Psyllid ID: psy2295

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MHLNLYFFCPNLILCIISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR
Secondary Structure (PSIPRED)
ccccHHHHccccHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHcccEEEEEEEEEEcccccccccccccEEEEEcccccHHHHHHHcccccccccccccccccccccEEEEEEEEEccccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccccccccccccccccEccccccHHHHHHHHHHHccHHHHHHHHccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccEEEEEEEccccccccccccccccccHHHHHHHHHHHccHHHccccccccHHHHcccccccEEEEEEccccEEEEEEEEEEccc
Coil and Loop (DISEMBL)
mhlnlyffcpnLILCIissrnckgnpfclaslgesrwfneqkhdssddfdpdqelrdpnefiglknlgaTCYVNSLLQLWFhnlpfrkavldwnpredseeknnpslgfsgfyepqtAIGHLQMLFALMQHsnkllvdptdfvltlgldrsyQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFacgnetdrSEIFYELVVNVCKTLDESMREFLKEELlegddqyfcnrcgkkqnagrrirlKYLPKVLNLQLMRFVFDR
Flexible Loop (DISEMBL)
MHLNLYFFCPNLILCIISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEEllegddqyfcnrcgkkqnagrrirlkylpkvlnlqlmrfvfdr
Low Complexity Region (SEG)
MHLNLYFFCPNLILCIISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR
Disordered region (IsUnstruct)
**LNLYFFCPNLILCIISSRNCKGNPFCLASLGESRWF*********************EFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWN*************GFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVF**
Disordered Region (DISOPRED)
*HLNLYFFCPNLILCIISSRNCKGNPFCLASLGESRW**********************EFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNP***************GFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNF***************FIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR
Disordered Region (DISEMBL)
MHLNLYFFCPNLILCIISSRNCKGNPFCLASLGESRWFNE***********DQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNP********NPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR
Disordered Region (DISPRO)
MHLNLYFFCPNLILCIISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHLNLYFFCPNLILCIISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q3V0C5	1052	Ubiquitin carboxyl-termin	yes	N/A	0.942	0.247	0.509	1e-64
Q86UV5	1035	Ubiquitin carboxyl-termin	no	N/A	0.942	0.251	0.513	2e-64
Q5ZM45	1033	Ubiquitin carboxyl-termin	yes	N/A	0.916	0.244	0.507	3e-64
Q76LT8	1036	Ubiquitin carboxyl-termin	yes	N/A	0.942	0.250	0.501	2e-63
A3AF13	1079	Ubiquitin carboxyl-termin	no	N/A	0.757	0.193	0.359	1e-33
A2XDG4	1079	Ubiquitin carboxyl-termin	N/A	N/A	0.757	0.193	0.359	1e-33
Q9SCJ9	1067	Ubiquitin carboxyl-termin	yes	N/A	0.858	0.222	0.369	5e-29
Q24574	1556	Ubiquitin carboxyl-termin	yes	N/A	0.724	0.128	0.318	7e-24
Q8BY87	1376	Ubiquitin carboxyl-termin	no	N/A	0.717	0.143	0.325	7e-24
Q96K76	1375	Ubiquitin carboxyl-termin	no	N/A	0.717	0.144	0.330	3e-23

>sp|Q3V0C5|UBP48_MOUSE Ubiquitin carboxyl-terminal hydrolase 48 OS=Mus musculus GN=Usp48 PE=1 SV=2

 Score =  246 bits (628), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 136/267 (50%), Positives = 167/267 (62%), Gaps = 7/267 (2%)

Query: 15  CI--ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATC 71
           CI  +  RNC+GNP CL  +GE  W  E   +S    D P+ E R  N F+GL NLGATC
Sbjct: 39  CIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVGLTNLGATC 98

Query: 72  YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
           YVN+ LQ+WF NL  R+A L   P   S+      +     YEPQT   HLQ LFAL+Q+
Sbjct: 99  YVNTFLQVWFLNLELRQA-LYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQYLFALLQN 157

Query: 132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
           SN+  +DP+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GE
Sbjct: 158 SNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNVVQQQFCGE 216

Query: 192 YVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKK 249
           Y YVT C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  K
Sbjct: 217 YAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFCENCQSK 276

Query: 250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct: 277 QNATRKIRLLSLPCTLNLQLMRFVFDR 303

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. May be involved in the regulation of NF-kappa-B activation by TNF receptor superfamily via its interactions with RELA and TRAF2. May also play a regulatory role at post-synaptic sites.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q86UV5|UBP48_HUMAN Ubiquitin carboxyl-terminal hydrolase 48 OS=Homo sapiens GN=USP48 PE=1 SV=1

 Score =  245 bits (626), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/267 (51%), Positives = 168/267 (62%), Gaps = 7/267 (2%)

Query: 15  CI--ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATC 71
           CI  +  RNCKGNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGATC
Sbjct: 39  CIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATC 98

Query: 72  YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
           YVN+ LQ+WF NL  R+A L   P   S+      +     YEPQT   HLQ LFAL+Q+
Sbjct: 99  YVNTFLQVWFLNLELRQA-LYLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQN 157

Query: 132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
           SN+  +DP+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GE
Sbjct: 158 SNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNIVQQQFCGE 216

Query: 192 YVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKK 249
           Y YVT C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  K
Sbjct: 217 YAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSK 276

Query: 250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct: 277 QNATRKIRLLSLPCTLNLQLMRFVFDR 303

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. May be involved in the regulation of NF-kappa-B activation by TNF receptor superfamily via its interactions with RELA and TRAF2. May also play a regulatory role at post-synaptic sites.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5ZM45|UBP48_CHICK Ubiquitin carboxyl-terminal hydrolase 48 OS=Gallus gallus GN=USP48 PE=2 SV=1

 Score =  245 bits (625), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 132/260 (50%), Positives = 166/260 (63%), Gaps = 7/260 (2%)

Query: 20  RNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATCYVNSLLQ 78
           RNC+GNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGATCYVN+ LQ
Sbjct: 46  RNCRGNPNCLVGIGEHVWLGEIDENSFHNIDDPNCERRKKNAFVGLTNLGATCYVNTFLQ 105

Query: 79  LWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVD 138
           +WF NL  R+A+   +  E +  ++ P       YEPQT   HLQ LFAL+Q+S +  +D
Sbjct: 106 MWFLNLELRQALYLCSSNEHAAGESIPK---DKDYEPQTICEHLQYLFALLQNSKRRYID 162

Query: 139 PTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKC 198
           P+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GEY YVT C
Sbjct: 163 PSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNIVQKQFCGEYAYVTVC 221

Query: 199 FACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRI 256
             CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  KQNA R+I
Sbjct: 222 NQCGRESKLVSKFYELELNIQGHKQLTDCITEFLKEEKLEGDNRYFCETCQSKQNATRKI 281

Query: 257 RLKYLPKVLNLQLMRFVFDR 276
           RL  LP  LNLQLMRFVFDR
Sbjct: 282 RLLSLPCTLNLQLMRFVFDR 301

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q76LT8|UBP48_RAT Ubiquitin carboxyl-terminal hydrolase 48 OS=Rattus norvegicus GN=Usp48 PE=1 SV=1

 Score =  243 bits (619), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 167/267 (62%), Gaps = 7/267 (2%)

Query: 15  CI--ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATC 71
           CI  +  RNC+GNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGA+C
Sbjct: 39  CIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGASC 98

Query: 72  YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
           YVN+ LQ+WF NL  R+A L   P   S+      +     YEPQT   HLQ LFAL+Q+
Sbjct: 99  YVNTFLQVWFLNLELRQA-LYLCPSTCSDYTKGDGIRGGKDYEPQTICEHLQYLFALLQN 157

Query: 132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
           SN+  +DP+ FV  LGLD   QQDAQE SKLF+S  +E+    Q  P ++N ++  F GE
Sbjct: 158 SNRRYIDPSGFVKALGLDTGQQQDAQESSKLFMS-LLEDTLSKQKNPDVRNVVQQQFCGE 216

Query: 192 YVYVTKCFACGNETDRSEIFYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKK 249
           Y YVT C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  K
Sbjct: 217 YAYVTVCSQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFCENCQSK 276

Query: 250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct: 277 QNATRKIRLLSLPCTLNLQLMRFVFDR 303

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. May be involved in the regulation of NF-kappa-B activation by TNF receptor superfamily via its interactions with RELA and TRAF2. May also play a regulatory role at post-synaptic sites.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|A3AF13|UBP26_ORYSJ Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza sativa subsp. japonica GN=UBP26 PE=2 SV=2

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 22/231 (9%)

Query: 50  DPDQELRDPNEF-IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLG 108
           +P  +LRD  E   GL NLGATCY NS+LQ  + N  FR  +    P             
Sbjct: 93  NPSTDLRDSTETPAGLTNLGATCYANSILQCLYMNTSFRLGIFSLEP------------- 139

Query: 109 FSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFV 168
                +    +  L  LFA +  S    +D   F+ TL LD   QQD+ EF  LFLS  +
Sbjct: 140 --DILKMHPVLDQLARLFAQLHSSKMAFIDSAPFIKTLELDNGVQQDSHEFLTLFLS-LL 196

Query: 169 EEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRS---EIFYELVVNV--CKTLD 223
           E       +P  +  ++  F G   +VT+C +CG +++ S   E FYEL +N+     L+
Sbjct: 197 EGSLSHSKVPGARTIVQHLFRGSVSHVTRCSSCGRDSEASSKMEDFYELELNIKGLNNLE 256

