)
T 1w6s_A          282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS  360 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence            99999999887765422  1        121 2222 567   467788999999999999888765443211       


Q ss_pred             ------ceEE--------------------------EEEeCCCCCcccccc------c-cCCCCCCCCCCEE------EE
Q psy226          275 ------HTVE--------------------------CVAWAPGVASESISE------A-AGRPPGQGGGPYL------AT  309 (406)
Q Consensus       275 ------~~v~--------------------------~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~l------~s  309 (406)
                            .++.                          .++++|......+..      . ...........++      ..
T Consensus       361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  440 (599)
T 1w6s_A          361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP  440 (599)
T ss_dssp             ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence                  1111                          111111110000000      0 0000000011111      11


Q ss_pred             --Ee------CCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceE-E
Q psy226          310 --GS------RDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFV-T  380 (406)
Q Consensus       310 --~~------~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v-~  380 (406)
                        .+      .+|.|.-||+.+++.+-........... .+...+..|+.++.|+.++.||..+++.+-+++.....+ .
T Consensus       441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~  519 (599)
T 1w6s_A          441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGY  519 (599)
T ss_dssp             CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEec
Confidence              01      4578999999999988766421111111 112246778889999999999999999887765432211 2


Q ss_pred             EEEEeCCCC-EEEEe
Q psy226          381 SLDFHRAHP-YVVTG  394 (406)
Q Consensus       381 ~l~~~~~~~-~l~sg  394 (406)
                      -+.+..+|+ |+++.
T Consensus       520 P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          520 PMTYTHKGTQYVAIY  534 (599)
T ss_dssp             CEEEEETTEEEEEEE
T ss_pred             cEEEEeCCEEEEEEE
Confidence            244556665 55543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.85  E-value=3e-06  Score=72.36  Aligned_cols=180  Identities=16%  Similarity=0.156  Sum_probs=120.9

Q ss_pred             CeeeEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEecCCcce-EEEEEecCCCEE-EEEeCCCcEEEEEcCCCeEE
Q psy226          150 SVQDIAFDQSGKLLVSCSADM--SLKLWDMSTYQCLKTMQGHDHNV-TGVAFLPNSDFV-LSASRDKTIKMWEVATGYCV  225 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs~d~--~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~p~~~~l-~s~s~d~~i~iwd~~~~~~~  225 (406)
                      -...|.|++ +.+..+.+.+|  .|+.+|+.+++.+.......... .++++.  ++.| ...-.++.+.++|..+.+.+
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEE
Confidence            466899986 55566666654  89999999999988776543322 234443  4444 44556899999999999999


Q ss_pred             EEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCC--c---eEEEEEeCCCCCccccccccCCCCC
Q psy226          226 KTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHD--H---TVECVAWAPGVASESISEAAGRPPG  300 (406)
Q Consensus       226 ~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~---~v~~~~~~~~~~~~~~~~~~~~~~~  300 (406)
                      .++...... ..++  +++..|+.+..++.|.++|..+.+....+.-..  .   .+..+.|.                 
T Consensus        99 ~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-----------------  158 (243)
T 3mbr_X           99 ARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-----------------  158 (243)
T ss_dssp             EEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-----------------
T ss_pred             EEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-----------------
Confidence            888743322 2333  566666666678999999998877665554211  1   12223332                 


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC-------------CcCEEEEEEcCCCCEEEEEeC
Q psy226          301 QGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH-------------DNWVRGVTFHPGGKYLVSCGD  354 (406)
Q Consensus       301 ~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h-------------~~~v~~l~~s~~g~~l~sgs~  354 (406)
                        +|...+..-.++.|.+.|..+|+.+..+.-.             .+-.+.|+++|+++.|+..+.
T Consensus       159 --~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          159 --NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             --TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             --CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence              3444544446789999999999998876521             135689999998877766663

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.82  E-value=2.5e-05  Score=79.67  Aligned_cols=273  Identities=10%  Similarity=0.012  Sum_probs=167.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec--------------ccccCeeeEEECCCCCEEEEEeCCCc
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH--------------GHLDSVQDIAFDQSGKLLVSCSADMS  171 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~--------------~h~~~V~~l~~~~~g~~l~sgs~d~~  171 (406)
                      ...|.++...+++.+.+ |...+-|.++|..++.+.....              .....|.++...++|.+ -.|+.++-
T Consensus       257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBSSC
T ss_pred             CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecCCe
Confidence            35688888888776544 5554668889988776433221              12356899999988874 45666667


Q ss_pred             EEEEeCCCCeEEEEEe---------cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe---ecCCccEEEEE
Q psy226          172 LKLWDMSTYQCLKTMQ---------GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIK  239 (406)
Q Consensus       172 i~vwd~~~~~~~~~~~---------~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~~~~~v~~l~  239 (406)
                      |..++..+........         .....|.++...+++. |..|+.++-|..||..++......   ......|.++.
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~  413 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL  413 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred             EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence            8888876543322110         0234688888877766 556666667888998765332111   12345788999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEeCCCccceeEEe--cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEE
Q psy226          240 VSPDGTLLASCSNDHTARVWSLATKETKAELR--GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIK  317 (406)
Q Consensus       240 ~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  317 (406)
                      ..++|.+.+ |+.++.+..+|..++.......  .....|.++...+                  .+ .+..|+. +-|.
T Consensus       414 ~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~------------------~g-~lwigt~-~Gl~  472 (781)
T 3v9f_A          414 KDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK------------------NK-KIWIGTH-AGVF  472 (781)
T ss_dssp             ECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT------------------TS-EEEEEET-TEEE
T ss_pred             ECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC------------------CC-CEEEEEC-CceE
Confidence            888887554 6777778889876553221111  1224455555443                  23 3555565 5588


Q ss_pred             EEECCCCeEEEEEeCC-----CcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc----ccceEEEEEEeCCC
Q psy226          318 LWDVGSGSLLFTLIGH-----DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA----HSHFVTSLDFHRAH  388 (406)
Q Consensus       318 lwd~~~~~~~~~~~~h-----~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~----h~~~v~~l~~~~~~  388 (406)
                      .||..+++........     ...|.++...++|...+....+| |..||..+++. ..+..    ....|.++...+++
T Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g  550 (781)
T 3v9f_A          473 VIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKG  550 (781)
T ss_dssp             EEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTS
T ss_pred             EEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCC
Confidence            8998776543322222     46799999999998766544344 77788766542 22221    23568999999998


Q ss_pred             CEEEEeeCCCeEEEeec
Q psy226          389 PYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       389 ~~l~sgs~Dg~v~iw~~  405 (406)
                      .+.++.. +|.|..||.
T Consensus       551 ~lWi~T~-~Glv~~~d~  566 (781)
T 3v9f_A          551 QMWLATG-EGLVCFPSA  566 (781)
T ss_dssp             CEEEEET-TEEEEESCT
T ss_pred             CEEEEEC-CCceEEECC
Confidence            8666543 666466653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=3e-05  Score=79.01  Aligned_cols=271  Identities=12%  Similarity=0.045  Sum_probs=165.7

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc-------cccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHG-------HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~-------h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      ..|.++...+++.+.+.. .+ -+.+||..++++......       ....|.++...++|.+. .|+..+-|.++|..+
T Consensus       211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCC
Confidence            468889888888766654 34 588999887765432221       23569999998887655 455545588888876


Q ss_pred             CeEEEEEe--------------cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee---------cCCccEE
Q psy226          180 YQCLKTMQ--------------GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT---------GHREWVR  236 (406)
Q Consensus       180 ~~~~~~~~--------------~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---------~~~~~v~  236 (406)
                      .+......              .....|.++...++|. |..|+.++-|..++..++.......         .....|.
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  366 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS  366 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence            54322111              1235688988887776 5567777778889876553222110         1235689


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCCccceeEE---ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC
Q psy226          237 QIKVSPDGTLLASCSNDHTARVWSLATKETKAEL---RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD  313 (406)
Q Consensus       237 ~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  313 (406)
                      ++..+++|. |..|+.++-|..+|..+.......   ......|.++...+                  .+. |..|+.+
T Consensus       367 ~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~------------------~g~-lWigt~~  426 (781)
T 3v9f_A          367 SVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS------------------EGN-LWFGTYL  426 (781)
T ss_dssp             EEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT------------------TSC-EEEEETT
T ss_pred             EEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC------------------CCC-EEEEecc
Confidence            999988887 455666677888887643221110   11223455554432                  233 5557777


Q ss_pred             CcEEEEECCCCeEEEEEe--CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc-----cceEEEEEEeC
Q psy226          314 KTIKLWDVGSGSLLFTLI--GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH-----SHFVTSLDFHR  386 (406)
Q Consensus       314 ~~i~lwd~~~~~~~~~~~--~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h-----~~~v~~l~~~~  386 (406)
                      +-|..+|..+++......  .....|.++...++|...+. .. +-|.++|..+++........     ...|.++...+
T Consensus       427 ~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~  504 (781)
T 3v9f_A          427 GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS  504 (781)
T ss_dssp             EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT
T ss_pred             CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC
Confidence            778999987776433221  13467999999988876554 44 45888998765543222111     35799999999


Q ss_pred             CCCEEEEeeCCCeEEEee
Q psy226          387 AHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       387 ~~~~l~sgs~Dg~v~iw~  404 (406)
                      ++.+.+....+| +..||
T Consensus       505 ~g~lWigt~~~G-l~~~~  521 (781)
T 3v9f_A          505 EGRFWIGTFGGG-VGIYT  521 (781)
T ss_dssp             TCCEEEEESSSC-EEEEC
T ss_pred             CCCEEEEEcCCC-EEEEe
Confidence            988766443345 44454

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.79  E-value=9.7e-07  Score=76.07  Aligned_cols=169  Identities=14%  Similarity=0.138  Sum_probs=120.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCe--eeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSV--QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V--~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      ...+.|+. +.+..+.+.+|.|+++|+.+++....+ -. ...  ..+++..+ ++.+..-.++.+.++|..+++.+.++
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEE
Confidence            45788874 678888899999999999999987776 22 222  33555432 33444456889999999999999888


Q ss_pred             ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC--C---ccEEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy226          187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH--R---EWVRQIKVSPDGTLLASCSNDHTARVWSL  261 (406)
Q Consensus       187 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~--~---~~v~~l~~~~~~~~l~s~~~d~~v~vwd~  261 (406)
                      .... .-.+++  ++++.|+.+..++.|.++|..+.+.+.++.-.  .   ..++.+.|. +|++++..-.+..|.+.|.
T Consensus       133 ~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp  208 (268)
T 3nok_A          133 RYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP  208 (268)
T ss_dssp             ECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred             eCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence            7432 223444  56788877777899999999999888776532  2   234667776 7776666667889999999


Q ss_pred             CCccceeEEecC-------------CceEEEEEeCCC
Q psy226          262 ATKETKAELRGH-------------DHTVECVAWAPG  285 (406)
Q Consensus       262 ~~~~~~~~~~~~-------------~~~v~~~~~~~~  285 (406)
                      .+++.+..+...             ......++|.|.
T Consensus       209 ~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~  245 (268)
T 3nok_A          209 ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG  245 (268)
T ss_dssp             TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred             CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence            998876655421             135577888774

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.77  E-value=8e-06  Score=69.74  Aligned_cols=190  Identities=14%  Similarity=0.162  Sum_probs=125.4

Q ss_pred             eEEEEEecCCc--ceEEEEEecCCCEEEEEeCC--CcEEEEEcCCCeEEEEeecCCc-cEEEEEECCCCCEEEEEeCCCe
Q psy226          181 QCLKTMQGHDH--NVTGVAFLPNSDFVLSASRD--KTIKMWEVATGYCVKTLTGHRE-WVRQIKVSPDGTLLASCSNDHT  255 (406)
Q Consensus       181 ~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~s~~~d~~  255 (406)
                      +.+.++ .|+.  -..++.|++ +.+..+.+.+  ..|+.+|+.+++.+..+..... .-..+++. .+++....-.++.
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~   86 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence            445555 4553  356899986 5555666664  4899999999998887764432 22334443 2344455557899


Q ss_pred             EEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC-
Q psy226          256 ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD-  334 (406)
Q Consensus       256 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~-  334 (406)
                      +.++|..+.+.+..+...... ..+++                    ++..|+.+..++.|.++|..+.+.+.++.-.. 
T Consensus        87 v~v~D~~tl~~~~ti~~~~~G-wglt~--------------------dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~  145 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGEG-WALTS--------------------DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG  145 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSCC-CEEEE--------------------CSSCEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred             EEEEECCcCcEEEEEeCCCCc-eEEee--------------------CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC
Confidence            999999998887776543221 12221                    23345555568899999999998887765321 


Q ss_pred             ----cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc-------------cceEEEEEEeCCCCEEEEee
Q psy226          335 ----NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH-------------SHFVTSLDFHRAHPYVVTGS  395 (406)
Q Consensus       335 ----~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h-------------~~~v~~l~~~~~~~~l~sgs  395 (406)
                          ..++.+.+. +|+..+..-.+..|.+.|..+++.+..+...             ....+.+|++|++..|...+
T Consensus       146 g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          146 GRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence                245666765 6765555556789999999999987776521             23678999999876654444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.77  E-value=9.8e-06  Score=72.67  Aligned_cols=226  Identities=10%  Similarity=0.011  Sum_probs=133.8

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC-C-cEEEEeCCCCeEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD-M-SLKLWDMSTYQCLK  184 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d-~-~i~vwd~~~~~~~~  184 (406)
                      .....++++|+++++++-..++.|..||..++ ....+. -...+..+++.++|+++++.... + .|..+|..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            45678999999998888778899999998764 333332 23468899999999966655432 2 46667777776533


Q ss_pred             EEec-CCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe-EEEEee---------cCCccEEEEEECCCCCEE-EEEeC
Q psy226          185 TMQG-HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY-CVKTLT---------GHREWVRQIKVSPDGTLL-ASCSN  252 (406)
Q Consensus       185 ~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~---------~~~~~v~~l~~~~~~~~l-~s~~~  252 (406)
                      .... .......++..+++..+++-..++.|..+|..++. .+....         +.-...+.+  +|++..+ ++-..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            2221 11223455555554445554468888888876542 121111         111234455  7787655 55556


Q ss_pred             CCeEEEEeCCC-ccc--eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE-
Q psy226          253 DHTARVWSLAT-KET--KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF-  328 (406)
Q Consensus       253 d~~v~vwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~-  328 (406)
                      .+.|..+++.. +..  ...+... .....+++.+                  +|.+.++....+.|.++|.. ++... 
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~------------------dG~l~va~~~~~~V~~~~~~-G~~~~~  247 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDV------------------EGNLYGATHIYNSVVRIAPD-RSTTII  247 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBT------------------TCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred             CCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECC------------------CCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence            78999999864 211  1111000 0111122222                  46666666667889999975 65532 


Q ss_pred             -EEeCCCcCEEEEEEc---CCCCEEEEEeCCC
Q psy226          329 -TLIGHDNWVRGVTFH---PGGKYLVSCGDDK  356 (406)
Q Consensus       329 -~~~~h~~~v~~l~~s---~~g~~l~sgs~d~  356 (406)
                       .+.......++++|.   |+++.|+.++..+
T Consensus       248 ~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          248 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             ECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             eecccccCCceEEEEecccCCCCEEEEECCCC
Confidence             233233568999998   8888777666543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.76  E-value=4.5e-06  Score=71.95  Aligned_cols=188  Identities=11%  Similarity=0.105  Sum_probs=126.1

Q ss_pred             EEEEEecCCcc--eEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Q psy226          182 CLKTMQGHDHN--VTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVW  259 (406)
Q Consensus       182 ~~~~~~~h~~~--v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vw  259 (406)
                      .+.++ .|...  ..++.|+ ++.+..+.+.+|.|+.+|+.+++.+..+......-..+++.. +++.+..-.++.+.+|
T Consensus        45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~  121 (268)
T 3nok_A           45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTW  121 (268)
T ss_dssp             EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEE
T ss_pred             EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEE
Confidence            34444 34432  3688887 456677788888999999999988777622222334466543 3445555578999999


Q ss_pred             eCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC--CC---
Q psy226          260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG--HD---  334 (406)
Q Consensus       260 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~--h~---  334 (406)
                      |..+.+.+.++...... ..+++                    ++..|+.+..++.|.++|..+.+.+.++.-  +.   
T Consensus       122 D~~Tl~~~~ti~~~~eG-wGLt~--------------------Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v  180 (268)
T 3nok_A          122 SGMPPQRERTTRYSGEG-WGLCY--------------------WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV  180 (268)
T ss_dssp             ETTTTEEEEEEECSSCC-CCEEE--------------------ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             ECCcCcEEEEEeCCCce-eEEec--------------------CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc
Confidence            99998877766532111 11111                    245566666788999999999988877653  21   


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc-------------cceEEEEEEeCCCC-EEEEe
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH-------------SHFVTSLDFHRAHP-YVVTG  394 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h-------------~~~v~~l~~~~~~~-~l~sg  394 (406)
                      ..++.+.|. +|+..+....+..|.+.|..+++.+..+...             ....+.+||+|++. +++||
T Consensus       181 ~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          181 ELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             ccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            245677776 7765555556889999999999988776532             13678999999765 45555

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.72  E-value=0.00012  Score=65.86  Aligned_cols=226  Identities=10%  Similarity=0.005  Sum_probs=136.8

Q ss_pred             CcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEE-eCCCcEEEEeCCC----CeEEEEEecCCcceEEEEEecCC
Q psy226          128 ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSC-SADMSLKLWDMST----YQCLKTMQGHDHNVTGVAFLPNS  202 (406)
Q Consensus       128 g~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sg-s~d~~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~p~~  202 (406)
                      ..|+..|+.+.+....+. ....+.+++|++.+..|+.+ ..++.|..+++.+    ......+...-....++++.+.+
T Consensus        10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            568888988877665554 34567899999876555544 4568899999875    22122222222355789998765


Q ss_pred             CEE-EEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe-CC-CeEEEEeCCCccceeEEecCCceEEE
Q psy226          203 DFV-LSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS-ND-HTARVWSLATKETKAELRGHDHTVEC  279 (406)
Q Consensus       203 ~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d-~~v~vwd~~~~~~~~~~~~~~~~v~~  279 (406)
                      ..| ++-...+.|.+.+.........+.........++++|.+..++.+. .. +.|...++............-.....
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~g  168 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  168 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceE
Confidence            555 4445678899999875444333333445678999998655544443 33 68888887543322222222334567


Q ss_pred             EEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE--EEEEeCCCcCEEEEEEcCCCCEEEEEeCCCe
Q psy226          280 VAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL--LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKT  357 (406)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~--~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~  357 (406)
                      +++.|.                 .+.+.++-+..+.|..+|+.....  +...........++++. .+..+++-...+.
T Consensus       169 la~d~~-----------------~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~  230 (316)
T 1ijq_A          169 ITLDLL-----------------SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  230 (316)
T ss_dssp             EEEETT-----------------TTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             EEEecc-----------------CCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe
Confidence            777763                 234445555667899999864322  21211223456788885 3555666667789


Q ss_pred             EEEEeCCCCccceee
Q psy226          358 LRVWDTANKRNMKTL  372 (406)
Q Consensus       358 i~vwd~~~~~~~~~l  372 (406)
                      |..+|..+++.+..+
T Consensus       231 V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          231 IFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEETTTCCCCEEE
T ss_pred             EEEEeCCCCcceEEE
Confidence            999998777655554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.72  E-value=8.4e-05  Score=67.28  Aligned_cols=267  Identities=11%  Similarity=0.073  Sum_probs=145.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-EEEE-ec--ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE-YERA-LH--GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~-~~~~-~~--~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~  181 (406)
                      ...+.+|.|.+.+..+++ +..|.|. .....|+ .... ..  .....+.+|.|.+ +..++ ++.++.|.. ....++
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence            457999999888888885 4567553 3333332 1221 11  1234688899976 44444 455665443 222233


Q ss_pred             EEEEEe---cCCcceEEEEEecCCCEEEEEeCCCcEEE-EEcCCCeEE-EEeecCCccEEEEEECCCCCEEEEEeCCCeE
Q psy226          182 CLKTMQ---GHDHNVTGVAFLPNSDFVLSASRDKTIKM-WEVATGYCV-KTLTGHREWVRQIKVSPDGTLLASCSNDHTA  256 (406)
Q Consensus       182 ~~~~~~---~h~~~v~~~~~~p~~~~l~s~s~d~~i~i-wd~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v  256 (406)
                      .-..+.   .+...+..+.+.+++..++++ .++.|.. .|  .|..- ....+....+..+.+.|++.+++.+...+..
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~  186 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFY  186 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEE
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence            222221   223457788887776655554 4555432 22  23221 2223455678889999999888776555444


Q ss_pred             EEEeC--CCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-C-
Q psy226          257 RVWSL--ATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI-G-  332 (406)
Q Consensus       257 ~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~-~-  332 (406)
                      +-+|-  .+-+..  -......+..+.+.|                  ++. ++.++.+|.+++.+...|+.-..+. . 
T Consensus       187 ~S~d~gG~tW~~~--~~~~~~~~~~~~~~~------------------~g~-~~~~~~~G~~~~s~~D~G~tW~~~~~~~  245 (327)
T 2xbg_A          187 STWEPGQTAWEPH--NRTTSRRLHNMGFTP------------------DGR-LWMIVNGGKIAFSDPDNSENWGELLSPL  245 (327)
T ss_dssp             EEECTTCSSCEEE--ECCSSSCEEEEEECT------------------TSC-EEEEETTTEEEEEETTEEEEECCCBCTT
T ss_pred             EEeCCCCCceeEC--CCCCCCccceeEECC------------------CCC-EEEEeCCceEEEecCCCCCeeEeccCCc
Confidence            44553  222222  122334556666654                  233 4455567777776422233222221 1 


Q ss_pred             --CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc---ccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          333 --HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA---HSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       333 --h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~---h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                        +...+.++.+.+++..++++. ++.| .+....++.-..+..   ....+.++.|.+++. ++.++.+|.|.-++
T Consensus       246 ~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          246 RRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             SSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             ccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence              223588999998887777655 6766 344555554444432   234567888876555 55566789887654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.71  E-value=1.1e-05  Score=76.07  Aligned_cols=153  Identities=14%  Similarity=0.248  Sum_probs=98.5

Q ss_pred             CeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC-C----cEEEEeCCC-C
Q psy226          108 PVIKVIFHP-VFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD-M----SLKLWDMST-Y  180 (406)
Q Consensus       108 ~V~~v~~~p-~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d-~----~i~vwd~~~-~  180 (406)
                      ....++++| +...|..+...+.|+.+|..++....... .......|+|+++|++|+.+... +    .+.+.+... .
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            356889998 45555555555889999998876554443 44567899999999966665542 2    233344321 1


Q ss_pred             eEEEEEecCCcceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCeEEEEee-cCCccEEEEEECCCCCE-EEEEeCCCeEE
Q psy226          181 QCLKTMQGHDHNVTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTLT-GHREWVRQIKVSPDGTL-LASCSNDHTAR  257 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~-l~s~~~d~~v~  257 (406)
                      .....+.. .....+++++| ++.++++-..++.|..++..++....... +...+...++++|+|++ +++-...+.|.
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            11122222 23356788999 66666666677889999988765422222 22245678999999994 55556788999


Q ss_pred             EEeCC
Q psy226          258 VWSLA  262 (406)
Q Consensus       258 vwd~~  262 (406)
                      .++..
T Consensus       296 ~~~~d  300 (430)
T 3tc9_A          296 RSDYD  300 (430)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            98865

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.70  E-value=1.1e-06  Score=89.04  Aligned_cols=238  Identities=11%  Similarity=0.062  Sum_probs=131.2

Q ss_pred             CeEEEEEc-CCCCEEEEEe-CCC----cEEEEEcCCC-cEEE-EecccccCeeeEEECCCCCEEEEEeCC-----CcEEE
Q psy226          108 PVIKVIFH-PVFSLMASCS-EDA----TIRLWDYETG-EYER-ALHGHLDSVQDIAFDQSGKLLVSCSAD-----MSLKL  174 (406)
Q Consensus       108 ~V~~v~~~-p~~~~latgs-~dg----~v~vwd~~~~-~~~~-~~~~h~~~V~~l~~~~~g~~l~sgs~d-----~~i~v  174 (406)
                      .+...+|| |||++||-+. .+|    +|+++|+.++ +... .+.   ....+++|+|||+.|+....|     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67789999 9999888443 333    4999999998 6321 111   124578999999888777665     25778


Q ss_pred             EeCCCCeE--EEEEe-cCCcceEEEEEecCCCEEEEEeC---CCcEEEEEcCCCe-EE--EEee-cCCccEEEEEECCCC
Q psy226          175 WDMSTYQC--LKTMQ-GHDHNVTGVAFLPNSDFVLSASR---DKTIKMWEVATGY-CV--KTLT-GHREWVRQIKVSPDG  244 (406)
Q Consensus       175 wd~~~~~~--~~~~~-~h~~~v~~~~~~p~~~~l~s~s~---d~~i~iwd~~~~~-~~--~~~~-~~~~~v~~l~~~~~~  244 (406)
                      +++.+++.  ...+. .......++.|+|+|++|+..+.   ...|.++|+.++. ..  ..+. ........+.|+.++
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            88876531  22222 22234567899999998876553   3468888987752 12  3332 233344445544333


Q ss_pred             CEEEEEeCC----CeEEEEeCCCccceeE-EecCCc--eEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCc--
Q psy226          245 TLLASCSND----HTARVWSLATKETKAE-LRGHDH--TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT--  315 (406)
Q Consensus       245 ~~l~s~~~d----~~v~vwd~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~--  315 (406)
                      .+++....+    ..|..+|+.+...... +..+..  .+..+.+.                   ++.++++...++.  
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-------------------~~~lv~~~~~~g~~~  392 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-------------------SNYLVVAGRRAGLTR  392 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-------------------SSEEEEEEEETTEEE
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-------------------CCEEEEEEEeCCEEE
Confidence            344444433    2566667654222222 333332  34444432                   2345667777775  


Q ss_pred             EEEEEC-------CCCeEEEEEeC-CCcCEEEEEE----cCCCC-EEEEEeCC---CeEEEEeCCCCc
Q psy226          316 IKLWDV-------GSGSLLFTLIG-HDNWVRGVTF----HPGGK-YLVSCGDD---KTLRVWDTANKR  367 (406)
Q Consensus       316 i~lwd~-------~~~~~~~~~~~-h~~~v~~l~~----s~~g~-~l~sgs~d---~~i~vwd~~~~~  367 (406)
                      |.++|+       ..+.....+.- ....+..+.+    ++++. ++++.+..   ..++.+|+.+++
T Consensus       393 l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          393 IWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             EEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             EEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            555665       33331223221 1122333432    34554 44444432   457777776554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.70  E-value=5.7e-05  Score=69.06  Aligned_cols=235  Identities=11%  Similarity=0.043  Sum_probs=138.7

Q ss_pred             cCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEE-eCCCcEEEEEcCCCeEEEE
Q psy226          149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSA-SRDKTIKMWEVATGYCVKT  227 (406)
Q Consensus       149 ~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-s~d~~i~iwd~~~~~~~~~  227 (406)
                      +..+|.+..+++ +|+.+ ....|+..++........+.+ .....+++|++.++.|+.. ...+.|..++...+.....
T Consensus        34 d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  110 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  110 (349)
T ss_dssp             TSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             CCCcccccccCc-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE
Confidence            334555655543 44433 334588888876554333333 3457899999876666554 4567899999876654333


Q ss_pred             eecCCccEEEEEECCC-CCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCE
Q psy226          228 LTGHREWVRQIKVSPD-GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPY  306 (406)
Q Consensus       228 ~~~~~~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (406)
                      +.........+++++. ++++++-...+.|.+.++........+.........+++.|.                 .+.+
T Consensus       111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~-----------------~g~l  173 (349)
T 3v64_C          111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM-----------------EGTI  173 (349)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETT-----------------TTEE
T ss_pred             EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecC-----------------cCeE
Confidence            3333344578899875 455566667789999998755433333333344566777663                 2344


Q ss_pred             EEEEeCC-CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCccceeeccccceEEEEEE
Q psy226          307 LATGSRD-KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSC-GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF  384 (406)
Q Consensus       307 l~s~~~d-~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sg-s~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~  384 (406)
                      +++-... +.|..+++........+...-.+...|+++|++..|+.+ +..+.|..+|+........+...-.....|++
T Consensus       174 y~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav  253 (349)
T 3v64_C          174 YWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV  253 (349)
T ss_dssp             EEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred             EEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence            4444444 678888875432222222234567899999876666544 45678999998643322222222334567777


Q ss_pred             eCCCCEEEEeeCCCeEEEee
Q psy226          385 HRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       385 ~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      . .+.+..+-...+.|..++
T Consensus       254 ~-~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          254 F-EDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             E-TTEEEEEETTTTEEEEEE
T ss_pred             E-CCEEEEecCCCCeEEEEE
Confidence            3 444555555566666554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.64  E-value=0.00026  Score=65.95  Aligned_cols=238  Identities=10%  Similarity=-0.005  Sum_probs=145.0

Q ss_pred             CCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe-CCCcEEEEeCCCC----eEEEEEecCCcceEEEEEecC
Q psy226          127 DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS-ADMSLKLWDMSTY----QCLKTMQGHDHNVTGVAFLPN  201 (406)
Q Consensus       127 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs-~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~p~  201 (406)
                      ...|+..|+.+......+. ....+..|+|++.+..|+.+. ..+.|..+++...    .....+........++++.+.
T Consensus        91 ~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~  169 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  169 (400)
T ss_dssp             TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT
T ss_pred             cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec
Confidence            4678888888776555443 345678999998666665554 5678888888652    222223323456788999985


Q ss_pred             CCEE-EEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe-C-CCeEEEEeCCCccceeEEecCCceEE
Q psy226          202 SDFV-LSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS-N-DHTARVWSLATKETKAELRGHDHTVE  278 (406)
Q Consensus       202 ~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~-d~~v~vwd~~~~~~~~~~~~~~~~v~  278 (406)
                      +..| ++-...+.|.+.++........+...-.....|+++|.+..|+... . .+.|...++............-....
T Consensus       170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~  249 (400)
T 3p5b_L          170 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  249 (400)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred             CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceE
Confidence            5544 4555678899999876554444444445678999999655554443 2 37888888865443333333334456


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe--CCCcCEEEEEEcCCCCEEEEEeCCC
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI--GHDNWVRGVTFHPGGKYLVSCGDDK  356 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~--~h~~~v~~l~~s~~g~~l~sgs~d~  356 (406)
                      .+++.|.                 .+.+.++-...+.|..+|+..........  +.-....++++. .+..+.+-...+
T Consensus       250 glavd~~-----------------~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~  311 (400)
T 3p5b_L          250 GITLDLL-----------------SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  311 (400)
T ss_dssp             EEEEETT-----------------TTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred             EEEEEeC-----------------CCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence            7777763                 23344444556789999986433222222  223456677773 344555666778


Q ss_pred             eEEEEeCCCCccceeeccccceEEEEE
Q psy226          357 TLRVWDTANKRNMKTLEAHSHFVTSLD  383 (406)
Q Consensus       357 ~i~vwd~~~~~~~~~l~~h~~~v~~l~  383 (406)
                      .|..+|..+++.+..+........++.
T Consensus       312 ~V~~~~~~~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          312 AIFSANRLTGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             SEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred             eEEEEEcCCCCceEEEecCCCCCceEE
Confidence            899999878877666653333334443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.63  E-value=5.8e-05  Score=65.24  Aligned_cols=201  Identities=9%  Similarity=0.144  Sum_probs=130.0

Q ss_pred             EecccccCeeeEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEec-CCcceEEEEEecCCCEEEEEeCCCcEEEEEcC
Q psy226          143 ALHGHLDSVQDIAFDQSGKLLV-SCSADMSLKLWDMSTYQCLKTMQG-HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA  220 (406)
Q Consensus       143 ~~~~h~~~V~~l~~~~~g~~l~-sgs~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~  220 (406)
                      .+.+-.+.+..++|+|++..|+ +...++.|...|.. ++.++.+.- -.....++++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4555556799999999876555 46678889999987 777777642 23567889999888777776677889898876


Q ss_pred             CCeE---EEEee------cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC---ccceeEEe-------cCCceEEEEE
Q psy226          221 TGYC---VKTLT------GHREWVRQIKVSPDGTLLASCSNDHTARVWSLAT---KETKAELR-------GHDHTVECVA  281 (406)
Q Consensus       221 ~~~~---~~~~~------~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~---~~~~~~~~-------~~~~~v~~~~  281 (406)
                      ....   +....      ..+.....++++|.++.|+++.......+|.+..   ......+.       .+......++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5432   22221      1233457999999997777776655555555531   11111111       1122345566


Q ss_pred             eCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC---------CcCEEEEEEcCCCCEEEEE
Q psy226          282 WAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH---------DNWVRGVTFHPGGKYLVSC  352 (406)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h---------~~~v~~l~~s~~g~~l~sg  352 (406)
                      +.|.                 .+.+++.....+.|..+|.. |+.+..+.-.         -...-.|+|+++|+..+ .
T Consensus       180 ~dp~-----------------tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-v  240 (255)
T 3qqz_A          180 FNQQ-----------------KNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-V  240 (255)
T ss_dssp             EETT-----------------TTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-E
T ss_pred             EcCC-----------------CCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-E
Confidence            6653                 46677777788889999975 5554433211         12568999999998544 4


Q ss_pred             eCCCeEEEEeC
Q psy226          353 GDDKTLRVWDT  363 (406)
Q Consensus       353 s~d~~i~vwd~  363 (406)
                      ++-+.++++..
T Consensus       241 sE~n~~y~f~~  251 (255)
T 3qqz_A          241 SEPNRFYRFTP  251 (255)
T ss_dssp             ETTTEEEEEEC
T ss_pred             cCCceEEEEEe
Confidence            77777877754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.62  E-value=3.6e-05  Score=72.51  Aligned_cols=244  Identities=12%  Similarity=0.146  Sum_probs=135.9

Q ss_pred             CeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC---Cc-EEEEeCCCC-
Q psy226          108 PVIKVIFHPV--FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD---MS-LKLWDMSTY-  180 (406)
Q Consensus       108 ~V~~v~~~p~--~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d---~~-i~vwd~~~~-  180 (406)
                      ....++++|+  ...|..+...+.|+.+|..++...... .......+++++++|+++++....   .. +...+.... 
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            3568999995  344444444489999999888765543 344568899999999944443321   11 333332211 


Q ss_pred             eEEEEEecCCcceEEEEEec-CCCEEEEEeCCCcEEEEEcCCCeEEEEe-e-cCCccEEEEEECCCCCE-EEEEeCCCeE
Q psy226          181 QCLKTMQGHDHNVTGVAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTL-T-GHREWVRQIKVSPDGTL-LASCSNDHTA  256 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~-~~~~~v~~l~~~~~~~~-l~s~~~d~~v  256 (406)
                      .....+. .-.....++++| ++.+.++-..++.|+.+|..++.....+ . +....-..++++|+|+. +++-...+.|
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            1011111 123345688999 6666556556788999998877652222 2 12233446999999984 4555567899


Q ss_pred             EEEeCCC--ccc--eeEEecC---------------CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEE
Q psy226          257 RVWSLAT--KET--KAELRGH---------------DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIK  317 (406)
Q Consensus       257 ~vwd~~~--~~~--~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  317 (406)
                      +.+++..  ...  ...+.+.               -.....+++.+...      .   ......+.+.++-...+.|+
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~------y---~~dd~~g~lyvaD~~n~~I~  368 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEA------Y---AGEEDEYDFYFCDRDSHTVR  368 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGG------G---TTSSCCEEEEEEETTTTEEE
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccc------c---cccCCCCcEEEEECCCCEEE
Confidence            9988652  211  1111111               00122233310000      0   00012345555555667888


Q ss_pred             EEECCCCeEEEEEeCC------------------CcCEEEEEEc-CCCCEEEEEeCCCeEEEEeCC
Q psy226          318 LWDVGSGSLLFTLIGH------------------DNWVRGVTFH-PGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       318 lwd~~~~~~~~~~~~h------------------~~~v~~l~~s-~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      .++. +|. +.++.+.                  -.....|+++ ++|.++++=..+++|+.++.+
T Consensus       369 ~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          369 VLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            8884 554 3343332                  1246788888 566666666667788877653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.56  E-value=0.00013  Score=67.75  Aligned_cols=233  Identities=11%  Similarity=0.039  Sum_probs=138.7

Q ss_pred             eeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEE-eCCCcEEEEEcCCCeEEEEee
Q psy226          151 VQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSA-SRDKTIKMWEVATGYCVKTLT  229 (406)
Q Consensus       151 V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~  229 (406)
                      -.|.+..+. .+|+.+ ....|+..++.+......+. ......+++|.+.++.|+.. ...+.|..++...+.....+.
T Consensus        79 ~~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  155 (386)
T 3v65_B           79 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  155 (386)
T ss_dssp             SCEEECSSC-CEEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred             CeECCcccc-ceeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence            345555553 344443 34568888887655433333 33457899999876655544 456789999987665444333


Q ss_pred             cCCccEEEEEECCC-CCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEE
Q psy226          230 GHREWVRQIKVSPD-GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLA  308 (406)
Q Consensus       230 ~~~~~v~~l~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  308 (406)
                      ........+++++. +.++++-...+.|.+.++........+.........++..|.                 .+.+++
T Consensus       156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~-----------------~g~ly~  218 (386)
T 3v65_B          156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM-----------------EGTIYW  218 (386)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETT-----------------TTEEEE
T ss_pred             CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcC-----------------CCeEEE
Confidence            33334567888875 455566666788999888654433333333344566776663                 233444


Q ss_pred             EEeCC-CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCccceeeccccceEEEEEEeC
Q psy226          309 TGSRD-KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSC-GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR  386 (406)
Q Consensus       309 s~~~d-~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sg-s~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~  386 (406)
                      +-... +.|..+++............-.+...|+|+|++..|+.+ +..+.|..+|+........+.........|++. 
T Consensus       219 td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-  297 (386)
T 3v65_B          219 TDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-  297 (386)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-
T ss_pred             eccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-
Confidence            44444 678888875433322233334568899999876666544 556889999986433322233223345677773 


Q ss_pred             CCCEEEEeeCCCeEEEee
Q psy226          387 AHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       387 ~~~~l~sgs~Dg~v~iw~  404 (406)
                      .+.+..+....+.|..++
T Consensus       298 ~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          298 EDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             TTEEEEEETTTTEEEEEE
T ss_pred             CCEEEEeeCCCCeEEEEE
Confidence            445556666667776665

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=6.2e-05  Score=70.91  Aligned_cols=234  Identities=12%  Similarity=0.152  Sum_probs=138.1

Q ss_pred             CeeeEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC-C----cEEEEEcCCCe
Q psy226          150 SVQDIAFDQ-SGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD-K----TIKMWEVATGY  223 (406)
Q Consensus       150 ~V~~l~~~~-~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d-~----~i~iwd~~~~~  223 (406)
                      ....|+++| ++..|+.+...+.|+.+|+.++... .+.........++|++++++|+.+... +    .+.+.+.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            356789998 4556666655588999999876543 333345567899999999966665542 2    23334432221


Q ss_pred             E-EEEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEeCCCccceeEEec-CCceEEEEEeCCCCCccccccccCCCCC
Q psy226          224 C-VKTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAELRG-HDHTVECVAWAPGVASESISEAAGRPPG  300 (406)
Q Consensus       224 ~-~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~  300 (406)
                      . ...+.. ......++++| +|.++++-..++.|..++............ .......++++|                
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p----------------  279 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP----------------  279 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT----------------
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC----------------
Confidence            1 122221 22346788999 777777777788999999876543222111 112345677776                


Q ss_pred             CCCCC-EEEEEeCCCcEEEEECCC--CeE--EEEEeCC---------------CcCEE-EEEEc--------CCCCEEEE
Q psy226          301 QGGGP-YLATGSRDKTIKLWDVGS--GSL--LFTLIGH---------------DNWVR-GVTFH--------PGGKYLVS  351 (406)
Q Consensus       301 ~~~~~-~l~s~~~d~~i~lwd~~~--~~~--~~~~~~h---------------~~~v~-~l~~s--------~~g~~l~s  351 (406)
                        .+. ++++-...+.|..++...  +..  +..+.+.               -.... .++..        ++|.+.++
T Consensus       280 --dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva  357 (430)
T 3tc9_A          280 --SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC  357 (430)
T ss_dssp             --TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE
T ss_pred             --CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE
Confidence              355 444445667888877542  222  1122211               11233 55553        44666666


Q ss_pred             EeCCCeEEEEeCCCCccceeeccc------------------cceEEEEEEeC-CCCEEEEeeCCCeEEEeec
Q psy226          352 CGDDKTLRVWDTANKRNMKTLEAH------------------SHFVTSLDFHR-AHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       352 gs~d~~i~vwd~~~~~~~~~l~~h------------------~~~v~~l~~~~-~~~~l~sgs~Dg~v~iw~~  405 (406)
                      =...+.|+.++. ++.. .++.+.                  -.....|+++| ++.++++-.....|+.++.
T Consensus       358 D~~n~~I~~i~~-~G~v-~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          358 DRENHCIRILTP-QGRV-TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EGGGTEEEEECT-TSEE-EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             ECCCcEEEEECC-CCcE-EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            667788999883 4432 222211                  11478999999 5667777777788887764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.50  E-value=1.9e-05  Score=78.83  Aligned_cols=239  Identities=13%  Similarity=0.116  Sum_probs=132.5

Q ss_pred             eEEECC-CCCEEEEEeCCC-----------cEEEEeCCCCeE--EEEEec-CCcceEEEEEecCCCEEEEEeC-CCcEEE
Q psy226          153 DIAFDQ-SGKLLVSCSADM-----------SLKLWDMSTYQC--LKTMQG-HDHNVTGVAFLPNSDFVLSASR-DKTIKM  216 (406)
Q Consensus       153 ~l~~~~-~g~~l~sgs~d~-----------~i~vwd~~~~~~--~~~~~~-h~~~v~~~~~~p~~~~l~s~s~-d~~i~i  216 (406)
                      ++++.+ +|++++.|+.+.           .+.+||..+++.  +..+.. +.....++++.+++.+++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556666 888888887543           588999876542  223322 2233445777889999999884 568999


Q ss_pred             EEcCCCeEEEEeecC-CccEEEEEECCCCCEEEEEe-CC-----CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCcc
Q psy226          217 WEVATGYCVKTLTGH-REWVRQIKVSPDGTLLASCS-ND-----HTARVWSLATKETKAELRGHDHTVECVAWAPGVASE  289 (406)
Q Consensus       217 wd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~-~d-----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  289 (406)
                      ||..+..-...-..+ ..+-.+++..++|++++.|+ .+     ..+.+||..+..-. .+....       ..|.....
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~-~~~~~~-------~~p~~~~~  341 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNAK-------VNPMLTAD  341 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTSC-------SGGGCCCC
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce-eCCCcc-------cccccccc
Confidence            999877543322111 12223456667999999988 44     56888998654311 110000       00000000


Q ss_pred             ccccccCCCCCCCCCCEEEEEeCC---------CcEEEEECCCCeEEEEEeCCC---------cCEEEEEEcC-CCCEEE
Q psy226          290 SISEAAGRPPGQGGGPYLATGSRD---------KTIKLWDVGSGSLLFTLIGHD---------NWVRGVTFHP-GGKYLV  350 (406)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~s~~~d---------~~i~lwd~~~~~~~~~~~~h~---------~~v~~l~~s~-~g~~l~  350 (406)
                      .. .     ....++..++.|+.+         ..+..||..+..-......+.         ..-.++.|.. +++.++
T Consensus       342 ~~-~-----~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v  415 (656)
T 1k3i_A          342 KQ-G-----LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT  415 (656)
T ss_dssp             TT-G-----GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred             cc-c-----eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEE
Confidence            00 0     000123334444433         356788887765433222121         1234555543 677888


Q ss_pred             EEeCCC-----------eEEEEeCCCCccceee--ccccc-eEEEEEEeCCCCEEEEeeCC-----------CeEEEeec
Q psy226          351 SCGDDK-----------TLRVWDTANKRNMKTL--EAHSH-FVTSLDFHRAHPYVVTGSVD-----------KTVKVWEC  405 (406)
Q Consensus       351 sgs~d~-----------~i~vwd~~~~~~~~~l--~~h~~-~v~~l~~~~~~~~l~sgs~D-----------g~v~iw~~  405 (406)
                      .|+.++           .|.+||..+..-....  ..... .-.+++..|++++++.||.+           ..+.+||.
T Consensus       416 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp  495 (656)
T 1k3i_A          416 FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP  495 (656)
T ss_dssp             ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEG
T ss_pred             EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcC
Confidence            887543           6888887765432221  11111 12244566899999999865           45788874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.48  E-value=0.00018  Score=64.67  Aligned_cols=228  Identities=9%  Similarity=0.019  Sum_probs=135.4

Q ss_pred             CCcEEEEEcCCCc--EEEEecccccCeeeEEECCCCCEEE-EEeCCCcEEEEeCCCCeEE-EEEecCCcceEEEEEecCC
Q psy226          127 DATIRLWDYETGE--YERALHGHLDSVQDIAFDQSGKLLV-SCSADMSLKLWDMSTYQCL-KTMQGHDHNVTGVAFLPNS  202 (406)
Q Consensus       127 dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~g~~l~-sgs~d~~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~p~~  202 (406)
                      ...|+..|+.+..  ....+. ....+.+++|++.+..|+ +-...+.|..+++...... ..+...-....++++.+.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            3567888887653  222222 223566899998655554 4455678999988765311 1222222346678998755


Q ss_pred             CEE-EEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe--CCCeEEEEeCCCccceeEEecCCceEEE
Q psy226          203 DFV-LSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS--NDHTARVWSLATKETKAELRGHDHTVEC  279 (406)
Q Consensus       203 ~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~  279 (406)
                      ..| ++-...+.|.++++........+.........++++|.+..|+.+.  ..+.|...++............-.....
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png  170 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG  170 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence            544 4545667899999865433333334445678999998655554444  3578888887643322222222234567


Q ss_pred             EEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEE
Q psy226          280 VAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR  359 (406)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~  359 (406)
                      ++++|.                 ++.+.++-+..+.|..+|+........+.+......++++.. +..+.+-...+.|.
T Consensus       171 lavd~~-----------------~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~  232 (318)
T 3sov_A          171 LTLDYE-----------------EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSIL  232 (318)
T ss_dssp             EEEETT-----------------TTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred             EEEecc-----------------CCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEE
Confidence            777763                 234444555667899998864332222233345567788763 34555666778999


Q ss_pred             EEeCCCCccceeec
Q psy226          360 VWDTANKRNMKTLE  373 (406)
Q Consensus       360 vwd~~~~~~~~~l~  373 (406)
                      .+|..+++....+.
T Consensus       233 ~~~~~~G~~~~~i~  246 (318)
T 3sov_A          233 ACNKYTGEGLREIH  246 (318)
T ss_dssp             EEETTTCCSCEEEE
T ss_pred             EEECCCCCceEEEe
Confidence            99987776655543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.48  E-value=0.0002  Score=67.89  Aligned_cols=254  Identities=13%  Similarity=0.156  Sum_probs=143.1

Q ss_pred             CeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCcEEEEeccc---ccCeeeEEE-------CCCCCEEEEEeCCC-----
Q psy226          108 PVIKVIFHPV--FSLMASCSEDATIRLWDYETGEYERALHGH---LDSVQDIAF-------DQSGKLLVSCSADM-----  170 (406)
Q Consensus       108 ~V~~v~~~p~--~~~latgs~dg~v~vwd~~~~~~~~~~~~h---~~~V~~l~~-------~~~g~~l~sgs~d~-----  170 (406)
                      ....|+|.|.  +.++++-...+.|++.|..++.+...+...   ......|+|       +++|+.|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4568999984  455555555578999999988776655432   235788999       99999776665543     


Q ss_pred             --cEEEEeCCC-CeEE-----EEEecCCcceEEEEEecCCC-EEEEEeCCCcEEEEEcC-------CCeE----------
Q psy226          171 --SLKLWDMST-YQCL-----KTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVA-------TGYC----------  224 (406)
Q Consensus       171 --~i~vwd~~~-~~~~-----~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~iwd~~-------~~~~----------  224 (406)
                        .|.+.+... +...     ..+.... ...+++++|++. ++++-..++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              255665333 1111     1222222 334678899554 55556677889999987       5543          


Q ss_pred             -EEE-e-ecCCccEEEEEECCCCCE-EEEEeCCCeEEEEeCCCcc--c--eeEEecCCceEEEEEeCCCCCccccccccC
Q psy226          225 -VKT-L-TGHREWVRQIKVSPDGTL-LASCSNDHTARVWSLATKE--T--KAELRGHDHTVECVAWAPGVASESISEAAG  296 (406)
Q Consensus       225 -~~~-~-~~~~~~v~~l~~~~~~~~-l~s~~~d~~v~vwd~~~~~--~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  296 (406)
                       ... + .+...+...++|+|+|+. .++=+..+.|+.++.....  .  ...+.+....   -.+..+   ........
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~---~G~~DG---~~~~a~f~  372 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQ---SGYRDD---VGTEARMN  372 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTB---CCCBCC---BGGGCBCS
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCC---CcccCC---cccccccC
Confidence             112 1 123345678999999995 4555567889887654321  1  0112111000   000000   00000000


Q ss_pred             CCC----C-------CCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC------------------------CcCEEEEE
Q psy226          297 RPP----G-------QGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH------------------------DNWVRGVT  341 (406)
Q Consensus       297 ~~~----~-------~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h------------------------~~~v~~l~  341 (406)
                      .|.    .       ...+.+.++=.....||.++ .+|. +.++.+.                        -.....|+
T Consensus       373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa  450 (496)
T 3kya_A          373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV  450 (496)
T ss_dssp             SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred             CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence            000    0       02345555556677888888 4564 3344322                        12467899


Q ss_pred             EcCC-CCEEEEEeCCCeEEEEeCCCCccce
Q psy226          342 FHPG-GKYLVSCGDDKTLRVWDTANKRNMK  370 (406)
Q Consensus       342 ~s~~-g~~l~sgs~d~~i~vwd~~~~~~~~  370 (406)
                      ++++ |.++++=..+.+||.+++.....+.
T Consensus       451 vd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          451 YDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             EECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence            9996 7776766678899999887655443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.47  E-value=0.00035  Score=60.37  Aligned_cols=182  Identities=12%  Similarity=0.174  Sum_probs=117.5

Q ss_pred             EeccCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          101 ALSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~-~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      .+.|-...+..++++|++. ++++...++.|...|.. ++..+.+. +-......|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3567777899999999866 55567788999999998 88777764 222567788999888877776677888888876


Q ss_pred             CCe---EEEEEe------cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcC---CCeEEEEee-------cCCccEEEEE
Q psy226          179 TYQ---CLKTMQ------GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA---TGYCVKTLT-------GHREWVRQIK  239 (406)
Q Consensus       179 ~~~---~~~~~~------~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~---~~~~~~~~~-------~~~~~v~~l~  239 (406)
                      ...   .+....      ..+....+++|+|.++.|+++.......+|.+.   ....+..+.       .+...+..++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            433   122221      134457899999999877776665555555553   111122221       1223467899


Q ss_pred             ECCCCCEE-EEEeCCCeEEEEeCCCccceeEEecC---------CceEEEEEeCC
Q psy226          240 VSPDGTLL-ASCSNDHTARVWSLATKETKAELRGH---------DHTVECVAWAP  284 (406)
Q Consensus       240 ~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~---------~~~v~~~~~~~  284 (406)
                      ++|....+ +....++.+.++|.... .+..+.-.         -...+.+++.|
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~  233 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDA  233 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECC
Confidence            99965554 55556778888887543 44333221         12457777776

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.47  E-value=0.00019  Score=67.62  Aligned_cols=234  Identities=16%  Similarity=0.185  Sum_probs=139.9

Q ss_pred             CeeeEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC---Cc-EEEEEcCCCe
Q psy226          150 SVQDIAFDQS--GKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD---KT-IKMWEVATGY  223 (406)
Q Consensus       150 ~V~~l~~~~~--g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d---~~-i~iwd~~~~~  223 (406)
                      ....|+|+|+  +..|+.+...+.|+.+|..+++.. .+........+++++++++++++....   .. +...+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            3568999984  445555554488999999877654 444445568899999999944443311   11 3333332221


Q ss_pred             EE-EEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEeCCCccceeEE-ecC-CceEEEEEeCCCCCccccccccCCCC
Q psy226          224 CV-KTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLATKETKAEL-RGH-DHTVECVAWAPGVASESISEAAGRPP  299 (406)
Q Consensus       224 ~~-~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~  299 (406)
                      .. ..+. .-.....++++| +|.++++-..++.|+.+|..++.....+ ... ......++++|               
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp---------------  282 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP---------------  282 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT---------------
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC---------------
Confidence            10 1111 123345688999 7777777667889999998755442222 111 11123466666               


Q ss_pred             CCCCCC-EEEEEeCCCcEEEEECC--CCeE--EEEEeCC---------------CcCEEEEEE---------cCCCCEEE
Q psy226          300 GQGGGP-YLATGSRDKTIKLWDVG--SGSL--LFTLIGH---------------DNWVRGVTF---------HPGGKYLV  350 (406)
Q Consensus       300 ~~~~~~-~l~s~~~d~~i~lwd~~--~~~~--~~~~~~h---------------~~~v~~l~~---------s~~g~~l~  350 (406)
                         .+. +.++-...+.|+.++..  ++..  ...+.+.               -.....+++         .++|.+.+
T Consensus       283 ---dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyv  359 (433)
T 4hw6_A          283 ---TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYF  359 (433)
T ss_dssp             ---TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEE
T ss_pred             ---CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEE
Confidence               355 44444556788887754  2321  1122221               124677999         78888878


Q ss_pred             EEeCCCeEEEEeCCCCccceeeccc------------------cceEEEEEEe-CCCCEEEEeeCCCeEEEeec
Q psy226          351 SCGDDKTLRVWDTANKRNMKTLEAH------------------SHFVTSLDFH-RAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       351 sgs~d~~i~vwd~~~~~~~~~l~~h------------------~~~v~~l~~~-~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +-...+.|+.++. ++. +.++.+.                  -.....|+++ +++.++++-...+.|+.++.
T Consensus       360 aD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          360 CDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             EETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            7778889999985 443 2222211                  1236789999 67777777777888888764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.45  E-value=0.00082  Score=62.53  Aligned_cols=216  Identities=12%  Similarity=0.004  Sum_probs=130.4

Q ss_pred             CCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC----cEEEEecccccCeeeEEECCCCCEE-EEEeCCCcEEEEeCCC
Q psy226          106 RSPVIKVIFHPVFS-LMASCSEDATIRLWDYETG----EYERALHGHLDSVQDIAFDQSGKLL-VSCSADMSLKLWDMST  179 (406)
Q Consensus       106 ~~~V~~v~~~p~~~-~latgs~dg~v~vwd~~~~----~~~~~~~~h~~~V~~l~~~~~g~~l-~sgs~d~~i~vwd~~~  179 (406)
                      ...+..++|++... ++.+-...+.|+.++....    .....+.........|++.+.+..| ++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            45678899998655 4445556788888887652    2333343344567889998754444 4545678899999876


Q ss_pred             CeEEEEEecCCcceEEEEEecCCCEEEEEeC--CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEE-eCCCeE
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASR--DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASC-SNDHTA  256 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~~v  256 (406)
                      ......+...-....++++.|.+..|+....  .+.|...++............-.+.+.|++++++..|..+ ...+.|
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I  270 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  270 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEE
Confidence            5443333334445789999997776665543  3678888876443333333444678899999876666554 456889


Q ss_pred             EEEeCCCccceeEEec--CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy226          257 RVWSLATKETKAELRG--HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD  334 (406)
Q Consensus       257 ~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~  334 (406)
                      ..+|+...........  .......++..                   .+.++++-...+.|..+|..+|+.+..+....
T Consensus       271 ~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-------------------~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~  331 (400)
T 3p5b_L          271 SSIDVNGGNRKTILEDEKRLAHPFSLAVF-------------------EDKVFWTDIINEAIFSANRLTGSDVNLLAENL  331 (400)
T ss_dssp             EEEETTSCCCEEEEECSSTTSSEEEEEEE-------------------TTEEEEEESSSCSEEEEESSSCCCCEEEECSC
T ss_pred             EEEeCCCCccEEEEeCCCCCCCCEEEEEe-------------------CCEEEEecCCCCeEEEEEcCCCCceEEEecCC
Confidence            9999865433322221  11112233321                   23455555666778888877776655554433


Q ss_pred             cCEEEE
Q psy226          335 NWVRGV  340 (406)
Q Consensus       335 ~~v~~l  340 (406)
                      ....++
T Consensus       332 ~~p~~i  337 (400)
T 3p5b_L          332 LSPEDM  337 (400)
T ss_dssp             SCEEEE
T ss_pred             CCCceE
Confidence            334444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.44  E-value=0.00082  Score=60.36  Aligned_cols=220  Identities=13%  Similarity=0.048  Sum_probs=129.7

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEE-eCCCcEEEEEcCC----CeEEEEeecCCccEEE
Q psy226          163 LVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSA-SRDKTIKMWEVAT----GYCVKTLTGHREWVRQ  237 (406)
Q Consensus       163 l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-s~d~~i~iwd~~~----~~~~~~~~~~~~~v~~  237 (406)
                      |+.+. ...|+..|+.+.+....+. ......+++|++.++.|+.+ ...+.|..+++..    ......+...-.....
T Consensus         4 ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            44433 3568889988765544443 34567899999876655554 4568899999875    2222223222234578


Q ss_pred             EEECCCC-CEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC-Cc
Q psy226          238 IKVSPDG-TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD-KT  315 (406)
Q Consensus       238 l~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~  315 (406)
                      +++++.+ ++.++-...+.|.++++........+.........++..|.                 ++.++++.... +.
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-----------------~g~ly~~d~~~~~~  144 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-----------------HGFMYWTDWGTPAK  144 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-----------------TTEEEEEECSSSCE
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-----------------CCEEEEEccCCCCe
Confidence            8998754 55566667889999998754333333322334566666652                 23334443333 67


Q ss_pred             EEEEECCCCeEEEEE-eCCCcCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCccceeecc---ccceEEEEEEeCCCCE
Q psy226          316 IKLWDVGSGSLLFTL-IGHDNWVRGVTFHPGGKYLVSC-GDDKTLRVWDTANKRNMKTLEA---HSHFVTSLDFHRAHPY  390 (406)
Q Consensus       316 i~lwd~~~~~~~~~~-~~h~~~v~~l~~s~~g~~l~sg-s~d~~i~vwd~~~~~~~~~l~~---h~~~v~~l~~~~~~~~  390 (406)
                      |...++.. .....+ ...-.+...++++|++..|+.+ +..+.|..+|+.. ...+.+..   .-.....|++.. +.+
T Consensus       145 I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~~-~~l  221 (316)
T 1ijq_A          145 IKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFE-DKV  221 (316)
T ss_dssp             EEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEET-TEE
T ss_pred             EEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEEC-CEE
Confidence            88888743 322333 2334578899999987666554 4567999999864 33333321   122356777753 555


Q ss_pred             EEEeeCCCeEEEee
Q psy226          391 VVTGSVDKTVKVWE  404 (406)
Q Consensus       391 l~sgs~Dg~v~iw~  404 (406)
                      .++-...+.|..++
T Consensus       222 y~~d~~~~~V~~~~  235 (316)
T 1ijq_A          222 FWTDIINEAIFSAN  235 (316)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEECCCCeEEEEe
Confidence            56666667777665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.42  E-value=1.3e-05  Score=81.22  Aligned_cols=190  Identities=17%  Similarity=0.215  Sum_probs=111.8

Q ss_pred             ceEEEEEe-cCCCEEEEEeC-CC----cEEEEEcCCC-eEEE-EeecCCccEEEEEECCCCCEEEEEeCC-----CeEEE
Q psy226          192 NVTGVAFL-PNSDFVLSASR-DK----TIKMWEVATG-YCVK-TLTGHREWVRQIKVSPDGTLLASCSND-----HTARV  258 (406)
Q Consensus       192 ~v~~~~~~-p~~~~l~s~s~-d~----~i~iwd~~~~-~~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~d-----~~v~v  258 (406)
                      .+...+|+ |||++|+.+.. +|    +|+++|+.++ ..+. .+.   .....++|+|||+.|+....|     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57788999 99998775433 32    5999999988 5321 111   113467899999888777665     35788


Q ss_pred             EeCCCccce--eEEe-cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC---CCcEEEEECCCC--eE-EEE
Q psy226          259 WSLATKETK--AELR-GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR---DKTIKLWDVGSG--SL-LFT  329 (406)
Q Consensus       259 wd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~i~lwd~~~~--~~-~~~  329 (406)
                      +++.+....  ..+. ........+.|+|                  +|.+|+..+.   ...|.++|+.++  .. +..
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp------------------Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~  313 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAA------------------DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI  313 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECT------------------TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECC------------------CCCEEEEEecCCCCceEEEEECCCCCCCceeEE
Confidence            888765422  2222 2223345677877                  3666665542   346888998775  22 133


Q ss_pred             Ee-CCCcCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCcccee-eccccc--eEEEEEEeCCCCEEEEeeCCCeEE
Q psy226          330 LI-GHDNWVRGVTFHPGGKYLVSCGDD----KTLRVWDTANKRNMKT-LEAHSH--FVTSLDFHRAHPYVVTGSVDKTVK  401 (406)
Q Consensus       330 ~~-~h~~~v~~l~~s~~g~~l~sgs~d----~~i~vwd~~~~~~~~~-l~~h~~--~v~~l~~~~~~~~l~sgs~Dg~v~  401 (406)
                      +. .......++.|+.++.+++....+    ..|..+|+.++..... +-.+..  .+..+++. .+.++++...||..+
T Consensus       314 l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~  392 (751)
T 2xe4_A          314 VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTR  392 (751)
T ss_dssp             SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEE
T ss_pred             eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEE
Confidence            32 334455566655544455554443    3677778765323333 333332  45666665 334567777888765


Q ss_pred             Ee
Q psy226          402 VW  403 (406)
Q Consensus       402 iw  403 (406)
                      +|
T Consensus       393 l~  394 (751)
T 2xe4_A          393 IW  394 (751)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.38  E-value=0.00031  Score=63.20  Aligned_cols=204  Identities=13%  Similarity=0.033  Sum_probs=121.8

Q ss_pred             CeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCcE-EEEecccccCeeeEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEE
Q psy226          108 PVIKVIFHPV-FSLMASCSEDATIRLWDYETGEY-ERALHGHLDSVQDIAFDQSGKLL-VSCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       108 ~V~~v~~~p~-~~~latgs~dg~v~vwd~~~~~~-~~~~~~h~~~V~~l~~~~~g~~l-~sgs~d~~i~vwd~~~~~~~~  184 (406)
                      .+.+++|++. +.++.+-...+.|..++..++.. ...+.........+++.+.+..| ++-...+.|.++++.......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            4668899985 45556666778899999877632 22222233456789998755544 454566789999987543222


Q ss_pred             EEecCCcceEEEEEecCCCEEEEEeC--CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEE-EEEeCCCeEEEEeC
Q psy226          185 TMQGHDHNVTGVAFLPNSDFVLSASR--DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLL-ASCSNDHTARVWSL  261 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~d~~v~vwd~  261 (406)
                      .+........++++.|.+..|+.+..  .+.|...+.............-...+.|+++|++..| ++=+..+.|..+|+
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            22233455789999997776666553  4678877775332222223334567899999866555 45456788999998


Q ss_pred             CCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q psy226          262 ATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL  330 (406)
Q Consensus       262 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~  330 (406)
                      ..........+.......++..                   .+.++.+-...+.|..+|..+|+....+
T Consensus       196 dG~~~~~~~~~~~~~P~glav~-------------------~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          196 DGTNRQAVVKGSLPHPFALTLF-------------------EDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             TSCSCEEEECSCCSCEEEEEEE-------------------TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCceEEEecCCCCCceEEEEe-------------------CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            6533322222122222333332                   1334455555667777787666544443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.33  E-value=0.0012  Score=66.86  Aligned_cols=228  Identities=11%  Similarity=0.008  Sum_probs=136.0

Q ss_pred             CCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEE-EEeCCCcEEEEeCCCC----eEEEEEecCCcceEEEEEecC
Q psy226          127 DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV-SCSADMSLKLWDMSTY----QCLKTMQGHDHNVTGVAFLPN  201 (406)
Q Consensus       127 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~-sgs~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~p~  201 (406)
                      ...|+..++....+...+. ....+.+|+|++.+..|+ +-...+.|+.+++...    .....+........+|++.+.
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            4567777777666554444 345677899998655554 4445678888888642    122223323445678999987


Q ss_pred             CCEEE-EEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe-CC-CeEEEEeCCCccceeEEecCCceEE
Q psy226          202 SDFVL-SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS-ND-HTARVWSLATKETKAELRGHDHTVE  278 (406)
Q Consensus       202 ~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d-~~v~vwd~~~~~~~~~~~~~~~~v~  278 (406)
                      ++.|+ +-...+.|.+.++........+.........|+++|.+..|+... .. +.|.+.++........+........
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~  561 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  561 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCce
Confidence            76555 445578899999876554444444445678999999755544443 33 7888888865444333333334456


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC--CCcCEEEEEEcCCCCEEEEEeCCC
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG--HDNWVRGVTFHPGGKYLVSCGDDK  356 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~--h~~~v~~l~~s~~g~~l~sgs~d~  356 (406)
                      .+++.+.                 .+.+.++-...+.|...++........+..  .-....+|++.. +..+++-...+
T Consensus       562 GLavD~~-----------------~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~  623 (791)
T 3m0c_C          562 GITLDLL-----------------SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE  623 (791)
T ss_dssp             EEEEETT-----------------TTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred             EEEEecC-----------------CCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence            6666652                 233444444556788888854433323332  223455677643 33444555678


Q ss_pred             eEEEEeCCCCccceeec
Q psy226          357 TLRVWDTANKRNMKTLE  373 (406)
Q Consensus       357 ~i~vwd~~~~~~~~~l~  373 (406)
                      .|...|..+++.+..+.
T Consensus       624 ~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          624 AIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EEEEEETTTCCCCEEEE
T ss_pred             EEEEEeCCCCcceEEee
Confidence            88888887776665553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.27  E-value=0.0038  Score=61.46  Aligned_cols=297  Identities=11%  Similarity=0.039  Sum_probs=161.9

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeC--CCcEEEEeCCCCeEE
Q psy226          107 SPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSA--DMSLKLWDMSTYQCL  183 (406)
Q Consensus       107 ~~V~~v~~~p~~~-~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~--d~~i~vwd~~~~~~~  183 (406)
                      .....+++.+.+. ++++-...+.|.+.+.........+........+|+++|.+..|+....  .+.|...++......
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF  163 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence            4577899998654 5556667889999998765544444345566789999997666655543  356666676543222


