Psyllid ID: psy2274

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MHLVCAQQIPNCNKTMQVKSCNIISQYSSGSSGQNGVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTLYRFLTRRTNSKFNKIILKRLFMSKINSISERELDVKPTNTLALLPVFPTVTRKLTSDLKAASLNGHEDEEPARDTR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHccccccccEEEEEcEEEcccccEEcccEEEEEEcccHHHHHHHHHHccEEcccHHHHccccccEEEEEEcccccHHHHHHHHHHHcccccHHHHHHHccccccccEEEEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEccccccccccEEEEEccEEcccccccccccccEEcccccccEEEccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccEEEEEEEEccccEEEEccccEEEEEEccHHHHHHHHHccccEccHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHccccccccccccccccHEEHcccccccHcHHccHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mhlvcaqqipncnktmqvkscniisqyssgssgqngvdichkydrrvrrtkpkskDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMskinrppmaISKIVRFMkkptregrVAVIVGTivddprmwtipkLTIVRFmkkptregrVAVIVGTivddprmwtipkltLYRFLTRRTNSKFNKIILKRLFMSKINSisereldvkptntlallpvfptvTRKLTSDLKAaslnghedeepardtr
Flexible Loop (DISEMBL)
mhlvcaqqipncnktMQVKSCNIISQyssgssgqngvDICHKydrrvrrtkpkskdvylELLVKLYRfltrrtnskfnkiilkrlfmskinrppmaISKIVrfmkkptregrvavivgtivddprmwtipkltivrfmkkptregrvavivgtivddprmwtipkltlyrfltrrtnskfnkiiLKRLFMSKINSIsereldvkptntlallpvfptvTRKLTSDLkaaslnghedeepardtr
Low Complexity Region (SEG)
MHLVCAQQIPNCNKTMQVKscniisqyssgssgqnGVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTLYRFLTRRTNSKFNKIILKRLFMSKINSISERELDVKPTNTLALLPVFPTVTRKLTSDLKAASLNGHEDEEPARDTR
Disordered region (IsUnstruct)
***VCAQQIPNCNKTMQVKSCNIISQY********GVDICHKYDRRVRRT**KSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTLYRFLTRRTNSKFNKIILKRLFMSKINSISERELDVKPTNTLALLPVFPTVTRKL**********************
Disordered Region (DISOPRED)
**LVCAQQIPNCNK******************************************VYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTLYRFLTRRTN*KFNKIILKRLFMSKINSISERELDVKPTNTLALLPVFPTVTRKLTSDLKAAS**************
Disordered Region (DISEMBL)
MHLVCAQQIPNCNKTMQVKSCNIISQY********GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTLYRFLTRRTNSKFNKIILKRLFMSKINSISERELDVKPTNTLALLPVFPTVTRKLTSDLKAAS**************
Disordered Region (DISPRO)
*HLVCAQQIPNCNKTMQVKSCNIISQYSS****QNGVDIC*KYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTLYRFLTRRTNSKFNKIILKRLFMSKINSISERELDVKPTNTLALLPVFPTVTRKLTSDLKA*S**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHLVCAQQIPNCNKTMQVKSCNIISQYSSGSSGQNGVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTLYRFLTRRTNSKFNKIILKRLFMSKINSISERELDVKPTNTLALLPVFPTVTRKLTSDLKAASLNGHEDEEPARDTR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q0PXY6	188	60S ribosomal protein L18	N/A	N/A	0.405	0.526	0.989	1e-51
Q4GXG7	188	60S ribosomal protein L18	N/A	N/A	0.405	0.526	0.737	7e-37
Q6F442	183	60S ribosomal protein L18	N/A	N/A	0.409	0.546	0.65	4e-36
Q962Y8	183	60S ribosomal protein L18	N/A	N/A	0.491	0.655	0.575	5e-36
Q5UAS1	183	60S ribosomal protein L18	N/A	N/A	0.471	0.628	0.558	6e-36
Q56FG8	188	60S ribosomal protein L18	N/A	N/A	0.524	0.680	0.539	9e-35
Q9VS34	188	60S ribosomal protein L18	yes	N/A	0.491	0.638	0.566	2e-33
Q5E973	188	60S ribosomal protein L18	yes	N/A	0.405	0.526	0.636	4e-32
P12001	188	60S ribosomal protein L18	yes	N/A	0.405	0.526	0.626	2e-31
D0VWQ3	188	Ribosomal protein L18 OS=	yes	N/A	0.405	0.526	0.626	3e-31

>sp|Q0PXY6|RL18_DIACI 60S ribosomal protein L18 OS=Diaphorina citri GN=RpL18 PE=2 SV=1

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/99 (98%), Positives = 99/99 (100%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM
Sbjct: 2   GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLT+
Sbjct: 62  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTV 100

Diaphorina citri (taxid: 121845)

>sp|Q4GXG7|RL18_TIMBA 60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1

 Score =  154 bits (388), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 87/99 (87%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           G+DI HKYDR+VRRT+PKS+DVYL LLVKLYR+L RRT +KFNKIILKRLFMSKI RPP+
Sbjct: 2   GIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPI 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           ++SK+VRFMKKP RE   AVIVGT+ DD R++ IPKL+I
Sbjct: 62  SLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSI 100

Timarcha balearica (taxid: 79517)

>sp|Q6F442|RL18_PLUXY 60S ribosomal protein L18 OS=Plutella xylostella GN=RpL18 PE=2 SV=1

 Score =  151 bits (381), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 89/100 (89%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           G+DI HK+DR+VRRT+ KS+DVYL LLVKLYR+L RRTN+KFN+I+L+RLFMS+INRPP+
Sbjct: 2   GIDINHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPL 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIV 135
           ++S++ R MKKPTREG +AV+VGTI +D R++ +PK+T+ 
Sbjct: 62  SLSRLARHMKKPTREGLIAVVVGTITNDTRLYKVPKMTVA 101

Plutella xylostella (taxid: 51655)

>sp|Q962Y8|RL18_SPOFR 60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1

 Score =  151 bits (381), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/120 (57%), Positives = 93/120 (77%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           G+DI HK+DR+VRRT+ KS+DVYL LLVKLYR+L RRTNSKFN IIL+RLFMS+INRPP+
Sbjct: 2   GIDINHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNSKFNTIILRRLFMSRINRPPL 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
           ++S++ R MKKPTREG +AV+VGTI +D R++ +PK+++           R+    G I+
Sbjct: 62  SLSRLARHMKKPTREGMIAVVVGTITNDVRLYKVPKMSVAALHVTEKARARILAAGGEIL 121

Spodoptera frugiperda (taxid: 7108)

>sp|Q5UAS1|RL18_BOMMO 60S ribosomal protein L18 OS=Bombyx mori GN=RpL18 PE=2 SV=1

 Score =  150 bits (380), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 94/120 (78%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           G+DI HK+DR+VRRT+ KS+D+YL LLVKLYR+L RRTN+KFN+I+L+RLFMS+INRPP+
Sbjct: 2   GIDINHKHDRKVRRTEVKSQDIYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPI 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
           ++S++ R MKKPTREG +AV+VGT+ +D R++ IPK+T+           R+    G I+
Sbjct: 62  SVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEIL 121

Bombyx mori (taxid: 7091)

>sp|Q56FG8|RL18_LYSTE 60S ribosomal protein L18 OS=Lysiphlebus testaceipes GN=RpL18 PE=2 SV=1

 Score =  147 bits (370), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/128 (53%), Positives = 96/128 (75%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           G+DI HKYDR+VRRT+P+S+D+YL LLVK+YRFL RRTNSKF++IILKRLFMS+IN PP+
Sbjct: 2   GIDINHKYDRKVRRTEPRSQDIYLRLLVKVYRFLARRTNSKFSRIILKRLFMSRINLPPI 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
           +++++ RFMKK +R+  +AV+VGTI DD R++ IPKL +          GR+    G I+
Sbjct: 62  SLARVCRFMKKESRKNSIAVVVGTITDDARIFEIPKLKVCALRITEKARGRILKAGGEII 121

Query: 156 DDPRMWTI 163
              ++  I
Sbjct: 122 TFEKLAEI 129

Lysiphlebus testaceipes (taxid: 77504)

>sp|Q9VS34|RL18_DROME 60S ribosomal protein L18 OS=Drosophila melanogaster GN=RpL18 PE=1 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/120 (56%), Positives = 86/120 (71%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           G+DI HKYDR+VRRT+PKS+DVYL LLVKLYRFL RRTN KFN+IILKRLFMSKINRPP+
Sbjct: 2   GIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPL 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
           ++ +I RF K   +     V+VGT+ DD R+  +PKLT+       T   R+    G ++
Sbjct: 62  SLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGEVL 121

Drosophila melanogaster (taxid: 7227)

>sp|Q5E973|RL18_BOVIN 60S ribosomal protein L18 OS=Bos taurus GN=RPL18 PE=2 SV=3

 Score =  138 bits (347), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 82/99 (82%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           GVDI H  DR+VRR +PKS+D+YL LLVKLYRFL RRTNS FN+++LKRLFMS+ NRPP+
Sbjct: 2   GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           ++S+++R MK P REG+ AV+VGTI DD R+  +PKL +
Sbjct: 62  SLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKV 100

Bos taurus (taxid: 9913)

>sp|P12001|RL18_RAT 60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=2 SV=2

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/99 (62%), Positives = 81/99 (81%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           GVDI H  DR+VRR +PKS+D+YL LLVKLYRFL RRTNS FN+++LKRLFMS+ NRPP+
Sbjct: 2   GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           ++S+++R MK P RE + AV+VGTI DD R+  +PKL +
Sbjct: 62  SLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKV 100

Rattus norvegicus (taxid: 10116)

>sp|D0VWQ3|RL18_CANFA Ribosomal protein L18 OS=Canis familiaris GN=RPL18 PE=1 SV=2

 Score =  135 bits (340), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/99 (62%), Positives = 81/99 (81%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           GVDI H  DR+VRR +PKS+D+YL LLVKLYRFL RRTNS FN+++LKRLFMS+ NRPP+
Sbjct: 2   GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           ++S+++R MK P RE + AV+VGTI DD R+  +PKL +
Sbjct: 62  SLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKV 100

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
122103773	188	RecName: Full=60S ribosomal protein L18	0.405	0.526	0.989	8e-50
328780603	394	PREDICTED: hypothetical protein LOC55248	0.409	0.253	0.74	2e-37
350398682	400	PREDICTED: hypothetical protein LOC10074	0.409	0.25	0.72	5e-37
340709984	409	PREDICTED: hypothetical protein LOC10064	0.409	0.244	0.73	5e-37
70909737	188	ribosomal protein L18e [Hister sp. APV-2	0.405	0.526	0.717	8e-37
380014771	188	PREDICTED: 60S ribosomal protein L18-lik	0.405	0.526	0.747	9e-37
345485528	410	PREDICTED: hypothetical protein LOC10012	0.495	0.295	0.611	1e-36
332019851	232	60S ribosomal protein L18 [Acromyrmex ec	0.405	0.426	0.757	2e-36
91079322	188	PREDICTED: similar to ribosomal protein	0.491	0.638	0.616	2e-36
322791128	187	hypothetical protein SINV_04174 [Solenop	0.405	0.529	0.737	5e-36

>gi|122103773|sp|Q0PXY6.1|RL18_DIACI RecName: Full=60S ribosomal protein L18 gi|110671444|gb|ABG81973.1| putative ribosomal protein L18e [Diaphorina citri]

 Score =  202 bits (515), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 98/99 (98%), Positives = 99/99 (100%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM
Sbjct: 2   GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLT+
Sbjct: 62  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTV 100

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780603|ref|XP_624859.2| PREDICTED: hypothetical protein LOC552483 [Apis mellifera]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 91/100 (91%)

Query: 35  NGVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPP 94
           +G+DI HK+DR+VRRT+PKS+DVYL LLVKLYRFL RRTNSKFNKIILKRLFMSKI+RPP
Sbjct: 207 SGIDINHKHDRKVRRTEPKSQDVYLRLLVKLYRFLARRTNSKFNKIILKRLFMSKIHRPP 266

Query: 95  MAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           +++++IVRFMKKP RE  +AVIVGT+ DD R++ IPKLT+
Sbjct: 267 ISLARIVRFMKKPGRENAIAVIVGTVTDDARIFEIPKLTV 306

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398682|ref|XP_003485273.1| PREDICTED: hypothetical protein LOC100746406 [Bombus impatiens]

 Score =  160 bits (405), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 91/100 (91%)

Query: 35  NGVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPP 94
           +G+DI HK+DR+VRRT+PKS+DVYL LLVKLYRFL RRTNSKFNKI+LKRLFMSKI+RPP
Sbjct: 213 SGIDINHKHDRKVRRTEPKSQDVYLRLLVKLYRFLARRTNSKFNKIVLKRLFMSKIHRPP 272

Query: 95  MAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           ++++++VRFMKKP RE  +AVIVGT+ DD R++ IPKLT+
Sbjct: 273 ISLARVVRFMKKPGRENAIAVIVGTVTDDARIFEIPKLTV 312

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709984|ref|XP_003393579.1| PREDICTED: hypothetical protein LOC100643724 [Bombus terrestris]

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 91/100 (91%)

Query: 35  NGVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPP 94
           +G+DI HK+DR+VRRT+PKS+DVYL LLVKLYRFL RRTNSKFNKI+LKRLFMSKI+RPP
Sbjct: 222 SGIDINHKHDRKVRRTEPKSQDVYLRLLVKLYRFLARRTNSKFNKIVLKRLFMSKIHRPP 281

Query: 95  MAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           +++++IVRFMKKP RE  +AVIVGT+ DD R++ IPKLT+
Sbjct: 282 ISLARIVRFMKKPGRENAIAVIVGTVTDDARIFEIPKLTV 321

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909737|emb|CAJ17294.1| ribosomal protein L18e [Hister sp. APV-2005]

 Score =  159 bits (403), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 71/99 (71%), Positives = 90/99 (90%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           G+DI HK+DR+VRRT+P+S+DVYL LLVKLYR+L RRTNSKFNKIIL+RLFMS+INR PM
Sbjct: 2   GIDINHKHDRKVRRTEPRSQDVYLRLLVKLYRYLARRTNSKFNKIILRRLFMSRINRAPM 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           ++++IVRFMKKP REG +AV+VGT+ DD R+W +PKLT+
Sbjct: 62  SLARIVRFMKKPGREGLMAVVVGTVTDDQRIWEVPKLTV 100