Query: 224 ESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVF 274
           +S+ ++L  E L+G++QYFC  C K+ +A R I+L+ LP V+N QL R+VF
Sbjct: 257 QSLDDYLSTEALDGENQYFCESCQKRVDATRCIKLRSLPPVVNFQLKRYVF 307

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Deubiquitinates H2BK143ub1 of histone H2B.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|A2XDG4|UBP26_ORYSI Ubiquitin carboxyl-terminal hydrolase 26 OS=Oryza sativa subsp. indica GN=UBP26 PE=2 SV=1

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 22/231 (9%)

Query: 50  DPDQELRDPNEF-IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLG 108
           +P  +LRD  E   GL NLGATCY NS+LQ  + N  FR  +    P             
Sbjct: 93  NPSTDLRDSTETPAGLTNLGATCYANSILQCLYMNTSFRLGIFSLEP------------- 139

Query: 109 FSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFV 168
                +    +  L  LFA +  S    +D   F+ TL LD   QQD+ EF  LFLS  +
Sbjct: 140 --DILKMHPVLDQLARLFAQLHSSKMAFIDSAPFIKTLELDNGVQQDSHEFLTLFLS-LL 196

Query: 169 EEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRS---EIFYELVVNV--CKTLD 223
           E       +P  +  ++  F G   +VT+C +CG +++ S   E FYEL +N+     L+
Sbjct: 197 EGSLSHSKVPGARTIVQHLFRGSVSHVTRCSSCGRDSEASSKMEDFYELELNIKGLNNLE 256

Query: 224 ESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVF 274
           +S+ ++L  E L+G++QYFC  C K+ +A R I+L+ LP V+N QL R+VF
Sbjct: 257 QSLDDYLSTEALDGENQYFCESCQKRVDATRCIKLRSLPPVVNFQLKRYVF 307

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Deubiquitinates H2BK143ub1 of histone H2B.

Oryza sativa subsp. indica (taxid: 39946)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9SCJ9|UBP26_ARATH Ubiquitin carboxyl-terminal hydrolase 26 OS=Arabidopsis thaliana GN=UBP26 PE=1 SV=3

 Score =  128 bits (321), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 128/268 (47%), Gaps = 31/268 (11%)

Query: 21  NCKGNPFC----LASLGESR----WFNEQKHDSSDDFDPDQELRDPNEF-IGLKNLGATC 71
           N + NP C    +  L  SR    W    +   S   DP  + RD      GL NLGATC
Sbjct: 56  NTRDNPNCFCGLVPPLNGSRKSGLWQKTSEIIQSLGPDPTLDRRDSESTPAGLTNLGATC 115

Query: 72  YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
           Y NS+LQ  + N  FR+ V      E    K NP L              +  LFA +  
Sbjct: 116 YANSILQCLYMNTAFREGVFS---VEVHVLKQNPVLD------------QIARLFAQLHA 160

Query: 132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
           S K  VD   FV TL LD   QQD  EF  L LS     +  + S    K  ++D FSG 
Sbjct: 161 SQKSFVDSDAFVKTLELDNGVQQDTHEFLTLLLSLLE--RCLLHSGVKAKTIVQDLFSGS 218

Query: 192 YVYVTKCFACGNETDRS---EIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRC 246
             +VT C  CG +++ S   E FY L +NV   K+LD S+ ++L  E L GD+QYFC  C
Sbjct: 219 VSHVTTCSKCGRDSEASSKMEDFYALELNVKGLKSLDASLNDYLSLEQLNGDNQYFCGSC 278

Query: 247 GKKQNAGRRIRLKYLPKVLNLQLMRFVF 274
             + +A R I+L+ LP V+  QL R +F
Sbjct: 279 NARVDATRCIKLRTLPPVITFQLKRCIF 306

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Deubiquitinates H2BK143ub1 of histone H2B.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q24574|UBPE_DROME Ubiquitin carboxyl-terminal hydrolase 64E OS=Drosophila melanogaster GN=Ubp64E PE=1 SV=2

 Score =  111 bits (277), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 109/229 (47%), Gaps = 29/229 (12%)

Query: 58  PNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQT 117
           P  ++GL N   TCY+NSLLQ  F    FR A+  W    D+E KN P            
Sbjct: 392 PRGYVGLVNQAMTCYLNSLLQALFMTPEFRNALYRWEFDNDNEAKNIPY----------- 440

Query: 118 AIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRS---YQQDAQEFSKLFLSNFVEEKFRV 174
               LQ LF  +Q S K  V+ TD   + G D +    Q D QE  ++   + +E KF+ 
Sbjct: 441 ---QLQKLFLNLQTSPKAAVETTDLTRSFGWDSTEAWQQHDIQELCRVMF-DALEHKFKN 496

Query: 175 QSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--------CKTLDESM 226
                  N I + + G+     KC  C  E  R + F ++ + V          +++E++
Sbjct: 497 TKQ---ANLISNLYEGKMNDYVKCLECNTEKTREDTFLDIPLPVRPFGSSSAYGSIEEAL 553

Query: 227 REFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
           R F++ E L+G++QY C +C KK +A + +  K  P +L L L RF FD
Sbjct: 554 RAFVQPETLDGNNQYLCEKCKKKCDAHKGLHFKSFPYILTLHLKRFDFD 602

Has an effect on position-effect variegation.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8BY87|UBP47_MOUSE Ubiquitin carboxyl-terminal hydrolase 47 OS=Mus musculus GN=Usp47 PE=1 SV=2

 Score =  111 bits (277), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 117/227 (51%), Gaps = 29/227 (12%)

Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
           ++GL N   TCY+NSLLQ  F    FR A+  W   EDSEE            +P T+I 
Sbjct: 187 YVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWE-FEDSEE------------DPVTSIP 233

Query: 121 H-LQMLFALMQHSNKLLVDPTDFVLTLGLDRS---YQQDAQEFSKLFLSNFVEEKFRVQS 176
           + LQ LF L+Q S K  ++ TD   + G D S    Q D QE  ++   + +E+K++   
Sbjct: 234 YQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMF-DALEQKWKQTE 292

Query: 177 LPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVV--------NVCKTLDESMRE 228
                + I + + G+     +C  CG E  R + + ++ +            +++E++  
Sbjct: 293 QA---DLINELYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYGSSQAFASVEEALHA 349

Query: 229 FLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
           F++ E+L+G +QYFC RC KK +A + +R  + P +L LQL RF FD
Sbjct: 350 FIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDFD 396

Ubiquitin-specific protease that specifically deubiquitinates monoubiquitinated DNA polymerase beta (POLB), stabilizing POLB thereby playing a role in base-excision repair (BER) (By similarity). Acts as a regulator of cell growth and genome integrity. May also indirectly regulates CDC25A expression at a transcriptional level.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q96K76|UBP47_HUMAN Ubiquitin carboxyl-terminal hydrolase 47 OS=Homo sapiens GN=USP47 PE=1 SV=3

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 118/227 (51%), Gaps = 29/227 (12%)

Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
           ++GL N   TCY+NSLLQ  F    FR A+  W   E+SEE            +P T+I 
Sbjct: 187 YVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWE-FEESEE------------DPVTSIP 233

Query: 121 H-LQMLFALMQHSNKLLVDPTDFVLTLGLDRS---YQQDAQEFSKLFLSNFVEEKFRVQS 176
           + LQ LF L+Q S K  ++ TD   + G D S    Q D QE  ++   + +E+K++   
Sbjct: 234 YQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMF-DALEQKWKQTE 292

Query: 177 LPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYE--LVV------NVCKTLDESMRE 228
                + I + + G+     +C  CG E  R + + +  LV+          +++E++  
Sbjct: 293 QA---DLINELYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYGSSQAFASVEEALHA 349

Query: 229 FLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
           F++ E+L+G +QYFC RC KK +A + +R  + P +L LQL RF FD
Sbjct: 350 FIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDFD 396

Ubiquitin-specific protease that specifically deubiquitinates monoubiquitinated DNA polymerase beta (POLB), stabilizing POLB thereby playing a role in base-excision repair (BER). Acts as a regulator of cell growth and genome integrity. May also indirectly regulates CDC25A expression at a transcriptional level.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
328723336	1196	PREDICTED: ubiquitin carboxyl-terminal h	0.927	0.214	0.546	9e-77
321457258	1069	hypothetical protein DAPPUDRAFT_63211 [D	0.923	0.238	0.507	2e-66
328707136	1090	PREDICTED: ubiquitin carboxyl-terminal h	0.902	0.228	0.498	4e-65
327291173	506	PREDICTED: ubiquitin carboxyl-terminal h	0.927	0.505	0.511	8e-64
326671953	1047	PREDICTED: ubiquitin carboxyl-terminal h	0.902	0.237	0.501	1e-63
66267357	514	Zgc:112364 [Danio rerio]	0.902	0.484	0.501	1e-63
390465427	1036	PREDICTED: ubiquitin carboxyl-terminal h	0.942	0.250	0.513	3e-63
296206955	1051	PREDICTED: ubiquitin carboxyl-terminal h	0.942	0.247	0.513	3e-63
296206957	970	PREDICTED: ubiquitin carboxyl-terminal h	0.942	0.268	0.513	3e-63
187608155	1039	ubiquitin specific peptidase 48 [Xenopus	0.920	0.244	0.501	4e-63