Q ss_pred             EEEecCCcceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy226          184 KTMQGHDHNVTGVAFLPNSDFVLSAS-RDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLA  262 (406)
Q Consensus       184 ~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~  262 (406)
                      ......-....++++.++++.|+.+. ..+.|...|+..........+.......+++..+ .++++-...+.|...|..
T Consensus       164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~  242 (619)
T 3s94_A          164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKY  242 (619)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred             EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence            22222334568999999777666554 4567888888654332222212222345677655 555565567889999987


Q ss_pred             CccceeEEecCCceEEEEE-eCCC----CCcc---------ccccccC--------CCCC-----------CCCCCEEEE
Q psy226          263 TKETKAELRGHDHTVECVA-WAPG----VASE---------SISEAAG--------RPPG-----------QGGGPYLAT  309 (406)
Q Consensus       263 ~~~~~~~~~~~~~~v~~~~-~~~~----~~~~---------~~~~~~~--------~~~~-----------~~~~~~l~s  309 (406)
                      +++....+.........++ ++|.    ....         .++....        .+.+           .....+|+.
T Consensus       243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~  322 (619)
T 3s94_A          243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL  322 (619)
T ss_dssp             SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE
T ss_pred             CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE
Confidence            7655444332221112222 2221    0000         0000000        0000           011234554


Q ss_pred             EeCCCcEEEEECCCCeEE-EEEe-CCCcCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCccceeeccccceEEEEEEeC
Q psy226          310 GSRDKTIKLWDVGSGSLL-FTLI-GHDNWVRGVTFHPGGKYLVSC-GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR  386 (406)
Q Consensus       310 ~~~d~~i~lwd~~~~~~~-~~~~-~h~~~v~~l~~s~~g~~l~sg-s~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~  386 (406)
                      +. .+.|+..++...... ..+. ..-..+.+++|++.+..|+.+ ...+.|+.++.........+...-.....|++++
T Consensus       323 ~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~  401 (619)
T 3s94_A          323 AR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDW  401 (619)
T ss_dssp             EE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEET
T ss_pred             Ec-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEec
Confidence            44 456777777654211 1111 122457889999866555544 4578999999875433222332223466888886


Q ss_pred             CCC-EEEEeeCCCeEEEeec
Q psy226          387 AHP-YVVTGSVDKTVKVWEC  405 (406)
Q Consensus       387 ~~~-~l~sgs~Dg~v~iw~~  405 (406)
                      .+. +..+-+..+.|.+.++
T Consensus       402 ~~~~lY~tD~~~~~I~v~~~  421 (619)
T 3s94_A          402 VARNLYWTDTGTDRIEVTRL  421 (619)
T ss_dssp             TTTEEEEEETTTTEEEEEET
T ss_pred             ccCcEEEEeCCCCcEEEEeC
Confidence            444 4455556667776653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.20  E-value=0.002  Score=65.14  Aligned_cols=163  Identities=12%  Similarity=0.043  Sum_probs=104.7

Q ss_pred             CCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCC----cEEEEecccccCeeeEEECCCCCEEEE-EeCCCcEEEEeCCC
Q psy226          106 RSPVIKVIFHPVFS-LMASCSEDATIRLWDYETG----EYERALHGHLDSVQDIAFDQSGKLLVS-CSADMSLKLWDMST  179 (406)
Q Consensus       106 ~~~V~~v~~~p~~~-~latgs~dg~v~vwd~~~~----~~~~~~~~h~~~V~~l~~~~~g~~l~s-gs~d~~i~vwd~~~  179 (406)
                      ...+..++|++... ++++-...+.|+.+++...    .....+.........|++.+.+..|+. -...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            34567889988544 5556566778888887753    223334434556778999887765554 45568899999875


Q ss_pred             CeEEEEEecCCcceEEEEEecCCCEEEEEeC--CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEE-eCCCeE
Q psy226          180 YQCLKTMQGHDHNVTGVAFLPNSDFVLSASR--DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASC-SNDHTA  256 (406)
Q Consensus       180 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~~v  256 (406)
                      ......+...-....+|++.|.+.+|+....  .+.|...++........+...-.+.+.|++++.+..|+.+ ...+.|
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I  582 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  582 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence            5433333334456789999998776666543  2678888876544433444444678899999766555444 456789


Q ss_pred             EEEeCCCcccee
Q psy226          257 RVWSLATKETKA  268 (406)
Q Consensus       257 ~vwd~~~~~~~~  268 (406)
                      ..+++.......
T Consensus       583 ~~~d~dG~~~~~  594 (791)
T 3m0c_C          583 SSIDVNGGNRKT  594 (791)
T ss_dssp             EEEETTSCSCEE
T ss_pred             EEEecCCCceEE
Confidence            999986544433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.16  E-value=0.0057  Score=60.33  Aligned_cols=227  Identities=9%  Similarity=-0.038  Sum_probs=136.8

Q ss_pred             CCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCC
Q psy226          126 EDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLLVSC-SADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSD  203 (406)
Q Consensus       126 ~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g~~l~sg-s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~  203 (406)
                      ....|+..|+.+......+. .....+..|+|++.+..|+.+ ..++.|..+++........+........++++.+.++
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            44677888887665444333 233567899999876666554 4578899998875433333332224567899987766


Q ss_pred             EEEE-EeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe--CCCeEEEEeCCCccceeEEecCCceEEEE
Q psy226          204 FVLS-ASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS--NDHTARVWSLATKETKAELRGHDHTVECV  280 (406)
Q Consensus       204 ~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~  280 (406)
                      .|+. -...+.|.+.++........+...-...+.|+++|....|.-..  ..+.|...++......... ........+
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~Gl  171 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGL  171 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEE
T ss_pred             EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceE
Confidence            5544 44567889998865443333334445578999998544444433  3567877877654433222 223344566


Q ss_pred             EeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy226          281 AWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRV  360 (406)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~v  360 (406)
                      ++.+.                 .+.+.++-...+.|..+|+..... ..+........++++.. +..+++-...+.|..
T Consensus       172 alD~~-----------------~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~  232 (628)
T 4a0p_A          172 TIDYA-----------------KRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIER  232 (628)
T ss_dssp             EEETT-----------------TTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             EEccc-----------------cCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEE
Confidence            66652                 233444445567888888865433 22333334466788765 444455556789999


Q ss_pred             EeCCCCccceee
Q psy226          361 WDTANKRNMKTL  372 (406)
Q Consensus       361 wd~~~~~~~~~l  372 (406)
                      .|..+++....+
T Consensus       233 ~dk~tg~~~~~l  244 (628)
T 4a0p_A          233 ANKTSGQNRTII  244 (628)
T ss_dssp             EETTTCCSCEEE
T ss_pred             EECCCCCceEEE
Confidence            998777655444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.12  E-value=0.00087  Score=60.21  Aligned_cols=193  Identities=11%  Similarity=0.242  Sum_probs=121.9

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECC----CCCE--EEEEe--C--CCcEEEEeC--CCCeEEE
Q psy226          117 VFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQ----SGKL--LVSCS--A--DMSLKLWDM--STYQCLK  184 (406)
Q Consensus       117 ~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~----~g~~--l~sgs--~--d~~i~vwd~--~~~~~~~  184 (406)
                      ..+++++....+-+.+||+ +|+.+..+..  +.++.+..-|    .|+.  ++.++  .  +.+|.+|++  .+.+ +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            3456777778889999999 7888877764  4566665544    2322  33333  3  578999966  3433 44


Q ss_pred             EEec------CC-cceEEEEE--ecC-CC-EEEEEeCCCcEEEEEcC-------CCeEEEEeecCCccEEEEEECCCCCE
Q psy226          185 TMQG------HD-HNVTGVAF--LPN-SD-FVLSASRDKTIKMWEVA-------TGYCVKTLTGHREWVRQIKVSPDGTL  246 (406)
Q Consensus       185 ~~~~------h~-~~v~~~~~--~p~-~~-~l~s~s~d~~i~iwd~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~  246 (406)
                      .+..      .. ..+..+++  +|. +. ++++...+|.+..|++.       +++.++++... ..+..+..++....
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~  193 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGR  193 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCe
Confidence            4421      11 45667777  664 43 68888889999999982       33556676654 45778888998889


Q ss_pred             EEEEeCCCeEEEEeCCC-----ccceeEEe-cC-CceEEEEEeCCCCCccccccccCCCCCCCCCC-EEEEEe-CCCcEE
Q psy226          247 LASCSNDHTARVWSLAT-----KETKAELR-GH-DHTVECVAWAPGVASESISEAAGRPPGQGGGP-YLATGS-RDKTIK  317 (406)
Q Consensus       247 l~s~~~d~~v~vwd~~~-----~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~-~d~~i~  317 (406)
                      |+.+-.|..|..++.+.     ...+..+. ++ ...++.++..+..                ++. ||++++ .+++..
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~----------------~g~gyLivSsQG~~s~~  257 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAA----------------DGKGYLMASSQGNSSYA  257 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECG----------------GGCEEEEEEEGGGTEEE
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecC----------------CCCEEEEEEcCCCCEEE
Confidence            99999997766666442     22222221 11 1356666654321                122 455555 677999


Q ss_pred             EEECC-CCeEEEEE
Q psy226          318 LWDVG-SGSLLFTL  330 (406)
Q Consensus       318 lwd~~-~~~~~~~~  330 (406)
                      +||.. +.+.+..|
T Consensus       258 Vydr~~~~~~vg~f  271 (355)
T 3amr_A          258 IYDRQGKNKYVADF  271 (355)
T ss_dssp             EEESSTTCCEEEEE
T ss_pred             EEECCCCCcEEEEE
Confidence            99996 56666665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.10  E-value=0.0021  Score=57.77  Aligned_cols=190  Identities=14%  Similarity=0.258  Sum_probs=119.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecC----CC---EEEEEeC---CCcEEEEEc--CCCeEEEE
Q psy226          160 GKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPN----SD---FVLSASR---DKTIKMWEV--ATGYCVKT  227 (406)
Q Consensus       160 g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~----~~---~l~s~s~---d~~i~iwd~--~~~~~~~~  227 (406)
                      ..+++.....+-+.+||+ +++.++.+..  ..+..+..-|+    ++   ++++..+   +++|.+|++  .++. +..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            345666667788999999 7888888754  45666666663    22   2333333   578999977  3433 444


Q ss_pred             eec------CC-ccEEEEEE--CCC-CC-EEEEEeCCCeEEEEeCCC-------ccceeEEecCCceEEEEEeCCCCCcc
Q psy226          228 LTG------HR-EWVRQIKV--SPD-GT-LLASCSNDHTARVWSLAT-------KETKAELRGHDHTVECVAWAPGVASE  289 (406)
Q Consensus       228 ~~~------~~-~~v~~l~~--~~~-~~-~l~s~~~d~~v~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~  289 (406)
                      +..      .. ..+..+++  +|. +. +++....+|.+..|++..       .+.+..+... ..++.++..+     
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd-----  189 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADD-----  189 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEET-----
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcC-----
Confidence            421      11 45566777  774 43 577788889999998832       2233444332 3455555544     


Q ss_pred             ccccccCCCCCCCCCCEEEEEeCCCcEEEEECC-----CCeEEEEEe-CC-CcCEEEEEE--cCCCC-EEEEEe-CCCeE
Q psy226          290 SISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG-----SGSLLFTLI-GH-DNWVRGVTF--HPGGK-YLVSCG-DDKTL  358 (406)
Q Consensus       290 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~-----~~~~~~~~~-~h-~~~v~~l~~--s~~g~-~l~sgs-~d~~i  358 (406)
                                   ....|+.+-++.-|..+|..     +++.+..+. ++ ...+..|++  .++|+ ||++.+ .+.+.
T Consensus       190 -------------~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~  256 (355)
T 3amr_A          190 -------------EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY  256 (355)
T ss_dssp             -------------TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred             -------------CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence                         24578888888777777754     345555542 22 235888888  55555 666655 67799


Q ss_pred             EEEeCC-CCccceee
Q psy226          359 RVWDTA-NKRNMKTL  372 (406)
Q Consensus       359 ~vwd~~-~~~~~~~l  372 (406)
                      .|||.. +.+.+..+
T Consensus       257 ~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          257 AIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEEESSTTCCEEEEE
T ss_pred             EEEECCCCCcEEEEE
Confidence            999996 55555555

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.09  E-value=1.1e-05  Score=80.98  Aligned_cols=228  Identities=10%  Similarity=-0.003  Sum_probs=128.6

Q ss_pred             CCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe-CCCcEEEEeCCC----CeEEEEEecCCcceEEEEEecC
Q psy226          127 DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS-ADMSLKLWDMST----YQCLKTMQGHDHNVTGVAFLPN  201 (406)
Q Consensus       127 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs-~d~~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~p~  201 (406)
                      .+.|++.++.+.++...+.. ...+..|+|++.+..|+.+. ..+.|+.+++.+    ......+........++++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            45788888887766544433 34567899998776666554 457899998875    1111111111123456788755


Q ss_pred             CC-EEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCE-EEEEeCC-CeEEEEeCCCccceeEEecCCceEE
Q psy226          202 SD-FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL-LASCSND-HTARVWSLATKETKAELRGHDHTVE  278 (406)
Q Consensus       202 ~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~~~d-~~v~vwd~~~~~~~~~~~~~~~~v~  278 (406)
                      +. ++++-...+.|.+.++........+.........++++|.+.+ +++-... +.|.++++........+........
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  543 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence            44 4444455678999998765444333333344677899986544 4443222 6787777754322211111112233


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe--CCCcCEEEEEEcCCCCEEEEEeCCC
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI--GHDNWVRGVTFHPGGKYLVSCGDDK  356 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~--~h~~~v~~l~~s~~g~~l~sgs~d~  356 (406)
                      .+++.|.                 .+.+.++-+..+.|..+|+........+.  .......+|++..+ ..+++....+
T Consensus       544 Glavd~~-----------------~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~  605 (699)
T 1n7d_A          544 GITLDLL-----------------SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINE  605 (699)
T ss_dssp             CEEECTT-----------------TCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTT
T ss_pred             EEEEecc-----------------CCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCC
Confidence            4566552                 34455555667789999985432222221  11233445666554 4445556678


Q ss_pred             eEEEEeCCCCccceeec
Q psy226          357 TLRVWDTANKRNMKTLE  373 (406)
Q Consensus       357 ~i~vwd~~~~~~~~~l~  373 (406)
                      .|..+|..+++.+..+.
T Consensus       606 ~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          606 AIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             CEEEEETTTEEEEECCC
T ss_pred             eEEEEEccCCCceEEee
Confidence            99999988777666664

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=0.0056  Score=58.04  Aligned_cols=234  Identities=13%  Similarity=0.154  Sum_probs=137.6

Q ss_pred             eeeEEECC-CCCEEEEEeC-CCcEEEEeCCCCeEEEEEecC---CcceEEEEE-------ecCCCEEEEEeCCC------
Q psy226          151 VQDIAFDQ-SGKLLVSCSA-DMSLKLWDMSTYQCLKTMQGH---DHNVTGVAF-------LPNSDFVLSASRDK------  212 (406)
Q Consensus       151 V~~l~~~~-~g~~l~sgs~-d~~i~vwd~~~~~~~~~~~~h---~~~v~~~~~-------~p~~~~l~s~s~d~------  212 (406)
                      ...|+|+| ++..|+.+.. .+.|++.|+.++........-   ......++|       +++++.|+++...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            44789998 3444554443 467889998876654433321   224789999       99999777666554      


Q ss_pred             -cEEEEEcCC-CeEE-----EEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEeCC-------Cccc-----------
Q psy226          213 -TIKMWEVAT-GYCV-----KTLTGHREWVRQIKVSP-DGTLLASCSNDHTARVWSLA-------TKET-----------  266 (406)
Q Consensus       213 -~i~iwd~~~-~~~~-----~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~v~vwd~~-------~~~~-----------  266 (406)
                       .|.+.+... +...     ..+... .....++++| ++.++++-..++.|..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             255665333 1211     122211 2345678899 55666667788899999987       3332           


Q ss_pred             eeEE-e-cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEE-EEEeCCCcEEEEEC--CCCeE--EEEEeCC---C--
Q psy226          267 KAEL-R-GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYL-ATGSRDKTIKLWDV--GSGSL--LFTLIGH---D--  334 (406)
Q Consensus       267 ~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~lwd~--~~~~~--~~~~~~h---~--  334 (406)
                      ...+ . +.......++|+|                  .|.+| ++-+....|+.++.  ..+..  ...+.+.   .  
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p------------------~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~  361 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHP------------------TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGY  361 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECT------------------TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCC
T ss_pred             cceeEecCCCCCceEEEEcC------------------CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcc
Confidence            1111 1 1122345677777                  35543 44445667888554  33322  0222221   1  


Q ss_pred             ----------cCEE-EEEEc-------CCCCEEEEEeCCCeEEEEeCCCCccceeeccc---------------------
Q psy226          335 ----------NWVR-GVTFH-------PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH---------------------  375 (406)
Q Consensus       335 ----------~~v~-~l~~s-------~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h---------------------  375 (406)
                                .... .++..       ++|.++++=..+++|+.++ .++ .+.++-+.                     
T Consensus       362 ~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~  439 (496)
T 3kya_A          362 RDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDLRE  439 (496)
T ss_dssp             BCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEETTT
T ss_pred             cCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCchh
Confidence                      1244 45554       5677777777788999998 345 33344221                     


Q ss_pred             ---cceEEEEEEeCC-CCEEEEeeCCCeEEEeec
Q psy226          376 ---SHFVTSLDFHRA-HPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       376 ---~~~v~~l~~~~~-~~~l~sgs~Dg~v~iw~~  405 (406)
                         -.....|+++++ +.+.++-+....|+.+++
T Consensus       440 ~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~  473 (496)
T 3kya_A          440 VARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM  473 (496)
T ss_dssp             TCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             hhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEEC
Confidence               113678999997 777777777888988875

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.07  E-value=0.0062  Score=55.50  Aligned_cols=98  Identities=13%  Similarity=0.151  Sum_probs=60.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE--ec---ccccCeeeEEECCC---CCEEEEEeC-C-----CcEE
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERA--LH---GHLDSVQDIAFDQS---GKLLVSCSA-D-----MSLK  173 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~--~~---~h~~~V~~l~~~~~---g~~l~sgs~-d-----~~i~  173 (406)
                      .-..++|.|+++++++ ..+|.|++++  +++....  +.   ........|+|+|+   +..|+.+.. .     ..|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4568999999996665 5669999998  4543211  11   12346789999998   555554433 2     5677


Q ss_pred             EEeCCCCe-----E-EEEEe---cCCcceEEEEEecCCCEEEEE
Q psy226          174 LWDMSTYQ-----C-LKTMQ---GHDHNVTGVAFLPNSDFVLSA  208 (406)
Q Consensus       174 vwd~~~~~-----~-~~~~~---~h~~~v~~~~~~p~~~~l~s~  208 (406)
                      .++.....     . +..+.   +..+....++|.|+|.+.++.
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            78776431     1 12232   112344689999999766664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.03  E-value=0.0071  Score=54.43  Aligned_cols=228  Identities=14%  Similarity=0.059  Sum_probs=120.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec---ccccCeeeEEECCCCCEEEEEeCCCcE-EEEeC-CCC
Q psy226          106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH---GHLDSVQDIAFDQSGKLLVSCSADMSL-KLWDM-STY  180 (406)
Q Consensus       106 ~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~---~h~~~V~~l~~~~~g~~l~sgs~d~~i-~vwd~-~~~  180 (406)
                      ..++.+|.|+| +..++. +.+|.|.. ....|+-=..+.   .+...+..+.+.+++..++.+ .++.| +-.|- .+.
T Consensus        79 ~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW  154 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNW  154 (327)
T ss_dssp             CCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSE
T ss_pred             CccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCC
Confidence            34688899987 444444 45664443 222233211111   233457778877777666655 45544 33331 122


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEc--CCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEV--ATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV  258 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~v  258 (406)
                      +.  ...++...+.++.+.|++.+++.+...+..+-+|-  .+-..+  -......+..+.+.+++.++ .++.+|.+++
T Consensus       155 ~~--~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~  229 (327)
T 2xbg_A          155 QA--LVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAF  229 (327)
T ss_dssp             EE--EECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEE
T ss_pred             EE--eecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEE
Confidence            22  22345567899999998887766644333333442  111222  12345678889999998765 4556788777


Q ss_pred             EeCCCccceeEEe-c---CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe---
Q psy226          259 WSLATKETKAELR-G---HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI---  331 (406)
Q Consensus       259 wd~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~---  331 (406)
                      .+...+..-..+. .   ....+..+.+.|                  .+.++++ +.++.| ++....|+.-..+.   
T Consensus       230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~------------------~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~  289 (327)
T 2xbg_A          230 SDPDNSENWGELLSPLRRNSVGFLDLAYRT------------------PNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVK  289 (327)
T ss_dssp             EETTEEEEECCCBCTTSSCCSCEEEEEESS------------------SSCEEEE-ESTTCE-EEESSTTSSCEECGGGT
T ss_pred             ecCCCCCeeEeccCCcccCCcceEEEEecC------------------CCEEEEE-eCCCeE-EEeCCCCcccEEcCccC
Confidence            6422121111111 1   122466666654                  2334444 446666 33333343222222   


Q ss_pred             CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy226          332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       332 ~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~  363 (406)
                      .....+.++.|.+++. ++.++.+|.|.-++-
T Consensus       290 ~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          290 KVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             TSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             CCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            2234577888876554 566777898877653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.02  E-value=0.0032  Score=62.04  Aligned_cols=228  Identities=9%  Similarity=0.010  Sum_probs=124.8

Q ss_pred             CCcEEEEEcCCCcE-EEEecccccCeeeEEECCCCCEEEEEe-CCCcEEEEeCCCCeE-EEEEecCCcceEEEEEecCCC
Q psy226          127 DATIRLWDYETGEY-ERALHGHLDSVQDIAFDQSGKLLVSCS-ADMSLKLWDMSTYQC-LKTMQGHDHNVTGVAFLPNSD  203 (406)
Q Consensus       127 dg~v~vwd~~~~~~-~~~~~~h~~~V~~l~~~~~g~~l~sgs-~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~p~~~  203 (406)
                      ...|+.-|+..... ...+......+..|+|++.+..|+.+. ..+.|..+++..... ...+...-....++++.+.++
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            45677777765431 122223345577899998777666554 457788888875432 222332235678999999666


Q ss_pred             EEEE-EeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC--CCeEEEEeCCCccceeEEecCCceEEEE
Q psy226          204 FVLS-ASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN--DHTARVWSLATKETKAELRGHDHTVECV  280 (406)
Q Consensus       204 ~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~v~~~  280 (406)
                      .|+. -...+.|.+.++........+...-.....|+++|.+..|.....  .+.|...++..................+
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl  176 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL  176 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence            5554 455788999998755433333344445678999997554444332  4567777765433332222223345566


Q ss_pred             EeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy226          281 AWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRV  360 (406)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~v  360 (406)
                      ++.+.                 .+.+.++-...+.|...|+..........+......+|++.++ ...++-...+.|..
T Consensus       177 ald~~-----------------~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~  238 (619)
T 3s94_A          177 TLDYE-----------------EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILA  238 (619)
T ss_dssp             EEETT-----------------TTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEE
T ss_pred             EEEcc-----------------CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEE
Confidence            66653                 2344444455677888887543322222212222346777655 44445456788999


Q ss_pred             EeCCCCccceee
Q psy226          361 WDTANKRNMKTL  372 (406)
Q Consensus       361 wd~~~~~~~~~l  372 (406)
                      .|..+++....+
T Consensus       239 ~d~~tg~~~~~i  250 (619)
T 3s94_A          239 CNKYTGEGLREI  250 (619)
T ss_dssp             EESSSCCCCEEC
T ss_pred             EECCCCcccEEE
Confidence            998777654444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.98  E-value=0.0095  Score=54.24  Aligned_cols=100  Identities=15%  Similarity=0.237  Sum_probs=60.8

Q ss_pred             cCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE--EEEEe---cCCcceEEEEEecC---CCEEEEEeC-C-----CcE
Q psy226          149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC--LKTMQ---GHDHNVTGVAFLPN---SDFVLSASR-D-----KTI  214 (406)
Q Consensus       149 ~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~--~~~~~---~h~~~v~~~~~~p~---~~~l~s~s~-d-----~~i  214 (406)
                      .....++|.|+|+++++ ..++.|.+++  +++.  +..+.   ........++|+|+   +..|+.+.. .     ..|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34678999999985554 5679999998  3332  11111   11346789999998   555544433 2     567


Q ss_pred             EEEEcCCCe-----EE-EEee---cCCccEEEEEECCCCCEEEEEe
Q psy226          215 KMWEVATGY-----CV-KTLT---GHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       215 ~iwd~~~~~-----~~-~~~~---~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                      ..++...+.     .+ ..+.   +.......++|.|+|.+.++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            777776431     11 1132   1112346799999998777654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.97  E-value=0.00094  Score=59.48  Aligned_cols=164  Identities=10%  Similarity=0.137  Sum_probs=110.0

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCcEEEE-ecc----cc--cCeeeEEE---CCCCCEEEEEe
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCS-EDATIRLWDYETGEYERA-LHG----HL--DSVQDIAF---DQSGKLLVSCS  167 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs-~dg~v~vwd~~~~~~~~~-~~~----h~--~~V~~l~~---~~~g~~l~sgs  167 (406)
                      .+.+.+...--.+++|++....+..++ ..|+|..||..++..... +.+    ..  ..+..|.|   .|+++++++..
T Consensus         5 ~i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~   84 (334)
T 2p9w_A            5 QIDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK   84 (334)
T ss_dssp             EEEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred             eEEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence            344444444455789998666665555 799999999986654433 222    11  13578999   68877777543


Q ss_pred             -------------CCCcEEEEeCC---CCeEEEEEe--cCC-----------cceEEEEEecCCCEEEEEeCC-CcEEEE
Q psy226          168 -------------ADMSLKLWDMS---TYQCLKTMQ--GHD-----------HNVTGVAFLPNSDFVLSASRD-KTIKMW  217 (406)
Q Consensus       168 -------------~d~~i~vwd~~---~~~~~~~~~--~h~-----------~~v~~~~~~p~~~~l~s~s~d-~~i~iw  217 (406)
                                   .+..+..+|+.   +++.+....  ...           .....++..++|+..++++.- +.|...
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV  164 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV  164 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence                         26779999998   676554433  111           247889999999998888887 776666


Q ss_pred             EcCCCeEEEEee--c----CCccEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy226          218 EVATGYCVKTLT--G----HREWVRQIKVSPDGTLLASCSNDHTARVWSLAT  263 (406)
Q Consensus       218 d~~~~~~~~~~~--~----~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~  263 (406)
                      +.... .+..+.  .    .....+.|++.|+|++|++...+|.+..+|+..
T Consensus       165 ~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          165 SADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            65432 222221  1    112256899999999888887799999999874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.94  E-value=4e-05  Score=76.81  Aligned_cols=216  Identities=12%  Similarity=0.023  Sum_probs=120.3

Q ss_pred             CeEEEEEcCCCCEEE-EEeCCCcEEEEEcCC----CcEEEEecccccCeeeEEECCCCC-EEEEEeCCCcEEEEeCCCCe
Q psy226          108 PVIKVIFHPVFSLMA-SCSEDATIRLWDYET----GEYERALHGHLDSVQDIAFDQSGK-LLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       108 ~V~~v~~~p~~~~la-tgs~dg~v~vwd~~~----~~~~~~~~~h~~~V~~l~~~~~g~-~l~sgs~d~~i~vwd~~~~~  181 (406)
                      .+..++|++....|+ +-...+.|+.+++.+    ......+.........|++.+.+. +.++-...+.|.+.++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            456788998766555 445567899998875    222222222223456788886544 44444556889999987544


Q ss_pred             EEEEEecCCcceEEEEEecCCCEEEEEeC-C-CcEEEEEcCCCeEEEEeecCCccEEEEEECCCC-CEEEEEeCCCeEEE
Q psy226          182 CLKTMQGHDHNVTGVAFLPNSDFVLSASR-D-KTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG-TLLASCSNDHTARV  258 (406)
Q Consensus       182 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-d-~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~v~v  258 (406)
                      ....+.........+++.|.+.+|+.+.. . +.|...++........+...-.+.+.|+++|++ .++++-+..+.|.+
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~  566 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  566 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence            33222222344577889987665555432 2 677777764322222222233456789999875 45556566788999


Q ss_pred             EeCCCccceeEEecCC--ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcC
Q psy226          259 WSLATKETKAELRGHD--HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNW  336 (406)
Q Consensus       259 wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~  336 (406)
                      +++........+....  .....+++.                   .+.++++....+.|..+|..+|+.+..+......
T Consensus       567 ~d~dG~~~~~~~~~~~~~~~P~glavd-------------------~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~  627 (699)
T 1n7d_A          567 IDVNGGNRKTILEDEKRLAHPFSLAVF-------------------EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLS  627 (699)
T ss_dssp             ECSSSSCCEEECCCSSSCSSCCCCEEE-------------------TTEEEEECSTTTCEEEEETTTEEEEECCCTTCSS
T ss_pred             EccCCCceEEEEecCCcCCCceEeEEE-------------------CCEEEEEeCCCCeEEEEEccCCCceEEeecCCCC
Confidence            9986433222111100  000011111                   1345555566788999998888877666433323


Q ss_pred             EEEEEE
Q psy226          337 VRGVTF  342 (406)
Q Consensus       337 v~~l~~  342 (406)
                      ...|++
T Consensus       628 P~~i~v  633 (699)
T 1n7d_A          628 PEDMVL  633 (699)
T ss_dssp             CCCCCB
T ss_pred             CcEEEE
Confidence            344433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.92  E-value=0.0085  Score=53.36  Aligned_cols=196  Identities=9%  Similarity=0.080  Sum_probs=116.6

Q ss_pred             CcceEEEEEecCCCEEEEEe-CCCcEEEEEcCCCeEEEEeecC-------CccEEEEEE---CCCCCEEEEEe-------
Q psy226          190 DHNVTGVAFLPNSDFVLSAS-RDKTIKMWEVATGYCVKTLTGH-------REWVRQIKV---SPDGTLLASCS-------  251 (406)
Q Consensus       190 ~~~v~~~~~~p~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~---~~~~~~l~s~~-------  251 (406)
                      ...-.+++|++....+..++ ..++|..||...+.........       ...+..|.+   .|+++++++..       
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            33445788988767666666 7899999998765433332221       113578999   68887777543       


Q ss_pred             ------CCCeEEEEeCC---CccceeEEe--cC-----------CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEE
Q psy226          252 ------NDHTARVWSLA---TKETKAELR--GH-----------DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLAT  309 (406)
Q Consensus       252 ------~d~~v~vwd~~---~~~~~~~~~--~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  309 (406)
                            .+..|..+|+.   +++.+....  ..           ......++..+                  .|...++
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~------------------~GnaYVt  153 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR------------------DGNSYVA  153 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT------------------TSCEEEE
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC------------------CCCEEEe
Confidence                  26789999998   665543322  11           12355566554                  4666677


Q ss_pred             EeCC-CcEEEEECCCCeEEEEEeC-----CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--ceee-ccc---cc
Q psy226          310 GSRD-KTIKLWDVGSGSLLFTLIG-----HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN--MKTL-EAH---SH  377 (406)
Q Consensus       310 ~~~d-~~i~lwd~~~~~~~~~~~~-----h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~--~~~l-~~h---~~  377 (406)
                      ++.- +.|...+........-+..     .....+.++++|+|+.|++...+|.+..+|+.+...  +..- .+.   -.
T Consensus       154 ~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~  233 (334)
T 2p9w_A          154 FALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLS  233 (334)
T ss_dssp             EEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCT
T ss_pred             CCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCccccc
Confidence            7766 7766666543322211111     112356899999999988887799999999875433  2110 011   11


Q ss_pred             eEEE-EEEeCCCCE-EEEeeCCCeEEEe
Q psy226          378 FVTS-LDFHRAHPY-VVTGSVDKTVKVW  403 (406)
Q Consensus       378 ~v~~-l~~~~~~~~-l~sgs~Dg~v~iw  403 (406)
                      .... +.--.+|+. |++.+..+.+.+.
T Consensus       234 ~~dgilp~~~~G~vllV~~~~~~~~~l~  261 (334)
T 2p9w_A          234 GTEKIVTVPVGNESVLVGARAPYAISFR  261 (334)
T ss_dssp             TEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             CcccccccccCCEEEEEEcCCCCEEEEE
Confidence            1233 344456766 5555556655543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.83  E-value=0.017  Score=56.89  Aligned_cols=159  Identities=11%  Similarity=-0.007  Sum_probs=104.5

Q ss_pred             CCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEE
Q psy226          107 SPVIKVIFHPVFSL-MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSC-SADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       107 ~~V~~v~~~p~~~~-latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sg-s~d~~i~vwd~~~~~~~~  184 (406)
                      ..+..++|++.... +++-..++.|..++.........+.........|++++.+..|+.+ ...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            45778999987555 4565667899999987765555454334567789998766655544 456789999986543222


Q ss_pred             EEecCCcceEEEEEecCCCEEEEEeC--CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEE-EEeCCCeEEEEeC
Q psy226          185 TMQGHDHNVTGVAFLPNSDFVLSASR--DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLA-SCSNDHTARVWSL  261 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~v~vwd~  261 (406)
                      .+...-....++++.|....|+....  .+.|...++.... ...+...-.+...|++++++..|. +=...+.|..+|+
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            22233345689999997666666553  4567777765433 333333456778999999766554 4456788999998


Q ss_pred             CCccc
Q psy226          262 ATKET  266 (406)
Q Consensus       262 ~~~~~  266 (406)
                      .....
T Consensus       196 dG~~~  200 (628)
T 4a0p_A          196 LGLNR  200 (628)
T ss_dssp             TSCSC
T ss_pred             CCCce
Confidence            65433

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.62  E-value=0.0045  Score=54.81  Aligned_cols=213  Identities=12%  Similarity=0.151  Sum_probs=103.2

Q ss_pred             CcEEEEEcCCCcEEEEec--ccccCeeeEEECCCCCEEEEEeCC-----CcEEEEeCCCCe-----EEEEEecCCcceEE
Q psy226          128 ATIRLWDYETGEYERALH--GHLDSVQDIAFDQSGKLLVSCSAD-----MSLKLWDMSTYQ-----CLKTMQGHDHNVTG  195 (406)
Q Consensus       128 g~v~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~g~~l~sgs~d-----~~i~vwd~~~~~-----~~~~~~~h~~~v~~  195 (406)
                      ..+.+||..+++....-.  .....-..+.  .++.+++.|+.+     ..+.+||..+.+     .+..+.........
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence            468889988876544221  1111111222  256677777754     468899987654     22222211122222


Q ss_pred             EEEecCCCEEEEEeCC-----CcEEEEEcCCCeEEEE--eecCCccEEEEEECCCCCEEEEEeCC-----CeEEEEeCCC
Q psy226          196 VAFLPNSDFVLSASRD-----KTIKMWEVATGYCVKT--LTGHREWVRQIKVSPDGTLLASCSND-----HTARVWSLAT  263 (406)
Q Consensus       196 ~~~~p~~~~l~s~s~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~~~d-----~~v~vwd~~~  263 (406)
                      +.+  ++..++.|+.+     ..+.+||..+..-...  +.........+.+  ++++++.|+.+     ..+.+||+.+
T Consensus       109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~  184 (301)
T 2vpj_A          109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT  184 (301)
T ss_dssp             EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence            222  56666666654     3578889877653322  2111111122222  56677777654     3477777765


Q ss_pred             ccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC-----CcEEEEECCCCeEEEE--EeCCCcC
Q psy226          264 KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD-----KTIKLWDVGSGSLLFT--LIGHDNW  336 (406)
Q Consensus       264 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~lwd~~~~~~~~~--~~~h~~~  336 (406)
                      ..=. .+..          .|...... ..      ...++.+++.|+.+     ..+.+||+.+.+-...  +......
T Consensus       185 ~~W~-~~~~----------~p~~r~~~-~~------~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~  246 (301)
T 2vpj_A          185 GHWT-NVTP----------MATKRSGA-GV------ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY  246 (301)
T ss_dssp             TEEE-EECC----------CSSCCBSC-EE------EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred             CcEE-eCCC----------CCcccccc-eE------EEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence            3211 1100          00000000 00      00134566666654     4689999987653221  1111111


Q ss_pred             EEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCC
Q psy226          337 VRGVTFHPGGKYLVSCGDD-----KTLRVWDTANK  366 (406)
Q Consensus       337 v~~l~~s~~g~~l~sgs~d-----~~i~vwd~~~~  366 (406)
                      ...+.+  +++.++.|+.+     ..|.+||..+.
T Consensus       247 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          247 VGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             CEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             eeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            222332  56677777654     45778887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.60  E-value=0.04  Score=50.11  Aligned_cols=227  Identities=14%  Similarity=0.136  Sum_probs=118.5

Q ss_pred             cCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEe---cCCcceEEEEEecC---CCEEEEEeC----C----Cc
Q psy226          149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ-CLKTMQ---GHDHNVTGVAFLPN---SDFVLSASR----D----KT  213 (406)
Q Consensus       149 ~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~-~~~~~~---~h~~~v~~~~~~p~---~~~l~s~s~----d----~~  213 (406)
                      .....++|.|+|++++ +..++.|+++|. +++ .+..+.   ........++++|+   +..|+.+..    +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            4567899999997554 566699999974 444 222211   12345789999997   455544332    3    56


Q ss_pred             EEEEEcCCC-------eEE-EEeec-CCccEEEEEECCCCCEEEEEeCC-------------CeEEEEeCCCc-------
Q psy226          214 IKMWEVATG-------YCV-KTLTG-HREWVRQIKVSPDGTLLASCSND-------------HTARVWSLATK-------  264 (406)
Q Consensus       214 i~iwd~~~~-------~~~-~~~~~-~~~~v~~l~~~~~~~~l~s~~~d-------------~~v~vwd~~~~-------  264 (406)
                      |..|+...+       +.+ ..+.. .......++|.|||.+.++.+..             |.|.-++....       
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            777776543       111 11221 11234679999999877775432             34555544321       


Q ss_pred             -cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC-CC--cEEEEEC--------CC--------C
Q psy226          265 -ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR-DK--TIKLWDV--------GS--------G  324 (406)
Q Consensus       265 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~lwd~--------~~--------~  324 (406)
                       .......++. ....++|.|.                 .+.++++-.. ++  .|.+...        ..        .
T Consensus       187 ~~~~i~a~G~r-np~Gla~d~~-----------------~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~  248 (354)
T 3a9g_A          187 PNSPIWSYGHR-NPQGIDWHRA-----------------SGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFV  248 (354)
T ss_dssp             TTCCEEEECCS-CCCEEEECTT-----------------TCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSC
T ss_pred             CCCcEEEEccC-CcceEEEeCC-----------------CCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCc
Confidence             0011111222 1234555552                 1222222111 11  1221110        00        0


Q ss_pred             eEEEEEeCCCcCEEEEEEc-------CCCCEEEEEeCCCeEEEEeCCCC-ccc--eee-ccccceEEEEEEeCCCCEEEE
Q psy226          325 SLLFTLIGHDNWVRGVTFH-------PGGKYLVSCGDDKTLRVWDTANK-RNM--KTL-EAHSHFVTSLDFHRAHPYVVT  393 (406)
Q Consensus       325 ~~~~~~~~h~~~v~~l~~s-------~~g~~l~sgs~d~~i~vwd~~~~-~~~--~~l-~~h~~~v~~l~~~~~~~~l~s  393 (406)
                      .++..+.........++|.       .+|.++++.-..+.|...++... +..  ..+ ......+..+++.|+|.+.++
T Consensus       249 ~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~  328 (354)
T 3a9g_A          249 DPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIS  328 (354)
T ss_dssp             CCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEE
T ss_pred             CCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEE
Confidence            1222221112357788883       56777777777788888887743 221  222 222346899999999987776


Q ss_pred             ee
Q psy226          394 GS  395 (406)
Q Consensus       394 gs  395 (406)
                      ..
T Consensus       329 ~~  330 (354)
T 3a9g_A          329 TS  330 (354)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.54  E-value=0.049  Score=49.53  Aligned_cols=232  Identities=11%  Similarity=0.073  Sum_probs=120.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc-EEEEec---ccccCeeeEEECCC---CCEEEEEeC----C----Cc
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGE-YERALH---GHLDSVQDIAFDQS---GKLLVSCSA----D----MS  171 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~-~~~~~~---~h~~~V~~l~~~~~---g~~l~sgs~----d----~~  171 (406)
                      .....++|.|+++++++ ..+|.|+++| .+++ ....+.   ........|+++|+   +..|+.+..    +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            44678999999986655 5569999997 4554 111111   12345789999997   455544433    3    56


Q ss_pred             EEEEeCCCC-------eEE-EEEe-cCCcceEEEEEecCCCEEEEEeC-------------CCcEEEEEcCCC-------
Q psy226          172 LKLWDMSTY-------QCL-KTMQ-GHDHNVTGVAFLPNSDFVLSASR-------------DKTIKMWEVATG-------  222 (406)
Q Consensus       172 i~vwd~~~~-------~~~-~~~~-~h~~~v~~~~~~p~~~~l~s~s~-------------d~~i~iwd~~~~-------  222 (406)
                      |..|+....       +.+ ..+. +..+....++|.|+|.+.++-+.             .+.|.-++....       
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            777776543       111 1122 12234567999999987666432             134444444321       


Q ss_pred             --eEEEEeecCCccEEEEEECC-CCCEEEEEeCCCe---EEEEeCCC--------c--------cceeEEecCCceEEEE
Q psy226          223 --YCVKTLTGHREWVRQIKVSP-DGTLLASCSNDHT---ARVWSLAT--------K--------ETKAELRGHDHTVECV  280 (406)
Q Consensus       223 --~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~---v~vwd~~~--------~--------~~~~~~~~~~~~v~~~  280 (406)
                        ..+. ..++.. ...++|+| +|.++++-...+.   |.+..-..        .        .+...+.........+
T Consensus       187 ~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~  264 (354)
T 3a9g_A          187 PNSPIW-SYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA  264 (354)
T ss_dssp             TTCCEE-EECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred             CCCcEE-EEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence              0111 123432 45789999 6766655433221   33222100        0        0111110001123333


Q ss_pred             EeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC-eEE--EEEe-CCCcCEEEEEEcCCCCEEEEEe
Q psy226          281 AWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG-SLL--FTLI-GHDNWVRGVTFHPGGKYLVSCG  353 (406)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~-~~~--~~~~-~h~~~v~~l~~s~~g~~l~sgs  353 (406)
                      ++..+...           ....|.++++....+.|...++... ...  ..+. +-...+..+++.|+|...++..
T Consensus       265 ~~y~g~~f-----------p~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          265 SFVHGDMF-----------PGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EECCSSSC-----------GGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             EEECCCCC-----------cccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            43322110           1124566666666777888887643 322  2332 2245688999999997666654

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=97.49  E-value=0.0003  Score=48.87  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHhhcCCChh
Q psy226            8 REELNKAVADYLLSNGYLSALEGFKKDADLPAE   40 (406)
Q Consensus         8 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   40 (406)
                      .+|+|.+|+|||+|+||.+++.+|+.|+.+++.
T Consensus         5 sdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~   37 (90)
T 2xtc_A            5 SDEVNFLVYRYLQESGFSHSAFTFGIESHISQS   37 (90)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCcc
Confidence            689999999999999999999999999887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.44  E-value=0.015  Score=51.37  Aligned_cols=212  Identities=13%  Similarity=0.183  Sum_probs=100.7

Q ss_pred             CcEEEEEcCCCcEEEEe--cccccCeeeEEECCCCCEEEEEeCC-----CcEEEEeCCCCeEEEE--EecCCcceEEEEE
Q psy226          128 ATIRLWDYETGEYERAL--HGHLDSVQDIAFDQSGKLLVSCSAD-----MSLKLWDMSTYQCLKT--MQGHDHNVTGVAF  198 (406)
Q Consensus       128 g~v~vwd~~~~~~~~~~--~~h~~~V~~l~~~~~g~~l~sgs~d-----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~  198 (406)
                      ..+..||..+.+....-  ......-..+.+  ++.+++.|+.+     ..+.+||..+.+....  +.........+.+
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  107 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL  107 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence            35788898887654431  111111112222  56677777654     3588899877653221  1111111222222


Q ss_pred             ecCCCEEEEEeCCC-----cEEEEEcCCCeEEEE--eecCCccEEEEEECCCCCEEEEEeCC-------CeEEEEeCCCc
Q psy226          199 LPNSDFVLSASRDK-----TIKMWEVATGYCVKT--LTGHREWVRQIKVSPDGTLLASCSND-------HTARVWSLATK  264 (406)
Q Consensus       199 ~p~~~~l~s~s~d~-----~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~~~d-------~~v~vwd~~~~  264 (406)
                        ++..++.|+.++     .+.+||..+..-...  +.........+.+  ++++++.|+.+       ..+.+||+.+.
T Consensus       108 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~  183 (302)
T 2xn4_A          108 --NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN  183 (302)
T ss_dssp             --TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred             --CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence              566667776553     477888877643322  1111111122222  55666666542       34677777653


Q ss_pred             ccee--EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC-----CcEEEEECCCCeEEEE--EeCCCc
Q psy226          265 ETKA--ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD-----KTIKLWDVGSGSLLFT--LIGHDN  335 (406)
Q Consensus       265 ~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~lwd~~~~~~~~~--~~~h~~  335 (406)
                      .=..  .+.........+.                    .++.+++.|+.+     +.+.+||+.+.+=...  +.....
T Consensus       184 ~W~~~~~~p~~r~~~~~~~--------------------~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~  243 (302)
T 2xn4_A          184 EWTYIAEMSTRRSGAGVGV--------------------LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRR  243 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEE--------------------ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             cEEECCCCccccccccEEE--------------------ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccc
Confidence            2111  0000000000000                    134566666654     3688999877643221  111111


Q ss_pred             CEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCc
Q psy226          336 WVRGVTFHPGGKYLVSCGDDK-----TLRVWDTANKR  367 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs~d~-----~i~vwd~~~~~  367 (406)
                      ....+.+  +++.++.|+.++     .+.+||..+.+
T Consensus       244 ~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          244 NAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             SCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             cCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            1122222  567777777553     47888887643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.43  E-value=0.067  Score=48.55  Aligned_cols=237  Identities=11%  Similarity=0.103  Sum_probs=118.3

Q ss_pred             CCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCcEEEEec-------ccccCeeeEEECCC---CCEEEEEe-C------
Q psy226          107 SPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYERALH-------GHLDSVQDIAFDQS---GKLLVSCS-A------  168 (406)
Q Consensus       107 ~~V~~v~~~p~~~-~latgs~dg~v~vwd~~~~~~~~~~~-------~h~~~V~~l~~~~~---g~~l~sgs-~------  168 (406)
                      .....++|.|+++ +++ +...|.|++++. ++.....+.       ........|+|+|+   +..|..+. .      
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            3457899999999 555 456799999985 333221111       11235678999996   44454442 2      


Q ss_pred             -CCcEEEEeCCCC--e--EEEE-Eec------CCcceEEEEEecCCCEEEEEeC-------------CCcEEEEEcCCCe
Q psy226          169 -DMSLKLWDMSTY--Q--CLKT-MQG------HDHNVTGVAFLPNSDFVLSASR-------------DKTIKMWEVATGY  223 (406)
Q Consensus       169 -d~~i~vwd~~~~--~--~~~~-~~~------h~~~v~~~~~~p~~~~l~s~s~-------------d~~i~iwd~~~~~  223 (406)
                       ...|..|++...  .  .... +.+      ..+.-..+.|.|+|.+.++-+.             .+.|.-+|.....
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             224666665432  1  1111 111      1233467999999965555332             1345555543210


Q ss_pred             ------------EEEEe-ecCCccEEEEEECC-CCCEEEEEeC-CCeEEEEeCCCccc----------------------
Q psy226          224 ------------CVKTL-TGHREWVRQIKVSP-DGTLLASCSN-DHTARVWSLATKET----------------------  266 (406)
Q Consensus       224 ------------~~~~~-~~~~~~v~~l~~~~-~~~~l~s~~~-d~~v~vwd~~~~~~----------------------  266 (406)
                                  ....+ .+++ ....++|+| +|.++++-.. ++.=.|.-+..+..                      
T Consensus       176 p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence                        11111 2333 356789999 5655554322 22122222211100                      


Q ss_pred             ---------eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEE--Ee-CCC
Q psy226          267 ---------KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFT--LI-GHD  334 (406)
Q Consensus       267 ---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~--~~-~h~  334 (406)
                               ...+..| .....+.+..+..           .....+.++++....+.|...++..++.+..  +. +..
T Consensus       255 ~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~-----------fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  322 (353)
T 2g8s_A          255 EIVAGTEQPVFYWKDS-PAVSGMAFYNSDK-----------FPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRG  322 (353)
T ss_dssp             SSCTTSCCCSEEESSC-CCEEEEEEECCSS-----------SGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGC
T ss_pred             CCCCCccCCeEEeCCC-cCcceeEEECCcc-----------CcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCC
Confidence                     0000001 1122222222110           0012466777666777777777766544322  22 223


Q ss_pred             cCEEEEEEcCCCCEEEEEe-CCCeE
Q psy226          335 NWVRGVTFHPGGKYLVSCG-DDKTL  358 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs-~d~~i  358 (406)
                      ..+..+++.|+|...++.. .+|.|
T Consensus       323 ~rp~~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          323 QRIRDVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             CCEEEEEECTTSCEEEEECSTTEEE
T ss_pred             CceeEEEECCCCcEEEEEeCCCCEE
Confidence            4689999999998666533 34544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.36  E-value=0.024  Score=50.12  Aligned_cols=219  Identities=10%  Similarity=0.104  Sum_probs=107.5

Q ss_pred             EEEEEeC--CCcEEEEEcCCCcEEEEec--ccccCeeeEEECCCCCEEEEEeCC----CcEEEEeCCCCeEEEE--EecC
Q psy226          120 LMASCSE--DATIRLWDYETGEYERALH--GHLDSVQDIAFDQSGKLLVSCSAD----MSLKLWDMSTYQCLKT--MQGH  189 (406)
Q Consensus       120 ~latgs~--dg~v~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~g~~l~sgs~d----~~i~vwd~~~~~~~~~--~~~h  189 (406)
                      +++.|+.  ...+.+||..+++....-.  .....-..+.+  ++.+++.|+.+    ..+.+||..+.+....  +...
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            4445544  3578899988877553311  11111122222  56677777754    5688899887653322  2111


Q ss_pred             CcceEEEEEecCCCEEEEEeCC------CcEEEEEcCCCeEEEE--eecCCccEEEEEECCCCCEEEEEeC---------
Q psy226          190 DHNVTGVAFLPNSDFVLSASRD------KTIKMWEVATGYCVKT--LTGHREWVRQIKVSPDGTLLASCSN---------  252 (406)
Q Consensus       190 ~~~v~~~~~~p~~~~l~s~s~d------~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~~~---------  252 (406)
                      ......+.+  ++.+++.|+.+      ..+.+||..+..-...  +.........+.+  ++++++.|+.         
T Consensus        92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEE
T ss_pred             ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccc
Confidence            111222222  56667777765      4588899887653322  1111111122222  5566666653         


Q ss_pred             CCeEEEEeCCCccceeEEecCC---ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC-----CcEEEEECCCC
Q psy226          253 DHTARVWSLATKETKAELRGHD---HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD-----KTIKLWDVGSG  324 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~lwd~~~~  324 (406)
                      -..+.+||+.+..=. .+....   ..-..+.                    .++.+++.|+.+     ..+.+||+.+.
T Consensus       168 ~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~--------------------~~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          168 LNSCEVYDPATETWT-ELCPMIEARKNHGLVF--------------------VKDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             CCCEEEEETTTTEEE-EECCCSSCCBSCEEEE--------------------ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             cceEEEeCCCCCeEE-ECCCccchhhcceEEE--------------------ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            234777777654211 111000   0000000                    024456665543     35888998775


Q ss_pred             eEEE--EEeCCCcCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCc
Q psy226          325 SLLF--TLIGHDNWVRGVTFHPGGKYLVSCGDD-----KTLRVWDTANKR  367 (406)
Q Consensus       325 ~~~~--~~~~h~~~v~~l~~s~~g~~l~sgs~d-----~~i~vwd~~~~~  367 (406)
                      +=..  .+.........+.+  +++.++.|+.+     ..+.+||..+.+
T Consensus       227 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          227 EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             cEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            4221  11111112223333  56777778744     568888887643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.33  E-value=0.11  Score=48.90  Aligned_cols=103  Identities=10%  Similarity=0.158  Sum_probs=62.3

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE--ecc------cccCeeeEEECCC---CCEEEEEeC-------
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERA--LHG------HLDSVQDIAFDQS---GKLLVSCSA-------  168 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~--~~~------h~~~V~~l~~~~~---g~~l~sgs~-------  168 (406)
                      .....++|.|+++++++-...+.|++++..++.....  +..      .......|+|+|+   +..|..+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            3456999999999888765556798888766654322  211      2345679999995   555544432       


Q ss_pred             ------CCcEEEEeCCCC-------eEE-EEEe-cCCcceEEEEEecCCCEEEEEe
Q psy226          169 ------DMSLKLWDMSTY-------QCL-KTMQ-GHDHNVTGVAFLPNSDFVLSAS  209 (406)
Q Consensus       169 ------d~~i~vwd~~~~-------~~~-~~~~-~h~~~v~~~~~~p~~~~l~s~s  209 (406)
                            ...|.-++....       +.+ ..+. ...+....|+|.|+|.+.++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  124555554321       111 1122 1235678999999998766644

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.29  E-value=0.013  Score=51.88  Aligned_cols=220  Identities=10%  Similarity=0.103  Sum_probs=102.9

Q ss_pred             CCEEEEEe-CC-----CcEEEEeCCCCeEEEE--EecCCcceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCe---
Q psy226          160 GKLLVSCS-AD-----MSLKLWDMSTYQCLKT--MQGHDHNVTGVAFLPNSDFVLSASRD-----KTIKMWEVATGY---  223 (406)
Q Consensus       160 g~~l~sgs-~d-----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d-----~~i~iwd~~~~~---  223 (406)
                      +.+++.|+ .+     ..+.+||..+.+....  +........ ++. .++..++.|+.+     ..+.+||..+..   
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVA-SVS-LHDRIYVIGGYDGRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCE-EEE-ETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred             CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcccc-EEE-ECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence            34555555 22     3688888877653221  111111112 222 256667777754     468899987765   


Q ss_pred             EEEE--eecCCccEEEEEECCCCCEEEEEeCC-----CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccC
Q psy226          224 CVKT--LTGHREWVRQIKVSPDGTLLASCSND-----HTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAG  296 (406)
Q Consensus       224 ~~~~--~~~~~~~v~~l~~~~~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  296 (406)
                      -...  +.........+.+  ++.+++.|+.+     ..+.+||+.+..=.. +          .-.|...... ...  
T Consensus        93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~----------~~~p~~r~~~-~~~--  156 (301)
T 2vpj_A           93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM-L----------GDMQTAREGA-GLV--  156 (301)
T ss_dssp             CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE-E----------EECSSCCBSC-EEE--
T ss_pred             eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE-C----------CCCCCCcccc-eEE--
Confidence            2222  1111111122222  56677777644     356777775532111 1          0011000000 000  


Q ss_pred             CCCCCCCCCEEEEEeCC-----CcEEEEECCCCeEEEE--EeCCCcCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCC
Q psy226          297 RPPGQGGGPYLATGSRD-----KTIKLWDVGSGSLLFT--LIGHDNWVRGVTFHPGGKYLVSCGDD-----KTLRVWDTA  364 (406)
Q Consensus       297 ~~~~~~~~~~l~s~~~d-----~~i~lwd~~~~~~~~~--~~~h~~~v~~l~~s~~g~~l~sgs~d-----~~i~vwd~~  364 (406)
                          ..++.+++.|+.+     ..+.+||+.+..=...  +.........+.+  +++.++.|+.+     ..+.+||..
T Consensus       157 ----~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~  230 (301)
T 2vpj_A          157 ----VASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIR  230 (301)
T ss_dssp             ----EETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             ----EECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCC
Confidence                0024556666544     4588899877643221  1111111222232  56677777654     468899987


Q ss_pred             CCcc--ceeeccccceEEEEEEeCCCCEEEEeeCCC-----eEEEeec
Q psy226          365 NKRN--MKTLEAHSHFVTSLDFHRAHPYVVTGSVDK-----TVKVWEC  405 (406)
Q Consensus       365 ~~~~--~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg-----~v~iw~~  405 (406)
                      +.+-  +..+.........+.+  ++.+++.|+.++     .|.+||.
T Consensus       231 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          231 TDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred             CCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence            6532  2222111111112222  667778887663     4666664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.15  E-value=0.05  Score=50.00  Aligned_cols=144  Identities=17%  Similarity=0.183  Sum_probs=91.3

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCeEEEEeecC----CccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc----------
Q psy226          201 NSDFVLSASRDKTIKMWEVATGYCVKTLTGH----REWVRQIKVSPDGTLLASCSNDHTARVWSLATKET----------  266 (406)
Q Consensus       201 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~----------  266 (406)
                      +|..++.+ .++.||.-++..+...+.+...    -..+..+..+|+|.+||..+ +..|.|..+..+..          
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            44444443 3466776666533333444332    12478899999999998875 56899988873210          


Q ss_pred             ee--EEec------CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCC--eEE--------E
Q psy226          267 KA--ELRG------HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG--SLL--------F  328 (406)
Q Consensus       267 ~~--~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~--~~~--------~  328 (406)
                      ..  .+.-      ...+|..+.|+|-..               .+..|++-..|++||+||+...  .+.        +
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~---------------~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~f  173 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSY---------------RDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSF  173 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBG---------------GGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccC---------------CCCeEEEEecCCEEEEEEcccCCCCCcchhcccccc
Confidence            11  1111      245689999998532               3557899999999999999752  122        1


Q ss_pred             EEeCCCcCEEEEEEcCCCCEEEEEe--CCCeEEEE
Q psy226          329 TLIGHDNWVRGVTFHPGGKYLVSCG--DDKTLRVW  361 (406)
Q Consensus       329 ~~~~h~~~v~~l~~s~~g~~l~sgs--~d~~i~vw  361 (406)
                      .+......|.+++|.++|-.|...+  .+|-|+-.
T Consensus       174 g~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          174 GLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             CCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            1122335689999999887666644  78888754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.09  E-value=0.16  Score=46.04  Aligned_cols=66  Identities=14%  Similarity=0.128  Sum_probs=43.0

Q ss_pred             cCEEEEEEcC-------CCCEEEEEeCCCeEEEEeCCCCcccee---eccccceEEEEEEeCCCCEEEEe-eCCCeE
Q psy226          335 NWVRGVTFHP-------GGKYLVSCGDDKTLRVWDTANKRNMKT---LEAHSHFVTSLDFHRAHPYVVTG-SVDKTV  400 (406)
Q Consensus       335 ~~v~~l~~s~-------~g~~l~sgs~d~~i~vwd~~~~~~~~~---l~~h~~~v~~l~~~~~~~~l~sg-s~Dg~v  400 (406)
                      ..+..++|..       +|.++++.-..+.|...++..++....   +......+..+++.|+|.+.++. ..+|.|
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence            3577888864       477777776778888887765433222   22223468999999999876643 345544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.03  E-value=0.055  Score=47.69  Aligned_cols=219  Identities=13%  Similarity=0.186  Sum_probs=100.1

Q ss_pred             CEEEEEeCC----CcEEEEeCCCCeEEEE--EecCCcceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCeEEEE--
Q psy226          161 KLLVSCSAD----MSLKLWDMSTYQCLKT--MQGHDHNVTGVAFLPNSDFVLSASRD-----KTIKMWEVATGYCVKT--  227 (406)
Q Consensus       161 ~~l~sgs~d----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d-----~~i~iwd~~~~~~~~~--  227 (406)
                      .+++.|+.+    ..+..+|+.+.+....  +......- +++.. ++..++.|+.+     ..+.+||..+..-...  
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            344445432    3577888877653221  11111111 22222 56666777654     3588899877653322  


Q ss_pred             eecCCccEEEEEECCCCCEEEEEeCCC-----eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCC
Q psy226          228 LTGHREWVRQIKVSPDGTLLASCSNDH-----TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQG  302 (406)
Q Consensus       228 ~~~~~~~v~~l~~~~~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  302 (406)
                      +.........+.+  ++.+++.|+.++     .+.+||+.+..=.. +..          .|..... ...      ...
T Consensus        95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~----------~p~~r~~-~~~------~~~  154 (302)
T 2xn4_A           95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH-VAP----------MNTRRSS-VGV------GVV  154 (302)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE-ECC----------CSSCCBS-CEE------EEE
T ss_pred             CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee-cCC----------CCCcccC-ceE------EEE
Confidence            1111111122222  566777777553     46667765432111 100          0000000 000      000


Q ss_pred             CCCEEEEEeCC-------CcEEEEECCCCeEEEE--EeCCCcCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCcc
Q psy226          303 GGPYLATGSRD-------KTIKLWDVGSGSLLFT--LIGHDNWVRGVTFHPGGKYLVSCGDD-----KTLRVWDTANKRN  368 (406)
Q Consensus       303 ~~~~l~s~~~d-------~~i~lwd~~~~~~~~~--~~~h~~~v~~l~~s~~g~~l~sgs~d-----~~i~vwd~~~~~~  368 (406)
                      ++.+++.|+.+       ..+.+||+.+.+=...  +.........+.+  +++.++.|+.+     ..+.+||..+.+-
T Consensus       155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  232 (302)
T 2xn4_A          155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW  232 (302)
T ss_dssp             TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence            24455555432       3588899877643221  1111111222222  56777777654     3688999876532


Q ss_pred             --ceeeccccceEEEEEEeCCCCEEEEeeCCC-----eEEEeec
Q psy226          369 --MKTLEAHSHFVTSLDFHRAHPYVVTGSVDK-----TVKVWEC  405 (406)
Q Consensus       369 --~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg-----~v~iw~~  405 (406)
                        +..+......-..+.  .++.+++.|+.++     .|.+||.
T Consensus       233 ~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          233 RQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             eeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcC
Confidence              222211111111122  2667778887664     3777775

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.01  E-value=0.02  Score=47.68  Aligned_cols=142  Identities=15%  Similarity=0.056  Sum_probs=82.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE------EEEec-ccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY------ERALH-GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST  179 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~------~~~~~-~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~  179 (406)
                      ..+..++|||++.+.+.  .+|.+.-.+..+...      ...+- +--..-.++.|.++|.+-++  .||.|.-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            46779999999987777  677666555544211      11121 00112478999999987777  569888777633


Q ss_pred             CeE-------EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe------EEEEee-cCCccEEEEEECCCCC
Q psy226          180 YQC-------LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY------CVKTLT-GHREWVRQIKVSPDGT  245 (406)
Q Consensus       180 ~~~-------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~------~~~~~~-~~~~~v~~l~~~~~~~  245 (406)
                      ...       ...-.+--..+..+.|.|+|.+.+..  |+.+.-+.-.++.      ....+. +.-..-+-+.|.++|.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            110       11111122568899999999877666  7765433222111      011111 2223345577899998


Q ss_pred             EEEEEeCCCeE
Q psy226          246 LLASCSNDHTA  256 (406)
Q Consensus       246 ~l~s~~~d~~v  256 (406)
                      +.+..  ++.+
T Consensus       195 l~~v~--~g~~  203 (236)
T 1tl2_A          195 LFGVQ--GGKF  203 (236)
T ss_dssp             EEEEE--TTEE
T ss_pred             EEEEe--CCeE
Confidence            77766  6643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.98  E-value=0.055  Score=47.95  Aligned_cols=143  Identities=11%  Similarity=0.051  Sum_probs=71.1

Q ss_pred             CCCEEEEEeC----CCcEEEEEcCCCcEEEEecccccCe-eeEEECCCCCEEEEEeC----C-----CcEEEEeCCCCeE
Q psy226          117 VFSLMASCSE----DATIRLWDYETGEYERALHGHLDSV-QDIAFDQSGKLLVSCSA----D-----MSLKLWDMSTYQC  182 (406)
Q Consensus       117 ~~~~latgs~----dg~v~vwd~~~~~~~~~~~~h~~~V-~~l~~~~~g~~l~sgs~----d-----~~i~vwd~~~~~~  182 (406)
                      ++.+++.|+.    -..+.+||..+++....-....... .+++. .++.+++.|+.    +     ..+.+||..+.+.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            3456666653    2468899988877554311111111 12222 25666666665    2     3588889877643


Q ss_pred             EEE--EecCCcceEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCeEEEE--eecCCccEEEEEECCCCCEEEEEeCC
Q psy226          183 LKT--MQGHDHNVTGVAFLPNSDFVLSASRD-----KTIKMWEVATGYCVKT--LTGHREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       183 ~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                      ...  +.........+.+  ++..++.|+.+     ..+.+||..+..-...  +.........+.+  ++.+++.|+.+
T Consensus       103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  178 (308)
T 1zgk_A          103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD  178 (308)
T ss_dssp             EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence            221  1111112222222  56666666543     3578888877643221  1111111122222  56667777654


Q ss_pred             -----CeEEEEeCCCc
Q psy226          254 -----HTARVWSLATK  264 (406)
Q Consensus       254 -----~~v~vwd~~~~  264 (406)
                           ..+.+||+.+.
T Consensus       179 ~~~~~~~~~~yd~~~~  194 (308)
T 1zgk_A          179 GTNRLNSAECYYPERN  194 (308)
T ss_dssp             SSCBCCCEEEEETTTT
T ss_pred             CCCcCceEEEEeCCCC
Confidence                 34777776543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.97  E-value=0.14  Score=45.39  Aligned_cols=139  Identities=8%  Similarity=0.023  Sum_probs=69.3

Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEE-EecccccCeeeEEECCCCCEEEEEeC-----C------CcEEEEeCCCCeEEEEEe
Q psy226          120 LMASCSEDATIRLWDYETGEYER-ALHGHLDSVQDIAFDQSGKLLVSCSA-----D------MSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       120 ~latgs~dg~v~vwd~~~~~~~~-~~~~h~~~V~~l~~~~~g~~l~sgs~-----d------~~i~vwd~~~~~~~~~~~  187 (406)
                      +++.|+  ..+.+||..+++... .+..............++.+++.|+.     .      ..+.+||..+.+-. .+.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECC
Confidence            344455  578999999887643 11111122222233456777777773     1      12778888776532 221