Source: Hister sp. APV-2005

Species: Hister sp. APV-2005

Genus: Hister

Family: Histeridae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014771|ref|XP_003691391.1| PREDICTED: 60S ribosomal protein L18-like [Apis florea]

 Score =  159 bits (402), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 74/99 (74%), Positives = 90/99 (90%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           G+DI HK+DR+VRRT+PKS+DVYL LLVKLYRFL RRTNSKFNKIILKRLFMSKI+RPP+
Sbjct: 2   GIDINHKHDRKVRRTEPKSQDVYLRLLVKLYRFLARRTNSKFNKIILKRLFMSKIHRPPI 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           ++++IVRFMKKP RE  +AVIVGT+ DD R++ IPKLT+
Sbjct: 62  SLARIVRFMKKPGRENAIAVIVGTVTDDARIFEIPKLTV 100

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485528|ref|XP_001606789.2| PREDICTED: hypothetical protein LOC100123180 [Nasonia vitripennis]

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 96/121 (79%)

Query: 35  NGVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPP 94
           +G+DI HK+DR+VRRT+PKS+DVYL LLVKLYRFL RRTNSKFNKIILKRLFMS+I+RPP
Sbjct: 223 SGIDINHKHDRKVRRTEPKSQDVYLRLLVKLYRFLARRTNSKFNKIILKRLFMSRIHRPP 282

Query: 95  MAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTI 154
           ++++++ RFMKKP RE  +AVIVGT+ DD R++ +PKLT+          GR+    G I
Sbjct: 283 ISLARVTRFMKKPGRENCIAVIVGTVTDDARIFEVPKLTVCALRVTEKARGRILKAGGEI 342

Query: 155 V 155
           +
Sbjct: 343 I 343

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019851|gb|EGI60312.1| 60S ribosomal protein L18 [Acromyrmex echinatior]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 75/99 (75%), Positives = 90/99 (90%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           G+DI HK+DR+VRRT+PKS+DVYL LLVKLYRFL RRTNSKFNKIILKRLFMSKI+RPP+
Sbjct: 46  GIDINHKHDRKVRRTEPKSQDVYLRLLVKLYRFLARRTNSKFNKIILKRLFMSKIHRPPI 105

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           ++++IVRFMKKP RE  VAVIVGTI DD R++ +PKLT+
Sbjct: 106 SLARIVRFMKKPNRENCVAVIVGTITDDARIFEVPKLTV 144

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079322|ref|XP_968042.1| PREDICTED: similar to ribosomal protein L18e [Tribolium castaneum] gi|270004338|gb|EFA00786.1| hypothetical protein TcasGA2_TC003672 [Tribolium castaneum]

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 94/120 (78%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           G+DI HK+DR+VRRT+PKS+DVYL LLVKLYR+L RRT SKFNKIILKRLFMSKIN+PP+
Sbjct: 2   GIDINHKHDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGSKFNKIILKRLFMSKINKPPI 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
           +++++VR MKKP REG  AVIVGT+ DD R+W +PKL+I       T   R+    G ++
Sbjct: 62  SLARVVRAMKKPGREGLTAVIVGTVTDDARIWEVPKLSICALRVTGTARARILKAGGEVI 121

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322791128|gb|EFZ15690.1| hypothetical protein SINV_04174 [Solenopsis invicta]

 Score =  157 bits (396), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 90/99 (90%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           G+DI HK+DR+VRRT+PKS+DVYL LLVKLYRFL RRTNSKFNKIILKRLFMS+I+RPP+
Sbjct: 1   GIDINHKHDRKVRRTEPKSQDVYLRLLVKLYRFLARRTNSKFNKIILKRLFMSRIHRPPI 60

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           ++++IVRFMKKP RE  VAVIVG++ DD R++ IPKLT+
Sbjct: 61  SVARIVRFMKKPGRENCVAVIVGSVTDDARIFQIPKLTV 99

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
FB|FBgn0035753	188	RpL18 "Ribosomal protein L18"	0.491	0.638	0.566	1.1e-32
UNIPROTKB|Q2M0G4	189	RpL18 "60S ribosomal protein L	0.491	0.634	0.566	1.1e-32
UNIPROTKB|Q5E973	188	RPL18 "60S ribosomal protein L	0.491	0.638	0.55	1.3e-31
UNIPROTKB|I3L6F1	188	RPL18 "60S ribosomal protein L	0.491	0.638	0.55	1.3e-31
UNIPROTKB|I3LFL4	169	RPL18 "60S ribosomal protein L	0.491	0.710	0.55	1.3e-31
UNIPROTKB|D0VWQ3	188	RPL18 "Ribosomal protein L18"	0.491	0.638	0.541	5.4e-31
RGD|621182	188	Rpl18 "ribosomal protein L18"	0.491	0.638	0.541	5.4e-31
MGI|MGI:98003	188	Rpl18 "ribosomal protein L18"	0.491	0.638	0.533	6.9e-31
UNIPROTKB|G3V203	164	RPL18 "60S ribosomal protein L	0.491	0.731	0.541	8.8e-31
UNIPROTKB|J3QQ67	190	RPL18 "60S ribosomal protein L	0.491	0.631	0.541	8.8e-31

FB|FBgn0035753 RpL18 "Ribosomal protein L18" [Drosophila melanogaster (taxid:7227)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 68/120 (56%), Positives = 86/120 (71%)

Query:    36 GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
             G+DI HKYDR+VRRT+PKS+DVYL LLVKLYRFL RRTN KFN+IILKRLFMSKINRPP+
Sbjct:     2 GIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPL 61

Query:    96 AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
             ++ +I RF K   +     V+VGT+ DD R+  +PKLT+       T   R+    G ++
Sbjct:    62 SLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGEVL 121

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005840 "ribosome" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

UNIPROTKB|Q2M0G4 RpL18 "60S ribosomal protein L18" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 68/120 (56%), Positives = 86/120 (71%)

Query:    36 GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
             G+DI HKYDR+VRRT+PKS+DVYL LLVKLYRFL RRTN KFN+IILKRLFMSKINRPP+
Sbjct:     3 GIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPL 62

Query:    96 AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
             ++ +I RF K   +     V+VGT+ DD R+  +PKLT+       T   R+    G ++
Sbjct:    63 SLQRIARFFKAANQPESTVVVVGTVTDDARLLVVPKLTLCALHVTQTARERILKAGGEVL 122

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5E973 RPL18 "60S ribosomal protein L18" [Bos taurus (taxid:9913)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 66/120 (55%), Positives = 87/120 (72%)

Query:    36 GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
             GVDI H  DR+VRR +PKS+D+YL LLVKLYRFL RRTNS FN+++LKRLFMS+ NRPP+
Sbjct:     2 GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query:    96 AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
             ++S+++R MK P REG+ AV+VGTI DD R+  +PKL +           R+    G I+
Sbjct:    62 SLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGKIL 121

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|I3L6F1 RPL18 "60S ribosomal protein L18" [Sus scrofa (taxid:9823)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 66/120 (55%), Positives = 87/120 (72%)

Query:    36 GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
             GVDI H  DR+VRR +PKS+D+YL LLVKLYRFL RRTNS FN+++LKRLFMS+ NRPP+
Sbjct:     2 GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query:    96 AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
             ++S+++R MK P REG+ AV+VGTI DD R+  +PKL +           R+    G I+
Sbjct:    62 SLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGKIL 121

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|I3LFL4 RPL18 "60S ribosomal protein L18" [Sus scrofa (taxid:9823)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 66/120 (55%), Positives = 87/120 (72%)

Query:    36 GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
             GVDI H  DR+VRR +PKS+D+YL LLVKLYRFL RRTNS FN+++LKRLFMS+ NRPP+
Sbjct:     2 GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query:    96 AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
             ++S+++R MK P REG+ AV+VGTI DD R+  +PKL +           R+    G I+
Sbjct:    62 SLSRMIRKMKLPGREGKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGKIL 121

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|D0VWQ3 RPL18 "Ribosomal protein L18" [Canis lupus familiaris (taxid:9615)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 65/120 (54%), Positives = 86/120 (71%)

Query:    36 GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
             GVDI H  DR+VRR +PKS+D+YL LLVKLYRFL RRTNS FN+++LKRLFMS+ NRPP+
Sbjct:     2 GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query:    96 AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
             ++S+++R MK P RE + AV+VGTI DD R+  +PKL +           R+    G I+
Sbjct:    62 SLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARSRILKAGGKIL 121

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|621182 Rpl18 "ribosomal protein L18" [Rattus norvegicus (taxid:10116)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 65/120 (54%), Positives = 86/120 (71%)

Query:    36 GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
             GVDI H  DR+VRR +PKS+D+YL LLVKLYRFL RRTNS FN+++LKRLFMS+ NRPP+
Sbjct:     2 GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query:    96 AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
             ++S+++R MK P RE + AV+VGTI DD R+  +PKL +           R+    G I+
Sbjct:    62 SLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKIL 121

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

MGI|MGI:98003 Rpl18 "ribosomal protein L18" [Mus musculus (taxid:10090)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 64/120 (53%), Positives = 86/120 (71%)

Query:    36 GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
             GVDI H  DR+VRR +PKS+D+YL LLVKLYRFL RRTNS FN+++LKRLFMS+ NRPP+
Sbjct:     2 GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query:    96 AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
             ++S+++R MK P RE + AV+VGT+ DD R+  +PKL +           R+    G I+
Sbjct:    62 SLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKIL 121

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|G3V203 RPL18 "60S ribosomal protein L18" [Homo sapiens (taxid:9606)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 65/120 (54%), Positives = 86/120 (71%)

Query:    36 GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
             GVDI H  DR+VRR +PKS+D+YL LLVKLYRFL RRTNS FN+++LKRLFMS+ NRPP+
Sbjct:     2 GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query:    96 AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
             ++S+++R MK P RE + AV+VGTI DD R+  +PKL +           R+    G I+
Sbjct:    62 SLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKIL 121

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|J3QQ67 RPL18 "60S ribosomal protein L18" [Homo sapiens (taxid:9606)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 65/120 (54%), Positives = 86/120 (71%)

Query:    36 GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
             GVDI H  DR+VRR +PKS+D+YL LLVKLYRFL RRTNS FN+++LKRLFMS+ NRPP+
Sbjct:     4 GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 63

Query:    96 AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV 155
             ++S+++R MK P RE + AV+VGTI DD R+  +PKL +           R+    G I+
Sbjct:    64 SLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKIL 123

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P35980	RL18_MOUSE	No assigned EC number	0.6161	0.4057	0.5265	yes	N/A
P69091	RL18_ORENI	No assigned EC number	0.6060	0.4057	0.5265	yes	N/A
Q54VZ4	RL18_DICDI	No assigned EC number	0.5151	0.4016	0.5414	yes	N/A
D0VWQ3	RL18_CANFA	No assigned EC number	0.6262	0.4057	0.5265	yes	N/A
Q5E973	RL18_BOVIN	No assigned EC number	0.6363	0.4057	0.5265	yes	N/A
Q7QJM5	RL18_ANOGA	No assigned EC number	0.58	0.4057	0.5238	yes	N/A
Q8TFH1	RL18B_SCHPO	No assigned EC number	0.5648	0.4262	0.5561	yes	N/A
Q9VS34	RL18_DROME	No assigned EC number	0.5666	0.4918	0.6382	yes	N/A
Q940B0	RL183_ARATH	No assigned EC number	0.5277	0.4221	0.5508	yes	N/A
Q0PXY6	RL18_DIACI	No assigned EC number	0.9898	0.4057	0.5265	N/A	N/A
P0CX50	RL18B_YEAST	No assigned EC number	0.5049	0.4098	0.5376	yes	N/A
Q2M0G4	RL18_DROPS	No assigned EC number	0.5619	0.4959	0.6402	yes	N/A
P42791	RL182_ARATH	No assigned EC number	0.5462	0.4221	0.5508	yes	N/A
Q07020	RL18_HUMAN	No assigned EC number	0.6262	0.4057	0.5265	yes	N/A
Q10192	RL18A_SCHPO	No assigned EC number	0.5462	0.4262	0.5561	yes	N/A
P12001	RL18_RAT	No assigned EC number	0.6262	0.4057	0.5265	yes	N/A
P0CX49	RL18A_YEAST	No assigned EC number	0.5049	0.4098	0.5376	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	244
PTZ00469	187	PTZ00469, PTZ00469, 60S ribosomal subunit protein	2e-18
pfam00828	122	pfam00828, Ribosomal_L18e, Ribosomal protein L18e/	2e-18
PTZ00195	198	PTZ00195, PTZ00195, 60S ribosomal protein L18; Pro	2e-18
COG1727	122	COG1727, RPL18A, Ribosomal protein L18E [Translati	6e-17
PTZ00469	187	PTZ00469, PTZ00469, 60S ribosomal subunit protein	7e-04

>gnl|CDD|185648 PTZ00469, PTZ00469, 60S ribosomal subunit protein L18; Provisional

 Score = 80.1 bits (197), Expect = 2e-18
 Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 2/94 (2%)

Query: 54  SKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRV 113
           SK+ YL LLVKLYRFL RRTN+ FNKII KRL M K  RPP+++SK+ R M   +    V
Sbjct: 21  SKNPYLRLLVKLYRFLARRTNANFNKIIAKRLIMPKRFRPPLSLSKLHRHMA--SYPDDV 78

Query: 114 AVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRV 147
           AV+VG+I DD R++   KL +       T   R+
Sbjct: 79  AVVVGSITDDKRLYDCKKLKVCALRFTETARKRI 112

Length = 187

>gnl|CDD|216140 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15

 Score = 78.0 bits (193), Expect = 2e-18
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 37  VDICHKYDRRVRRTKPKSKDV-YLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           +       R+  R +   +   +    V LYR L +R          ++LF S+ NRPP+
Sbjct: 3   IGKTRGRGRKGGRGRAGGQKHHFEGGQVPLYRRLGKRGF--------RKLFKSRKNRPPV 54

Query: 96  AISKIVRFMKK--PTREGRVAVIVGTIVDDPRMWTIPKLTI 134
            +SK+ R M K     +G   V+VGT+ DD ++    +LT 
Sbjct: 55  NLSKLDRKMLKDGEEVDGETLVVVGTVTDDVKVLGNGELTK 95