>gi|328723336|ref|XP_001942636.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 48-like [Acyrthosiphon pisum]

 Score =  292 bits (748), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 142/260 (54%), Positives = 183/260 (70%), Gaps = 4/260 (1%)

Query: 20  RNCKGNPFCLASLGESRWFNEQKHDSSDDF-DPDQELRDPNEFIGLKNLGATCYVNSLLQ 78
           RNCK NP+CL+ LGE RW  ++     +D+ DP+ E R  N F+GLKNLGATCY+NSLLQ
Sbjct: 47  RNCKNNPYCLSGLGEQRWLQDKVRTPVNDYEDPELERRQNNTFVGLKNLGATCYINSLLQ 106

Query: 79  LWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVD 138
           LWFHN+ FRKA+ +W P EDS E  N SL     Y P+T++GHLQ++FALMQ   +  VD
Sbjct: 107 LWFHNINFRKAIFNWKPEEDSTESQNKSLYAENAYVPETSVGHLQLVFALMQFGKQRSVD 166

Query: 139 PTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKC 198
           P DF+ TL ++ + QQDA EFS LFLS  +E KF  QS   +++ ++D F GEY YVT C
Sbjct: 167 PEDFITTLRINTALQQDAHEFSNLFLS-VLENKFSTQSDASVRDMVRDNFLGEYKYVTTC 225

Query: 199 FACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRI 256
             C  ++ R   FYEL +N+   KTL+ES++EFLKEE L GDDQY+C+ C  KQ+A R+I
Sbjct: 226 LKCKTKSTRPSTFYELDLNIKGHKTLNESLQEFLKEEHLTGDDQYYCDHCNCKQDAVRKI 285

Query: 257 RLKYLPKVLNLQLMRFVFDR 276
            L  LP VLN+QLMRFV+DR
Sbjct: 286 CLTTLPPVLNIQLMRFVYDR 305

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321457258|gb|EFX68348.1| hypothetical protein DAPPUDRAFT_63211 [Daphnia pulex]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 134/264 (50%), Positives = 168/264 (63%), Gaps = 9/264 (3%)

Query: 20  RNCKGNPFCLASLGESRWFNEQKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQL 79
           +NCK NP CL  LGE  W  + K    +  DP   +R    F+GL NLGATCY+NSLLQL
Sbjct: 43  KNCKINPRCLVGLGEKVWLEDLKVTEEEQEDPCDIVRKEGNFVGLTNLGATCYINSLLQL 102

Query: 80  WFHNLPFRKAVLDWNPREDSEEKNNPS---LGFSGFYEPQTAIGHLQMLFALMQHSNKLL 136
           WFHN  FRKA+  W P  D  EK N +   LG  GF  P + +G LQ+LFA MQ S +  
Sbjct: 103 WFHNPIFRKAIYSWVPFFDPSEKENKTLDLLGMGGFI-PNSPVGKLQLLFAQMQFSKRSC 161

Query: 137 VDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVT 196
           V+PT  + +LG+D + QQDAQEFSKLFL N +E+K  +Q+   +   + D F GEY YVT
Sbjct: 162 VNPTSLITSLGIDTTTQQDAQEFSKLFL-NLLEDKLSLQTDMTVSTMVYDQFRGEYEYVT 220

Query: 197 KCFACGNETDRSEIFYELVVNVCK----TLDESMREFLKEELLEGDDQYFCNRCGKKQNA 252
           +C  C  E+     FYEL +++      TLDE + EFL EE LEG DQYFC  C  KQNA
Sbjct: 221 RCSKCQKESSSPSAFYELDLSLGSKSDVTLDECLAEFLHEEKLEGTDQYFCENCSSKQNA 280

Query: 253 GRRIRLKYLPKVLNLQLMRFVFDR 276
            R IRL++LP +LN+QL+RFVFDR
Sbjct: 281 TRSIRLRHLPAMLNIQLLRFVFDR 304

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328707136|ref|XP_003243308.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 48-like [Acyrthosiphon pisum]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 127/255 (49%), Positives = 170/255 (66%), Gaps = 6/255 (2%)

Query: 24  GNPFCLASLGESRWFNEQKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHN 83
            NPFCL+ LGE RW   +         P+ E R  N F GLKNLGATCY+NSLLQLWFHN
Sbjct: 53  NNPFCLSGLGEQRWLQNKVIPIEV---PELERRQTNTFCGLKNLGATCYINSLLQLWFHN 109

Query: 84  LPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFV 143
           L  R A+L+WNP ED  EKNN +L     YEP T +G LQ++FALMQ   +  V+P  F+
Sbjct: 110 LNIRNAILNWNPEEDEIEKNNHTLSIENVYEPVTGVGQLQLVFALMQFGKEQTVNPERFI 169

Query: 144 LTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGN 203
            +L +D S +QDA+EFS L L+  +E KF  Q+   +K+ +K+ F GEY  V  C  C +
Sbjct: 170 KSLKIDTSIEQDAEEFSNLLLTT-LEIKFEKQTNAFVKDMVKNNFLGEYKSVITCLTCKS 228

Query: 204 ETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYL 261
           ++     F ++ +NV   +TL++S++++LKEE+L+GDDQY+C+RC  KQNA R+I L  L
Sbjct: 229 KSYSCSTFRDIGLNVEGRQTLNDSLKDYLKEEVLKGDDQYYCDRCEAKQNAMRQISLTAL 288

Query: 262 PKVLNLQLMRFVFDR 276
           P VLN QLMRFV+DR
Sbjct: 289 PSVLNFQLMRFVYDR 303

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327291173|ref|XP_003230296.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 48-like, partial [Anolis carolinensis]

 Score =  249 bits (636), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 134/262 (51%), Positives = 166/262 (63%), Gaps = 6/262 (2%)

Query: 20  RNCKGNPFCLASLGESRWFNEQKHDSSDDF-DPDQELRDPNEFIGLKNLGATCYVNSLLQ 78
           RNC+GNP CL  +GE  W  E   D+  +  DP+ E R  N F+GL NLGATCYVN+ LQ
Sbjct: 1   RNCRGNPNCLVGIGEQAWLGEIDEDAFHNIEDPNAERRKKNAFVGLTNLGATCYVNTFLQ 60

Query: 79  LWFHNLPFRKAV-LDWNPREDS-EEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLL 136
           +WF NL  R+A+ L  +PR         PS+     YEPQ+   HLQ LFAL+Q S +  
Sbjct: 61  MWFLNLELRQALYLCPSPRPSGPTAAEGPSVSTDQDYEPQSICEHLQYLFALLQSSRRRY 120

Query: 137 VDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVT 196
           +DP+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P +++ ++  F GEY YVT
Sbjct: 121 IDPSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSSQKNPEVRDIVQKQFCGEYAYVT 179

Query: 197 KCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGR 254
            C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  KQNA R
Sbjct: 180 VCNQCGRESKLISKFYELELNIQGHKQLSDCITEFLKEEKLEGDNRYFCETCQSKQNATR 239

Query: 255 RIRLKYLPKVLNLQLMRFVFDR 276
           RIRL  LP  LNLQLMRFVFDR
Sbjct: 240 RIRLLSLPCTLNLQLMRFVFDR 261

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326671953|ref|XP_002667675.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 48 [Danio rerio]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 131/261 (50%), Positives = 170/261 (65%), Gaps = 12/261 (4%)

Query: 20  RNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATCYVNSLLQ 78
           RNCKGNP CL  +GE  W  E   ++  + D P+ E RD N F+GL NLGATCYVN+ LQ
Sbjct: 46  RNCKGNPNCLVGIGEQSWLGEIDENTFHNIDDPNSERRDKNTFVGLTNLGATCYVNTFLQ 105

Query: 79  LWFHNLPFRKAVLDW-NPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLV 137
           +WFHNL  R+A+  + N R +    ++        YEP+T   HLQ LFAL+Q+SN+  +
Sbjct: 106 VWFHNLELRRALYRFQNSRAEGHNTDSD-------YEPRTICEHLQYLFALLQNSNRRYI 158

Query: 138 DPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTK 197
           DP+  V  LGLD   QQDAQEFSKLFLS  +E+    Q  P+++N I+  F G++ YVT 
Sbjct: 159 DPSGLVKALGLDTGQQQDAQEFSKLFLS-LLEDTLSKQKDPNLQNVIQQQFCGQFSYVTV 217

Query: 198 CFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRR 255
           C  CG E+     FYEL +N+   K L E + EFLKEE L+GD++Y+C  C  KQNA RR
Sbjct: 218 CNKCGRESPLPSRFYELELNIQGHKNLTECVTEFLKEEKLDGDNRYYCESCQSKQNATRR 277

Query: 256 IRLKYLPKVLNLQLMRFVFDR 276
           I+L+ LP+ LN QLMRFVFDR
Sbjct: 278 IKLQSLPRTLNFQLMRFVFDR 298

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|66267357|gb|AAH95783.1| Zgc:112364 [Danio rerio]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 131/261 (50%), Positives = 170/261 (65%), Gaps = 12/261 (4%)

Query: 20  RNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATCYVNSLLQ 78
           RNCKGNP CL  +GE  W  E   ++  + D P+ E RD N F+GL NLGATCYVN+ LQ
Sbjct: 46  RNCKGNPNCLVGIGEQSWLGEIDENTFHNIDDPNSERRDKNTFVGLTNLGATCYVNTFLQ 105