Q ss_pred             cCCcc--eEEEEEecCCCEEEEEeCC--------CcEEEEEcCCCeEEEE--eecCCccEEEEEECCCCCEEEEEeC-C-
Q psy226          188 GHDHN--VTGVAFLPNSDFVLSASRD--------KTIKMWEVATGYCVKT--LTGHREWVRQIKVSPDGTLLASCSN-D-  253 (406)
Q Consensus       188 ~h~~~--v~~~~~~p~~~~l~s~s~d--------~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~s~~~-d-  253 (406)
                      ....+  -.+++.. ++..++.|+.+        ..+.+||..+..-...  +.........+.  .++++++.|+. + 
T Consensus        84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~  160 (315)
T 4asc_A           84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSD  160 (315)
T ss_dssp             CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTT
T ss_pred             CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCC
Confidence            11111  0112222 55566666632        4588899887643221  111111111222  35566677765 2 


Q ss_pred             ----CeEEEEeCCCc
Q psy226          254 ----HTARVWSLATK  264 (406)
Q Consensus       254 ----~~v~vwd~~~~  264 (406)
                          ..+.+||+.+.
T Consensus       161 ~~~~~~~~~yd~~~~  175 (315)
T 4asc_A          161 RKCLNKMCVYDPKKF  175 (315)
T ss_dssp             SCBCCCEEEEETTTT
T ss_pred             CcccceEEEEeCCCC
Confidence                35777777653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.97  E-value=0.097  Score=46.18  Aligned_cols=217  Identities=10%  Similarity=0.096  Sum_probs=103.2

Q ss_pred             CEEEEEeC--CCcEEEEeCCCCeEEEE--EecCCcceEEEEEecCCCEEEEEeCC----CcEEEEEcCCCeEEEEe--ec
Q psy226          161 KLLVSCSA--DMSLKLWDMSTYQCLKT--MQGHDHNVTGVAFLPNSDFVLSASRD----KTIKMWEVATGYCVKTL--TG  230 (406)
Q Consensus       161 ~~l~sgs~--d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d----~~i~iwd~~~~~~~~~~--~~  230 (406)
                      .+++.|+.  ...+.+||..+.+-...  +.........+.  -++..++.|+.+    ..+.+||..+..-...-  ..
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34555654  35788899887653221  111111122222  256666777755    56888998876533221  11


Q ss_pred             CCccEEEEEECCCCCEEEEEeCC------CeEEEEeCCCccceeE--EecCCceEEEEEeCCCCCccccccccCCCCCCC
Q psy226          231 HREWVRQIKVSPDGTLLASCSND------HTARVWSLATKETKAE--LRGHDHTVECVAWAPGVASESISEAAGRPPGQG  302 (406)
Q Consensus       231 ~~~~v~~l~~~~~~~~l~s~~~d------~~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  302 (406)
                      .......+.+  ++.+++.|+.+      ..+.+||+.+..=...  +......-..+.                    .
T Consensus        91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--------------------~  148 (306)
T 3ii7_A           91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--------------------A  148 (306)
T ss_dssp             CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--------------------E
T ss_pred             cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--------------------E
Confidence            1111122222  56677777755      4577788765421110  000000000000                    0


Q ss_pred             CCCEEEEEeC---------CCcEEEEECCCCeEEEE--EeCCCcCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCC
Q psy226          303 GGPYLATGSR---------DKTIKLWDVGSGSLLFT--LIGHDNWVRGVTFHPGGKYLVSCGDD-----KTLRVWDTANK  366 (406)
Q Consensus       303 ~~~~l~s~~~---------d~~i~lwd~~~~~~~~~--~~~h~~~v~~l~~s~~g~~l~sgs~d-----~~i~vwd~~~~  366 (406)
                      ++.+++.|+.         -..+.+||..+.+=...  +......-..+.+  +++.++.|+.+     ..+.+||..+.
T Consensus       149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            2445555543         34588899877643221  1111111122222  56666776643     45788998765


Q ss_pred             c--cceeeccccceEEEEEEeCCCCEEEEeeCC-----CeEEEeec
Q psy226          367 R--NMKTLEAHSHFVTSLDFHRAHPYVVTGSVD-----KTVKVWEC  405 (406)
Q Consensus       367 ~--~~~~l~~h~~~v~~l~~~~~~~~l~sgs~D-----g~v~iw~~  405 (406)
                      +  .+..+........++.+  ++.+++.|+.+     ..+.+||.
T Consensus       227 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          227 EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred             cEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence            3  22222211111122223  66778888855     35677764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.92  E-value=0.22  Score=44.86  Aligned_cols=144  Identities=19%  Similarity=0.156  Sum_probs=84.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE--e----cccccCeeeEEECCC---CCEEEEE---eCCCcE
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERA--L----HGHLDSVQDIAFDQS---GKLLVSC---SADMSL  172 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~--~----~~h~~~V~~l~~~~~---g~~l~sg---s~d~~i  172 (406)
                      --..-..++|.|++.++++--..|.|++++..+++....  +    .........|+|+|+   +..|...   ..+..|
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            344567999999999888876689999998766654221  1    122456789999995   3444432   234455


Q ss_pred             EEEeCCC----------CeEE-EEEe-cCCcceEEEEEecCCCEEEEEeC-------------CCcEEEEEcCCC-----
Q psy226          173 KLWDMST----------YQCL-KTMQ-GHDHNVTGVAFLPNSDFVLSASR-------------DKTIKMWEVATG-----  222 (406)
Q Consensus       173 ~vwd~~~----------~~~~-~~~~-~h~~~v~~~~~~p~~~~l~s~s~-------------d~~i~iwd~~~~-----  222 (406)
                      .-|.+..          .+.+ ..+. +..+.-..|.|.|+|.+.++.+.             -+.|.-.+....     
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            5565543          1221 1222 22345567999999987776432             234433343221     


Q ss_pred             ----eEEEEeecCCccEEEEEECCCCCEEEEE
Q psy226          223 ----YCVKTLTGHREWVRQIKVSPDGTLLASC  250 (406)
Q Consensus       223 ----~~~~~~~~~~~~v~~l~~~~~~~~l~s~  250 (406)
                          ..+. -.+|+. ...++|+|+|.++++=
T Consensus       190 Pf~~~~i~-a~G~RN-p~Gla~dp~G~L~~~d  219 (347)
T 3das_A          190 PFPGSPVY-SYGHRN-VQGLAWDDKQRLFASE  219 (347)
T ss_dssp             SSTTCCEE-EBCCSB-CCEEEECTTCCEEEEE
T ss_pred             CCCCCeEE-eeCCCC-cceEEECCCCCEEEEe
Confidence                1111 124543 4568999988766553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.87  E-value=0.21  Score=45.19  Aligned_cols=62  Identities=15%  Similarity=0.318  Sum_probs=42.8

Q ss_pred             cCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-Ccc--ceeeccccceEEEEEEeC-CCCEEEEeeCC
Q psy226          335 NWVRGVTFHPGGKYLVSCG-DDKTLRVWDTAN-KRN--MKTLEAHSHFVTSLDFHR-AHPYVVTGSVD  397 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs-~d~~i~vwd~~~-~~~--~~~l~~h~~~v~~l~~~~-~~~~l~sgs~D  397 (406)
                      ...+.++||||+++|+.+. ..+.|+.|++.. +..  .+.+. .......++.++ +|.+.+++..+
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence            3578999999998876654 578999999853 221  22332 245678889999 58887766544

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.35  Score=43.34  Aligned_cols=197  Identities=10%  Similarity=0.062  Sum_probs=107.7

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEeccc-ccCeeeEEE---CCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEec----C
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHGH-LDSVQDIAF---DQSGKLLVSC-SADMSLKLWDMSTYQCLKTMQG----H  189 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~h-~~~V~~l~~---~~~g~~l~sg-s~d~~i~vwd~~~~~~~~~~~~----h  189 (406)
                      .+++.++.||.|.-.|..+|+..-.+... ..++....-   ..++..++.. +.||.+..++..++.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47889999999999999999988887653 122221110   0123334343 5899999999988754433321    1


Q ss_pred             CcceEE---EEE-e----cCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCc--c-----EEEEEEC-----CCCCEEEE
Q psy226          190 DHNVTG---VAF-L----PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE--W-----VRQIKVS-----PDGTLLAS  249 (406)
Q Consensus       190 ~~~v~~---~~~-~----p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~--~-----v~~l~~~-----~~~~~l~s  249 (406)
                      ..++..   ... .    ..+..+++|+.++.+...|..+|+.+..+.....  .     ..|....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            112221   000 0    1456889999999999999999999988864321  0     0011110     12346666


Q ss_pred             EeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE
Q psy226          250 CSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF  328 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~  328 (406)
                      +..+..+.+.+ ++++ +-       ....-.|.+......+  .+ ......++.+ +.++.||.|.-+|..+|..+.
T Consensus       171 g~~~y~v~~~~-~sG~-~W-------~~~~s~~~~~~~~~~~--~~-~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SY-------NVTYSTWQQNVLDVPL--AL-QNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CC-------CCEEEEEECCTTTHHH--HT-TCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eE-------EEeccccccccccccc--cc-ccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            66666666665 2322 10       1111123222111000  00 0000112444 457889999999988888765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.62  E-value=0.32  Score=44.79  Aligned_cols=141  Identities=17%  Similarity=0.196  Sum_probs=92.6

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEeccc----ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe-----------
Q psy226          117 VFSLMASCSEDATIRLWDYETGEYERALHGH----LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ-----------  181 (406)
Q Consensus       117 ~~~~latgs~dg~v~vwd~~~~~~~~~~~~h----~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~-----------  181 (406)
                      ++.-++.+ .++.||.-++..+..-+.++-.    -+.|..+..+|+|++||..+ +..|.|-.+..+.           
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence            44444443 2467777776643322233321    23688899999999999875 4578888776211           


Q ss_pred             -EEEEEec------CCcceEEEEEecC---CCEEEEEeCCCcEEEEEcCCCe--EEEEee---------cCCccEEEEEE
Q psy226          182 -CLKTMQG------HDHNVTGVAFLPN---SDFVLSASRDKTIKMWEVATGY--CVKTLT---------GHREWVRQIKV  240 (406)
Q Consensus       182 -~~~~~~~------h~~~v~~~~~~p~---~~~l~s~s~d~~i~iwd~~~~~--~~~~~~---------~~~~~v~~l~~  240 (406)
                       ..+.+.-      ...+|..+.|+|-   +..|++-..|++|++||+....  .. .+.         .....|.+++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence             1223322      2467999999995   4689999999999999997532  11 222         12256889999


Q ss_pred             CCCCCEEEEEe--CCCeEEEEe
Q psy226          241 SPDGTLLASCS--NDHTARVWS  260 (406)
Q Consensus       241 ~~~~~~l~s~~--~d~~v~vwd  260 (406)
                      .+++-.|...+  .+|.|+-..
T Consensus       188 g~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             CTTSSCEEEEECTTSCEEEEES
T ss_pred             cCCCcEEEEEecCCCCCEEEEC
Confidence            99888777755  778887653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.52  E-value=0.38  Score=42.55  Aligned_cols=133  Identities=8%  Similarity=0.065  Sum_probs=64.6

Q ss_pred             cEEEEEcCCCcEEEE-ecccccCeeeEEECCCCCEEEEEeC----CC-------cEEEEeCCCCeEEEE--EecCCcceE
Q psy226          129 TIRLWDYETGEYERA-LHGHLDSVQDIAFDQSGKLLVSCSA----DM-------SLKLWDMSTYQCLKT--MQGHDHNVT  194 (406)
Q Consensus       129 ~v~vwd~~~~~~~~~-~~~h~~~V~~l~~~~~g~~l~sgs~----d~-------~i~vwd~~~~~~~~~--~~~h~~~v~  194 (406)
                      .+..||..+++.... +..............++.+++.|+.    ++       .+.++|..+.+-...  +....... 
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-  103 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-  103 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-
Confidence            378899888876542 1111112222233456777777773    12       177788876553221  11111111 


Q ss_pred             EEEEecCCCEEEEEeCC-------CcEEEEEcCCCeEEEEeecCCcc-EEEEEECCCCCEEEEEeC------CCeEEEEe
Q psy226          195 GVAFLPNSDFVLSASRD-------KTIKMWEVATGYCVKTLTGHREW-VRQIKVSPDGTLLASCSN------DHTARVWS  260 (406)
Q Consensus       195 ~~~~~p~~~~l~s~s~d-------~~i~iwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~s~~~------d~~v~vwd  260 (406)
                      +++.. ++..++.|+.+       ..+.+||..+..-...-...... -.+++. .++.+++.|+.      -..+.+||
T Consensus       104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd  181 (318)
T 2woz_A          104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYN  181 (318)
T ss_dssp             EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEE
T ss_pred             ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEc
Confidence            22222 56666667654       24778888776433221111000 011222 35666666653      23477888


Q ss_pred             CCCc
Q psy226          261 LATK  264 (406)
Q Consensus       261 ~~~~  264 (406)
                      +.+.
T Consensus       182 ~~~~  185 (318)
T 2woz_A          182 PKKG  185 (318)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            7654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.51  E-value=1.1  Score=47.41  Aligned_cols=288  Identities=13%  Similarity=0.110  Sum_probs=144.0

Q ss_pred             CCCeEEEEEcCC------CCEEEEEeC-CCcEEEEEcCCCcEEEEec-ccccCeeeEEEC--CCCCEEEEEeCCCcEEEE
Q psy226          106 RSPVIKVIFHPV------FSLMASCSE-DATIRLWDYETGEYERALH-GHLDSVQDIAFD--QSGKLLVSCSADMSLKLW  175 (406)
Q Consensus       106 ~~~V~~v~~~p~------~~~latgs~-dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~--~~g~~l~sgs~d~~i~vw  175 (406)
                      ...|.|+++.|.      ..++|.|.+ |++|+|+++.+.+...... +-.....++.+.  ....+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999864      369999997 9999999998765443221 111233444332  234578899999987655


Q ss_pred             eC--CCCeEEE---EEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccE-EEEEECCCC--CEE
Q psy226          176 DM--STYQCLK---TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWV-RQIKVSPDG--TLL  247 (406)
Q Consensus       176 d~--~~~~~~~---~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~--~~l  247 (406)
                      .+  .+++...   ...| ..++.=..+...+..-+-+..+....++--........+.  -..+ ....|+...  .-+
T Consensus       633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~--~~~v~~~~~F~se~~~~g~  709 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVN--LKEVNYMCPLNSDGYPDSL  709 (1158)
T ss_dssp             EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBS--SSCCCEEEEECCSSSTTEE
T ss_pred             EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccC--hHHhceEeccCcccCCCcE
Confidence            44  4554322   2233 3355444444344433333335555555433222211111  1122 223353321  234


Q ss_pred             EEEeCCCeEEEEeCCCccceeE-EecCCceEEEEEeCCCCCcccccccc-------C--CC-------------------
Q psy226          248 ASCSNDHTARVWSLATKETKAE-LRGHDHTVECVAWAPGVASESISEAA-------G--RP-------------------  298 (406)
Q Consensus       248 ~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~-------~--~~-------------------  298 (406)
                      +. ..++.++|..+........ -..-...+..++++|....-.+....       .  .+                   
T Consensus       710 v~-~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1158)
T 3ei3_A          710 AL-ANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL  788 (1158)
T ss_dssp             EE-ECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred             EE-EcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence            43 3355688887754322111 11122345566666532210000000       0  00                   


Q ss_pred             -------CCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC-CCcCEEEEE---EcCC-CCEEEEEe----------CCC
Q psy226          299 -------PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG-HDNWVRGVT---FHPG-GKYLVSCG----------DDK  356 (406)
Q Consensus       299 -------~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~-h~~~v~~l~---~s~~-g~~l~sgs----------~d~  356 (406)
                             ....-|...    .-+.|++.|-.+.+.+..+.- ....+.+++   |..+ ..+|+.|.          ..|
T Consensus       789 ~~~~~~~~~~~~g~~~----~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~G  864 (1158)
T 3ei3_A          789 FSSSTAPHETSFGEEV----EVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQG  864 (1158)
T ss_dssp             C----------CCCEE----EEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCE
T ss_pred             ccccccCchhhcCCce----eeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCce
Confidence                   000001111    124589999888776655432 122344443   4332 46888775          358


Q ss_pred             eEEEEeCCCCccceee--ccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          357 TLRVWDTANKRNMKTL--EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       357 ~i~vwd~~~~~~~~~l--~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      .|+++++..++ ++.+  ....+.|++|+-- .|.+|| | ...+|++|++
T Consensus       865 ri~vf~v~~~k-L~lv~~~~v~g~v~al~~~-~g~Lla-~-ig~~l~vy~l  911 (1158)
T 3ei3_A          865 RIVVFQYSDGK-LQTVAEKEVKGAVYSMVEF-NGKLLA-S-INSTVRLYEW  911 (1158)
T ss_dssp             EEEEEEEETTE-EEEEEEEEESSCEEEEEEE-TTEEEE-E-ETTEEEEEEE
T ss_pred             EEEEEEEECCE-EEEEEEEEcCCcCEEEeee-CCEEEE-E-cCCEEEEEEC
Confidence            99999986432 2222  1235678887743 344444 3 3478999986

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.43  E-value=1.2  Score=47.06  Aligned_cols=149  Identities=12%  Similarity=0.104  Sum_probs=84.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCC------CCEEEEEeC-CCcEEEEeCCC
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQS------GKLLVSCSA-DMSLKLWDMST  179 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~------g~~l~sgs~-d~~i~vwd~~~  179 (406)
                      .|.+.+.+.  .+++.++ ++.+.++++.++++....+ .-...|.|+++.+.      +.+++.|.. |++++|+++.+
T Consensus       515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~  591 (1158)
T 3ei3_A          515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS  591 (1158)
T ss_dssp             CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence            455555543  3555554 5778888877665432211 12457999999763      469999996 99999999988


Q ss_pred             CeEEEEEecC-CcceEEEEEec--CCCEEEEEeCCCcEEEEEc--CCCeEEEE---eecCCccEEEEEECCCCCEEEEEe
Q psy226          180 YQCLKTMQGH-DHNVTGVAFLP--NSDFVLSASRDKTIKMWEV--ATGYCVKT---LTGHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       180 ~~~~~~~~~h-~~~v~~~~~~p--~~~~l~s~s~d~~i~iwd~--~~~~~~~~---~~~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                      .+.+....-. .....++.+..  ...+|..|-.||.+.-+.+  .+|.....   +-| ..++.-..+...|..-+-+.
T Consensus       592 l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~  670 (1158)
T 3ei3_A          592 FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFAC  670 (1158)
T ss_dssp             CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEE
T ss_pred             CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEE
Confidence            7665433221 22344454432  2347888999998765544  44543221   223 33444444444443322333


Q ss_pred             CCCeEEEEe
Q psy226          252 NDHTARVWS  260 (406)
Q Consensus       252 ~d~~v~vwd  260 (406)
                      .+....++.
T Consensus       671 s~rp~liy~  679 (1158)
T 3ei3_A          671 SDRPTVIYS  679 (1158)
T ss_dssp             SSSCEEEEE
T ss_pred             CCCCEEEEE
Confidence            344444443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.26  E-value=0.71  Score=42.63  Aligned_cols=253  Identities=11%  Similarity=0.131  Sum_probs=153.8

Q ss_pred             CCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEE
Q psy226          126 EDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFV  205 (406)
Q Consensus       126 ~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  205 (406)
                      .+..|.|-|+.++....+-.   -..-+.-.+|..+.||-=. ..++.|+|+++.+.++...-.+ .|.-=.|-.+. .|
T Consensus        46 ~~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l  119 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TV  119 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EE
T ss_pred             CCCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eE
Confidence            34478888988765332111   1122445577777776654 6799999999988887776555 44444555443 33


Q ss_pred             EEEeCCCcEEEEEcCC-CeEEEEeecCC----ccEEEEEECCCCCEEEEEeC-------CCeEEEEeCCCccceeEEecC
Q psy226          206 LSASRDKTIKMWEVAT-GYCVKTLTGHR----EWVRQIKVSPDGTLLASCSN-------DHTARVWSLATKETKAELRGH  273 (406)
Q Consensus       206 ~s~s~d~~i~iwd~~~-~~~~~~~~~~~----~~v~~l~~~~~~~~l~s~~~-------d~~v~vwd~~~~~~~~~~~~~  273 (406)
                      +-. .+..|.-|++.. ..+.+.+.-|.    ..|..-..+++.++++..+-       .|.+.+|..+.. ..+.+.+|
T Consensus       120 ~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh  197 (494)
T 1bpo_A          120 ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH  197 (494)
T ss_dssp             EEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred             EEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence            332 356799999864 34566665553    45777778899998875542       367788887643 45567788


Q ss_pred             CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCC---CcEEEEECCCC---e-----EEEE--Ee--CCCcCEE
Q psy226          274 DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRD---KTIKLWDVGSG---S-----LLFT--LI--GHDNWVR  338 (406)
Q Consensus       274 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~lwd~~~~---~-----~~~~--~~--~h~~~v~  338 (406)
                      ...-..+.......               ....+.-+...   +.+.|-++...   .     ....  +.  ...+...
T Consensus       198 aa~F~~~~~~g~~~---------------~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv  262 (494)
T 1bpo_A          198 AASFAQFKMEGNAE---------------ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  262 (494)
T ss_dssp             EEEEEEEECTTCSS---------------EEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred             eeeeEEEecCCCCC---------------CceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence            76554444321110               01123333332   57888887432   1     1111  11  1244567


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEE
Q psy226          339 GVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVK  401 (406)
Q Consensus       339 ~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~  401 (406)
                      ++..|+.-..++.-..-|.|+++|+.++.++..-.--...|..-+.+....-++.-...|.|.
T Consensus       263 amqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl  325 (494)
T 1bpo_A          263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  325 (494)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred             EEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence            788888888888889999999999999998765544444555555555444444444666543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.23  E-value=0.22  Score=43.97  Aligned_cols=219  Identities=11%  Similarity=0.084  Sum_probs=100.4

Q ss_pred             CCCEEEEEeCC----CcEEEEeCCCCeEEEE--EecCCcceEEEEEecCCCEEEEEeC----C-----CcEEEEEcCCCe
Q psy226          159 SGKLLVSCSAD----MSLKLWDMSTYQCLKT--MQGHDHNVTGVAFLPNSDFVLSASR----D-----KTIKMWEVATGY  223 (406)
Q Consensus       159 ~g~~l~sgs~d----~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~----d-----~~i~iwd~~~~~  223 (406)
                      ++.+++.|+.+    ..+.+||..+.+....  +....... +++.. ++.+++.|+.    +     ..+.+||..+..
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            34555555531    3578888876553221  11111111 22222 5566666665    2     467888887764


Q ss_pred             EEEE--eecCCccEEEEEECCCCCEEEEEeCC-----CeEEEEeCCCcccee--EEecCCceEEEEEeCCCCCccccccc
Q psy226          224 CVKT--LTGHREWVRQIKVSPDGTLLASCSND-----HTARVWSLATKETKA--ELRGHDHTVECVAWAPGVASESISEA  294 (406)
Q Consensus       224 ~~~~--~~~~~~~v~~l~~~~~~~~l~s~~~d-----~~v~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~  294 (406)
                      -...  +.........+.+  ++++++.|+.+     ..+.+||+.+..=..  .+......-..+.+            
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~------------  167 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL------------  167 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE------------
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE------------
Confidence            3221  1111111122222  56666666643     346677765432110  00000000000000            


Q ss_pred             cCCCCCCCCCCEEEEEeCC-----CcEEEEECCCCeEEEE--EeCCCcCEEEEEEcCCCCEEEEEeCC-----CeEEEEe
Q psy226          295 AGRPPGQGGGPYLATGSRD-----KTIKLWDVGSGSLLFT--LIGHDNWVRGVTFHPGGKYLVSCGDD-----KTLRVWD  362 (406)
Q Consensus       295 ~~~~~~~~~~~~l~s~~~d-----~~i~lwd~~~~~~~~~--~~~h~~~v~~l~~s~~g~~l~sgs~d-----~~i~vwd  362 (406)
                              ++.+++.|+.+     ..+.+||+.+.+=...  +.........+.+  +++.++.|+.+     ..+.+||
T Consensus       168 --------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd  237 (308)
T 1zgk_A          168 --------NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYD  237 (308)
T ss_dssp             --------TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEE
T ss_pred             --------CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEe
Confidence                    24455666544     4588889876542211  1111111222333  56677777654     5688999


Q ss_pred             CCCCcc--ceeeccccceEEEEEEeCCCCEEEEeeCCC-----eEEEeec
Q psy226          363 TANKRN--MKTLEAHSHFVTSLDFHRAHPYVVTGSVDK-----TVKVWEC  405 (406)
Q Consensus       363 ~~~~~~--~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg-----~v~iw~~  405 (406)
                      +.+.+-  +..+.........+.+  ++.+++.|+.++     .+.+||.
T Consensus       238 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          238 VETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             TTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET
T ss_pred             CCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcC
Confidence            876532  2222111111112222  567778887653     4666664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.20  E-value=0.68  Score=41.82  Aligned_cols=192  Identities=16%  Similarity=0.249  Sum_probs=108.2

Q ss_pred             CeeeEEECCCCCEEEEE------------eCCCcEEEEeCCC--CeEE-EEEec-----CCcceEEEEEec--CCC-EEE
Q psy226          150 SVQDIAFDQSGKLLVSC------------SADMSLKLWDMST--YQCL-KTMQG-----HDHNVTGVAFLP--NSD-FVL  206 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sg------------s~d~~i~vwd~~~--~~~~-~~~~~-----h~~~v~~~~~~p--~~~-~l~  206 (406)
                      ...+++..++|..++++            ..+|.|.++|..+  .+.. -.+.+     ..-....+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34466667766554444            2689999999873  2221 12222     123567787766  343 454


Q ss_pred             EEe-C--CCcEEEEEcCCC--e--EEEEeecC-CccEEEEEECCCCCEEEEEeC-----------------CCeEEEEeC
Q psy226          207 SAS-R--DKTIKMWEVATG--Y--CVKTLTGH-REWVRQIKVSPDGTLLASCSN-----------------DHTARVWSL  261 (406)
Q Consensus       207 s~s-~--d~~i~iwd~~~~--~--~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~-----------------d~~v~vwd~  261 (406)
                      ++. .  +.+|.+|++..+  .  .+..+.+. -...+.+.+.++|.+.++...                 .|.|..+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            442 2  467888877543  1  23334332 235788999999987777541                 244555554


Q ss_pred             CCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEE-eCCCcEEEEECCC-CeE--EEEEeCCCcCE
Q psy226          262 ATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATG-SRDKTIKLWDVGS-GSL--LFTLIGHDNWV  337 (406)
Q Consensus       262 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~lwd~~~-~~~--~~~~~~h~~~v  337 (406)
                        .+ ...+...-.....++|+|+                  +..|+.+ +..+.|..|++.. +..  ...+ ......
T Consensus       211 --~~-~~~~~~~l~~pNGia~spD------------------g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~P  268 (355)
T 3sre_A          211 --ND-VRVVAEGFDFANGINISPD------------------GKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLV  268 (355)
T ss_dssp             --TC-CEEEEEEESSEEEEEECTT------------------SSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEE
T ss_pred             --Ce-EEEeecCCcccCcceECCC------------------CCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCC
Confidence              22 2222222334577888884                  4445444 4577899999853 332  1223 234567


Q ss_pred             EEEEEcC-CCCEEEEEeCC-CeEEEEeC
Q psy226          338 RGVTFHP-GGKYLVSCGDD-KTLRVWDT  363 (406)
Q Consensus       338 ~~l~~s~-~g~~l~sgs~d-~~i~vwd~  363 (406)
                      -.+++++ +|++.+++..+ +.|..||.
T Consensus       269 DGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          269 DNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             ceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            7899999 59988766544 34444443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.17  E-value=0.69  Score=41.63  Aligned_cols=104  Identities=22%  Similarity=0.241  Sum_probs=62.9

Q ss_pred             ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEE--EEE----ecCCcceEEEEEecC---CCEEEEE-e--CCCcEE
Q psy226          148 LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCL--KTM----QGHDHNVTGVAFLPN---SDFVLSA-S--RDKTIK  215 (406)
Q Consensus       148 ~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~--~~~----~~h~~~v~~~~~~p~---~~~l~s~-s--~d~~i~  215 (406)
                      ......|+|.|+|.++++--..|.|++++..+++..  ..+    .........|+|+|+   +..|... +  .++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            345678999999997777655899999987655432  111    122456789999995   3444332 2  344555


Q ss_pred             EEEcCCC----------eEE-EEee-cCCccEEEEEECCCCCEEEEEe
Q psy226          216 MWEVATG----------YCV-KTLT-GHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       216 iwd~~~~----------~~~-~~~~-~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                      -|....+          +.+ ..+. +....-..|.|.|||.+.++.+
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            5555431          111 1121 1122346799999998888765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.12  E-value=0.66  Score=44.21  Aligned_cols=262  Identities=12%  Similarity=0.146  Sum_probs=135.7

Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEEeccccc-------------Ce------------e--eEEEC---CCCCEEEEEe-C
Q psy226          120 LMASCSEDATIRLWDYETGEYERALHGHLD-------------SV------------Q--DIAFD---QSGKLLVSCS-A  168 (406)
Q Consensus       120 ~latgs~dg~v~vwd~~~~~~~~~~~~h~~-------------~V------------~--~l~~~---~~g~~l~sgs-~  168 (406)
                      .+.||+..|.|+|+-+.+++.++.+.-.+.             .|            .  .+.+.   .||++|..-. .
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            467899999999999999998877632110             01            1  12222   2567777765 3


Q ss_pred             CCcEEEEeCCCCeEEEEEec-CCcceEEEEEe--cCCCEEEEEeC-------CCcEEEEEcCCCeEEEE---eecCCccE
Q psy226          169 DMSLKLWDMSTYQCLKTMQG-HDHNVTGVAFL--PNSDFVLSASR-------DKTIKMWEVATGYCVKT---LTGHREWV  235 (406)
Q Consensus       169 d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--p~~~~l~s~s~-------d~~i~iwd~~~~~~~~~---~~~~~~~v  235 (406)
                      ...|-..++...++-+.+.- ....+.+++|.  |+..|++.++.       ||..  .++........   +.+.+-.|
T Consensus       152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y~~f~~iD~~tm~v  229 (638)
T 3sbq_A          152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENSYTMYNAIDAETMEM  229 (638)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTEEEEEEEEETTTCSE
T ss_pred             CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhhceEEEEEcCCccEE
Confidence            45677778888888766654 34578888886  78889888775       3331  10011101011   11111111


Q ss_pred             -E---------EEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCC
Q psy226          236 -R---------QIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGP  305 (406)
Q Consensus       236 -~---------~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (406)
                       .         .+..+++|.+.++.+...       +....+..+... ..=..+.|.-.    .+....      ..|+
T Consensus       230 ~~Qv~v~gnld~~~~~~~g~~af~t~yNs-------E~~~~l~em~~~-e~D~~~vfn~~----~ie~~v------k~G~  291 (638)
T 3sbq_A          230 AFQVIVDGNLDNTDADYTGRFAAATCYNS-------EKAFDLGGMMRN-ERDWVVVFDIH----AVEAAV------KAGD  291 (638)
T ss_dssp             EEEEEESSCCCCEEECSSSSEEEEEESCT-------TCCSSHHHHTCS-SCEEEEEEEHH----HHHHHH------HTTC
T ss_pred             EEEEEcCCChhhcCCCCCCCEEEEeeecc-------ccCcChhhcCcc-cccEEEEecHH----HHHHHH------hcCC
Confidence             1         122234444444333211       110001011000 00011111100    000000      0122


Q ss_pred             EEEEEeCCC-cEEEEECCC----CeEEEEEeCCCcCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcc-----------
Q psy226          306 YLATGSRDK-TIKLWDVGS----GSLLFTLIGHDNWVRGVTFHPGGKYLVSCG-DDKTLRVWDTANKRN-----------  368 (406)
Q Consensus       306 ~l~s~~~d~-~i~lwd~~~----~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs-~d~~i~vwd~~~~~~-----------  368 (406)
                      +-.   -.+ .|.+.|.+.    +..+..+..-......+.++|||++++.++ .+.++.|+|+.....           
T Consensus       292 ~~~---~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~  368 (638)
T 3sbq_A          292 FIT---LGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRD  368 (638)
T ss_dssp             CBC---CTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGG
T ss_pred             eEE---ECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCccc
Confidence            111   121 367778765    333323333334456789999999987665 578999999864211           


Q ss_pred             --ceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          369 --MKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       369 --~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                        +...+. .-.....+|+++|.-..|--.|..|.-|++
T Consensus       369 ~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvvkWni  406 (638)
T 3sbq_A          369 VIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVVKWNM  406 (638)
T ss_dssp             GEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             ceEeeccC-CCcccEEEECCCCceEeeeeecceEEEEec
Confidence              111221 223577899999955566679999999985

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.07  E-value=0.17  Score=45.77  Aligned_cols=91  Identities=10%  Similarity=0.031  Sum_probs=45.5

Q ss_pred             CCCEEEEEeC-CCcEEEEEcCC--CcEEEEeccc---ccCeeeEEECCCCCEEEEEeC-C---------CcEEEEeCCCC
Q psy226          117 VFSLMASCSE-DATIRLWDYET--GEYERALHGH---LDSVQDIAFDQSGKLLVSCSA-D---------MSLKLWDMSTY  180 (406)
Q Consensus       117 ~~~~latgs~-dg~v~vwd~~~--~~~~~~~~~h---~~~V~~l~~~~~g~~l~sgs~-d---------~~i~vwd~~~~  180 (406)
                      ++.+++.|+. ...+.+||..+  .+....-...   ...-.++.+  ++.+++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            5566666654 35688889874  4443221111   111122222  4666666665 2         46888998876


Q ss_pred             eEEEEEecC--Cc-ceEEEEEecCCCEEEEEeCC
Q psy226          181 QCLKTMQGH--DH-NVTGVAFLPNSDFVLSASRD  211 (406)
Q Consensus       181 ~~~~~~~~h--~~-~v~~~~~~p~~~~l~s~s~d  211 (406)
                      +-.. +...  .. .-.+++. .++.+++.|+.+
T Consensus        97 ~W~~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVK-LMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             EEEE-CSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             cEEE-CCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            5322 2111  11 1112222 466777777754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.94  E-value=1  Score=41.61  Aligned_cols=244  Identities=12%  Similarity=0.136  Sum_probs=140.7

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEecCC
Q psy226          112 VIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST-YQCLKTMQGHD  190 (406)
Q Consensus       112 v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~-~~~~~~~~~h~  190 (406)
                      ...||..+.+|-=. ..++.|+|+++....+...- ...|.--.|-.+. .|+-.+ +..|.-|++.. ..+.+.+..|.
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~  146 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecch
Confidence            45688888777655 68999999999877666553 3456666665443 344332 46799999964 34555555543


Q ss_pred             ----cceEEEEEecCCCEEEEEe-------CCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCC---CEEEEEeC---C
Q psy226          191 ----HNVTGVAFLPNSDFVLSAS-------RDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG---TLLASCSN---D  253 (406)
Q Consensus       191 ----~~v~~~~~~p~~~~l~s~s-------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s~~~---d  253 (406)
                          ..|..-..+++.+.++..+       -.|.+.+|..+.+ ..+.+.||......+.+..+.   .+|+-+..   .
T Consensus       147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g  225 (494)
T 1bpo_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (494)
T ss_dssp             GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred             hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence                3566666677777544322       2367788887665 346677886655444433211   24444444   3


Q ss_pred             CeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy226          254 HTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       254 ~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~  332 (406)
                      +.++|.++... ....   ........+-|.|+...+.......    ...-..+..-+.-|.|.+||+.++.+++.-.=
T Consensus       226 ~kLhi~Ei~~~~~~~~---~f~kk~vdv~fppe~~~DFPvamqv----s~kygviyviTK~G~i~lyDleTgt~i~~nrI  298 (494)
T 1bpo_A          226 GKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQNDFPVAMQI----SEKHDVVFLITKYGYIHLYDLETGTCIYMNRI  298 (494)
T ss_dssp             CEEEEEECSCCCTTCC---CCCCEEEECCCCTTSTTCCEEEEEE----ETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEEEcCCCccCCC---CccceeeeeeCCcccccCceeEEEe----cccCCEEEEEecCceEEEEecccceeeeeecc
Confidence            78888888543 1111   1111222333333222111000000    01123566667889999999999999987665


Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q psy226          333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR  367 (406)
Q Consensus       333 h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~  367 (406)
                      ....|..-+-+....-++.....|.|.--.++...
T Consensus       299 s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            55666655555554455555577766655554433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.87  E-value=0.86  Score=40.15  Aligned_cols=208  Identities=6%  Similarity=0.066  Sum_probs=95.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEE-EEecCCcceEEEEEecCCCEEEEEeC-----C------CcEEEEEcCCCeEEEE--
Q psy226          162 LLVSCSADMSLKLWDMSTYQCLK-TMQGHDHNVTGVAFLPNSDFVLSASR-----D------KTIKMWEVATGYCVKT--  227 (406)
Q Consensus       162 ~l~sgs~d~~i~vwd~~~~~~~~-~~~~h~~~v~~~~~~p~~~~l~s~s~-----d------~~i~iwd~~~~~~~~~--  227 (406)
                      +++.|+  ..+..||..+.+-.. .+..............++..++.|+.     .      ..+..||..+..-...  
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            344555  568899998876432 11111122222233346777777773     1      1267788877653221  


Q ss_pred             eecCCccEEEEEECCCCCEEEEEeCC--------CeEEEEeCCCccc--eeEEecCCceEEEEEeCCCCCccccccccCC
Q psy226          228 LTGHREWVRQIKVSPDGTLLASCSND--------HTARVWSLATKET--KAELRGHDHTVECVAWAPGVASESISEAAGR  297 (406)
Q Consensus       228 ~~~~~~~v~~l~~~~~~~~l~s~~~d--------~~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  297 (406)
                      +.........+.+  ++.+++.|+.+        ..+.+||+.+.+=  ...+......-..+.                
T Consensus        85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~----------------  146 (315)
T 4asc_A           85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS----------------  146 (315)
T ss_dssp             BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE----------------
T ss_pred             CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE----------------
Confidence            1111111111222  55666666632        3477777765321  100000000000000                


Q ss_pred             CCCCCCCCEEEEEeC-C-----CcEEEEECCCCeEEE--EEeCCCcCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCC
Q psy226          298 PPGQGGGPYLATGSR-D-----KTIKLWDVGSGSLLF--TLIGHDNWVRGVTFHPGGKYLVSCGDDK-----TLRVWDTA  364 (406)
Q Consensus       298 ~~~~~~~~~l~s~~~-d-----~~i~lwd~~~~~~~~--~~~~h~~~v~~l~~s~~g~~l~sgs~d~-----~i~vwd~~  364 (406)
                          .++.+++.|+. +     ..+.+||..+.+=..  .+......-..+.+  +++.++.|+.++     .+.+||..
T Consensus       147 ----~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~  220 (315)
T 4asc_A          147 ----HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT  220 (315)
T ss_dssp             ----ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred             ----ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence                13445666665 2     368889987754221  11111111122222  567777777554     57888987


Q ss_pred             CCcc--ceeeccccceEEEEEEeCCCCEEEEeeCC
Q psy226          365 NKRN--MKTLEAHSHFVTSLDFHRAHPYVVTGSVD  397 (406)
Q Consensus       365 ~~~~--~~~l~~h~~~v~~l~~~~~~~~l~sgs~D  397 (406)
                      +.+-  +..+.........+.+  ++.+++.|+.+
T Consensus       221 ~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          221 DNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred             CCeEEECCCCCCcccceeEEEE--CCEEEEECCcc
Confidence            6532  2222111111112222  56777777764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.74  E-value=0.75  Score=48.96  Aligned_cols=224  Identities=12%  Similarity=0.158  Sum_probs=125.6

Q ss_pred             CCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEE
Q psy226          126 EDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFV  205 (406)
Q Consensus       126 ~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  205 (406)
                      ...+|.|-|+.++....+-.   -..-+.-.+|..+.++.=. ..++.|+|+++.+.++...-.+ +|.-=.|..... |
T Consensus        46 ~~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~-l  119 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNT-V  119 (1630)
T ss_pred             CCceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCe-e
Confidence            34478888988765332111   1112334567777666553 6789999998876666555433 454445553333 3


Q ss_pred             EEEeCCCcEEEEEcCC-CeEEEEeecC----CccEEEEEECCCCCEEEEEe-------CCCeEEEEeCCCccceeEEecC
Q psy226          206 LSASRDKTIKMWEVAT-GYCVKTLTGH----REWVRQIKVSPDGTLLASCS-------NDHTARVWSLATKETKAELRGH  273 (406)
Q Consensus       206 ~s~s~d~~i~iwd~~~-~~~~~~~~~~----~~~v~~l~~~~~~~~l~s~~-------~d~~v~vwd~~~~~~~~~~~~~  273 (406)
                      +-. .+..|.-|++.. ..+.+.+.-|    ...|..-..+++.++++..|       ..|.+.+|..... ..+.+.||
T Consensus       120 ~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegh  197 (1630)
T 1xi4_A          120 ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH  197 (1630)
T ss_pred             EEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHh
Confidence            322 245799999963 2333444333    34566677788888876544       3477888887543 23345566


Q ss_pred             CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC---CCcEEEEECCCC---eEEE-------EEe--CCCcCEE
Q psy226          274 DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR---DKTIKLWDVGSG---SLLF-------TLI--GHDNWVR  338 (406)
Q Consensus       274 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~i~lwd~~~~---~~~~-------~~~--~h~~~v~  338 (406)
                      ...-..+......               .....+..+..   .+.+.|-++...   ...+       .+.  ...+...
T Consensus       198 a~~F~~~~~~~~~---------------~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv  262 (1630)
T 1xi4_A          198 AASFAQFKMEGNA---------------EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  262 (1630)
T ss_pred             HhhhheeccCCCC---------------CCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce
Confidence            5433222211100               01112222222   256777777432   1111       111  1133455


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee
Q psy226          339 GVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL  372 (406)
Q Consensus       339 ~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l  372 (406)
                      ++..|+.-..+..-..-|.|+++|+.++.++..-
T Consensus       263 ~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence            6777777777888888999999999999876543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.74  E-value=0.86  Score=39.70  Aligned_cols=243  Identities=12%  Similarity=0.037  Sum_probs=116.4

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYET-GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~-~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      .|..|+......+++  . ||.|..|-... +++-. -......|..++....- .++. . ||.|..|-......+..-
T Consensus        25 ~i~~ia~G~~h~~~l--~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P   97 (282)
T 3qhy_B           25 GVDAIAGGYFHGLAL--K-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP   97 (282)
T ss_dssp             SCCEEEECSSEEEEE--E-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEeCCCeEEEE--E-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence            456666554333333  4 89999997543 22211 11123367777765432 2333 4 899999965432111000


Q ss_pred             ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc
Q psy226          187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET  266 (406)
Q Consensus       187 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~  266 (406)
                      ..-...|..++....  +.+.-. ||.|..|-....-.+.........|..++...+.  .+.-. ||.|..|-......
T Consensus        98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gq  171 (282)
T 3qhy_B           98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQ  171 (282)
T ss_dssp             GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTST
T ss_pred             cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCC
Confidence            011235666666533  333334 8999999654321111111122346666654333  33333 78998886543222


Q ss_pred             eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCcCEEEEEEcCC
Q psy226          267 KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS-GSLLFTLIGHDNWVRGVTFHPG  345 (406)
Q Consensus       267 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~-~~~~~~~~~h~~~v~~l~~s~~  345 (406)
                      +..-......|..++-..                   ...++.  .||.|..|-... +++- ........|..|+-...
T Consensus       172 lg~p~~~~~~v~~i~~G~-------------------~hs~al--~~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~  229 (282)
T 3qhy_B          172 TTVPAEAQSGVDDVAGGI-------------------FHSLAL--KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEW  229 (282)
T ss_dssp             TSCCGGGGSSEEEEEECS-------------------SEEEEE--ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSS
T ss_pred             CCCceecCCCeEEEEecC-------------------CEEEEE--ECCeEEEEECCCCCCCC-CCcccCCCceEEEcCCC
Confidence            110000112344443221                   122333  589999997543 2211 00111234666665443


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEE
Q psy226          346 GKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVV  392 (406)
Q Consensus       346 g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~  392 (406)
                      -. ++. . ||.|+.|-.....++...    ..|.+++-.....+.+
T Consensus       230 h~-~al-~-~g~v~~wG~n~~gq~~v~----~~v~~iaaG~~h~~al  269 (282)
T 3qhy_B          230 YS-LAL-K-NGKVIAWGSSRTAPSSVQ----SGVSSIEAGPNAAYAL  269 (282)
T ss_dssp             CE-EEE-E-TTEEEEESTTCCCCGGGS----SCEEEEEECSSCEEEE
T ss_pred             EE-EEE-E-CCEEEEecCCCCccccCC----CCcEEEEECcCeEEEE
Confidence            33 333 3 999999976554333321    2466666655544433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.54  E-value=1.1  Score=39.40  Aligned_cols=144  Identities=10%  Similarity=0.014  Sum_probs=71.4

Q ss_pred             cCCCCEEEEEeC----CC-------cEEEEEcCCCcEEEEec--ccccCeeeEEECCCCCEEEEEeCC-------CcEEE
Q psy226          115 HPVFSLMASCSE----DA-------TIRLWDYETGEYERALH--GHLDSVQDIAFDQSGKLLVSCSAD-------MSLKL  174 (406)
Q Consensus       115 ~p~~~~latgs~----dg-------~v~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~g~~l~sgs~d-------~~i~v  174 (406)
                      ..++.+++.|+.    ++       .+.+||..+.+....-.  .....-..+.+  ++.+.+.|+.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence            345677777773    12       17788888876544311  11111112222  56677777653       35778


Q ss_pred             EeCCCCeEEEE--EecCCcceEEEEEecCCCEEEEEeC------CCcEEEEEcCCCeEEEE--eecCCccEEEEEECCCC
Q psy226          175 WDMSTYQCLKT--MQGHDHNVTGVAFLPNSDFVLSASR------DKTIKMWEVATGYCVKT--LTGHREWVRQIKVSPDG  244 (406)
Q Consensus       175 wd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~------d~~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~  244 (406)
                      ||..+.+-...  +......- +++. .++.+++.|+.      -..+.+||..+..-...  +.........+.+  ++
T Consensus       132 yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~  207 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KG  207 (318)
T ss_dssp             EETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred             EeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CC
Confidence            88877553321  11111111 1222 35666666653      23588999887653322  1111111122222  56


Q ss_pred             CEEEEEeCC-----CeEEEEeCCCc
Q psy226          245 TLLASCSND-----HTARVWSLATK  264 (406)
Q Consensus       245 ~~l~s~~~d-----~~v~vwd~~~~  264 (406)
                      ++++.|+.+     ..+.+||+.+.
T Consensus       208 ~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          208 KIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             EEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             EEEEEcCcCCCCccceEEEEECCCC
Confidence            677777643     24567776553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.46  E-value=1.7  Score=40.74  Aligned_cols=109  Identities=13%  Similarity=0.130  Sum_probs=59.2

Q ss_pred             CccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccce--eEEec------CCceEEEEEeCCCCCccccccccCCCCCCCC
Q psy226          232 REWVRQIKVSPDGTLLASCSNDHTARVWSLATKETK--AELRG------HDHTVECVAWAPGVASESISEAAGRPPGQGG  303 (406)
Q Consensus       232 ~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (406)
                      -.....|+|.|+|+++++-...+.|++++..++...  ..+..      .......++++|+...              +
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~--------------~   91 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKN--------------N   91 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTT--------------S
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCc--------------C
Confidence            345678999999997777655557888876443321  11111      2344567888875321              2


Q ss_pred             CCEEEEEeC------------CCcEEEEECCCC-------eEEEE-EeC-CCcCEEEEEEcCCCCEEEEEeC
Q psy226          304 GPYLATGSR------------DKTIKLWDVGSG-------SLLFT-LIG-HDNWVRGVTFHPGGKYLVSCGD  354 (406)
Q Consensus       304 ~~~l~s~~~------------d~~i~lwd~~~~-------~~~~~-~~~-h~~~v~~l~~s~~g~~l~sgs~  354 (406)
                      +.+.++-+.            ...|.-|+...+       +.+.. +.. .......|+|.|+|.+.++.++
T Consensus        92 g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A           92 PYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            322333221            123444443221       12222 221 1235789999999988777553

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.37  E-value=1  Score=37.53  Aligned_cols=136  Identities=13%  Similarity=0.095  Sum_probs=77.7

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCc---E--EEEeccc--ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE------
Q psy226          116 PVFSLMASCSEDATIRLWDYETGE---Y--ERALHGH--LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC------  182 (406)
Q Consensus       116 p~~~~latgs~dg~v~vwd~~~~~---~--~~~~~~h--~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~------  182 (406)
                      |...+|++...| +|++=-...+.   .  ..+..++  -..+.+++|+|+|.+-++  .+|.+.-.+..+.+.      
T Consensus         2 ~~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            2 GGESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred             CcceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc
Confidence            345667777777 55543333332   1  0011122  347889999999886555  667665555543110      


Q ss_pred             EEEE-e-cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeE-------EEEeecCCccEEEEEECCCCCEEEEEeCC
Q psy226          183 LKTM-Q-GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYC-------VKTLTGHREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       183 ~~~~-~-~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                      -..+ . +.. ...++.|.|+|.+.++  .||.|.-++-.+...       ...-.+-=..+..|.+.|+|.+.+..  |
T Consensus        79 ~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--d  153 (236)
T 1tl2_A           79 AKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--G  153 (236)
T ss_dssp             CEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--T
T ss_pred             ccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--C
Confidence            1111 0 112 2578899999987777  568887776533111       11111111356899999999988777  7


Q ss_pred             CeEEEE
Q psy226          254 HTARVW  259 (406)
Q Consensus       254 ~~v~vw  259 (406)
                      +.++-.
T Consensus       154 g~lyr~  159 (236)
T 1tl2_A          154 QQFYKA  159 (236)
T ss_dssp             TEEEEE
T ss_pred             CcEEec
Confidence            775443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.18  E-value=3  Score=41.87  Aligned_cols=260  Identities=10%  Similarity=0.115  Sum_probs=143.4

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      ..|.++...+++. |..|..+| +..||..+.++..........|.++.. .+| .|..|+.+ -+..+|..+.+.. .+
T Consensus        63 ~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~  136 (758)
T 3ott_A           63 TRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SF  136 (758)
T ss_dssp             SCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EE
T ss_pred             ceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Ee
Confidence            4688888777664 44555555 788998887654311112234766654 345 45556665 5778888765533 22


Q ss_pred             e-----cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeec-----CCccEEEEEECCCCCEEEEEeCCCeE
Q psy226          187 Q-----GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG-----HREWVRQIKVSPDGTLLASCSNDHTA  256 (406)
Q Consensus       187 ~-----~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~s~~~d~~v  256 (406)
                      .     .....|.++...+++.+.+ |+.+ -+..+|..++........     ....|.++...+++..|..|+. +.+
T Consensus       137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl  213 (758)
T 3ott_A          137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL  213 (758)
T ss_dssp             CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred             ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence            1     1134578887777776554 4544 477788776643221111     1224788888877776655664 467


Q ss_pred             EEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC----
Q psy226          257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG----  332 (406)
Q Consensus       257 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~----  332 (406)
                      ..+|..+.............|.++...+                  .|. |..|+.+ -+.+++..++........    
T Consensus       214 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~------------------~g~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~  273 (758)
T 3ott_A          214 FQYFPSTGQIKQTEAFHNNSIKSLALDG------------------NGD-LLAGTDN-GLYVYHNDTTPLQHIIHDSRNI  273 (758)
T ss_dssp             EEEETTTTEEEEEEEEEEEEEEEEEECT------------------TCC-EEEEETT-EEEEECCTTSCCEEECCCTTCT
T ss_pred             eEEcCCCCeEEeccCCCCCeEEEEEEcC------------------CCC-EEEEeCC-ceeEEecCCCcEEEEEcCCCCc
Confidence            8888765432211111122355554332                  233 4455544 578888776543221110    


Q ss_pred             ---CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec-------cccceEEEEEEeCCCCEEEEeeCCCeE
Q psy226          333 ---HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE-------AHSHFVTSLDFHRAHPYVVTGSVDKTV  400 (406)
Q Consensus       333 ---h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~-------~h~~~v~~l~~~~~~~~l~sgs~Dg~v  400 (406)
                         ..+.|.++..+.+|..-+ |...| +.+.....  ....+.       .....|.++.-.+++.+-+ |+.+|..
T Consensus       274 ~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl~  346 (758)
T 3ott_A          274 QSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANGLI  346 (758)
T ss_dssp             TSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTEEE
T ss_pred             CcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCcce
Confidence               134589999888887655 44556 54443321  111111       1234688888888877555 3445533

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.03  E-value=1.5  Score=43.67  Aligned_cols=149  Identities=8%  Similarity=0.072  Sum_probs=82.3

Q ss_pred             CCCCEEEEEeCC----CcEEEEEcCCCcEEEEe-c-----cccc-CeeeEEECC-CCCEEEEEeCC------CcEEEEeC
Q psy226          116 PVFSLMASCSED----ATIRLWDYETGEYERAL-H-----GHLD-SVQDIAFDQ-SGKLLVSCSAD------MSLKLWDM  177 (406)
Q Consensus       116 p~~~~latgs~d----g~v~vwd~~~~~~~~~~-~-----~h~~-~V~~l~~~~-~g~~l~sgs~d------~~i~vwd~  177 (406)
                      .++.+++.|+.+    ..+.+||..+++....- .     .... .-.+++..+ ++.+++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456777777754    46889998888765433 2     0111 112233333 67777777754      35788898


Q ss_pred             CCCeEEEE--EecCCcceEEEEEecCCCEEEEEeCCC--cEEEEEcCCCeEEEEe-----ecCCccEEEEEECCC-CCEE
Q psy226          178 STYQCLKT--MQGHDHNVTGVAFLPNSDFVLSASRDK--TIKMWEVATGYCVKTL-----TGHREWVRQIKVSPD-GTLL  247 (406)
Q Consensus       178 ~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d~--~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~~~~-~~~l  247 (406)
                      .+.+....  +...... .+++...++..++.|+.++  .+.+||..+..-...-     .........+.+..+ +.++
T Consensus       476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            87543221  1111111 2233324777888887655  6899998876532221     111122233555554 6677


Q ss_pred             EEEeC--C-----CeEEEEeCCCcc
Q psy226          248 ASCSN--D-----HTARVWSLATKE  265 (406)
Q Consensus       248 ~s~~~--d-----~~v~vwd~~~~~  265 (406)
                      +.|+.  +     ..+.+||+.+..
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCc
Confidence            77765  2     357788887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.99  E-value=0.2  Score=44.91  Aligned_cols=150  Identities=11%  Similarity=-0.010  Sum_probs=83.0

Q ss_pred             CEEEEEeCCCcEEEEEcCCCeEEEEeecC-CccEEEEEE--CC-CCCEEEEE-eCCCeEEEEeCCCccceeEEec----C
Q psy226          203 DFVLSASRDKTIKMWEVATGYCVKTLTGH-REWVRQIKV--SP-DGTLLASC-SNDHTARVWSLATKETKAELRG----H  273 (406)
Q Consensus       203 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~~~v~~l~~--~~-~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~----~  273 (406)
                      +.++.++.||.|.-.|..+|+....+... ..++....-  .+ ++..++.. +.||.+..++..++.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47889999999999999999998888654 112211110  01 22333333 5899999999876633322211    0


Q ss_pred             CceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc-C------EEEEE---Ec
Q psy226          274 DHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN-W------VRGVT---FH  343 (406)
Q Consensus       274 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~-~------v~~l~---~s  343 (406)
                      ..++.. .-.|-..         .+.....+..+++|+.++.+.-.|+++|+.+..+..... .      ..|-.   +.
T Consensus        91 ~SP~~~-~~~pvv~---------~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~  160 (339)
T 2be1_A           91 TSPLHL-KTNIVVN---------DSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIK  160 (339)
T ss_dssp             TCSEEE-ECC-------------------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------
T ss_pred             cccccc-CCCceee---------cccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccc
Confidence            011110 0000000         000000245788999999999999999999988864311 0      00111   10


Q ss_pred             --CCCCEEEEEeCCCeEEEEe
Q psy226          344 --PGGKYLVSCGDDKTLRVWD  362 (406)
Q Consensus       344 --~~g~~l~sgs~d~~i~vwd  362 (406)
                        ..+..|+.|..+..+.+.+
T Consensus       161 ~d~~~~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          161 LQECENMIVIGKTIFELGIHS  181 (339)
T ss_dssp             ----CCEEEEEEEEEECEECC
T ss_pred             cccCCCeEEEecceEEEEEEC
Confidence              1245677777777777766

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.98  E-value=1  Score=39.22  Aligned_cols=219  Identities=12%  Similarity=0.032  Sum_probs=103.0

Q ss_pred             cCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q psy226          149 DSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL  228 (406)
Q Consensus       149 ~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~  228 (406)
                      ..|..++.... ..++. . ||.|..|-......+..-......|..++.... ..++. . ||.|..|-....-.+..-
T Consensus        24 ~~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P   97 (282)
T 3qhy_B           24 SGVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVP   97 (282)
T ss_dssp             SSCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred             CCCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence            35777776543 22333 4 899999965432111000011234656655432 23333 4 899998865432111100


Q ss_pred             ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEE
Q psy226          229 TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLA  308 (406)
Q Consensus       229 ~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  308 (406)
                      ..-...|..++...+  +.+.-. ||.|..|-......+.........|..++-.                    ..+.+
T Consensus        98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G--------------------~~~~~  154 (282)
T 3qhy_B           98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--------------------VYTAL  154 (282)
T ss_dssp             GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--------------------SSEEE
T ss_pred             cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc--------------------cCEEE
Confidence            011235666665443  344445 8999999654322211111112234444322                    11222


Q ss_pred             EEeCCCcEEEEECCC-CeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCC
Q psy226          309 TGSRDKTIKLWDVGS-GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA  387 (406)
Q Consensus       309 s~~~d~~i~lwd~~~-~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~  387 (406)
                      .-. ||.|..|-... +++- ....-...|..++-...- .++.  .||.|+.|-....-.+..-......|..++-...
T Consensus       155 ~l~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~  229 (282)
T 3qhy_B          155 AVK-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW  229 (282)
T ss_dssp             EEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS
T ss_pred             EEE-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC
Confidence            233 78899987543 2211 001112457777654332 2333  5999999976542221110011123556665544


Q ss_pred             CCEEEEeeCCCeEEEee
Q psy226          388 HPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       388 ~~~l~sgs~Dg~v~iw~  404 (406)
                      ..+.++   ||.|..|-
T Consensus       230 h~~al~---~g~v~~wG  243 (282)
T 3qhy_B          230 YSLALK---NGKVIAWG  243 (282)
T ss_dssp             CEEEEE---TTEEEEES
T ss_pred             EEEEEE---CCEEEEec
Confidence            433333   88888874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.66  E-value=1.4  Score=47.02  Aligned_cols=218  Identities=13%  Similarity=0.155  Sum_probs=114.5

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEecC-
Q psy226          112 VIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY-QCLKTMQGH-  189 (406)
Q Consensus       112 v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~-~~~~~~~~h-  189 (406)
                      ...||..+.+|-=. ..++.|+|+++....+...- ..+|.--.|-.... |+-.+ +..|.-|++... .+.+.+..| 
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence            34677777777654 68999999998765554443 34566666654433 33222 457999999632 233333323 


Q ss_pred             ---CcceEEEEEecCCCEEEE-Ee------CCCcEEEEEcCCCeEEEEeecCCccEEEEEEC--CC-CCEEEEEeC---C
Q psy226          190 ---DHNVTGVAFLPNSDFVLS-AS------RDKTIKMWEVATGYCVKTLTGHREWVRQIKVS--PD-GTLLASCSN---D  253 (406)
Q Consensus       190 ---~~~v~~~~~~p~~~~l~s-~s------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~-~~~l~s~~~---d  253 (406)
                         ...|..-..+++.+.++. |-      -.|.+.+|....+ ..+.+.||......+.+.  +. ..+|+.+..   .
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g  225 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence               345666666777775443 32      3477888887654 234556665443333332  11 223333322   3


Q ss_pred             CeEEEEeCCCc-cceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy226          254 HTARVWSLATK-ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       254 ~~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~  332 (406)
                      +.++|.++... ....   ........+-|.|....+......    ....-..+..-+.-|.|.+||+.+|.+++.-.-
T Consensus       226 ~kLhi~Ei~~~~~~~~---~f~kk~~~~~~~~~~~~Dfpv~~~----vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri  298 (1630)
T 1xi4_A          226 GKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQNDFPVAMQ----ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI  298 (1630)
T ss_pred             ceEEEEecCCCccCCC---CCccccccccCCcccccCcceEEE----eccccCEEEEEecCceEEEEecccchhhhhccc
Confidence            68888888543 1111   111112233343322111100000    011223455667789999999999988765443


Q ss_pred             CCcCEEEEE
Q psy226          333 HDNWVRGVT  341 (406)
Q Consensus       333 h~~~v~~l~  341 (406)
                      ....|...+
T Consensus       299 s~~~iF~~~  307 (1630)
T 1xi4_A          299 SGETIFVTA  307 (1630)
T ss_pred             cCCceEEec
Confidence            333343333

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.16  E-value=5.2  Score=40.06  Aligned_cols=268  Identities=11%  Similarity=0.091  Sum_probs=147.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      .|.++...+++..|..|.. +-+..+|..++++..........|.++....+|.+.+. +.+ -+.+++..+.+......
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~~~~~  268 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQHIIH  268 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCEEECC
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEEEEEc
Confidence            4888888877765554553 45888898877654322222346888988888876654 444 47788877654322111


Q ss_pred             c-------CCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee-----cCCccEEEEEECCCCCEEEEEeCCCe
Q psy226          188 G-------HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT-----GHREWVRQIKVSPDGTLLASCSNDHT  255 (406)
Q Consensus       188 ~-------h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~l~s~~~d~~  255 (406)
                      .       ....|.++....+|.+ -.|+..| +.+.............     .....|.++..+++|.+.+. +.+ -
T Consensus       269 ~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~-G  344 (758)
T 3ott_A          269 DSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GAN-G  344 (758)
T ss_dssp             CTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETT-E
T ss_pred             CCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCC-c
Confidence            0       1235888877766664 4455556 5444332211111111     11346888888888876554 455 4


Q ss_pred             EEEEeCCCcc--ceeEEec-------CCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE
Q psy226          256 ARVWSLATKE--TKAELRG-------HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL  326 (406)
Q Consensus       256 v~vwd~~~~~--~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~  326 (406)
                      +..++..++.  ....+..       ....|.++.-..                  .|. |-.|+ ++-|..||..+++.
T Consensus       345 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~------------------~g~-lWigt-~~GL~~~~~~~~~~  404 (758)
T 3ott_A          345 LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDK------------------EQQ-LWIAT-DGSINRYDYATRQF  404 (758)
T ss_dssp             EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECT------------------TSC-EEEEE-TTEEEEEETTTTEE
T ss_pred             ceeecccccccceeEEeccCCcCCCCCCCceEEEEECC------------------CCC-EEEEe-CCcHhhcCcCCCcE
Confidence            6666654321  1111110       012244443222                  233 44455 45689999888765


Q ss_pred             EEEE-eC-----CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----ccc---eeec---c-ccceEEEEEEeCCC
Q psy226          327 LFTL-IG-----HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANK-----RNM---KTLE---A-HSHFVTSLDFHRAH  388 (406)
Q Consensus       327 ~~~~-~~-----h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~-----~~~---~~l~---~-h~~~v~~l~~~~~~  388 (406)
                      .... ..     ....|.++...++|...+ |+..+-|.++|..+.     ...   ..+.   + ....|.++...+++
T Consensus       405 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g  483 (758)
T 3ott_A          405 IHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEG  483 (758)
T ss_dssp             EEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTS
T ss_pred             EEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCC
Confidence            4321 11     234688888888876555 555555778875421     111   1111   1 12358999999998


Q ss_pred             CEEE-EeeCCCeEEEee
Q psy226          389 PYVV-TGSVDKTVKVWE  404 (406)
Q Consensus       389 ~~l~-sgs~Dg~v~iw~  404 (406)
                      .+-+ .|+..| +..+|
T Consensus       484 ~lWi~~~t~~G-l~~~d  499 (758)
T 3ott_A          484 NVWVLLYNNKG-IDKIN  499 (758)
T ss_dssp             CEEEEETTCSS-EEEEE
T ss_pred             CEEEEccCCCC-cEEEe
Confidence            8766 344444 55555

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.16  E-value=2.5  Score=37.85  Aligned_cols=52  Identities=10%  Similarity=0.093  Sum_probs=29.3

Q ss_pred             CCCEEEEEeC-C---------CcEEEEEcCCCcEEEEeccc-ccCee-eEEECCCCCEEEEEeCC
Q psy226          117 VFSLMASCSE-D---------ATIRLWDYETGEYERALHGH-LDSVQ-DIAFDQSGKLLVSCSAD  169 (406)
Q Consensus       117 ~~~~latgs~-d---------g~v~vwd~~~~~~~~~~~~h-~~~V~-~l~~~~~g~~l~sgs~d  169 (406)
                      ++.+++.|+. +         ..+.+||..+.+....-... ..... +++. .++++++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence            4566776765 2         46899999888755432211 11111 1222 467777888754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.51  E-value=4.1  Score=40.48  Aligned_cols=147  Identities=12%  Similarity=0.100  Sum_probs=76.1

Q ss_pred             CCCEEEEEeCCC------cEEEEEcCCCcEEEEeccccc-CeeeEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEe
Q psy226          117 VFSLMASCSEDA------TIRLWDYETGEYERALHGHLD-SVQDIAFDQSGKLLVSCSADM--SLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       117 ~~~~latgs~dg------~v~vwd~~~~~~~~~~~~h~~-~V~~l~~~~~g~~l~sgs~d~--~i~vwd~~~~~~~~~~~  187 (406)
                      ++.+++.|+.++      .+.+||..+.+....-..... .-.+++.-.++.+++.|+.++  .+.+||..+.+-. .+.
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~-~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK-DVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE-ECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE-Ecc
Confidence            455666665432      467788777655433111111 112233324778888887654  6899999876532 222


Q ss_pred             c------CCcceEEEEEecC-CCEEEEEeC--C-----CcEEEEEcCCCeE-----EEEeec---CCccEEEEEECCCCC
Q psy226          188 G------HDHNVTGVAFLPN-SDFVLSASR--D-----KTIKMWEVATGYC-----VKTLTG---HREWVRQIKVSPDGT  245 (406)
Q Consensus       188 ~------h~~~v~~~~~~p~-~~~l~s~s~--d-----~~i~iwd~~~~~~-----~~~~~~---~~~~v~~l~~~~~~~  245 (406)
                      .      ......++.+..+ +..++.|+.  +     ..+.+||+.+...     -..+..   ....-.+++...++.
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~  609 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK  609 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence            1      1122233555555 556666765  2     3588899887651     111211   111111222333366