This family includes eukaryotic L18 as well as prokaryotic L15. Length = 122

>gnl|CDD|140222 PTZ00195, PTZ00195, 60S ribosomal protein L18; Provisional

 Score = 79.7 bits (196), Expect = 2e-18
 Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 8/103 (7%)

Query: 45  RRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFM 104
            RV R    S + Y++LL+KLY+FL +RT+S FNK++ +RL  S+ NR P+++S+I   M
Sbjct: 12  SRVVRHHTYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVM 71

Query: 105 KKPT------REGRVAVIVGTIVDDPRMWTIPKLTI--VRFMK 139
           K+        ++  +AV+VG ++DD RM  IP + +  +RF K
Sbjct: 72  KRKAVFTAKGKKAPIAVVVGDVLDDVRMARIPAMRVCALRFSK 114

Length = 198

>gnl|CDD|224641 COG1727, RPL18A, Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]

 Score = 73.9 bits (182), Expect = 6e-17
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 49  RTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPT 108
             K  S +VYL  L++  R   RR+++   K + +RL   + NR  + +SKI R+     
Sbjct: 3   MKKTGSTNVYLRKLIRFLRKAARRSSAPIWKDVAERLEKPRRNRAEVNVSKINRY----A 58

Query: 109 REGRVAVIVGTIVDDPRMWTIPKLTI--VRFMKK 140
           +EG   V+ G ++ D +     K+T+  +RF K 
Sbjct: 59  KEGDTVVVPGKVLGDGK--LDKKVTVAALRFSKT 90

Length = 122

>gnl|CDD|185648 PTZ00469, PTZ00469, 60S ribosomal subunit protein L18; Provisional

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 19/25 (76%), Positives = 20/25 (80%)

Query: 168 LYRFLTRRTNSKFNKIILKRLFMSK 192
           LYRFL RRTN+ FNKII KRL M K
Sbjct: 32  LYRFLARRTNANFNKIIAKRLIMPK 56

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
PTZ00195	198	60S ribosomal protein L18; Provisional	100.0
PTZ00469	187	60S ribosomal subunit protein L18; Provisional	100.0
KOG1714|consensus	188		100.0
COG1727	122	RPL18A Ribosomal protein L18E [Translation, riboso	100.0
PRK04005	111	50S ribosomal protein L18e; Provisional	99.94
KOG1714|consensus	188		99.52
PF00828	129	Ribosomal_L18e: Ribosomal protein L18e/L15; InterP	99.42
PTZ00195	198	60S ribosomal protein L18; Provisional	99.35
PTZ00469	187	60S ribosomal subunit protein L18; Provisional	99.16
PRK05592	146	rplO 50S ribosomal protein L15; Reviewed	98.58
PRK06419	148	rpl15p 50S ribosomal protein L15P; Reviewed	98.53
TIGR01071	145	rplO_bact ribosomal protein L15, bacterial/organel	98.35
PTZ00160	147	60S ribosomal protein L27a; Provisional	97.98
COG1727	122	RPL18A Ribosomal protein L18E [Translation, riboso	97.78
COG0200	152	RplO Ribosomal protein L15 [Translation, ribosomal	97.58
PRK04005	111	50S ribosomal protein L18e; Provisional	96.23
KOG1742|consensus	147		89.34
KOG0846|consensus	274		83.44

>PTZ00195 60S ribosomal protein L18; Provisional

Probab=100.00  E-value=6.6e-53  Score=367.15  Aligned_cols=131  Identities=33%  Similarity=0.559  Sum_probs=127.6

Q ss_pred             ceeecc-CcccccccccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhc------CC
Q psy2274          35 NGVDIC-HKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMK------KP  107 (244)
Q Consensus        35 MGiD~~-~~~~kk~~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k------~~  107 (244)
                      |||||+ ++++++++|+.|+|+||||++||++|+|+||+|+|+||++||+||+||++||||||||||++||+      ++
T Consensus         1 mgid~~~~~~~~~~~r~~pkstN~yL~lLVklyrflaRrt~a~fnk~VakRL~~sr~nRppVsLSrI~r~~k~~d~~~~~   80 (198)
T PTZ00195          1 MGVDLTGISKKSRVVRHHTYSTNPYIKLLIKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAK   80 (198)
T ss_pred             CceecccccccccccccCCCCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcccccCCceeHHHHHHHHhcccccccc
Confidence            999998 67899999999999999999999999999999999999999999999999999999999999997      36


Q ss_pred             CCCCCEEEEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274         108 TREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK  165 (244)
Q Consensus       108 ~~egkivVVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK  165 (244)
                      +++|+|||||||||||++|.+||||+||||+||++|++||++|||+|+|||||++ +|+
T Consensus        81 ~~~~k~~VVvGkVtdd~rl~~vPkvtVaALrfS~tAr~rI~kAGGe~lT~dQLa~~~Pk  139 (198)
T PTZ00195         81 GKKAPIAVVVGDVLDDVRMARIPAMRVCALRFSKSARQSIVAAGGECLTFDQLAMIAPT  139 (198)
T ss_pred             CCCCcEEEEEeeEcCCccccccCceEEEEEecCHHHHHHHHHhCCEEEeHHHHHHHCCC
Confidence            7899999999999999999999999999999999999999999999999999998 998

>PTZ00469 60S ribosomal subunit protein L18; Provisional

Probab=100.00  E-value=4.4e-52  Score=359.72  Aligned_cols=129  Identities=40%  Similarity=0.567  Sum_probs=126.3

Q ss_pred             ceeecc-CcccccccccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCE
Q psy2274          35 NGVDIC-HKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRV  113 (244)
Q Consensus        35 MGiD~~-~~~~kk~~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egki  113 (244)
                      |||||+ |++++|++|+.|+|+||||++||++|+|+||+|+|+||++||+||+||++||||||||||++||+  ++||||
T Consensus         1 mgid~~~~~~~~k~~r~~~~stN~yL~~Lik~yk~larrt~a~fwk~Va~RL~~srrnr~pVnLSkI~r~~~--~ke~~~   78 (187)
T PTZ00469          1 MGIALKNVGRIKKHGRKNLVSKNPYLRLLVKLYRFLARRTNANFNKIIAKRLIMPKRFRPPLSLSKLHRHMA--SYPDDV   78 (187)
T ss_pred             CceecccCccccCCCccCCCCCCHHHHHHHHHHHHHHHhhCChHHHHHHHHHhcccccCCceeHHHHHHHhc--cCCCCE
Confidence            999998 77999999999999999999999999999999999999999999999999999999999999995  679999


Q ss_pred             EEEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274         114 AVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK  165 (244)
Q Consensus       114 vVVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK  165 (244)
                      |||||||||||+|.+||||+||||+||++|++||++|||+|+|||||++ ||+
T Consensus        79 ~VVvGkVl~dgrl~~vpkvtVaAL~fS~~Ar~kI~~AGGe~lT~dqLa~~~P~  131 (187)
T PTZ00469         79 AVVVGSITDDKRLYDCKKLKVCALRFTETARKRILDAGGECLTFDQLALKYPT  131 (187)
T ss_pred             EEEEeeEccCccccccCceEEEEEecCHHHHHHHHHhCCEEEeHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999999998 998

>KOG1714|consensus

Probab=100.00  E-value=1.4e-45  Score=317.73  Aligned_cols=131  Identities=51%  Similarity=0.819  Sum_probs=129.7

Q ss_pred             ceeeccCcccccccccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEE
Q psy2274          35 NGVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVA  114 (244)
Q Consensus        35 MGiD~~~~~~kk~~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkiv  114 (244)
                      |||||.|++++++.|++|+|+|+||++|+++|+|++|+|++.||++|++|||||++||||+|||+|+++|+.+++|+||+
T Consensus         1 mg~di~~~~~~k~~RtePkS~dvYLrllvkly~flarrT~s~fn~vvLKrLfmSk~nrpPlsls~iir~~k~~~~enKta   80 (188)
T KOG1714|consen    1 MGIDILHNKSRKVRRTEPKSQDVYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSKTNRPPLSLSRIIRKMKLPGQENKTA   80 (188)
T ss_pred             CCccccCCccccccccCCCCccHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhhcccCCCcCHHHHHHHhhccCccCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274         115 VIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK  165 (244)
Q Consensus       115 VVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK  165 (244)
                      |||||||||.++.+|||++||||+||++|+++|+++||+|+|+|||+. -|+
T Consensus        81 VVVgTvtdD~rv~~vPkl~v~al~~t~~ar~rI~kagg~i~TlDQLal~sP~  132 (188)
T KOG1714|consen   81 VVVGTVTDDLRVQEVPKLKVAALRFTKGARARILKAGGEILTLDQLALDSPK  132 (188)
T ss_pred             EEEeeecccceeeecccceeeeeecccchhhhhhccCceEEeeHHhcccCCC
Confidence            999999999999999999999999999999999999999999999998 888

>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2e-42  Score=282.66  Aligned_cols=112  Identities=27%  Similarity=0.379  Sum_probs=108.9

Q ss_pred             cccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEEEEEeeeecCCccc
Q psy2274          48 RRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMW  127 (244)
Q Consensus        48 ~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkivVVvGKVldDgrL~  127 (244)
                      .++.|+|+|+||+.||++|+++||+++++||++||+||++|||+|+|||||||++|++    |||++||||||||||.+.
T Consensus         2 ~~~~t~~tN~~L~~Li~~l~~~ar~~~a~iwk~vaerL~~prr~ra~VnlsKI~r~ak----~~d~vvVpGkVLg~g~l~   77 (122)
T COG1727           2 SMKKTGSTNVYLRKLIRFLRKAARRSSAPIWKDVAERLEKPRRNRAEVNVSKINRYAK----EGDTVVVPGKVLGDGKLD   77 (122)
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHhcccccCCceeHHHHHhhcC----CCCEEEEeeeEecCcccc
Confidence            3678999999999999999999999999999999999999999999999999999999    999999999999999777


Q ss_pred             ccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274         128 TIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK  165 (244)
Q Consensus       128 eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK  165 (244)
                        ||++|+||+||++|++||+.|||+|+|++||++ ||+
T Consensus        78 --~kVtVaAl~FS~~A~~KI~~aGGe~~tl~el~e~nPk  114 (122)
T COG1727          78 --KKVTVAALRFSKTAREKIEEAGGECLTLEELAERNPK  114 (122)
T ss_pred             --cceEEEEEecCHHHHHHHHHcCCeEeeHHHHHHHCCC
Confidence              799999999999999999999999999999999 998

>PRK04005 50S ribosomal protein L18e; Provisional

Probab=99.94  E-value=1e-26  Score=187.59  Aligned_cols=102  Identities=22%  Similarity=0.297  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEEEEEeeeecCCcccccCceeEEEe
Q psy2274          58 YLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRF  137 (244)
Q Consensus        58 yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkivVVvGKVldDgrL~eVPKltV~AL  137 (244)
                      +++.|+++|+++||++++|||++|++||+||++.+++|||++|++++.    +|+++++|+||||+|++.  ++++|.|.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~v~~rl~~~r~~y~vVNL~~L~~~~~----~~~vv~~~~KVLg~G~l~--k~l~V~a~   74 (111)
T PRK04005          1 RLRKLIRDLKKASRENGAPIWKDVAERLEKPRRRRAEVNLSKINRYAK----EGDTVVVPGKVLGSGKLD--HKVTVAAL   74 (111)
T ss_pred             CHHHHHHHHHHHHhhhCCcHHHHHHHHHhCCCCccceEEHHHHHhhcc----CCCEEEEeeEEEcCceEc--CCEEEEEe
Confidence            578999999999999999999999999999999999999999999886    678999999999999998  59999999


Q ss_pred             eeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274         138 MKKPTREGRVAVIVGTIVDDPRMWT-IPK  165 (244)
Q Consensus       138 ~fS~sAr~KI~kAGGki~TidrL~e-NPK  165 (244)
                      .||++|+++|+++||++..++||++ ||+
T Consensus        75 ~~Sk~A~ekIe~aGG~v~~~~~l~~~~p~  103 (111)
T PRK04005         75 SFSETAKEKIEEAGGKALTIEELVEENPK  103 (111)
T ss_pred             ecCHHHHHHHHHcCCEEEEHHHHHHHCCC
Confidence            9999999999999999999999998 998

>KOG1714|consensus

Probab=99.52  E-value=1.7e-15  Score=131.57  Aligned_cols=58  Identities=50%  Similarity=0.685  Sum_probs=51.5

Q ss_pred             cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcC-CCCcccccccccccccchh
Q psy2274         166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVK-PTNTLALLPVFPTVTRKLT  223 (244)
Q Consensus       166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~-~~~~~~~~~v~~tvt~~~~  223 (244)
                      .+||+||+|||+|.||++|||||||||+||    +|+++..|+ |...-.+-||+||||||+.
T Consensus        29 vkly~flarrT~s~fn~vvLKrLfmSk~nrpPlsls~iir~~k~~~~enKtaVVVgTvtdD~r   91 (188)
T KOG1714|consen   29 VKLYRFLARRTNSTFNQVVLKRLFMSKTNRPPLSLSRIIRKMKLPGQENKTAVVVGTVTDDLR   91 (188)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHhhhcccCCCcCHHHHHHHhhccCccCceEEEEeeecccce
Confidence            699999999999999999999999999999    999999998 4333346699999999984

>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.42  E-value=5.1e-13  Score=107.61  Aligned_cols=105  Identities=22%  Similarity=0.319  Sum_probs=85.2

Q ss_pred             ccccccC---CCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCC--C---CCCCEEEE
Q psy2274          45 RRVRRTK---PKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKP--T---REGRVAVI  116 (244)
Q Consensus        45 kk~~Rk~---~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~--~---~egkivVV  116 (244)
                      .|..+.+   .+..+.+..-...+|+++.++   .|+....   .+++.++++|||++|.+++..-  .   .+++++++
T Consensus        11 ~kG~~~rsG~~~~~~~feggq~pl~rr~pK~---Gf~~~~~---~~~~~~~~~vnL~~L~~~i~~~~~~~~~~~~~~~~~   84 (129)
T PF00828_consen   11 HKGGRGRSGGHKHRPGFEGGQMPLYRRLPKR---GFNNPHL---RKNRREYPPVNLSKLQELIEKLKIDGTEIDGKILVD   84 (129)
T ss_dssp             SSSSSSSTTTSSTSSHHHHHHSHHHHHSSSS---SHHHCCH---CSGTCCCEEEEHHHHHHHTTTSSSSSCECTTSEEEE
T ss_pred             CCCCCCCCCCCCCCchhcccccccccccCcc---ccccccc---ccCcceeEeeeHHHHHHHHHhccccccccCCceeee
Confidence            3444444   467788999999999999876   4554332   7788999999999999987631  1   26799999


Q ss_pred             Ee------eeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeeh
Q psy2274         117 VG------TIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDD  157 (244)
Q Consensus       117 vG------KVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~Ti  157 (244)
                      +|      |||++|.+.  .+|+|+|..||++|+++|++|||+|++|
T Consensus        85 ~~~~~~~~KvLg~G~l~--~~l~I~a~~~S~~A~ekIe~aGG~v~~~  129 (129)
T PF00828_consen   85 AGLIKGYVKVLGKGELT--KPLTIKAHRFSKSAKEKIEAAGGEVVTF  129 (129)
T ss_dssp             CCEESSEEEEESSSSSS--SSEEEEESEETHHHHHHHHHTSEEEEEH
T ss_pred             ccccccceeeeccCCcc--cceEEEEEecCHHHHHHHHHcCCEEEeC
Confidence            99      889999985  3599999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents both L15 and L18e ribosomal proteins, which share a common structure consisting mainly of parallel beta sheets (beta-alpha-beta units) with a core of three turns of irregular (beta-beta-alpha)n superhelix [, ].; PDB: 3O58_Y 1S1I_V 3O5H_Y 3IZS_O 3IZR_R 2OTL_L 1M1K_M 3G6E_L 1VQ9_L 1YIT_L ....