Query: 79  LWFHNLPFRKAVLDW-NPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLV 137
           +WFHNL  R+A+  + N R +    ++        YEP+T   HLQ LFAL+Q+SN+  +
Sbjct: 106 VWFHNLELRRALYRFQNSRAEGHNTDSD-------YEPRTICEHLQYLFALLQNSNRRYI 158

Query: 138 DPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTK 197
           DP+  V  LGLD   QQDAQEFSKLFLS  +E+    Q  P+++N I+  F G++ YVT 
Sbjct: 159 DPSGLVKALGLDTGQQQDAQEFSKLFLS-LLEDTLSKQKDPNLQNVIQQQFCGQFSYVTV 217

Query: 198 CFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRR 255
           C  CG E+     FYEL +N+   K L E + EFLKEE L+GD++Y+C  C  KQNA RR
Sbjct: 218 CNKCGRESPLPSRFYELELNIQGHKNLTECVTEFLKEEKLDGDNRYYCESCQSKQNATRR 277

Query: 256 IRLKYLPKVLNLQLMRFVFDR 276
           I+L+ LP+ LN QLMRFVFDR
Sbjct: 278 IKLQSLPRTLNFQLMRFVFDR 298

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|390465427|ref|XP_002750442.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 48 isoform 1 [Callithrix jacchus]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 137/267 (51%), Positives = 169/267 (63%), Gaps = 7/267 (2%)

Query: 15  CI--ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATC 71
           CI  +  RNCKGNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGATC
Sbjct: 39  CIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATC 98

Query: 72  YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
           YVN+ LQ+WF NL  R+A L   P   S+ +    +     YEPQT   HLQ LFAL+Q+
Sbjct: 99  YVNTFLQVWFLNLELRQA-LYLCPSTCSDYRLGDGIQTEKDYEPQTICEHLQYLFALLQN 157

Query: 132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
           SN+  +DP+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GE
Sbjct: 158 SNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNIVQQQFCGE 216

Query: 192 YVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKK 249
           Y YVT C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  K
Sbjct: 217 YAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSK 276

Query: 250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct: 277 QNATRKIRLLSLPCTLNLQLMRFVFDR 303

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296206955|ref|XP_002750443.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 48 isoform 2 [Callithrix jacchus]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 137/267 (51%), Positives = 169/267 (63%), Gaps = 7/267 (2%)

Query: 15  CI--ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATC 71
           CI  +  RNCKGNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGATC
Sbjct: 39  CIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATC 98

Query: 72  YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
           YVN+ LQ+WF NL  R+A L   P   S+ +    +     YEPQT   HLQ LFAL+Q+
Sbjct: 99  YVNTFLQVWFLNLELRQA-LYLCPSTCSDYRLGDGIQTEKDYEPQTICEHLQYLFALLQN 157

Query: 132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
           SN+  +DP+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GE
Sbjct: 158 SNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNIVQQQFCGE 216

Query: 192 YVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKK 249
           Y YVT C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  K
Sbjct: 217 YAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSK 276

Query: 250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct: 277 QNATRKIRLLSLPCTLNLQLMRFVFDR 303

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296206957|ref|XP_002750444.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 48 isoform 3 [Callithrix jacchus]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 137/267 (51%), Positives = 169/267 (63%), Gaps = 7/267 (2%)

Query: 15  CI--ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATC 71
           CI  +  RNCKGNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGATC
Sbjct: 39  CIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATC 98

Query: 72  YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
           YVN+ LQ+WF NL  R+A L   P   S+ +    +     YEPQT   HLQ LFAL+Q+
Sbjct: 99  YVNTFLQVWFLNLELRQA-LYLCPSTCSDYRLGDGIQTEKDYEPQTICEHLQYLFALLQN 157

Query: 132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
           SN+  +DP+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GE
Sbjct: 158 SNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNIVQQQFCGE 216

Query: 192 YVYVTKCFACGNETDRSEIFYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKK 249
           Y YVT C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  K
Sbjct: 217 YAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSK 276

Query: 250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct: 277 QNATRKIRLLSLPCTLNLQLMRFVFDR 303

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|187608155|ref|NP_001120167.1| ubiquitin specific peptidase 48 [Xenopus (Silurana) tropicalis] gi|166796872|gb|AAI59175.1| LOC100145207 protein [Xenopus (Silurana) tropicalis]

 Score =  247 bits (631), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 167/267 (62%), Gaps = 13/267 (4%)

Query: 17  ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATCYVNS 75
           I  RNCKGNP CL  +GE  W  E   ++  + D P+ E R  N F+GL NLGATCYVN+
Sbjct: 43  ICRRNCKGNPNCLVGVGEHIWLGEIDENTFHNIDDPNSERRKKNTFVGLTNLGATCYVNT 102

Query: 76  LLQLWFHNLPFRKAVL----DWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
            +Q+WF N+  R+A+      W     S EK    +     YEPQT   HLQ LFAL+Q+
Sbjct: 103 FVQVWFLNMELRRALYLYENSW-----SAEKAEQCIQEDKEYEPQTICEHLQYLFALLQN 157

Query: 132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
           SN+  +DP+ F+  LGLD   QQDAQEFSKLF+S  +E+    Q  P +KN I++ F G+
Sbjct: 158 SNRRYIDPSSFIKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKEPIVKNIIQEQFCGQ 216

Query: 192 YVYVTKCFACGNETDRSEIFYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKK 249
           Y YVT C  C  E+     FYEL +N+   K L E + EFLKEE LEGD++YFC  C  K
Sbjct: 217 YAYVTICSQCSRESRLVSKFYELELNIQGHKQLTECIAEFLKEEKLEGDNRYFCENCQSK 276

Query: 250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct: 277 QNATRKIRLLDLPPTLNLQLMRFVFDR 303

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
ZFIN|ZDB-GENE-050522-197	1055	usp48 "ubiquitin specific pept	0.920	0.240	0.513	1.4e-63
UNIPROTKB|F1PG27	1036	USP48 "Uncharacterized protein	0.942	0.250	0.513	1.2e-62
UNIPROTKB|E1BF92	1038	USP48 "Uncharacterized protein	0.942	0.250	0.513	1.3e-62
UNIPROTKB|Q86UV5	1035	USP48 "Ubiquitin carboxyl-term	0.942	0.251	0.513	1.6e-62
UNIPROTKB|B7ZKS7	1047	USP48 "Ubiquitin carboxyl-term	0.942	0.248	0.513	1.7e-62
UNIPROTKB|F1M722	1076	Usp48 "Ubiquitin carboxyl-term	0.942	0.241	0.509	2e-62
MGI|MGI:2158502	1052	Usp48 "ubiquitin specific pept	0.942	0.247	0.509	2.9e-62
UNIPROTKB|F1NZX5	989	USP48 "Ubiquitin carboxyl-term	0.916	0.255	0.507	1.5e-61
UNIPROTKB|Q5ZM45	1033	USP48 "Ubiquitin carboxyl-term	0.916	0.244	0.507	2e-61
RGD|735213	1036	Usp48 "ubiquitin specific pept	0.942	0.250	0.501	3.3e-61

ZFIN|ZDB-GENE-050522-197 usp48 "ubiquitin specific peptidase 48" [Danio rerio (taxid:7955)]

 Score = 655 (235.6 bits), Expect = 1.4e-63, P = 1.4e-63
 Identities = 134/261 (51%), Positives = 171/261 (65%)

Query:    20 RNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATCYVNSLLQ 78
             RNCKGNP CL  +GE  W  E   ++  + D P+ E RD N F+GL NLGATCYVN+ LQ
Sbjct:    46 RNCKGNPNCLVGIGEQSWLGEIDENTFHNIDDPNSERRDKNTFVGLTNLGATCYVNTFLQ 105

Query:    79 LWFHNLPFRKAVLDW-NPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLV 137
             +WFHNL  R+A+  + N R  +E  N  S      YEP+T   HLQ LFAL+Q+SN+  +
Sbjct:   106 VWFHNLELRRALYRFQNSR--AEGHNTDSDCIPTDYEPRTICEHLQYLFALLQNSNRRYI 163

Query:   138 DPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTK 197
             DP+  V  LGLD   QQDAQEFSKLFLS  +E+    Q  P+++N I+  F G++ YVT 
Sbjct:   164 DPSGLVKALGLDTGQQQDAQEFSKLFLS-LLEDTLSKQKDPNLQNVIQQQFCGQFSYVTV 222

Query:   198 CFACGNETDRSEIFYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRR 255
             C  CG E+     FYEL +N+   K L E + EFLKEE L+GD++Y+C  C  KQNA RR
Sbjct:   223 CNKCGRESPLPSRFYELELNIQGHKNLTECVTEFLKEEKLDGDNRYYCESCQSKQNATRR 282

Query:   256 IRLKYLPKVLNLQLMRFVFDR 276
             I+L+ LP+ LN QLMRFVFDR
Sbjct:   283 IKLQSLPRTLNFQLMRFVFDR 303

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1PG27 USP48 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 646 (232.5 bits), Expect = 1.2e-62, P = 1.2e-62
 Identities = 137/267 (51%), Positives = 168/267 (62%)

Query:    15 CI--ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATC 71
             CI  +  RNCKGNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGATC
Sbjct:    39 CIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATC 98

Query:    72 YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
             YVN+ LQ+WF NL  R+A L   P   S+      +     YEPQT   HLQ LFAL+Q+
Sbjct:    99 YVNTFLQVWFLNLELRQA-LYLCPSTCSDYMMGDGIQEEKDYEPQTICEHLQYLFALLQN 157