Q ss_pred             EEEEEeCC--------CeEEEEeCCCc
Q psy226          246 LLASCSND--------HTARVWSLATK  264 (406)
Q Consensus       246 ~l~s~~~d--------~~v~vwd~~~~  264 (406)
                      +++.|+.+        ..+.+||+.+.
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCC
Confidence            77777643        34677776553

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=91.41  E-value=6.9  Score=34.26  Aligned_cols=194  Identities=9%  Similarity=0.043  Sum_probs=96.3

Q ss_pred             CCCCEEEEEe--CCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC--------------CcEEEEEcCC
Q psy226          158 QSGKLLVSCS--ADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD--------------KTIKMWEVAT  221 (406)
Q Consensus       158 ~~g~~l~sgs--~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d--------------~~i~iwd~~~  221 (406)
                      .+|..|+-..  .++.|...+..... ...+...    .+--++++++.|+-++..              ..|+..++..
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            3555555443  24455555554332 2222221    134567888887766543              3566677765


Q ss_pred             CeEEEEeecCCccEEEEEECCCCCEEEEEe--C--CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCC
Q psy226          222 GYCVKTLTGHREWVRQIKVSPDGTLLASCS--N--DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGR  297 (406)
Q Consensus       222 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~--~--d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  297 (406)
                      +.... +....    ...++++++.|+-..  .  ...|..-++.... ...+..+..    ..+.|             
T Consensus        98 ~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~-------------  154 (302)
T 3s25_A           98 HGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNT-------------  154 (302)
T ss_dssp             CCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEE-------------
T ss_pred             CcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeE-------------
Confidence            54322 22211    235677888887665  2  3445555555333 233333221    11111             


Q ss_pred             CCCCCCCCEEEEEe-CCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCccceeecc
Q psy226          298 PPGQGGGPYLATGS-RDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDD--KTLRVWDTANKRNMKTLEA  374 (406)
Q Consensus       298 ~~~~~~~~~l~s~~-~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d--~~i~vwd~~~~~~~~~l~~  374 (406)
                           .+..|+-.+ ...+|..-++..+.....+.+   .. ...++|++.+|+-...+  ..|..-++.... ...|..
T Consensus       155 -----~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~  224 (302)
T 3s25_A          155 -----SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE  224 (302)
T ss_dssp             -----ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC
T ss_pred             -----ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC
Confidence                 233444333 356788888876654433332   12 23456999988765543  356666665433 333432


Q ss_pred             ccceEEEEEEeCCCCEEEE
Q psy226          375 HSHFVTSLDFHRAHPYVVT  393 (406)
Q Consensus       375 h~~~v~~l~~~~~~~~l~s  393 (406)
                      .  .+.  .|+|++..|.-
T Consensus       225 ~--~~~--~~~~~g~~Iy~  239 (302)
T 3s25_A          225 A--NIE--HYNVYGSLIFY  239 (302)
T ss_dssp             S--CEE--EEEEETTEEEE
T ss_pred             C--Ccc--eEEECCCEEEE
Confidence            1  222  25566665543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=90.70  E-value=9.4  Score=34.60  Aligned_cols=47  Identities=4%  Similarity=-0.017  Sum_probs=27.7

Q ss_pred             EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEe
Q psy226          338 RGVTFHPG-GKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFH  385 (406)
Q Consensus       338 ~~l~~s~~-g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~  385 (406)
                      ..++++|. ...|+.++.++.|..- ...++.-..+..+-..+.+|+|.
T Consensus       344 ~~~~~~p~~~~~l~~g~~~g~l~~S-~D~G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          344 QAMTADAHAPVGVYFGTTGGEIWAS-ADEGEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             BSEEECCSSSCCEEEECTTSCEEEE-SSTTSBCEEEECSCSCEEEEEEE
T ss_pred             EEEEECCCCCCEEEEEeCCCeEEEE-CCCCCCceEcccCCCCeeEEEEe
Confidence            35788874 3456667666665533 23455555555444457788775

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=87.68  E-value=3.8  Score=39.12  Aligned_cols=100  Identities=12%  Similarity=0.138  Sum_probs=64.9

Q ss_pred             eeeEEECCCCCEEEEEe-CCCcEEEEeCCCC------eE-------EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEE
Q psy226          151 VQDIAFDQSGKLLVSCS-ADMSLKLWDMSTY------QC-------LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKM  216 (406)
Q Consensus       151 V~~l~~~~~g~~l~sgs-~d~~i~vwd~~~~------~~-------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~i  216 (406)
                      ...+.++|||++++.++ .+.++.++|+.+.      +.       ..... -.-.-...+|.++|+...+..-|..|.-
T Consensus       325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEE
Confidence            45688999999887766 4789999998642      11       11111 1223456889999966666778999999


Q ss_pred             EEcCCC----------eEEEEeecCCccEEEE-----EECCCCCEEEEEe
Q psy226          217 WEVATG----------YCVKTLTGHREWVRQI-----KVSPDGTLLASCS  251 (406)
Q Consensus       217 wd~~~~----------~~~~~~~~~~~~v~~l-----~~~~~~~~l~s~~  251 (406)
                      |++...          ..+..+.-|-.+-...     .-.|+|++|++..
T Consensus       404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            998653          3444554443322211     1257899999875

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.76  E-value=20  Score=33.43  Aligned_cols=103  Identities=15%  Similarity=0.177  Sum_probs=58.7

Q ss_pred             CeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCc---EEEEec-----c----cccCeeeEEECCC----CCEEEEEeC--
Q psy226          108 PVIKVIFHPVFS-LMASCSEDATIRLWDYETGE---YERALH-----G----HLDSVQDIAFDQS----GKLLVSCSA--  168 (406)
Q Consensus       108 ~V~~v~~~p~~~-~latgs~dg~v~vwd~~~~~---~~~~~~-----~----h~~~V~~l~~~~~----g~~l~sgs~--  168 (406)
                      .-..|+|.|++. .|+.+...|.|++++.....   ....+.     +    .......|+|+|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            346889999996 45555678999999754321   111111     1    1346778999996    433333221  


Q ss_pred             C----------CcEEEEeCCC----------CeEEEEEe--cCCcceEEEEEecCCCEEEEEeC
Q psy226          169 D----------MSLKLWDMST----------YQCLKTMQ--GHDHNVTGVAFLPNSDFVLSASR  210 (406)
Q Consensus       169 d----------~~i~vwd~~~----------~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~s~  210 (406)
                      +          ..|.-|.+..          .+.+..+.  ...+....|+|.|||.+.++.+.
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            1          1343455431          22333332  23456789999999987666544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.07  E-value=25  Score=32.85  Aligned_cols=106  Identities=14%  Similarity=0.196  Sum_probs=61.2

Q ss_pred             cCeeeEEECCCCC-EEEEEeCCCcEEEEeCCCC---eEEEEEe-----c----CCcceEEEEEecC----CCEEEEEeC-
Q psy226          149 DSVQDIAFDQSGK-LLVSCSADMSLKLWDMSTY---QCLKTMQ-----G----HDHNVTGVAFLPN----SDFVLSASR-  210 (406)
Q Consensus       149 ~~V~~l~~~~~g~-~l~sgs~d~~i~vwd~~~~---~~~~~~~-----~----h~~~v~~~~~~p~----~~~l~s~s~-  210 (406)
                      ..-..|+|.|+|. +|+++...|.|++++....   ..+..+.     +    .......|+|+|+    +.+.++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4456899999996 5556678899999975422   1112221     1    1356789999996    333333332 


Q ss_pred             -C----------CcEEEEEcCC----------CeEEEEee--cCCccEEEEEECCCCCEEEEEeCCC
Q psy226          211 -D----------KTIKMWEVAT----------GYCVKTLT--GHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       211 -d----------~~i~iwd~~~----------~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                       +          ..|.-|.+..          .+.+..+.  .....-..|+|.|||.+.++.+..+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence             1          1333355432          12232322  1223467899999998888776543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.23  E-value=10  Score=39.14  Aligned_cols=38  Identities=34%  Similarity=0.538  Sum_probs=32.5

Q ss_pred             CeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q psy226          150 SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677777888899999999999999999999987653

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.71  E-value=9.1  Score=39.55  Aligned_cols=37  Identities=22%  Similarity=0.230  Sum_probs=32.2

Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee
Q psy226          336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL  372 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l  372 (406)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4677788888899999999999999999998877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	406
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-80
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-30
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-49
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-35
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-32
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-38
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-34
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-32
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-28
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-22
d1uuja_	76	a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF	1e-32
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-31
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-22
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-15
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-29
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-19
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-17
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-28
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-18
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-12
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-28
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-20
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-27
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-20
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-17
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-26
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-20
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-14
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-26
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-25
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-19
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-17
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-24
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-21
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-18
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-23
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-16
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-23
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-18
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-16
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-22
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-19
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-22
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-21
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-13
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-20
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-15
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-10
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-19
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-19
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-17
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-09
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-15
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-15
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-14
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-12
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	7e-12
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-08
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	1e-09
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	1e-07
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	1e-07
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	4e-04
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	2e-07
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	2e-04
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	3e-04
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	3e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  246 bits (629), Expect = 7e-80
 Identities = 222/316 (70%), Positives = 260/316 (82%), Gaps = 2/316 (0%)

Query: 91  EWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDS 150
           EWIPR PEK+ALSGHRSPV +VIFHPVFS+M S SEDATI++WDYETG++ER L GH DS
Sbjct: 2   EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS 61

Query: 151 VQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR 210
           VQDI+FD SGKLL SCSADM++KLWD   ++C++TM GHDHNV+ V+ +PN D ++SASR
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 211 DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL 270
           DKTIKMWEV TGYCVKT TGHREWVR ++ + DGTL+ASCSND T RVW +ATKE KAEL
Sbjct: 122 DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181

Query: 271 RGHDHTVECVAWAPGVASESISEAAGRPPGQGG--GPYLATGSRDKTIKLWDVGSGSLLF 328
           R H H VEC++WAP  +  SISEA G    + G  GP+L +GSRDKTIK+WDV +G  L 
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241

Query: 329 TLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAH 388
           TL+GHDNWVRGV FH GGK+++SC DDKTLRVWD  NKR MKTL AH HFVTSLDFH+  
Sbjct: 242 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 301

Query: 389 PYVVTGSVDKTVKVWE 404
           PYVVTGSVD+TVKVWE
Sbjct: 302 PYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (287), Expect = 8e-30
 Identities = 83/254 (32%), Positives = 117/254 (46%), Gaps = 39/254 (15%)

Query: 173 KLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHR 232
           K W          + GH   VT V F P    ++SAS D TIK+W+  TG   +TL GH 
Sbjct: 1   KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59

Query: 233 EWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESIS 292
           + V+ I     G LLASCS D T ++W     E    + GHDH V  V+  P        
Sbjct: 60  DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN------- 112

Query: 293 EAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSC 352
                      G ++ + SRDKTIK+W+V +G  + T  GH  WVR V  +  G  + SC
Sbjct: 113 -----------GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161

Query: 353 GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFH--------------------RAHPYVV 392
            +D+T+RVW  A K     L  H H V  + +                     +  P+++
Sbjct: 162 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 221

Query: 393 TGSVDKTVKVWECR 406
           +GS DKT+K+W+  
Sbjct: 222 SGSRDKTIKMWDVS 235

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  167 bits (423), Expect = 4e-49
 Identities = 75/352 (21%), Positives = 141/352 (40%), Gaps = 26/352 (7%)

Query: 59  LQKKVIELESKLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFA--LSGHRSPVIKVIFHP 116
           L+++  +L++++ +A K     A      +  + + R   +    L GH + +  + +  
Sbjct: 7   LRQEAEQLKNQIRDARKA-CADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT 65

Query: 117 VFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWD 176
              L+ S S+D  + +WD  T     A+      V   A+  SG  +     D    +++
Sbjct: 66  DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125

Query: 177 MSTYQCLKTM---QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
           + T +    +                 + + ++++S D T  +W++ TG    T TGH  
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185

Query: 234 WVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISE 293
            V  + ++PD  L  S + D +A++W +     +    GH+  +  + + P         
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN-------- 237

Query: 294 AAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNW--VRGVTFHPGGKYLVS 351
                     G   ATGS D T +L+D+ +   L T    +    +  V+F   G+ L++
Sbjct: 238 ----------GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287

Query: 352 CGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
             DD    VWD         L  H + V+ L        V TGS D  +K+W
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  130 bits (326), Expect = 4e-35
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 2/158 (1%)

Query: 105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV 164
           H   V+ +   P   L  S + DA+ +LWD   G   +   GH   +  I F  +G    
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242

Query: 165 SCSADMSLKLWDMSTYQCLKTMQGHDHN--VTGVAFLPNSDFVLSASRDKTIKMWEVATG 222
           + S D + +L+D+   Q L T    +    +T V+F  +   +L+   D    +W+    
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302

Query: 223 YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS 260
                L GH   V  + V+ DG  +A+ S D   ++W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  122 bits (306), Expect = 3e-32
 Identities = 47/255 (18%), Positives = 92/255 (36%), Gaps = 29/255 (11%)

Query: 181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKV 240
           +  +T++GH   +  + +  +S  ++SAS+D  + +W+  T   V  +     WV     
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 241 SPDGTLLASCSNDHTARVWSLATKETKAELRGHD-------------------------- 274
           +P G  +A    D+   +++L T+E    +                              
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 275 -HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH 333
               +             +                +G+ D + KLWDV  G    T  GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 334 DNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF--VTSLDFHRAHPYV 391
           ++ +  + F P G    +  DD T R++D    + + T    +    +TS+ F ++   +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 392 VTGSVDKTVKVWECR 406
           + G  D    VW+  
Sbjct: 286 LAGYDDFNCNVWDAL 300

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  139 bits (351), Expect = 3e-38
 Identities = 76/380 (20%), Positives = 145/380 (38%), Gaps = 71/380 (18%)

Query: 79  EGAPTRAKRSPTEWI----PRAPEKFALS-----GHRSPVIKVIFHPVFSLMASCSEDAT 129
           +  P   K+   ++     P  P +  +       H S V  V F      +A+   + T
Sbjct: 26  QSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKT 84

Query: 130 IRLWDYETGEYERAL------------------HGHLDSVQDIAFDQSGKLLVSCSADMS 171
            +++    G     L                        ++ + F   GK L + + D  
Sbjct: 85  TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRL 144

Query: 172 LKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH 231
           +++WD+   + +  +QGH+ ++  + + P+ D ++S S D+T+++W++ TG C  TL+  
Sbjct: 145 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 204

Query: 232 REWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL-------RGHDHTVECVAWAP 284
                      DG  +A+ S D   RVW   T      L        GH  +V  V +  
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 264

Query: 285 GVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF------------TLIG 332
                              G  + +GS D+++KLW++ + +               T IG
Sbjct: 265 D------------------GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 306

Query: 333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLD------FHR 386
           H ++V  V      +Y++S   D+ +  WD  +   +  L+ H + V S+          
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366

Query: 387 AHPYVVTGSVDKTVKVWECR 406
            +    TGS D   ++W+ +
Sbjct: 367 EYNVFATGSGDCKARIWKYK 386

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 9e-34
 Identities = 81/350 (23%), Positives = 126/350 (36%), Gaps = 73/350 (20%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQS-- 159
           L GH   VI        + + S S+D T+++W   TG+  R L GH   V       +  
Sbjct: 12  LKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII 70

Query: 160 ------------------------------------GKLLVSCSADMSLKLWDMSTYQCL 183
                                                K +VS S D +L++WD+ T QCL
Sbjct: 71  ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL 130

Query: 184 KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPD 243
             + GH   V       +   V+S + D  +K+W+  T  C+ TL GH   V  +    D
Sbjct: 131 HVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFD 186

Query: 244 GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGG 303
           G  + S S D + RVW + T      L GH      +                       
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN------------------ 228

Query: 304 GPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHP-GGKYLVSCGDDKTLRVWD 362
              L +G+ D T+K+WD+ +G  L TL G +     VT       ++++  DD T+++WD
Sbjct: 229 --ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD 286

Query: 363 TANKRNMKTLEA-----HSHFVTSLDFHRAHPYVVTGSVDKT----VKVW 403
                 ++ L           V  +           GS + T    + V 
Sbjct: 287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (305), Expect = 4e-32
 Identities = 77/313 (24%), Positives = 131/313 (41%), Gaps = 64/313 (20%)

Query: 133 WDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
           W     +  + L GH D V        G  +VS S D +LK+W   T +CL+T+ GH   
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 193 VTGVAFLPN--------------------------------------SDFVLSASRDKTI 214
           V       N                                         V+S SRD T+
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 215 KMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHD 274
           ++W++ TG C+  L GH   VR ++       + S + D   +VW   T+     L+GH 
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDPETETCLHTLQGHT 177

Query: 275 HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD 334
           + V  + +                     G ++ +GS D +I++WDV +G+ + TL GH 
Sbjct: 178 NRVYSLQF--------------------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 217

Query: 335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP-YVVT 393
           +   G+        LVS   D T+++WD    + ++TL+  +   +++   + +  +V+T
Sbjct: 218 SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVIT 275

Query: 394 GSVDKTVKVWECR 406
            S D TVK+W+ +
Sbjct: 276 SSDDGTVKLWDLK 288

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 1e-28
 Identities = 71/251 (28%), Positives = 114/251 (45%), Gaps = 32/251 (12%)

Query: 121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY 180
           + S S DAT+R+WD ETG+    L GH+ +V+ + +D   + +VS + D  +K+WD  T 
Sbjct: 110 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWDPETE 167

Query: 181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKV 240
            CL T+QGH + V  + F  +   V+S S D +I++W+V TG C+ TLTGH+       +
Sbjct: 168 TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG--M 223

Query: 241 SPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPG 300
                +L S + D T ++W + T +    L+G +     V                    
Sbjct: 224 ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-------------- 269

Query: 301 QGGGPYLATGSRDKTIKLWDVGSGSLLFTLI-----GHDNWVRGVTFHPGGKYLVSCGDD 355
                ++ T S D T+KLWD+ +G  +  L+     G    V  +              +
Sbjct: 270 ---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326

Query: 356 KT----LRVWD 362
            T    L V D
Sbjct: 327 GTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.3 bits (230), Expect = 9e-22
 Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 14/170 (8%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
           L GH + V  + F      + S S D +IR+WD ETG     L GH      +       
Sbjct: 173 LQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDN 228

Query: 162 LLVSCSADMSLKLWDMSTYQCLKTMQG-HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVA 220
           +LVS +AD ++K+WD+ T QCL+T+QG + H         N +FV+++S D T+K+W++ 
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

Query: 221 TGYCVKTLT-----GHREWVRQIKVSPDGTLLASCSNDHTA----RVWSL 261
           TG  ++ L      G    V +I+ S    + A  S + T      V   
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (290), Expect = 1e-32
 Identities = 54/76 (71%), Positives = 66/76 (86%), Gaps = 2/76 (2%)

Query: 2  VLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLP--AEVEKKYSGLLEKKWTSVIRL 59
          VLSQRQR+ELN+A+ADYL SNGY  A   FKK+A+L    E++KKY+GLLEKKWTSVIRL
Sbjct: 1  VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRL 60

Query: 60 QKKVIELESKLSEAEK 75
          QKKV+ELESKL+EA++
Sbjct: 61 QKKVMELESKLNEAKE 76

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 3e-31
 Identities = 67/310 (21%), Positives = 114/310 (36%), Gaps = 74/310 (23%)

Query: 101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG 160
             S     V  + +      + S   D TI++WD  T E +R L GH  SV  + +D+  
Sbjct: 10  CRSETSKGVYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

Query: 161 KLLVSCSADM--------------------------------------SLKLWDMSTYQC 182
            +  S  + +                                      S+ +WDM++   
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 183 L-KTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVS 241
           +        H         +  +++SAS D+TIK+W  +T   V+TL GH+  +  +   
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL--Q 185

Query: 242 PDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQ 301
               L+ S S+D+T R+W +        L GH+  V C+ +                   
Sbjct: 186 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN----------------- 228

Query: 302 GGGPYLATGSRDKTIKLWDVGSG---------SLLFTLIGHDNWVRGVTFHPGGKYLVSC 352
                + +G+ D  IK+WD+ +            L TL+ H   V  + F      +VS 
Sbjct: 229 ---KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSS 283

Query: 353 GDDKTLRVWD 362
             D T+ +WD
Sbjct: 284 SHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (232), Expect = 2e-22
 Identities = 50/266 (18%), Positives = 98/266 (36%), Gaps = 29/266 (10%)

Query: 142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPN 201
                    V  + +D   + +VS   D ++K+WD +T +C + + GH  +V  + +   
Sbjct: 9   HCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--- 63

Query: 202 SDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSL 261
            D  +  +      +            T        + +  +  ++ +CS D +  VW +
Sbjct: 64  -DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 262 A-TKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWD 320
           A   +         H                              Y+ + S D+TIK+W+
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDD------------------KYIVSASGDRTIKVWN 164

Query: 321 VGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVT 380
             +   + TL GH   +  + +    + +VS   D T+R+WD      ++ LE H   V 
Sbjct: 165 TSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 222

Query: 381 SLDFHRAHPYVVTGSVDKTVKVWECR 406
                  +  +V+G+ D  +KVW+  
Sbjct: 223 --CIRFDNKRIVSGAYDGKIKVWDLV 246

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (182), Expect = 1e-15
 Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 28/208 (13%)

Query: 223 YCVKTLTGHREWVRQIK-VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVA 281
           + ++ +    E  + +  +  D   + S   D+T ++W   T E K  L GH  +V C+ 
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 282 WAPGVASESISEAAGRPPGQGGGPYLATGS--------------------RDKTIKLWDV 321
           +   V     S++  R      G  L T                      +D++I +WD+
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 322 GSGSLL---FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
            S + +     L+GH   V  V F        S   D+T++VW+T+    ++TL  H   
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIV--SASGDRTIKVWNTSTCEFVRTLNGHKRG 180

Query: 379 VTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           +  L +      VV+GS D T+++W+  
Sbjct: 181 IACLQYR--DRLVVSGSSDNTIRLWDIE 206

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (282), Expect = 7e-29
 Identities = 49/350 (14%), Positives = 109/350 (31%), Gaps = 45/350 (12%)

Query: 97  PEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAF 156
           P++  L GH + VI        + + + ++D  IR++D    ++   L GH   V  + +
Sbjct: 3   PQRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY 61

Query: 157 DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHD-HNVTGVAFLPNSDFVLSASRDKTIK 215
              G L+   +                     +       +    N  ++++ SRD T+ 
Sbjct: 62  AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121

Query: 216 MWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDH 275
           +W++     V       ++        +          H A V +++          +D+
Sbjct: 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181

Query: 276 TVECVAWAPGVASESISEAAGR---PPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG 332
           T+     A       +S    R              + S D TI++WD+ +G L++TL G
Sbjct: 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241

Query: 333 HDNW--------------------------------------VRGVTFHPGGKYLVSCGD 354
           H                                         +  +T       ++  G 
Sbjct: 242 HTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS 301

Query: 355 DKTLRVWDTANKRNMK-TLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
           +    +++  + + +   +   +  + S++F      V     D    + 
Sbjct: 302 ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.9 bits (208), Expect = 8e-19
 Identities = 56/306 (18%), Positives = 106/306 (34%), Gaps = 45/306 (14%)

Query: 144 LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSD 203
           L GH+ SV           +++ + D  ++++D    + L  + GHD  V  + +     
Sbjct: 8   LRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG- 65

Query: 204 FVLSASRDKTIKMWEVATGYCVKTLTGHR--EWVRQIKVSPDGTLLASCSNDHTARVWSL 261
            ++S S D+T+++W++  G C     GH        I    +   + + S D+T  VW L
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 262 ATKETKAELRGHDHTVECVA---WAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL 318
             + +  +                 P          A      G G  + +GS D T+ +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 319 WDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
           WDV     L+ L GH + +    +    K  +S   D T+R+WD  N   M TL+ H+  
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 379 --------------------------------------VTSLDFHRAHPYVVTGSVDKTV 400
                                                 ++++        ++    +   
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF 305

Query: 401 KVWECR 406
            ++  R
Sbjct: 306 NIYNLR 311

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.9 bits (195), Expect = 4e-17
 Identities = 53/242 (21%), Positives = 92/242 (38%), Gaps = 39/242 (16%)

Query: 185 TMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG 244
           T++GH  +V         ++V++ + DK I++++      +  L+GH   V  +K +  G
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 245 TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGG 304
             L S S D T RVW +          GH+ TV C+                        
Sbjct: 66  I-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI----------------VEYKNI 108

Query: 305 PYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT---------------------FH 343
            Y+ TGSRD T+ +W +   S +       ++                            
Sbjct: 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168

Query: 344 PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
             G  +VS   D TL VWD A  + +  L  H+  + S  +       ++ S+D T+++W
Sbjct: 169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 228

Query: 404 EC 405
           + 
Sbjct: 229 DL 230

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (161), Expect = 8e-13
 Identities = 57/306 (18%), Positives = 108/306 (35%), Gaps = 48/306 (15%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSG- 160
           LSGH   V  + +     ++ S S D T+R+WD + G       GH  +V+ +   +   
Sbjct: 49  LSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 107

Query: 161 -KLLVSCSADMSLKLWDMSTYQCLKTMQGHD---------------------HNVTGVAF 198
            K +V+ S D +L +W +     +                            H  +    
Sbjct: 108 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 167

Query: 199 LPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV 258
             + + V+S S D T+ +W+VA   C+  L+GH + +       +     S S D T R+
Sbjct: 168 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 227

Query: 259 WSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQG---------------- 302
           W L   E    L+GH   V  +  +      + ++ + R                     
Sbjct: 228 WDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI 287

Query: 303 -----GGPYLATGSRDKTIKLWDVGSGSLL-FTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
                    L +GS +    ++++ SG L+   ++   + +  V F      + +   D 
Sbjct: 288 TTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDG 345

Query: 357 TLRVWD 362
              +  
Sbjct: 346 QSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.5 bits (160), Expect = 1e-12
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 6/171 (3%)

Query: 92  WIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSV 151
            + +    + LSGH   +   I+        S S D TIR+WD E GE    L GH   V
Sbjct: 187 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 246

Query: 152 QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD 211
             +       +  +    +             +    H  N++ +     SD +L +  +
Sbjct: 247 GLLRLSDKFLVSAAADGSI----RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSE 302

Query: 212 KTIKMWEVATGYCVK-TLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSL 261
               ++ + +G  V   +    + +  +      TL+A+   D  + +  L
Sbjct: 303 NQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 2e-28
 Identities = 46/301 (15%), Positives = 90/301 (29%), Gaps = 33/301 (10%)

Query: 92  WIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERAL-----HG 146
            IPR   +     H   V  V        + +      +++WD      +  +       
Sbjct: 37  GIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLN 95

Query: 147 HLDSVQDIAFDQSGKLLVSCSAD--MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDF 204
             + ++       G  L+       +S+      T +    +         +A  P+S  
Sbjct: 96  RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155

Query: 205 VLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK 264
             S   D  I +W++     V+   GH +    I +S DGT L +   D+T R W L   
Sbjct: 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215

Query: 265 ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQG---------------------- 302
               +       +  + + P     ++   +                             
Sbjct: 216 RQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA 274

Query: 303 -GGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVW 361
             G +  +  +D  +  W    G+ +F      + V         KY+V+   DK   V+
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVY 333

Query: 362 D 362
           +
Sbjct: 334 E 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (203), Expect = 3e-18
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 3/148 (2%)

Query: 114 FHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLK 173
                + + +   D T+R         +   H     +  + +  +G+  ++   + S  
Sbjct: 191 ISNDGTKLWTGGLDNTVR-SWDLREGRQLQQHDFTSQIFSLGYCPTGEW-LAVGMESSNV 248

Query: 174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHRE 233
                       +  H+  V  + F     + +S  +D  +  W    G  +        
Sbjct: 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESS 307

Query: 234 WVRQIKVSPDGTLLASCSNDHTARVWSL 261
            V    +S D   + + S D  A V+ +
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (191), Expect = 1e-16
 Identities = 43/287 (14%), Positives = 78/287 (27%), Gaps = 25/287 (8%)

Query: 125 SEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLK 184
             DA I             L  H + V  +      + + +      +K+WD+S      
Sbjct: 29  PPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86

Query: 185 T-----MQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIK 239
                     D+ +     LP+   ++      T+ +W++A                   
Sbjct: 87  PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA 146

Query: 240 VSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPP 299
           ++         S      +            +   HT                       
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI----------------D 190

Query: 300 GQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLR 359
               G  L TG  D T++ WD+  G  L       + +  + + P G++L    +     
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSN-V 248

Query: 360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
                NK +   L  H   V SL F     + V+   D  +  W   
Sbjct: 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (180), Expect = 3e-15
 Identities = 40/253 (15%), Positives = 72/253 (28%), Gaps = 21/253 (8%)

Query: 69  KLSEAEKEYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDA 128
           KL       + G             P    K  L+        +   P   +  SC  D 
Sbjct: 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163

Query: 129 TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQG 188
            I +WD       R   GH D    I     G  L +   D +++ WD+   +       
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-LQQHD 222

Query: 189 HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLA 248
               +  + + P  +++        +++  V      +    H   V  +K +  G    
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFV 281

Query: 249 SCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLA 308
           S   D+    W      +  +      +V     +                      Y+ 
Sbjct: 282 STGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVD------------------DKYIV 322

Query: 309 TGSRDKTIKLWDV 321
           TGS DK   +++V
Sbjct: 323 TGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 6e-12
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 303 GGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
           G         D  I          + TL  H   V  VT     +++ + G    ++VWD
Sbjct: 21  GQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGGKG-CVKVWD 78

Query: 363 TANKRNMKTLE-----AHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC 405
            ++  N   +         +++ S         ++ G    T+ +W+ 
Sbjct: 79  ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score =  110 bits (275), Expect = 7e-28
 Identities = 31/322 (9%), Positives = 76/322 (23%), Gaps = 35/322 (10%)

Query: 112 VIFHPVFSLMASCSEDATIRLWDYETGEYERAL-HGHLDSVQDIAFDQSGK-LLVSCSAD 169
                    M   +    + + D  +    ++                  +   V  +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 170 MSLKLWDMSTYQCLK------TMQGHDHNVTGVAFLPNSDFVLSASRDKT---------- 213
             +   D+ T +                ++   A  P+   V +                
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 214 --IKMWEVATGYCVKTLTGHREW--VRQIKVSPDGTLLASCSNDHTARVWSLATKETKAE 269
             ++++  A G   K +        V  ++ + DG+L  +  + +      + T +    
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIY---KMDVKTGKYTVA 178

Query: 270 LRGHDHTVECV-------AWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG 322
           L   +   +          W         S        +      AT          D+ 
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238

Query: 323 SGSLLFTLIG-HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTS 381
           +G                    P     +    +  L  +D   ++ +K      H    
Sbjct: 239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKAAN-LDHTYYC 296

Query: 382 LDFHRAHPYVVTGSVDKTVKVW 403
           + F +    +  G     + V+
Sbjct: 297 VAFDKKGDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 87.9 bits (216), Expect = 7e-20
 Identities = 35/284 (12%), Positives = 71/284 (25%), Gaps = 31/284 (10%)

Query: 120 LMASCSEDATIRLWDYETGEYERALH------GHLDSVQDIAFDQSGKLLVSCSAD---- 169
                +    I   D +T +     +          S+   A    GK + +        
Sbjct: 54  AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL 113

Query: 170 --------MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT 221
                     L+++  +     K ++        V  +  +D          I   +V T
Sbjct: 114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR-QVYLMRAADDGSLYVAGPDIYKMDVKT 172

Query: 222 GYCVKTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKETKAELRGHDHTVECV 280
           G     L     W R+   +PD        S  H   +     +    +       +   
Sbjct: 173 GKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231

Query: 281 AWAPGVASESISEAAGRPPG--------QGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG 332
             +  + +                        P    G  +  +  +D+    L+     
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLIKA-AN 289

Query: 333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHS 376
            D+    V F   G  L   G    L V++      +K ++   
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 76.7 bits (187), Expect = 4e-16
 Identities = 28/286 (9%), Positives = 62/286 (21%), Gaps = 44/286 (15%)

Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ-GHDHNVTGVAFLPNSDFVL-SASRD 211
            A     + ++  +   +L + D+++    K+               P++       +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 212 KTIKMWEVATGYCVKTLT------GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKE 265
             I   ++ T                   +    +SPDG  + +  N           K 
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 266 TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS 325
            + E+      +E            +        G               I   DV +G 
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-------LYVAGPDIYKMDVKTGK 174

Query: 326 LLFTLIGHDNWVRGVTFH--------------------------PGGKYLVSCGDDKTLR 359
               L    NW R                                  +   +        
Sbjct: 175 YTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 233

Query: 360 VWDTAN-KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
             D    K + +     +    +       P  + G     +  ++
Sbjct: 234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYD 278

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 70.9 bits (172), Expect = 4e-14
 Identities = 20/213 (9%), Positives = 48/213 (22%), Gaps = 8/213 (3%)

Query: 195 GVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT-GHREWVRQIKVSPDG-TLLASCSN 252
           G A     ++++  +    + + +VA+    K+     +       ++PD  T     ++
Sbjct: 1   GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 253 DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR 312
                   L T +            E        A     +                  +
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 313 DKTIKLWDVGSGSLLFTLIGHD--NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMK 370
              ++++    G     +        V  +     G   V+  D       D    +   
Sbjct: 121 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI---YKMDVKTGKYTV 177

Query: 371 TLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
            L   +             Y       +     
Sbjct: 178 ALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSM 209

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (271), Expect = 4e-27
 Identities = 56/363 (15%), Positives = 106/363 (29%), Gaps = 63/363 (17%)

Query: 101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERAL------------HGHL 148
           A   H + +  V      S   SCS D  +++WD +  + E                 H+
Sbjct: 9   AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 149 DSVQDIAFDQS-GKLLVSCSADMSLKLWDMSTYQCLKTMQG----------HDHNVTGVA 197
           D +Q I  D     L+ + S    L  + ++     K +              H+   + 
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 198 FLPNSD-----FVLSASRDKTIKMWEVATGY------------------CVKTLTGHREW 234
           +  ++D      +++     T  +W+                        V++     ++
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 235 VRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEA 294
              + +S  G L+A+  N+ T ++       T   L   +     +  +  + S   S  
Sbjct: 187 ATSVDISERG-LIATGFNNGTVQIS---ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 242

Query: 295 AGRPPGQGGG-------PYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK 347
                             Y                S         H +WV  ++F+  G+
Sbjct: 243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE 302

Query: 348 YLVSCGDDKTLRVWDTANKRNMKTLEAHSHFV----TSLDFHRAHPYVVTGSVDKTVKVW 403
            L S G D  LR WD   K  + TL  H   +      L        +    V     + 
Sbjct: 303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 362

Query: 404 ECR 406
           +  
Sbjct: 363 KGW 365

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.4 bits (217), Expect = 7e-20
 Identities = 25/261 (9%), Positives = 74/261 (28%), Gaps = 43/261 (16%)

Query: 182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYC------VKTLTGHREWV 235
                + HD ++  V+    + F +S S D  +K+W+              +   H+  +
Sbjct: 6   TANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 236 RQIKV-------SPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVAS 288
             + V       + +  L+A+ S       + +  ++   ++      +           
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH--- 120

Query: 289 ESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSG------------------SLLFTL 330
              +   G    +     L       T  +W                         + + 
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 331 IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNM------KTLEAHSHFVTSLDF 384
           +    +   V     G  + +  ++ T+++ + +  R +       ++  +S+ + S+ F
Sbjct: 181 MTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239

Query: 385 HRAHPYVVTGSVDKTVKVWEC 405
                 +       +      
Sbjct: 240 SPQGSLLAIAHDSNSFGCITL 260

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.4 bits (199), Expect = 1e-17
 Identities = 38/321 (11%), Positives = 88/321 (27%), Gaps = 73/321 (22%)

Query: 114 FHPVFSLMASCSEDATIRLWDYETGEYERAL----------HGHLDSVQDIAFDQSG--- 160
                 L+A+ S    +  +     +  + +               S   + +  S    
Sbjct: 75  DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134

Query: 161 --KLLVSCSADMSLKLWDMSTYQ------------------CLKTMQGHDHNVTGVAFLP 200
               LV+     +  +W    +                    +++        T V    
Sbjct: 135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 194

Query: 201 NSDFVLSASRDKTIK------MWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH 254
               + +   + T++      +  +       ++  +   +R +K SP G+LLA   + +
Sbjct: 195 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 253

Query: 255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK 314
           +    +L   E    +     +V   +    +   + S           G  L +   D 
Sbjct: 254 SFGCITLYETEFGERI--GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311

Query: 315 TIKLWDVGSGSLLFTLIGHDNWVR----GVTFHPGGKYLVSCG----------------- 353
            ++ WDV +   + TL  H + +      +     G  L   G                 
Sbjct: 312 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGA 371

Query: 354 ----------DDKTLRVWDTA 364
                      D+++R +  A
Sbjct: 372 DLNESLCCVCLDRSIRWFREA 392

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 2e-13
 Identities = 31/207 (14%), Positives = 65/207 (31%), Gaps = 30/207 (14%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHL------DSVQDIA 155
                     V       L+A+   + T+++ +  T                 +S++ + 
Sbjct: 180 PMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238

Query: 156 FDQSGKLLVSCSAD---MSLKLWDMSTYQCLKTMQGHDHN-------------VTGVAFL 199
           F   G LL           + L++    + + ++    H+             V  ++F 
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298

Query: 200 PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQ----IKVSPDGTLLASCSNDHT 255
            + + + SA  D  ++ W+V T   + TL  H + +      + V   G  LA       
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD- 357

Query: 256 ARVWSLATKETKAELRGHDHTVECVAW 282
             V  L            + ++ CV  
Sbjct: 358 --VKFLKKGWRSGMGADLNESLCCVCL 382

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 19/137 (13%)

Query: 88  SPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGH 147
           S +     +        H S V+ + F+     + S   D  +R WD +T E    L+ H
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 148 LDSVQD----IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSD 203
            D ++     +A D+ G  L          ++D+                        ++
Sbjct: 331 CDDIEIEEDILAVDEHGDSLAEPG------VFDVKFL---------KKGWRSGMGADLNE 375

Query: 204 FVLSASRDKTIKMWEVA 220
            +     D++I+ +  A
Sbjct: 376 SLCCVCLDRSIRWFREA 392

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score =  107 bits (266), Expect = 1e-26
 Identities = 32/309 (10%), Positives = 81/309 (26%), Gaps = 30/309 (9%)

Query: 120 LMASCSEDATIRLWDYETGEYER--ALHGHLDSVQDIAFDQSGK-LLVSCSADMSLKLWD 176
            + + +    + + D E    ++   +     +         G+    + +   SL   D
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 177 MSTYQCLKTMQGHD-----HNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYC------- 224
           + T + L  +          ++ G A  P+   +        +++               
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 225 ----VKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECV 280
                +        +  +  + DG+ L     D    V          +        E  
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDL--HVMDPEAGTLVEDKPIQSWEAETY 180

Query: 281 AWAPGVASESISEAAGR-----PPGQGGGPYLATGSRDKTIKLWDVGSGSLLFT-LIGHD 334
           A    +A  +  E++G         +         +    +   D+ +G +    +   D
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240

Query: 335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG 394
            +      +P             L  +D     ++K +    H   S++       V  G
Sbjct: 241 VFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLG 297

Query: 395 SVDKTVKVW 403
                +  +
Sbjct: 298 GALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 90.2 bits (222), Expect = 1e-20
 Identities = 31/290 (10%), Positives = 68/290 (23%), Gaps = 27/290 (9%)

Query: 120 LMASCSEDATIRLWDYETGEYERALHGH-----LDSVQDIAFDQSGKLLVSCSADMSLKL 174
             A+ ++  ++   D  TGE    +        + S+   A    GK L    + + L+L
Sbjct: 48  AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107

Query: 175 WDMSTYQC-----------LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY 223
                               +        +T +A+  +   +    RD  +   E   G 
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE--AGT 165

Query: 224 CVKTLTGHREWVRQ------IKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTV 277
            V+                 + V          +         +   +  A   G     
Sbjct: 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225

Query: 278 ECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV 337
                        +                        ++ +D+   + +   +   +  
Sbjct: 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNASIKR-VPLPHSY 282

Query: 338 RGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA 387
             V     G  +   G    L  +D         ++   +   SL   R 
Sbjct: 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRL 332

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 71.8 bits (174), Expect = 2e-14
 Identities = 24/265 (9%), Positives = 55/265 (20%), Gaps = 23/265 (8%)

Query: 161 KLLVSCSADMSLKLWDMSTYQCLKTMQGHDH--NVTGVAFLPNSDFVL-SASRDKTIKMW 217
             +++ +    L + D       K +   D           P       + ++ +++   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 218 EVATGYCVKTLTGHREW-----VRQIKVSPDGTLLASCSNDHTARVWSLATKE------- 265
           ++ TG  +  +           +    +SPDG  LA   +     +     +        
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 266 ----TKAELRGHDHTVECVAWAPG---VASESISEAAGRPPGQGGGPYLATGSRDKTIKL 318
               ++ +       +  +AWA     +           P            S +     
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 319 WDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
                                 T                L   D      M   E     
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET-GEMAMREVRIMD 240

Query: 379 VTSLDFHRAHPYVVTGSVDKTVKVW 403
           V                    ++ +
Sbjct: 241 VFYFSTAVNPAKTRAFGAYNVLESF 265

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 69.8 bits (169), Expect = 8e-14
 Identities = 25/209 (11%), Positives = 53/209 (25%), Gaps = 9/209 (4%)

Query: 203 DFVLSASRDKTIKMWEVATGYCVKTLT--GHREWVRQIKVSPDG-TLLASCSNDHTARVW 259
           D++L+ +R   + + +       K +T            V+P G    A+ +   +    
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLW 319
            L T ET   +          +      S      A                +   + L+
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH-FEVQPTRVALY 120

Query: 320 DVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSH-- 377
           D  + S           +  + +   G  L   G D  +   +       K +++     
Sbjct: 121 DAETLSRRKA-FEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET 179

Query: 378 --FVTSLDFHRAHPYVVTGSVDKTVKVWE 404
                 L     H      +        +
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKD 208

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (263), Expect = 3e-26
 Identities = 32/329 (9%), Positives = 84/329 (25%), Gaps = 41/329 (12%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE---RALHGHLDSVQDIAF-D 157
               +  +  +   P  SL+   S D ++ ++ ++             +   +    F D
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 158 QSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK-TIKM 216
            +   +   +    +   D+      + +  ++ N+         D  L A+     I++
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 217 WEVATGYCVKTLTGHREWVRQ------IKVSPDGTLLASCSNDHTARVWSLATKETKAEL 270
            +            +              +  + + L    N+   + + L   E     
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186

Query: 271 RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL 330
                    +     +                     A  S D  + +         +  
Sbjct: 187 IEESGLKYQIRDVALL--------------PKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232

Query: 331 ---------------IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH 375
                                V  + F P  K+L + G D  +  W+   ++ +K     
Sbjct: 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292

Query: 376 SHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
            +  + +    +   +   + D T K   
Sbjct: 293 -NEDSVVKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.3 bits (170), Expect = 6e-14
 Identities = 18/146 (12%), Positives = 40/146 (27%), Gaps = 20/146 (13%)

Query: 105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE---------------YERALHGHLD 149
                   +        A  S D  + +  ++                            
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 150 SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS 209
            V  I F    K L +  +D  +  W++ T + +K      +  + V    + + +  A+
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLAT 311

Query: 210 RDKTIKMWEVATGYCVKTLTGHREWV 235
            D T K          +T+  +   +
Sbjct: 312 SDDTFKTN----AAIDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.9 bits (169), Expect = 7e-14
 Identities = 18/170 (10%), Positives = 46/170 (27%), Gaps = 20/170 (11%)

Query: 114 FHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDS----VQDIAFDQSGKLLVSCSAD 169
                S +     ++ ++ +     E +                    +  +     S D
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID 215

Query: 170 MSLKLWDMST---------------YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTI 214
             + +                    ++         + V  + F P   F+ +A  D  I
Sbjct: 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII 275

Query: 215 KMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATK 264
             W + T   +K           +K++    +L   ++D T +  +   +
Sbjct: 276 SCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAIDQ 324

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 4e-13
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 224 CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR---GHDHTVECV 280
            V+     ++++  IK+ P  +LL   S D +  V+    +    +L     + H + C 
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 281 AWAP 284
            +  
Sbjct: 63  NFID 66

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (144), Expect = 9e-11
 Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 4/79 (5%)

Query: 332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA---HSHFVTSLDFHRAH 388
              +++  +   P    L+    D +L V+    +     L     + H +   +F    
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 389 P-YVVTGSVDKTVKVWECR 406
              +  G+V   +   +  
Sbjct: 69  DLQIYVGTVQGEILKVDLI 87

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 2e-10
 Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 5/114 (4%)

Query: 76  EYVEGAPTRAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDY 135
           E+ +        S              +    PV  + F P    + +   D  I  W+ 
Sbjct: 221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280

Query: 136 ETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGH 189
           +T +  +      +    +    S  +L   ++D + K          +T++ +
Sbjct: 281 QTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNA----AIDQTIELN 329

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 4/37 (10%), Positives = 17/37 (45%)

Query: 370 KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR 406
           +  +A   +++ +    +   ++  S D ++ V++  
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD 41

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  103 bits (257), Expect = 2e-25
 Identities = 47/309 (15%), Positives = 89/309 (28%), Gaps = 9/309 (2%)

Query: 103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE--RALHGHLDSVQDIAFDQSG 160
           S    P+    ++   + +A C  +  + +++    ++     L  H   V  + +    
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 161 KLLVSCSADMSLKLWDMSTYQCLKTMQGHDH--NVTGVAFLPNSDFVLSASRDKTIKMWE 218
             +V+C  D +  +W +       T+           V + PN       S  + I +  
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 219 VAT----GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHD 274
                    C       R  V  +   P+  LLA+ S D   R++S   KE +       
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

Query: 275 HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD 334
              +         S S             G  +A  S D T+ L D      + TL    
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243

Query: 335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG 394
             +  VTF      + +  D     ++   +     +                       
Sbjct: 244 LPLLAVTFITESSLVAAGHDCFP-VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQ 302

Query: 395 SVDKTVKVW 403
           ++DK     
Sbjct: 303 NLDKKASSE 311

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.2 bits (214), Expect = 1e-19
 Identities = 43/330 (13%), Positives = 91/330 (27%), Gaps = 48/330 (14%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE--RALHGHLDSVQDIAFDQS 159
           L  H   V  V + P  + + +C  D    +W  +   ++    +     + + + +  +
Sbjct: 47  LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 106

Query: 160 GKLLVSCSADMSLKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIK 215
            K     S    + +           C    +     V  + + PNS  + + S D   +
Sbjct: 107 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 166

Query: 216 MWEVATG------------------YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTAR 257
           ++                         +   +    WV  +  S +G+ +A  S+D T  
Sbjct: 167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC 226

Query: 258 VWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIK 317
           +     K   A L      +  V +                        +A G  D    
Sbjct: 227 LADADKKMAVATLASETLPLLAVTFIT------------------ESSLVAAGH-DCFPV 267

Query: 318 LWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSH 377
           L+   S +   +  G  +  +  +             DK      +A          H +
Sbjct: 268 LFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA-AAGAGLDSLHKN 326

Query: 378 FVTSLDFHRAHPY----VVTGSVDKTVKVW 403
            V+ +              T  +D  + +W
Sbjct: 327 SVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.1 bits (193), Expect = 7e-17
 Identities = 44/265 (16%), Positives = 77/265 (29%), Gaps = 48/265 (18%)

Query: 105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV 164
            RS V+ + +HP   L+A+ S D   R++     E                        V
Sbjct: 140 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE------------------------V 175

Query: 165 SCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYC 224
                 +     M   + +         V GV F  N   V   S D T+ + +      
Sbjct: 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235

Query: 225 VKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAP 284
           V TL      +  +    + +L+A+  +     +++  +   K    G     +  +   
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGHDCFP-VLFTYDSAAGKLSFGGRLDVPKQSSQRG 294

Query: 285 GVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHP 344
             A E                  + GS      L              H N V  ++   
Sbjct: 295 LTARERF--------QNLDKKASSEGSAAAGAGLDS-----------LHKNSVSQISVLS 335

Query: 345 GGKY----LVSCGDDKTLRVWDTAN 365
           GGK       + G D  + +WD  +
Sbjct: 336 GGKAKCSQFCTTGMDGGMSIWDVRS 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  101 bits (251), Expect = 2e-24
 Identities = 36/312 (11%), Positives = 79/312 (25%), Gaps = 22/312 (7%)

Query: 104 GHRSPVIKVIFHPVFSLMASCSED--ATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
                +  V       +           + ++DY TG+       +L +V  +  D++GK
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGK 98

Query: 162 LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSA----------SRD 211
             V  +    +   D+ T +     +  +  +T      NS F+                
Sbjct: 99  FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158

Query: 212 KTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR 271
           + I ++++         T             D   L   S                 E+ 
Sbjct: 159 QAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

Query: 272 GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI 331
                +  +  +P                + G   L    +  +    D G   ++  L 
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSM----TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273

Query: 332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYV 391
                           Y     +   L  +D   ++    +    + +T L        V
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTV 329

Query: 392 VTGSVDKTVKVW 403
           +    D  +  +
Sbjct: 330 MVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 93.0 bits (229), Expect = 1e-21
 Identities = 29/298 (9%), Positives = 67/298 (22%), Gaps = 31/298 (10%)

Query: 92  WIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSV 151
           +  R  +      +   V  +            ++   I   D ETG+           +
Sbjct: 71  YDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI 130

Query: 152 QDIAFDQSGKLLVSCSADMSLKLWDMST---------YQCLKTMQGHDHNVTGVAFLPNS 202
            D     + + +         +                + +      + +    AF  +S
Sbjct: 131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADS 190

Query: 203 DFVLSASRDKTIKMWEVATGYC-------VKTLTGHREWVRQIKVSPDGTLLASCSNDHT 255
             +   S        +                +          K+ P      +   D  
Sbjct: 191 KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 250

Query: 256 ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT 315
                          R     V+   +   +  ES       P       Y         
Sbjct: 251 DMYK-----------RSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV 299

Query: 316 IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE 373
           +  +DV +      +    N +  +      K ++   DD  +  +      + +T+E
Sbjct: 300 LLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 84.5 bits (207), Expect = 1e-18
 Identities = 29/302 (9%), Positives = 63/302 (20%), Gaps = 29/302 (9%)

Query: 119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD--MSLKLWD 176
            L+A  S      + D       +        ++ +      K+           L ++D
Sbjct: 16  DLIAFVSRG-QAFIQDVSGTYVLKVPEP--LRIRYVRRGGDTKVAFIHGTREGDFLGIYD 72

Query: 177 MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVR 236
             T +  +  + +  NV  +    N  F + A+    I   ++ TG            + 
Sbjct: 73  YRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 131

Query: 237 QIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAG 296
              +S +   +A               +                                
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD---------Y 182

Query: 297 RPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF-------TLIGHDNWVRGVTFHPGGKYL 349
            P        L   S        D    +  F        +             P     
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242

Query: 350 VS-------CGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKV 402
            +            +    D  + R +  LE+     +         Y         +  
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 302

Query: 403 WE 404
           ++
Sbjct: 303 YD 304

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.8 bits (135), Expect = 1e-09
 Identities = 22/253 (8%), Positives = 48/253 (18%), Gaps = 47/253 (18%)

Query: 196 VAFLP-NSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH 254
             F P + D +   SR +   + +V+  Y +K        +R ++   D  +        
Sbjct: 8   EDFSPLDGDLIAFVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTRE 64

Query: 255 --TARVWSLATKETKAELRGH---------------------------DHTVECVAWAPG 285
                ++   T + +                                 D           
Sbjct: 65  GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124

Query: 286 VASESISEAAGRPPGQ------GGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRG 339
                I++       +              G   + I ++D+    +       ++    
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYA 183

Query: 340 VTFHPGGKYLVSCGDDKTLRVWDTANKRNM-------KTLEAHSHFVTSLDFHRAHPYVV 392
             F    K L            D                +                    
Sbjct: 184 PAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE 243

Query: 393 TGSVDKTVKVWEC 405
            G  D        
Sbjct: 244 AGEYDLNDMYKRS 256

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 6/50 (12%), Positives = 17/50 (34%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSV 151
           ++  ++ +  +        +    +D  I  +  E  E ER +      +
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 98.5 bits (244), Expect = 2e-23
 Identities = 26/278 (9%), Positives = 66/278 (23%), Gaps = 23/278 (8%)

Query: 118 FSLMASCSEDATIRLWDYETGEYERALHGH-------LDSVQDIAFDQSGK-LLVSCSAD 169
           F+  A       + ++D  T      +             V  I    S   LL      
Sbjct: 86  FARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS 145

Query: 170 MSLKLWDMSTYQCLKTMQG-------HDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG 222
            +     +      +  +             T       +    S           V   
Sbjct: 146 SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA- 204

Query: 223 YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAW 282
              +         +  + +  G L+ + ++         A    KA + G++   +   +
Sbjct: 205 ---QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNF 261

Query: 283 AP-GVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT 341
              G    +  +              +  +  +         G      I + +    + 
Sbjct: 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP-ISNGHDSDAII 320

Query: 342 FHPGGKYL--VSCGDDKTLRVWDTANKRNMKTLEAHSH 377
               G      +    + L ++D A+ ++  ++E    
Sbjct: 321 AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 77.3 bits (189), Expect = 3e-16
 Identities = 23/287 (8%), Positives = 57/287 (19%), Gaps = 49/287 (17%)

Query: 143 ALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW--DMSTYQCLKTMQGHDHNVTGVAFLP 200
           A  G        A  +   + +      + + W         L    G   +        
Sbjct: 17  ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGH 74

Query: 201 NSDF----------VLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG------ 244
           +                  R   +++++  T   +  +         +            
Sbjct: 75  SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134

Query: 245 --TLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQG 302
              LL        A   S+         +       C    P                 G
Sbjct: 135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSAS----CFHIHP-----------------G 173

Query: 303 GGPYLATGSRDKTIKLWDVGSGS------LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDK 356
                  GS   ++   D+ +                +   +    +  G  + +     
Sbjct: 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSI 233

Query: 357 TLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
                  A       ++ +     + +F  A   +V    +    + 
Sbjct: 234 LQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 13/141 (9%), Positives = 26/141 (18%), Gaps = 21/141 (14%)

Query: 283 APGVASESISEAAGRPPGQGGGPYL-ATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT 341
           A   +  S  +       +     L A  +      +   G G  L   +G   ++    
Sbjct: 14  AAAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA--FLSLAV 71

Query: 342 FHPGGKYL----------VSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYV 391
               G                     + V+D      +  +E       S+         
Sbjct: 72  AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131

Query: 392 --------VTGSVDKTVKVWE 404
                                
Sbjct: 132 CASSACLLFFLFGSSAAAGLS 152

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 96.8 bits (239), Expect = 6e-23
 Identities = 33/293 (11%), Positives = 72/293 (24%), Gaps = 33/293 (11%)

Query: 118 FSLMASCSEDATIRLWDYETGEYERALHGH-------LDSVQDIAFDQSGKLLV--SCSA 168
           FS +A       + ++D  T      +                 +    GK L+    S 
Sbjct: 68  FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP 127

Query: 169 DMSLKLWDMSTYQCLKTMQGHDH-------NVTGVAFLPNSDFVLSAS-RDKTIKMWEVA 220
             ++ + D+      + +   D          T      +      A   + T ++    
Sbjct: 128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 187

Query: 221 TGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECV 280
             +           +     S     L   +         L++ + K        T    
Sbjct: 188 VFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER 242

Query: 281 AWAPGVASESISEAAGRPPGQG------GGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD 334
           A   G       + A                     +  + + + D  +G  L       
Sbjct: 243 A--DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK-FEMG 299

Query: 335 NWVRGVTFHPGGKYL--VSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFH 385
           + +  +      K L       DKTL + D  +   ++++    H    +   
Sbjct: 300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA 352

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 83.3 bits (204), Expect = 2e-18
 Identities = 33/312 (10%), Positives = 72/312 (23%), Gaps = 33/312 (10%)

Query: 122 ASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSA----------DMS 171
           A  +      + D E G     + G    + +      G  +   S              
Sbjct: 22  AHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDY 79

Query: 172 LKLWDMSTYQCLKTMQGHDHNVTGVAFLPNS---------DFVLSASRDKTIKMWEVATG 222
           ++++D  T      ++  D     V   P                 S    + + ++   
Sbjct: 80  VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139

Query: 223 YCVKTLTGHREW-------VRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDH 275
              + L     +               DG+L    +           T+    E     +
Sbjct: 140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKV-AFGTEGTPEITHTEVFHPEDEFLIN 198

Query: 276 TVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI-GHD 334
                  A  +   + +    +     G           T      G     +  +  H 
Sbjct: 199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 258

Query: 335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR--AHPYVV 392
              R                 + + V D      +   E   H + S++  +        
Sbjct: 259 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYA 317

Query: 393 TGSVDKTVKVWE 404
             + DKT+ + +
Sbjct: 318 LSTGDKTLYIHD 329

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 77.1 bits (188), Expect = 3e-16
 Identities = 33/292 (11%), Positives = 76/292 (26%), Gaps = 52/292 (17%)

Query: 85  AKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERAL 144
               PT  I        L G    +  +       L    S    + + D E   ++R L
Sbjct: 86  VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML 145

Query: 145 HGH-------LDSVQDIAFDQSGK-LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGV 196
                               + G    V+   + + ++     +         +  +   
Sbjct: 146 DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHP 200

Query: 197 AFLPNSDFVLSASRDKTIKMWEVATG--YCVKTLTGHREWV----------RQIKVSPDG 244
           A+   +  ++  +    I   ++++G    +  +    E            +Q+      
Sbjct: 201 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 260

Query: 245 TLL----------ASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEA 294
             +             +      V    T E  A+     H ++ +  +           
Sbjct: 261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQD--------- 310

Query: 295 AGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGG 346
                        A  + DKT+ + D  SG  L ++    +  + +T    G
Sbjct: 311 -------EKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.8 bits (156), Expect = 4e-12
 Identities = 29/239 (12%), Positives = 61/239 (25%), Gaps = 39/239 (16%)

Query: 190 DHNVTGVAFLPNSDFVL-----SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG 244
           D      A  P++  V        +      + +   G  +  + G   ++    V+ DG
Sbjct: 1   DEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDG 58

Query: 245 TLLASCSN----------DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEA 294
           + +A  S                V+   T    A++   D     V   P + S +    
Sbjct: 59  SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT---- 114

Query: 295 AGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNW-------VRGVTFHPGGK 347
                  G        S    + + D+   +    L   D +                G 
Sbjct: 115 -----PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGS 169

Query: 348 YL-VSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC 405
              V+ G + T  +  T               +    + +    +V  +    +   + 
Sbjct: 170 LAKVAFGTEGTPEITHTE-----VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL 223

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 95.0 bits (234), Expect = 1e-22
 Identities = 37/300 (12%), Positives = 75/300 (25%), Gaps = 8/300 (2%)

Query: 106 RSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVS 165
           R   + +   P    +  C+   ++      +         H           SG    S
Sbjct: 17  RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75

Query: 166 CSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV 225
                ++++WD +    +                P  D    +   +   + E    +  
Sbjct: 76  GDVHGNVRIWDTTQTTHILKTTIPVF------SGPVKDISWDSESKRIAAVGEGRERFGH 129

Query: 226 KTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPG 285
             L         +                  R+ S +   T A   G     +       
Sbjct: 130 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT 189

Query: 286 VASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPG 345
               S+            G        +                 + H   V G+T+ P 
Sbjct: 190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 249

Query: 346 GKYLVSCGDDKTLRVWDTANKRNMKTLEAHS-HFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
           G  + S   DKT+++W+ A  +  KT+   +      L        +V+ S +  +    
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 85.0 bits (208), Expect = 4e-19
 Identities = 40/267 (14%), Positives = 82/267 (30%), Gaps = 17/267 (6%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY-----ERALHGHLDSVQDIAF 156
            + H          P     AS      +R+WD     +          G +  +   + 
Sbjct: 54  YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE 113

Query: 157 DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKM 216
            +    +              +               +          ++S S D T+ +
Sbjct: 114 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 173

Query: 217 WEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHT 276
           +E        T   H ++V  ++ +PDG+L AS   D T  +++                
Sbjct: 174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 233

Query: 277 VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL-IGHDN 335
               + +    + S             G  +A+ S DKTIK+W+V +  +  T+ +G   
Sbjct: 234 NVAHSGSVFGLTWSPD-----------GTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 336 WVRGVTFHPGGKYLVSCGDDKTLRVWD 362
             + +      + LVS   +  +   +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.5 bits (142), Expect = 2e-10
 Identities = 39/250 (15%), Positives = 69/250 (27%), Gaps = 37/250 (14%)

Query: 193 VTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN 252
              +   P  D +   +   ++    V +    +  T H       K SP G   AS   
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 253 DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR 312
               R+W         +      +      +    S+ I+         G      TG+ 
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138

Query: 313 DKTIKLWDVGSGSLLFTLIGHD-----------------------------NWVRGVTFH 343
           +  +        S+ F                                    +V  V ++
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198

Query: 344 PGGKYLVSCGDDKTLRVWDTANKRNMKT-------LEAHSHFVTSLDFHRAHPYVVTGSV 396
           P G    S G D T+ +++  +               AHS  V  L +      + + S 
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 258

Query: 397 DKTVKVWECR 406
           DKT+K+W   
Sbjct: 259 DKTIKIWNVA 268

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.0 bits (138), Expect = 5e-10
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 1/92 (1%)

Query: 87  RSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHG 146
              T+      +      H   V  + + P  + +AS S D TI++W+  T + E+ +  
Sbjct: 219 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 278

Query: 147 HLD-SVQDIAFDQSGKLLVSCSADMSLKLWDM 177
                 Q +    + + LVS SA+  +   + 
Sbjct: 279 GTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.5 bits (230), Expect = 4e-22
 Identities = 39/287 (13%), Positives = 78/287 (27%), Gaps = 36/287 (12%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK 161
           +SGH   +  +  +P+     S S D  I  W   +         H + +  +   ++ +
Sbjct: 9   ISGHNKGITALTVNPL----ISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQE 59

Query: 162 LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT 221
                  D              +      +N    A L N D +L         +  V  
Sbjct: 60  YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119

Query: 222 GYCVKT---------LTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRG 272
                          +        Q+    D  +         A+   ++   ++  +  
Sbjct: 120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA 179

Query: 273 ----------------HDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTI 316
                              +      +   A        G    +     +ATGS D  I
Sbjct: 180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 239

Query: 317 KLWDVGS-GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
            ++ V     ++  L  H + V  + +      LVS G D  ++ W+
Sbjct: 240 FIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (133), Expect = 2e-09
 Identities = 28/251 (11%), Positives = 59/251 (23%), Gaps = 34/251 (13%)

Query: 181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKV 240
           + LKT+ GH+  +T +   P    ++S S D  I  W  ++ +       H   +  +  
Sbjct: 4   EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDN 54

Query: 241 SPDGTLLASCSNDHTARVWS--------------------LATKETKAELRGHDHTVECV 280
           S      +   +D                                    L     T + +
Sbjct: 55  SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114

Query: 281 AWAPGVASESISEAAGRPPGQGGGPYLAT-----GSRDKTIKLWDVGSGSLLFTLIGHDN 335
                 +  S    +      G               + +  L         +  I    
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174

Query: 336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGS 395
                    G   L      +            +  +        + +       V TGS
Sbjct: 175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234

Query: 396 VDKTVKVWECR 406
           +D  + ++  +
Sbjct: 235 LDTNIFIYSVK 245

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (131), Expect = 3e-09
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 322 GSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTS 381
           G   +L T+ GH+  +  +T +P    L+S   D  +  W ++        + HS+ + S
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS-----SMHQDHSNLIVS 51

Query: 382 LDFHRAHPYVVTGSVDKTVKVWEC 405
           LD  +A  Y      D        
Sbjct: 52  LDNSKAQEYSSISWDDTLKVNGIT 75

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.3 bits (123), Expect = 3e-08
 Identities = 18/159 (11%), Positives = 41/159 (25%), Gaps = 31/159 (19%)

Query: 175 WDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREW 234
                              + ++  P+  ++ +      I ++++ +     +    R  
Sbjct: 147 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS 206

Query: 235 VRQIK-----------VSPDGTLLASCSNDHTARVWSLATKETKAE-LRGHDHTVECVAW 282
                              +  L+A+ S D    ++S+       + L  H   V  + W
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266

Query: 283 APGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDV 321
                                   L +   D  IK W+V
Sbjct: 267 ETP-------------------STLVSSGADACIKRWNV 286

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.9 bits (226), Expect = 2e-21
 Identities = 33/311 (10%), Positives = 84/311 (27%), Gaps = 9/311 (2%)

Query: 103 SGHRSPVIKVIFHPVFSLMASCSEDAT-IRLWDYETGEYE--RALHGHL-DSVQDIAF-- 156
           S  R+    + + P  + +A     +  +R  D    +        GH    V  + F  
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 157 DQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKM 216
            +  + L S      + +W  +  +   +++ +  +   V   P SD        +   +
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133

Query: 217 WEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHT 276
            E    + V         + ++                  R  ++    +    +G    
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193

Query: 277 VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNW 336
                         + +    P        + +  +              +         
Sbjct: 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 253

Query: 337 VRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLD---FHRAHPYVVT 393
                     +   + G D T+RVWD    + ++        + +         +  +++
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313

Query: 394 GSVDKTVKVWE 404
            S+D T+  +E
Sbjct: 314 LSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 4e-13
 Identities = 37/298 (12%), Positives = 75/298 (25%), Gaps = 78/298 (26%)

Query: 87  RSPTEWIPRAPEKFALSGHRSPVIKVI-FHPVFS--LMASCSEDATIRLWDYETGEYERA 143
           R   +   + P     +GH S V+  + F P+     + S  E   + +W +   +   +
Sbjct: 43  RCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS 102

Query: 144 LH--------GHLDSVQDIAFDQSGKLLVSCSA--DMSLKLWDMSTYQCLKTMQGHDHNV 193
           +              + DI++D  G+ L       D         +   L  + GH   +
Sbjct: 103 VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRI 162

Query: 194 TGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT----GHREWVRQIKVSP------- 242
                  +         D    ++     +              +VR ++ SP       
Sbjct: 163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 222

Query: 243 ---------------------------------------DGTLLASCSNDHTARVWSLAT 263
                                                  D    A+   D T RVW + T
Sbjct: 223 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT 282

Query: 264 KETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDV 321
            +   +       +                         G   + + S D T+  +++
Sbjct: 283 SKCVQKWTLDKQQLGNQQVGVVAT---------------GNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.6 bits (155), Expect = 4e-12
 Identities = 33/276 (11%), Positives = 64/276 (23%), Gaps = 34/276 (12%)