>PTZ00195 60S ribosomal protein L18; Provisional

Probab=99.35  E-value=1.3e-13  Score=121.36  Aligned_cols=58  Identities=31%  Similarity=0.508  Sum_probs=51.8

Q ss_pred             cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcC-------CCCcccccccccccccchh
Q psy2274         166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVK-------PTNTLALLPVFPTVTRKLT  223 (244)
Q Consensus       166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~-------~~~~~~~~~v~~tvt~~~~  223 (244)
                      +++|+||+|||+++||++|++|||||++||    +|+++..|+       +..+-.+.||+||||+|--
T Consensus        30 VklyrflaRrt~a~fnk~VakRL~~sr~nRppVsLSrI~r~~k~~d~~~~~~~~~k~~VVvGkVtdd~r   98 (198)
T PTZ00195         30 IKLYKFLAKRTSSGFNKVVYQRLIKSRSNRAPISLSRIAVVMKRKAVFTAKGKKAPIAVVVGDVLDDVR   98 (198)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHhcccccCCceeHHHHHHHHhccccccccCCCCcEEEEEeeEcCCcc
Confidence            799999999999999999999999999999    999999996       3334447899999999964

>PTZ00469 60S ribosomal subunit protein L18; Provisional

Probab=99.16  E-value=5.1e-12  Score=110.53  Aligned_cols=57  Identities=39%  Similarity=0.528  Sum_probs=51.6

Q ss_pred             cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcC-CCCcccccccccccccchhh
Q psy2274         166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVK-PTNTLALLPVFPTVTRKLTS  224 (244)
Q Consensus       166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~-~~~~~~~~~v~~tvt~~~~~  224 (244)
                      +++|+||+|+|+++||+.|++||+||++||    +|+++..|+ .+|+  +.||+||||+|-.-
T Consensus        30 ik~yk~larrt~a~fwk~Va~RL~~srrnr~pVnLSkI~r~~~~ke~~--~~VVvGkVl~dgrl   91 (187)
T PTZ00469         30 VKLYRFLARRTNANFNKIIAKRLIMPKRFRPPLSLSKLHRHMASYPDD--VAVVVGSITDDKRL   91 (187)
T ss_pred             HHHHHHHHHhhCChHHHHHHHHHhcccccCCceeHHHHHHHhccCCCC--EEEEEeeEccCccc
Confidence            799999999999999999999999999999    999999994 5665  45999999999653

>PRK05592 rplO 50S ribosomal protein L15; Reviewed

Probab=98.58  E-value=1.4e-08  Score=85.16  Aligned_cols=61  Identities=13%  Similarity=0.204  Sum_probs=52.6

Q ss_pred             cccCCCcccHHHHHHHhcCCCCCCCEE---------EE-----EeeeecCCcccccCceeEEEeeeccchhhhhhhcCcE
Q psy2274          88 SKINRPPMAISKIVRFMKKPTREGRVA---------VI-----VGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGT  153 (244)
Q Consensus        88 srrnR~pVnLSKI~R~~k~~~~egkiv---------VV-----vGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGk  153 (244)
                      .+..+.+|||++|+++ .    ++++|         +|     +.|||++|.|.  .+++|.|..||++|+++|++|||+
T Consensus        70 ~~~~y~~VNL~~L~~~-~----~~~~I~~~~L~~~gli~~~~~~vKvLg~G~l~--~~i~I~a~~~S~sA~e~IE~aGG~  142 (146)
T PRK05592         70 FRKEYAVVNLGDLNKF-E----EGTEVTLEALKAAGLIRKNIKGVKVLGNGELT--KKLTVKAHKFSKSAKEAIEAAGGK  142 (146)
T ss_pred             CcceEEEEeHHHhhcc-C----CCCeECHHHHHHCCcccCCCcceEEEecCccc--cCEEEEEEccCHHHHHHHHHcCCE
Confidence            3678899999999973 2    45566         66     89999999987  489999999999999999999999


Q ss_pred             Ee
Q psy2274         154 IV  155 (244)
Q Consensus       154 i~  155 (244)
                      |.
T Consensus       143 v~  144 (146)
T PRK05592        143 VE  144 (146)
T ss_pred             EE
Confidence            85

>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed

Probab=98.53  E-value=1.1e-07  Score=80.02  Aligned_cols=68  Identities=9%  Similarity=0.107  Sum_probs=54.2

Q ss_pred             cCCCcccHHHHHHHhc----C--CCCCCCEEEE------EeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeeh
Q psy2274          90 INRPPMAISKIVRFMK----K--PTREGRVAVI------VGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDD  157 (244)
Q Consensus        90 rnR~pVnLSKI~R~~k----~--~~~egkivVV------vGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~Ti  157 (244)
                      ...++|||++|..+..    .  -..+++..||      +.|||+.|.|..  +++|-|-.||++|+++|+.|||+|+..
T Consensus        68 ~~~~~INL~~L~~l~~~l~~~g~i~~~~~~~vid~~~~g~~KVLG~G~l~~--pl~Vka~~fS~~A~ekIe~aGG~v~l~  145 (148)
T PRK06419         68 KEVSTINVGELDELADLLKAEGKAEEEDGKIVVDLTELGYDKVLGGGKVTR--PLVIKADAFSEKAIEKIEAAGGEVVLS  145 (148)
T ss_pred             ceeeeEEHHHHHHhHHHHHHCCcccccCCcceeeeccCCceEEeCCCccCc--CEEEEEeccCHHHHHHHHHcCCEEEEe
Confidence            4569999999998761    0  1124445555      579999999874  899999999999999999999999876


Q ss_pred             hh
Q psy2274         158 PR  159 (244)
Q Consensus       158 dr  159 (244)
                      ++
T Consensus       146 ~~  147 (148)
T PRK06419        146 EE  147 (148)
T ss_pred             ec
Confidence            64

>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle

Probab=98.35  E-value=5.2e-07  Score=75.29  Aligned_cols=60  Identities=13%  Similarity=0.296  Sum_probs=49.9

Q ss_pred             ccCCCcccHHHHHHHhcCCCCCCCEE---------EEE-----eeeecCCcccccCceeEEEeeeccchhhhhhhcCcEE
Q psy2274          89 KINRPPMAISKIVRFMKKPTREGRVA---------VIV-----GTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTI  154 (244)
Q Consensus        89 rrnR~pVnLSKI~R~~k~~~~egkiv---------VVv-----GKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki  154 (244)
                      +....+|||++|+++..    ++..+         ||.     -|||++|.+..  +++|.|..||++|+++|+.|||+|
T Consensus        71 ~~~~~~VNL~~L~~~~~----~g~~i~~~~L~~~gli~~~~~~vKvLg~G~l~~--~l~I~a~~~S~sA~ekIE~aGG~v  144 (145)
T TIGR01071        71 KKEYAEVNLGKLAKLFP----NGEVVTLETLKEKGLITKKIKFVKVLGNGKLTK--PLTVKAHRVSKSAKAAIEAAGGSV  144 (145)
T ss_pred             CcceeEEEHHHHhhhhh----cCCEecHHHHhhCccCcCCCCceEEeCCCCcCc--CEEEEEEEECHHHHHHHHHcCCEE
Confidence            46778999999998865    33333         343     58999999874  899999999999999999999998

>PTZ00160 60S ribosomal protein L27a; Provisional

Probab=97.98  E-value=9.5e-06  Score=68.86  Aligned_cols=63  Identities=11%  Similarity=0.187  Sum_probs=47.4

Q ss_pred             CcccHHHHHHHhcC------CCCCCCEEEEE------eeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEee
Q psy2274          93 PPMAISKIVRFMKK------PTREGRVAVIV------GTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVD  156 (244)
Q Consensus        93 ~pVnLSKI~R~~k~------~~~egkivVVv------GKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~T  156 (244)
                      ++|||.+|......      ...+++..||-      -|||++|.|.. .+++|.|..||++|+++|+.+||+|+-
T Consensus        71 ~~INl~~L~~lv~~~~~~~~a~~~~~~~vIDl~~~g~~KVLG~G~l~~-~~v~Vka~~~Sk~A~ekIe~aGG~v~l  145 (147)
T PTZ00160         71 PTINVDKLWSLVPEETRYKYAKKGDKAPVIDVTKAGYFKVLGKGHLPK-QPVIVKARYFSKKAEKKIKAVGGACVL  145 (147)
T ss_pred             ceeEHHHHHHHhHHHHHHhhhhccCCceEEEeeccCceEEecCCeEcC-ccEEEEEeecCHHHHHHHHHcCCEEEE
Confidence            77788888665321      01244545542      58999999843 489999999999999999999999964

>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]

Probab=97.78  E-value=5.6e-06  Score=68.76  Aligned_cols=54  Identities=22%  Similarity=0.169  Sum_probs=47.8

Q ss_pred             cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcCCCCcccccccccccccch
Q psy2274         166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVKPTNTLALLPVFPTVTRKL  222 (244)
Q Consensus       166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~~~~~~~~~~v~~tvt~~~  222 (244)
                      +..|+++||+++++|++.|++||+++|.||    ||.+....++.|.   .||.|+|++|-
T Consensus        17 i~~l~~~ar~~~a~iwk~vaerL~~prr~ra~VnlsKI~r~ak~~d~---vvVpGkVLg~g   74 (122)
T COG1727          17 IRFLRKAARRSSAPIWKDVAERLEKPRRNRAEVNVSKINRYAKEGDT---VVVPGKVLGDG   74 (122)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHhcccccCCceeHHHHHhhcCCCCE---EEEeeeEecCc
Confidence            678999999999999999999999999999    8988888775554   68889999874

>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=4.7e-05  Score=65.03  Aligned_cols=66  Identities=5%  Similarity=0.082  Sum_probs=50.2

Q ss_pred             CCCcccHHHHHHHhcCCC-------CCCCEEEE---EeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeeh
Q psy2274          91 NRPPMAISKIVRFMKKPT-------REGRVAVI---VGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDD  157 (244)
Q Consensus        91 nR~pVnLSKI~R~~k~~~-------~egkivVV---vGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~Ti  157 (244)
                      .+++||+.+|+.......       .+.++|+.   .-|||++|+|..-..+.|.| .||++|+++|+.|||++.-+
T Consensus        76 ~~~~vn~~~l~~~~~~~~~v~~~~l~~~~~i~~~~~~vKvLg~G~l~~~~~~~v~a-~~S~~A~ekIe~aGG~v~~~  151 (152)
T COG0200          76 EYAVVNLGKLAELLPEGEEVTLASLKAAGVIRKLKDLVKVLGNGKLTKAVPVKVKA-KASKSAIEKIEAAGGKVELI  151 (152)
T ss_pred             ceeEEEHHHhhhhccccccccHHHHhhCCeEeccccccEEeccCeeccceeEEEEe-eeCHHHHHHHHHcCCEEEec
Confidence            568999999998884211       12334322   37999999999544688888 99999999999999998754

>PRK04005 50S ribosomal protein L18e; Provisional

Probab=96.23  E-value=0.00096  Score=54.53  Aligned_cols=38  Identities=13%  Similarity=0.079  Sum_probs=34.3

Q ss_pred             cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhc
Q psy2274         166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDV  203 (244)
Q Consensus       166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~  203 (244)
                      +++|++.+|+++++|++.|.+||+||+.+.    +++++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~v~~rl~~~r~~y~vVNL~~L~~~~   47 (111)
T PRK04005          6 IRDLKKASRENGAPIWKDVAERLEKPRRRRAEVNLSKINRYA   47 (111)
T ss_pred             HHHHHHHHhhhCCcHHHHHHHHHhCCCCccceEEHHHHHhhc
Confidence            468999999999999999999999999988    88888544

>KOG1742|consensus

Probab=89.34  E-value=0.68  Score=39.96  Aligned_cols=65  Identities=9%  Similarity=0.134  Sum_probs=46.3

Q ss_pred             CCCcccHHHHHHHhcC-------CCCCCCE--E----EEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEe
Q psy2274          91 NRPPMAISKIVRFMKK-------PTREGRV--A----VIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIV  155 (244)
Q Consensus        91 nR~pVnLSKI~R~~k~-------~~~egki--v----VVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~  155 (244)
                      -.|+|||.++-.+.-.       ..+.|..  |    .=.++|+|-|.|.+--.+-|.|=-||..|.++|.++||.+.
T Consensus        67 ~~P~vnldkLWtlv~~~~~~~~~~~k~g~aPvidv~~~Gy~kvlGkgklp~~~PvIVKak~~s~~AeekIk~~gg~~~  144 (147)
T KOG1742|consen   67 FCPTVNLDKLWTLVREQTRVKAAKNKTGAAPVIDVVQSGYYKVLGKGKLPEETPVIVKAKYFSRRAEEKIKKAGGAVV  144 (147)
T ss_pred             cCCcccHHHHHHhhhHHHHHHHhccCCCCCceeeeeecceeEeeccccCCCCCcEEEeccccCccchHHHHhcCceee
Confidence            4677777777554410       0122222  1    23578999999984457899999999999999999999885