Query:   132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
             SN+  +DP+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GE
Sbjct:   158 SNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNIVQQQFCGE 216

Query:   192 YVYVTKCFACGNETDRSEIFYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKK 249
             Y YVT C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  K
Sbjct:   217 YAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSK 276

Query:   250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
             QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct:   277 QNATRKIRLLSLPCTLNLQLMRFVFDR 303

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|E1BF92 USP48 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 646 (232.5 bits), Expect = 1.3e-62, P = 1.3e-62
 Identities = 137/267 (51%), Positives = 168/267 (62%)

Query:    15 CI--ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATC 71
             CI  +  RNCKGNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGATC
Sbjct:    39 CIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATC 98

Query:    72 YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
             YVN+ LQ+WF NL  R+A L   P   S+      +     YEPQT   HLQ LFAL+Q+
Sbjct:    99 YVNTFLQVWFLNLELRQA-LYLCPSTCSDYMMGDGIQEEKDYEPQTICEHLQYLFALLQN 157

Query:   132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
             SN+  +DP+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GE
Sbjct:   158 SNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNIVQQQFCGE 216

Query:   192 YVYVTKCFACGNETDRSEIFYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKK 249
             Y YVT C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  K
Sbjct:   217 YAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSK 276

Query:   250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
             QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct:   277 QNATRKIRLLSLPCTLNLQLMRFVFDR 303

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|Q86UV5 USP48 "Ubiquitin carboxyl-terminal hydrolase 48" [Homo sapiens (taxid:9606)]

 Score = 645 (232.1 bits), Expect = 1.6e-62, P = 1.6e-62
 Identities = 137/267 (51%), Positives = 168/267 (62%)

Query:    15 CI--ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATC 71
             CI  +  RNCKGNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGATC
Sbjct:    39 CIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATC 98

Query:    72 YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
             YVN+ LQ+WF NL  R+A L   P   S+      +     YEPQT   HLQ LFAL+Q+
Sbjct:    99 YVNTFLQVWFLNLELRQA-LYLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQN 157

Query:   132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
             SN+  +DP+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GE
Sbjct:   158 SNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNIVQQQFCGE 216

Query:   192 YVYVTKCFACGNETDRSEIFYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKK 249
             Y YVT C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  K
Sbjct:   217 YAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSK 276

Query:   250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
             QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct:   277 QNATRKIRLLSLPCTLNLQLMRFVFDR 303

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|B7ZKS7 USP48 "Ubiquitin carboxyl-terminal hydrolase 48" [Homo sapiens (taxid:9606)]

 Score = 645 (232.1 bits), Expect = 1.7e-62, P = 1.7e-62
 Identities = 137/267 (51%), Positives = 168/267 (62%)

Query:    15 CI--ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATC 71
             CI  +  RNCKGNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGATC
Sbjct:    39 CIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATC 98

Query:    72 YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
             YVN+ LQ+WF NL  R+A L   P   S+      +     YEPQT   HLQ LFAL+Q+
Sbjct:    99 YVNTFLQVWFLNLELRQA-LYLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQN 157

Query:   132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
             SN+  +DP+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GE
Sbjct:   158 SNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNIVQQQFCGE 216

Query:   192 YVYVTKCFACGNETDRSEIFYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKK 249
             Y YVT C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  K
Sbjct:   217 YAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSK 276

Query:   250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
             QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct:   277 QNATRKIRLLSLPCTLNLQLMRFVFDR 303

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1M722 Usp48 "Ubiquitin carboxyl-terminal hydrolase 48" [Rattus norvegicus (taxid:10116)]

 Score = 645 (232.1 bits), Expect = 2.0e-62, P = 2.0e-62
 Identities = 136/267 (50%), Positives = 168/267 (62%)

Query:    15 CI--ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATC 71
             CI  +  RNC+GNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGATC
Sbjct:    63 CIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATC 122

Query:    72 YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
             YVN+ LQ+WF NL  R+A L   P   S+      +     YEPQT   HLQ LFAL+Q+
Sbjct:   123 YVNTFLQVWFLNLELRQA-LYLCPSTCSDYTKGDGIRGGKDYEPQTICEHLQYLFALLQN 181

Query:   132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
             SN+  +DP+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GE
Sbjct:   182 SNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNVVQQQFCGE 240

Query:   192 YVYVTKCFACGNETDRSEIFYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKK 249
             Y YVT C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  K
Sbjct:   241 YAYVTVCSQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFCENCQSK 300

Query:   250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
             QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct:   301 QNATRKIRLLSLPCTLNLQLMRFVFDR 327

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

MGI|MGI:2158502 Usp48 "ubiquitin specific peptidase 48" [Mus musculus (taxid:10090)]

 Score = 643 (231.4 bits), Expect = 2.9e-62, P = 2.9e-62
 Identities = 136/267 (50%), Positives = 167/267 (62%)

Query:    15 CI--ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATC 71
             CI  +  RNC+GNP CL  +GE  W  E   +S    D P+ E R  N F+GL NLGATC
Sbjct:    39 CIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHSIDDPNCERRKKNSFVGLTNLGATC 98

Query:    72 YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
             YVN+ LQ+WF NL  R+A L   P   S+      +     YEPQT   HLQ LFAL+Q+
Sbjct:    99 YVNTFLQVWFLNLELRQA-LYLCPSTCSDYTKGDGIHGGKDYEPQTICEHLQYLFALLQN 157

Query:   132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
             SN+  +DP+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GE
Sbjct:   158 SNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNVVQQQFCGE 216

Query:   192 YVYVTKCFACGNETDRSEIFYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKK 249
             Y YVT C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  K
Sbjct:   217 YAYVTVCNQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFCENCQSK 276

Query:   250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
             QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct:   277 QNATRKIRLLSLPCTLNLQLMRFVFDR 303

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0045121 "membrane raft" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=ISO

UNIPROTKB|F1NZX5 USP48 "Ubiquitin carboxyl-terminal hydrolase 48" [Gallus gallus (taxid:9031)]

 Score = 635 (228.6 bits), Expect = 1.5e-61, P = 1.5e-61
 Identities = 132/260 (50%), Positives = 166/260 (63%)

Query:    20 RNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATCYVNSLLQ 78
             RNC+GNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGATCYVN+ LQ
Sbjct:     2 RNCRGNPNCLVGIGEHVWLGEIDENSFHNIDDPNCERRKKNAFVGLTNLGATCYVNTFLQ 61

Query:    79 LWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVD 138
             +WF NL  R+A+   +  E +  ++ P       YEPQT   HLQ LFAL+Q+S +  +D
Sbjct:    62 MWFLNLELRQALYLCSSNEHAAGESIPK---DKDYEPQTICEHLQYLFALLQNSKRRYID 118

Query:   139 PTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKC 198
             P+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GEY YVT C
Sbjct:   119 PSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNIVQKQFCGEYAYVTVC 177

Query:   199 FACGNETDRSEIFYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRI 256
               CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  KQNA R+I
Sbjct:   178 NQCGRESKLVSKFYELELNIQGHKQLTDCITEFLKEEKLEGDNRYFCETCQSKQNATRKI 237

Query:   257 RLKYLPKVLNLQLMRFVFDR 276
             RL  LP  LNLQLMRFVFDR
Sbjct:   238 RLLSLPCTLNLQLMRFVFDR 257

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q5ZM45 USP48 "Ubiquitin carboxyl-terminal hydrolase 48" [Gallus gallus (taxid:9031)]

 Score = 635 (228.6 bits), Expect = 2.0e-61, P = 2.0e-61
 Identities = 132/260 (50%), Positives = 166/260 (63%)

Query:    20 RNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATCYVNSLLQ 78
             RNC+GNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGATCYVN+ LQ
Sbjct:    46 RNCRGNPNCLVGIGEHVWLGEIDENSFHNIDDPNCERRKKNAFVGLTNLGATCYVNTFLQ 105

Query:    79 LWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVD 138
             +WF NL  R+A+   +  E +  ++ P       YEPQT   HLQ LFAL+Q+S +  +D
Sbjct:   106 MWFLNLELRQALYLCSSNEHAAGESIPK---DKDYEPQTICEHLQYLFALLQNSKRRYID 162

Query:   139 PTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKC 198
             P+ FV  LGLD   QQDAQEFSKLF+S  +E+    Q  P ++N ++  F GEY YVT C
Sbjct:   163 PSGFVKALGLDTGQQQDAQEFSKLFMS-LLEDTLSKQKNPDVRNIVQKQFCGEYAYVTVC 221

Query:   199 FACGNETDRSEIFYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRI 256
               CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  KQNA R+I
Sbjct:   222 NQCGRESKLVSKFYELELNIQGHKQLTDCITEFLKEEKLEGDNRYFCETCQSKQNATRKI 281

Query:   257 RLKYLPKVLNLQLMRFVFDR 276
             RL  LP  LNLQLMRFVFDR
Sbjct:   282 RLLSLPCTLNLQLMRFVFDR 301

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|735213 Usp48 "ubiquitin specific peptidase 48" [Rattus norvegicus (taxid:10116)]

 Score = 633 (227.9 bits), Expect = 3.3e-61, P = 3.3e-61
 Identities = 134/267 (50%), Positives = 167/267 (62%)