Query: 151 VQDIAFDQSGKLLVSCSAD-MSLKLWD--MSTYQCLKTMQGHDHN-VTGVAFLPNSD--F 204
              +++D +   +         ++  D   S    +    GH  + VT V F P     +
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 205 VLSASRDKTIKMWEVATGYCVKTL--------TGHREWVRQIKVSPDGTLLASCSN--DH 254
           + S      + +W         ++              +  I    +G  L       D+
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139

Query: 255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK 314
                S  +  +  E+ GH   +            S++                      
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF------------- 186

Query: 315 TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA 374
             +       +   T     ++VR V F P     V                        
Sbjct: 187 -YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 245

Query: 375 HSHFVTSLDFHRAHP----YVVTGSVDKTVKVWECR 406
                                 T   D T++VW+  
Sbjct: 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT 281

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 90.6 bits (224), Expect = 2e-20
 Identities = 35/266 (13%), Positives = 74/266 (27%), Gaps = 14/266 (5%)

Query: 146 GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFV 205
               + Q   +D      V+      + L D STY+    +    + V       +  ++
Sbjct: 18  EDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYL 76

Query: 206 LSASRDKTIKMWEVATG-----YCVKTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVW 259
               RD  + M ++          +K  +  R          +    +A         + 
Sbjct: 77  FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136

Query: 260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLW 319
              T E K        T +   + P     +I  +  RP       ++        I L 
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP------EFIVNVKETGKILLV 190

Query: 320 DVGSGSLL-FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF 378
           D    + L  T I  + ++         +Y ++  + +   V     +  +  +E     
Sbjct: 191 DYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 250

Query: 379 VTSLDFHRAHPYVVTGSVDKTVKVWE 404
                      +   G V  T  + +
Sbjct: 251 TPHPGRGANFVHPTFGPVWATSHMGD 276

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 74.8 bits (183), Expect = 3e-15
 Identities = 31/345 (8%), Positives = 63/345 (18%), Gaps = 55/345 (15%)

Query: 112 VIFHPVFSLMASCSEDATIRLWDYETGEYE-----RALHGHLDSVQDIAFDQSGKLL-VS 165
                    +     D  + + D    E       +                  K     
Sbjct: 67  SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAG 126

Query: 166 CSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSD------------FVLSASRDKT 213
                   + D  T +  K             + P               F+++      
Sbjct: 127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 186

Query: 214 IKMWEVATGYCVKTLT-GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRG 272
           I + +      +KT       ++    +        + +N     V     +     +  
Sbjct: 187 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 246

Query: 273 HDHTVECVAWAPGVA-SESISEAAGRPPGQGGGPYLATGSRDKTIKLWDV-----GSGSL 326
                                  A    G      + T         W +       G  
Sbjct: 247 TGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG 306

Query: 327 LFTLIGHDNWVRGVT--------------FHPGGKYLVSCGDDKTLRVWDTANKRNMKTL 372
              +  H N                         K +   G D   +    A       +
Sbjct: 307 SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIA---EWAGI 363

Query: 373 EAHSHFVTSLDFHRAHPYVVTGSV-------------DKTVKVWE 404
                 V   +F++    V                  DKT+++  
Sbjct: 364 TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH 408

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.9 bits (139), Expect = 7e-10
 Identities = 34/322 (10%), Positives = 76/322 (23%), Gaps = 58/322 (18%)

Query: 101 ALSGHRSPVIKVIFHPVFS-LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQS 159
             S  RS     +        +A         + D ET E ++       +  +  +   
Sbjct: 103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE 162

Query: 160 GK------------LLVSCSADMSLKLWDMSTYQCLK-TMQGHDHNVTGVAFLPNSDFVL 206
            +             +V+      + L D +    LK T    +  +       +  + +
Sbjct: 163 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI 222

Query: 207 SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG-------------------TLL 247
           +A+  +   +        +  +              +                     L+
Sbjct: 223 TAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALI 282

Query: 248 ASCSNDHTARVWSLATK-----ETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQG 302
            +    H    W +             ++ H ++      A       IS +      + 
Sbjct: 283 GTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK- 341

Query: 303 GGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYL-VSCG-------- 353
               +     D   K   +   +    +      V    F+  G  +  S          
Sbjct: 342 ---AMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESA 395

Query: 354 ----DDKTLRVWDTANKRNMKT 371
               DDKTL +        + T
Sbjct: 396 LVVVDDKTLELKHVIKDERLVT 417

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (126), Expect = 3e-08
 Identities = 24/233 (10%), Positives = 50/233 (21%), Gaps = 18/233 (7%)

Query: 112 VIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMS 171
                      + +      +          A+              +           +
Sbjct: 212 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT 271

Query: 172 LKLWD---MSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL 228
             + D          +    +   +           +   +   +  ++  AT      L
Sbjct: 272 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT------L 325

Query: 229 TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVAS 288
               E    + V  D   +    +D   +   +A     A +      V    +      
Sbjct: 326 NPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEW---AGITEGQPRVVQGEFNKDGTE 381

Query: 289 ESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVT 341
              S   G+               DKT++L  V     L T  G  N    +T
Sbjct: 382 VWFSVWNGKDQESALVVV-----DDKTLELKHVIKDERLVTPTGKFNVYNTMT 429

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 18/144 (12%), Positives = 41/144 (28%), Gaps = 25/144 (17%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIA-FDQSG 160
              +   ++          +   +   +  L+       +  L+   +    +A FD   
Sbjct: 289 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV------DATLNPEAEISGSVAVFD--I 340

Query: 161 KLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS----------- 209
           K +    +D   K   ++ +  +         V    F  +   V  +            
Sbjct: 341 KAMTGDGSDPEFKTLPIAEWAGIT---EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALV 397

Query: 210 --RDKTIKMWEVATGYCVKTLTGH 231
              DKT+++  V     + T TG 
Sbjct: 398 VVDDKTLELKHVIKDERLVTPTGK 421

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 86.6 bits (212), Expect = 1e-19
 Identities = 38/290 (13%), Positives = 69/290 (23%), Gaps = 30/290 (10%)

Query: 102 LSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERAL-HGHLDSVQDIAFDQSG 160
             GH   +  +        + S   +  I  WD  TG   R     H   +  I     G
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67

Query: 161 KLLVSCSADMSLKLWDMSTYQ---CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMW 217
            L  + S D  LK+                       G+A   + D  ++A         
Sbjct: 68  DL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 218 EVATGYCVKTLTGHREWVRQIKVSPDGTLL-----------------------ASCSNDH 254
                    +       +   K                               A  ++  
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDK 314
            +   +      ++              A   +    +              LATGS D 
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246

Query: 315 TIKLWDVGSGSL--LFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWD 362
           ++ +W++   S   +     H               +VS G D  ++ W+
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 85.4 bits (209), Expect = 3e-19
 Identities = 37/294 (12%), Positives = 79/294 (26%), Gaps = 28/294 (9%)

Query: 138 GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM-QGHDHNVTGV 196
           G  ++  +GH  ++  ++    GK L S  A+  +  WD+ST    +     H   +TG+
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 197 AFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTA 256
                 D    +  D    +    +G        ++   + + ++       + +  +  
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121

Query: 257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTI 316
                  K T+  +  +   V        VA              G              
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181

Query: 317 KLWDVGSGSLLFTLIGHDNWVRGVTFH-------------------------PGGKYLVS 351
                 S +  F +    +                                 P    L +
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241

Query: 352 CGDDKTLRVWD--TANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
              D ++ VW+    +   +    AH+    +         +V+   D  +K W
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.0 bits (130), Expect = 5e-09
 Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 175 WDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT--GHR 232
            +        +   H   V  V++ P++  + + S D ++ +W +        +    H 
Sbjct: 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 268

Query: 233 EWVRQIKVSPDGTLLASCSNDHTARVWSL 261
                  +  + T + S   D   + W++
Sbjct: 269 MSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.1 bits (125), Expect = 2e-08
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 114 FHPVFSLMASCSEDATIRLWDYETGEYER--ALHGHLDSVQDIAFDQSGKLLVSCSADMS 171
           + P    +A+ S D ++ +W+              H  S  +     +   +VS   D +
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN 291

Query: 172 LKLWDMS 178
           +K W++ 
Sbjct: 292 IKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.1 bits (112), Expect = 7e-07
 Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 22/109 (20%)

Query: 216 MWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDH 275
           +          + T H   V  +  SPD   LA+ S D++  VW++        +    H
Sbjct: 208 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 267

Query: 276 T---VECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDV 321
               V  V W                        + +  +D  IK W+V
Sbjct: 268 AMSSVNSVIWLNE-------------------TTIVSAGQDSNIKFWNV 297

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 78.8 bits (192), Expect = 5e-17
 Identities = 39/296 (13%), Positives = 80/296 (27%), Gaps = 38/296 (12%)

Query: 123 SCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGK-LLVSCSADMSLKLWDMSTYQ 181
           + SE   I + D  + +    +     +         G  + V+ +    + + D +T  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 182 CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVS 241
            + T+                   ++     T+ + +  +     T     +    + +S
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-VKTGKSPLGLALS 124

Query: 242 PDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPG---------------- 285
           PDG  L   +N            +          + + +A  P                 
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184

Query: 286 -----------VASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD 334
                      V  E+        P               T+ + D G+  +   +    
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG- 243

Query: 335 NWVRGVTFHPGGKYL-VSCGDDKTLRVWDTANKRNMKTLE------AHSHFVTSLD 383
               G+   P GK + V+     T+ V DTA      T+       A   F+ S+ 
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPYASGQFIGSIP 299

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 55.3 bits (131), Expect = 3e-09
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 2/83 (2%)

Query: 309 TGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYL-VSCGDDKTLRVWDTANKR 367
             S    I + DV S  +  T+    N   G    P G  + V+      + + DTA   
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 368 NMKTLEAHSHFVTSLDFHRAHPY 390
            + T+ A S              
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQV 88

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 350 VSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYV-VTGSVDKTVKVW 403
           ++  +   + V D  + +   T+   S+             V V  +    V + 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSII 59

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 75.0 bits (183), Expect = 2e-15
 Identities = 36/327 (11%), Positives = 74/327 (22%), Gaps = 35/327 (10%)

Query: 112 VIFHPVFSLMASCSEDATIRLWDYETGEYE-----RALHGHLDSVQDIAFDQSGK-LLVS 165
                    +     DA I + D    E       +                  +  +  
Sbjct: 67  SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAG 126

Query: 166 CSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSD-FVLSASRDKTIKMWEVATGYC 224
                   + D  T +  + +      V    + P      + AS +    +  V     
Sbjct: 127 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 186

Query: 225 VKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAP 284
           V  +         +        LA    D + R +  A   +              A   
Sbjct: 187 VLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 246

Query: 285 GVASESISEAAGRPPGQGGGPYLATGSRDKTI-------KLWDVGSGSLLFTLIGHDNWV 337
              +      A     + G  +  +   D +I       K     +   +  L G     
Sbjct: 247 VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS 306

Query: 338 RGVTFHPGGKYLV-------SCGDDKTLRVWDTAN---------KRNMKTLEAHSHFVTS 381
             +  HP   +L             +++ V+D  N               L   +  V  
Sbjct: 307 LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ 366

Query: 382 LDFHRAHPYVV-----TGSVDKTVKVW 403
            ++++    V        +    + V 
Sbjct: 367 PEYNKRGDEVWFSVWNGKNDSSALVVV 393

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 74.2 bits (181), Expect = 4e-15
 Identities = 33/243 (13%), Positives = 71/243 (29%), Gaps = 13/243 (5%)

Query: 154 IAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKT 213
              D      V+      + L D  + + +K +      V       +  ++L   RD  
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDAR 84

Query: 214 IKMWEVATGYC-----VKTLTGHREWVRQIKVSPDGT-LLASCSNDHTARVWSLATKETK 267
           I M ++          +K     R          +    +A         +    T E K
Sbjct: 85  IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144

Query: 268 AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLL 327
             +     TV+   + P     +I  +   P        +      K + +      +L 
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHP-----EFIVNVKETGKVLLVNYKDIDNLT 199

Query: 328 FTLIGHDNWVRGVTFHPGGKY-LVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
            T IG   ++    +    +Y + +  +   + V D+ ++R    ++           + 
Sbjct: 200 VTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 259

Query: 387 AHP 389
            HP
Sbjct: 260 VHP 262

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 71.1 bits (173), Expect = 4e-14
 Identities = 35/306 (11%), Positives = 87/306 (28%), Gaps = 24/306 (7%)

Query: 120 LMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST 179
              +  +   I L D ++ +  + +     +V       SG+ L+    D  + + D+  
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWA 92

Query: 180 YQC-----LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREW 234
            +      +K         +         + ++ +                K +   R  
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 235 VRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEA 294
               +       +A+    H    + +  KET   L  +   ++ +      A+  +++ 
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212

Query: 295 AGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTF---HPGGKYLVS 351
                 +      A  S    +        S L  +    +  RG  F     G  +  S
Sbjct: 213 GWDSSHRYFMTA-ANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS 271

Query: 352 CGDDKTLRVWDTANKRN-------MKTLEAHSHFVTSLDFHRAHPYVV-------TGSVD 397
              D ++ +  T  K +       +  L+        +  H    ++           + 
Sbjct: 272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS 331

Query: 398 KTVKVW 403
           ++V V+
Sbjct: 332 QSVAVF 337

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 66.5 bits (161), Expect = 1e-12
 Identities = 22/218 (10%), Positives = 51/218 (23%), Gaps = 26/218 (11%)

Query: 194 TGVAFLPNSD--FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS 251
                  +    F ++      I + +  +   VK +      V   ++S  G  L    
Sbjct: 22  KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIG 80

Query: 252 NDHTARVWSLATKETKAELR-----GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPY 306
            D    +  L  KE                                              
Sbjct: 81  RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY-----------------EDRYT 123

Query: 307 LATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK-YLVSCGDDKTLRVWDTAN 365
           +A         + D  +      +      V   T+HP  +   +    +    + +   
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

Query: 366 KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVW 403
              +  +        ++    A P++  G  D + + +
Sbjct: 184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYF 221

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.2 bits (129), Expect = 1e-08
 Identities = 16/181 (8%), Positives = 38/181 (20%), Gaps = 26/181 (14%)

Query: 230 GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASE 289
             R   +   +        +  +     +    +K+    +      V     +      
Sbjct: 18  EDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA----- 71

Query: 290 SISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL-----IGHDNWVRGVTFHP 344
                         G YL    RD  I + D+ +            I   +         
Sbjct: 72  -------------SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY 118

Query: 345 GGKYL-VSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFH-RAHPYVVTGSVDKTVKV 402
             +Y            + D       + +      V +  +H       +  S +    +
Sbjct: 119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 178

Query: 403 W 403
            
Sbjct: 179 V 179

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 36/275 (13%), Positives = 69/275 (25%), Gaps = 45/275 (16%)

Query: 101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY-ERALHGHLDSVQDIAFDQS 159
                      +  H     + +  E   + L +Y+  +       G    + D  +D S
Sbjct: 158 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSS 217

Query: 160 GKL-LVSCSADMSLKLWDMSTYQCLKTMQGHDHN---------------VTGVAFLPNSD 203
            +  + + +    + + D    +    +                     V   + L +  
Sbjct: 218 HRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGS 277

Query: 204 FVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG-------TLLASCSNDHTA 256
             L  +  K    +       V  L G       IK  P         T         + 
Sbjct: 278 ISLIGTDPKNHPQY---AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV 334

Query: 257 RVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR---- 312
            V+ L   + K ++       +    A  V     ++        G   + +  +     
Sbjct: 335 AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR-------GDEVWFSVWNGKNDS 387

Query: 313 -------DKTIKLWDVGSGSLLFTLIGHDNWVRGV 340
                  DKT+KL  V     L T  G  N     
Sbjct: 388 SALVVVDDKTLKLKAVVKDPRLITPTGKFNVYNTQ 422

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 63.7 bits (153), Expect = 7e-12
 Identities = 32/296 (10%), Positives = 65/296 (21%), Gaps = 56/296 (18%)

Query: 123 SCSEDATIRLWDY-ETGEYE-RALHGHLDSVQDIAFDQSGKLL-VSCSADMSLKLWDMST 179
           +  E   I +W+    G      +      VQ +      + L V    +  +  + ++ 
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 180 YQCLKTMQGHDH---NVTGVAFLPNSDFVLSASRDKTIKM---WEVATGYCVKTLTGHRE 233
                T         ++T ++      FV   S +         E      V  +    +
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD 128

Query: 234 WVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISE 293
                 +SPD   L   +           + +     +            P       +E
Sbjct: 129 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 188

Query: 294 AAGRPPGQGGG-------------------------------------------PYLATG 310
                  +                                                 A  
Sbjct: 189 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD 248

Query: 311 SRDKTIKLWDVGSGSLLFTLIGHD---NWVRGVTFHPGGKYL-VSCGDDKTLRVWD 362
                I ++ V     + +  G        RG      GKYL  +      + V++
Sbjct: 249 RTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (125), Expect = 2e-08
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 309 TGSRDKTIKLWDV-GSGSL-LFTLIGHDNWVRGVTFHPGGKYL-VSCGDDKTLRVWDTAN 365
                + I +W++   G+L L  ++     V+ +   P  +YL V    +  +  +  A 
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 366 KRNMKTLEAHSHFVTS 381
                T  A S    S
Sbjct: 69  DDGALTFAAESALPGS 84

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 27/219 (12%), Positives = 57/219 (26%), Gaps = 27/219 (12%)

Query: 150 SVQDIAFDQSGKLL-VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSA 208
           ++ +   D +GK    +C           +       +   +      A +   +F    
Sbjct: 177 NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV-ERIAAAVKAGNFKTIG 235

Query: 209 SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG-TLLASCSNDHTARVWSLATKETK 267
              K   +         + +   +     +  SPDG   +A+     T  V ++      
Sbjct: 236 D-SKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDK--LD 291

Query: 268 AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLL 327
                     + +     VA   +          G G    T   D  +  W++      
Sbjct: 292 DLFEDKIELRDTI-----VAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKH 346

Query: 328 F---------------TLIGHDNWVRGVTFHPGGKYLVS 351
           +                  GH++     +    GK+LV 
Sbjct: 347 YNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV 385

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 24/226 (10%), Positives = 55/226 (24%), Gaps = 20/226 (8%)

Query: 189 HDHNVTGVAFLPNSDFVLSASR-DKTIKMWEVATGYCVKTLT-GHREWVRQIKVSPDG-T 245
           H H ++      +  ++    + +  +    +      K     + + +  +++     T
Sbjct: 71  HPH-ISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT 129

Query: 246 LLASCSNDHTARV----WSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQ 301
               C+ +            +   +       D     VAW   V         G     
Sbjct: 130 NYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD--------GNLDNT 181

Query: 302 GGGP---YLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTL 358
                  Y  +   +    +   G+       +   N  R       G +    GD K  
Sbjct: 182 DADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKT-IGDSKVP 240

Query: 359 RVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE 404
            V         + +    +            ++  G +  TV V  
Sbjct: 241 VVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIA 286

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 31/253 (12%), Positives = 62/253 (24%), Gaps = 18/253 (7%)

Query: 151 VQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR 210
           ++++A    G + V+      +           +     +  V+G+AF  N D V +   
Sbjct: 30  LENLASAPDGTIFVTNHEVGEIVSITPDG--NQQIHATVEGKVSGLAFTSNGDLVATGWN 87

Query: 211 DKTIKMWEVA---TGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETK 267
             +I +  +                 ++  I    D   L + S      +  +      
Sbjct: 88  ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 147

Query: 268 AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLL 327
             L                       A G            T          D       
Sbjct: 148 IWLEHPMLARSNSESV-------FPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGE 200

Query: 328 FTLIGHDNWVRGVTFHP-GGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHR 386
             +      +    F   G  Y  +   +  +R+    +   +   E      T++ F +
Sbjct: 201 PEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQ 260

Query: 387 AHP-----YVVTG 394
                   YVVT 
Sbjct: 261 TEGDCTAIYVVTN 273

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 3/84 (3%)

Query: 320 DVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFV 379
           ++    ++ +    + ++  +   P G   V+  +   +        +  +        V
Sbjct: 14  ELAPAKIITSF-PVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVEGKV 70

Query: 380 TSLDFHRAHPYVVTGSVDKTVKVW 403
           + L F      V TG    ++ V 
Sbjct: 71  SGLAFTSNGDLVATGWNADSIPVV 94

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 31/289 (10%), Positives = 73/289 (25%), Gaps = 24/289 (8%)

Query: 99  KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQ 158
           +++     S          +    + +      + + ++            +        
Sbjct: 199 EYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIG 258

Query: 159 SGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE 218
              L      D++    +  + Q L+ +Q +             D+  S+ R   +   +
Sbjct: 259 DHYL-----CDVTWATQERISLQWLRRIQNYSVMDI-------CDYDESSGRWNCLVARQ 306

Query: 219 VATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVE 278
                    +   R       +  +       + +    +      +             
Sbjct: 307 HIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTW-- 364

Query: 279 CVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLL-FTLIGHDNWV 337
            V     + S+ +   +    G  GG  L        I+L D    + L   L       
Sbjct: 365 EVIGIEALTSDYLYYISNEYKGMPGGRNLYK------IQLSDYTKVTCLSCELNPERCQY 418

Query: 338 RGVTFHPGGKYLV-SCGDDKT--LRVWDTANKRNMKTLEAHSHFVTSLD 383
             V+F    KY    C         +  + N + ++ LE +S     L 
Sbjct: 419 YSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSALDKMLQ 467

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 36/294 (12%), Positives = 75/294 (25%), Gaps = 30/294 (10%)

Query: 126 EDATIRLWDYETGEYERALHGH-----LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY 180
           ++  I +++ E G     L          S+ D +    G+ ++       +K W  S  
Sbjct: 34  QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFIL--LEYNYVKQWRHSYT 91

Query: 181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKV 240
                   +   +     +PN+   ++ S       +       VK       +      
Sbjct: 92  ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTG 151

Query: 241 SPD--------GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVA-WAPGVASESI 291
             D                + ++A  WS       A  + +D  V  +        S   
Sbjct: 152 KEDIIYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDESLQY 210

Query: 292 SEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVS 351
            +    P      P     +      + +  S S +             +   G  YL  
Sbjct: 211 PKTVRVPY-----PKAGAVNPTVKFFVVNTDSLSSVTNATSIQ-ITAPASMLIGDHYLCD 264

Query: 352 CG--DDKTLRVWDTANKRNMKTL-----EAHSHFVTSLDFHRAHPYVVTGSVDK 398
                 + + +      +N   +     +  S     L   +      TG V +
Sbjct: 265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR 318

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 30/260 (11%), Positives = 70/260 (26%), Gaps = 12/260 (4%)

Query: 146 GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFV 205
           G       +A +    ++V+ + +  ++++D       K   G           PN   V
Sbjct: 20  GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAV 77

Query: 206 LSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKE 265
           +  S D  +          +    G         +      +   +      V     + 
Sbjct: 78  VRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRV 137

Query: 266 TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGS 325
              +  G+       +      +       G         +++             G   
Sbjct: 138 IIFDQNGNVLHKFGCSKHLEFPN-------GVVVNDKQEIFISDNRAHCVKVFNYEGQYL 190

Query: 326 LLFTLIGHDNWVRGVTFHPGGKYLVS-CGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF 384
                 G  N+  GV  +  G+ L++   ++  L ++    +  +  LE+        D 
Sbjct: 191 RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LISALESKVKHAQCFDV 249

Query: 385 HRAH-PYVVTGSVDKTVKVW 403
                  VV  S D  + ++
Sbjct: 250 ALMDDGSVVLASKDYRLYIY 269

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 11/128 (8%), Positives = 32/128 (25%)

Query: 133 WDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHN 192
               +          L+    +A D SG + V+ + +  +   +  +   +         
Sbjct: 124 LAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITA 183

Query: 193 VTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN 252
             G+A        ++      +      +                + V  D T+  +   
Sbjct: 184 PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 243

Query: 253 DHTARVWS 260
           +      +
Sbjct: 244 NDRVVKLT 251

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	406
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.9
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.88
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.68
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.66
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.64
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.55
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.47
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.37
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.33
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.27
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.27
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.26
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.25
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.25
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.23
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.22
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.15
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.12
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.08
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.96
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.79
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.68
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.64
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.63
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.54
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.33
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.13
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.95
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.65
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.64
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.57
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.51
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.51
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.51
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.36
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.34
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.28
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.19
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.12
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.1
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.99
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.87
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.77
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.55
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.18
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.15
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.05
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.34
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.95
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.94
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.44
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	94.39
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.67
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	92.12
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	89.81
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.14
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	88.28
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	83.75

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-53  Score=384.16  Aligned_cols=315  Identities=70%  Similarity=1.236  Sum_probs=292.3

Q ss_pred             CcCCCCCCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC
Q psy226           90 TEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD  169 (406)
Q Consensus        90 ~~~~~~~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d  169 (406)
                      ..|.|+.|+++.|.||.++|++++|+|++++||||+.||+|+|||+.+++....+.+|...|.+++|+|++.++++++.+
T Consensus         1 k~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1           1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             CCCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CccCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccc
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEE
Q psy226          170 MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLAS  249 (406)
Q Consensus       170 ~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s  249 (406)
                      +.+.+|+....+....+.+|...+.++.|+|+++.+++++.|+.+++||++++..+..+.+|...+.+++++|++.+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  160 (317)
T d1vyhc1          81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS  160 (317)
T ss_dssp             SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEE
Confidence            99999999988888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCC--CCCCCCCEEEEEeCCCcEEEEECCCCeEE
Q psy226          250 CSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP--PGQGGGPYLATGSRDKTIKLWDVGSGSLL  327 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~d~~i~lwd~~~~~~~  327 (406)
                      ++.|+.|++|++.+......+.+|...+.++.|.|..............  .....+.++++++.|+.|++||+++++++
T Consensus       161 ~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  240 (317)
T d1vyhc1         161 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL  240 (317)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred             EeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE
Confidence            9999999999999999999999999999999999975543332221111  12235678999999999999999999999


Q ss_pred             EEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          328 FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       328 ~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      ..+.+|...|.+++|+|++++|++|+.||.|+|||+.+++.+.++.+|...|++++|+|++++|+||+.||+|+|||
T Consensus       241 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-48  Score=354.05  Aligned_cols=284  Identities=22%  Similarity=0.357  Sum_probs=256.5

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE-----EEEecccccCeeeEEECCCCCEEEEEeCCCcEEE
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY-----ERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKL  174 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~-----~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~v  174 (406)
                      ...-+|..+|+|++|+|++++||||+ ||.|+|||+.++..     .....+|.+.|.+++|+|+|++|++|+.|++|++
T Consensus        45 ~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             EEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence            33448999999999999999999998 89999999876532     2334579999999999999999999999999999


Q ss_pred             EeCCC--CeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC
Q psy226          175 WDMST--YQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN  252 (406)
Q Consensus       175 wd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~  252 (406)
                      ||+..  .+....+.+|...+.+++|+|++.++++++.|+.|++||+.++.+.....+|...|.+++|++++..+++|+.
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~  203 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99874  4566778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy226          253 DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       253 d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~  332 (406)
                      |+.+++||+++++.+..+ .|...|.+++|+|                  ++.++++|+.|+.|++||++++... ....
T Consensus       204 d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~------------------~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~  263 (337)
T d1gxra_         204 DNTVRSWDLREGRQLQQH-DFTSQIFSLGYCP------------------TGEWLAVGMESSNVEVLHVNKPDKY-QLHL  263 (337)
T ss_dssp             TSEEEEEETTTTEEEEEE-ECSSCEEEEEECT------------------TSSEEEEEETTSCEEEEETTSSCEE-EECC
T ss_pred             cccccccccccceeeccc-ccccceEEEEEcc------------------cccccceeccccccccccccccccc-cccc
Confidence            999999999988766554 5788999999988                  4678999999999999999988765 5678


Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       333 h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |...|++++|+|+|++|++|+.||.|++||+.+++.+..+. |...|++++|+|++++|++|+.||+|+|||+
T Consensus       264 ~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999999999999999999999999999998887765 6788999999999999999999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-46  Score=342.93  Aligned_cols=328  Identities=24%  Similarity=0.412  Sum_probs=278.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCC--CCCCCCCcCCCCCCceEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q psy226           57 IRLQKKVIELESKLSEAEKEYVEGAPT--RAKRSPTEWIPRAPEKFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWD  134 (406)
Q Consensus        57 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd  134 (406)
                      -.|+++...|+.++.+.++......-.  .....+... .....+.+|.||.++|++++|+|++++||||+.||+|+|||
T Consensus         5 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd   83 (340)
T d1tbga_           5 DQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGR-IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD   83 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHTTTSCCCCC-CCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchHHHHhhccCcccc-cceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeee
Confidence            346666666766666555432211100  001111111 11234567999999999999999999999999999999999


Q ss_pred             cCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC----CeEEEEEecCCcceEEEEEecCCCEEEEEeC
Q psy226          135 YETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST----YQCLKTMQGHDHNVTGVAFLPNSDFVLSASR  210 (406)
Q Consensus       135 ~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~  210 (406)
                      +.+++....+.+|...|.+++|+|++.++++|+.|+.+++|+...    ......+.+|.......... .+..+..+..
T Consensus        84 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  162 (340)
T d1tbga_          84 SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSG  162 (340)
T ss_dssp             TTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEET
T ss_pred             cccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccc-cccccccccc
Confidence            999999999999999999999999999999999999999999764    34556777887766665554 4567888889


Q ss_pred             CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccc
Q psy226          211 DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASES  290 (406)
Q Consensus       211 d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  290 (406)
                      |.....++............+...+....+.+.+.++++|+.|+.|++||+++......+.+|...|.+++|+|      
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p------  236 (340)
T d1tbga_         163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP------  236 (340)
T ss_dssp             TTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT------
T ss_pred             cccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC------
Confidence            99999999988888888888889999999999999999999999999999999999999999999999999998      


Q ss_pred             cccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe--CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q psy226          291 ISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI--GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN  368 (406)
Q Consensus       291 ~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~--~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~  368 (406)
                                  ++.+|++|+.|+.|++||++....+..+.  .|...|.+++|+|++++|++|+.||.|++||+.+++.
T Consensus       237 ------------~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~  304 (340)
T d1tbga_         237 ------------NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             ------------TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred             ------------CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcE
Confidence                        47799999999999999999988877654  4667899999999999999999999999999999999


Q ss_pred             ceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          369 MKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       369 ~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      +.++.+|...|++|+|+|++++|+|||.||+|+|||
T Consensus       305 ~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-46  Score=351.28  Aligned_cols=285  Identities=25%  Similarity=0.469  Sum_probs=252.2

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec------------------ccccCeeeEEECCCCCEEE
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH------------------GHLDSVQDIAFDQSGKLLV  164 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~------------------~h~~~V~~l~~~~~g~~l~  164 (406)
                      .+|.++|+||+|+|+|++||+|+ |++|+|||+.+++....+.                  +|...|++++|+|+|++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            47999999999999999999987 8999999999988766553                  4556799999999999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCC
Q psy226          165 SCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG  244 (406)
Q Consensus       165 sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~  244 (406)
                      +|+.||+|++||..+++.+..+.+|...|.++.+++++..+++++.++.+++||..+.........+...+....+.+++
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  217 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999998888777666655555555689


Q ss_pred             CEEEEEeCCCeEEEEeCCCccceeEE-------ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEE
Q psy226          245 TLLASCSNDHTARVWSLATKETKAEL-------RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIK  317 (406)
Q Consensus       245 ~~l~s~~~d~~v~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  317 (406)
                      .+|++|+.|+.|++||..+......+       .+|...|.++.|+|                  ++.+|++|+.|+.|+
T Consensus       218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~------------------~~~~l~s~~~d~~i~  279 (388)
T d1erja_         218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR------------------DGQSVVSGSLDRSVK  279 (388)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT------------------TSSEEEEEETTSEEE
T ss_pred             CeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC------------------CCCEEEEEECCCcEE
Confidence            99999999999999999887665443       46888999999998                  467899999999999


Q ss_pred             EEECCCCe------------EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEE-
Q psy226          318 LWDVGSGS------------LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDF-  384 (406)
Q Consensus       318 lwd~~~~~------------~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~-  384 (406)
                      +||++++.            +......|...|.+++|+|+|++|++|+.||.|++||+.+++++.++.+|.+.|+++++ 
T Consensus       280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~  359 (388)
T d1erja_         280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA  359 (388)
T ss_dssp             EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEe
Confidence            99987543            34556778999999999999999999999999999999999999999999999999974 


Q ss_pred             -----eCCCCEEEEeeCCCeEEEeecC
Q psy226          385 -----HRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       385 -----~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                           +|++.+|||||.||+|+||+++
T Consensus       360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         360 NGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence                 6789999999999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.3e-46  Score=339.02  Aligned_cols=280  Identities=18%  Similarity=0.255  Sum_probs=250.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE--
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC--  182 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~--  182 (406)
                      +.+.+.+++++|+++.||.++ ++.|.+||+.++.....+.+|.+.|++++|+|+|++|++|+.||+|++||+.+.+.  
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence            445566889999999999985 66799999999998889999999999999999999999999999999999987653  


Q ss_pred             EEEEecCCcceEEEEEecCCCEEEEEeC--CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCE-EEEEeCCCeEEEE
Q psy226          183 LKTMQGHDHNVTGVAFLPNSDFVLSASR--DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL-LASCSNDHTARVW  259 (406)
Q Consensus       183 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~~~d~~v~vw  259 (406)
                      ...+.+|..+|.+++|+|+++++++++.  +..+++|++.++.....+.+|...|.+++|+|++.+ |++|+.|+.|++|
T Consensus        95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~  174 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF  174 (311)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccc
Confidence            3567889999999999999999999876  466999999999999999999999999999999875 8899999999999


Q ss_pred             eCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-------C
Q psy226          260 SLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI-------G  332 (406)
Q Consensus       260 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~-------~  332 (406)
                      |+++.+....+..|..+|.++.|+|                  ++.++++++.|+.|++||+.++..+..+.       +
T Consensus       175 d~~~~~~~~~~~~~~~~i~~v~~~p------------------~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~  236 (311)
T d1nr0a1         175 EGPPFKFKSTFGEHTKFVHSVRYNP------------------DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA  236 (311)
T ss_dssp             ETTTBEEEEEECCCSSCEEEEEECT------------------TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS
T ss_pred             cccccccccccccccccccccccCc------------------ccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999998                  47789999999999999999988877653       5


Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccc---eEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSH---FVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       333 h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~---~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      |...|++++|+|+|++|++|+.||+|+|||+.++++++++..|..   .+.++.|  ++.+|++++.||.|++||.
T Consensus       237 h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNP  310 (311)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEET
T ss_pred             ccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeC
Confidence            888999999999999999999999999999999999998876643   3445555  5567999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-44  Score=336.04  Aligned_cols=282  Identities=17%  Similarity=0.203  Sum_probs=237.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc--EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGE--YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC  182 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~--~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~  182 (406)
                      +..||+|++|+|++++||+|+.||.|+|||..+++  ....+++|.++|++|+|+|++++|++|+.|++|++||+.++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            45799999999999999999999999999998876  4566889999999999999999999999999999999987654


Q ss_pred             --EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeE----EEEeecCCccEEEEEECCCCCEEEEEeCCCeE
Q psy226          183 --LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYC----VKTLTGHREWVRQIKVSPDGTLLASCSNDHTA  256 (406)
Q Consensus       183 --~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v  256 (406)
                        ...+.+|...|.+++|+|+++.|++|+.|++|++|++.....    .....+|...|.+++|+|++++|++|+.|+++
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence              344567889999999999999999999999999999876532    34456788999999999999999999999999


Q ss_pred             EEEeCCCcc------------------ceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEE
Q psy226          257 RVWSLATKE------------------TKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL  318 (406)
Q Consensus       257 ~vwd~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~l  318 (406)
                      ++||+....                  .......|...|.+++|+|                  ++.++++++.|+.|++
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------------------~g~~l~s~~~d~~i~i  227 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA------------------NGSRVAWVSHDSTVCL  227 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS------------------SSSEEEEEETTTEEEE
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec------------------ccccccccccCCcceE
Confidence            999975432                  2344567888899999998                  4678999999999999


Q ss_pred             EECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Cccc---------------------------
Q psy226          319 WDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN--KRNM---------------------------  369 (406)
Q Consensus       319 wd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~--~~~~---------------------------  369 (406)
                      ||+.+++.+..+.+|..+|.+++|+|++++|++|+ |+.+++|+...  ....                           
T Consensus       228 wd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (371)
T d1k8kc_         228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK  306 (371)
T ss_dssp             EEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred             EeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccc
Confidence            99999999999999999999999999998888765 66666654321  1100                           


Q ss_pred             ------------eeeccccceEEEEEEeCCC----CEEEEeeCCCeEEEeec
Q psy226          370 ------------KTLEAHSHFVTSLDFHRAH----PYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       370 ------------~~l~~h~~~v~~l~~~~~~----~~l~sgs~Dg~v~iw~~  405 (406)
                                  .....|.+.|+++++.+.+    ..++|+|.||.|++||+
T Consensus       307 ~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         307 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             CC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             eeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence                        0001388889999998755    36899999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-42  Score=310.76  Aligned_cols=283  Identities=18%  Similarity=0.242  Sum_probs=231.4

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      ...+.||.++|++++|+|++++||||+.||+|++||+.+++..+.+. +|...|++++|+|+|.+ ++++.|+.+++|+.
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEecc
Confidence            45789999999999999999999999999999999999999888774 78999999999999875 56678999999997


Q ss_pred             CCCeE---EEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC
Q psy226          178 STYQC---LKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       178 ~~~~~---~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      .....   ......+...+.+++|+|++.++++++ ++.+++|+...  .....  ....+.+++|+|+++++++|+.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg  158 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQDS  158 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEETTS
T ss_pred             CCccccccccccccccccccccccccccccccccc-ccccccccccc--ccccc--cccccccccccccccccccccccc
Confidence            64321   122345677899999999998776654 56899998543  23332  334578899999999999999999


Q ss_pred             eEEEEeCCCcccee-EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE---EE
Q psy226          255 TARVWSLATKETKA-ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF---TL  330 (406)
Q Consensus       255 ~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~---~~  330 (406)
                      .+++||+.+..... ....|...|.+++|+|                  ++.++++++.|+.|++||+.++....   .+
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~  220 (299)
T d1nr0a2         159 KVHVYKLSGASVSEVKTIVHPAEITSVAFSN------------------NGAFLVATDQSRKVIPYSVANNFELAHTNSW  220 (299)
T ss_dssp             EEEEEEEETTEEEEEEEEECSSCEEEEEECT------------------TSSEEEEEETTSCEEEEEGGGTTEESCCCCC
T ss_pred             ccccccccccccccccccccccccccccccc------------------ccccccccccccccccccccccccccccccc
Confidence            99999998765443 4557889999999988                  46789999999999999998876553   45


Q ss_pred             eCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee--cc-ccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          331 IGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL--EA-HSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       331 ~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l--~~-h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      .+|...|++++|+|++++|++|+.||.|++||+.++.....+  .. +...|.++.| +++.+|+|||.||+|++||+.
T Consensus       221 ~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         221 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             cccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            678999999999999999999999999999999876543332  33 3445777765 556799999999999999973

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2e-41  Score=307.24  Aligned_cols=246  Identities=22%  Similarity=0.328  Sum_probs=219.2

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE--EEEecccccCeeeEEECCCCCEEEEEeC--CCcEEE
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY--ERALHGHLDSVQDIAFDQSGKLLVSCSA--DMSLKL  174 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~--~~~~~~h~~~V~~l~~~~~g~~l~sgs~--d~~i~v  174 (406)
                      ...+.+|.++|++++|+|++++||+|+.||+|+|||+.++..  ...+.+|..+|.+++|+|++++|++++.  +..+++
T Consensus        51 ~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v  130 (311)
T d1nr0a1          51 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  130 (311)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             eEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccc
Confidence            345789999999999999999999999999999999988753  4567889999999999999999999986  456999


Q ss_pred             EeCCCCeEEEEEecCCcceEEEEEecCCCE-EEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCC
Q psy226          175 WDMSTYQCLKTMQGHDHNVTGVAFLPNSDF-VLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSND  253 (406)
Q Consensus       175 wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d  253 (406)
                      |++.+++....+.+|...|.+++|+|++++ +++|+.|++|++||++++.....+.+|...|.++.++|+++++++++.|
T Consensus       131 ~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d  210 (311)
T d1nr0a1         131 FLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD  210 (311)
T ss_dssp             EETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccc
Confidence            999999888899999999999999999885 7889999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCccceeEE-------ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE
Q psy226          254 HTARVWSLATKETKAEL-------RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL  326 (406)
Q Consensus       254 ~~v~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~  326 (406)
                      +.+++||+.+......+       .+|...|.+++|+|                  ++.+|++|+.||.|+|||++++++
T Consensus       211 ~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~------------------~~~~l~tgs~Dg~v~iwd~~t~~~  272 (311)
T d1nr0a1         211 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP------------------DGTKIASASADKTIKIWNVATLKV  272 (311)
T ss_dssp             SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT------------------TSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccccCC------------------CCCEEEEEeCCCeEEEEECCCCcE
Confidence            99999999887665544       36888999999998                  477999999999999999999999


Q ss_pred             EEEEeCCCc---CEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          327 LFTLIGHDN---WVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       327 ~~~~~~h~~---~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      +.++..|..   .+.++.|  ++.+|++++.||.|++||.+
T Consensus       273 ~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         273 EKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             EEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            999887643   3444554  56689999999999999964

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-40  Score=299.94  Aligned_cols=281  Identities=28%  Similarity=0.482  Sum_probs=236.0

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ...|+||.++|.+ ++++++++|||||.||+|+|||+.+++....+.+|...|.+++|+++  +|++|+.|+++++|+..
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~   85 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE   85 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETT
T ss_pred             CEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccc
Confidence            3568999999865 46778999999999999999999999999999999999999999874  99999999999999987


Q ss_pred             CCeEEEEEecCCcce--------------------------------------EEEEEecCCCEEEEEeCCCcEEEEEcC
Q psy226          179 TYQCLKTMQGHDHNV--------------------------------------TGVAFLPNSDFVLSASRDKTIKMWEVA  220 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v--------------------------------------~~~~~~p~~~~l~s~s~d~~i~iwd~~  220 (406)
                      ..........+...+                                      ....+.+....+++++.|+.|++||..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~  165 (342)
T d2ovrb2          86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE  165 (342)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred             cccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecc
Confidence            654332222111111                                      112233455678889999999999999


Q ss_pred             CCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCC
Q psy226          221 TGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPG  300 (406)
Q Consensus       221 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  300 (406)
                      ...++..+.+|...+..+.+  ++.++++|+.||.|++||++..+.+..+.+|...+.++.+.+                
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~----------------  227 (342)
T d2ovrb2         166 TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD----------------  227 (342)
T ss_dssp             GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET----------------
T ss_pred             cceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC----------------
Confidence            99999999999887766554  688999999999999999999999999999999999888764                


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC---CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec----
Q psy226          301 QGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG---HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE----  373 (406)
Q Consensus       301 ~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~---h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~----  373 (406)
                          .+|++|+.|+.|++||+...+....+.+   |...+.++.++  ++++++|+.||+|+|||+.+++.++++.    
T Consensus       228 ----~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~  301 (342)
T d2ovrb2         228 ----NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES  301 (342)
T ss_dssp             ----TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred             ----CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccC
Confidence                4899999999999999999888877765   55667777765  5699999999999999999999887763    


Q ss_pred             -cccceEEEEEEeCCCCEEEEeeCCCe----EEEeecC
Q psy226          374 -AHSHFVTSLDFHRAHPYVVTGSVDKT----VKVWECR  406 (406)
Q Consensus       374 -~h~~~v~~l~~~~~~~~l~sgs~Dg~----v~iw~~~  406 (406)
                       +|...|++++|+|++.+||+|+.||+    |++||+.
T Consensus       302 ~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         302 GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence             57788999999999999999999985    9999973

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-40  Score=304.79  Aligned_cols=281  Identities=23%  Similarity=0.406  Sum_probs=224.9

Q ss_pred             CceEEeccCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEE
Q psy226           97 PEKFALSGHRSPV-IKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLW  175 (406)
Q Consensus        97 ~~~~~l~~h~~~V-~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vw  175 (406)
                      |++.+|+||.+.| +|+.|  ++++||||+.||+|+|||+.+++....+.+|.++|++++|+|+ .+|++|+.|++|++|
T Consensus         3 p~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw   79 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVW   79 (355)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred             CCcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccc
Confidence            6678999999886 56555  5789999999999999999999999999999999999999985 589999999999999


Q ss_pred             eCCCCeEEEEEecCCc--ceEEEEEecCCCEEEEEeCCCcEEEEEc----------------------------------
Q psy226          176 DMSTYQCLKTMQGHDH--NVTGVAFLPNSDFVLSASRDKTIKMWEV----------------------------------  219 (406)
Q Consensus       176 d~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~d~~i~iwd~----------------------------------  219 (406)
                      ++...++......+..  ......+.+++.++++++.|++|++||+                                  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            9987765544433222  2233444455555555555555555554                                  


Q ss_pred             -----------------------------CCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEE
Q psy226          220 -----------------------------ATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAEL  270 (406)
Q Consensus       220 -----------------------------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~  270 (406)
                                                   .++..+....++...+.++.++|++.++++++.|+.|++||+.++.....+
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence                                         444444455566777888999999999999999999999999999999999


Q ss_pred             ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEE-EEcCCCCEE
Q psy226          271 RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGV-TFHPGGKYL  349 (406)
Q Consensus       271 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l-~~s~~g~~l  349 (406)
                      .+|...|.++.+++                    .++++|+.||.|++||+.++.....  .|...+.++ .+++++++|
T Consensus       240 ~~h~~~v~~~~~~~--------------------~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~l  297 (355)
T d1nexb2         240 QGHTALVGLLRLSD--------------------KFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNIL  297 (355)
T ss_dssp             CCCSSCCCEEEECS--------------------SEEEEECTTSEEEEEETTTCCEEEE--EECTTCCCCCEEEECSSEE
T ss_pred             cccccccccccccc--------------------ceeeeeecccccccccccccceecc--cccCCceEEEEEcCCCCEE
Confidence            99999999998864                    4799999999999999998876544  344445544 567788877


Q ss_pred             EEEeCCCeEEEEeCCCCccce-eeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          350 VSCGDDKTLRVWDTANKRNMK-TLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       350 ~sgs~d~~i~vwd~~~~~~~~-~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      ++|+ |+.|+|||+++++.+. .+.+|...|.+++|+|+ .++++++.||+++||.
T Consensus       298 ~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         298 VSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             EEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             EEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            7665 8899999999999875 46789999999999987 5788999999976664

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-39  Score=293.81  Aligned_cols=242  Identities=17%  Similarity=0.334  Sum_probs=223.0

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC--cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETG--EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~--~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ...+|.++|.+++|+|++++|++|+.||+|++||+...  +....+.+|...|.+++|+|++.++++++.|+.|++||+.
T Consensus        92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~  171 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH  171 (337)
T ss_dssp             ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45689999999999999999999999999999998754  5567788899999999999999999999999999999999


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV  258 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~v  258 (406)
                      ++++.....+|...|.+++|+|++..+++|+.|+.|++||++++..+..+ .|...|.+++|+|+++++++|+.|+.+++
T Consensus       172 ~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i  250 (337)
T d1gxra_         172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEV  250 (337)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceecccccccc
Confidence            99999999999999999999999999999999999999999999887766 47889999999999999999999999999


Q ss_pred             EeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEE
Q psy226          259 WSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVR  338 (406)
Q Consensus       259 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~  338 (406)
                      ||+.+.... ....|...|.+++|+|                  ++.+|++|+.|+.|++||+.+++.+..+. |...|.
T Consensus       251 ~d~~~~~~~-~~~~~~~~i~~v~~s~------------------~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~  310 (337)
T d1gxra_         251 LHVNKPDKY-QLHLHESCVLSLKFAY------------------CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVL  310 (337)
T ss_dssp             EETTSSCEE-EECCCSSCEEEEEECT------------------TSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEE
T ss_pred             ccccccccc-cccccccccceEEECC------------------CCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEE
Confidence            999877654 5678999999999998                  47799999999999999999999887765 778899


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEeC
Q psy226          339 GVTFHPGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       339 ~l~~s~~g~~l~sgs~d~~i~vwd~  363 (406)
                      +++|+|++++|++|+.||+|+|||+
T Consensus       311 ~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         311 SCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-39  Score=288.82  Aligned_cols=249  Identities=29%  Similarity=0.543  Sum_probs=236.2

Q ss_pred             EEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEc
Q psy226          140 YERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEV  219 (406)
Q Consensus       140 ~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~  219 (406)
                      ....|+||.++|++|+|+|++++|+||+.||+|+|||+.+++++.++.+|...|.+++|+|++.++++++.++.+.+|+.
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCC
Q psy226          220 ATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPP  299 (406)
Q Consensus       220 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  299 (406)
                      ........+.+|...+.++.++|++..+++++.|+.+++||++++.....+.+|...+.++.|.|               
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  153 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ---------------  153 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT---------------
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeeccc---------------
Confidence            99988888899999999999999999999999999999999999999999999999999999987               


Q ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCC--------------------CEEEEEeCCCeEE
Q psy226          300 GQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGG--------------------KYLVSCGDDKTLR  359 (406)
Q Consensus       300 ~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g--------------------~~l~sgs~d~~i~  359 (406)
                         ++.++++++.|+.|++|++.++.....+.+|...+.+++|+|++                    .++++|+.|+.|+
T Consensus       154 ---~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  230 (317)
T d1vyhc1         154 ---DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  230 (317)
T ss_dssp             ---TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             ---CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEE
Confidence               46789999999999999999999999999999999999998863                    4789999999999


Q ss_pred             EEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          360 VWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       360 vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +||..+++.+.++.+|...|.+++|+|++++|++|+.||.|++||++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  277 (317)
T d1vyhc1         231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK  277 (317)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             EEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            99999999999999999999999999999999999999999999964

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-39  Score=293.39  Aligned_cols=280  Identities=15%  Similarity=0.227  Sum_probs=230.2

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC-cEEEEEcCCCc--EEEEeccc-ccCeeeEEECC--CCCEEEEEeCCCcEEEEeCCCCe
Q psy226          108 PVIKVIFHPVFSLMASCSEDA-TIRLWDYETGE--YERALHGH-LDSVQDIAFDQ--SGKLLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg-~v~vwd~~~~~--~~~~~~~h-~~~V~~l~~~~--~g~~l~sgs~d~~i~vwd~~~~~  181 (406)
                      .+++++|+|+++.||.++.+. .|+.||.....  ....+.+| ...|++++|+|  +|.+|++|+.||+|++||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            457889999999999887554 35677755433  35567777 46899999997  56899999999999999986432


Q ss_pred             --------EEEEEecCCcceEEEEEecCCCEEEEEeC--CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCE-EEEE
Q psy226          182 --------CLKTMQGHDHNVTGVAFLPNSDFVLSASR--DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTL-LASC  250 (406)
Q Consensus       182 --------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~  250 (406)
                              ....+..|..+|.+++|+|++.++++++.  ++.+++|+..++.++..+.+|...|.+++|+|++.+ ++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  178 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV  178 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence                    12345678899999999999999887654  678999999999999999999999999999999875 6789


Q ss_pred             eCCCeEEEEeCCCccceeEE---ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEE
Q psy226          251 SNDHTARVWSLATKETKAEL---RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLL  327 (406)
Q Consensus       251 ~~d~~v~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~  327 (406)
                      +.|+.+++||+...+.....   ..|...|.+++|+|+                 .+.++++++.|+.|++||+++++.+
T Consensus       179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd-----------------~~~~l~s~~~d~~i~iwd~~~~~~~  241 (325)
T d1pgua1         179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD-----------------SGEFVITVGSDRKISCFDGKSGEFL  241 (325)
T ss_dssp             ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST-----------------TCCEEEEEETTCCEEEEETTTCCEE
T ss_pred             ecccccccccccccccceecccccCCCCccEEeeeccc-----------------cceeccccccccceeeeeecccccc
Confidence            99999999999876654444   356778999999984                 4678999999999999999999999


Q ss_pred             EEEeCCCcCEEEEEEc---CCCCEEEEEeCCCeEEEEeCCCCccceeeccccce--E--EEEEEeCCCCEEEEeeCCCeE
Q psy226          328 FTLIGHDNWVRGVTFH---PGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF--V--TSLDFHRAHPYVVTGSVDKTV  400 (406)
Q Consensus       328 ~~~~~h~~~v~~l~~s---~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~--v--~~l~~~~~~~~l~sgs~Dg~v  400 (406)
                      ..+.+|...+.++.|+   |+|++|++++.|+.|+|||+.+++.++++..|...  +  .++.|.++ .+|++||.||.|
T Consensus       242 ~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i  320 (325)
T d1pgua1         242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTL  320 (325)
T ss_dssp             EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCE
T ss_pred             ccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEE
Confidence            9999998877666665   78999999999999999999999998887665443  3  34444443 478999999999


Q ss_pred             EEeec
Q psy226          401 KVWEC  405 (406)
Q Consensus       401 ~iw~~  405 (406)
                      ++||+
T Consensus       321 ~vwdl  325 (325)
T d1pgua1         321 NFYEL  325 (325)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.3e-39  Score=297.54  Aligned_cols=239  Identities=18%  Similarity=0.331  Sum_probs=211.9

Q ss_pred             cccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeE
Q psy226          147 HLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ--CLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYC  224 (406)
Q Consensus       147 h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~  224 (406)
                      +.++|+|++|+|+|++|++|+.|+.|++||..+++  ++..+.+|..+|.+++|+|++++|++|+.|++|++||+.++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            35789999999999999999999999999997664  6778899999999999999999999999999999999987654


Q ss_pred             --EEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccce----eEEecCCceEEEEEeCCCCCccccccccCCC
Q psy226          225 --VKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETK----AELRGHDHTVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       225 --~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                        ...+.+|...|.+++|+|+++.|++|+.|+++++|++......    .....|...|.+++|+|              
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p--------------  151 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP--------------  151 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT--------------
T ss_pred             ccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc--------------
Confidence              4455688999999999999999999999999999998765543    33456888999999998              


Q ss_pred             CCCCCCCEEEEEeCCCcEEEEECCC------------------CeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEE
Q psy226          299 PGQGGGPYLATGSRDKTIKLWDVGS------------------GSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRV  360 (406)
Q Consensus       299 ~~~~~~~~l~s~~~d~~i~lwd~~~------------------~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~v  360 (406)
                          ++.+|++|+.|+.|++||...                  +..+....+|...|.+++|+|+|++|++++.|+.|++
T Consensus       152 ----~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~i  227 (371)
T d1k8kc_         152 ----NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL  227 (371)
T ss_dssp             ----TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             ----cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceE
Confidence                477899999999999999753                  3466777889999999999999999999999999999


Q ss_pred             EeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          361 WDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       361 wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      ||+.+++.+.++..|..+|.+++|+|++.+|++|+ |+.+++|.
T Consensus       228 wd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~  270 (371)
T d1k8kc_         228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFT  270 (371)
T ss_dssp             EEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEE
T ss_pred             EeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEE
Confidence            99999999999999999999999999998888765 77777765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-37  Score=289.34  Aligned_cols=267  Identities=26%  Similarity=0.483  Sum_probs=224.5

Q ss_pred             EEEEeCCCcEEEEEcCCCcE-E---EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe---------
Q psy226          121 MASCSEDATIRLWDYETGEY-E---RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ---------  187 (406)
Q Consensus       121 latgs~dg~v~vwd~~~~~~-~---~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~---------  187 (406)
                      ...+..++.+.+|+....+. .   ....+|++.|++|+|+|+|++|++|+ |++|+|||+.+++.+..+.         
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence            34567788889998665432 1   22236999999999999999999986 8999999999888776654         


Q ss_pred             ---------cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Q psy226          188 ---------GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV  258 (406)
Q Consensus       188 ---------~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~v  258 (406)
                               +|...|.+++|+|++++|++|+.|++|++||..++..+..+.+|...|.++.+++++..+++++.++.+++
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~  189 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI  189 (388)
T ss_dssp             ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeee
Confidence                     35567999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE-------e
Q psy226          259 WSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL-------I  331 (406)
Q Consensus       259 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~-------~  331 (406)
                      ||..+.........+...+ ++.+.|.                 ++.+|++|+.|+.|++||..++..+..+       .
T Consensus       190 ~d~~~~~~~~~~~~~~~~~-~~~~~~~-----------------~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~  251 (388)
T d1erja_         190 WDLRTGQCSLTLSIEDGVT-TVAVSPG-----------------DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT  251 (388)
T ss_dssp             EETTTTEEEEEEECSSCEE-EEEECST-----------------TCCEEEEEETTSCEEEEETTTCCEEEEEC------C
T ss_pred             eeccccccccccccccccc-cccccCC-----------------CCCeEEEEcCCCeEEEeecccCccceeecccccccc
Confidence            9999877766666555544 4555542                 5679999999999999999998876654       3


Q ss_pred             CCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc------------ceeeccccceEEEEEEeCCCCEEEEeeCCCe
Q psy226          332 GHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN------------MKTLEAHSHFVTSLDFHRAHPYVVTGSVDKT  399 (406)
Q Consensus       332 ~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~------------~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~  399 (406)
                      +|...|.+++|+|++++|++|+.||.|++||+.++..            ......|...|.+++|+|++++|++|+.||.
T Consensus       252 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~  331 (388)
T d1erja_         252 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG  331 (388)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE
Confidence            6888999999999999999999999999999875432            2344568889999999999999999999999


Q ss_pred             EEEeecC
Q psy226          400 VKVWECR  406 (406)
Q Consensus       400 v~iw~~~  406 (406)
                      |++||++
T Consensus       332 i~vwd~~  338 (388)
T d1erja_         332 VLFWDKK  338 (388)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999964

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-37  Score=275.20  Aligned_cols=272  Identities=30%  Similarity=0.514  Sum_probs=232.3

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      ...+|...|+|+.  +++++||||+.||+|+|||+.+++....+++|.+.|.+++|  ++++|++|+.|+.|++|++..+
T Consensus        10 ~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          10 CRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             CCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             ccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccc
Confidence            3567888999875  57899999999999999999999999999999999999987  5689999999999999999988


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCe---EEEEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGY---CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTAR  257 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~  257 (406)
                      ........+....  ..+.+....++++..++.+.+||..+..   ....+..|...+..+.+.  ...+++++.|+.++
T Consensus        86 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~  161 (293)
T d1p22a2          86 EMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK  161 (293)
T ss_dssp             CEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred             ccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCcee
Confidence            7766665544433  3455667789999999999999997654   345567788888877765  45788999999999


Q ss_pred             EEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCE
Q psy226          258 VWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWV  337 (406)
Q Consensus       258 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v  337 (406)
                      +||+++.+.+..+.++...+..+.+.+                    .++++++.|+.|++||+++...+..+.+|...+
T Consensus       162 ~~d~~~~~~~~~~~~~~~~v~~~~~~~--------------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v  221 (293)
T d1p22a2         162 VWNTSTCEFVRTLNGHKRGIACLQYRD--------------------RLVVSGSSDNTIRLWDIECGACLRVLEGHEELV  221 (293)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEEET--------------------TEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             eecCCCCcEEEEEcccccccccccCCC--------------------CeEEEecCCCEEEEEecccceeeeeecccceee
Confidence            999999999999999998888887753                    479999999999999999999999999999888


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          338 RGVTFHPGGKYLVSCGDDKTLRVWDTAN---------KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       338 ~~l~~s~~g~~l~sgs~d~~i~vwd~~~---------~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      ..  +++++.+|++|+.||.|++||+..         ...++++.+|.+.|++++|+  +.+|+|||.||+|++||
T Consensus       222 ~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         222 RC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             ee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            75  456788999999999999999643         23567788999999999995  56899999999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-37  Score=277.43  Aligned_cols=267  Identities=18%  Similarity=0.236  Sum_probs=220.5

Q ss_pred             eEEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCC
Q psy226           99 KFALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMS  178 (406)
Q Consensus        99 ~~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~  178 (406)
                      ..+|.||.++|++++|+|    |+||+.||+|++||..++     ..+|...|.+++++++ ..+++++.|+++++|++.
T Consensus         6 i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~   75 (287)
T d1pgua2           6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGIT   75 (287)
T ss_dssp             EEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEE
T ss_pred             eEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccccccccc
Confidence            457999999999999998    899999999999998764     3689999999999875 468899999999999875


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC-eEE
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH-TAR  257 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~-~v~  257 (406)
                      +.+       ....+..+.+++++..++++ .++.+.+|+..++..+..+..+. .+  .+++|++..+++++.|+ .++
T Consensus        76 ~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~v~~~~~~~v~  144 (287)
T d1pgua2          76 KHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNS-PG--SAVSLSQNYVAVGLEEGNTIQ  144 (287)
T ss_dssp             EEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSS-CE--EEEEECSSEEEEEETTTSCEE
T ss_pred             ccc-------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccccc-ee--eeeeccCcceeeeccccceee
Confidence            321       34457778888887666654 56678899999998888876543 23  45667788888887764 799


Q ss_pred             EEeCCCccceeEEe-cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE-EEeCCCc
Q psy226          258 VWSLATKETKAELR-GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF-TLIGHDN  335 (406)
Q Consensus       258 vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~-~~~~h~~  335 (406)
                      +|++........+. .|...+.+++|+|                  ++.+|++|+.||.|++||+.++.... .+.+|..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~------------------~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~  206 (287)
T d1pgua2         145 VFKLSDLEVSFDLKTPLRAKPSYISISP------------------SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTS  206 (287)
T ss_dssp             EEETTEEEEEEECSSCCSSCEEEEEECT------------------TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSS
T ss_pred             eeeccccceeeeeeeccCCceeEEEecc------------------Cccccccccccccccceeeccccccccccccccc
Confidence            99987655544443 4778899999998                  47899999999999999999988765 4678999


Q ss_pred             CEEEEEEcCC----------CCEEEEEeCCCeEEEEeCCC-CccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          336 WVRGVTFHPG----------GKYLVSCGDDKTLRVWDTAN-KRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       336 ~v~~l~~s~~----------g~~l~sgs~d~~i~vwd~~~-~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      .|.+++|+|.          +.+|++|+.|++|+|||+.+ .+.+..+.+|...|++++|+|++ .|+|+|.||+|++|+
T Consensus       207 ~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence            9999999875          46899999999999999876 55677788999999999999986 688999999999998


Q ss_pred             c
Q psy226          405 C  405 (406)
Q Consensus       405 ~  405 (406)
                      +
T Consensus       286 i  286 (287)
T d1pgua2         286 V  286 (287)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4e-36  Score=269.83  Aligned_cols=245  Identities=20%  Similarity=0.330  Sum_probs=204.8

Q ss_pred             CcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe-cCCcceEEEEEecCCCEEEEEeCCCcEEE
Q psy226          138 GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ-GHDHNVTGVAFLPNSDFVLSASRDKTIKM  216 (406)
Q Consensus       138 ~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~i~i  216 (406)
                      |+..+.++||.++|++|+|+|+|++|++|+.||+|++||+.++++++.+. +|...|.+++|+|++. +++++.|+.+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEE
Confidence            56788999999999999999999999999999999999999999888774 6899999999999987 456678999999


Q ss_pred             EEcCCCeE---EEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCcccccc
Q psy226          217 WEVATGYC---VKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISE  293 (406)
Q Consensus       217 wd~~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  293 (406)
                      |+......   ......+...+.+++++|++.++++++ ++.+++|+....  ...  .....+.+++|+|         
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~--~~~--~~~~~~~~~~~s~---------  146 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL--TEV--PISYNSSCVALSN---------  146 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE--EEE--ECSSCEEEEEECT---------
T ss_pred             eccCCccccccccccccccccccccccccccccccccc-cccccccccccc--ccc--ccccccccccccc---------
Confidence            99864321   122345677889999999999777665 568999985432  222  2344567888887         


Q ss_pred             ccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE-EEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccc---
Q psy226          294 AAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF-TLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNM---  369 (406)
Q Consensus       294 ~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~-~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~---  369 (406)
                               ++.++++|+.|+.|++||+.+++... ....|...|++++|+|++++|++++.|+.|++||+.++...   
T Consensus       147 ---------~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  217 (299)
T d1nr0a2         147 ---------DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT  217 (299)
T ss_dssp             ---------TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred             ---------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                     46789999999999999998877543 45678999999999999999999999999999999876543   


Q ss_pred             eeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          370 KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       370 ~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ..+..|...|++++|+|++++|++|+.||.|++||++
T Consensus       218 ~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN  254 (299)
T ss_dssp             CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ccccccccccccccccccccceEEEcCCCEEEEEECC
Confidence            4567799999999999999999999999999999963

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-36  Score=283.07  Aligned_cols=284  Identities=20%  Similarity=0.343  Sum_probs=216.4

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE------EEEecccccCeeeEE------ECC-CCCEEEEE
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY------ERALHGHLDSVQDIA------FDQ-SGKLLVSC  166 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~------~~~~~~h~~~V~~l~------~~~-~g~~l~sg  166 (406)
                      ...++|.++|+++++++  ++++|||.|++|+|||..+.+.      ......|...+..+.      .+. ++.+++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            34679999999999875  6899999999999999776531      222233444333222      222 23578899


Q ss_pred             eCCCcEEEEeCCCCeE---E--EEE-----ecCCcceEEEEEecCC-----CEEEEEeCCCcEEEEEcCCCe--------
Q psy226          167 SADMSLKLWDMSTYQC---L--KTM-----QGHDHNVTGVAFLPNS-----DFVLSASRDKTIKMWEVATGY--------  223 (406)
Q Consensus       167 s~d~~i~vwd~~~~~~---~--~~~-----~~h~~~v~~~~~~p~~-----~~l~s~s~d~~i~iwd~~~~~--------  223 (406)
                      +.||.|++|++.....   .  ...     ..+...+..++|.+++     .++++++.|+++++|++....        
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            9999999998753211   1  111     1244567888888753     578999999999999974321        


Q ss_pred             ----------EEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCcccee------EEecCCceEEEEEeCCCCC
Q psy226          224 ----------CVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKA------ELRGHDHTVECVAWAPGVA  287 (406)
Q Consensus       224 ----------~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~------~~~~~~~~v~~~~~~~~~~  287 (406)
                                .......+...+.+++|+|++ +|++|+.|++|++||+.+.+.+.      .+.+|..+|.+++|+|   
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp---  241 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP---  241 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS---
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc---
Confidence                      111123455678999999998 88999999999999998876654      3457899999999998   