>KOG0846|consensus

Probab=83.44  E-value=1  Score=42.18  Aligned_cols=67  Identities=9%  Similarity=0.140  Sum_probs=46.2

Q ss_pred             cccCCCcccHHHHHHHhcCCCC--CCCEE----------EEEee------eecCCcccccC-ceeEEEeeeccchhhhhh
Q psy2274          88 SKINRPPMAISKIVRFMKKPTR--EGRVA----------VIVGT------IVDDPRMWTIP-KLTIVRFMKKPTREGRVA  148 (244)
Q Consensus        88 srrnR~pVnLSKI~R~~k~~~~--egkiv----------VVvGK------VldDgrL~eVP-KltV~AL~fS~sAr~KI~  148 (244)
                      -++...|+||.+|.+.... ++  +.+.|          ++|+.      +++||- .+++ ++.+-+=++|+.|.+.|+
T Consensus        89 ~~r~~~pl~L~rlq~lID~-grid~~q~Idm~tL~~~g~i~p~~~eyGv~L~~~G~-d~~~~~i~iEvs~aS~~AiaaIE  166 (274)
T KOG0846|consen   89 GRRQYLPLSLGRLQKLIDT-GRIDPSQPIDMKTLKDSGLINPKGREYGVQLTADGA-DEFKAKINIEVSRASVQAIAAIE  166 (274)
T ss_pred             ccccCCcccHHHHHHHHHh-cCCCccCceeHHHHHhccCCCccccccCceeeccCC-ccccceEEEEehhhhHHHHHHHH
Confidence            4678889999999888763 11  11111          23332      334443 2344 899999999999999999


Q ss_pred             hcCcEEee
Q psy2274         149 VIVGTIVD  156 (244)
Q Consensus       149 kAGGki~T  156 (244)
                      ++||.|++
T Consensus       167 kaGG~vtt  174 (274)
T KOG0846|consen  167 KAGGSVTT  174 (274)
T ss_pred             hcCCeEEE
Confidence            99999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	244
2zkr_o	188	Structure Of A Mammalian Ribosomal 60s Subunit With		1e-26
2zkr_o	188	Structure Of A Mammalian Ribosomal 60s Subunit With		8e-06
3izr_R	188	Localization Of The Large Subunit Ribosomal Protein		5e-25
3izr_R	188	Localization Of The Large Subunit Ribosomal Protein		6e-06
3izs_R	186	Localization Of The Large Subunit Ribosomal Protein		2e-20
3izs_R	186	Localization Of The Large Subunit Ribosomal Protein		2e-04
4a17_N	181	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-17
3jyw_O	121	Structure Of The 60s Proteins For Eukaryotic Riboso		3e-17
3jyw_O	121	Structure Of The 60s Proteins For Eukaryotic Riboso		2e-04
1s1i_O	120	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		7e-17
1s1i_O	120	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-04
3zf7_I	193	High-resolution Cryo-electron Microscopy Structure		6e-16

>pdb|2ZKR|OO Chain o, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 188

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 81/99 (81%)
Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           GVDI H  DR+VRR +PKS+D+YL LLVKLYRFL RRTNS FN+++LKRLFMS+ NRPP+
Sbjct: 2   GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61
Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTI 134
           ++S+++R MK P RE + AV+VGT+ DD R+  +PKL +
Sbjct: 62  SLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKV 100

>pdb|2ZKR|OO Chain o, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 188

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/27 (74%), Positives = 24/27 (88%)
Query: 168 LYRFLTRRTNSKFNKIILKRLFMSKIN 194
           LYRFL RRTNS FN+++LKRLFMS+ N
Sbjct: 31  LYRFLARRTNSTFNQVVLKRLFMSRTN 57

>pdb|3IZR|R Chain R, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 188

Iteration: 1
 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 4/105 (3%)
Query: 36  GVD-ICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPP 94
           G+D +    ++R +R  PKS DVYL+LLVKLYRFL RRT SKFN +ILKRLFMSK NRPP
Sbjct: 2   GIDLVAGGRNKRTKRVAPKSDDVYLKLLVKLYRFLVRRTKSKFNAVILKRLFMSKTNRPP 61
Query: 95  MAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIP--KLTIVRF 137
           +++ ++  FMK    E  +AV+VGTI DD R+  +P  K+T +RF
Sbjct: 62  LSMRRLSNFMKG-KEEKNIAVVVGTITDDMRIQEVPAMKVTALRF 105

>pdb|3IZR|R Chain R, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 188

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/27 (81%), Positives = 23/27 (85%)
Query: 168 LYRFLTRRTNSKFNKIILKRLFMSKIN 194
           LYRFL RRT SKFN +ILKRLFMSK N
Sbjct: 32  LYRFLVRRTKSKFNAVILKRLFMSKTN 58

>pdb|3IZS|R Chain R, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 186

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
Query: 36  GVDICHK-YDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPP 94
           G+D   K + R   RT PKS +VYL+LLVKLY FL RRT++ FNK++LK LF+SKINRPP
Sbjct: 2   GIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPP 61
Query: 95  MAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIV 135
           +++S+I R +K+     +  V+VGT+ DD R++  PK T+ 
Sbjct: 62  VSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVA 102

>pdb|3IZS|R Chain R, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 186

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 168 LYRFLTRRTNSKFNKIILKRLFMSKIN 194
           LY FL RRT++ FNK++LK LF+SKIN
Sbjct: 32  LYTFLARRTDAPFNKVVLKALFLSKIN 58

>pdb|4A17|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 181

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 78/120 (65%), Gaps = 5/120 (4%)
Query: 36  GVDICHKYDRRVRRT---KPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINR 92
            +D+ HK  R V+R+   + KS +VY +LL+KLY+FL RRT+SKFN+ ILKRL  S++N+
Sbjct: 2   AIDL-HKQGRVVKRSVVRQTKSTNVYHKLLIKLYKFLVRRTDSKFNQNILKRLSSSRLNK 60
Query: 93  PPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVG 152
            P+++S+IV+ + +  +E +V V   T+ +D R+ T+PKLT+       T   R+    G
Sbjct: 61  FPLSLSRIVKNLNETNKE-QVIVSTSTVTNDERLLTVPKLTVCALKFTETARKRILAAGG 119

>pdb|3JYW|O Chain O, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 121

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 62/82 (75%)
Query: 54  SKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRV 113
           S +VYL+LLVKLY FL RRT++ FNK++LK LF+SKINRPP+++S+I R +K+     + 
Sbjct: 1   SDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKT 60
Query: 114 AVIVGTIVDDPRMWTIPKLTIV 135
            V+VGT+ DD R++  PK T+ 
Sbjct: 61  VVVVGTVTDDARIFEFPKTTVA 82

>pdb|3JYW|O Chain O, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 121

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 168 LYRFLTRRTNSKFNKIILKRLFMSKIN 194
           LY FL RRT++ FNK++LK LF+SKIN
Sbjct: 12  LYTFLARRTDAPFNKVVLKALFLSKIN 38

>pdb|1S1I|O Chain O, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 120

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 61/80 (76%)
Query: 56  DVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAV 115
           +VYL+LLVKLY FL RRT++ FNK++LK LF+SKINRPP+++S+I R +K+     +  V
Sbjct: 2   NVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVV 61
Query: 116 IVGTIVDDPRMWTIPKLTIV 135
           +VGT+ DD R++  PK T+ 
Sbjct: 62  VVGTVTDDARIFEFPKTTVA 81

>pdb|1S1I|O Chain O, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 120

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 168 LYRFLTRRTNSKFNKIILKRLFMSKIN 194
           LY FL RRT++ FNK++LK LF+SKIN
Sbjct: 11  LYTFLARRTDAPFNKVVLKALFLSKIN 37

>pdb|3ZF7|I Chain I, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 193

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 75/113 (66%), Gaps = 9/113 (7%)
Query: 36  GVDICH-KYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPP 94
           GVD+   +  +RV R    S + Y++LL+KLY+FL +RTNS FNK+I KRL  S+ NR P
Sbjct: 2   GVDLTGVQKKKRVVRHHTYSTNPYIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRAP 61
Query: 95  MAISKIVRFMKKPT---REGR---VAVIVGTIVDDPRMWTIPKLTI--VRFMK 139
           +++S+I   M++ T   ++G+   +AVIVG ++DD RM  IP L I  +RF K
Sbjct: 62  ISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSK 114

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	244
2zkr_o	188	60S ribosomal protein L18; protein-RNA complex, 60	6e-38
2zkr_o	188	60S ribosomal protein L18; protein-RNA complex, 60	3e-05
3izc_R	186	60S ribosomal protein RPL18 (L18E); eukaryotic rib	5e-34
3izc_R	186	60S ribosomal protein RPL18 (L18E); eukaryotic rib	9e-05
3iz5_R	188	60S ribosomal protein L18 (L18E); eukaryotic ribos	1e-33
3iz5_R	188	60S ribosomal protein L18 (L18E); eukaryotic ribos	8e-06
4a17_N	181	RPL18, 60S ribosomal protein L5; eukaryotic riboso	4e-30
4a17_N	181	RPL18, 60S ribosomal protein L5; eukaryotic riboso	8e-05
3jyw_O	121	60S ribosomal protein L18(A); eukaryotic ribosome,	2e-28
3jyw_O	121	60S ribosomal protein L18(A); eukaryotic ribosome,	5e-05
1vq8_O	116	50S ribosomal protein L18E; ribosome 50S, protein-	2e-21
1vq8_O	116	50S ribosomal protein L18E; ribosome 50S, protein-	4e-06

>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 188

 Score =  130 bits (327), Expect = 6e-38
 Identities = 61/102 (59%), Positives = 81/102 (79%)

Query: 36  GVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPM 95
           GVDI H  DR+VRR +PKS+D+YL LLVKLYRFL RRTNS FN+++LKRLFMS+ NRPP+
Sbjct: 2   GVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPL 61

Query: 96  AISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRF 137
           ++S+++R MK P RE + AV+VGT+ DD R+  +PKL +   
Sbjct: 62  SLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCAL 103

>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 188

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 20/27 (74%), Positives = 24/27 (88%)

Query: 168 LYRFLTRRTNSKFNKIILKRLFMSKIN 194
           LYRFL RRTNS FN+++LKRLFMS+ N
Sbjct: 31  LYRFLARRTNSTFNQVVLKRLFMSRTN 57

>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N Length = 181

 Score =  109 bits (274), Expect = 4e-30
 Identities = 41/104 (39%), Positives = 69/104 (66%), Gaps = 3/104 (2%)

Query: 36  GVDI--CHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRP 93
            +D+    +  +R    + KS +VY +LL+KLY+FL RRT+SKFN+ ILKRL  S++N+ 
Sbjct: 2   AIDLHKQGRVVKRSVVRQTKSTNVYHKLLIKLYKFLVRRTDSKFNQNILKRLSSSRLNKF 61

Query: 94  PMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLTIVRF 137
           P+++S+IV+ + +   + +V V   T+ +D R+ T+PKLT+   
Sbjct: 62  PLSLSRIVKNLNET-NKEQVIVSTSTVTNDERLLTVPKLTVCAL 104

>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N Length = 181

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 168 LYRFLTRRTNSKFNKIILKRLFMSKIN 194
           LY+FL RRT+SKFN+ ILKRL  S++N
Sbjct: 33  LYKFLVRRTDSKFNQNILKRLSSSRLN 59

>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O Length = 121

 Score =  103 bits (258), Expect = 2e-28
 Identities = 43/82 (52%), Positives = 62/82 (75%)

Query: 54  SKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRV 113
           S +VYL+LLVKLY FL RRT++ FNK++LK LF+SKINRPP+++S+I R +K+     + 
Sbjct: 1   SDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKT 60

Query: 114 AVIVGTIVDDPRMWTIPKLTIV 135
            V+VGT+ DD R++  PK T+ 
Sbjct: 61  VVVVGTVTDDARIFEFPKTTVA 82

>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O Length = 121

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 168 LYRFLTRRTNSKFNKIILKRLFMSKIN 194
           LY FL RRT++ FNK++LK LF+SKIN
Sbjct: 12  LYTFLARRTDAPFNKVVLKALFLSKIN 38

>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ... Length = 116

 Score = 85.1 bits (211), Expect = 2e-21
 Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 6/83 (7%)

Query: 53  KSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGR 112
              +  L  L+   +   R +       + +RL   +     + + +I R+ +    E  
Sbjct: 2   SKTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQ----EDE 57

Query: 113 VAVIVGTIVDDPRMWTIPKLTIV 135
             V+ G ++    +     +T+ 
Sbjct: 58  TVVVPGKVLGSGVLQK--DVTVA 78

>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ... Length = 116

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 3/27 (11%), Positives = 8/27 (29%)

Query: 168 LYRFLTRRTNSKFNKIILKRLFMSKIN 194
             +   R +       + +RL   +  
Sbjct: 14  DLKSAARSSGGAVWGDVAERLEKPRRT 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
3izc_R	186	60S ribosomal protein RPL18 (L18E); eukaryotic rib	100.0
3iz5_R	188	60S ribosomal protein L18 (L18E); eukaryotic ribos	100.0
4a17_N	181	RPL18, 60S ribosomal protein L5; eukaryotic riboso	100.0
2zkr_o	188	60S ribosomal protein L18; protein-RNA complex, 60	100.0
3jyw_O	121	60S ribosomal protein L18(A); eukaryotic ribosome,	100.0
3j21_P	120	50S ribosomal protein L18E; archaea, archaeal, KIN	100.0
1vq8_O	116	50S ribosomal protein L18E; ribosome 50S, protein-	99.95
3izc_R	186	60S ribosomal protein RPL18 (L18E); eukaryotic rib	98.85
3iz5_R	188	60S ribosomal protein L18 (L18E); eukaryotic ribos	98.82
4a17_N	181	RPL18, 60S ribosomal protein L5; eukaryotic riboso	98.77
3jyw_O	121	60S ribosomal protein L18(A); eukaryotic ribosome,	98.76
3j21_L	147	50S ribosomal protein L15P; archaea, archaeal, KIN	98.71
1vq8_L	165	50S ribosomal protein L15P; ribosome 50S, protein-	98.41
3r8s_L	143	50S ribosomal protein L15; protein biosynthesis, R	98.36
2zkr_o	188	60S ribosomal protein L18; protein-RNA complex, 60	98.3
4a17_K	149	L29, RPL27A, 60S ribosomal protein L27A; eukaryoti	98.12
3o58_Y	149	60S ribosomal protein L28; ribosomal RNA and prote	98.09
3v2d_P	150	50S ribosomal protein L15; ribosome associated inh	98.09
2zjr_I	156	50S ribosomal protein L15; ribosome, large ribosom	98.01
3iz5_O	144	60S ribosomal protein L27A (L15P); eukaryotic ribo	98.0
2zkr_l	148	60S ribosomal protein L27A; protein-RNA complex, 6	97.99
3bbo_N	257	Ribosomal protein L15; large ribosomal subunit, sp	97.74
3j21_P	120	50S ribosomal protein L18E; archaea, archaeal, KIN	97.72
1vq8_O	116	50S ribosomal protein L18E; ribosome 50S, protein-	96.41