Query:    15 CI--ISSRNCKGNPFCLASLGESRWFNEQKHDSSDDFD-PDQELRDPNEFIGLKNLGATC 71
             CI  +  RNC+GNP CL  +GE  W  E   +S  + D P+ E R  N F+GL NLGA+C
Sbjct:    39 CIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGASC 98

Query:    72 YVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH 131
             YVN+ LQ+WF NL  R+A L   P   S+      +     YEPQT   HLQ LFAL+Q+
Sbjct:    99 YVNTFLQVWFLNLELRQA-LYLCPSTCSDYTKGDGIRGGKDYEPQTICEHLQYLFALLQN 157

Query:   132 SNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGE 191
             SN+  +DP+ FV  LGLD   QQDAQE SKLF+S  +E+    Q  P ++N ++  F GE
Sbjct:   158 SNRRYIDPSGFVKALGLDTGQQQDAQESSKLFMS-LLEDTLSKQKNPDVRNVVQQQFCGE 216

Query:   192 YVYVTKCFACGNETDRSEIFYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKK 249
             Y YVT C  CG E+     FYEL +N+   K L + + EFLKEE LEGD++YFC  C  K
Sbjct:   217 YAYVTVCSQCGRESKLVSKFYELELNIQGHKQLTDCISEFLKEERLEGDNRYFCENCQSK 276

Query:   250 QNAGRRIRLKYLPKVLNLQLMRFVFDR 276
             QNA R+IRL  LP  LNLQLMRFVFDR
Sbjct:   277 QNATRKIRLLSLPCTLNLQLMRFVFDR 303

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0045121 "membrane raft" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3V0C5	UBP48_MOUSE	3, ., 4, ., 1, 9, ., 1, 2	0.5093	0.9420	0.2471	yes	N/A
Q5ZM45	UBP48_CHICK	3, ., 4, ., 1, 9, ., 1, 2	0.5076	0.9166	0.2449	yes	N/A
Q76LT8	UBP48_RAT	3, ., 4, ., 1, 9, ., 1, 2	0.5018	0.9420	0.2509	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	0.691
3rd Layer	3.4.19.12	0.737

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	276
cd02668	324	cd02668, Peptidase_C19L, A subfamily of Peptidase	6e-89
cd02659	334	cd02659, peptidase_C19C, A subfamily of Peptidase	3e-52
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	2e-31
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	2e-26
cd02664	327	cd02664, Peptidase_C19H, A subfamily of Peptidase	1e-25
cd02663	300	cd02663, Peptidase_C19G, A subfamily of Peptidase	5e-25
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	9e-23
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	1e-21
COG5533	415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	5e-18
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	8e-18
cd02671	332	cd02671, Peptidase_C19O, A subfamily of Peptidase	6e-17
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	8e-15
COG5207	749	COG5207, UBP14, Isopeptidase T [Posttranslational	6e-12
cd02667	279	cd02667, Peptidase_C19K, A subfamily of Peptidase	9e-12
cd02666	343	cd02666, Peptidase_C19J, A subfamily of Peptidase	1e-11
cd02657	305	cd02657, Peptidase_C19A, A subfamily of Peptidase	4e-11
pfam13423	296	pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr	6e-10
cd02658	311	cd02658, Peptidase_C19B, A subfamily of Peptidase	1e-08
COG5560	823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	1e-05
COG5560	823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	4e-05
cd02662	240	cd02662, Peptidase_C19F, A subfamily of Peptidase	3e-04

>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19

 Score =  266 bits (683), Expect = 6e-89
 Identities = 123/216 (56%), Positives = 145/216 (67%), Gaps = 6/216 (2%)

Query: 63  GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
           GLKNLGATCYVNS LQLWF NL FRKAV + N  ED+E KN P       +EPQT I  L
Sbjct: 1   GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPP---DKPHEPQTIIDQL 57

Query: 123 QMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKN 182
           Q++FA +Q  N+ +VDP+ FV  LGLD   QQDAQEFSKLFLS  +E K      P +KN
Sbjct: 58  QLIFAQLQFGNRSVVDPSGFVKALGLDTGQQQDAQEFSKLFLS-LLEAKLSKSKNPDLKN 116

Query: 183 FIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQ 240
            ++D F GEY YVT+C  CG E+     FYEL + +   KTL+E + EFLKEE L GD+Q
Sbjct: 117 IVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQ 176

Query: 241 YFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           YFC  C  K +A RRIRL  LP  LN QL+RFVFDR
Sbjct: 177 YFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDR 212

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324

>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19

 Score =  173 bits (440), Expect = 3e-52
 Identities = 81/222 (36%), Positives = 113/222 (50%), Gaps = 24/222 (10%)

Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
           ++GLKN GATCY+NSLLQ  +    FR AV    P ED ++  +  L             
Sbjct: 2   YVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPL------------- 48

Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQ 175
            LQ LF  +Q S   +        T       L+   Q D QEF ++     +EEK +  
Sbjct: 49  ALQRLFLFLQLSESPVKTTELTDKTRSFGWDSLNTFEQHDVQEFFRVLFDK-LEEKLKGT 107

Query: 176 SLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEE 233
               +   IK+ F G+ V    C  C +E++R E F +L V V   K L+ES+  +++ E
Sbjct: 108 GQEGL---IKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKGKKNLEESLDAYVQGE 164

Query: 234 LLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
            LEGD++YFC +CGKK +A + +  K LP VL LQL RF FD
Sbjct: 165 TLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFD 206

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 334

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score =  118 bits (297), Expect = 2e-31
 Identities = 70/229 (30%), Positives = 96/229 (41%), Gaps = 27/229 (11%)

Query: 59  NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTA 118
               GL NLG TCY+NS+LQ  F   P R  +L  +    +   +   L           
Sbjct: 1   EGPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQL----------- 49

Query: 119 IGHLQMLFALMQHSNKLL--VDPTDFVLTLGLD----RSY-QQDAQEFSKLFLSNFVEEK 171
              L  LF  +Q  N     V P +F+  LG        Y QQDA EF  LFL + + E 
Sbjct: 50  PRALADLFHALQSPNSKNASVSPKNFLQALGKISPQFSGYMQQDAHEFL-LFLLDQLHED 108

Query: 172 FRVQSLPHIKNF-----IKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV---CKTLD 223
                            I   F G+     KC  C  E+   E F +L + +      L 
Sbjct: 109 LNSLKKRKSHAAENESLITKLFQGQLESRLKCLKCKKESSTPEPFSDLSLPIEDSSSVLK 168

Query: 224 ESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRF 272
                FLK E LE +++Y+C +CG KQNA +++ +  LP VL + L RF
Sbjct: 169 LLTGNFLKLEELEKEEKYYCPKCGGKQNAIKKLDISRLPPVLIIHLKRF 217

Length = 313

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score =  108 bits (271), Expect = 2e-26
 Identities = 72/220 (32%), Positives = 112/220 (50%), Gaps = 25/220 (11%)

Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
           ++GL+N GATCY+NSLLQ  F    FRK V    P +    +++ +L             
Sbjct: 193 YVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGI-PTDHPRGRDSVALA------------ 239

Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL 177
            LQ LF  +Q   +  VD T+   + G    D   Q D QEF+++   N +E+  R    
Sbjct: 240 -LQRLFYNLQTGEE-PVDTTELTRSFGWDSDDSFMQHDIQEFNRVLQDN-LEKSMRGTV- 295

Query: 178 PHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELL 235
             ++N +   F G+     KC     E+ R E F+++ +NV   K L ES R +++ E L
Sbjct: 296 --VENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVKGMKNLQESFRRYIQVETL 353

Query: 236 EGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
           +GD++Y   + G  Q+A + +  + LP VL+LQL RF +D
Sbjct: 354 DGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKRFEYD 392

Length = 1089

>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19

 Score =  102 bits (257), Expect = 1e-25
 Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 32/218 (14%)

Query: 63  GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
           GL NLG TCY+NS+LQ  F    FR+ VL  N        ++ S+              L
Sbjct: 1   GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNL---PRLGDSQSVMKK-----------L 46

Query: 123 QMLFALMQHSNKLLVDPTDFVLTLGLDRS----YQQDAQEFSKLFLSNFVEEKFRVQSLP 178
           Q+L A + H+ +    P D+ L            QQD  E+ +  L        R+ +L 
Sbjct: 47  QLLQAHLMHTQRRAEAPPDYFLEASRPPWFTPGSQQDCSEYLRYLLD-------RLHTL- 98

Query: 179 HIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGD 238
                I+  F G+     +C  C + + R+E F +L ++   ++ + +  FL  E L GD
Sbjct: 99  -----IEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-SVQDLLNYFLSPEKLTGD 152

Query: 239 DQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           +QY+C +C   Q+A + +++   P+ L L L+RF +D+
Sbjct: 153 NQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQ 190

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 327

>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19

 Score =  100 bits (252), Expect = 5e-25
 Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 57/236 (24%)

Query: 63  GLKNLGATCYVNSLLQ-LWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGH 121
           GL+N G TCY NS+LQ L+F NL                         +           
Sbjct: 1   GLENFGNTCYCNSVLQALYFENL------------------------LTC---------- 26

Query: 122 LQMLFALMQHSNKL--LVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVE----E 170
           L+ LF  +    K   ++ P  F+  L       D    QDA EF    L+   E    E
Sbjct: 27  LKDLFESISEQKKRTGVISPKKFITRLKRENELFDNYMHQDAHEFLNFLLNEIAEILDAE 86

Query: 171 KFRVQSL---------PHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCK- 220
           +   ++               ++ + F G     T+C  C   + R E F +L ++V + 
Sbjct: 87  RKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQN 146