Q ss_pred             ccccccccCCCCCCCCCCEEEEEeCCCc---EEEEECCCCeEEEEEe-------------CCCcCEEEEEEcCCCCEEEE
Q psy226          288 SESISEAAGRPPGQGGGPYLATGSRDKT---IKLWDVGSGSLLFTLI-------------GHDNWVRGVTFHPGGKYLVS  351 (406)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~---i~lwd~~~~~~~~~~~-------------~h~~~v~~l~~s~~g~~l~s  351 (406)
                                     ++.+|++|+.|++   |++||+.+++++..+.             +|.++|++++|+|++++|+|
T Consensus       242 ---------------dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S  306 (393)
T d1sq9a_         242 ---------------QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  306 (393)
T ss_dssp             ---------------STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             ---------------ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE
Confidence                           4789999999975   8999999998887764             79999999999999999999


Q ss_pred             EeCCCeEEEEeCCCCccceeeccccce---------------------EEEEEEeCCC----------CEEEEeeCCCeE
Q psy226          352 CGDDKTLRVWDTANKRNMKTLEAHSHF---------------------VTSLDFHRAH----------PYVVTGSVDKTV  400 (406)
Q Consensus       352 gs~d~~i~vwd~~~~~~~~~l~~h~~~---------------------v~~l~~~~~~----------~~l~sgs~Dg~v  400 (406)
                      ||.|++|+|||+.+++++.++.+|...                     +.++.|.+.+          ..|++.+.|+.|
T Consensus       307 ~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  386 (393)
T d1sq9a_         307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI  386 (393)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred             ECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeE
Confidence            999999999999999999999888643                     4556665543          358888999999


Q ss_pred             EEee
Q psy226          401 KVWE  404 (406)
Q Consensus       401 ~iw~  404 (406)
                      ++|.
T Consensus       387 r~~~  390 (393)
T d1sq9a_         387 RWFR  390 (393)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9986

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.8e-35  Score=265.74  Aligned_cols=249  Identities=25%  Similarity=0.464  Sum_probs=220.5

Q ss_pred             cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEE
Q psy226          139 EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWE  218 (406)
Q Consensus       139 ~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd  218 (406)
                      +..++++||.++|++|+|+|++++|+||+.||+|++||+.+++.+..+.+|...|.+++|+|++.++++|+.|+.+++|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC----eEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccc
Q psy226          219 VATG----YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEA  294 (406)
Q Consensus       219 ~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  294 (406)
                      ....    .....+.+|.......... .+..+..+..|.....+.............+...+....+.+          
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  194 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP----------  194 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT----------
T ss_pred             ccccccccccceecccccccccccccc-cccccccccccccccccccccccccccccccceeEeeecccc----------
Confidence            7653    3456677787766655444 456788888999999999888777777777788888887776          


Q ss_pred             cCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee--
Q psy226          295 AGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL--  372 (406)
Q Consensus       295 ~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l--  372 (406)
                              .+.++++|+.|+.|++||+++++++..+.+|...|++++|+|++++|++|+.|+.|++||+.....+..+  
T Consensus       195 --------~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~  266 (340)
T d1tbga_         195 --------DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH  266 (340)
T ss_dssp             --------TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             --------ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccc
Confidence                    4668999999999999999999999999999999999999999999999999999999999988776655  


Q ss_pred             ccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          373 EAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       373 ~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ..+...|.+++|+|++++|++|+.||.|++||++
T Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~  300 (340)
T d1tbga_         267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL  300 (340)
T ss_dssp             TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETT
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCEEEEEECC
Confidence            3566679999999999999999999999999963

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8e-36  Score=271.85  Aligned_cols=251  Identities=18%  Similarity=0.261  Sum_probs=207.3

Q ss_pred             CceEEeccCC-CCeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCcE--------EEEecccccCeeeEEECCCCCEEEE
Q psy226           97 PEKFALSGHR-SPVIKVIFHP--VFSLMASCSEDATIRLWDYETGEY--------ERALHGHLDSVQDIAFDQSGKLLVS  165 (406)
Q Consensus        97 ~~~~~l~~h~-~~V~~v~~~p--~~~~latgs~dg~v~vwd~~~~~~--------~~~~~~h~~~V~~l~~~~~g~~l~s  165 (406)
                      +....+.||. .+|++++|+|  ++.+||+|+.||+|+|||+..++.        ...+..|.++|.+++|+++|++|++
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence            4455677885 6899999998  467999999999999999876432        2334568889999999999999988


Q ss_pred             EeC--CCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCE-EEEEeCCCcEEEEEcCCCeEEEEe---ecCCccEEEEE
Q psy226          166 CSA--DMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDF-VLSASRDKTIKMWEVATGYCVKTL---TGHREWVRQIK  239 (406)
Q Consensus       166 gs~--d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~i~iwd~~~~~~~~~~---~~~~~~v~~l~  239 (406)
                      ++.  ++.+++|++.+++++..+.+|...|.+++|+|++.+ +++++.|+.+++||..++.....+   .+|...|.+++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~  212 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  212 (325)
T ss_dssp             EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             eeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence            764  678999999999999999999999999999998874 778999999999999887766655   35677899999


Q ss_pred             ECCC-CCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEE
Q psy226          240 VSPD-GTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKL  318 (406)
Q Consensus       240 ~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~l  318 (406)
                      |+|+ +.++++|+.|+.|++||+++++.+..+.+|..++..+.|++..               .++.+|++++.|+.|+|
T Consensus       213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~---------------~dg~~l~s~s~D~~i~i  277 (325)
T d1pgua1         213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW---------------LDSQKFATVGADATIRV  277 (325)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE---------------SSSSEEEEEETTSEEEE
T ss_pred             eccccceeccccccccceeeeeeccccccccccccccccccceeeeec---------------cCCCEEEEEeCCCeEEE
Confidence            9996 6889999999999999999999999999888776655554210               13678999999999999


Q ss_pred             EECCCCeEEEEEeCCCcC--EEE--EEEcCCCCEEEEEeCCCeEEEEeC
Q psy226          319 WDVGSGSLLFTLIGHDNW--VRG--VTFHPGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       319 wd~~~~~~~~~~~~h~~~--v~~--l~~s~~g~~l~sgs~d~~i~vwd~  363 (406)
                      ||+++++++..+..|...  +..  +.+.++ .+|++||.||+|+|||+
T Consensus       278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         278 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             EECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            999999999888766543  333  444433 47899999999999995

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-36  Score=272.44  Aligned_cols=286  Identities=14%  Similarity=0.122  Sum_probs=219.8

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEE---EEecccccCeeeEEECCC-CCEEEEEeCCCcEEEEe
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYE---RALHGHLDSVQDIAFDQS-GKLLVSCSADMSLKLWD  176 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~---~~~~~h~~~V~~l~~~~~-g~~l~sgs~d~~i~vwd  176 (406)
                      .+++|.+.|++|+|+|++++||+||.||+|+|||+.++...   ....+|..+|.+++|+|+ +.+|++|+.|++|++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            45789999999999999999999999999999999775432   223469999999999986 45899999999999999


Q ss_pred             CCCCeEEEEEecCCcc-eEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEE----EEeecC--CccEEEEEECCCCCEEEE
Q psy226          177 MSTYQCLKTMQGHDHN-VTGVAFLPNSDFVLSASRDKTIKMWEVATGYCV----KTLTGH--REWVRQIKVSPDGTLLAS  249 (406)
Q Consensus       177 ~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~----~~~~~~--~~~v~~l~~~~~~~~l~s  249 (406)
                      +...........+... .....+.++...+++++.|+++++||++++...    .....+  ........+.+.+..+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (342)
T d1yfqa_          86 LIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV  165 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceee
Confidence            9877666665554443 445566778889999999999999998654322    222222  223455677788899999


Q ss_pred             EeCCCeEEEEeCCCcccee---EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE
Q psy226          250 CSNDHTARVWSLATKETKA---ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL  326 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~  326 (406)
                      ++.|+.|++||+.......   ....+...+.+..+.|.                 .+..+++++.||.+.+|+......
T Consensus       166 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~~v~~~~~~~~  228 (342)
T d1yfqa_         166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK-----------------EQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG-----------------GGCEEEEEETTSEEEEEECCTTCC
T ss_pred             ecCCCcEEEEecccCcccceeeeecccccceeeeEeecC-----------------CCCEEEeecCCCeEEEEEecCCcc
Confidence            9999999999997665432   22334445555555542                 356899999999999998754321


Q ss_pred             ---------EE------EEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEE
Q psy226          327 ---------LF------TLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYV  391 (406)
Q Consensus       327 ---------~~------~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l  391 (406)
                               ..      ...+|...|++++|+|++++|+||+.||.|+|||+.+++.+.++..+. .+..++|+|++.+|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l  307 (342)
T d1yfqa_         229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNIL  307 (342)
T ss_dssp             STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEE
T ss_pred             eeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEE
Confidence                     11      113466689999999999999999999999999999999888886432 34567888899999


Q ss_pred             EEeeCCCeEEEee
Q psy226          392 VTGSVDKTVKVWE  404 (406)
Q Consensus       392 ~sgs~Dg~v~iw~  404 (406)
                      ++|+.|+.+++|.
T Consensus       308 ~~a~sdd~~~~~~  320 (342)
T d1yfqa_         308 CLATSDDTFKTNA  320 (342)
T ss_dssp             EEEEECTHHHHCS
T ss_pred             EEEEcCCcEEEee
Confidence            9999998777664

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-33  Score=252.75  Aligned_cols=247  Identities=34%  Similarity=0.619  Sum_probs=197.9

Q ss_pred             EEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCC
Q psy226          133 WDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK  212 (406)
Q Consensus       133 wd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~  212 (406)
                      |+..+.+..+.++||.+.|.+ +++++|++|+||+.||+|+|||+.++++++++.+|...|.+++|+|+  +|++|+.|+
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence            555566677889999999865 35567899999999999999999999999999999999999999874  999999999


Q ss_pred             cEEEEEcCCCeEEEEeecCCccEEEE--------------------------------------EECCCCCEEEEEeCCC
Q psy226          213 TIKMWEVATGYCVKTLTGHREWVRQI--------------------------------------KVSPDGTLLASCSNDH  254 (406)
Q Consensus       213 ~i~iwd~~~~~~~~~~~~~~~~v~~l--------------------------------------~~~~~~~~l~s~~~d~  254 (406)
                      ++++|+............+...+...                                      ...+....+++++.|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            99999987765444333222222111                                      1223345677777888


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCC
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHD  334 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~  334 (406)
                      .+++||+........+.+|...+....+.                    +.++++|+.|+.|++||++.++++..+.+|.
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~  217 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHTNRVYSLQFD--------------------GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ  217 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEEEC--------------------SSEEEEEETTSCEEEEETTTCCEEEEECCCC
T ss_pred             eEEEeecccceeeEEEcCcccccccccCC--------------------CCEEEEEeCCCeEEEeecccceeeeEecccc
Confidence            88888887777777777777666665543                    5689999999999999999999999999999


Q ss_pred             cCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc---ccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          335 NWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA---HSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       335 ~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~---h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ..+.++++++  ++|++|+.|+.|++||....+....+..   |...+.++++++  .++++|+.||+|++||++
T Consensus       218 ~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         218 SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             SCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEETT
T ss_pred             cceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCC--CeeEEEcCCCEEEEEECC
Confidence            9999888765  6999999999999999988877666654   566677777754  699999999999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-32  Score=251.33  Aligned_cols=260  Identities=24%  Similarity=0.466  Sum_probs=202.5

Q ss_pred             EEEecccccCe-eeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEc
Q psy226          141 ERALHGHLDSV-QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEV  219 (406)
Q Consensus       141 ~~~~~~h~~~V-~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~  219 (406)
                      ..+|+||.+.| +|++|  +|++|+||+.||+|+|||+.+++++.++.+|..+|.+++|+|+ ++|++|+.|++|++|+.
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~   81 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence            45689998875 66666  5789999999999999999999999999999999999999985 68999999999999999


Q ss_pred             CCCeEEEEeecCC--ccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCC
Q psy226          220 ATGYCVKTLTGHR--EWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGR  297 (406)
Q Consensus       220 ~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  297 (406)
                      ....+......+.  .......+.+++.++++++.|+.|++||+.+............. ......+.............
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CC-CEEESCTTTCTTEEEEEECC
T ss_pred             cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecccccccee-ccceeccccccceeeeeeec
Confidence            9988776665443  34456677889999999999999999999876543322111110 00111111000000000000


Q ss_pred             C----CCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeec
Q psy226          298 P----PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLE  373 (406)
Q Consensus       298 ~----~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~  373 (406)
                      .    .....+.++++++.|+.|++||+.+++.+....++...+.++.|+|++.++++++.|+.|++||..++..+..+.
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             cccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc
Confidence            0    001246789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          374 AHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       374 ~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      +|...|.+++|++  ++|++|+.||.|++||.+
T Consensus       241 ~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         241 GHTALVGLLRLSD--KFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             CCSSCCCEEEECS--SEEEEECTTSEEEEEETT
T ss_pred             ccccccccccccc--ceeeeeeccccccccccc
Confidence            9999999999975  689999999999999964

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-31  Score=250.44  Aligned_cols=244  Identities=20%  Similarity=0.310  Sum_probs=181.3

Q ss_pred             EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCe------EEEEEecCCcceEEEEE---ec----CCCEEEEE
Q psy226          142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQ------CLKTMQGHDHNVTGVAF---LP----NSDFVLSA  208 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~------~~~~~~~h~~~v~~~~~---~p----~~~~l~s~  208 (406)
                      ...++|.+.|.++++++  ++|+|||.|++|++||..+..      .......|...+..+..   .+    ++.+++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            34578999999999864  699999999999999976432      12223334443332222   12    22467899


Q ss_pred             eCCCcEEEEEcCCCeEEE-----Ee-----ecCCccEEEEEECCC-----CCEEEEEeCCCeEEEEeCCCccc-------
Q psy226          209 SRDKTIKMWEVATGYCVK-----TL-----TGHREWVRQIKVSPD-----GTLLASCSNDHTARVWSLATKET-------  266 (406)
Q Consensus       209 s~d~~i~iwd~~~~~~~~-----~~-----~~~~~~v~~l~~~~~-----~~~l~s~~~d~~v~vwd~~~~~~-------  266 (406)
                      +.||.|++|++.......     ..     ..+...+..+++.++     +.++++++.||++++|++.....       
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            999999999975432111     11     123445666777665     46889999999999999753211       


Q ss_pred             -----------eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE-----
Q psy226          267 -----------KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL-----  330 (406)
Q Consensus       267 -----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~-----  330 (406)
                                 ......+...+.+++|+|+                  + +|++|+.|++|++||+.+++++..+     
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d------------------g-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~  226 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISER------------------G-LIATGFNNGTVQISELSTLRPLYNFESQHS  226 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTT------------------S-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred             eeccceecccceecccCCCCcEEEEEECCC------------------C-EEEEEeCCCcEEEEeecccccccccccccc
Confidence                       0011123344666777662                  3 7999999999999999999887654     


Q ss_pred             -eCCCcCEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCccceeec-------------cccceEEEEEEeCCCCEEEE
Q psy226          331 -IGHDNWVRGVTFHPGGKYLVSCGDDK---TLRVWDTANKRNMKTLE-------------AHSHFVTSLDFHRAHPYVVT  393 (406)
Q Consensus       331 -~~h~~~v~~l~~s~~g~~l~sgs~d~---~i~vwd~~~~~~~~~l~-------------~h~~~v~~l~~~~~~~~l~s  393 (406)
                       .+|..+|++++|+|+|++|++|+.|+   .|++||+.+++.+.++.             +|.+.|++|+|+|++++|+|
T Consensus       227 l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S  306 (393)
T d1sq9a_         227 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  306 (393)
T ss_dssp             --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             cccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE
Confidence             46899999999999999999999987   49999999988777664             79999999999999999999


Q ss_pred             eeCCCeEEEeecC
Q psy226          394 GSVDKTVKVWECR  406 (406)
Q Consensus       394 gs~Dg~v~iw~~~  406 (406)
                      ||.||+|++||.+
T Consensus       307 ~s~D~~v~vWd~~  319 (393)
T d1sq9a_         307 AGWDGKLRFWDVK  319 (393)
T ss_dssp             EETTSEEEEEETT
T ss_pred             ECCCCEEEEEECC
Confidence            9999999999963

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=3.1e-32  Score=249.89  Aligned_cols=269  Identities=13%  Similarity=0.052  Sum_probs=213.9

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEEe
Q psy226          111 KVIFHP-VFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADM--SLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       111 ~v~~~p-~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~--~i~vwd~~~~~~~~~~~  187 (406)
                      .-.||| ||+++|+++ +|.|++||..++...+.  +|...|.+++|+|||++|++++.+.  .|++||+.+++. ..+.
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~   82 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFE   82 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEee
Confidence            357999 999999987 47999999998887653  6899999999999999998877653  799999988765 4677


Q ss_pred             cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEe----------CCCeEE
Q psy226          188 GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCS----------NDHTAR  257 (406)
Q Consensus       188 ~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~----------~d~~v~  257 (406)
                      .|...|.+++|+|++++|++++.++.+++|++.++.....+..|...+.+++|+|+|++|+.++          .++.++
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence            8999999999999999999999999999999999999999999999999999999999998654          455799


Q ss_pred             EEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE-------EEEE
Q psy226          258 VWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL-------LFTL  330 (406)
Q Consensus       258 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~-------~~~~  330 (406)
                      +||+.+++.. .+..+...+..+.|+|                  +|.+|++++.|+.+++||......       ...+
T Consensus       163 v~d~~~~~~~-~~~~~~~~~~~~~~sp------------------dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~  223 (360)
T d1k32a3         163 VYDMEGRKIF-AATTENSHDYAPAFDA------------------DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI  223 (360)
T ss_dssp             EEETTTTEEE-ECSCSSSBEEEEEECT------------------TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEE
T ss_pred             eeccccCcee-eecccccccccccccC------------------CCCEEEEEeCCCceEcccccccceeeccccceEEE
Confidence            9999876543 4445667788889988                  477899999999999998643221       1111


Q ss_pred             eCC------------------------------------CcCEEEEEEcCCC-------------CEEEEEeCCCeEEEE
Q psy226          331 IGH------------------------------------DNWVRGVTFHPGG-------------KYLVSCGDDKTLRVW  361 (406)
Q Consensus       331 ~~h------------------------------------~~~v~~l~~s~~g-------------~~l~sgs~d~~i~vw  361 (406)
                      ..|                                    ......+...+++             .++++++.++.|++|
T Consensus       224 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  303 (360)
T d1k32a3         224 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY  303 (360)
T ss_dssp             ESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEE
T ss_pred             ecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEE
Confidence            111                                    1112233333322             245566778999999


Q ss_pred             eCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          362 DTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       362 d~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      |+.+++.    ..|.+.|.+++|+|||++|++++.||.|++||..
T Consensus       304 d~~~~~~----~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         304 DVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE  344 (360)
T ss_dssp             ETTTCCE----EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESS
T ss_pred             ECCCCeE----EEecCCcCEEEECCCCCEEEEEECCCeEEEEECC
Confidence            9987643    3455679999999999999999999999999963

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-29  Score=224.78  Aligned_cols=234  Identities=27%  Similarity=0.564  Sum_probs=199.4

Q ss_pred             EEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q psy226          142 RALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVAT  221 (406)
Q Consensus       142 ~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~  221 (406)
                      .....|...|+|++|  +|++|+||+.||+|+|||+.+++++.++.+|...|.+++|  ++++|++|+.|++|++|++..
T Consensus         9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2           9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             eccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccc
Confidence            334567788998765  6899999999999999999999999999999999999887  578999999999999999999


Q ss_pred             CeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc---eeEEecCCceEEEEEeCCCCCccccccccCCC
Q psy226          222 GYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET---KAELRGHDHTVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       222 ~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                      +........+....  ..+.+....++++..++.+++|+......   ...+..|...+....+.+              
T Consensus        85 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------------  148 (293)
T d1p22a2          85 GEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--------------  148 (293)
T ss_dssp             CCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--------------
T ss_pred             cccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceecc--------------
Confidence            88777766555443  34456677899999999999999977553   344566777777776654              


Q ss_pred             CCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccce
Q psy226          299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF  378 (406)
Q Consensus       299 ~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~  378 (406)
                            ..+++++.|+.|++||+++++.+..+.+|...+..+.++  +.++++++.||.|++||+.+.+.+..+.+|...
T Consensus       149 ------~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  220 (293)
T d1p22a2         149 ------KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL  220 (293)
T ss_dssp             ------TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ------cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeeccccee
Confidence                  468899999999999999999999999999999888875  568999999999999999999999999989888


Q ss_pred             EEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          379 VTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       379 v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                      +..  +.+++.+|++|+.||.|++||+
T Consensus       221 v~~--~~~~~~~l~sg~~dg~i~iwd~  245 (293)
T d1p22a2         221 VRC--IRFDNKRIVSGAYDGKIKVWDL  245 (293)
T ss_dssp             EEE--EECCSSEEEEEETTSCEEEEEH
T ss_pred             eee--ccccceEEEEEcCCCEEEEEEC
Confidence            875  5567889999999999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-30  Score=233.46  Aligned_cols=250  Identities=14%  Similarity=0.086  Sum_probs=186.9

Q ss_pred             cEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE---EEEEecCCcceEEEEEecCC-CEEEEEeCCCcE
Q psy226          139 EYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC---LKTMQGHDHNVTGVAFLPNS-DFVLSASRDKTI  214 (406)
Q Consensus       139 ~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~---~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i  214 (406)
                      +.+...++|.+.|++|+|+|++++|++||.||+|+|||+.+...   +....+|..+|.+++|+|++ .+|++|+.|++|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            45667789999999999999999999999999999999865432   33444799999999999975 478999999999


Q ss_pred             EEEEcCCCeEEEEeecCCcc-EEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe----cCC--ceEEEEEeCCCCC
Q psy226          215 KMWEVATGYCVKTLTGHREW-VRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR----GHD--HTVECVAWAPGVA  287 (406)
Q Consensus       215 ~iwd~~~~~~~~~~~~~~~~-v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~----~~~--~~v~~~~~~~~~~  287 (406)
                      ++|++..+........+... .....+.+++..+++++.|+++++||++.........    .+.  .......+.+   
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  158 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT---  158 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE---
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec---
Confidence            99999888776666554443 3455566788899999999999999987654332221    111  1111112211   


Q ss_pred             ccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE---EEEEeCCCcCEEEEEEc-CCCCEEEEEeCCCeEEEEeC
Q psy226          288 SESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL---LFTLIGHDNWVRGVTFH-PGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~---~~~~~~h~~~v~~l~~s-~~g~~l~sgs~d~~i~vwd~  363 (406)
                                     .+..+++++.|+.|++||++....   ......+...+.+..+. +++..+++++.||.+.+|+.
T Consensus       159 ---------------~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~  223 (342)
T d1yfqa_         159 ---------------NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF  223 (342)
T ss_dssp             ---------------CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred             ---------------cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEe
Confidence                           356799999999999999976543   22333444556665554 46788999999999999987


Q ss_pred             CCCccc---------------eeeccccceEEEEEEeCCCCEEEEeeCCCeEEEeecC
Q psy226          364 ANKRNM---------------KTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWECR  406 (406)
Q Consensus       364 ~~~~~~---------------~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~~  406 (406)
                      ......               .....|...|++|+|+|++++||||+.||.|++||++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             cCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECC
Confidence            643211               1123466679999999999999999999999999964

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.1e-29  Score=222.40  Aligned_cols=242  Identities=18%  Similarity=0.212  Sum_probs=192.8

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      ...+|..+|.++++++.. .+++++.|++|++|+..+.+       +...+.++++++++..++++ .++.+.+|+..++
T Consensus        41 ~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  111 (287)
T d1pgua2          41 MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTG  111 (287)
T ss_dssp             EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTC
T ss_pred             CCCCCCCCEEEEEecCCC-eEEEEeeccccccccccccc-------cccceeeeeeccCCceEEEe-ecccceeeeccce
Confidence            356899999999999764 67999999999999865422       23457788999988777765 5567889999988


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEeCCC-cEEEEEcCCCeEEEEee-cCCccEEEEEECCCCCEEEEEeCCCeEEE
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK-TIKMWEVATGYCVKTLT-GHREWVRQIKVSPDGTLLASCSNDHTARV  258 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d~~v~v  258 (406)
                      +.+..+..+. .+  .+++|+++.+++++.|+ .+++|++........+. .|...+.+++|+|++.+|++|+.||.|++
T Consensus       112 ~~~~~~~~~~-~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i  188 (287)
T d1pgua2         112 DIIKSVRLNS-PG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILL  188 (287)
T ss_dssp             CEEEEEECSS-CE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eeeeeccccc-ee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccc
Confidence            8887776443 33  45778888888877765 79999998766555544 47788999999999999999999999999


Q ss_pred             EeCCCcccee-EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCcC
Q psy226          259 WSLATKETKA-ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS-GSLLFTLIGHDNW  336 (406)
Q Consensus       259 wd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~-~~~~~~~~~h~~~  336 (406)
                      ||+.+..... .+.+|...|.+++|+|.......        ...++.++++|+.|+.|++||+++ ++.+..+.+|...
T Consensus       189 ~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~--------~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~  260 (287)
T d1pgua2         189 YDLQSREVKTSRWAFRTSKINAISWKPAEKGANE--------EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG  260 (287)
T ss_dssp             EETTTTEEEECCSCCCSSCEEEEEECCCC--------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC
T ss_pred             eeecccccccccccccccccceeeeccccccccc--------ccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCC
Confidence            9998876543 46789999999999986432111        123567999999999999999976 5567777899999


Q ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeC
Q psy226          337 VRGVTFHPGGKYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       337 v~~l~~s~~g~~l~sgs~d~~i~vwd~  363 (406)
                      |++++|+|++ .|+++|.|++|++||+
T Consensus       261 V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         261 VNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            9999999986 5889999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=5.3e-29  Score=228.12  Aligned_cols=271  Identities=13%  Similarity=0.095  Sum_probs=203.4

Q ss_pred             ccCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCC
Q psy226          103 SGHRSPVIKVIFHPVFSLMASCSEDA--TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTY  180 (406)
Q Consensus       103 ~~h~~~V~~v~~~p~~~~latgs~dg--~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~  180 (406)
                      .+|...|.+++|+|+++.|++++.+.  .|++||..+++.. .+..|...|.+++|+|+|++|++++.++.+++|++.++
T Consensus        39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceecccccccccccccc
Confidence            37999999999999999998776554  7999999988755 56789999999999999999999999999999999999


Q ss_pred             eEEEEEecCCcceEEEEEecCCCEEEEEe----------CCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEE
Q psy226          181 QCLKTMQGHDHNVTGVAFLPNSDFVLSAS----------RDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASC  250 (406)
Q Consensus       181 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s----------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~  250 (406)
                      +....+..|...+.+++|+|+|++|+.++          .++.+++||+.++.... +..+...+..++|+|+|+.|+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~  196 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYL  196 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEE
T ss_pred             ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEE
Confidence            99999999999999999999999988653          34568999999876544 44567778899999999999999


Q ss_pred             eCCCeEEEEeCCCccce-------eEEecCCceEEEEEeCCCCCcccc---------ccccCC-----------------
Q psy226          251 SNDHTARVWSLATKETK-------AELRGHDHTVECVAWAPGVASESI---------SEAAGR-----------------  297 (406)
Q Consensus       251 ~~d~~v~vwd~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~---------~~~~~~-----------------  297 (406)
                      +.|+.+++||.......       ..+..|...+..+.|.|.......         ......                 
T Consensus       197 s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (360)
T d1k32a3         197 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI  276 (360)
T ss_dssp             ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE
T ss_pred             eCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCc
Confidence            99999999997543221       111122222211222221100000         000000                 


Q ss_pred             -----CCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee
Q psy226          298 -----PPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL  372 (406)
Q Consensus       298 -----~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l  372 (406)
                           ......+.++++++.++.|++||+.+++.. .   |.+.|.+++|||||++|++++.||.|++||+.+++...++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~---~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-E---VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-E---EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred             eEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-E---ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence                 000011224556667889999999887653 2   3445899999999999999999999999999999988888


Q ss_pred             ccccceE
Q psy226          373 EAHSHFV  379 (406)
Q Consensus       373 ~~h~~~v  379 (406)
                      ..+..++
T Consensus       353 ~~d~~~~  359 (360)
T d1k32a3         353 ETDKRPL  359 (360)
T ss_dssp             CCCSSCE
T ss_pred             Eeccccc
Confidence            7665543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=1.8e-28  Score=231.24  Aligned_cols=287  Identities=12%  Similarity=0.066  Sum_probs=205.8

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE--E---ecCCcce
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKT--M---QGHDHNV  193 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~--~---~~h~~~v  193 (406)
                      -++++++.||+|+|||..+++.+.++..| ..+.+++|+|||++|++++.|++|++||+.+++....  +   .+|...+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            35688999999999999999999999877 4689999999999999999999999999998764432  2   3566667


Q ss_pred             EEEEEecCCCEEEE-EeCCCcEEEEEcCCCeEEEEeecCCccE-----------EEEEECCCCCEEEEEeC-CCeEEEEe
Q psy226          194 TGVAFLPNSDFVLS-ASRDKTIKMWEVATGYCVKTLTGHREWV-----------RQIKVSPDGTLLASCSN-DHTARVWS  260 (406)
Q Consensus       194 ~~~~~~p~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~v-----------~~l~~~~~~~~l~s~~~-d~~v~vwd  260 (406)
                      .+++|+|||+++++ +..++++++||..++.+...+.+|...+           ..+..++++..++.... .+.+.+++
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~  191 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN  191 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            78888999998754 5589999999999999888877664433           44556666665544433 34555555


Q ss_pred             CCCccc-eeEEecCCceEEEEEeCCCCCcccccc-------------------c-cC-CCCC--------CCCC-CEEEE
Q psy226          261 LATKET-KAELRGHDHTVECVAWAPGVASESISE-------------------A-AG-RPPG--------QGGG-PYLAT  309 (406)
Q Consensus       261 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------------~-~~-~~~~--------~~~~-~~l~s  309 (406)
                      ...... ......+...+..+.+.|+........                   . .. .+..        ...+ ...++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (426)
T d1hzua2         192 YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS  271 (426)
T ss_dssp             CSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEE
T ss_pred             eccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEec
Confidence            544332 223345666677788877643211100                   0 00 0000        0011 12233


Q ss_pred             EeCCCcEEEEECCC-------CeEEEEEeCCCcCEEEEEEcCCCCEEEE-------EeCCCeEEEEeCCCCccceeec--
Q psy226          310 GSRDKTIKLWDVGS-------GSLLFTLIGHDNWVRGVTFHPGGKYLVS-------CGDDKTLRVWDTANKRNMKTLE--  373 (406)
Q Consensus       310 ~~~d~~i~lwd~~~-------~~~~~~~~~h~~~v~~l~~s~~g~~l~s-------gs~d~~i~vwd~~~~~~~~~l~--  373 (406)
                      .+.|+.+.+|+...       ++....+.+|...+..++|+|+|++|++       ++.|++|+|||+.+++...++.  
T Consensus       272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~  351 (426)
T d1hzua2         272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI  351 (426)
T ss_dssp             CTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred             cCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEecc
Confidence            44678888888654       4788899999999999999999999994       5668999999999987765542  


Q ss_pred             -------cccceEEEEEEeCCCCEEE-Ee----eCCCeEEEeecC
Q psy226          374 -------AHSHFVTSLDFHRAHPYVV-TG----SVDKTVKVWECR  406 (406)
Q Consensus       374 -------~h~~~v~~l~~~~~~~~l~-sg----s~Dg~v~iw~~~  406 (406)
                             .|...|..++|+|||++++ ++    +.||.|+|||.+
T Consensus       352 ~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         352 AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             HHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             chhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence                   3455699999999999763 32    468999999963

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=1.3e-25  Score=200.09  Aligned_cols=262  Identities=17%  Similarity=0.179  Sum_probs=209.6

Q ss_pred             EEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEe
Q psy226          121 MASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLL-VSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFL  199 (406)
Q Consensus       121 latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l-~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~  199 (406)
                      .++++.|++|.|||..+++.++.+... ..+..++|+|+|++| ++++.++.|++||+.+++.+..+..+. .+..+.|+
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~   82 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS   82 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccc
Confidence            356788999999999999998888743 457899999999987 466788999999999999999888776 46889999


Q ss_pred             cCCCEEE-EEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEE-EEeCCCeEEEEeCCCccceeEEecCCceE
Q psy226          200 PNSDFVL-SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLA-SCSNDHTARVWSLATKETKAELRGHDHTV  277 (406)
Q Consensus       200 p~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~v  277 (406)
                      +++..++ ++..++.+.+|+..++.....+..+ .....+.++|+|..++ ++..++.+.+|+..+......+..+. .+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  160 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SP  160 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SE
T ss_pred             cccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC-Cc
Confidence            9998655 5667789999999999888887655 4567899999998775 55578899999999887777665543 46


Q ss_pred             EEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC-CCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEe---
Q psy226          278 ECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR-DKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCG---  353 (406)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs---  353 (406)
                      ..+.+.|+                  +.++++++. ++.+.+|+.........+..+ ..+..++|++++..++.++   
T Consensus       161 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~  221 (301)
T d1l0qa2         161 KGIAVTPD------------------GTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDK  221 (301)
T ss_dssp             EEEEECTT------------------SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECS
T ss_pred             eEEEeecc------------------ccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccc
Confidence            67788773                  445555554 467788888777766665544 4578899999999887654   


Q ss_pred             CCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEE-EEeeCCCeEEEeecC
Q psy226          354 DDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYV-VTGSVDKTVKVWECR  406 (406)
Q Consensus       354 ~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l-~sgs~Dg~v~iw~~~  406 (406)
                      .++.|++||..+++.+..+..+. .+.+++|+|+|++| ++++.|++|++||..
T Consensus       222 ~~~~v~v~D~~t~~~~~~~~~~~-~~~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         222 YFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             SCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             eeeeeeeeecCCCeEEEEEcCCC-CEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            34689999999999888887554 57999999999976 688889999999963

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=2.4e-25  Score=201.47  Aligned_cols=274  Identities=12%  Similarity=0.110  Sum_probs=206.5

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEecc--cccCeeeEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEecCCc----
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHG--HLDSVQDIAFDQSGKLL-VSCSADMSLKLWDMSTYQCLKTMQGHDH----  191 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~--h~~~V~~l~~~~~g~~l-~sgs~d~~i~vwd~~~~~~~~~~~~h~~----  191 (406)
                      .++++++.|++|+|||+.+++....+..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            4799999999999999999999888864  34568899999999987 4667899999999999999888876543    


Q ss_pred             -ceEEEEEecCCCEEEEEe------------CCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Q psy226          192 -NVTGVAFLPNSDFVLSAS------------RDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARV  258 (406)
Q Consensus       192 -~v~~~~~~p~~~~l~s~s------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~v  258 (406)
                       .+..++|+|+++++++++            .+..+.+||..++.....+..+ ..+..++|+|+|+++++++.+  +.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD--LHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS--EEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC--cce
Confidence             345789999999988776            4678899999999888887654 557889999999999998654  678


Q ss_pred             EeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCC-------------CEEEEEeCCCcEEEEECCCCe
Q psy226          259 WSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGG-------------PYLATGSRDKTIKLWDVGSGS  325 (406)
Q Consensus       259 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~s~~~d~~i~lwd~~~~~  325 (406)
                      ||..+......+..+.... ...+.|+...       ..+.....+             .....++.++.+.+||..++.
T Consensus       159 ~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWEA-ETYAQPDVLA-------VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE  230 (337)
T ss_dssp             EETTTTEEEEEECSTTTTT-TTBCCCBCCC-------CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred             eeeecCcEEEEeecCCccc-cceecCCcce-------eeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc
Confidence            9998877665554332210 0011111000       000000000             011112334569999999887


Q ss_pred             EEE-EEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEEEee
Q psy226          326 LLF-TLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       326 ~~~-~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~  404 (406)
                      ... .+..+...+..+.++|++.+++++  ++.|++||+.+++.+..+. +...+.+++|+|+|++|++|+.||.|++||
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            654 355677888999999999998766  4899999999999888875 456788999999999999999999999999


Q ss_pred             cC
Q psy226          405 CR  406 (406)
Q Consensus       405 ~~  406 (406)
                      .+
T Consensus       308 ~~  309 (337)
T d1pbyb_         308 AE  309 (337)
T ss_dssp             TT
T ss_pred             CC
Confidence            63

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=3.1e-25  Score=209.08  Aligned_cols=169  Identities=11%  Similarity=-0.020  Sum_probs=133.9

Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeE--EEEE---ecCCc
Q psy226          117 VFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQC--LKTM---QGHDH  191 (406)
Q Consensus       117 ~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~--~~~~---~~h~~  191 (406)
                      ..-++++.+.||+|.|||..+++.+..+..| ..+..++|+|||++|++++.|++|++||+.+++.  ...+   .+|.+
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            3345689999999999999999999999876 4699999999999999999999999999987653  2232   35666


Q ss_pred             ceEEEEEecCCCEE-EEEeCCCcEEEEEcCCCeEEEEeecCC-----------ccEEEEEECCCCCEE-EEEeCCCeEEE
Q psy226          192 NVTGVAFLPNSDFV-LSASRDKTIKMWEVATGYCVKTLTGHR-----------EWVRQIKVSPDGTLL-ASCSNDHTARV  258 (406)
Q Consensus       192 ~v~~~~~~p~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~-----------~~v~~l~~~~~~~~l-~s~~~d~~v~v  258 (406)
                      .+.+..|+|||++| ++++.+++|++||..+++.+..+..|.           .....+.++|+|..+ ++...++.+.+
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence            67777888999976 678889999999999999888876543           345678899999875 56677899999


Q ss_pred             EeCCCccceeEEe-cCCceEEEEEeCCCC
Q psy226          259 WSLATKETKAELR-GHDHTVECVAWAPGV  286 (406)
Q Consensus       259 wd~~~~~~~~~~~-~~~~~v~~~~~~~~~  286 (406)
                      ||..+.+...... .+...+..+.++|+.
T Consensus       190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg  218 (432)
T d1qksa2         190 VDYTDLNNLKTTEISAERFLHDGGLDGSH  218 (432)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTS
T ss_pred             EEccCCCcceEEEEcccCccccceECCCC
Confidence            9988765443222 345567788898863

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=2.8e-25  Score=209.19  Aligned_cols=285  Identities=10%  Similarity=0.031  Sum_probs=190.6

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEE-----ecccccCeeeEEECCCCCEEEE-EeCCCcEE
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERA-----LHGHLDSVQDIAFDQSGKLLVS-CSADMSLK  173 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~-----~~~h~~~V~~l~~~~~g~~l~s-gs~d~~i~  173 (406)
                      ..+..|. .+..++|+|||++|++++.||+|++||+.+++....     ..+|...+.+++|+|||++|++ +..+++++
T Consensus        56 ~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~  134 (426)
T d1hzua2          56 KVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFA  134 (426)
T ss_dssp             EEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred             EEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEE
Confidence            3566664 589999999999999999999999999998874332     2367777888999999998755 45789999


Q ss_pred             EEeCCCCeEEEEEecCCcceEEEEEecCCCE-EEEEeCCCc-----------EEEEEcCCCeE-EEEeecCCccEEEEEE
Q psy226          174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDF-VLSASRDKT-----------IKMWEVATGYC-VKTLTGHREWVRQIKV  240 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~-----------i~iwd~~~~~~-~~~~~~~~~~v~~l~~  240 (406)
                      +||..++.+...+.+|...+....+.+++.. .++.+.|+.           +.+++...+.. .....++...+..+.+
T Consensus       135 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (426)
T d1hzua2         135 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGW  214 (426)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEE
T ss_pred             EEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeE
Confidence            9999999988888777655544444444432 233334443           44444433321 2233456777889999


Q ss_pred             CCCCCEEEEEe-CCCeEEEEeCCCccceeEEe---------------cCCceEEEEEeCCCCCcc---------------
Q psy226          241 SPDGTLLASCS-NDHTARVWSLATKETKAELR---------------GHDHTVECVAWAPGVASE---------------  289 (406)
Q Consensus       241 ~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~---------------  289 (406)
                      +|++++++++. .+..+.+++..+........               .+...+......++....               
T Consensus       215 ~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~  294 (426)
T d1hzua2         215 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK  294 (426)
T ss_dssp             CTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTS
T ss_pred             CCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccce
Confidence            99999877665 56678888887765544332               122233333322221000               


Q ss_pred             cccccc------CCCCCCCCCCEEEE-------EeCCCcEEEEECCCCeEEEEEe---------CCCcCEEEEEEcCCCC
Q psy226          290 SISEAA------GRPPGQGGGPYLAT-------GSRDKTIKLWDVGSGSLLFTLI---------GHDNWVRGVTFHPGGK  347 (406)
Q Consensus       290 ~~~~~~------~~~~~~~~~~~l~s-------~~~d~~i~lwd~~~~~~~~~~~---------~h~~~v~~l~~s~~g~  347 (406)
                      ......      ......+++.+|++       ++.|++|+|||+.+++...++.         .|...|..++|||||+
T Consensus       295 ~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk  374 (426)
T d1hzua2         295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD  374 (426)
T ss_dssp             EEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS
T ss_pred             EeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCC
Confidence            000000      01123456788884       5568899999999987665542         3556799999999999


Q ss_pred             EEE-EE----eCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEE
Q psy226          348 YLV-SC----GDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYV  391 (406)
Q Consensus       348 ~l~-sg----s~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l  391 (406)
                      +++ ++    +.++.|+|||..+.+..+.+.++.      .++|+|+|-
T Consensus       375 ~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         375 EVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             EEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred             EEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence            774 43    358899999999999888887664      245666653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=1.8e-25  Score=203.05  Aligned_cols=289  Identities=11%  Similarity=0.023  Sum_probs=208.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEEecC
Q psy226          112 VIFHPVFSLMASCSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGKLL-VSCSADMSLKLWDMSTYQCLKTMQGH  189 (406)
Q Consensus       112 v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g~~l-~sgs~d~~i~vwd~~~~~~~~~~~~h  189 (406)
                      ++|++++++|++++.|++|.|||+.+++...++. .|...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4689999999999999999999999999998887 456678899999999987 45567899999999999888776543


Q ss_pred             C------cceEEEEEecCCCEEEEEe------------CCCcEEEEEcCCCeEEEEeecC--CccEEEEEECCCCCEEEE
Q psy226          190 D------HNVTGVAFLPNSDFVLSAS------------RDKTIKMWEVATGYCVKTLTGH--REWVRQIKVSPDGTLLAS  249 (406)
Q Consensus       190 ~------~~v~~~~~~p~~~~l~s~s------------~d~~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~s  249 (406)
                      .      ..+..++|+|+|+++++++            .+..+.+||..++.....+..+  ...+..+.+++++.++++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            2      2356799999999887765            4678899998887654433322  234555677778876654


Q ss_pred             EeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccc--------cCCCCCCCCCCEEEEEeCCCcEEEEEC
Q psy226          250 CSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEA--------AGRPPGQGGGPYLATGSRDKTIKLWDV  321 (406)
Q Consensus       250 ~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~s~~~d~~i~lwd~  321 (406)
                         ++.+.+|++.+......+..+.. ...+.++|..........        ............++++..+..+.+||+
T Consensus       162 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (346)
T d1jmxb_         162 ---GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL  237 (346)
T ss_dssp             ---SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred             ---CCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence               35688999988777666654432 122233332111000000        000000112233455566778999999


Q ss_pred             CCCeEEE-EEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeE
Q psy226          322 GSGSLLF-TLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTV  400 (406)
Q Consensus       322 ~~~~~~~-~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v  400 (406)
                      .++.... .+..|...+..+.+++++.+++.++. +.|++||..+++.+..+. +.+.+.+++|+|||++|++++.||.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v  315 (346)
T d1jmxb_         238 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDL  315 (346)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEE
T ss_pred             CCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcE
Confidence            9887654 45568888999999999988887764 579999999998887775 34568999999999999999999999


Q ss_pred             EEeecC
Q psy226          401 KVWECR  406 (406)
Q Consensus       401 ~iw~~~  406 (406)
                      ++||.+
T Consensus       316 ~v~D~~  321 (346)
T d1jmxb_         316 AVFNPD  321 (346)
T ss_dssp             EEEETT
T ss_pred             EEEECc
Confidence            999963

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=1.2e-22  Score=180.72  Aligned_cols=245  Identities=20%  Similarity=0.222  Sum_probs=193.5

Q ss_pred             CCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEE
Q psy226          107 SPVIKVIFHPVFSLM-ASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLV-SCSADMSLKLWDMSTYQCLK  184 (406)
Q Consensus       107 ~~V~~v~~~p~~~~l-atgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~-sgs~d~~i~vwd~~~~~~~~  184 (406)
                      ..+..++|+|++++| ++++.++.|++||+.+++....+..|. .+..++|++++..++ ++..++.+.+|+..+++...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeee
Confidence            456889999999977 577789999999999999988887765 468899999998665 55567899999999998888


Q ss_pred             EEecCCcceEEEEEecCCCEEE-EEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCC-CeEEEEeCC
Q psy226          185 TMQGHDHNVTGVAFLPNSDFVL-SASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSND-HTARVWSLA  262 (406)
Q Consensus       185 ~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-~~v~vwd~~  262 (406)
                      .+..+ ....++.|+|++..++ ++..++.+.+|+..++..+..+..+. .+..+.++|++..+++++.+ +.+.+|+..
T Consensus       111 ~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (301)
T d1l0qa2         111 TVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTV  188 (301)
T ss_dssp             EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC-CceEEEeeccccceeeeccccccccccccc
Confidence            77655 4678899999998765 56668899999999998888876554 47789999999988777765 667777776


Q ss_pred             CccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe---CCCcEEEEECCCCeEEEEEeCCCcCEEE
Q psy226          263 TKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS---RDKTIKLWDVGSGSLLFTLIGHDNWVRG  339 (406)
Q Consensus       263 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~lwd~~~~~~~~~~~~h~~~v~~  339 (406)
                      ..........+ ..+..+.+.++                  +..++.++   .++.|++||+.+++.+..+..+ ..+.+
T Consensus       189 ~~~~~~~~~~~-~~~~~~~~~~~------------------g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~  248 (301)
T d1l0qa2         189 TNSVIDTVKVE-AAPSGIAVNPE------------------GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAG  248 (301)
T ss_dssp             TTEEEEEEECS-SEEEEEEECTT------------------SSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEE
T ss_pred             ceeeeeccccc-CCcceeecccc------------------ccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEE
Confidence            66555554443 44566777763                  44454443   3468999999999998887654 45899


Q ss_pred             EEEcCCCCEE-EEEeCCCeEEEEeCCCCccceeecc
Q psy226          340 VTFHPGGKYL-VSCGDDKTLRVWDTANKRNMKTLEA  374 (406)
Q Consensus       340 l~~s~~g~~l-~sgs~d~~i~vwd~~~~~~~~~l~~  374 (406)
                      ++|+|+|++| ++++.|++|++||+.+++.++++..
T Consensus       249 va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         249 IAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            9999999987 5778899999999999998888753

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=2.4e-23  Score=196.04  Aligned_cols=268  Identities=11%  Similarity=-0.025  Sum_probs=183.3

Q ss_pred             EEeccCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcE--EEE---ecccccCeeeEEECCCCCEE-EEEeCCCcEE
Q psy226          100 FALSGHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEY--ERA---LHGHLDSVQDIAFDQSGKLL-VSCSADMSLK  173 (406)
Q Consensus       100 ~~l~~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~--~~~---~~~h~~~V~~l~~~~~g~~l-~sgs~d~~i~  173 (406)
                      ..+..| ..+..++|+|||+++++++.||+|++||+.+++.  ...   ..+|.+.+.+..|+|||++| ++++.+++|+
T Consensus        56 ~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~  134 (432)
T d1qksa2          56 TVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYV  134 (432)
T ss_dssp             EEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             EEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEE
Confidence            345555 3589999999999999999999999999988763  222   23567778888899999976 6788899999


Q ss_pred             EEeCCCCeEEEEEecC-----------CcceEEEEEecCCCEE-EEEeCCCcEEEEEcCCCeEEEEee-cCCccEEEEEE
Q psy226          174 LWDMSTYQCLKTMQGH-----------DHNVTGVAFLPNSDFV-LSASRDKTIKMWEVATGYCVKTLT-GHREWVRQIKV  240 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h-----------~~~v~~~~~~p~~~~l-~s~s~d~~i~iwd~~~~~~~~~~~-~~~~~v~~l~~  240 (406)
                      +||..+++.+..+..|           ......+.++|++..+ ++.+.++.|.+||..++....... .+...+..++|
T Consensus       135 i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~  214 (432)
T d1qksa2         135 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL  214 (432)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred             EEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceE
Confidence            9999999988877654           3446678899998865 556778999999998876554333 34566889999


Q ss_pred             CCCCCEEEEEe-CCCeEEEEeCCCccceeEEec-----CC---------------------------------------c
Q psy226          241 SPDGTLLASCS-NDHTARVWSLATKETKAELRG-----HD---------------------------------------H  275 (406)
Q Consensus       241 ~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~-----~~---------------------------------------~  275 (406)
                      +|+|+++++++ .++.+.++|..+......+..     |.                                       .
T Consensus       215 spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~  294 (432)
T d1qksa2         215 DGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW  294 (432)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred             CCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccccccc
Confidence            99999877666 466888888876554433211     00                                       0


Q ss_pred             eEEEEEeCCCCCccccccccCCCC--------------------CCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCc
Q psy226          276 TVECVAWAPGVASESISEAAGRPP--------------------GQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDN  335 (406)
Q Consensus       276 ~v~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~  335 (406)
                      .+....+.|+......   ...+.                    ...++..+++++.|+.+++||+.++.   .+..|..
T Consensus       295 ~v~~~~~~~~g~~~~~---~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~---~l~~~~~  368 (432)
T d1qksa2         295 KILDSFPALGGGSLFI---KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA---GITEGQP  368 (432)
T ss_dssp             SEEEEEECSCSCCCCE---ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH---TCCSSCC
T ss_pred             EEEEEEEcCCCCeEEE---EecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEeccccccc---ccCCCCC
Confidence            1111111111000000   00000                    00124455666666677777654432   2235667


Q ss_pred             CEEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCCccceeecc
Q psy226          336 WVRGVTFHPGGKYLVSCG-----DDKTLRVWDTANKRNMKTLEA  374 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs-----~d~~i~vwd~~~~~~~~~l~~  374 (406)
                      .|..++|||||++|+.+.     .+|.|.|||..+.+..+.+++
T Consensus       369 ~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~  412 (432)
T d1qksa2         369 RVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  412 (432)
T ss_dssp             EEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             cEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEecC
Confidence            799999999999885543     478999999999988777755

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=1.5e-22  Score=182.83  Aligned_cols=247  Identities=15%  Similarity=0.118  Sum_probs=184.4

Q ss_pred             cCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEecccc-----cCeeeEEECCCCCEEEEEe----------
Q psy226          104 GHRSPVIKVIFHPVFSLM-ASCSEDATIRLWDYETGEYERALHGHL-----DSVQDIAFDQSGKLLVSCS----------  167 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~l-atgs~dg~v~vwd~~~~~~~~~~~~h~-----~~V~~l~~~~~g~~l~sgs----------  167 (406)
                      .+...+..++|+|||+++ ++++.++.|.+||+.+++....+..+.     ..+..++|+|+++++++++          
T Consensus        31 ~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~  110 (337)
T d1pbyb_          31 DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF  110 (337)
T ss_dssp             TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeec
Confidence            345567889999999987 577789999999999999888776543     3567899999999998876          


Q ss_pred             --CCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCC
Q psy226          168 --ADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGT  245 (406)
Q Consensus       168 --~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  245 (406)
                        .+..+.+||..+++....+..+ ..+.+++|+|++.++++++.+  +.+||..++.....+..+... ....++|++.
T Consensus       111 ~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~  186 (337)
T d1pbyb_         111 EVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWE-AETYAQPDVL  186 (337)
T ss_dssp             EECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTT-TTTBCCCBCC
T ss_pred             cccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCcc-ccceecCCcc
Confidence              3578899999999888877654 568889999999999988654  778999999888776543321 1111222221


Q ss_pred             E------------------------EEEEeCCCeEEEEeCCCcccee-EEecCCceEEEEEeCCCCCccccccccCCCCC
Q psy226          246 L------------------------LASCSNDHTARVWSLATKETKA-ELRGHDHTVECVAWAPGVASESISEAAGRPPG  300 (406)
Q Consensus       246 ~------------------------l~s~~~d~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  300 (406)
                      .                        ...+..++.+.+|+..++.... .+..+...+....+.|                
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  250 (337)
T d1pbyb_         187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP----------------  250 (337)
T ss_dssp             CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT----------------
T ss_pred             eeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecc----------------
Confidence            1                        1112234457788877665433 2344555566666665                


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc
Q psy226          301 QGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH  375 (406)
Q Consensus       301 ~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h  375 (406)
                        .+.+++++  ++.|++||+.+++.+..+. +...+.+++|+|+|++|++++.|++|+|||..+.+.+++++..
T Consensus       251 --~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         251 --AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             --TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             --cceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence              34555544  5889999999999988775 5667899999999999999999999999999999988888643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.90  E-value=2e-20  Score=171.84  Aligned_cols=279  Identities=10%  Similarity=-0.021  Sum_probs=201.1

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEE-----eCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe---------
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASC-----SEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS---------  167 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latg-----s~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs---------  167 (406)
                      ...+..|+..++++|+++.++..     +.++.|.+||..+++.+..+..+..+  .++|+|||++|++++         
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            34688899999999999988764     34567999999999999888766544  799999999998875         


Q ss_pred             -CCCcEEEEeCCCCeEEEEEecCCcce-------EEEEEecCCCEEEEEe--CCCcEEEEEcCCCeEEEEeecCCccEEE
Q psy226          168 -ADMSLKLWDMSTYQCLKTMQGHDHNV-------TGVAFLPNSDFVLSAS--RDKTIKMWEVATGYCVKTLTGHREWVRQ  237 (406)
Q Consensus       168 -~d~~i~vwd~~~~~~~~~~~~h~~~v-------~~~~~~p~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~v~~  237 (406)
                       .++.|.+||..+++.+..+..+....       ..+.|+|+++.++...  .++.+.+|+..+.......    ....+
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  169 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTC  169 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----cccee
Confidence             35789999999999888776665443       4578889988665543  4568889998876554433    33567


Q ss_pred             EEECCCCCE-EEEEeCCCeEEEEeCCCccceeEEecCCce------EEEEEeCCCCCccccccccCCCCCCCCCCEEEEE
Q psy226          238 IKVSPDGTL-LASCSNDHTARVWSLATKETKAELRGHDHT------VECVAWAPGVASESISEAAGRPPGQGGGPYLATG  310 (406)
Q Consensus       238 l~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  310 (406)
                      +.++|+|+. +++.+.|+.+.+|+............+...      .....+.                   .+..++..
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~  230 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN-------------------KSGRIVWP  230 (373)
T ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC-------------------CCceEEEe
Confidence            889999875 478889999999999877655444322211      1112222                   12345566


Q ss_pred             eCCCcEEEEECCCCeEEE--EEeCC----------CcCEEEEEEcCCCCEE----------EEEeCCCeEEEEeCCCCcc
Q psy226          311 SRDKTIKLWDVGSGSLLF--TLIGH----------DNWVRGVTFHPGGKYL----------VSCGDDKTLRVWDTANKRN  368 (406)
Q Consensus       311 ~~d~~i~lwd~~~~~~~~--~~~~h----------~~~v~~l~~s~~g~~l----------~sgs~d~~i~vwd~~~~~~  368 (406)
                      +.++.+.+|+...+....  ....+          ......++++|++..+          ++...++.|.+||..+++.
T Consensus       231 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~  310 (373)
T d2madh_         231 VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT  310 (373)
T ss_pred             cCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE
Confidence            778889999987765322  11111          1223445666665544          4456678899999999998


Q ss_pred             ceeeccccceEEEEEEeCCCC--EEEEeeCCCeEEEeecC
Q psy226          369 MKTLEAHSHFVTSLDFHRAHP--YVVTGSVDKTVKVWECR  406 (406)
Q Consensus       369 ~~~l~~h~~~v~~l~~~~~~~--~l~sgs~Dg~v~iw~~~  406 (406)
                      +..+. +...+.+++|+|||+  ++++++.|++|++||..
T Consensus       311 ~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         311 SSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             EEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            88776 456789999999998  45789999999999963

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.5e-20  Score=168.00  Aligned_cols=268  Identities=12%  Similarity=0.224  Sum_probs=183.2

Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEE--ecccccCeeeEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEE---ecCCcce
Q psy226          120 LMASCSEDATIRLWDYETGEYERA--LHGHLDSVQDIAFDQSGKLLVSCS-ADMSLKLWDMSTYQCLKTM---QGHDHNV  193 (406)
Q Consensus       120 ~latgs~dg~v~vwd~~~~~~~~~--~~~h~~~V~~l~~~~~g~~l~sgs-~d~~i~vwd~~~~~~~~~~---~~h~~~v  193 (406)
                      .+++++.|++|++|++.+......  ...|.+.|.+|+|+|||++|++++ .|+.|++|++........+   ..+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            567888999999999876432222  235778999999999999986555 5899999998754322222   2334557


Q ss_pred             EEEEEecCCCEEEEEeC-CCcEEEEEcCCCeEEE--EeecCCccEEEEEECCCCCEEEEEe-CCCeEEEEeCCCccceeE
Q psy226          194 TGVAFLPNSDFVLSASR-DKTIKMWEVATGYCVK--TLTGHREWVRQIKVSPDGTLLASCS-NDHTARVWSLATKETKAE  269 (406)
Q Consensus       194 ~~~~~~p~~~~l~s~s~-d~~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~  269 (406)
                      ..++|+|+|++|++++. +++|.+|+........  ....+...+.++.++|++++++.++ .+..+.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            78999999999988875 6789999887665433  3345667788999999999888777 456799999866543221


Q ss_pred             E------ecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEE-EEEeCCCcEEEEECCCC----eEEEEEe------C
Q psy226          270 L------RGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYL-ATGSRDKTIKLWDVGSG----SLLFTLI------G  332 (406)
Q Consensus       270 ~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~lwd~~~~----~~~~~~~------~  332 (406)
                      .      .........++|.+.                  +.++ .+....+...+|+....    .......      .
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  227 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPN------------------EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS  227 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTT------------------SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred             eeceeeeeecCCCccEEEEecc------------------ceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCC
Confidence            1      122334456677663                  3344 34445667778876432    1222221      1


Q ss_pred             CCcCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCccceeecc---ccceEEEEEEeCCCCEEEEe-eCCCeEEEeec
Q psy226          333 HDNWVRGVTFHPGGKYLVS-CGDDKTLRVWDTANKRNMKTLEA---HSHFVTSLDFHRAHPYVVTG-SVDKTVKVWEC  405 (406)
Q Consensus       333 h~~~v~~l~~s~~g~~l~s-gs~d~~i~vwd~~~~~~~~~l~~---h~~~v~~l~~~~~~~~l~sg-s~Dg~v~iw~~  405 (406)
                      .......+++++++++++. +..++.+.+|++........+..   +...+.+++|+|+|++|+++ +.++.|++|++
T Consensus       228 ~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         228 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             ccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            2345778899999997765 45678999998876544333322   33456789999999987665 56789999964

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=1.7e-20  Score=170.97  Aligned_cols=273  Identities=13%  Similarity=0.114  Sum_probs=186.5

Q ss_pred             CeEEEEEcCCCCEEEEE-----eCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEE----------eCCCcE
Q psy226          108 PVIKVIFHPVFSLMASC-----SEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSC----------SADMSL  172 (406)
Q Consensus       108 ~V~~v~~~p~~~~latg-----s~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sg----------s~d~~i  172 (406)
                      |+.-.+.+|+++.++..     ..+++|.+||..+++...++..+..  ..++|+|||++|++.          +.|+.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            44445678999988765     3466799999999999888876544  479999999988764          347899


Q ss_pred             EEEeCCCCeEEEEEecCCc-------ceEEEEEecCCCEEEEEe--CCCcEEEEEcCCCeEEEEeecCCccE-------E
Q psy226          173 KLWDMSTYQCLKTMQGHDH-------NVTGVAFLPNSDFVLSAS--RDKTIKMWEVATGYCVKTLTGHREWV-------R  236 (406)
Q Consensus       173 ~vwd~~~~~~~~~~~~h~~-------~v~~~~~~p~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~v-------~  236 (406)
                      ++||..+++.+..+..+..       ....++|+|++++++.++  .+..+.+||..++..+..+..+....       .
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence            9999999998887765432       234578999999887764  46789999999998888776543221       2


Q ss_pred             EEEECCCCCEEEEEe-CCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCc
Q psy226          237 QIKVSPDGTLLASCS-NDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT  315 (406)
Q Consensus       237 ~l~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  315 (406)
                      .+.+++++..++... .++.+.+++......     .+...+....+.+                  .+..++.++.++.
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~------------------~~~~~~~~~~~~~  217 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQ------------------KAGRLVWPTYTGK  217 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEET------------------TTTEEEEEBTTSE
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccC------------------CCCeEEEecCCCe
Confidence            234445544443322 223333333322111     1111111122221                  3557888899999


Q ss_pred             EEEEECCCCeEEE--EEeCCC----------cCEEEEEEcCCCCEEEEEeCC----------CeEEEEeCCCCccceeec
Q psy226          316 IKLWDVGSGSLLF--TLIGHD----------NWVRGVTFHPGGKYLVSCGDD----------KTLRVWDTANKRNMKTLE  373 (406)
Q Consensus       316 i~lwd~~~~~~~~--~~~~h~----------~~v~~l~~s~~g~~l~sgs~d----------~~i~vwd~~~~~~~~~l~  373 (406)
                      +.+|++..+....  ....+.          .....++++|++..++..+.+          ..|.+||..+++.+.++.
T Consensus       218 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~  297 (355)
T d2bbkh_         218 IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE  297 (355)
T ss_dssp             EEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             EEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec
Confidence            9999998775422  222221          123457899999988766543          479999999999888886


Q ss_pred             cccceEEEEEEeCCCC--EEEEeeCCCeEEEeecC
Q psy226          374 AHSHFVTSLDFHRAHP--YVVTGSVDKTVKVWECR  406 (406)
Q Consensus       374 ~h~~~v~~l~~~~~~~--~l~sgs~Dg~v~iw~~~  406 (406)
                      . ...+.+++|+|+|+  ++++++.|+.|.+||.+
T Consensus       298 ~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         298 M-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             E-EEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             C-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            4 45689999999997  46788899999999963

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.85  E-value=4.1e-18  Score=156.17  Aligned_cols=278  Identities=10%  Similarity=-0.030  Sum_probs=192.7

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcEEEEecccccCe-------eeEEECCCCCEEE
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCS----------EDATIRLWDYETGEYERALHGHLDSV-------QDIAFDQSGKLLV  164 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs----------~dg~v~vwd~~~~~~~~~~~~h~~~V-------~~l~~~~~g~~l~  164 (406)
                      +.++..+  .++|+|||++|++++          .++.|.+||..+++....+..+....       ..+.|+++++.++
T Consensus        63 ~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~  140 (373)
T d2madh_          63 VNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLL  140 (373)
T ss_pred             EeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEE
Confidence            4444443  689999999999875          46789999999999888776655433       4578889998766


Q ss_pred             EEe--CCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCE-EEEEeCCCcEEEEEcCCCeEEEEeecC------CccE
Q psy226          165 SCS--ADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDF-VLSASRDKTIKMWEVATGYCVKTLTGH------REWV  235 (406)
Q Consensus       165 sgs--~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~------~~~v  235 (406)
                      ...  .++.+.+|+..+.+....    .....++.++|+++. +++.+.|+++.+||...+........+      ....
T Consensus       141 v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (373)
T d2madh_         141 FFQFAAGPAVGLVVQGGSSDDQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLT  216 (373)
T ss_pred             EEEEcCCCceEEeeccCCeEEEE----eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCcccee
Confidence            554  456889999887665433    334667889999875 467889999999999888776655432      2233


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCccce--eEEecCCceEEEEEeCCCCCccccccccC--CCCCCCCCCEEEEEe
Q psy226          236 RQIKVSPDGTLLASCSNDHTARVWSLATKETK--AELRGHDHTVECVAWAPGVASESISEAAG--RPPGQGGGPYLATGS  311 (406)
Q Consensus       236 ~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~s~~  311 (406)
                      ..+.+++++. ++..+.++.+.+|+.......  .....+........+.|............  .......+..+++..
T Consensus       217 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  295 (373)
T d2madh_         217 QPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHA  295 (373)
T ss_pred             eeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeec
Confidence            4556666664 456668899999998765432  22222333333333333211100000000  000112345667788


Q ss_pred             CCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCE--EEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCC
Q psy226          312 RDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKY--LVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA  387 (406)
Q Consensus       312 ~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~--l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~  387 (406)
                      .++.+.+||..+++.+..+. +...+.+++|+|||+.  +++++.|++|+|||+.+++.++++..+....+.|++..+
T Consensus       296 ~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         296 AAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            88999999999999887765 5667999999999984  468899999999999999999999888777777777543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=3.5e-20  Score=167.65  Aligned_cols=249  Identities=15%  Similarity=0.068  Sum_probs=176.5

Q ss_pred             cCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEcCCCcEEEEeccc------ccCeeeEEECCCCCEEEEEe---------
Q psy226          104 GHRSPVIKVIFHPVFSLM-ASCSEDATIRLWDYETGEYERALHGH------LDSVQDIAFDQSGKLLVSCS---------  167 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~l-atgs~dg~v~vwd~~~~~~~~~~~~h------~~~V~~l~~~~~g~~l~sgs---------  167 (406)
                      .|...+.+++|+||++++ ++++.++.|++||+.+++....+...      ...+..++|+|||+++++++         
T Consensus        37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~  116 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH  116 (346)
T ss_dssp             SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeee
Confidence            455667899999999976 56678999999999999887766432      23567899999999998765         


Q ss_pred             ---CCCcEEEEeCCCCeEEEEEecC--CcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC
Q psy226          168 ---ADMSLKLWDMSTYQCLKTMQGH--DHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP  242 (406)
Q Consensus       168 ---~d~~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  242 (406)
                         .+..+.+||..+++....+..+  ...+..+.+++++..++++   +.+.+|++.++..+..+..+.. ...+.++|
T Consensus       117 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  192 (346)
T d1jmxb_         117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNW-NRKGYSAP  192 (346)
T ss_dssp             EEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTC-CCTTBCCC
T ss_pred             eccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCC-ccceEEec
Confidence               4677888988776543332222  2345556667676655542   4588999999988887764432 23334445