>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N

Probab=100.00  E-value=5.8e-45  Score=313.02  Aligned_cols=129  Identities=35%  Similarity=0.546  Sum_probs=122.8

Q ss_pred             ceeecc--CcccccccccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCC-C
Q psy2274          35 NGVDIC--HKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTRE-G  111 (244)
Q Consensus        35 MGiD~~--~~~~kk~~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~e-g  111 (244)
                      |||||.  |+++++++|+.|+|+||||++||++|+|+||+|+||||++|++|||||+++|+|||||+|+++|+  ++| |
T Consensus         1 mgid~~~~~~~~~~~~r~~~kstN~yL~~Lvklyr~larrt~apf~r~V~KRLf~sr~nr~pVnLsrI~r~~~--~~e~g   78 (181)
T 4a17_N            1 MAIDLHKQGRVVKRSVVRQTKSTNVYHKLLIKLYKFLVRRTDSKFNQNILKRLSSSRLNKFPLSLSRIVKNLN--ETNKE   78 (181)
T ss_dssp             -CBCCGGGGCCCCCSSCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHSCCGGGSCCEEHHHHHHSCC--HHHHH
T ss_pred             CccccccccccccccccCCCCCCCHHHHHHHHHHHHHHhhcCChHHHHHHHHHcCCccccCcccHHHHHHHhc--cccCC
Confidence            999998  44589999999999999999999999999999999999999999999999999999999999998  334 8


Q ss_pred             CEEEEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274         112 RVAVIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK  165 (244)
Q Consensus       112 kivVVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK  165 (244)
                      +||||||||||||+|.++|+|+|||+.||++|++||++|||+|+++|||++ +|+
T Consensus        79 k~vVv~gKVLg~G~l~~v~kl~V~A~~fS~sA~ekIe~AGG~v~~~dqLa~~~P~  133 (181)
T 4a17_N           79 QVIVSTSTVTNDERLLTVPKLTVCALKFTETARKRILAAGGKCLTFDQLALKAPT  133 (181)
T ss_dssp             SEEEESSEEECCTTCCSCCCCEEECSEECHHHHHHHHTTTCEEECHHHHHHHCTT
T ss_pred             CEEEEEEEEcCCceEcccCCEEEEEeecCHHHHHHHHHcCCEEEEhHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999998 998

>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=5.7e-42  Score=295.77  Aligned_cols=131  Identities=50%  Similarity=0.841  Sum_probs=107.2

Q ss_pred             ceeeccCcccccccccCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEE
Q psy2274          35 NGVDICHKYDRRVRRTKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVA  114 (244)
Q Consensus        35 MGiD~~~~~~kk~~Rk~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkiv  114 (244)
                      |||||+|+++++++|+.|+|+||||++||++|+|+||+|+||||++|++|+|||++++++||||+|+++++..+++++++
T Consensus         1 mg~d~~~~~~~~~~r~~~~s~n~~l~~Lvk~yr~larrt~apl~rrlpKRgF~sr~~y~~VNLs~L~~~~~~~g~~~~ii   80 (188)
T 2zkr_o            1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTA   80 (188)
T ss_dssp             -------------------CCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHSCTTTSCEEEHHHHHSCSSSCCSTTSEE
T ss_pred             CceeeecCcccccccCCCCCCCHHHHHHHHHHHHHHhccCCCHHHHHHHhhCCCccceeeeeHHHHHHHhhhcCCCCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999874446789999


Q ss_pred             EEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274         115 VIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK  165 (244)
Q Consensus       115 VVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK  165 (244)
                      |++|||||||+|.+||+|+|||+.||++|+++|++|||+|++++||++ +|+
T Consensus        81 v~~~KVLg~GeL~kvpkLtV~A~~fSksArekIEaAGG~v~~idqla~~~P~  132 (188)
T 2zkr_o           81 VVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPK  132 (188)
T ss_dssp             EEEEEEECSSCCCCCSSCCEEEEEECHHHHHHHHHHSSCEEEHHHHHHHCTT
T ss_pred             EeecEEECCceecccCCeEEEEeecCHHHHHHHHHcCCEEEEhHHHHHHCCC
Confidence            999999999999999999999999999999999999999999999998 998

>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O

Probab=100.00  E-value=8.5e-40  Score=265.27  Aligned_cols=112  Identities=41%  Similarity=0.721  Sum_probs=109.6

Q ss_pred             CcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEEEEEeeeecCCcccccCcee
Q psy2274          54 SKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLT  133 (244)
Q Consensus        54 StN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkivVVvGKVldDgrL~eVPKlt  133 (244)
                      |+||||++||++|+|+||+|+||||++|+||+|||+++++|||||+|+++++.+|.+|+++|+||||||||+|.++|+++
T Consensus         1 s~n~~l~~lvkl~~~lar~t~apl~rrvpKRgF~sr~~~~~VnLs~L~~~~~~~g~~g~~vvv~~KVlg~G~l~~~~kl~   80 (121)
T 3jyw_O            1 SDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTT   80 (121)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSCCHHHHHHHHTTTSCSTTSCCBCHHHHHHHTTTTSCSSSEEEESSCBCCCSCCCSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHHhhcCChHHHHHHHHHCCCCCccceEEHHHHHHHhhccCCCCCEEEEEEEEcCCceEcccCCEE
Confidence            79999999999999999999999999999999999999999999999999998888999999999999999999889999


Q ss_pred             EEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274         134 IVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK  165 (244)
Q Consensus       134 V~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK  165 (244)
                      |||+.||++|++||++|||+|+++|||++ +|+
T Consensus        81 V~a~~fS~~A~~kIe~AGG~~~~~dql~~~~P~  113 (121)
T 3jyw_O           81 VAALRFTAGARAKIVKAGGECITLDQLAVRAPK  113 (121)
T ss_dssp             EECSSBCTTTTTHHHHHTCCBCCSTTHHHHCTT
T ss_pred             EEEEecCHHHHHHHHHcCCEEEEHHHHHHHCCC
Confidence            99999999999999999999999999998 998

>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=3.7e-33  Score=225.28  Aligned_cols=110  Identities=18%  Similarity=0.266  Sum_probs=105.8

Q ss_pred             cCCCCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEEEEEeeeecCCccccc
Q psy2274          50 TKPKSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTI  129 (244)
Q Consensus        50 k~~kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkivVVvGKVldDgrL~eV  129 (244)
                      +.++|+||||++||++|+|+||+|++|||+++.||+|+|+++++||||++|+++++    +|++++++|||||+|+|.  
T Consensus         2 ~~~~~~n~~l~~li~~~~~~~r~~~~Pl~rrlpKrgF~~r~~~~~VnL~~L~~~~~----~g~~i~~~vKVLg~G~l~--   75 (120)
T 3j21_P            2 KRTGPTDPNLRRLIRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRYAN----DGEMIVVPGSVLGAGKLE--   75 (120)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHSCTTSSEEEEHHHHTTSSC----TTCEEEEEEEEECSSCCC--
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhccCCcHHHHHHhhcCCCCCcceeEEHHHHHHHHh----cCCEEEEEEEEcCCCeec--
Confidence            35779999999999999999999999999999999999999999999999999997    789999999999999998  


Q ss_pred             CceeEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274         130 PKLTIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK  165 (244)
Q Consensus       130 PKltV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK  165 (244)
                      ++++|+|+.||++|+++|++|||+|.+++||.. +|+
T Consensus        76 ~kl~V~a~~fS~~A~ekIe~AGG~v~~~~qL~~~~p~  112 (120)
T 3j21_P           76 KKVIVAAWKFSETARRKIIEAGGEAITIEELIERNPT  112 (120)
T ss_dssp             SCCEEEEEEECHHHHHHHTTTSSCEEESTTHHHHCSS
T ss_pred             CCEEEEEeccCHHHHHHHHHcCCEEEEeHHHHHHCCC
Confidence            599999999999999999999999999999997 998

>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...

Probab=99.95  E-value=1.5e-28  Score=197.26  Aligned_cols=106  Identities=15%  Similarity=0.213  Sum_probs=101.8

Q ss_pred             CCcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEEEEEeeeecCCcccccCce
Q psy2274          53 KSKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKL  132 (244)
Q Consensus        53 kStN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkivVVvGKVldDgrL~eVPKl  132 (244)
                      .|+||||++||++|+|+||+|+.|||+++.||..+++.++++|||++|+++++    +|++++|++||||+|++.  .++
T Consensus         2 ~~~n~~l~~li~~~~~~~r~~~~Pl~rRlPKrG~~~~~~~~~VnL~~L~~~~~----~g~~ilv~vKVLg~G~l~--k~l   75 (116)
T 1vq8_O            2 SKTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQ----EDETVVVPGKVLGSGVLQ--KDV   75 (116)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHSSCHHHHHHHHHHTSCTTTSEEEEHHHHHHHCC----TTSEEEEEEEEECCSCCC--SCC
T ss_pred             CCCCHHHHHHHHHHHHHHhccCCCHhhhcccCCCCCCceeeeEeHHHHHHHcc----CCCEEEEEEEEeeCCeec--CCE
Confidence            48999999999999999999999999999999999999999999999999987    788888999999999998  499


Q ss_pred             eEEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274         133 TIVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK  165 (244)
Q Consensus       133 tV~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK  165 (244)
                      +|+|.+||++|+++|++| |+|.+++||++ +|+
T Consensus        76 ~V~a~~fSk~A~ekIeaA-G~v~~~~~l~~~~p~  108 (116)
T 1vq8_O           76 TVAAVDFSGTAETKIDQV-GEAVSLEQAIENNPE  108 (116)
T ss_dssp             EEEEEEECHHHHHHHHHH-SEEEEHHHHHHHCTT
T ss_pred             EEEEEecCHHHHHHHHHc-CeEEEhHHHHHHCCC
Confidence            999999999999999999 99999999998 998

>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N

Probab=98.77  E-value=3.9e-10  Score=97.14  Aligned_cols=56  Identities=39%  Similarity=0.570  Sum_probs=49.3

Q ss_pred             cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcCC-C-Ccccccccccccccchh
Q psy2274         166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVKP-T-NTLALLPVFPTVTRKLT  223 (244)
Q Consensus       166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~~-~-~~~~~~~v~~tvt~~~~  223 (244)
                      +++|+||+|||+++||+.|++|||||++|+    +|+++..++. + +++  .||+++|+.|-.
T Consensus        31 vklyr~larrt~apf~r~V~KRLf~sr~nr~pVnLsrI~r~~~~~e~gk~--vVv~gKVLg~G~   92 (181)
T 4a17_N           31 IKLYKFLVRRTDSKFNQNILKRLSSSRLNKFPLSLSRIVKNLNETNKEQV--IVSTSTVTNDER   92 (181)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHSCCGGGSCCEEHHHHHHSCCHHHHHSE--EEESSEEECCTT
T ss_pred             HHHHHHHHhhcCChHHHHHHHHHcCCccccCcccHHHHHHHhccccCCCE--EEEEEEEcCCce
Confidence            799999999999999999999999999999    9999999982 3 454  578899998753

>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O

Probab=98.76  E-value=8.6e-10  Score=89.39  Aligned_cols=56  Identities=45%  Similarity=0.660  Sum_probs=48.6

Q ss_pred             cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcC-C--CCcccccccccccccchh
Q psy2274         166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVK-P--TNTLALLPVFPTVTRKLT  223 (244)
Q Consensus       166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~-~--~~~~~~~~v~~tvt~~~~  223 (244)
                      +++|+||+|||+++||+.|+||+|||++|+    +|+++..++ +  +++  +.+++++|++|-.
T Consensus        10 vkl~~~lar~t~apl~rrvpKRgF~sr~~~~~VnLs~L~~~~~~~g~~g~--~vvv~~KVlg~G~   72 (121)
T 3jyw_O           10 VKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANK--TVVVVGTVTDDAR   72 (121)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHHTTTSCSTTSCCBCHHHHHHHTTTTSCSSS--EEEESSCBCCCSC
T ss_pred             HHHHHHHHhhcCChHHHHHHHHHCCCCCccceEEHHHHHHHhhccCCCCC--EEEEEEEEcCCce
Confidence            689999999999999999999999999999    999999887 2  455  3477899998753

>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=98.71  E-value=1.3e-08  Score=84.54  Aligned_cols=65  Identities=14%  Similarity=0.152  Sum_probs=54.2

Q ss_pred             cCCCcccHHHHHHHhcC------CCCCCCEEEEE-----eeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEee
Q psy2274          90 INRPPMAISKIVRFMKK------PTREGRVAVIV-----GTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVD  156 (244)
Q Consensus        90 rnR~pVnLSKI~R~~k~------~~~egkivVVv-----GKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~T  156 (244)
                      ...++|||++|..+...      -.++++.+||.     .|||++|.|..  +|+|.|..||++|+++|+.|||+|..
T Consensus        71 ~~~~~VNL~~L~~l~~~L~~~gli~~~~~~~vid~~~~GvKVLG~G~l~~--~v~Vka~~fS~~A~ekIeaaGG~v~~  146 (147)
T 3j21_L           71 REVRVVNLKFIDEHLDELMQMGIAYEEGGKIIVDVTQFADKVLGTGKLTR--PLVIKARAFSPKAEEKIKAAGGEAVL  146 (147)
T ss_dssp             CCCCEEEHHHHHHTTTTTTTSCCCSSSSBSEEEEGGGGCCEEECCSCCSS--CEEEEESEECHHHHHHHHHTTCEEEE
T ss_pred             ceeEEEEHHHHHHHHHHHHHcCcccccCCcceecccccCcEEecCCccCc--CEEEEEEecCHHHHHHHHHcCCEEEe
Confidence            46899999999987631      11346677787     89999999873  89999999999999999999999963

>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...