Query: 221 -TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
            ++   +R+F   E L G ++++C+ C   Q A +R+++K LPK+L L L RF +D
Sbjct: 147 TSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYD 202

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 93.7 bits (233), Expect = 9e-23
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 13/135 (9%)

Query: 153 QQDAQEFSKLFLSNFVEEKFRVQSLPHI-----KNFIKDYFSGEYVYVTKCFACGNETDR 207
           QQDA EF  LFL + + E+ +  S         K+ I D F G+      C  CG+E+  
Sbjct: 22  QQDAHEFL-LFLLDKLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVS 80

Query: 208 SEIFYELVVNV------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYL 261
           +E    L + +        +L++ + +F KEE+LEGD+ Y C +  KKQ A +R+++K L
Sbjct: 81  TEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCYKCEKK-KKQEATKRLKIKKL 139

Query: 262 PKVLNLQLMRFVFDR 276
           P VL + L RF F+ 
Sbjct: 140 PPVLIIHLKRFSFNE 154

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score = 90.0 bits (224), Expect = 1e-21
 Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 21/132 (15%)

Query: 153 QQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFY 212
           QQDAQEF  LFL            L  + + I D F G+      C  CG  +   E F 
Sbjct: 22  QQDAQEFL-LFL------------LDGLHSIIVDLFQGQLKSRLTCLTCGKTSTTFEPFT 68

Query: 213 ELVVNVCK--------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKV 264
            L + +          TL++ +R F KEE L+GD+ + C +C KK+ A +++ +  LPKV
Sbjct: 69  YLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKV 128

Query: 265 LNLQLMRFVFDR 276
           L + L RF F R
Sbjct: 129 LIIHLKRFSFSR 140

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 82.8 bits (204), Expect = 5e-18
 Identities = 65/279 (23%), Positives = 100/279 (35%), Gaps = 61/279 (21%)

Query: 38  FNEQKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFH----NLPFRKAVLDW 93
            N +K   S   D            GL+N G TCY+N  LQ        N   +      
Sbjct: 55  ANPKKMVVSKRKDNLPP-------NGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQ 107

Query: 94  NPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTL-GLDRSY 152
           N   D       S  F  F            L+          + P +F+  L G ++ +
Sbjct: 108 NINTDFPRGKPGSNAFKQF----------IALYETPGCHGPKSISPRNFIDILSGRNKLF 157

Query: 153 ----QQDAQEFSKLFLSNF----------------------VEEKFRVQSLPHI------ 180
               QQD+QEF   FL                         V E+  +    H       
Sbjct: 158 SGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHL 217

Query: 181 ---KNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCKT----LDESMREFLKEE 233
              K+ +   F G+     +C AC   +    +F  L+V   +     L E +  F +EE
Sbjct: 218 RSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEE 277

Query: 234 LLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRF 272
            LEG D + C +CG+K+++ +R+ +  LP VL + + RF
Sbjct: 278 KLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRF 316

Length = 415

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 81.2 bits (201), Expect = 8e-18
 Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 28/229 (12%)

Query: 63  GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
           GL+NLG TC++NS+LQ   H  P    +L    RE S++  N   GF      +    H+
Sbjct: 3   GLQNLGNTCFLNSVLQCLTHTPPLANYLLS---REHSKDCCNE--GFCMMCALEA---HV 54

Query: 123 QMLFALMQHSNKLLVDPTDFVLTL-----GLDRSYQQDAQEFSKLF--------LSNFVE 169
           +   A     +     P  F   L           Q+DA EF +          L  F +
Sbjct: 55  ERALASSGPGSA----PRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKK 110

Query: 170 EKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCK--TLDESMR 227
            K    S       ++  F G      KC  C + ++  + F +L +++    +L++++ 
Sbjct: 111 LKAVDPSSQE-TTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGADSLEDALE 169

Query: 228 EFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           +F K E L+G+++Y C RC KK  A +++ +   P VL + L RF   R
Sbjct: 170 QFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFR 218

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19

 Score = 78.8 bits (194), Expect = 6e-17
 Identities = 65/243 (26%), Positives = 98/243 (40%), Gaps = 61/243 (25%)

Query: 59  NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTA 118
             F+GL NLG TCY+NS+LQ           VL + P      K+  SL  S        
Sbjct: 22  LPFVGLNNLGNTCYLNSVLQ-----------VLYFCPGFKHGLKHLVSLISS-------- 62

Query: 119 IGHLQMLFALM--QHSNKLLVDPTDFVLTL--GLDRSY----QQDAQEFSKLFLSNFVEE 170
           +  LQ  F L   +++++L       +L     ++  Y    Q DAQE  +  L N    
Sbjct: 63  VEQLQSSFLLNPEKYNDELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGN---- 118

Query: 171 KFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV------------ 218
                    I+  ++  F G+ V  T+C  C   T+R E F ++ V V            
Sbjct: 119 ---------IQELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESS 169

Query: 219 ---------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQL 269
                     KTL  ++ +F   E + G+D+YFC  C     A R +    LP+V+ + L
Sbjct: 170 EISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHL 229

Query: 270 MRF 272
             F
Sbjct: 230 KCF 232

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 332

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 72.8 bits (179), Expect = 8e-15
 Identities = 65/240 (27%), Positives = 85/240 (35%), Gaps = 44/240 (18%)

Query: 63  GLKNLGATCYVNSLLQLWFHNLPFRKAVL--DWNPREDSEEKNNPSLG------FSGFYE 114
           GL NLGATC++N +LQ   HN   R   L    +    S   N+  L       F  FY 
Sbjct: 2   GLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNS-CLSCAMDEIFQEFYY 60

Query: 115 PQTAIGH-LQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFR 173
                 +    L  L    ++ L                QQDA EF +  L         
Sbjct: 61  SGDRSPYGPINLLYLSWKHSRNLAG------------YSQQDAHEFFQFLLDQLHTHYGG 108

Query: 174 V----QSLPHIKNFIKDYFSGEYVYVTKCFACG-----------------NETDRSEIFY 212
                    H    I   FSG       C  CG                 N++  S    
Sbjct: 109 DKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSWALG 168

Query: 213 ELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRF 272
           E  V+   TL + +  F + E L GD  Y C+ CG  Q A +++ +K LP VL  QL RF
Sbjct: 169 ESGVSGTPTLSDCLDRFTRPEKL-GDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRF 227

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

 Score = 65.1 bits (158), Expect = 6e-12
 Identities = 57/248 (22%), Positives = 97/248 (39%), Gaps = 47/248 (18%)

Query: 46  SDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNP 105
                  +    P+ ++GL NLG +CY++S++Q          AV               
Sbjct: 288 KKRAPESKGESVPSPYVGLINLGNSCYLSSVIQSLVGY-----AVSKE------------ 330

Query: 106 SLGFSGFYEPQTAIGHLQMLFA-LMQHSNKLL----------VDPTDFVLTLGLD----- 149
                  +E       L+ LF  LM+  +K+           + P DF + +G D     
Sbjct: 331 EFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPDNEYVNGISPLDFKMLIGQDHPEFG 390

Query: 150 RSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSE 209
           +  QQDA EF  LFL   + +  R   +P I +   ++     +    C  C        
Sbjct: 391 KFAQQDAHEFL-LFLLEKIRKGERSYLIPPITSLF-EFEVERRL---SCSGCM----DVS 441

Query: 210 IFYELVVNVCKTLDE-----SMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKV 264
             YE ++ +C  L+       +R+ ++   L    ++ C  C  K+ A R+  +K LPK 
Sbjct: 442 YSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIEWSCENCKGKKKASRKPFIKSLPKY 501

Query: 265 LNLQLMRF 272
           L LQ+ R+
Sbjct: 502 LILQVGRY 509

Length = 749

>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19

 Score = 63.6 bits (155), Expect = 9e-12
 Identities = 46/216 (21%), Positives = 80/216 (37%), Gaps = 62/216 (28%)

Query: 63  GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
           GL NLG TC+ N+++Q      P  + +L   P+E   +    +  F G+          
Sbjct: 1   GLSNLGNTCFFNAVMQNLSQ-TPALRELLSETPKELFSQVCRKAPQFKGYQ--------- 50

Query: 123 QMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKN 182
                                         QQD+ E  +  L               ++ 
Sbjct: 51  ------------------------------QQDSHELLRYLLDG-------------LRT 67

Query: 183 FIKDYFSGEYVYVTKCFACGNETDRSEIFYEL------VVNVCKTLDESMREFLKEELLE 236
           FI   F GE      C +CG  +   E F +L       +    +++  +++F + E+LE
Sbjct: 68  FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILE 127

Query: 237 GDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRF 272
           G++++ C  C     A ++  +  LP VL + L RF
Sbjct: 128 GNNKFACENC---TKAKKQYLISKLPPVLVIHLKRF 160

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 279

>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 25/202 (12%)

Query: 62  IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPS---LG-----FSGFY 113
            GL N+G TCY+NSLLQ +F   P R  VL+++  +     + P+   +G      S   
Sbjct: 2   AGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQ 61

Query: 114 EPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNF-VEEKF 172
                +  L+ LF  + HSN   V P+  +  L L    QQD  E     L    V  + 
Sbjct: 62  RSNQFVYELRSLFNDLIHSNTRSVTPSKELAYLALR---QQDVTECIDNVLFQLEVALEP 118