Q ss_pred             CCCE--------------------------EEEEeCCCeEEEEeCCCcccee-EEecCCceEEEEEeCCCCCcccccccc
Q psy226          243 DGTL--------------------------LASCSNDHTARVWSLATKETKA-ELRGHDHTVECVAWAPGVASESISEAA  295 (406)
Q Consensus       243 ~~~~--------------------------l~s~~~d~~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~  295 (406)
                      ++..                          ++++..++.+.+||+.+..... ....|...+..+.++|.          
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  262 (346)
T d1jmxb_         193 DVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK----------  262 (346)
T ss_dssp             BCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSS----------
T ss_pred             cccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCC----------
Confidence            4432                          2333445567777776655433 34456666666666653          


Q ss_pred             CCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc
Q psy226          296 GRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH  375 (406)
Q Consensus       296 ~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h  375 (406)
                              +.+++.+. ++.|++||..+++.+..+. +...+.+++|+|||++|++++.|+.|+|||..+++.+.++...
T Consensus       263 --------~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         263 --------DPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             --------CTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             --------CCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence                    34455544 4579999999999887775 4556899999999999999999999999999999999888754


Q ss_pred             c
Q psy226          376 S  376 (406)
Q Consensus       376 ~  376 (406)
                      .
T Consensus       333 ~  333 (346)
T d1jmxb_         333 G  333 (346)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=8.3e-21  Score=124.95  Aligned_cols=73  Identities=74%  Similarity=1.057  Sum_probs=67.0

Q ss_pred             CCChhhHHHHHHHHHHHHHhcChHHHHHHHHhhcCCC--hhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy226            2 VLSQRQREELNKAVADYLLSNGYLSALEGFKKDADLP--AEVEKKYSGLLEKKWTSVIRLQKKVIELESKLSEAE   74 (406)
Q Consensus         2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   74 (406)
                      +||+||++|||++|++||..+|+.+++++|+.++.++  .+..++|.++|||||++++|||+|+++||+++.+.+
T Consensus         1 iLt~rQ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkKImdLE~~~~~lq   75 (76)
T d1uuja_           1 VLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAK   75 (76)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6999999999999999999999999999999998764  566689999999999999999999999999987643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=2.3e-18  Score=156.63  Aligned_cols=254  Identities=11%  Similarity=0.034  Sum_probs=171.1

Q ss_pred             EEEEEcCCCCEEEEE----------eCCCcEEEEEcCCCcEEEEecccc-------cCeeeEEECCCCCEEEEEe--CCC
Q psy226          110 IKVIFHPVFSLMASC----------SEDATIRLWDYETGEYERALHGHL-------DSVQDIAFDQSGKLLVSCS--ADM  170 (406)
Q Consensus       110 ~~v~~~p~~~~latg----------s~dg~v~vwd~~~~~~~~~~~~h~-------~~V~~l~~~~~g~~l~sgs--~d~  170 (406)
                      ..++|+||+++|+++          +.|+.|++||..+++....+..+.       .....++|+++|++++.++  .+.
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence            368999999988764          458899999999999887765433       2346789999999888765  457


Q ss_pred             cEEEEeCCCCeEEEEEecCCcc-------eEEEEEecCCCEEEEE-eCCCcEEEEEcCCCeEEEEeecCCccEEEEEECC
Q psy226          171 SLKLWDMSTYQCLKTMQGHDHN-------VTGVAFLPNSDFVLSA-SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSP  242 (406)
Q Consensus       171 ~i~vwd~~~~~~~~~~~~h~~~-------v~~~~~~p~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  242 (406)
                      .+.+|+..+++.+..+..+...       ...+.+++++..++.. ..++.+.+++..+..     ..+...+....+.+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  204 (355)
T d2bbkh_         130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQ  204 (355)
T ss_dssp             EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEET
T ss_pred             eeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccC
Confidence            8999999999888777654422       2234455555544332 223344444433321     12334455567788


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCcccee--EEecCCceE----------EEEEeCCCCCccccccccCCCCCCCCCCEEEEE
Q psy226          243 DGTLLASCSNDHTARVWSLATKETKA--ELRGHDHTV----------ECVAWAPGVASESISEAAGRPPGQGGGPYLATG  310 (406)
Q Consensus       243 ~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~v----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  310 (406)
                      ++..++.++.++.+++|++.......  ....+....          ..++++|                  ++..++..
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~------------------d~~~~~~~  266 (355)
T d2bbkh_         205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR------------------ALDRIYLL  266 (355)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET------------------TTTEEEEE
T ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC------------------CCCeEEEE
Confidence            88899999999999999998764321  111121111          1123332                  33444443


Q ss_pred             eCC----------CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCccceeeccccce
Q psy226          311 SRD----------KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK--YLVSCGDDKTLRVWDTANKRNMKTLEAHSHF  378 (406)
Q Consensus       311 ~~d----------~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~--~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~  378 (406)
                      +.+          +.|.+||..+++.+..+.. ...+.+++|+|||+  ++++++.|+.|+|||..+++.++++..+...
T Consensus       267 ~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~  345 (355)
T d2bbkh_         267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG  345 (355)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred             eccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCC
Confidence            322          3699999999998877753 45588999999997  4567788999999999999999999876555


Q ss_pred             EEEEEEeCC
Q psy226          379 VTSLDFHRA  387 (406)
Q Consensus       379 v~~l~~~~~  387 (406)
                      -..+.+.++
T Consensus       346 p~~i~~~d~  354 (355)
T d2bbkh_         346 PQVITTADM  354 (355)
T ss_dssp             CCEEECCCC
T ss_pred             ccEEEeCCC
Confidence            555555443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.1e-16  Score=141.90  Aligned_cols=248  Identities=12%  Similarity=0.165  Sum_probs=167.0

Q ss_pred             eccCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCcEEEEec---ccccCeeeEEECCCCCEEEEEeC-CCcEEEEe
Q psy226          102 LSGHRSPVIKVIFHPVFSLMAS-CSEDATIRLWDYETGEYERALH---GHLDSVQDIAFDQSGKLLVSCSA-DMSLKLWD  176 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~lat-gs~dg~v~vwd~~~~~~~~~~~---~h~~~V~~l~~~~~g~~l~sgs~-d~~i~vwd  176 (406)
                      ...|.+.|..++|+|||++|++ +..|+.|++|++........+.   .+...+..++|+|+|++|++++. ++.|.+|+
T Consensus        32 ~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          32 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeec
Confidence            3468899999999999998855 5568999999987764333322   23456778999999999998875 67899998


Q ss_pred             CCCCeEE--EEEecCCcceEEEEEecCCCEEEEEeC-CCcEEEEEcCCCeEEEE------eecCCccEEEEEECCCCCEE
Q psy226          177 MSTYQCL--KTMQGHDHNVTGVAFLPNSDFVLSASR-DKTIKMWEVATGYCVKT------LTGHREWVRQIKVSPDGTLL  247 (406)
Q Consensus       177 ~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~s~-d~~i~iwd~~~~~~~~~------~~~~~~~v~~l~~~~~~~~l  247 (406)
                      .......  .....+...+.++.++|+++++++++. +..|.+|+.........      ..........++|++++..+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~  191 (333)
T d1ri6a_         112 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  191 (333)
T ss_dssp             EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             cccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeE
Confidence            7765433  233456667889999999998887764 55799999866432221      12234456789999999887


Q ss_pred             EEEe-CCCeEEEEeCCCcccee----EEec------CCceEEEEEeCCCCCccccccccCCCCCCCCCC-EEEEEeCCCc
Q psy226          248 ASCS-NDHTARVWSLATKETKA----ELRG------HDHTVECVAWAPGVASESISEAAGRPPGQGGGP-YLATGSRDKT  315 (406)
Q Consensus       248 ~s~~-~d~~v~vwd~~~~~~~~----~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~  315 (406)
                      +... ..+...+|+........    ....      .......+.+++                  ++. .++++..++.
T Consensus       192 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------------------d~~~~~~~~~~~~~  253 (333)
T d1ri6a_         192 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP------------------DGRHLYACDRTASL  253 (333)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT------------------TSSEEEEEETTTTE
T ss_pred             EeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec------------------ccCceeeecccCCe
Confidence            6554 56778888865432211    1110      111223334443                  344 4555566789


Q ss_pred             EEEEECCCCeEE---EEEeCCCcCEEEEEEcCCCCEEEEEe-CCCeEEEEeC--CCCc
Q psy226          316 IKLWDVGSGSLL---FTLIGHDNWVRGVTFHPGGKYLVSCG-DDKTLRVWDT--ANKR  367 (406)
Q Consensus       316 i~lwd~~~~~~~---~~~~~h~~~v~~l~~s~~g~~l~sgs-~d~~i~vwd~--~~~~  367 (406)
                      +.+|++......   .....+...+.+++|+|||++|++++ .++.|++|++  .+++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         254 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             EEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCc
Confidence            999988654322   22333456678899999999987665 5689999954  5554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=3.2e-17  Score=150.31  Aligned_cols=275  Identities=9%  Similarity=-0.047  Sum_probs=179.2

Q ss_pred             CCCCeEEEEEcCCCCEE---EEEeCCCc--EEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe----------CC
Q psy226          105 HRSPVIKVIFHPVFSLM---ASCSEDAT--IRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS----------AD  169 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~l---atgs~dg~--v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs----------~d  169 (406)
                      +.++...++..++++..   ++...+|+  |.+||..+++....+.++...  .++|+|||+.|++.+          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            33444455567777642   23445555  667799999998888776654  589999999888764          37


Q ss_pred             CcEEEEeCCCCeEEEEEecCCcc-------eEEEEEecCCCEEEEEe-CCCcEEEEEcCCCeEEEEeecCCccEEEEEEC
Q psy226          170 MSLKLWDMSTYQCLKTMQGHDHN-------VTGVAFLPNSDFVLSAS-RDKTIKMWEVATGYCVKTLTGHREWVRQIKVS  241 (406)
Q Consensus       170 ~~i~vwd~~~~~~~~~~~~h~~~-------v~~~~~~p~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~  241 (406)
                      ++|.+||..+++.+..+..+...       ...++|+|||++|++++ .++.+.+||+.+++....+..+.....   ..
T Consensus        96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~  172 (368)
T d1mdah_          96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HP  172 (368)
T ss_dssp             EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EE
T ss_pred             CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---cc
Confidence            78999999999988887654322       23589999999888776 579999999999998888766544321   11


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCccceeEEe------cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCc
Q psy226          242 PDGTLLASCSNDHTARVWSLATKETKAELR------GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKT  315 (406)
Q Consensus       242 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~  315 (406)
                      .....+++.+.||.+.++++..........      .+...+..+.+.+                  .+..+.  ...+.
T Consensus       173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~g~~~~--~~~~~  232 (368)
T d1mdah_         173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY------------------PGMLVW--AVASS  232 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT------------------TTEEEE--CBSSC
T ss_pred             CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc------------------CcEEEE--ecCCC
Confidence            123456667778888887765543322111      1111112222222                  222222  23445


Q ss_pred             EEEEECCCCeEEEEE--eCCC----------cCEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCccceeecc
Q psy226          316 IKLWDVGSGSLLFTL--IGHD----------NWVRGVTFHPGGKYLVSCGDD---------KTLRVWDTANKRNMKTLEA  374 (406)
Q Consensus       316 i~lwd~~~~~~~~~~--~~h~----------~~v~~l~~s~~g~~l~sgs~d---------~~i~vwd~~~~~~~~~l~~  374 (406)
                      +.+++...+......  ..+.          .....++++|++..++....+         ..|.+||..+++.+.++..
T Consensus       233 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~  312 (368)
T d1mdah_         233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN  312 (368)
T ss_dssp             CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred             EEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC
Confidence            666665544332211  1111          112357888998877654322         3699999999998888764


Q ss_pred             ccceEEEEEEeCCCC--EEEEeeCCCeEEEeec
Q psy226          375 HSHFVTSLDFHRAHP--YVVTGSVDKTVKVWEC  405 (406)
Q Consensus       375 h~~~v~~l~~~~~~~--~l~sgs~Dg~v~iw~~  405 (406)
                       ...+.+++|+||++  ++++++.|+.|.+||.
T Consensus       313 -~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         313 -GHDSDAIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             -EEEECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             -CCceeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence             45789999999996  3578888999999996

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=2.2e-16  Score=144.65  Aligned_cols=248  Identities=9%  Similarity=-0.028  Sum_probs=163.8

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEcCCCcEEEEeccccc-------CeeeEEECCCCCEEE
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCS----------EDATIRLWDYETGEYERALHGHLD-------SVQDIAFDQSGKLLV  164 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs----------~dg~v~vwd~~~~~~~~~~~~h~~-------~V~~l~~~~~g~~l~  164 (406)
                      +.++..+  .++|+||++.|++.+          .|++|++||..+++....+..+..       ....++|+|||++|+
T Consensus        62 ~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~  139 (368)
T d1mdah_          62 SLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLL  139 (368)
T ss_dssp             EEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEE
T ss_pred             EeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEE
Confidence            3344444  588999999888764          478899999999998887764432       234699999999998


Q ss_pred             EEe-CCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEE------eecCCccEEE
Q psy226          165 SCS-ADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKT------LTGHREWVRQ  237 (406)
Q Consensus       165 sgs-~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~------~~~~~~~v~~  237 (406)
                      ++. .++.+.+||+.+++....+..+.....   +......++..+.||++.++++........      +..+...+..
T Consensus       140 va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (368)
T d1mdah_         140 FFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA  216 (368)
T ss_dssp             EEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred             EEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceee
Confidence            776 579999999999998888776544321   112344667778888888888765433221      1233444556


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe--cCCc----------eEEEEEeCCCCCccccccccCCCCCCCCCC
Q psy226          238 IKVSPDGTLLASCSNDHTARVWSLATKETKAELR--GHDH----------TVECVAWAPGVASESISEAAGRPPGQGGGP  305 (406)
Q Consensus       238 l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~----------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (406)
                      ..+.+++..+.+.  ++.+.++++..........  .+..          ....++++|                  .+.
T Consensus       217 ~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~------------------~~~  276 (368)
T d1mdah_         217 AQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK------------------NTD  276 (368)
T ss_dssp             EEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET------------------TTT
T ss_pred             cccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC------------------CCC
Confidence            7778887766554  4556666665443221110  0000          001122222                  222


Q ss_pred             EEEEEe-CC--------CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCC-E-EEEEeCCCeEEEEeCCCCccceeecc
Q psy226          306 YLATGS-RD--------KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGK-Y-LVSCGDDKTLRVWDTANKRNMKTLEA  374 (406)
Q Consensus       306 ~l~s~~-~d--------~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~-~-l~sgs~d~~i~vwd~~~~~~~~~l~~  374 (406)
                      .++... .+        ..|.+||..+++.+..+. +...+.+++|+|||+ + +++++.|+.|+|||..+++.++++..
T Consensus       277 ~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            333222 11        358999999999887765 345688999999997 3 46777899999999999999988875


Q ss_pred             c
Q psy226          375 H  375 (406)
Q Consensus       375 h  375 (406)
                      .
T Consensus       356 g  356 (368)
T d1mdah_         356 D  356 (368)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.66  E-value=2.1e-14  Score=135.70  Aligned_cols=139  Identities=15%  Similarity=0.138  Sum_probs=109.1

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecc-----cccCeeeEEECCCCCEEEEEeC---------CCcEEEEeC
Q psy226          112 VIFHPVFSLMASCSEDATIRLWDYETGEYERALHG-----HLDSVQDIAFDQSGKLLVSCSA---------DMSLKLWDM  177 (406)
Q Consensus       112 v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~-----h~~~V~~l~~~~~g~~l~sgs~---------d~~i~vwd~  177 (406)
                      +.|.+++.++..  .|+.+.+||..+++....+..     |...|.++.|+|||++|+.++.         ++.+.+||+
T Consensus        22 ~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~   99 (470)
T d2bgra1          22 LRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (470)
T ss_dssp             CEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence            567788877764  578899999999987765544     4578999999999999998753         567899999


Q ss_pred             CCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecC------------------CccEEEEE
Q psy226          178 STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGH------------------REWVRQIK  239 (406)
Q Consensus       178 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~------------------~~~v~~l~  239 (406)
                      .+++. ..+..+...+..+.|+|||+.++.. .++.+.+|+..++...+....+                  ......+.
T Consensus       100 ~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1         100 NKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             TTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            98874 5677888899999999999999885 5678999999888765543221                  12245678


Q ss_pred             ECCCCCEEEEEeCCC
Q psy226          240 VSPDGTLLASCSNDH  254 (406)
Q Consensus       240 ~~~~~~~l~s~~~d~  254 (406)
                      |+|||+.|+....|.
T Consensus       178 wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         178 WSPNGTFLAYAQFND  192 (470)
T ss_dssp             ECTTSSEEEEEEEEC
T ss_pred             ECCCCCccceeEecC
Confidence            999999999886543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.64  E-value=9.8e-15  Score=134.02  Aligned_cols=259  Identities=12%  Similarity=0.062  Sum_probs=166.4

Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEEecc------------------------------cccCeeeEEECCCCCEEEEE-eC
Q psy226          120 LMASCSEDATIRLWDYETGEYERALHG------------------------------HLDSVQDIAFDQSGKLLVSC-SA  168 (406)
Q Consensus       120 ~latgs~dg~v~vwd~~~~~~~~~~~~------------------------------h~~~V~~l~~~~~g~~l~sg-s~  168 (406)
                      .++||+.+|.|+|||+.+++.++++.-                              |........++|||++|++. ..
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            467899999999999999988877532                              11223334457899988655 46


Q ss_pred             CCcEEEEeCCCCeEEEEEe-cCCcceEEEEEecCCC--EEEEEeCCC-----------------cEEEEEcCCCeEEEEe
Q psy226          169 DMSLKLWDMSTYQCLKTMQ-GHDHNVTGVAFLPNSD--FVLSASRDK-----------------TIKMWEVATGYCVKTL  228 (406)
Q Consensus       169 d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~--~l~s~s~d~-----------------~i~iwd~~~~~~~~~~  228 (406)
                      +..|.++|+.++++...+. .+.....+++|+|+++  +++..+.+.                 .+..+|..+......+
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            7899999999999887765 3567899999999998  444444332                 2345777777666655


Q ss_pred             ecCCccEEEEEECCCCCEEEEEeCCC-eEEEEeCCCc----------------------------------------cce
Q psy226          229 TGHREWVRQIKVSPDGTLLASCSNDH-TARVWSLATK----------------------------------------ETK  267 (406)
Q Consensus       229 ~~~~~~v~~l~~~~~~~~l~s~~~d~-~v~vwd~~~~----------------------------------------~~~  267 (406)
                      .... ....+.++|+|+++++.+.+. .+..++..+.                                        ...
T Consensus       173 ~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         173 IVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             EESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             ecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            4432 457789999999988776542 2222221111                                        111


Q ss_pred             eEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEE-EEEeCCCcEEEEECCCCe-----------EEEEEeCCCc
Q psy226          268 AELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYL-ATGSRDKTIKLWDVGSGS-----------LLFTLIGHDN  335 (406)
Q Consensus       268 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~lwd~~~~~-----------~~~~~~~h~~  335 (406)
                      ..+..... ...+..                  .++|+++ +++..+++|.+||+.+..           ++.......-
T Consensus       252 ~~IPvgks-PhGv~v------------------SPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl  312 (441)
T d1qnia2         252 RYIPVPKN-PHGLNT------------------SPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL  312 (441)
T ss_dssp             EEECCBSS-CCCEEE------------------CTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred             EEEeCCCC-ccCceE------------------CCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc
Confidence            11111111 111222                  2356665 567789999999975421           1111111111


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------ccceee-----ccccceEEEEEEeCCCCEEEEe---eCC
Q psy226          336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTANK----------RNMKTL-----EAHSHFVTSLDFHRAHPYVVTG---SVD  397 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~----------~~~~~l-----~~h~~~v~~l~~~~~~~~l~sg---s~D  397 (406)
                      .....+|+++|..+.+.+.|..|..|++...          ..+..+     .+|...+.+.+++|+|+||+++   |.|
T Consensus       313 gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~d  392 (441)
T d1qnia2         313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKD  392 (441)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGG
T ss_pred             CcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccc
Confidence            2345689999998999999999999997411          122333     4677777788899999999999   555


Q ss_pred             C
Q psy226          398 K  398 (406)
Q Consensus       398 g  398 (406)
                      +
T Consensus       393 r  393 (441)
T d1qnia2         393 R  393 (441)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.55  E-value=1e-13  Score=130.81  Aligned_cols=109  Identities=9%  Similarity=0.063  Sum_probs=85.9

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcE
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSE---------DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSL  172 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~---------dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i  172 (406)
                      +..|...|.++.||||++.|+.++.         ++.+.+||+.+++. ..+..|.+.+..+.|+|||+.||.. .++.+
T Consensus        57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l  134 (470)
T d2bgra1          57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDI  134 (470)
T ss_dssp             TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEE
T ss_pred             hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccc
Confidence            4456788999999999999998753         57889999999874 4577888999999999999999986 56789


Q ss_pred             EEEeCCCCeEEEEEecC------------------CcceEEEEEecCCCEEEEEeCCC
Q psy226          173 KLWDMSTYQCLKTMQGH------------------DHNVTGVAFLPNSDFVLSASRDK  212 (406)
Q Consensus       173 ~vwd~~~~~~~~~~~~h------------------~~~v~~~~~~p~~~~l~s~s~d~  212 (406)
                      .+|+..+++..+....+                  ......+.|+|||++|+....|.
T Consensus       135 ~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred             eEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence            99999888765543222                  12345678999999999876543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.47  E-value=7.2e-13  Score=121.46  Aligned_cols=244  Identities=12%  Similarity=0.111  Sum_probs=156.6

Q ss_pred             CCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCCCcEEEEec-ccccCeeeEEECCCCC--EEEEEeCCC----------
Q psy226          105 HRSPVIKVIFHPVFSLMAS-CSEDATIRLWDYETGEYERALH-GHLDSVQDIAFDQSGK--LLVSCSADM----------  170 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~lat-gs~dg~v~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~g~--~l~sgs~d~----------  170 (406)
                      |.-......+.|||++|+. ...+++|.++|+.+++..+.+. .+...+..++|+|+|+  +++..+.+.          
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            4445556677899998855 4578899999999999887765 3567899999999998  454444332          


Q ss_pred             -------cEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC--------------------------------
Q psy226          171 -------SLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD--------------------------------  211 (406)
Q Consensus       171 -------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d--------------------------------  211 (406)
                             .+..+|..+.+....+... .....+.|+|+|+++++.+.+                                
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~d  228 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKA  228 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHT
T ss_pred             ccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecC
Confidence                   2355788877776665543 357789999999988877643                                


Q ss_pred             ---------CcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEE-EEEeCCCeEEEEeCCCccceeEEecCCceEEEEE
Q psy226          212 ---------KTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLL-ASCSNDHTARVWSLATKETKAELRGHDHTVECVA  281 (406)
Q Consensus       212 ---------~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~  281 (406)
                               +.+.+++......+..+..... ...+.++|||+++ +++..|++|.|||+.+....  +.++.....++.
T Consensus       229 Gk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~--~~~~~~~~~~~~  305 (441)
T d1qnia2         229 GNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL--FEDKIELRDTIV  305 (441)
T ss_dssp             TCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH--TTTSSCGGGGEE
T ss_pred             CCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH--hhccCCcceEEE
Confidence                     2334444344344455544433 4678999999986 55678999999998753211  111111111121


Q ss_pred             eCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC---------C-eEEEEE-----eCCCcCEEEEEEcCCC
Q psy226          282 WAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS---------G-SLLFTL-----IGHDNWVRGVTFHPGG  346 (406)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~---------~-~~~~~~-----~~h~~~v~~l~~s~~g  346 (406)
                      ..|.......     +..++..|....+...|.+|..|++..         . ..+..+     .||...+.+.+++|+|
T Consensus       306 ~~~~~glgpl-----h~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdG  380 (441)
T d1qnia2         306 AEPELGLGPL-----HTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADG  380 (441)
T ss_dssp             ECCBCCSCEE-----EEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCC
T ss_pred             eecccccCcc-----cceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCC
Confidence            1111100000     001122466778888999999999631         1 223333     5777777788999999


Q ss_pred             CEEEEE---eCCCe
Q psy226          347 KYLVSC---GDDKT  357 (406)
Q Consensus       347 ~~l~sg---s~d~~  357 (406)
                      +||+++   |.|+.
T Consensus       381 k~l~s~~k~s~dr~  394 (441)
T d1qnia2         381 KWLVVLSKFSKDRF  394 (441)
T ss_dssp             CEEEEEESCCGGGS
T ss_pred             cEEEecCccccccC
Confidence            999999   55643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=1.9e-10  Score=99.15  Aligned_cols=235  Identities=10%  Similarity=0.052  Sum_probs=152.7

Q ss_pred             CeeeEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe
Q psy226          150 SVQDIAFDQSGKLLVSCS-ADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL  228 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs-~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~  228 (406)
                      .-.+|+++++|++.++.. ..+.+..++..+........+-.....++++.++++++++....+.+++++-.++..+...
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~   94 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF   94 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence            457899999999766554 4566777765543222111111234567899999998877777777777765555444333


Q ss_pred             ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEE
Q psy226          229 TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLA  308 (406)
Q Consensus       229 ~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  308 (406)
                      .+ ......++++++++++++-..+..+..++............-......+++.|                  .+.+++
T Consensus        95 ~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~------------------~g~~~v  155 (260)
T d1rwia_          95 DG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN------------------SGNVYV  155 (260)
T ss_dssp             CS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT------------------TCCEEE
T ss_pred             ee-eeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecC------------------CCCEee
Confidence            22 34568899999999888777777777777654332211111112223455544                  456777


Q ss_pred             EEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceee-ccccceEEEEEEeCC
Q psy226          309 TGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTL-EAHSHFVTSLDFHRA  387 (406)
Q Consensus       309 s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l-~~h~~~v~~l~~~~~  387 (406)
                      +...++.|..+|...................|+++++|+++++....+.|..++..... ...+ ...-.....|+++++
T Consensus       156 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~  234 (260)
T d1rwia_         156 TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSD  234 (260)
T ss_dssp             EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTT
T ss_pred             eccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCC
Confidence            77778889999987655443333455668899999999998888888999988765432 2222 122235689999999


Q ss_pred             CCEEEEeeCCCeEEEee
Q psy226          388 HPYVVTGSVDKTVKVWE  404 (406)
Q Consensus       388 ~~~l~sgs~Dg~v~iw~  404 (406)
                      +.++++-..+++|+.++
T Consensus       235 g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         235 RTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CCEEEEEGGGTEEEEEC
T ss_pred             CCEEEEECCCCEEEEEe
Confidence            99888877888887665

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=4.3e-10  Score=96.87  Aligned_cols=237  Identities=10%  Similarity=-0.009  Sum_probs=152.0

Q ss_pred             CeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          108 PVIKVIFHPVFSLMASC-SEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       108 ~V~~v~~~p~~~~latg-s~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      .-..|++.+++++.++. +..+.+..++..+.........-......++++++|++.++....+.+++++-.+...+...
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~   94 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF   94 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence            34689999999976654 45577777765544322222222234678999999998888777777777765555443322


Q ss_pred             ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc
Q psy226          187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET  266 (406)
Q Consensus       187 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~  266 (406)
                      .+ .....++++.++++++++-..+..+..++...................++++|+|+++++...++.|..++......
T Consensus        95 ~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~  173 (260)
T d1rwia_          95 DG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  173 (260)
T ss_dssp             CS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             ee-eeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee
Confidence            22 34578899999998877766666677776654332221112233457899999999988888889999999875443


Q ss_pred             eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCC
Q psy226          267 KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGG  346 (406)
Q Consensus       267 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g  346 (406)
                      .............+++.+                  +|.++++....+.|..++.............-....+|+++++|
T Consensus       174 ~~~~~~~~~~p~gi~~d~------------------~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g  235 (260)
T d1rwia_         174 VVLPFTDITAPWGIAVDE------------------AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR  235 (260)
T ss_dssp             EECCCSSCCSEEEEEECT------------------TCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTC
T ss_pred             eeeeccccCCCccceeee------------------eeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCC
Confidence            322222333445666654                  46677777777788888765433222112233567899999999


Q ss_pred             CEEEEEeCCCeEEEEeC
Q psy226          347 KYLVSCGDDKTLRVWDT  363 (406)
Q Consensus       347 ~~l~sgs~d~~i~vwd~  363 (406)
                      ..+++-..+++|+.++.
T Consensus       236 ~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         236 TVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CEEEEEGGGTEEEEECC
T ss_pred             CEEEEECCCCEEEEEeC
Confidence            98888777787876654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=1.4e-08  Score=88.02  Aligned_cols=232  Identities=14%  Similarity=0.215  Sum_probs=158.1

Q ss_pred             CeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecC------CcceEEEEEecCCC-EEEE-EeCCCcEEEEEcCC
Q psy226          150 SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGH------DHNVTGVAFLPNSD-FVLS-ASRDKTIKMWEVAT  221 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~p~~~-~l~s-~s~d~~i~iwd~~~  221 (406)
                      ....|+++++|+++++-.....|++||.+ ++.+..+...      ...-..+++.++.. .+++ .+.++.|..++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            45789999999988887778899999965 5666555321      11234566666544 3433 334557777775 4


Q ss_pred             CeEEEEee-cCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe--cCCceEEEEEeCCCCCccccccccCCC
Q psy226          222 GYCVKTLT-GHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR--GHDHTVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       222 ~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                      +.....+. ........+++.++|.++++....+.+.+++... +.+..+.  .+......+++.+              
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~--------------  166 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVND--------------  166 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECS--------------
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeecc--------------
Confidence            55555553 3345677899999999888888888888888643 3333332  2333444555543              


Q ss_pred             CCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEe--CCCcCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCccceeeccc
Q psy226          299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLI--GHDNWVRGVTFHPGGKYLVSCGD-DKTLRVWDTANKRNMKTLEAH  375 (406)
Q Consensus       299 ~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~--~h~~~v~~l~~s~~g~~l~sgs~-d~~i~vwd~~~~~~~~~l~~h  375 (406)
                          .+.++++....+.|++||. +|+.+.++.  +......+|+++|+|+.+++-+. ++.|.+|+. +++.+.++...
T Consensus       167 ----~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~  240 (279)
T d1q7fa_         167 ----KQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK  240 (279)
T ss_dssp             ----SSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred             ----ceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCC
Confidence                4567777788889999996 567776763  35566889999999998777543 557999984 57766666432


Q ss_pred             --cceEEEEEEeCCCCEEEEeeCCCeEEEeec
Q psy226          376 --SHFVTSLDFHRAHPYVVTGSVDKTVKVWEC  405 (406)
Q Consensus       376 --~~~v~~l~~~~~~~~l~sgs~Dg~v~iw~~  405 (406)
                        ......|++.|++.++++ +.+..|++|..
T Consensus       241 ~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~  271 (279)
T d1q7fa_         241 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRY  271 (279)
T ss_dssp             SCCSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred             CCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEe
Confidence              235789999999976654 57899999974

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.27  E-value=1.2e-08  Score=89.97  Aligned_cols=236  Identities=11%  Similarity=0.127  Sum_probs=151.5

Q ss_pred             eEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCcEEEEecccc----cCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226          109 VIKVIFHPVFSLMASCSE-------DATIRLWDYETGEYERALHGHL----DSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~-------dg~v~vwd~~~~~~~~~~~~h~----~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      .-.++|+|+|+++++...       +|+|..||..++..........    ..-..++|.++|++|+++.....|...|.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            456789999998876433       4679999998887654433221    23567999999998888887777888888


Q ss_pred             CCCeEEEEEecCC----cceEEEEEecCCCEEEEEeC---------------CCcEEEEEcCCCeEEEEeecCCccEEEE
Q psy226          178 STYQCLKTMQGHD----HNVTGVAFLPNSDFVLSASR---------------DKTIKMWEVATGYCVKTLTGHREWVRQI  238 (406)
Q Consensus       178 ~~~~~~~~~~~h~----~~v~~~~~~p~~~~l~s~s~---------------d~~i~iwd~~~~~~~~~~~~~~~~v~~l  238 (406)
                      .+...........    .....+++.|+|++.++-..               +|.|..++. .+..... ...-...+.+
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~-~~~~~~pNGi  177 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQV-DTAFQFPNGI  177 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEE-EEEESSEEEE
T ss_pred             CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEe-eCCcceeeee
Confidence            7543221111111    12567899999988776422               223333332 2333222 2223345678


Q ss_pred             EECCCCC-----EEEEEeCCCeEEEEeCCCccceeE------Eec-CCceEEEEEeCCCCCccccccccCCCCCCCCCCE
Q psy226          239 KVSPDGT-----LLASCSNDHTARVWSLATKETKAE------LRG-HDHTVECVAWAPGVASESISEAAGRPPGQGGGPY  306 (406)
Q Consensus       239 ~~~~~~~-----~l~s~~~d~~v~vwd~~~~~~~~~------~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (406)
                      +|+|++.     ++++-+..+.|..||+.....+..      +.+ .......+++.+                  +|.+
T Consensus       178 ~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~------------------~Gnl  239 (314)
T d1pjxa_         178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE------------------DNNL  239 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT------------------TCCE
T ss_pred             EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec------------------CCcE
Confidence            8988764     555667788899988754322211      111 111223344433                  4677


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEE-EEEeCCCeEEEEeCC
Q psy226          307 LATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYL-VSCGDDKTLRVWDTA  364 (406)
Q Consensus       307 l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l-~sgs~d~~i~vwd~~  364 (406)
                      .++....+.|.+||...+..+..+......+++++|.|+++.| ++.+.++.|...++.
T Consensus       240 yVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         240 LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            7777788899999988777666666666778999999999755 566678888888864

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.26  E-value=3.9e-09  Score=92.80  Aligned_cols=226  Identities=11%  Similarity=0.046  Sum_probs=149.1

Q ss_pred             CeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCC--eEEEE
Q psy226          150 SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATG--YCVKT  227 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~--~~~~~  227 (406)
                      .+..++++|||+++++...+++|..||....  ...+......+.+++|.|+|+++++...++.+..|+....  .....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            4678999999999999999999988886543  2344556678999999999999998888888888876432  22211


Q ss_pred             e-ecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecC----------CceEEEEEeCCCCCccccccccC
Q psy226          228 L-TGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGH----------DHTVECVAWAPGVASESISEAAG  296 (406)
Q Consensus       228 ~-~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~  296 (406)
                      . .......+.+++.++|+++++-+.++.+..++.........+...          ......+.+.             
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~-------------  173 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF-------------  173 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE-------------
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc-------------
Confidence            1 234456789999999999999888999988887665322211110          0011122221             


Q ss_pred             CCCCCCCCCEEEEEeCCCcEEEEECCCCeEEE--EEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-cceeec
Q psy226          297 RPPGQGGGPYLATGSRDKTIKLWDVGSGSLLF--TLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKR-NMKTLE  373 (406)
Q Consensus       297 ~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~--~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~-~~~~l~  373 (406)
                            .+.++++.+..+.|..++........  ...........++|+++|++.++...+++|..++..... .+....
T Consensus       174 ------~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~  247 (302)
T d2p4oa1         174 ------GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAE  247 (302)
T ss_dssp             ------TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGG
T ss_pred             ------CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecC
Confidence                  23455666677788888765432211  111112335679999999988888889999999865332 222333


Q ss_pred             cccceEEEEEE---eCCCCEEEEeeC
Q psy226          374 AHSHFVTSLDF---HRAHPYVVTGSV  396 (406)
Q Consensus       374 ~h~~~v~~l~~---~~~~~~l~sgs~  396 (406)
                      ..-...++++|   .+|++.|..++.
T Consensus       248 ~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         248 QGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCCCCceEEEEcCCCCCCCEEEEECC
Confidence            33345789999   667777755443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=3.1e-08  Score=84.94  Aligned_cols=234  Identities=14%  Similarity=0.182  Sum_probs=143.0

Q ss_pred             cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCC---cEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEE
Q psy226          129 TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADM---SLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFV  205 (406)
Q Consensus       129 ~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  205 (406)
                      .|.|-|...+. .+.+..+...+.+-+|||||+.||-.....   .+.+.+..++.. ..+..+........|+|+|..+
T Consensus        20 ~l~i~d~dG~~-~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCC-cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCee
Confidence            47777766444 344444567788999999999998665433   466667666554 3445567788889999999987


Q ss_pred             EEEeC-CCcEEEE--EcCCCeEEEEeecCCccEEEEEECCCCCEEEEE-eCCCe--EEEEeCCCccceeEEecCCceEEE
Q psy226          206 LSASR-DKTIKMW--EVATGYCVKTLTGHREWVRQIKVSPDGTLLASC-SNDHT--ARVWSLATKETKAELRGHDHTVEC  279 (406)
Q Consensus       206 ~s~s~-d~~i~iw--d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~~--v~vwd~~~~~~~~~~~~~~~~v~~  279 (406)
                      +..+. ++...++  ....... ..............+++++..++.. ..++.  +.+.++.... ...+..+......
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~  175 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQD  175 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEE
T ss_pred             eEeeecCCccceeecccccccc-eeeeeccccccccccccccccceecccccCCceEeeeeccccc-ceeeecccccccc
Confidence            76554 3333332  2222222 2222333334455677777655444 44554  4445554433 2334445556666


Q ss_pred             EEeCCCCCccccccccCCCCCCCCCCEEEEEeCC-Cc--EEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeC--
Q psy226          280 VAWAPGVASESISEAAGRPPGQGGGPYLATGSRD-KT--IKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGD--  354 (406)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~--i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~--  354 (406)
                      ..|+|+                  +..++..+.+ +.  +.+.|...+..  ....+........|||||++|+-.+.  
T Consensus       176 ~~~spd------------------g~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~  235 (269)
T d2hqsa1         176 ADVSSD------------------GKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQG  235 (269)
T ss_dssp             EEECTT------------------SSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEET
T ss_pred             cccccc------------------cceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCC
Confidence            778874                  4555555444 33  55556555543  33344556678899999999864442  


Q ss_pred             -CCeEEEEeCCCCccceeeccccceEEEEEEeCC
Q psy226          355 -DKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA  387 (406)
Q Consensus       355 -d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~  387 (406)
                       ...|+++++..+.. ..+....+.+...+|+|-
T Consensus       236 ~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         236 MGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             TEEEEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred             CCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence             45788999976654 456556677888999984

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.25  E-value=1.4e-08  Score=89.58  Aligned_cols=241  Identities=11%  Similarity=0.107  Sum_probs=152.7

Q ss_pred             cCeeeEEECCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEEecC----CcceEEEEEecCCCEEEEEeCCCcEEEE
Q psy226          149 DSVQDIAFDQSGKLLVSCSA-------DMSLKLWDMSTYQCLKTMQGH----DHNVTGVAFLPNSDFVLSASRDKTIKMW  217 (406)
Q Consensus       149 ~~V~~l~~~~~g~~l~sgs~-------d~~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~p~~~~l~s~s~d~~i~iw  217 (406)
                      .....++|.++|++.++...       ++.|..||..+++........    ...-..+.|.++++.++++...+.|...
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34567899999997776433       467888998877643332211    1235679999999988888877778888


Q ss_pred             EcCCCeEEEEeecCC----ccEEEEEECCCCCEEEEEeC---------------CCeEEEEeCCCccceeEEecCCceEE
Q psy226          218 EVATGYCVKTLTGHR----EWVRQIKVSPDGTLLASCSN---------------DHTARVWSLATKETKAELRGHDHTVE  278 (406)
Q Consensus       218 d~~~~~~~~~~~~~~----~~v~~l~~~~~~~~l~s~~~---------------d~~v~vwd~~~~~~~~~~~~~~~~v~  278 (406)
                      |...+..........    ...+.++++++|++.++-..               +|.|..++... + ...+........
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~-~~~~~~~~~~pN  175 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q-MIQVDTAFQFPN  175 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C-EEEEEEEESSEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-c-eeEeeCCcceee
Confidence            876553322111111    13577999999988776432               23344444321 1 112222222234


Q ss_pred             EEEeCCCCCccccccccCCCCCCCCC-CEEEEEeCCCcEEEEECCCCeEE------EEEeC-CCcCEEEEEEcCCCCEEE
Q psy226          279 CVAWAPGVASESISEAAGRPPGQGGG-PYLATGSRDKTIKLWDVGSGSLL------FTLIG-HDNWVRGVTFHPGGKYLV  350 (406)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~lwd~~~~~~~------~~~~~-h~~~v~~l~~s~~g~~l~  350 (406)
                      .++|.|+..              ... .+.++-+..+.|..||+.....+      ..+.+ +....-.+++.++|+..+
T Consensus       176 Gi~~~~d~d--------------~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyV  241 (314)
T d1pjxa_         176 GIAVRHMND--------------GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV  241 (314)
T ss_dssp             EEEEEECTT--------------SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE
T ss_pred             eeEECCCCC--------------cceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEE
Confidence            566665311              011 23445566788888887533222      12222 223456899999999988


Q ss_pred             EEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCC-EEEEeeCCCeEEEeec
Q psy226          351 SCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHP-YVVTGSVDKTVKVWEC  405 (406)
Q Consensus       351 sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~-~l~sgs~Dg~v~iw~~  405 (406)
                      +....+.|.+||...++.+..+.......++++|.|+++ +.++.+.+|.|...+.
T Consensus       242 a~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         242 ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             EEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            888889999999888877777766666789999999987 5577778888877664

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.23  E-value=1.1e-08  Score=92.38  Aligned_cols=266  Identities=10%  Similarity=0.064  Sum_probs=149.8

Q ss_pred             EEEEeC--CCcEEEE--EcCCCcEEE--E-ecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEE-ecCCc
Q psy226          121 MASCSE--DATIRLW--DYETGEYER--A-LHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST-YQCLKTM-QGHDH  191 (406)
Q Consensus       121 latgs~--dg~v~vw--d~~~~~~~~--~-~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~-~~~~~~~-~~h~~  191 (406)
                      |..|+.  ++.|.++  |.+++++..  . .......+.-|+|++++++|+++.. +.+..|.+.. +...... .....
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            445543  4456544  445555432  1 1224455678999999999988765 4577776542 2222111 11122


Q ss_pred             ceEEEEEecCCCEE--EEEe-CCCcEEEEEcCC-CeEE------------EEe----ecCCccEEEEEECCCCCEEEEEe
Q psy226          192 NVTGVAFLPNSDFV--LSAS-RDKTIKMWEVAT-GYCV------------KTL----TGHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       192 ~v~~~~~~p~~~~l--~s~s-~d~~i~iwd~~~-~~~~------------~~~----~~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                      ....+.++|+++.+  +++. ..++|..+.+.. +...            ...    ......+.++.|+|+|++++++.
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            34456777888743  3332 235555544321 1100            000    11122467899999999888776


Q ss_pred             C-CCeEEEEeCCCcccee---EEe--cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEE-EEEeCCCcEEEEECCCC
Q psy226          252 N-DHTARVWSLATKETKA---ELR--GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYL-ATGSRDKTIKLWDVGSG  324 (406)
Q Consensus       252 ~-d~~v~vwd~~~~~~~~---~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~lwd~~~~  324 (406)
                      . ...|.+|+......+.   ...  ........++|+|+                  ++++ ++...+++|.+|++..+
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pd------------------g~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT------------------GNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT------------------SSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCC------------------CceEEEeccCCCEEEEEEecCC
Confidence            4 4578888765432221   111  22345677788773                  5555 44556789999998654


Q ss_pred             eE--EEE---Ee--------------CCCcCEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCccceee------c
Q psy226          325 SL--LFT---LI--------------GHDNWVRGVTFHPGGKYLVSCGD------DKTLRVWDTANKRNMKTL------E  373 (406)
Q Consensus       325 ~~--~~~---~~--------------~h~~~v~~l~~s~~g~~l~sgs~------d~~i~vwd~~~~~~~~~l------~  373 (406)
                      ..  +..   ..              .+......+.++|+|++|+++..      ...|..|++.....+...      .
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            32  221   11              11234678899999999987632      223667776542222111      1


Q ss_pred             cccceEEEEEEeC-CCCEEEE-eeCCCeEEEeec
Q psy226          374 AHSHFVTSLDFHR-AHPYVVT-GSVDKTVKVWEC  405 (406)
Q Consensus       374 ~h~~~v~~l~~~~-~~~~l~s-gs~Dg~v~iw~~  405 (406)
                      .......+++++| +|++|+. +..++.|.+|+.
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            1223456789998 7887755 567899999974

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=5.9e-08  Score=83.97  Aligned_cols=237  Identities=13%  Similarity=0.229  Sum_probs=161.0

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEeccc------ccCeeeEEECCC-CCEEEEE-eCCCcEEEEeCCC
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGH------LDSVQDIAFDQS-GKLLVSC-SADMSLKLWDMST  179 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h------~~~V~~l~~~~~-g~~l~sg-s~d~~i~vwd~~~  179 (406)
                      .-..|++.|+++++++-.....|++||.+ |++...+...      ...-..+++..+ +..+++. +.++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            35789999999999988888999999965 6666555321      112345665554 3444433 344577777754 


Q ss_pred             CeEEEEEe-cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEe--ecCCccEEEEEECCCCCEEEEEeCCCeE
Q psy226          180 YQCLKTMQ-GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTL--TGHREWVRQIKVSPDGTLLASCSNDHTA  256 (406)
Q Consensus       180 ~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~s~~~d~~v  256 (406)
                      ++....+. .......++++.+++.++++....+.+.+++. ++..+..+  ..+......++++++++.+++....+.|
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V  180 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  180 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccce
Confidence            45555543 23455778999999998888777778888875 45555555  3355677889999999999999999999


Q ss_pred             EEEeCCCccceeEEe--cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe-CCCcEEEEECCCCeEEEEEeC-
Q psy226          257 RVWSLATKETKAELR--GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS-RDKTIKLWDVGSGSLLFTLIG-  332 (406)
Q Consensus       257 ~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~lwd~~~~~~~~~~~~-  332 (406)
                      ++||... +.+..+.  +.......+++.|                  .|.++++-. .++.|.+|+. +|+.+.++.. 
T Consensus       181 ~~~d~~G-~~~~~~g~~g~~~~P~giavD~------------------~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~  240 (279)
T d1q7fa_         181 KVFNYEG-QYLRQIGGEGITNYPIGVGINS------------------NGEILIADNHNNFNLTIFTQ-DGQLISALESK  240 (279)
T ss_dssp             EEEETTC-CEEEEESCTTTSCSEEEEEECT------------------TCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred             eeeecCC-ceeeeecccccccCCccccccc------------------CCeEEEEECCCCcEEEEECC-CCCEEEEEeCC
Confidence            9999753 3333332  2333455666655                  356665544 3457999984 6777766643 


Q ss_pred             -CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q psy226          333 -HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN  368 (406)
Q Consensus       333 -h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~  368 (406)
                       .......|++.|+|.+++ ++.+++|++|......+
T Consensus       241 ~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         241 VKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             SCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             CCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence             234688999999997655 56789999998876543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.17  E-value=1.6e-08  Score=88.75  Aligned_cols=227  Identities=10%  Similarity=0.022  Sum_probs=149.8

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC--CeEEEE
Q psy226          108 PVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST--YQCLKT  185 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~--~~~~~~  185 (406)
                      .+..++++|+|+++++...+++|..||... +. ..+......+.+++|+++|+++++...++.+..|+...  +.....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-CE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            577899999999999999999999998554 32 23444557799999999999999888888888887643  222111


Q ss_pred             E-ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeec----------CCccEEEEEECCCCCEEEEEeCCC
Q psy226          186 M-QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG----------HREWVRQIKVSPDGTLLASCSNDH  254 (406)
Q Consensus       186 ~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~l~s~~~d~  254 (406)
                      . .........+.+.++++++++-+.++.+..+|..++........          .......+.++. +.++++.+..+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence            1 12345578899999999888888889998888877653322211          112345666653 34566677888


Q ss_pred             eEEEEeCCCccceeE--EecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeE-EEEEe
Q psy226          255 TARVWSLATKETKAE--LRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSL-LFTLI  331 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~-~~~~~  331 (406)
                      .|..++.........  ..........+++.+                  +|.+.++...++.|..++...... +....
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~------------------dG~l~va~~~~~~V~~i~p~G~~~~~~~~~  247 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV------------------EGNLYGATHIYNSVVRIAPDRSTTIIAQAE  247 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT------------------TCCEEEECBTTCCEEEECTTCCEEEEECGG
T ss_pred             eEEeccccccccccccccccCCCCCcceEECC------------------CCCEEEEEcCCCcEEEECCCCCEEEEEecC
Confidence            888888765332211  111111223344443                  467777777888999997753322 22223


Q ss_pred             CCCcCEEEEEE---cCCCCEEEEEeCC
Q psy226          332 GHDNWVRGVTF---HPGGKYLVSCGDD  355 (406)
Q Consensus       332 ~h~~~v~~l~~---s~~g~~l~sgs~d  355 (406)
                      ..-...++++|   ++|++.|+.++..
T Consensus       248 ~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         248 QGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            34456899999   6788888766544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.15  E-value=2.9e-08  Score=89.59  Aligned_cols=242  Identities=11%  Similarity=0.121  Sum_probs=142.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CcEEEEe-cccccCeeeEEECCCCCEEE--EEe-CCCcEEEEeCCC
Q psy226          105 HRSPVIKVIFHPVFSLMASCSEDATIRLWDYET-GEYERAL-HGHLDSVQDIAFDQSGKLLV--SCS-ADMSLKLWDMST  179 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~-~~~~~~~-~~h~~~V~~l~~~~~g~~l~--sgs-~d~~i~vwd~~~  179 (406)
                      ...++.-++|+|++++|.++.. +.+..|.+.. +...... .........++++++++.+.  ++. ..++|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            3445667999999999988765 5677776653 3332221 11223456788899988543  332 235555544321


Q ss_pred             -------------CeE---EE-EEecCCcceEEEEEecCCCEEEEEeC-CCcEEEEEcCC-CeEE--EEee--cCCccEE
Q psy226          180 -------------YQC---LK-TMQGHDHNVTGVAFLPNSDFVLSASR-DKTIKMWEVAT-GYCV--KTLT--GHREWVR  236 (406)
Q Consensus       180 -------------~~~---~~-~~~~h~~~v~~~~~~p~~~~l~s~s~-d~~i~iwd~~~-~~~~--~~~~--~~~~~v~  236 (406)
                                   +..   .. ........+.++.|+|+|+++++++. ...|.+|+... +...  ....  ......+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence                         110   00 01112234789999999998888764 45788887643 3221  1111  2334578


Q ss_pred             EEEECCCCCEEEE-EeCCCeEEEEeCCCccceeEEec-------------------CCceEEEEEeCCCCCccccccccC
Q psy226          237 QIKVSPDGTLLAS-CSNDHTARVWSLATKETKAELRG-------------------HDHTVECVAWAPGVASESISEAAG  296 (406)
Q Consensus       237 ~l~~~~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~-------------------~~~~v~~~~~~~~~~~~~~~~~~~  296 (406)
                      .++|+|+++++.. +..+++|.+|++...........                   +......+.++|            
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp------------  264 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF------------  264 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT------------
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC------------
Confidence            8999999998754 55689999999876543221110                   011123344444            


Q ss_pred             CCCCCCCCCEEEEEeC-CC-----cEEEEECCCC-eEEE-----EEeCCCcCEEEEEEcC-CCCEEEEE-eCCCeEEEEe
Q psy226          297 RPPGQGGGPYLATGSR-DK-----TIKLWDVGSG-SLLF-----TLIGHDNWVRGVTFHP-GGKYLVSC-GDDKTLRVWD  362 (406)
Q Consensus       297 ~~~~~~~~~~l~s~~~-d~-----~i~lwd~~~~-~~~~-----~~~~h~~~v~~l~~s~-~g~~l~sg-s~d~~i~vwd  362 (406)
                            +|++|+++.+ +.     .|..|++... ....     .......+..+++++| +|++|+++ ..++.|.||+
T Consensus       265 ------dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         265 ------SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             ------TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             ------CCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence                  5777777643 22     3777776542 2211     1122345677899998 79988666 5679999998


Q ss_pred             CCC
Q psy226          363 TAN  365 (406)
Q Consensus       363 ~~~  365 (406)
                      ++.
T Consensus       339 ~~~  341 (365)
T d1jofa_         339 WKD  341 (365)
T ss_dssp             EET
T ss_pred             EeC
Confidence            754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.12  E-value=3.4e-07  Score=80.70  Aligned_cols=231  Identities=13%  Similarity=0.122  Sum_probs=149.5

Q ss_pred             cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC----CcEEEEeCCC
Q psy226          104 GHRSPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD----MSLKLWDMST  179 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d----~~i~vwd~~~  179 (406)
                      .....+..++|.+++++.++-...+.|..||..++.....+.........++++++|+++++...+    +.+...+..+
T Consensus        37 ~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          37 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            344556789999999988888889999999988877666655555678899999999988776443    3344555554


Q ss_pred             CeEEEEEecC--CcceEEEEEecCCCEEEEEeCC------CcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEE-EEE
Q psy226          180 YQCLKTMQGH--DHNVTGVAFLPNSDFVLSASRD------KTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLL-ASC  250 (406)
Q Consensus       180 ~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~  250 (406)
                      ..........  ......+++.|+|++.++....      +.+..++...+ .+..+...-...+.++|+|+++.| ++-
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEec
Confidence            4433322211  2346789999999876664321      23444444332 223332233345789999999865 555


Q ss_pred             eCCCeEEEEeCCCccc-eeEEe-------cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECC
Q psy226          251 SNDHTARVWSLATKET-KAELR-------GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVG  322 (406)
Q Consensus       251 ~~d~~v~vwd~~~~~~-~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~  322 (406)
                      +..+.|..|++..... .....       ........+++.+                  +|.+.++....+.|.+||. 
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~------------------~G~l~Va~~~~g~V~~~~p-  256 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS------------------DDNLYVAMYGQGRVLVFNK-  256 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT------------------TCCEEEEEETTTEEEEECT-
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC------------------CCCEEEEEcCCCEEEEECC-
Confidence            6788999998764321 11110       0111223344433                  5777788888999999995 


Q ss_pred             CCeEEEEEe------CCCcCEEEEEEcCCCCEEEEEeC
Q psy226          323 SGSLLFTLI------GHDNWVRGVTFHPGGKYLVSCGD  354 (406)
Q Consensus       323 ~~~~~~~~~------~h~~~v~~l~~s~~g~~l~sgs~  354 (406)
                      .|+.+..+.      ++...+++++|.|++..+++...
T Consensus       257 ~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         257 RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            688877664      34456889999998877765543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.08  E-value=3.2e-07  Score=80.88  Aligned_cols=227  Identities=8%  Similarity=0.040  Sum_probs=147.0

Q ss_pred             CeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC----CcEEEEEcCCCeEE
Q psy226          150 SVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD----KTIKMWEVATGYCV  225 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d----~~i~iwd~~~~~~~  225 (406)
                      ....++|+++|++.++-...+.|..|+..+.+.............++++.++|+++++...+    +.+...+..++...
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~  120 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  120 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence            34679999999977777788999999988776665555566678899999999877765432    33444454444433


Q ss_pred             EEeecC--CccEEEEEECCCCCEEEEEeCC------CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCC
Q psy226          226 KTLTGH--REWVRQIKVSPDGTLLASCSND------HTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGR  297 (406)
Q Consensus       226 ~~~~~~--~~~v~~l~~~~~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  297 (406)
                      ......  ....+.++++++|++.++....      +.+..++..... ...+...-.....++|+|+            
T Consensus       121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~d------------  187 (319)
T d2dg1a1         121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTD------------  187 (319)
T ss_dssp             EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTT------------
T ss_pred             eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccc------------
Confidence            333221  2346789999999977764321      234445443322 2222222233456788773            


Q ss_pred             CCCCCCCC-EEEEEeCCCcEEEEECCCC-eEE-------EEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q psy226          298 PPGQGGGP-YLATGSRDKTIKLWDVGSG-SLL-------FTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRN  368 (406)
Q Consensus       298 ~~~~~~~~-~l~s~~~d~~i~lwd~~~~-~~~-------~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~  368 (406)
                            +. +.++-+..+.|..||+... ...       ..........-.++++++|++.++....+.|.+||. .++.
T Consensus       188 ------g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~  260 (319)
T d2dg1a1         188 ------EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYP  260 (319)
T ss_dssp             ------SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCE
T ss_pred             ------cceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcE
Confidence                  44 4455567788999987532 111       111111223568999999998888889999999995 6777


Q ss_pred             ceeec------cccceEEEEEEeCCCCEEEEeeC
Q psy226          369 MKTLE------AHSHFVTSLDFHRAHPYVVTGSV  396 (406)
Q Consensus       369 ~~~l~------~h~~~v~~l~~~~~~~~l~sgs~  396 (406)
                      +.++.      ++...+++++|.+.+..+++.+.
T Consensus       261 l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         261 IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            76664      23446789999998877765543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=2e-06  Score=73.13  Aligned_cols=222  Identities=15%  Similarity=0.173  Sum_probs=136.2

Q ss_pred             eccCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCC-CcEE--EE
Q psy226          102 LSGHRSPVIKVIFHPVFSLMASCSEDA---TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSAD-MSLK--LW  175 (406)
Q Consensus       102 l~~h~~~V~~v~~~p~~~~latgs~dg---~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d-~~i~--vw  175 (406)
                      +..+..++..-+|||||+.||-.....   .+.+.+..++... .+..+........|+|+|+.++..+.. +...  .+
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~  112 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  112 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeec
Confidence            334567788899999999998654433   3666676666543 444567788889999999988876543 2222  22


Q ss_pred             eCCCCeEEEEEecCCcceEEEEEecCCCEEE-EEeCCCc--EEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeC
Q psy226          176 DMSTYQCLKTMQGHDHNVTGVAFLPNSDFVL-SASRDKT--IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSN  252 (406)
Q Consensus       176 d~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~  252 (406)
                      ....... ..............+++++..++ +...++.  |.+.++..+.. ..+..+........++|+++.++..+.
T Consensus       113 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         113 DLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             ETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             ccccccc-eeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEee
Confidence            2222222 22223344445566777776544 4444554  55556655533 333445566777889999998877665


Q ss_pred             C-CeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeC---CCcEEEEECCCCeEEE
Q psy226          253 D-HTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSR---DKTIKLWDVGSGSLLF  328 (406)
Q Consensus       253 d-~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~i~lwd~~~~~~~~  328 (406)
                      + +...+|..........+..+........|+|+                  |+.|+-.+.   ...|.++++..+.. .
T Consensus       191 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPD------------------G~~i~f~s~~~~~~~l~~~~~dg~~~-~  251 (269)
T d2hqsa1         191 NGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPN------------------GTMVIYSSSQGMGSVLNLVSTDGRFK-A  251 (269)
T ss_dssp             CSSCEEEEEEETTTCCEEECCCSSSCEEEEECTT------------------SSEEEEEEEETTEEEEEEEETTSCCE-E
T ss_pred             cCCceeeeEeecccccceEeecCccccceEECCC------------------CCEEEEEEcCCCCcEEEEEECCCCCE-E
Confidence            4 44445444333333344445555667788884                  666654443   24688999976654 4


Q ss_pred             EEeCCCcCEEEEEEcCC
Q psy226          329 TLIGHDNWVRGVTFHPG  345 (406)
Q Consensus       329 ~~~~h~~~v~~l~~s~~  345 (406)
                      .+......+...+|||-
T Consensus       252 ~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         252 RLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             ECCCSSSEEEEEEECCC
T ss_pred             EEeCCCCcEEeEEeCCC
Confidence            56666677888999983

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=6.6e-07  Score=83.08  Aligned_cols=145  Identities=14%  Similarity=0.157  Sum_probs=94.1

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccc---cCeeeEEECCCCCEEEEEe---------CCCcEEEEeCCCCe
Q psy226          114 FHPVFSLMASCSEDATIRLWDYETGEYERALHGHL---DSVQDIAFDQSGKLLVSCS---------ADMSLKLWDMSTYQ  181 (406)
Q Consensus       114 ~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~---~~V~~l~~~~~g~~l~sgs---------~d~~i~vwd~~~~~  181 (406)
                      |.+++.++.. ..+|.|.+||..+++....+..+.   -.+....|+|||++++...         ..+.+.++|+.++.
T Consensus        24 W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            4444444332 456789999999887654444332   3577888999999887764         35678899998876


Q ss_pred             EEEEEe--cCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEee---------cCCccE---------EEEEEC
Q psy226          182 CLKTMQ--GHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLT---------GHREWV---------RQIKVS  241 (406)
Q Consensus       182 ~~~~~~--~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---------~~~~~v---------~~l~~~  241 (406)
                      ......  .....+....|+|+|+.++-.. ++.|.+.+..++..++...         |..+++         ..+-||
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS  181 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC
Confidence            432211  2234456688999999887764 5678888877665544332         112211         467799


Q ss_pred             CCCCEEEEEeC-CCeEEEEe
Q psy226          242 PDGTLLASCSN-DHTARVWS  260 (406)
Q Consensus       242 ~~~~~l~s~~~-d~~v~vwd  260 (406)
                      |||+.||.... +..|..+.
T Consensus       182 PDgk~iaf~~~D~s~V~~~~  201 (465)
T d1xfda1         182 PDGTRLAYAAINDSRVPIME  201 (465)
T ss_dssp             TTSSEEEEEEEECTTSCEEE
T ss_pred             CCCCeEEEEEecccccceee
Confidence            99999988763 33344443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.8e-06  Score=77.84  Aligned_cols=161  Identities=9%  Similarity=0.040  Sum_probs=100.7

Q ss_pred             CeEEEEEcCCCCEEEEE---------eCCCcEEEEEcCCCcEEEEec--ccccCeeeEEECCCCCEEEEEeCCCcEEEEe
Q psy226          108 PVIKVIFHPVFSLMASC---------SEDATIRLWDYETGEYERALH--GHLDSVQDIAFDQSGKLLVSCSADMSLKLWD  176 (406)
Q Consensus       108 ~V~~v~~~p~~~~latg---------s~dg~v~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd  176 (406)
                      .+....||||++.++..         +..+.+.++|+.++.......  .....+....|+|+|+.||-.. ++.+.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            56777899999987765         345788999999987654332  2334566789999999988765 56788888


Q ss_pred             CCCCeEEEEEe-cCCcc-----------------eEEEEEecCCCEEEEEeCC-CcEEE---------------------
Q psy226          177 MSTYQCLKTMQ-GHDHN-----------------VTGVAFLPNSDFVLSASRD-KTIKM---------------------  216 (406)
Q Consensus       177 ~~~~~~~~~~~-~h~~~-----------------v~~~~~~p~~~~l~s~s~d-~~i~i---------------------  216 (406)
                      ..++...+... +....                 -.++.|+|||++|+....| ..|..                     
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~  220 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence            77665544332 21111                 1467899999998876532 33333                     


Q ss_pred             ------------EEcCCCeEEEEe------ecCCccEEEEEECCCCCEEEEEeC-C---CeEEEEeCCCccceeE
Q psy226          217 ------------WEVATGYCVKTL------TGHREWVRQIKVSPDGTLLASCSN-D---HTARVWSLATKETKAE  269 (406)
Q Consensus       217 ------------wd~~~~~~~~~~------~~~~~~v~~l~~~~~~~~l~s~~~-d---~~v~vwd~~~~~~~~~  269 (406)
                                  +|+.++......      ......+..+.|+|++++++.... +   ..+.++|..++.....
T Consensus       221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~  295 (465)
T d1xfda1         221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK  295 (465)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred             cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEE
Confidence                        333322211110      011224677889999886655432 2   2477788877765443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.64  E-value=0.0001  Score=63.50  Aligned_cols=220  Identities=12%  Similarity=0.142  Sum_probs=140.4

Q ss_pred             eEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeec-
Q psy226          153 DIAFDQSGK-LLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG-  230 (406)
Q Consensus       153 ~l~~~~~g~-~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-  230 (406)
                      +..|++... +..+=-..+.|..||..+++.. .+. ....+.++++.+++.++++ +.+ .+..+|..+++....... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            345665443 3334335678888998887643 222 3456888999988876665 444 588999998875443321 


Q ss_pred             ---CCccEEEEEECCCCCEEEEEeC----CCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCC
Q psy226          231 ---HREWVRQIKVSPDGTLLASCSN----DHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGG  303 (406)
Q Consensus       231 ---~~~~v~~l~~~~~~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (406)
                         ....++.+.+.|+|++.++...    .+.-.+|.+..++....... ......++|+++                 .
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d-----------------~  159 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPD-----------------G  159 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTT-----------------S
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCC-----------------C
Confidence               1235788999999997776543    23445666555443332222 223456677763                 2


Q ss_pred             CCEEEEEeCCCcEEEEECCC------C-e-EEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc
Q psy226          304 GPYLATGSRDKTIKLWDVGS------G-S-LLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH  375 (406)
Q Consensus       304 ~~~l~s~~~d~~i~lwd~~~------~-~-~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h  375 (406)
                      ..++++-+..+.|..|++..      + . ....+.+.......++++++|++.++.-..+.|..||. +++.+..+..-
T Consensus       160 ~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP  238 (295)
T d2ghsa1         160 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP  238 (295)
T ss_dssp             CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred             ceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCC
Confidence            23456666778888887632      1 1 12233344556889999999998888778889999995 67778877655


Q ss_pred             cceEEEEEEe-CCCCEE-EEee
Q psy226          376 SHFVTSLDFH-RAHPYV-VTGS  395 (406)
Q Consensus       376 ~~~v~~l~~~-~~~~~l-~sgs  395 (406)
                      ...+++++|- ++.+.| +|..
T Consensus       239 ~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         239 GKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             CSBEEEEEEESTTSCEEEEEEB
T ss_pred             CCceEEEEEeCCCCCEEEEEEC
Confidence            5679999996 565544 4433

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.63  E-value=0.00011  Score=63.32  Aligned_cols=218  Identities=14%  Similarity=0.077  Sum_probs=141.2

Q ss_pred             EEEEcCC-CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec-
Q psy226          111 KVIFHPV-FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQG-  188 (406)
Q Consensus       111 ~v~~~p~-~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~-  188 (406)
                      ...|++. +.+..+--..+.|.-||..+++....  .....+.++++.++|.++++ +.+ -+.++|..+++....... 
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~--~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVH--ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE--ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence            3457764 55666666778999999998865422  12346788999888877665 455 488999998875433221 


Q ss_pred             ---CCcceEEEEEecCCCEEEEEeC----CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEE-EEEeCCCeEEEEe
Q psy226          189 ---HDHNVTGVAFLPNSDFVLSASR----DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLL-ASCSNDHTARVWS  260 (406)
Q Consensus       189 ---h~~~v~~~~~~p~~~~l~s~s~----d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~d~~v~vwd  260 (406)
                         ....+..+.+.|+|++.++...    .+.-.+|.+..+........ -...+.++++++++.+ ++-+..+.|..++
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEee
Confidence               1235788999999997766443    23456777767765444433 3345789999999865 5556788899888