Probab=98.41  E-value=1.6e-07  Score=79.01  Aligned_cols=71  Identities=8%  Similarity=-0.033  Sum_probs=52.8

Q ss_pred             cCCCcccHHHHHHHhcC---CC---CCCCEEEEE-----------e--eeecCCcccccCceeEEEeeeccchhhhhhhc
Q psy2274          90 INRPPMAISKIVRFMKK---PT---REGRVAVIV-----------G--TIVDDPRMWTIPKLTIVRFMKKPTREGRVAVI  150 (244)
Q Consensus        90 rnR~pVnLSKI~R~~k~---~~---~egkivVVv-----------G--KVldDgrL~eVPKltV~AL~fS~sAr~KI~kA  150 (244)
                      ...++|||++|.++...   .+   .++...||-           |  |||++|.|..  +|+|-|..||++|+++|+.+
T Consensus        60 ~~~~~VNL~~L~~l~~~~~~~g~~~~~~~~~vId~~~L~~~gli~~~vKVLG~G~l~k--~l~Vka~~fSk~A~ekIeaA  137 (165)
T 1vq8_L           60 EEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRH--ELTLIADDFSEGAREKVEGA  137 (165)
T ss_dssp             CCEEEEEHHHHHHTTGGGTTSCCCC-----CEEEGGGTCTTCTTSSEEEEECCSCCCS--CCEEEESEECHHHHHHHHHT
T ss_pred             ceeeeEEHHHHHHHHHHhhhccccccCCCCeEECHHHHHHCCccCCceEEecCCccCC--CEEEEEEecCHHHHHHHHHc
Confidence            56889999999988510   01   122322343           4  9999999884  89999999999999999999


Q ss_pred             CcEEeehhhhhc
Q psy2274         151 VGTIVDDPRMWT  162 (244)
Q Consensus       151 GGki~TidrL~e  162 (244)
                      ||+|..+..-.|
T Consensus       138 GG~v~~i~~~~~  149 (165)
T 1vq8_L          138 GGSVELTDLGEE  149 (165)
T ss_dssp             TCEEEECTTTCC
T ss_pred             CCEEEEeechhh
Confidence            999998765333

>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ...

Probab=98.36  E-value=9e-09  Score=85.35  Aligned_cols=72  Identities=14%  Similarity=0.168  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHhcc--ccCCCcccHHHHHHHhcCCCCCCCEE---------EE-----EeeeecCCcccccCceeEEEeee
Q psy2274          76 KFNKIILKRLFMS--KINRPPMAISKIVRFMKKPTREGRVA---------VI-----VGTIVDDPRMWTIPKLTIVRFMK  139 (244)
Q Consensus        76 ~fwk~VakRL~ms--rrnR~pVnLSKI~R~~k~~~~egkiv---------VV-----vGKVldDgrL~eVPKltV~AL~f  139 (244)
                      |||+.+-+|=|.+  ++.+++|||++|+++.      +++|         +|     +-|||++|.|.  .+|+|.|..|
T Consensus        55 Pl~rRlPK~GF~~~~~~~y~~VNL~~L~~~~------~~~I~~~~L~~~glv~~~~~~VKVLg~Gel~--~~l~V~a~~~  126 (143)
T 3r8s_L           55 PLYRRLPKFGFTSRKAAITAEIRLSDLAKVE------GGVVDLNTLKAANIIGIQIEFAKVILAGEVT--TPVTVRGLRV  126 (143)
T ss_dssp             CHHHHSCCCCCCCSTGGGEEECCSSSSSCSS------SSEEEHHHHGGGTSSCTTCCEEECCCCSCCC--SCCEEESSCC
T ss_pred             ccEEEccccccCCcccceeEEEEHHHhhhcc------CCeecHHHHHHcCccccCCCceEEeeCCccc--ccEEEEEEec
Confidence            5555555555543  5678999999998652      2444         33     78999999987  4899999999


Q ss_pred             ccchhhhhhhcCcEEe
Q psy2274         140 KPTREGRVAVIVGTIV  155 (244)
Q Consensus       140 S~sAr~KI~kAGGki~  155 (244)
                      |++|+++|++|||+|.
T Consensus       127 SksA~ekIEaAGG~v~  142 (143)
T 3r8s_L          127 TKGARAAIEAAGGKIE  142 (143)
T ss_dssp             CHHHHHHHHTTTCEEE
T ss_pred             CHHHHHHHHHcCCEEe
Confidence            9999999999999985

>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=98.30  E-value=8.8e-08  Score=82.86  Aligned_cols=56  Identities=48%  Similarity=0.686  Sum_probs=44.1

Q ss_pred             cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcC-CCCcccccccccccccc
Q psy2274         166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVK-PTNTLALLPVFPTVTRK  221 (244)
Q Consensus       166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~-~~~~~~~~~v~~tvt~~  221 (244)
                      +++|+||+|||+++||+.|.||+|||+.|+    +|+|+..+. +.+...++++.++|+.|
T Consensus        29 vk~yr~larrt~apl~rrlpKRgF~sr~~y~~VNLs~L~~~~~~~g~~~~iiv~~~KVLg~   89 (188)
T 2zkr_o           29 VKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDD   89 (188)
T ss_dssp             HHHHHHHHHC-CCHHHHHHHHHHHSCTTTSCEEEHHHHHSCSSSCCSTTSEEEEEEEEECS
T ss_pred             HHHHHHHHhccCCCHHHHHHHhhCCCccceeeeeHHHHHHHhhhcCCCCcEEEeecEEECC
Confidence            799999999999999999999999999998    899987652 22222345666788775

>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K

Probab=98.12  E-value=2.1e-06  Score=71.47  Aligned_cols=66  Identities=18%  Similarity=0.248  Sum_probs=50.6

Q ss_pred             cCCCcccHHHHHHHhcCC------CCCCCEEEE------EeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEee
Q psy2274          90 INRPPMAISKIVRFMKKP------TREGRVAVI------VGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVD  156 (244)
Q Consensus        90 rnR~pVnLSKI~R~~k~~------~~egkivVV------vGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~T  156 (244)
                      ...++|||++|.......      ..+++..||      ..|||++|.|.+ .+|+|.|..||++|+++|+.|||+|..
T Consensus        70 ~~~~~VNLdkL~~l~~~~~~~~~~~~~~~~~vId~~~~g~~KvLG~G~l~~-~~v~v~a~~fS~~A~~kIe~aGG~~~~  147 (149)
T 4a17_K           70 LHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLPN-QPVVVKAKYFSKTAERRIVAVGGACVL  147 (149)
T ss_dssp             GCCCEEEGGGHHHHSCHHHHHHHHHCCSSCCEEEHHHHTCCEEECCSCCCS-SCCEEEESEECHHHHHHHHHTTCEEEE
T ss_pred             ceeeEEEHHHHHHHhhhhcchhhhhhcCCceEEEeccCCeEEEecCCccCC-CCEEEEEeecCHHHHHHHHHcCCEEEE
Confidence            346899999997764310      023444455      489999999833 479999999999999999999999974

>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V

Probab=98.09  E-value=5.8e-07  Score=75.15  Aligned_cols=64  Identities=14%  Similarity=0.237  Sum_probs=50.3

Q ss_pred             CCcccHHHHHHHhcCC--------CCCCCEEEE------EeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEee
Q psy2274          92 RPPMAISKIVRFMKKP--------TREGRVAVI------VGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVD  156 (244)
Q Consensus        92 R~pVnLSKI~R~~k~~--------~~egkivVV------vGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~T  156 (244)
                      .|+|||.+|.......        +++++..||      +.|||++|.|.+ .+|+|.|..||++|+++|+.|||+|..
T Consensus        70 ~~~INldkL~~lv~~~~~~~~a~~~~~~~~~vID~~~~g~vKVLG~G~l~~-~~v~Vka~~fS~~A~ekIe~aGG~~~~  147 (149)
T 3o58_Y           70 KPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIPN-VPVIVKARFVSKLAEEKIRAAGGVVEL  147 (149)
T ss_dssp             CCSTTTTHHHHCSSCCSCSSCTTSSTTSSCCBCCCSSSCSCCCCCCCCCCS-CCEEECSSCCTTTTHHHHGGGSCEEEC
T ss_pred             cceEEHHHHHHHhHHHHhhhhhhhccCCCCcEEEEecccceEEEcCCccCC-CCEEEEEeecCHHHHHHHHHcCCEEEE
Confidence            5799999998876421        113444444      599999999832 479999999999999999999999974

>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...

Probab=98.09  E-value=1.3e-07  Score=79.16  Aligned_cols=73  Identities=14%  Similarity=0.064  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHhcc-------ccCCCcccHHHHHHHhcCCCCCCCEE------------EEEeeeecCCcccccCceeEEE
Q psy2274          76 KFNKIILKRLFMS-------KINRPPMAISKIVRFMKKPTREGRVA------------VIVGTIVDDPRMWTIPKLTIVR  136 (244)
Q Consensus        76 ~fwk~VakRL~ms-------rrnR~pVnLSKI~R~~k~~~~egkiv------------VVvGKVldDgrL~eVPKltV~A  136 (244)
                      ||++.+=||=|.+       +..+++|||++|++ ..     |.|-            ..+.|||++|.|.   +|+|.|
T Consensus        57 Pl~rRlPK~GF~~~~~~~~~~~~y~~VNL~~L~~-~~-----G~I~~~~L~~~glv~~~~~VKvLg~G~l~---~v~V~a  127 (150)
T 3v2d_P           57 TTLMRLPKRGMQGQVPGEIKRPRYQGVNLKDLAR-FE-----GEVTPELLVRAGLLKKGYRLKILGEGEAK---PLKVVA  127 (150)
T ss_dssp             CTTTTSCCCSCCCCTTCCCCCCCEEEEEHHHHTT-CC-----SEECHHHHHTTTSSCTTCEEEEECSSCCC---SCEECB
T ss_pred             ccEEEcCccCccCccccccccceEEEEEHHHHhh-cC-----CcccHHHHHHCCCcccccceEEEecCCcc---cEEEEE
Confidence            4445454544444       56788999999987 32     2111            1378999999976   899999


Q ss_pred             eeeccchhhhhhhcCcEEeeh
Q psy2274         137 FMKKPTREGRVAVIVGTIVDD  157 (244)
Q Consensus       137 L~fS~sAr~KI~kAGGki~Ti  157 (244)
                      ..||++|+++|+.+||+|..+
T Consensus       128 ~~~S~~A~~kIe~aGG~v~~~  148 (150)
T 3v2d_P          128 HAFSKSALEKLKAAGGEPVLL  148 (150)
T ss_dssp             SCBCHHHHHHHHHTTCBCCBC
T ss_pred             EEcCHHHHHHHHHcCCEEEEe
Confidence            999999999999999999765

>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M

Probab=98.01  E-value=4e-07  Score=76.16  Aligned_cols=65  Identities=9%  Similarity=-0.027  Sum_probs=50.4

Q ss_pred             ccCCCcccHHHHHHHhcCCCCCC-CEE---------EEEeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeeh
Q psy2274          89 KINRPPMAISKIVRFMKKPTREG-RVA---------VIVGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDD  157 (244)
Q Consensus        89 rrnR~pVnLSKI~R~~k~~~~eg-kiv---------VVvGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~Ti  157 (244)
                      +..+++|||++|.++..  +.-+ +..         ..+.|||++|.|.  .+|+|-|..||++|+++|+.|||+|..+
T Consensus        69 ~~~~~~VNL~~L~~l~~--~~i~~~~L~~~gli~~~~~~vKVLG~G~l~--~~l~Vka~~fSk~A~ekIEaAGG~v~~i  143 (156)
T 2zjr_I           69 GTTYEVVKLSQLQDLED--TTFDRDTLEAYRLVRRKNRPVKLLASGEIS--RAVTVHVDAASAAAIKAVEAAGGRVVLP  143 (156)
T ss_dssp             CCCCCEECHHHHTTSCC--CCCCTTTTHHHHHCCCCSSCCEECCCCCCC--CCCCCCCSEECHHHHHHHGGGSCCCCCC
T ss_pred             ceEEEeechhHHHhhhc--CCcCHHHHHhCCcEeccccceEEeeCCccC--cCeEEEEEecCHHHHHHHHHcCCEEEEe
Confidence            56789999999998643  1000 000         1357999999987  4899999999999999999999999654

>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=97.99  E-value=2e-06  Score=70.77  Aligned_cols=64  Identities=13%  Similarity=0.157  Sum_probs=48.2

Q ss_pred             CcccHHHHHHHhcCCCCCC-------CEEEE------EeeeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeeh
Q psy2274          93 PPMAISKIVRFMKKPTREG-------RVAVI------VGTIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDD  157 (244)
Q Consensus        93 ~pVnLSKI~R~~k~~~~eg-------kivVV------vGKVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~Ti  157 (244)
                      ++|||++|+.+.......+       +.-||      .-|||++|.|.. .+|+|-|..||++|+++|+.|||+|..+
T Consensus        71 ~~VNl~~L~~l~~~~~~~~~~~~l~~~~~vI~~~~~~~vKVLG~Gel~k-~~l~Vka~~fSk~A~ekIeaAGG~v~~~  147 (148)
T 2zkr_l           71 PTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLV  147 (148)
T ss_dssp             CEEETHHHHHHTTTTTSSCTTTTEEEHHHHSTTCSSSCCEEECCSCCCS-SCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred             ceEEHHHHHhhhhcCcEEehhhhccccCCeEeccccCceEEecCCcccc-CCEEEEEEecCHHHHHHHHHcCCEEEec
Confidence            8999999998854211111       11122      149999999873 4899999999999999999999999753

>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=97.74  E-value=7.9e-07  Score=80.03  Aligned_cols=78  Identities=14%  Similarity=0.103  Sum_probs=57.3