Q ss_pred             CCCccce-----e---EEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy226          261 LATKETK-----A---ELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       261 ~~~~~~~-----~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~  332 (406)
                      +......     .   .+.+.......++...                  +|.+.++....+.|..||. .|+.+..+.-
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~------------------~GnlWva~~~~g~V~~~dp-~G~~~~~i~l  237 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA------------------EGHIWNARWGEGAVDRYDT-DGNHIARYEV  237 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEECT------------------TSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred             ecccccccccceEEEeccCcccccccceEEcC------------------CCCEEeeeeCCCceEEecC-CCcEeeEecC
Confidence            7432111     1   1112223344444433                  4666666667788999995 6888877765


Q ss_pred             CCcCEEEEEEc-CCCCEEEEE
Q psy226          333 HDNWVRGVTFH-PGGKYLVSC  352 (406)
Q Consensus       333 h~~~v~~l~~s-~~g~~l~sg  352 (406)
                      ....+++++|- |+.+.|+..
T Consensus       238 P~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         238 PGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             SCSBEEEEEEESTTSCEEEEE
T ss_pred             CCCceEEEEEeCCCCCEEEEE
Confidence            55679999995 676666543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.54  E-value=1.9e-05  Score=67.14  Aligned_cols=95  Identities=12%  Similarity=0.193  Sum_probs=65.1

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeC-C-----CcEEEEeCCCCeEEE
Q psy226          113 IFHPV--FSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSA-D-----MSLKLWDMSTYQCLK  184 (406)
Q Consensus       113 ~~~p~--~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~-d-----~~i~vwd~~~~~~~~  184 (406)
                      ..+|+  |+.+|-.+ +|.|.+.|+.+++.. .+..+...+...+|||||+.|+-... +     ..|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  88777554 456888899988854 45556677889999999998885432 2     236677777776543


Q ss_pred             EEe------cCCcceEEEEEecCCCEEEEEe
Q psy226          185 TMQ------GHDHNVTGVAFLPNSDFVLSAS  209 (406)
Q Consensus       185 ~~~------~h~~~v~~~~~~p~~~~l~s~s  209 (406)
                      ...      ..........|+|+++.|+...
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            211      1223456788999999887653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.33  E-value=7.2e-05  Score=63.33  Aligned_cols=95  Identities=14%  Similarity=0.226  Sum_probs=65.4

Q ss_pred             EECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeC-CC-----cEEEEEcCCCeEEE
Q psy226          155 AFDQS--GKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASR-DK-----TIKMWEVATGYCVK  226 (406)
Q Consensus       155 ~~~~~--g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-d~-----~i~iwd~~~~~~~~  226 (406)
                      ..+|+  |+.++-.+ ++.|.+.|+.+++. +.+..+...+...+|+|||+.|+..+. ++     .|.+++..++...+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            45788  88887654 45688889988775 456667778899999999998875432 22     36777777775543


Q ss_pred             Eee------cCCccEEEEEECCCCCEEEEEe
Q psy226          227 TLT------GHREWVRQIKVSPDGTLLASCS  251 (406)
Q Consensus       227 ~~~------~~~~~v~~l~~~~~~~~l~s~~  251 (406)
                      ...      ..........|+|+|+.++...
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            211      1123456788999999888754

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=0.0016  Score=54.61  Aligned_cols=222  Identities=15%  Similarity=0.078  Sum_probs=136.7

Q ss_pred             EeccCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEE-eCCCcEEEEeCC
Q psy226          101 ALSGHRSPVIKVIFHPVFSLMASC-SEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSC-SADMSLKLWDMS  178 (406)
Q Consensus       101 ~l~~h~~~V~~v~~~p~~~~latg-s~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sg-s~d~~i~vwd~~  178 (406)
                      .+..+...+.+++|++..+.|.-. ..++.|+..++.++.....+......+.+++++.-+..|..+ ...+.|.+.++.
T Consensus        30 ~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d  109 (263)
T d1npea_          30 FLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD  109 (263)
T ss_dssp             EEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC
Confidence            344455568889999887766644 566789888888776655555545678899998766666654 456789999987


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEEEEEeCC-CcEEEE--EcCCCeEEEEeecCCccEEEEEECCCCCEE-EEEeCCC
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD-KTIKMW--EVATGYCVKTLTGHREWVRQIKVSPDGTLL-ASCSNDH  254 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d-~~i~iw--d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~d~  254 (406)
                      ...+...+...-.....+++.|...+++..... +.-+|+  ++............-.....+++++.++.| ++-...+
T Consensus       110 g~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~  189 (263)
T d1npea_         110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (263)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCC
Confidence            654433333334568899999988877654332 233344  443332233333334566889999877766 4445678


Q ss_pred             eEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCC-
Q psy226          255 TARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGH-  333 (406)
Q Consensus       255 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h-  333 (406)
                      .|...++........+.+...+ ..++..                   ++.+..+-...+.|...|..+++.+..+..+ 
T Consensus       190 ~I~~~~~~g~~~~~v~~~~~~P-~~lav~-------------------~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~  249 (263)
T d1npea_         190 RAECLNPAQPGRRKVLEGLQYP-FAVTSY-------------------GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK  249 (263)
T ss_dssp             EEEEEETTEEEEEEEEECCCSE-EEEEEE-------------------TTEEEEEETTTTEEEEEETTTTEEEEEECCSS
T ss_pred             EEEEEECCCCCeEEEECCCCCc-EEEEEE-------------------CCEEEEEECCCCEEEEEECCCCccceEECCCC
Confidence            8999988765444344433333 234432                   1333444445677888888888776655422 


Q ss_pred             CcCEEEEEE
Q psy226          334 DNWVRGVTF  342 (406)
Q Consensus       334 ~~~v~~l~~  342 (406)
                      .....++++
T Consensus       250 ~~~~~gi~v  258 (263)
T d1npea_         250 QTRLYGITI  258 (263)
T ss_dssp             CCCCCCEEE
T ss_pred             CCCcceEEE
Confidence            233334444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.95  E-value=0.003  Score=55.75  Aligned_cols=157  Identities=12%  Similarity=0.098  Sum_probs=94.3

Q ss_pred             CeEEEEEcCCCCEEEEEeCCC-----------cEEEEEcCCCcEEEE---ecccccCeeeEEECCCCCEEEEEeCC-CcE
Q psy226          108 PVIKVIFHPVFSLMASCSEDA-----------TIRLWDYETGEYERA---LHGHLDSVQDIAFDQSGKLLVSCSAD-MSL  172 (406)
Q Consensus       108 ~V~~v~~~p~~~~latgs~dg-----------~v~vwd~~~~~~~~~---~~~h~~~V~~l~~~~~g~~l~sgs~d-~~i  172 (406)
                      ++...+...++++++.|+.+.           .+.+||..++.....   ...|.......++.++|.+++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            444455667888888887532           377999998765322   12233334567788999999988765 589


Q ss_pred             EEEeCCCCeEEEEEecC-CcceEEEEEecCCCEEEEEeCC------CcEEEEEcCCCeEEEEeec---------CCc---
Q psy226          173 KLWDMSTYQCLKTMQGH-DHNVTGVAFLPNSDFVLSASRD------KTIKMWEVATGYCVKTLTG---------HRE---  233 (406)
Q Consensus       173 ~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~---------~~~---  233 (406)
                      .+||..+......-... ...-.+++..+++.+++.|+.+      ..+.+||..+..-...-..         +..   
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  180 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  180 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence            99998876543211111 1123456677899988888753      3688999887653221100         000   


Q ss_pred             --cEEEEEECCCCCEEEEEeCCCeEEEEeCCCc
Q psy226          234 --WVRQIKVSPDGTLLASCSNDHTARVWSLATK  264 (406)
Q Consensus       234 --~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~  264 (406)
                        .-..+..-++|+.++.++.++.+.+++..+.
T Consensus       181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             ccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence              0011223346666777766666667666543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=0.012  Score=49.12  Aligned_cols=225  Identities=12%  Similarity=0.026  Sum_probs=132.0

Q ss_pred             ecccccCeeeEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEE-eCCCcEEEEEcCC
Q psy226          144 LHGHLDSVQDIAFDQSGKLLVSCS-ADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSA-SRDKTIKMWEVAT  221 (406)
Q Consensus       144 ~~~h~~~V~~l~~~~~g~~l~sgs-~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~-s~d~~i~iwd~~~  221 (406)
                      +..+...+.+|+|++..+.|.-.. .++.|+..++........+......+.++++..-++.|..+ ...+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            334445678899998877777654 55778888887654443443333568899998767666544 4567899999876


Q ss_pred             CeEEEEeecCCccEEEEEECCCCCEEE-EEeCCCe--EEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCC
Q psy226          222 GYCVKTLTGHREWVRQIKVSPDGTLLA-SCSNDHT--ARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       222 ~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                      ..+...+.........++++|...++. +-...+.  |.--++............-.....+++.+.             
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~-------------  177 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAF-------------  177 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETT-------------
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeec-------------
Confidence            554433444446688999998766554 4322233  444455443333222222233455665542             


Q ss_pred             CCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc-cc
Q psy226          299 PGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH-SH  377 (406)
Q Consensus       299 ~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h-~~  377 (406)
                          .+.+..+-...+.|...|+........+.+.. ...+|++. ++....+-...+.|...|..+++.+..+..+ ..
T Consensus       178 ----~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~  251 (263)
T d1npea_         178 ----SSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT  251 (263)
T ss_dssp             ----TTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCC
T ss_pred             ----CcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCC
Confidence                22333444556788888886544433334332 34578775 3333344456788999999888776665322 22


Q ss_pred             eEEEEEEeCC
Q psy226          378 FVTSLDFHRA  387 (406)
Q Consensus       378 ~v~~l~~~~~  387 (406)
                      ....++..++
T Consensus       252 ~~~gi~v~~~  261 (263)
T d1npea_         252 RLYGITIALS  261 (263)
T ss_dssp             CCCCEEEECS
T ss_pred             CcceEEEeCC
Confidence            3345555443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.64  E-value=0.0093  Score=56.10  Aligned_cols=112  Identities=16%  Similarity=0.126  Sum_probs=69.2

Q ss_pred             CCEEEEEeCCCcEEEEEc-CCCcEEEEecccc----------cCe-eeEEECCC----CCEEEEEeCCCcEEEEeCCCCe
Q psy226          118 FSLMASCSEDATIRLWDY-ETGEYERALHGHL----------DSV-QDIAFDQS----GKLLVSCSADMSLKLWDMSTYQ  181 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~-~~~~~~~~~~~h~----------~~V-~~l~~~~~----g~~l~sgs~d~~i~vwd~~~~~  181 (406)
                      +.++++++.++.|...|. .+|+.+-.+....          +.+ +.+++.++    +.+++.++.|+.+.-.|..+++
T Consensus        63 g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~  142 (596)
T d1w6sa_          63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE  142 (596)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred             CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCc
Confidence            444555566677888886 5788776653111          011 34555332    3478889999999999999999


Q ss_pred             EEEEEecCCcce-EEEEEec--CCCEEEEEeC------CCcEEEEEcCCCeEEEEee
Q psy226          182 CLKTMQGHDHNV-TGVAFLP--NSDFVLSASR------DKTIKMWEVATGYCVKTLT  229 (406)
Q Consensus       182 ~~~~~~~h~~~v-~~~~~~p--~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~  229 (406)
                      .+..+....... ..+.-.|  -++.++.++.      .|.|+-+|..+|+.+-.+.
T Consensus       143 ~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         143 TVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             EEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            887764321110 0011011  1345666543      4889999999999887764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.57  E-value=0.0078  Score=56.34  Aligned_cols=203  Identities=15%  Similarity=0.098  Sum_probs=110.6

Q ss_pred             CCEEEEEeCCCcEEEEEc-CCCcEEEEeccccc----Ce-------eeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q psy226          118 FSLMASCSEDATIRLWDY-ETGEYERALHGHLD----SV-------QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKT  185 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~-~~~~~~~~~~~h~~----~V-------~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~  185 (406)
                      +.++++.+.++.|...|. ++|+.+-++.....    ..       +.+++.  +..++.++.|+.+.-.|.++++.+..
T Consensus        63 g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~  140 (571)
T d2ad6a1          63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhcc
Confidence            444444445788888897 47888776531110    01       223443  34677889999999999999988765


Q ss_pred             EecCCc----ceEEEEEecCCCEEEEEeC------CCcEEEEEcCCCeEEEEeecCC-----------------------
Q psy226          186 MQGHDH----NVTGVAFLPNSDFVLSASR------DKTIKMWEVATGYCVKTLTGHR-----------------------  232 (406)
Q Consensus       186 ~~~h~~----~v~~~~~~p~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~~~-----------------------  232 (406)
                      ......    .+++.-...+ +.++.+..      +|.|+-+|+.+|+.+..+....                       
T Consensus       141 ~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  219 (571)
T d2ad6a1         141 VEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL  219 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred             ccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccc
Confidence            532211    1111111113 34444442      6789999999999887654221                       


Q ss_pred             --------------ccE-EEEEECCCCCEEEEEeC----------------CCeEEEEeCCCccceeEEecCCceEEEEE
Q psy226          233 --------------EWV-RQIKVSPDGTLLASCSN----------------DHTARVWSLATKETKAELRGHDHTVECVA  281 (406)
Q Consensus       233 --------------~~v-~~l~~~~~~~~l~s~~~----------------d~~v~vwd~~~~~~~~~~~~~~~~v~~~~  281 (406)
                                    ..+ ...+++++..++..+..                ...+...|.++++.+-.++...+.+... 
T Consensus       220 ~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~-  298 (571)
T d2ad6a1         220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF-  298 (571)
T ss_dssp             HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC-
T ss_pred             cccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccc-
Confidence                          001 23456666666655544                2356666777776655444322221110 


Q ss_pred             eCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q psy226          282 WAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFT  329 (406)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~  329 (406)
                         +.....+....  ......-..++.++.+|.+.++|..+|+.+..
T Consensus       299 ---D~~~~~~l~~~--~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         299 ---AGVNQMVLTDQ--PVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             ---CCCCCCEEEEE--EETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ---ccccccceeee--eccCccccceeeccccceEEEEecCCCcEeee
Confidence               00000000000  00000113567888999999999999988753

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.018  Score=47.91  Aligned_cols=228  Identities=10%  Similarity=0.001  Sum_probs=135.3

Q ss_pred             cEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEe-CCCcEEEEeCCCCe----EEEEEecCCcceEEEEEecCCC
Q psy226          129 TIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCS-ADMSLKLWDMSTYQ----CLKTMQGHDHNVTGVAFLPNSD  203 (406)
Q Consensus       129 ~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs-~d~~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~p~~~  203 (406)
                      .|+-.++.+......+. ....+.+++|++..+.|.-.. .++.|.-.++....    ....+......+.++++.+.++
T Consensus        11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            47778887766554444 445677899998888777654 45667666664311    1112222234567899987666


Q ss_pred             EEEEE-eCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEE-EEEe-CCCeEEEEeCCCccceeEEecCCceEEEE
Q psy226          204 FVLSA-SRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLL-ASCS-NDHTARVWSLATKETKAELRGHDHTVECV  280 (406)
Q Consensus       204 ~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~v~~~  280 (406)
                      .|..+ ...+.|.+.++........+.........++++|...++ ++-. ..+.|.-.++............-.....+
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl  169 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  169 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEE
Confidence            65554 456789999988766655555556678889999855444 4432 33456666665443333332222344566


Q ss_pred             EeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEE--eCCCcCEEEEEEcCCCCEEEEEeCCCeE
Q psy226          281 AWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTL--IGHDNWVRGVTFHPGGKYLVSCGDDKTL  358 (406)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~--~~h~~~v~~l~~s~~g~~l~sgs~d~~i  358 (406)
                      ++.+.                 .+.+..+-...+.|...|+........+  ........+|++. .+....+-..++.|
T Consensus       170 ~iD~~-----------------~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I  231 (266)
T d1ijqa1         170 TLDLL-----------------SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI  231 (266)
T ss_dssp             EEETT-----------------TTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             Eeecc-----------------ccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeE
Confidence            66552                 2334444456678888888554332222  2223446678776 33444454577889


Q ss_pred             EEEeCCCCccceeeccc
Q psy226          359 RVWDTANKRNMKTLEAH  375 (406)
Q Consensus       359 ~vwd~~~~~~~~~l~~h  375 (406)
                      +..+..++.....+...
T Consensus       232 ~~~~~~~g~~~~~~~~~  248 (266)
T d1ijqa1         232 FSANRLTGSDVNLLAEN  248 (266)
T ss_dssp             EEEETTTCCCCEEEECS
T ss_pred             EEEECCCCcceEEEEcC
Confidence            88888887766666443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.51  E-value=0.027  Score=49.58  Aligned_cols=240  Identities=14%  Similarity=0.117  Sum_probs=133.2

Q ss_pred             EEEEEeCCCcEEEEEcCCCcEEEEecccc----------c-----------------------------Cee--eEEECC
Q psy226          120 LMASCSEDATIRLWDYETGEYERALHGHL----------D-----------------------------SVQ--DIAFDQ  158 (406)
Q Consensus       120 ~latgs~dg~v~vwd~~~~~~~~~~~~h~----------~-----------------------------~V~--~l~~~~  158 (406)
                      .+.||+..|.|+|+-+.+++.++.+.-.+          .                             ...  .+.+..
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~Td   94 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE   94 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEET
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccC
Confidence            45688999999999999988776652110          0                             000  233432


Q ss_pred             ---CCCEEEEEe-CCCcEEEEeCCCCeEEEEEecC-CcceEEEEEec--CCCEEEEEeCCC------------------c
Q psy226          159 ---SGKLLVSCS-ADMSLKLWDMSTYQCLKTMQGH-DHNVTGVAFLP--NSDFVLSASRDK------------------T  213 (406)
Q Consensus       159 ---~g~~l~sgs-~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p--~~~~l~s~s~d~------------------~  213 (406)
                         ||++|++.. .+..|-+-|+.+.++.+.+... ...+..+...+  +..|++.++.+.                  .
T Consensus        95 GtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          95 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             CccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence               678777665 5788999999999987655432 34566666654  455777766532                  3


Q ss_pred             EEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCC---------------eEEEEeCCCccc------eeEEec
Q psy226          214 IKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDH---------------TARVWSLATKET------KAELRG  272 (406)
Q Consensus       214 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~---------------~v~vwd~~~~~~------~~~~~~  272 (406)
                      +.+.|..+.+....+.-. .....+.++++|+++++.+.+.               .+.++++.....      -..+.+
T Consensus       175 ~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing  253 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  253 (459)
T ss_dssp             EEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence            567888887766554432 2355688999999988876431               233444321100      000100


Q ss_pred             CCceEEEEEeCCCCCcccc--ccccCCC---CCCCCCCEEEEEe-CCCcEEEEECCCCe-----------EEEEEeCCCc
Q psy226          273 HDHTVECVAWAPGVASESI--SEAAGRP---PGQGGGPYLATGS-RDKTIKLWDVGSGS-----------LLFTLIGHDN  335 (406)
Q Consensus       273 ~~~~v~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~l~s~~-~d~~i~lwd~~~~~-----------~~~~~~~h~~  335 (406)
                          +.-+.-........+  -.....|   ...++|+++++++ .+.++.++|+++-.           .+..-....-
T Consensus       254 ----V~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elgl  329 (459)
T d1fwxa2         254 ----VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL  329 (459)
T ss_dssp             ----EEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCS
T ss_pred             ----ceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCc
Confidence                000000000000000  0000011   1123566665554 68899999985311           1111111122


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q psy226          336 WVRGVTFHPGGKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs~d~~i~vwd~~  364 (406)
                      .-...+|+..|.-..|---|..|--|++.
T Consensus       330 gPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         330 GPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             CccccccCCCceEEEEeeccceEEEEecc
Confidence            24456888888666666789999999974

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.51  E-value=0.0044  Score=54.63  Aligned_cols=146  Identities=8%  Similarity=0.078  Sum_probs=93.5

Q ss_pred             CCCCEEEEEe-CCCcEEEEEcCCCcEEEEecc-cccCeeeEEECC--CCCEEEEEeCCC------------------cEE
Q psy226          116 PVFSLMASCS-EDATIRLWDYETGEYERALHG-HLDSVQDIAFDQ--SGKLLVSCSADM------------------SLK  173 (406)
Q Consensus       116 p~~~~latgs-~dg~v~vwd~~~~~~~~~~~~-h~~~V~~l~~~~--~g~~l~sgs~d~------------------~i~  173 (406)
                      +||++|+... .+++|.+-|+.+.+..+.+.. -...+..+...+  +..+++.++.+.                  .+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            4788777654 688999999999987765543 233456666544  456777766532                  366


Q ss_pred             EEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCC---------------cEEEEEc-------------------
Q psy226          174 LWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDK---------------TIKMWEV-------------------  219 (406)
Q Consensus       174 vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~---------------~i~iwd~-------------------  219 (406)
                      ++|..+.+....... ......+.++|+|+++++.+.+.               .+.+++.                   
T Consensus       177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            788888877655543 33566789999999988876431               1233332                   


Q ss_pred             ----CCC---eEEEEeecCCccEEEEEECCCCCEEEEEe-CCCeEEEEeCCC
Q psy226          220 ----ATG---YCVKTLTGHREWVRQIKVSPDGTLLASCS-NDHTARVWSLAT  263 (406)
Q Consensus       220 ----~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~v~vwd~~~  263 (406)
                          +..   ..+..+. -......+.++|||+++++++ .+.++.|+|+++
T Consensus       256 VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             EEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             eecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                210   0111111 112235688999999986655 699999999864

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.36  E-value=0.012  Score=54.82  Aligned_cols=109  Identities=14%  Similarity=0.101  Sum_probs=68.4

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEeccccc----------Ce-eeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHGHLD----------SV-QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~h~~----------~V-~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      ..|..++.++.|.-.|..+|+.+-.+.....          .+ ..++.  .+..++.+..|+.+.-.|..+++.+....
T Consensus        67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~  144 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence            4666777889999999999998876532111          01 11222  14578888999999999999999887665


Q ss_pred             cCCcce-EEEEEec--CCCEEEEEeC------CCcEEEEEcCCCeEEEEee
Q psy226          188 GHDHNV-TGVAFLP--NSDFVLSASR------DKTIKMWEVATGYCVKTLT  229 (406)
Q Consensus       188 ~h~~~v-~~~~~~p--~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~  229 (406)
                      ...... ..+.-.|  .+..++.++.      .|.|.-+|.++|+.+-.+.
T Consensus       145 ~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeee
Confidence            432110 0010011  1234444432      3679999999999887764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.34  E-value=0.062  Score=49.98  Aligned_cols=149  Identities=11%  Similarity=0.053  Sum_probs=91.0

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEeccc---c-cCeeeEEECCCCCEEEEEeC------CCcEEEEeCCCCeEEEEEec
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHGH---L-DSVQDIAFDQSGKLLVSCSA------DMSLKLWDMSTYQCLKTMQG  188 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~h---~-~~V~~l~~~~~g~~l~sgs~------d~~i~vwd~~~~~~~~~~~~  188 (406)
                      ..++.++.||.+.-.|.++|+......-.   . ..+++--.-.++ .++.+..      +|.|+-+|+.+++.+.....
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            45777888999999999999876554321   1 112211111133 4444442      67899999999998876542


Q ss_pred             CC-------------------------------------cce-EEEEEecCCCEEEEEeC----------------CCcE
Q psy226          189 HD-------------------------------------HNV-TGVAFLPNSDFVLSASR----------------DKTI  214 (406)
Q Consensus       189 h~-------------------------------------~~v-~~~~~~p~~~~l~s~s~----------------d~~i  214 (406)
                      ..                                     ..+ ...++.|....++.+..                ...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence            21                                     112 23456676666665443                2457


Q ss_pred             EEEEcCCCeEEEEeecCCccE---------EEEEECCCCC---EEEEEeCCCeEEEEeCCCcccee
Q psy226          215 KMWEVATGYCVKTLTGHREWV---------RQIKVSPDGT---LLASCSNDHTARVWSLATKETKA  268 (406)
Q Consensus       215 ~iwd~~~~~~~~~~~~~~~~v---------~~l~~~~~~~---~l~s~~~d~~v~vwd~~~~~~~~  268 (406)
                      .-.|.++|+.+..++.....+         ....+..+++   .++.++.+|.+.++|..+++.+.
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEee
Confidence            778999999887776432111         1112222443   46778899999999998887653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.28  E-value=0.022  Score=53.16  Aligned_cols=109  Identities=15%  Similarity=0.059  Sum_probs=68.2

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEecccc----------cCe-eeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEe
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHGHL----------DSV-QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~h~----------~~V-~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~  187 (406)
                      ..|..++.++.|.-+|..+|+.+-.+....          ..+ ..+.+.  +..++.++.|+.+.-.|..+++.+....
T Consensus        78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~  155 (573)
T d1kb0a2          78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN  155 (573)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence            466777888999999999999887654211          011 122232  3467778889999989999998876554


Q ss_pred             cCCcce--EEEEEec--CCCEEEEEeC------CCcEEEEEcCCCeEEEEee
Q psy226          188 GHDHNV--TGVAFLP--NSDFVLSASR------DKTIKMWEVATGYCVKTLT  229 (406)
Q Consensus       188 ~h~~~v--~~~~~~p--~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~  229 (406)
                      ......  ..+.-.|  -++.+++++.      .|.|+-+|..+|+.+..+.
T Consensus       156 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeee
Confidence            321110  0000011  1344555543      4679999999999887753

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.19  E-value=0.071  Score=47.60  Aligned_cols=244  Identities=15%  Similarity=0.113  Sum_probs=126.2

Q ss_pred             cCCCCeEEEEEcCCCCEEEE-EeCCC----cEEEEEcCCCcEEEE-ecccccCeeeEEECCCCCEEEEEeCC--------
Q psy226          104 GHRSPVIKVIFHPVFSLMAS-CSEDA----TIRLWDYETGEYERA-LHGHLDSVQDIAFDQSGKLLVSCSAD--------  169 (406)
Q Consensus       104 ~h~~~V~~v~~~p~~~~lat-gs~dg----~v~vwd~~~~~~~~~-~~~h~~~V~~l~~~~~g~~l~sgs~d--------  169 (406)
                      ++.-.+..+.++|+++++|- -+.+|    .+++.|+.+++.+.. +.  ......++|.++++.|+-...|        
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCCCEEEEEEeccccCcccc
Confidence            33334556788999998883 33344    699999999987642 22  1123578999999977654332        


Q ss_pred             --------CcEEEEeCCCCeE--EEEEecCC--cceEEEEEecCCCEEEEEeC---CCcEEEE--EcCCCe--------E
Q psy226          170 --------MSLKLWDMSTYQC--LKTMQGHD--HNVTGVAFLPNSDFVLSASR---DKTIKMW--EVATGY--------C  224 (406)
Q Consensus       170 --------~~i~vwd~~~~~~--~~~~~~h~--~~v~~~~~~p~~~~l~s~s~---d~~i~iw--d~~~~~--------~  224 (406)
                              ..|..+.+.+...  ...+....  ..+..+..++++++++....   +....+|  |+....        .
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  279 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccce
Confidence                    2477777765422  22223222  34667778889988764322   3334444  443221        1


Q ss_pred             EEEeecCCccEEEEEECCCCCEEEEEe---CCCeEEEEeCCCccce--eEEe-cCCceEEEEEeCCCCCccccccccCCC
Q psy226          225 VKTLTGHREWVRQIKVSPDGTLLASCS---NDHTARVWSLATKETK--AELR-GHDHTVECVAWAPGVASESISEAAGRP  298 (406)
Q Consensus       225 ~~~~~~~~~~v~~l~~~~~~~~l~s~~---~d~~v~vwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~  298 (406)
                      ...+........-+. ..++.+++...   .++.|...++......  ..+. .+...+....+..              
T Consensus       280 ~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~--------------  344 (430)
T d1qfma1         280 VKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV--------------  344 (430)
T ss_dssp             EEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEE--------------
T ss_pred             eEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEE--------------
Confidence            111221111122111 11222222222   2355555666543221  2222 2333222111110              


Q ss_pred             CCCCCCCEEEEEe-CCC--cEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEE-EEeC---CCeEEEEeCCCCcc
Q psy226          299 PGQGGGPYLATGS-RDK--TIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLV-SCGD---DKTLRVWDTANKRN  368 (406)
Q Consensus       299 ~~~~~~~~l~s~~-~d~--~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~-sgs~---d~~i~vwd~~~~~~  368 (406)
                          .+.+|+... .++  .|+++++.++.....+......|..+...++...+. +-++   =.+++-+|+.+++.
T Consensus       345 ----~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         345 ----RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             ----TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             ----ECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence                133555554 444  488899988876655554455566666556655443 3221   26788888887753

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.054  Score=44.91  Aligned_cols=162  Identities=10%  Similarity=0.041  Sum_probs=101.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCc----EEEEecccccCeeeEEECCCCCEEEEE-eCCCcEEEEeCC
Q psy226          105 HRSPVIKVIFHPVFSLMASC-SEDATIRLWDYETGE----YERALHGHLDSVQDIAFDQSGKLLVSC-SADMSLKLWDMS  178 (406)
Q Consensus       105 h~~~V~~v~~~p~~~~latg-s~dg~v~vwd~~~~~----~~~~~~~h~~~V~~l~~~~~g~~l~sg-s~d~~i~vwd~~  178 (406)
                      ....+.+++|++..+.|.-. ..++.|.--++....    ....+......+.+|++.+.+..|..+ ...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            44567789999887766544 456666666654321    222233334567789998766666655 455789999998


Q ss_pred             CCeEEEEEecCCcceEEEEEecCCCEEEEEe--CCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEE-eCCCe
Q psy226          179 TYQCLKTMQGHDHNVTGVAFLPNSDFVLSAS--RDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASC-SNDHT  255 (406)
Q Consensus       179 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~~  255 (406)
                      .......+........++++.|...+|+...  ..+.|.-.++............-.....+++++.++.|.-+ ...+.
T Consensus       108 g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~  187 (266)
T d1ijqa1         108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (266)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCE
Confidence            7665555555556788999999777666543  33456556664433333333344567899999877655544 56788


Q ss_pred             EEEEeCCCccc
Q psy226          256 ARVWSLATKET  266 (406)
Q Consensus       256 v~vwd~~~~~~  266 (406)
                      |...++.....
T Consensus       188 I~~~~~dG~~~  198 (266)
T d1ijqa1         188 ISSIDVNGGNR  198 (266)
T ss_dssp             EEEEETTSCSC
T ss_pred             EEEEECCCCCE
Confidence            88888865443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.10  E-value=0.086  Score=48.85  Aligned_cols=272  Identities=13%  Similarity=0.072  Sum_probs=142.4

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEeccccc-CeeeEEECC--CCCEEEEEeC------CCcEEEEeCCCCeEEEEEecC
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHGHLD-SVQDIAFDQ--SGKLLVSCSA------DMSLKLWDMSTYQCLKTMQGH  189 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~h~~-~V~~l~~~~--~g~~l~sgs~------d~~i~vwd~~~~~~~~~~~~h  189 (406)
                      ..++.+..|+.|.-.|..+|+.......+.. .-..+.-.|  .+..++.+..      .|.|.-+|..+++.+-.+..-
T Consensus       118 ~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  197 (560)
T d1kv9a2         118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV  197 (560)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             CeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeec
Confidence            4677888899999999999988766542211 000010011  1223444332      367999999999988766421


Q ss_pred             ------------------------------CcceE-EEEEecCCCEEEEEeC-------------------CCcEEEEEc
Q psy226          190 ------------------------------DHNVT-GVAFLPNSDFVLSASR-------------------DKTIKMWEV  219 (406)
Q Consensus       190 ------------------------------~~~v~-~~~~~p~~~~l~s~s~-------------------d~~i~iwd~  219 (406)
                                                    ...+. .+++.|..++++.+..                   ...|.-.|+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~  277 (560)
T d1kv9a2         198 PGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP  277 (560)
T ss_dssp             CCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred             cccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecC
Confidence                                          01111 2556666666554321                   235667788


Q ss_pred             CCCeEEEEeecCC--cc-------EEEEEECCCC---CEEEEEeCCCeEEEEeCCCccceeEEecCC-ceEEEEE-----
Q psy226          220 ATGYCVKTLTGHR--EW-------VRQIKVSPDG---TLLASCSNDHTARVWSLATKETKAELRGHD-HTVECVA-----  281 (406)
Q Consensus       220 ~~~~~~~~~~~~~--~~-------v~~l~~~~~~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~v~~~~-----  281 (406)
                      ++|+....++...  .+       ..-..+..+|   ..++.+..+|.+.++|..+++.+.....-. .....+.     
T Consensus       278 ~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~  357 (560)
T d1kv9a2         278 DTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGR  357 (560)
T ss_dssp             TTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCC
T ss_pred             CccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhcc
Confidence            8998776665322  11       1112222234   356778899999999998887654332111 0011110     


Q ss_pred             ---------------eCCCCCccccccccCCCCCCCCCCEEEEE------------------------------------
Q psy226          282 ---------------WAPGVASESISEAAGRPPGQGGGPYLATG------------------------------------  310 (406)
Q Consensus       282 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~------------------------------------  310 (406)
                                     +.|.......   ......++....++..                                    
T Consensus       358 ~~~~~~~~~~~~~~~~~p~~~Gg~~---w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  434 (560)
T d1kv9a2         358 PVEAPGVRYEKEPIVMWPSPFGAHN---WHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA  434 (560)
T ss_dssp             EEECTTTTCSSSCEEESSCTTCSSC---SSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred             ccccccccccccceeeeeccccccc---cccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCc
Confidence                           0010000000   0000000001111111                                    


Q ss_pred             eCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccce-EEEEEEeCCCC
Q psy226          311 SRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHF-VTSLDFHRAHP  389 (406)
Q Consensus       311 ~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~-v~~l~~~~~~~  389 (406)
                      ...|.|.-||+.+|+.+-....... ..+-.++-.|..++.|+.||.++.+|..+++.+-+++..... -.-+.+..+|+
T Consensus       435 ~~~G~l~A~D~~tGk~~W~~~~~~~-~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGk  513 (560)
T d1kv9a2         435 VVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR  513 (560)
T ss_dssp             GCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccccceEEEeCCCCeEeeeccCCCC-CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            1125678899999988766542211 111112234678889999999999999999988666432111 01134555664


Q ss_pred             -EEEEe
Q psy226          390 -YVVTG  394 (406)
Q Consensus       390 -~l~sg  394 (406)
                       ||+..
T Consensus       514 qyv~v~  519 (560)
T d1kv9a2         514 QYVAIM  519 (560)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence             66543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.99  E-value=0.13  Score=47.82  Aligned_cols=76  Identities=14%  Similarity=0.229  Sum_probs=50.0

Q ss_pred             CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccc----cceEEEEEEeCCCC
Q psy226          314 KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAH----SHFVTSLDFHRAHP  389 (406)
Q Consensus       314 ~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h----~~~v~~l~~~~~~~  389 (406)
                      |.|.-||+.+|+.+-........... ..+-.|..|++|+.||.++.+|..+++.+-+++.-    ..+   +.|..+|+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg-~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGG-TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCC-EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCc-eEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCE
Confidence            46788899999888766543221111 12235778889999999999999999988766432    223   33555665


Q ss_pred             -EEEE
Q psy226          390 -YVVT  393 (406)
Q Consensus       390 -~l~s  393 (406)
                       ||+.
T Consensus       533 QYv~v  537 (573)
T d1kb0a2         533 QYVSV  537 (573)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             5443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.87  E-value=0.095  Score=45.54  Aligned_cols=112  Identities=18%  Similarity=0.198  Sum_probs=70.2

Q ss_pred             eEEECCCCCEEEEEeCCC-----------cEEEEeCCCCeEE--EEE-ecCCcceEEEEEecCCCEEEEEeCC-CcEEEE
Q psy226          153 DIAFDQSGKLLVSCSADM-----------SLKLWDMSTYQCL--KTM-QGHDHNVTGVAFLPNSDFVLSASRD-KTIKMW  217 (406)
Q Consensus       153 ~l~~~~~g~~l~sgs~d~-----------~i~vwd~~~~~~~--~~~-~~h~~~v~~~~~~p~~~~l~s~s~d-~~i~iw  217 (406)
                      ......+|+.++.|+.+.           .+.+||..+++..  ..+ ..+.....+.++.+++.+++.|+.+ .++.+|
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            334445677666666321           3678999875432  122 2233334566788999999888765 589999


Q ss_pred             EcCCCeEEEEeec-CCccEEEEEECCCCCEEEEEeCC------CeEEEEeCCCc
Q psy226          218 EVATGYCVKTLTG-HREWVRQIKVSPDGTLLASCSND------HTARVWSLATK  264 (406)
Q Consensus       218 d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~d------~~v~vwd~~~~  264 (406)
                      |..+..-...-.. ...+-...+..+||++++.|+.+      ..+.+||..+.
T Consensus       104 d~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         104 DSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            9988754332111 11223456777899999888753      35788887664

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.77  E-value=0.22  Score=46.37  Aligned_cols=148  Identities=16%  Similarity=0.138  Sum_probs=92.9

Q ss_pred             CEEEEEeCCCcEEEEEcCCCcEEEEeccc---cc-Ceee-EEECCCCCEEEEEeC------CCcEEEEeCCCCeEEEEEe
Q psy226          119 SLMASCSEDATIRLWDYETGEYERALHGH---LD-SVQD-IAFDQSGKLLVSCSA------DMSLKLWDMSTYQCLKTMQ  187 (406)
Q Consensus       119 ~~latgs~dg~v~vwd~~~~~~~~~~~~h---~~-~V~~-l~~~~~g~~l~sgs~------d~~i~vwd~~~~~~~~~~~  187 (406)
                      .+++.++.|+.|.-.|..+|+....+...   .. .+++ -.+  -+..++.|..      .|.|+-+|..+++.+-.+.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            46888999999999999999987766421   11 1211 011  1345555543      4889999999999887654


Q ss_pred             cCC-------------------------------------cce-EEEEEecCCCEEEEEeC----------------CCc
Q psy226          188 GHD-------------------------------------HNV-TGVAFLPNSDFVLSASR----------------DKT  213 (406)
Q Consensus       188 ~h~-------------------------------------~~v-~~~~~~p~~~~l~s~s~----------------d~~  213 (406)
                      ...                                     ..+ ..+++.+..++++.+..                ..+
T Consensus       200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~s  279 (596)
T d1w6sa_         200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT  279 (596)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred             ccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccc
Confidence            210                                     011 23456666666655533                234


Q ss_pred             EEEEEcCCCeEEEEeec--CCcc-------EEEEE-ECCCCC---EEEEEeCCCeEEEEeCCCcccee
Q psy226          214 IKMWEVATGYCVKTLTG--HREW-------VRQIK-VSPDGT---LLASCSNDHTARVWSLATKETKA  268 (406)
Q Consensus       214 i~iwd~~~~~~~~~~~~--~~~~-------v~~l~-~~~~~~---~l~s~~~d~~v~vwd~~~~~~~~  268 (406)
                      |.-.|+.+|+....++.  |..+       ...+. ...+|+   .++....+|.+.++|..+++.+.
T Consensus       280 ivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceee
Confidence            77789999998876653  3221       11111 233443   57778899999999998887664

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.55  E-value=0.19  Score=43.07  Aligned_cols=197  Identities=10%  Similarity=0.212  Sum_probs=114.8

Q ss_pred             CCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEE------CCCCCEEEEEeC--C--CcEEEEeCCC-CeEEE
Q psy226          116 PVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAF------DQSGKLLVSCSA--D--MSLKLWDMST-YQCLK  184 (406)
Q Consensus       116 p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~------~~~g~~l~sgs~--d--~~i~vwd~~~-~~~~~  184 (406)
                      |..++++.....+-|.+||+. |+.+..+.  .+.++.|..      .....-++.++.  +  .+|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            456788888888889999986 66666554  245555443      223334555552  2  3577786642 22333


Q ss_pred             EEecC-------CcceEEEEE--ecC-CC-EEEEEeCCCcEEEEEcC---CC----eEEEEeecCCccEEEEEECCCCCE
Q psy226          185 TMQGH-------DHNVTGVAF--LPN-SD-FVLSASRDKTIKMWEVA---TG----YCVKTLTGHREWVRQIKVSPDGTL  246 (406)
Q Consensus       185 ~~~~h-------~~~v~~~~~--~p~-~~-~l~s~s~d~~i~iwd~~---~~----~~~~~~~~~~~~v~~l~~~~~~~~  246 (406)
                      .+...       ...+.++|+  +|. +. ++++...+|.+..|.+.   .+    ..++.+.. ...+..+.++++...
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCc
Confidence            33221       124667776  554 43 56677788999888763   23    23444543 346788999999889


Q ss_pred             EEEEeCCCeEEEEeCCCc--cceeE---Ee--cCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEE
Q psy226          247 LASCSNDHTARVWSLATK--ETKAE---LR--GHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLW  319 (406)
Q Consensus       247 l~s~~~d~~v~vwd~~~~--~~~~~---~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lw  319 (406)
                      |..+-.+..+..++....  .....   ..  .....++.++.....              ...|.+++|.-.+++..+|
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~--------------~~~GylivSsQG~n~f~vy  259 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAA--------------DGKGYLLASSQGNSSYAIY  259 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECG--------------GGCEEEEEEEGGGTEEEEE
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcC--------------CCCeEEEEEcCCCCeEEEE
Confidence            999988877666655321  11111   11  123445555533210              1135566666678899999


Q ss_pred             ECCCC-eEEEEE
Q psy226          320 DVGSG-SLLFTL  330 (406)
Q Consensus       320 d~~~~-~~~~~~  330 (406)
                      |..+. ..+..|
T Consensus       260 dr~~~~~~~g~F  271 (353)
T d1h6la_         260 ERQGQNKYVADF  271 (353)
T ss_dssp             ESSTTCCEEEEE
T ss_pred             ecCCCccccceE
Confidence            98763 555444

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.18  E-value=0.38  Score=42.55  Aligned_cols=100  Identities=13%  Similarity=0.213  Sum_probs=64.2

Q ss_pred             CeeeEEECCCCCEEEEE-eCC----CcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCC-------------
Q psy226          150 SVQDIAFDQSGKLLVSC-SAD----MSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRD-------------  211 (406)
Q Consensus       150 ~V~~l~~~~~g~~l~sg-s~d----~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d-------------  211 (406)
                      .+...+++|++++++-+ +.+    ..++++|+.+++.+..... ......++|.+++..|+....|             
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            34567789999988743 222    4799999999987643211 1223568899999977654432             


Q ss_pred             ---CcEEEEEcCCCeE--EEEeec--CCccEEEEEECCCCCEEEEE
Q psy226          212 ---KTIKMWEVATGYC--VKTLTG--HREWVRQIKVSPDGTLLASC  250 (406)
Q Consensus       212 ---~~i~iwd~~~~~~--~~~~~~--~~~~v~~l~~~~~~~~l~s~  250 (406)
                         ..|..|.+.+...  ...+..  ...++..+..++++++++..
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence               2577777766532  222332  33467778889999987643

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.15  E-value=0.35  Score=41.87  Aligned_cols=176  Identities=9%  Similarity=-0.017  Sum_probs=100.8

Q ss_pred             ceEEEEEecCCCEEEEEeCCCcEEEEEcCC----------C-eEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEe
Q psy226          192 NVTGVAFLPNSDFVLSASRDKTIKMWEVAT----------G-YCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWS  260 (406)
Q Consensus       192 ~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~----------~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd  260 (406)
                      ...-++.++...++++|+.++ +.|-.+..          + ......  .-..|..++|+.+  .++.. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            344577777777888888775 55655311          1 111111  1135788889754  34443 456788888


Q ss_pred             CCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC-----CCc
Q psy226          261 LATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG-----HDN  335 (406)
Q Consensus       261 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~-----h~~  335 (406)
                      ............-..++..+.+.|.                    .++....++.+-++++..+.......+     -.+
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~--------------------~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~  171 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNN--------------------TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTN  171 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--------------------EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECS
T ss_pred             eeccccccccccccccccceecCCc--------------------eeEEEecCCCEEEEEeccCccccccCCcceEEecC
Confidence            7664444333334456677777662                    356667788999999988754322211     134


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEE-EeCCCCccceeeccccceEEEEEEeCCCCEEEEe
Q psy226          336 WVRGVTFHPGGKYLVSCGDDKTLRV-WDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTG  394 (406)
Q Consensus       336 ~v~~l~~s~~g~~l~sgs~d~~i~v-wd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sg  394 (406)
                      .+.+++|++.|..++++..++ ..+ -++.....+..-......|.++.|-.+..++++-
T Consensus       172 ~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         172 SQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             SEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            578888988888888775432 222 1222222111111123457888888777766643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.05  E-value=0.31  Score=40.39  Aligned_cols=235  Identities=13%  Similarity=0.164  Sum_probs=130.6

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEEecCC
Q psy226          112 VIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMST-YQCLKTMQGHD  190 (406)
Q Consensus       112 v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~-~~~~~~~~~h~  190 (406)
                      ...||..+.||-=+ ..++.++|+++.+..+...- ..+|.--.|-.+. .|+-.. +..|.-|+++. .++.+.+..|.
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~  143 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS  143 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcc
Confidence            45688888887665 56899999999887766553 3466666776543 444443 45799999953 24555555553


Q ss_pred             ----cceEEEEEecCCCEEEEE---eC----CCcEEEEEcCCCeEEEEeecCCccEEEEEECCCC---CEEEEEe---CC
Q psy226          191 ----HNVTGVAFLPNSDFVLSA---SR----DKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDG---TLLASCS---ND  253 (406)
Q Consensus       191 ----~~v~~~~~~p~~~~l~s~---s~----d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s~~---~d  253 (406)
                          ..|..-..+++.+.++..   ..    .|.+.+|..+.+ .-+.+.||......+.+..+.   .+|+-+.   ..
T Consensus       144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~  222 (327)
T d1utca2         144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  222 (327)
T ss_dssp             GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred             cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence                346666667777754432   22    356788887654 446677776544444332211   2333222   33


Q ss_pred             CeEEEEeCCCccc-eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCCCeEEEEEeC
Q psy226          254 HTARVWSLATKET-KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGSGSLLFTLIG  332 (406)
Q Consensus       254 ~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~~~~~~~~~~  332 (406)
                      +.+++.++..... ...+   ......+-|.|....+..-....    ...-..+..-+.-|.|.+||+.++.+++.-+=
T Consensus       223 ~kLhIiEig~~~~g~~~f---~kk~vdi~fppea~~DFPvamqv----s~kygiiyviTK~G~i~lyDleTgt~i~~nRI  295 (327)
T d1utca2         223 GKLHIIEVGTPPTGNQPF---PKKAVDVFFPPEAQNDFPVAMQI----SEKHDVVFLITKYGYIHLYDLETGTCIYMNRI  295 (327)
T ss_dssp             EEEEEEECSCCCTTCCCC---CCEEEECCCCTTCTTCCEEEEEE----ETTTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEEEcCCCccCCCCC---cceeEEEECCccccCCcEEEEEe----eccCCEEEEEecCcEEEEEEcccccEEEEeec
Confidence            6788888765321 1111   11122233333322111000000    01123566667889999999999999887655


Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeE
Q psy226          333 HDNWVRGVTFHPGGKYLVSCGDDKTL  358 (406)
Q Consensus       333 h~~~v~~l~~s~~g~~l~sgs~d~~i  358 (406)
                      ....|..-+-+.+..-+++...+|.|
T Consensus       296 s~~~iF~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         296 SGETIFVTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred             CCCceEEeccCCCCceEEEECCCCeE
Confidence            55555544444443344444455544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.34  E-value=0.61  Score=38.61  Aligned_cols=252  Identities=10%  Similarity=0.125  Sum_probs=153.6

Q ss_pred             CCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEE
Q psy226          127 DATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVL  206 (406)
Q Consensus       127 dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~  206 (406)
                      ...|.|-|+.++....+-.   -...+.-.+|..+.|+.-+ ..++.++|+++.+.++...-.+ +|.-=.|..+ +.|+
T Consensus        44 ~~~VvIidl~n~~~~~Rrp---i~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~-~~L~  117 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVA  117 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSS-SEEE
T ss_pred             CceEEEEECCCCCcceecc---cchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCC-CEEE
Confidence            3478888887654221111   1223445578888877665 5689999999998888776555 4544556544 3443


Q ss_pred             EEeCCCcEEEEEcCCC-eEEEEeecCC----ccEEEEEECCCCCEEEEEe---C----CCeEEEEeCCCccceeEEecCC
Q psy226          207 SASRDKTIKMWEVATG-YCVKTLTGHR----EWVRQIKVSPDGTLLASCS---N----DHTARVWSLATKETKAELRGHD  274 (406)
Q Consensus       207 s~s~d~~i~iwd~~~~-~~~~~~~~~~----~~v~~l~~~~~~~~l~s~~---~----d~~v~vwd~~~~~~~~~~~~~~  274 (406)
                      -. .+..|.-|++... .+.+.+.-|.    ..|..-..++++++++..+   .    .|.+.+|..+.. ..+.+.+|.
T Consensus       118 lV-T~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGha  195 (327)
T d1utca2         118 LV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA  195 (327)
T ss_dssp             EE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSE
T ss_pred             EE-cCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCcccccee
Confidence            33 2457999999432 4566665553    3566777888998876544   2    356778887643 456677876


Q ss_pred             ceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEe---CCCcEEEEECCCC---eE-----EEEE--e--CCCcCEEE
Q psy226          275 HTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGS---RDKTIKLWDVGSG---SL-----LFTL--I--GHDNWVRG  339 (406)
Q Consensus       275 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~lwd~~~~---~~-----~~~~--~--~h~~~v~~  339 (406)
                      ..-..+...-...               ....++-+.   ..+.+.+.++...   ..     ...+  .  ...+..-+
T Consensus       196 a~F~~~~~~g~~~---------------~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPva  260 (327)
T d1utca2         196 ASFAQFKMEGNAE---------------ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA  260 (327)
T ss_dssp             EEEEEECCTTCSS---------------CEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEE
T ss_pred             eeeEEEEcCCCCC---------------CceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEE
Confidence            6554443321110               011222222   2246777777441   11     1111  1  12455677


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCCCCEEEEeeCCCeEE
Q psy226          340 VTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRAHPYVVTGSVDKTVK  401 (406)
Q Consensus       340 l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~~~~l~sgs~Dg~v~  401 (406)
                      +..|+.-..++.-..-|.|+++|+.++.++..-.--...|..-+-+....-++.-..+|.|.
T Consensus       261 mqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         261 MQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            88888878888889999999999999998765544455565555555555555555777764

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.95  E-value=0.99  Score=38.92  Aligned_cols=137  Identities=9%  Similarity=0.050  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCC-----------CcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeC
Q psy226          109 VIKVIFHPVFSLMASCSEDATIRLWDYET-----------GEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDM  177 (406)
Q Consensus       109 V~~v~~~p~~~~latgs~dg~v~vwd~~~-----------~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~  177 (406)
                      ..-++.++...+++.|+.++ ++|-....           ..+....  .-..|..++|+.+  .|+.. .++.+..++.
T Consensus        39 ~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          39 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            45678888888999888875 56665221           1111111  1235888999754  45544 4456777877


Q ss_pred             CCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeec-----CCccEEEEEECCCCCEEEEEeC
Q psy226          178 STYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTG-----HREWVRQIKVSPDGTLLASCSN  252 (406)
Q Consensus       178 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~s~~~  252 (406)
                      ...........-..++..+.++|.  .++....++.+.++++..+.......+     -+..+.+++|++.|..++++..
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCC
Confidence            654333333334556777777764  566677889999999988754333221     2345778888888888887744


Q ss_pred             C
Q psy226          253 D  253 (406)
Q Consensus       253 d  253 (406)
                      +
T Consensus       191 ~  191 (381)
T d1xipa_         191 G  191 (381)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.94  E-value=1.4  Score=40.54  Aligned_cols=76  Identities=12%  Similarity=0.222  Sum_probs=51.5

Q ss_pred             CcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeecc----ccceEEEEEEeCCC-
Q psy226          314 KTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEA----HSHFVTSLDFHRAH-  388 (406)
Q Consensus       314 ~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~----h~~~v~~l~~~~~~-  388 (406)
                      |.|.-+|+.+|+.+-....+... .+-.++..|..|++|+.||.++.+|..+++.+-+++.    +..+   +.|..+| 
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~-~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPL-WAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCC-CSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCC-ccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCE
Confidence            56788899999888776543221 1111234577888999999999999999999866643    2223   4566677 


Q ss_pred             CEEEE
Q psy226          389 PYVVT  393 (406)
Q Consensus       389 ~~l~s  393 (406)
                      +|++.
T Consensus       542 qYv~i  546 (582)
T d1flga_         542 QYLGV  546 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            46554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.44  E-value=1.8  Score=39.68  Aligned_cols=110  Identities=15%  Similarity=0.058  Sum_probs=64.9

Q ss_pred             CCEEEEEeCCCcEEEEEcCCCcEEEEecccc--------cCe-eeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEec
Q psy226          118 FSLMASCSEDATIRLWDYETGEYERALHGHL--------DSV-QDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQG  188 (406)
Q Consensus       118 ~~~latgs~dg~v~vwd~~~~~~~~~~~~h~--------~~V-~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~  188 (406)
                      +..|..++.++.|.-.|..+|+.+-.+....        ..+ ..+++.  +..++.++.|+.+.-.|..+++.+.....
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~  145 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeecc
Confidence            3567778889999999999999876653211        111 123332  35677889999999999999987644321


Q ss_pred             --CCc--ceE--EEEEec--CCCEEEEE-------eCCCcEEEEEcCCCeEEEEee
Q psy226          189 --HDH--NVT--GVAFLP--NSDFVLSA-------SRDKTIKMWEVATGYCVKTLT  229 (406)
Q Consensus       189 --h~~--~v~--~~~~~p--~~~~l~s~-------s~d~~i~iwd~~~~~~~~~~~  229 (406)
                        +..  ...  -+.+.+  .+..++..       +..+.|.-+|..+|+.+-.+.
T Consensus       146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~  201 (582)
T d1flga_         146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred             cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEe
Confidence              110  000  011111  12333322       234568888888888776553

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=94.39  E-value=0.57  Score=38.38  Aligned_cols=220  Identities=12%  Similarity=0.057  Sum_probs=95.4

Q ss_pred             ccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEEecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEE
Q psy226          148 LDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTMQGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKT  227 (406)
Q Consensus       148 ~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~  227 (406)
                      ...|..|+-..  .+.+.-. ||.|..|-......+-.-......|..++.  ...+.+.- .|+.+..|.-...-....
T Consensus        25 ~~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~--G~~~~~al-~dg~v~~wG~~~~gq~~~   98 (273)
T d1jtdb_          25 QSGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAA--GNYHSLAL-KDGEVIAWGGNEDGQTTV   98 (273)
T ss_dssp             SSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEE--CSSEEEEE-ETTEEEEEECCTTSTTCC
T ss_pred             CCCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEec--CCCceeee-eeeeeeccCCCcceeecc
Confidence            34577776632  2333334 899999965432211111112234444443  22222222 478898997533111110


Q ss_pred             eecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEE
Q psy226          228 LTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYL  307 (406)
Q Consensus       228 ~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  307 (406)
                      .......+..++....  ..+. -.|+.+..|.-...............|..+.-                     +.+.
T Consensus        99 ~~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~---------------------~~~~  154 (273)
T d1jtdb_          99 PAEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG---------------------GVYT  154 (273)
T ss_dssp             CGGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEE---------------------CSSE
T ss_pred             ccccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEec---------------------ccee
Confidence            0111122333333222  2222 24888888864432221111111122222221                     1122


Q ss_pred             EEEeCCCcEEEEECCCCeEEEEEeCCCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCccceeeccccceEEEEEEeCC
Q psy226          308 ATGSRDKTIKLWDVGSGSLLFTLIGHDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTANKRNMKTLEAHSHFVTSLDFHRA  387 (406)
Q Consensus       308 ~s~~~d~~i~lwd~~~~~~~~~~~~h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~~~~  387 (406)
                      .....++.+..|.................|..|+...  .+.+.-. ||.|+.|=....-.+..-......|..|+-...
T Consensus       155 ~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~--~h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~  231 (273)
T d1jtdb_         155 ALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGI--FHSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW  231 (273)
T ss_dssp             EEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS
T ss_pred             eeeecccceeEeecccCCcccccccccCCccceeccc--eeeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcc
Confidence            2334577888886543221111112344577776543  2322223 799999964332111111111223555554433


Q ss_pred             CCEEEEeeCCCeEEEe
Q psy226          388 HPYVVTGSVDKTVKVW  403 (406)
Q Consensus       388 ~~~l~sgs~Dg~v~iw  403 (406)
                      . .++.  .||.|..|
T Consensus       232 ~-~~~l--~~g~v~~W  244 (273)
T d1jtdb_         232 Y-SLAL--KNGKVIAW  244 (273)
T ss_dssp             C-EEEE--ETTEEEEE
T ss_pred             e-EEEE--ECCEEEEE
Confidence            3 3443  37888888

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.9  Score=37.00  Aligned_cols=52  Identities=15%  Similarity=0.194  Sum_probs=27.3

Q ss_pred             cEEEEEcCCCcEEEE--ecccccCeeeEEECCCCCEEEEEeC---------CCcEEEEeCCCCeE
Q psy226          129 TIRLWDYETGEYERA--LHGHLDSVQDIAFDQSGKLLVSCSA---------DMSLKLWDMSTYQC  182 (406)
Q Consensus       129 ~v~vwd~~~~~~~~~--~~~h~~~V~~l~~~~~g~~l~sgs~---------d~~i~vwd~~~~~~  182 (406)
                      .+.+||..+++....  +......-..+.+  ++.+++.|+.         -..+.+||..+...
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w   82 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW   82 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccc
Confidence            578999998876543  2211111112222  4555555542         13567788776543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.12  E-value=3.6  Score=36.21  Aligned_cols=103  Identities=11%  Similarity=0.189  Sum_probs=60.6

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEec--------ccccCeeeEEECCC---CCEEEEEeC-------
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALH--------GHLDSVQDIAFDQS---GKLLVSCSA-------  168 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~--------~h~~~V~~l~~~~~---g~~l~sgs~-------  168 (406)
                      ..-.+++|.|++++|++--.+|.|++++..++.......        .-......|+|+|+   ..++.....       
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            455699999999999988678999999988876533221        11245678999985   334433211       


Q ss_pred             C----Cc--EEEEeCCCC--e-----E-EEEE-ecCCcceEEEEEecCCCEEEEEe
Q psy226          169 D----MS--LKLWDMSTY--Q-----C-LKTM-QGHDHNVTGVAFLPNSDFVLSAS  209 (406)
Q Consensus       169 d----~~--i~vwd~~~~--~-----~-~~~~-~~h~~~v~~~~~~p~~~~l~s~s  209 (406)
                      +    ..  +..+.....  .     . +..+ ....+....|.|.|++.+.++.+
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~G  162 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEec
Confidence            1    11  222222111  1     1 1111 12235577899999998766654

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=89.81  E-value=3.9  Score=32.94  Aligned_cols=221  Identities=10%  Similarity=-0.020  Sum_probs=96.5

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcEEEEecccccCeeeEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Q psy226          107 SPVIKVIFHPVFSLMASCSEDATIRLWDYETGEYERALHGHLDSVQDIAFDQSGKLLVSCSADMSLKLWDMSTYQCLKTM  186 (406)
Q Consensus       107 ~~V~~v~~~p~~~~latgs~dg~v~vwd~~~~~~~~~~~~h~~~V~~l~~~~~g~~l~sgs~d~~i~vwd~~~~~~~~~~  186 (406)
                      ..|..|+--.  .+.+.-. ||.|..|-....-.+..-..-...|..++.-.. ..++  -.|+.+..|.....-....-
T Consensus        26 ~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~-~~~a--l~dg~v~~wG~~~~gq~~~~   99 (273)
T d1jtdb_          26 SGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLA--LKDGEVIAWGGNEDGQTTVP   99 (273)
T ss_dssp             SSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSS-EEEE--EETTEEEEEECCTTSTTCCC
T ss_pred             CCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCC-ceee--eeeeeeeccCCCcceeeccc
Confidence            3466665532  2222234 899999975542211111122335556654222 2222  24899999975432111000


Q ss_pred             ecCCcceEEEEEecCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccc
Q psy226          187 QGHDHNVTGVAFLPNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKET  266 (406)
Q Consensus       187 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~  266 (406)
                      ......+..++...  ...+. -.|+.+..|.................|..++-.  ...++ ...++.+..|-......
T Consensus       100 ~~~~~~~~~i~~~~--~~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-~~~~g~~~~~G~~~~g~  173 (273)
T d1jtdb_         100 AEARSGVDAIAAGA--WASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL-AVKNGGVIAWGDNYFGQ  173 (273)
T ss_dssp             GGGGSSCCEEEEET--TEEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE-EEETTEEEEEECCTTST
T ss_pred             cccccceeEEeeec--ccccc-cccccceecccCCCCceeeeccCCceEEEEecc--ceeee-eecccceeEeecccCCc
Confidence            11112233343332  22222 247888888643321111111112234433322  22233 33477888886543322


Q ss_pred             eeEEecCCceEEEEEeCCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEECCC-CeEEEEEeCCCcCEEEEEEcCC
Q psy226          267 KAELRGHDHTVECVAWAPGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDVGS-GSLLFTLIGHDNWVRGVTFHPG  345 (406)
Q Consensus       267 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~~~-~~~~~~~~~h~~~v~~l~~s~~  345 (406)
                      ..........|..++-.                    ..+.+.- .||.|+-|=... +++- ........|..|+-...
T Consensus       174 ~~~~~~~~~~v~~Is~G--------------------~~h~~~l-~dG~v~~WG~n~~Gql~-~~~~~~~~v~~I~~G~~  231 (273)
T d1jtdb_         174 TTVPAEAQSGVDDVAGG--------------------IFHSLAL-KDGKVIAWGDNRYKQTT-VPTEALSGVSAIASGEW  231 (273)
T ss_dssp             TSCCGGGSSSEEEEEEC--------------------SSEEEEE-ETTEEEEEECCTTSTTC-CCGGGGSSCCEEEECSS
T ss_pred             ccccccccCCccceecc--------------------ceeeEEE-ecCcEEEcCCCCCCccC-CCccCCCCcEEEEeCcc
Confidence            21111223345554422                    1122222 378899885432 2211 11112234666664332


Q ss_pred             CCEEEEEeCCCeEEEEeCC
Q psy226          346 GKYLVSCGDDKTLRVWDTA  364 (406)
Q Consensus       346 g~~l~sgs~d~~i~vwd~~  364 (406)
                       ..++.  .||.|+.|-..
T Consensus       232 -~~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         232 -YSLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             -CEEEE--ETTEEEEESTT
T ss_pred             -eEEEE--ECCEEEEECCC
Confidence             23333  38999999543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.14  E-value=6.7  Score=34.34  Aligned_cols=62  Identities=10%  Similarity=0.078  Sum_probs=40.1

Q ss_pred             EEEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEeCCCccceeEEe--------cCCceEEEEEeCCCC
Q psy226          225 VKTLTGHREWVRQIKVSPDGTLLASCSNDHTARVWSLATKETKAELR--------GHDHTVECVAWAPGV  286 (406)
Q Consensus       225 ~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~  286 (406)
                      +..+...-...++|+|.|+|+++++--.+|.|++++..++.......        .-+.....++++|+.
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf   88 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDF   88 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTT
T ss_pred             EEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCC
Confidence            33343334556799999999988877668999999877654322111        112445678888753

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.28  E-value=4  Score=32.77  Aligned_cols=19  Identities=21%  Similarity=0.270  Sum_probs=12.7

Q ss_pred             CCCEEEEeeCCCe-----EEEeec
Q psy226          387 AHPYVVTGSVDKT-----VKVWEC  405 (406)
Q Consensus       387 ~~~~l~sgs~Dg~-----v~iw~~  405 (406)
                      ++++++.|+.++.     |.+||.
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~  265 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDP  265 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEET
T ss_pred             CCEEEEEecCCCCeecceEEEEEC
Confidence            5778888876653     566664

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=83.75  E-value=11  Score=31.59  Aligned_cols=186  Identities=9%  Similarity=0.193  Sum_probs=104.2

Q ss_pred             cCCCEEEEEeCCCcEEEEEcCCCeEEEEeecCCccEEEEEE------CCCCCEEEEEe--CC--CeEEEEeCCCcc-cee
Q psy226          200 PNSDFVLSASRDKTIKMWEVATGYCVKTLTGHREWVRQIKV------SPDGTLLASCS--ND--HTARVWSLATKE-TKA  268 (406)
Q Consensus       200 p~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~v~~l~~------~~~~~~l~s~~--~d--~~v~vwd~~~~~-~~~  268 (406)
                      |...+++.....+-|.+||+. |+.++.+..  +.++.+..      .....-++.++  .+  .+|.+|.+.... .+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345677777777779999985 777776642  33444433      22233355555  22  367788764322 122


Q ss_pred             EEecCCc-------eEEEEEe--CCCCCccccccccCCCCCCCCCCEEEEEeCCCcEEEEEC---CCC----eEEEEEeC
Q psy226          269 ELRGHDH-------TVECVAW--APGVASESISEAAGRPPGQGGGPYLATGSRDKTIKLWDV---GSG----SLLFTLIG  332 (406)
Q Consensus       269 ~~~~~~~-------~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~lwd~---~~~----~~~~~~~~  332 (406)
                      .+.....       .+..+++  .|.                .+..++++...+|.+..|.+   ..+    +.++.+. 
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~----------------~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-  177 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQK----------------TGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-  177 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTT----------------TCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-
T ss_pred             cccccccccccccCcceEEEEEecCC----------------CCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-
Confidence            2211111       1222222  221                12236677778888887765   333    3344454 


Q ss_pred             CCcCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--C---ccceeecc--ccceEEEEEEeC--C--CCEEEEeeCCCeEE
Q psy226          333 HDNWVRGVTFHPGGKYLVSCGDDKTLRVWDTAN--K---RNMKTLEA--HSHFVTSLDFHR--A--HPYVVTGSVDKTVK  401 (406)
Q Consensus       333 h~~~v~~l~~s~~g~~l~sgs~d~~i~vwd~~~--~---~~~~~l~~--h~~~v~~l~~~~--~--~~~l~sgs~Dg~v~  401 (406)
                      -...+.+|.+++....|+.+-++.-|..++...  .   ..+....+  ....+..|+.-+  +  |-+|||.-.|++..
T Consensus       178 ~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~  257 (353)
T d1h6la_         178 MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYA  257 (353)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEE
Confidence            345688999999989999998887666665531  1   11211111  244577777543  2  33556666788899


Q ss_pred             Eeec
Q psy226          402 VWEC  405 (406)
Q Consensus       402 iw~~  405 (406)
                      +||-
T Consensus       258 vydr  261 (353)
T d1h6la_         258 IYER  261 (353)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            9874