Q ss_pred             chHHHHHHH-H----Hhc-cccCCCcccHHHHHHH-hcCCCCCCCE------------------EEEEeeeecCCccccc
Q psy2274          75 SKFNKIILK-R----LFM-SKINRPPMAISKIVRF-MKKPTREGRV------------------AVIVGTIVDDPRMWTI  129 (244)
Q Consensus        75 a~fwk~Vak-R----L~m-srrnR~pVnLSKI~R~-~k~~~~egki------------------vVVvGKVldDgrL~eV  129 (244)
                      -|+|+.+-+ |    .+. .+..+++|||++|+++ ..    ++++                  ..-..|||++|.|.  
T Consensus       119 mPl~rRlPK~rGF~n~~~~~r~~y~~VNL~kL~~lr~~----eg~~Idle~L~~aGlI~~~gr~~~~~VKVLG~GeLt--  192 (257)
T 3bbo_N          119 MPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQ----DGEEVSLETLKAKRVINPSGRERKLPLKILADGELS--  192 (257)
T ss_dssp             SSTTSCCCCCSSCCCCCSSCCSSSSCSCSSCCSCSSTT----TTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSSCCC--
T ss_pred             CcchhhcccccccCCccccCcceeeeEeHHHHhhcccC----CCCEeCHHHHHhCCcccccccccCccEEEEeCCccC--
Confidence            355555555 2    222 3567899999999864 32    1111                  11256999999987  


Q ss_pred             CceeEEEeeeccchhhhhhhcCcEEeehh
Q psy2274         130 PKLTIVRFMKKPTREGRVAVIVGTIVDDP  158 (244)
Q Consensus       130 PKltV~AL~fS~sAr~KI~kAGGki~Tid  158 (244)
                      .+|+|-|..||++|+++|+.+||+|..+.
T Consensus       193 kkLtVkA~~fSksA~eKIEaAGG~v~~i~  221 (257)
T 3bbo_N          193 KKLTIKAGAFSTSAKEKLEYAGCSLIVLP  221 (257)
T ss_dssp             SSCCCCSSCCTGGGTTSSTTTTCCEECCC
T ss_pred             CCeEEEEEecCHHHHHHHHHcCCEEEEee
Confidence            48999999999999999999999998774

>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=97.72  E-value=4e-06  Score=67.45  Aligned_cols=53  Identities=15%  Similarity=0.055  Sum_probs=41.9

Q ss_pred             cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcCCCCcccccccccccccc
Q psy2274         166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVKPTNTLALLPVFPTVTRK  221 (244)
Q Consensus       166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~~~~~~~~~~v~~tvt~~  221 (244)
                      +++|+|++|||+++|++.+.||+|+|+.+.    +|+|+..+...+ +  .++.+.|..|
T Consensus        15 i~~~~~~~r~~~~Pl~rrlpKrgF~~r~~~~~VnL~~L~~~~~~g~-~--i~~~vKVLg~   71 (120)
T 3j21_P           15 IRYLRKKSNEYGVKIWKDVAWRLERPRRQRAEVNVSKINRYANDGE-M--IVVPGSVLGA   71 (120)
T ss_dssp             HHHHHHHHHHSCCSHHHHHHHHHHSCTTSSEEEEHHHHTTSSCTTC-E--EEEEEEEECS
T ss_pred             HHHHHHHHhccCCcHHHHHHhhcCCCCCcceeEEHHHHHHHHhcCC-E--EEEEEEEcCC
Confidence            789999999999999999999999998888    899988775333 2  3334455544

>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ...

Probab=96.41  E-value=0.00052  Score=54.76  Aligned_cols=42  Identities=10%  Similarity=0.050  Sum_probs=35.9

Q ss_pred             cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcCCCC
Q psy2274         166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVKPTN  207 (244)
Q Consensus       166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~~~~  207 (244)
                      +++|+|++|||+.+|++.+.||..+++.+.    +++++..+...+
T Consensus        12 i~~~~~~~r~~~~Pl~rRlPKrG~~~~~~~~~VnL~~L~~~~~~g~   57 (116)
T 1vq8_O           12 IADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDE   57 (116)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHTSCTTTSEEEEHHHHHHHCCTTS
T ss_pred             HHHHHHHHhccCCCHhhhcccCCCCCCceeeeEeHHHHHHHccCCC
Confidence            689999999999999999999997777776    899987665433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	244
d1vqoo1	115	c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeo	3e-16
d1vqoo1	115	c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeo	7e-05

>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 70.1 bits (172), Expect = 3e-16
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 4/85 (4%)

Query: 56  DVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAV 115
           +  L  L+   +   R +       + +RL   +     + + +I R+ +    E    V
Sbjct: 4   NPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQ----EDETVV 59

Query: 116 IVGTIVDDPRMWTIPKLTIVRFMKK 140
           + G ++    +     +  V F   
Sbjct: 60  VPGKVLGSGVLQKDVTVAAVDFSGT 84

>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 168 LYRFLTRRTNSKFNKIILKRLFMSKINSIS---ERELDVKPTNTLALLPVFPTVTRKLTS 224
             +   R +       + +RL   +         R       +   ++P     +  L  
Sbjct: 13  DLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDETVVVPGKVLGSGVLQK 72

Query: 225 DLKAASL 231
           D+  A++
Sbjct: 73  DVTVAAV 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1vqoo1	115	Ribosomal protein L18e {Archaeon Haloarcula marism	100.0
d1vqoo1	115	Ribosomal protein L18e {Archaeon Haloarcula marism	98.41
d1vqol1	150	Ribosomal protein L15 (L15p) {Archaeon Haloarcula	97.84
d2j01p1	146	Ribosomal protein L15 (L15p) {Thermus thermophilus	96.61
d2zjri1	141	Ribosomal protein L15 (L15p) {Deinococcus radiodur	96.52
d2gycj1	140	Ribosomal protein L15 (L15p) {Escherichia coli [Ta	96.43

>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=8.6e-39  Score=256.00  Aligned_cols=105  Identities=14%  Similarity=0.181  Sum_probs=101.4

Q ss_pred             CcCHHHHHHHHHHHHHhhhcCchHHHHHHHHHhccccCCCcccHHHHHHHhcCCCCCCCEEEEEeeeecCCcccccCcee
Q psy2274          54 SKDVYLELLVKLYRFLTRRTNSKFNKIILKRLFMSKINRPPMAISKIVRFMKKPTREGRVAVIVGTIVDDPRMWTIPKLT  133 (244)
Q Consensus        54 StN~yL~lLIklyr~laRrt~a~fwk~VakRL~msrrnR~pVnLSKI~R~~k~~~~egkivVVvGKVldDgrL~eVPKlt  133 (244)
                      +|||||++||++|+++||+++|+||++||+||+|||++|+|||||||+++++    +|+++||||||||||+|.  ++++
T Consensus         2 kTNp~l~~lI~~lk~~sr~~~a~iwk~va~rL~~~rr~r~~VnLski~~~~k----~~~~vvvpgKVLg~G~l~--~k~~   75 (115)
T d1vqoo1           2 KTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQ----EDETVVVPGKVLGSGVLQ--KDVT   75 (115)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHSCGGGSEEEEHHHHHHHCC----TTSEEEEEEEEECCSCCC--SCCE
T ss_pred             CCCHHHHHHHHHHHHHHhhhcCHHHHHHHHHHhcccccCCCccHHHHHHhcc----CCCEEEEeeEEecccEEc--CCEE
Confidence            6899999999999999999999999999999999999999999999999998    899999999999999998  5999


Q ss_pred             EEEeeeccchhhhhhhcCcEEeehhhhhc-CCC
Q psy2274         134 IVRFMKKPTREGRVAVIVGTIVDDPRMWT-IPK  165 (244)
Q Consensus       134 V~AL~fS~sAr~KI~kAGGki~TidrL~e-NPK  165 (244)
                      |||++||++|++||+.+|| +++++||++ ||+
T Consensus        76 V~A~~fS~sA~~kI~~aGg-~iti~el~~~nP~  107 (115)
T d1vqoo1          76 VAAVDFSGTAETKIDQVGE-AVSLEQAIENNPE  107 (115)
T ss_dssp             EEEEEECHHHHHHHHHHSE-EEEHHHHHHHCTT
T ss_pred             EEEeecCHHHHHHHHHcCC-EEEHHHHHHHCCC
Confidence            9999999999999998865 899999998 998

>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.41  E-value=1.6e-08  Score=79.60  Aligned_cols=53  Identities=13%  Similarity=0.051  Sum_probs=46.9

Q ss_pred             cceEEeeecccCchhHHHHHHHHhhhhhhh----hhhhhhhcCCCCcccccccccccccc
Q psy2274         166 LTLYRFLTRRTNSKFNKIILKRLFMSKINS----ISERELDVKPTNTLALLPVFPTVTRK  221 (244)
Q Consensus       166 ~~ly~fl~rrt~s~fnk~i~~rl~~sk~nr----~s~~~~~~~~~~~~~~~~v~~tvt~~  221 (244)
                      +++|+|++|+|+++||+.|++||++|+.||    +|+++..++..|+   .||.|.|+.|
T Consensus        11 I~~lk~~sr~~~a~iwk~va~rL~~~rr~r~~VnLski~~~~k~~~~---vvvpgKVLg~   67 (115)
T d1vqoo1          11 IADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDET---VVVPGKVLGS   67 (115)
T ss_dssp             HHHHHHHHHHSSCSHHHHHHHHHHSCGGGSEEEEHHHHHHHCCTTSE---EEEEEEEECC
T ss_pred             HHHHHHHHhhhcCHHHHHHHHHHhcccccCCCccHHHHHHhccCCCE---EEEeeEEecc
Confidence            689999999999999999999999999999    9999999886664   5677788654

>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.84  E-value=5.3e-06  Score=65.03  Aligned_cols=72  Identities=8%  Similarity=-0.022  Sum_probs=53.4

Q ss_pred             hccccCCCcccHHHHHHHhcCCCC------CCCEEEE-------------EeeeecCCcccccCceeEEEeeeccchhhh
Q psy2274          86 FMSKINRPPMAISKIVRFMKKPTR------EGRVAVI-------------VGTIVDDPRMWTIPKLTIVRFMKKPTREGR  146 (244)
Q Consensus        86 ~msrrnR~pVnLSKI~R~~k~~~~------egkivVV-------------vGKVldDgrL~eVPKltV~AL~fS~sAr~K  146 (244)
                      +..+.+..++||+.|+.....-..      ++.+.++             +-|||++|.+.  .+++|-|-.||++|.++
T Consensus        55 ~~~~~~~~~inl~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vKlLG~G~l~--~~l~Ika~~~S~sA~ek  132 (150)
T d1vqol1          55 QKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVR--HELTLIADDFSEGAREK  132 (150)
T ss_dssp             GGGCCCEEEEEHHHHHHTTTTCTTSCCCC-----CEEEGGGTCTTCSSSSEEEEECCSCCC--SCCEEEESEECHHHHHH
T ss_pred             ccccceeeeccHHHHHHHHhhhccccccccccchhhHHHHhhccccccccceEEecCCccC--cCEEEEEEEcCHHHHHH
Confidence            345678889999999987653111      1222222             24899999976  38999999999999999


Q ss_pred             hhhcCcEEeehhh
Q psy2274         147 VAVIVGTIVDDPR  159 (244)
Q Consensus       147 I~kAGGki~Tidr  159 (244)
                      |+.|||+|.-.+.
T Consensus       133 Ie~aGG~v~l~~~  145 (150)
T d1vqol1         133 VEGAGGSVELTDL  145 (150)
T ss_dssp             HHHTTCEEEECST
T ss_pred             HHHcCCEEEEeec
Confidence            9999999987654

>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Thermus thermophilus [TaxId: 274]

Probab=96.61  E-value=0.00014  Score=57.24  Aligned_cols=37  Identities=14%  Similarity=0.067  Sum_probs=33.2

Q ss_pred             eeecCCcccccCceeEEEeeeccchhhhhhhcCcEEeehh
Q psy2274         119 TIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVDDP  158 (244)
Q Consensus       119 KVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~Tid  158 (244)
                      |||++|.+   .+++|-|-.||++|+++|++|||+|+-++
T Consensus       109 KvLg~Ge~---k~i~I~v~~~SksA~ekIEkaGG~v~il~  145 (146)
T d2j01p1         109 KILGEGEA---KPLKVVAHAFSKSALEKLKAAGGEPVLLE  145 (146)
T ss_dssp             EEECSSCC---CSSCCCCSBCCHHHHHHHHTSCCCCCCCC
T ss_pred             EEecCCce---EeEEEEEEEeCHHHHHHHHHcCCEEEEee
Confidence            89999986   38999999999999999999999997654

>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.52  E-value=0.0002  Score=56.10  Aligned_cols=36  Identities=11%  Similarity=0.043  Sum_probs=32.8

Q ss_pred             eeecCCcccccCceeEEEeeeccchhhhhhhcCcEEee
Q psy2274         119 TIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTIVD  156 (244)
Q Consensus       119 KVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki~T  156 (244)
                      |||++|.+..  +++|-|-.||++|+++|++|||+|+-
T Consensus       104 KiLg~Gel~~--kl~I~v~~~S~sA~~~IE~aGG~V~l  139 (141)
T d2zjri1         104 KLLASGEISR--AVTVHVDAASAAAIKAVEAAGGRVVL  139 (141)
T ss_dssp             EECCCCCCCC--CCCCCCSEECHHHHHHHGGGSCCCCC
T ss_pred             EEccCCcccC--CEEEEEEEeCHHHHHHHHHCCCEEEe
Confidence            8999999874  89999999999999999999999963

>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00017  Score=56.10  Aligned_cols=34  Identities=9%  Similarity=0.093  Sum_probs=31.7

Q ss_pred             eeecCCcccccCceeEEEeeeccchhhhhhhcCcEE
Q psy2274         119 TIVDDPRMWTIPKLTIVRFMKKPTREGRVAVIVGTI  154 (244)
Q Consensus       119 KVldDgrL~eVPKltV~AL~fS~sAr~KI~kAGGki  154 (244)
                      |||++|.|.  .+|+|-|-.||++|+++|++|||+|
T Consensus       106 KiLg~Gel~--~ki~i~~~~~S~sA~~~IE~aGG~V  139 (140)
T d2gycj1         106 KVILAGEVT--TPVTVRGLRVTKGARAAIEAAGGKI  139 (140)
T ss_dssp             BCCCSCCCC--CCCCCCCSCCCTTTSSSSSSSCCCC
T ss_pred             EEeccCccc--CCEEEEEEEeCHHHHHHHHHcCCcc
Confidence            899999987  4899999999999999999999986