Query: 173 R--------VQSLPHIKNFIKDYFSGEY----VYVTKCFACGNETDRSEIFYELVVNVCK 220
                     +      + IK  FSG+     V  +        T ++E F  L+V+V K
Sbjct: 119 ISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPESMGNQPSVRT-KTERFLSLLVDVGK 177

Query: 221 TLDESMREFLKEELLEGDDQYF 242
              E +     ++L +  D+YF
Sbjct: 178 KGREIVVLLEPKDLYDALDRYF 199

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 343

>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 61/226 (26%), Positives = 94/226 (41%), Gaps = 35/226 (15%)

Query: 63  GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
           GL NLG TCY+NS LQ        R A+ ++NP      +++ +L  +           L
Sbjct: 1   GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNA-----------L 49

Query: 123 QMLFALMQHSNKLLVDPTDFVLTL----------GLDRSY-QQDAQE-FSKLF--LSNFV 168
           + LF  M    +  V P +F+  L               Y QQDA+E +S+L   LS  +
Sbjct: 50  RDLFDTMDKKQE-PVPPIEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKL 108

Query: 169 EEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRS-EIFYELVVNV-CKTLDESM 226
                  S      FI   F  E     KC    +E + S E  Y+L  ++   T    +
Sbjct: 109 PGAGSKGS------FIDQLFGIELETKMKCTESPDEEEVSTESEYKLQCHISITTEVNYL 162

Query: 227 REFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRF 272
           ++ LK+  LE + +      G+     +  R+  LPK L +Q +RF
Sbjct: 163 QDGLKKG-LEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFVRF 207

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 305

>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 54/228 (23%), Positives = 83/228 (36%), Gaps = 37/228 (16%)

Query: 63  GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
           GL+N G  CY+N+LLQL F   P   A+L  +     E      LGF             
Sbjct: 2   GLENNGPNCYLNALLQLMFFIPPLFNAILRHSADCPKENCLLCELGF------------- 48

Query: 123 QMLFALMQHSNKLLVDPTDFVLTLGLDRSY-----QQDAQEFSKLFL-------SNFVEE 170
             LF ++  S       T+ + T            QQD QE ++  L            +
Sbjct: 49  --LFDMLDKSTGQNCQATNLLRTFSGIPEAAALGLQQDIQEANRFILEQLSLPLLTLKPD 106

Query: 171 KFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVV-------NVCKTLD 223
            F  +      + +   F   ++   +C +CGNE+ + E    L +          +T  
Sbjct: 107 IFHNRCTGESGDSLDSLFGTSFISSIRCDSCGNESVKEEPLLTLELPYPPIDKPQGRTFS 166

Query: 224 ESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMR 271
             +   L  E     ++  CN C K   A  R  +K LP +L + L R
Sbjct: 167 NILERSLNREK---INRITCNSCRKYSLANSRKHVKSLPPILGICLKR 211

Length = 296

>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 56/255 (21%), Positives = 91/255 (35%), Gaps = 70/255 (27%)

Query: 63  GLKNLGATCYVNSLLQLWFHNLP------------FRKAVLDWNPRED------------ 98
           GL+NLG +CY+NS+LQ+ F ++P            F   V+D  P  D            
Sbjct: 1   GLRNLGNSCYLNSVLQVLF-SIPSFQWRYDDLENKFPSDVVD--PANDLNCQLIKLADGL 57

Query: 99  -SEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQ 157
            S   + P+   S     Q  I    M  AL+   +       +F          QQDA 
Sbjct: 58  LSGRYSKPASLKSENDPYQVGI-KPSMFKALIGKGHP------EF------STMRQQDAL 104

Query: 158 EFSKLFLSNFVEEKFRVQSLPHIKNFIK--DYFSGEYVYVTKCFACGNETDRSEIFYELV 215
           EF  L L + ++ +          N      +   + +   +C +C      SE+   L 
Sbjct: 105 EFL-LHLIDKLDRESFKN---LGLNPNDLFKFMIEDRL---ECLSCKKVKYTSELSEILS 157

Query: 216 VNVCK----------------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLK 259
           + V K                 L++ ++ +   E +E     FC+ C +K  A +    K
Sbjct: 158 LPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFK 213

Query: 260 YLPKVLNLQLMRFVF 274
             P  L + + RF  
Sbjct: 214 TFPDYLVINMKRFQL 228

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 311

>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 63  GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
           GL+NLG TCY+NS LQ   H    R   L  +  E+S  + NP LG  G          +
Sbjct: 267 GLRNLGNTCYMNSALQCLMHTWELRDYFL-SDEYEESINEENP-LGMHG-SVASAYADLI 323

Query: 123 QMLFALMQHSNKLLVDPTDFVLTLGLDRSY-----QQDAQEFSKLFLSNFVEEKFRVQSL 177
           + L+    H+      P+ F  T+G          QQD+QEF    L    E+  R+   
Sbjct: 324 KQLYDGNLHA----FTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKK 379

Query: 178 PH 179
           P+
Sbjct: 380 PY 381

Length = 823

>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 221 TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           TL + + EF K E L   D ++C  C + + A +++ L  LP +L + L RF   R
Sbjct: 676 TLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVR 731

Length = 823

>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 32/132 (24%)

Query: 153 QQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACG-NETDRSEIF 211
           QQDA E  ++ L         ++ L       K  F G       C  CG +   R E F
Sbjct: 34  QQDAHELFQVLLE-------TLEQLL------KFPFDGLLASRIVCLQCGESSKVRYESF 80

Query: 212 YELVVNVCK-------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKV 264
             L + V         TL+  + +FL  E+++    Y C+RC        +  +  LP++
Sbjct: 81  TMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQI 129

Query: 265 LNLQLMRFVFDR 276
           L + L R VFD 
Sbjct: 130 LCIHLSRSVFDG 141

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	100.0
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	100.0
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	100.0
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	100.0
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	100.0
KOG1865|consensus	545		100.0
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	100.0
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	100.0
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	100.0
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	100.0
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	100.0
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	100.0
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	100.0
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	100.0
KOG1866|consensus	944		100.0
KOG1863|consensus	1093		100.0
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	100.0
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	100.0
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	100.0
KOG0944|consensus	763		100.0
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	99.97
KOG1868|consensus	653		99.97
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.97
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	99.96
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	99.96
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	99.95
KOG1873|consensus	877		99.95
KOG4598|consensus	1203		99.95
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	99.94
KOG1867|consensus	492		99.94
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	99.93
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	99.92
KOG1870|consensus	842		99.91
KOG1864|consensus	587		99.87
KOG2026|consensus	442		99.84
KOG1871|consensus	420		99.82
KOG1872|consensus	473		99.72
cd02670	241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	99.55
KOG1275|consensus	1118		99.45
KOG1864|consensus	587		98.06
PF15499	275	Peptidase_C98: Ubiquitin-specific peptidase-like,	96.97
PF05408	193	Peptidase_C28: Foot-and-mouth virus L-proteinase;	94.82
PF08715	320	Viral_protease: Papain like viral protease; InterP	91.64
PF14353	128	CpXC: CpXC protein	90.09

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=100.00  E-value=8.8e-48  Score=339.89  Aligned_cols=210  Identities=59%  Similarity=0.956  Sum_probs=186.0

Q ss_pred             cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHH
Q psy2295          63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDF  142 (276)
Q Consensus        63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~  142 (276)
                      ||.|+||||||||+||+|+++|+||++++.............+   ........+++.+|+.||.+|+.+....++|..|
T Consensus         1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f   77 (324)
T cd02668           1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMP---PDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGF   77 (324)
T ss_pred             CcccCCceeHHHHHHHHHHCCHHHHHHHHccCccccccccccc---ccCCcccchHHHHHHHHHHHHHhCCCceEChHHH
Confidence            9999999999999999999999999999987654321111000   0011123579999999999999998899999999


Q ss_pred             HHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc--cc
Q psy2295         143 VLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CK  220 (276)
Q Consensus       143 ~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i--~~  220 (276)
                      +.++++..++||||+||+..||+ .|++++....++...+++.++|.|++.+.++|..|+..+.+.|+|+.|+|+|  ..
T Consensus        78 ~~~l~~~~~~QqDa~EFl~~lLd-~L~~~l~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~~  156 (324)
T cd02668          78 VKALGLDTGQQQDAQEFSKLFLS-LLEAKLSKSKNPDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKGHK  156 (324)
T ss_pred             HHHhCCCCccccCHHHHHHHHHH-HHHHHHhhccCCcccchhhhhcceEEEEEEEeCCCCCccccccccEEEEEEecccC
Confidence            99999999999999999999999 9999987655555678999999999999999999999999999999999999  68


Q ss_pred             cHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295         221 TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       221 sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                      +|+++|+.|+.+|.++|+|+|.|++|++++.|.|+..|.++|+||+|||+||.||.
T Consensus       157 sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~  212 (324)
T cd02668         157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDR  212 (324)
T ss_pred             CHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeec
Confidence            99999999999999999999999999999999999999999999999999999973

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=100.00  E-value=1.1e-44  Score=319.46  Aligned_cols=190  Identities=29%  Similarity=0.517  Sum_probs=162.9

Q ss_pred             ccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHH---HHh
Q psy2295          54 ELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFA---LMQ  130 (276)
Q Consensus        54 ~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~---~l~  130 (276)
                      +++...+++||.|+||||||||+||+|+++|+||+.++......                   ....+++.+|.   .+.
T Consensus        17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-------------------~~~~~~q~~~~~l~~~~   77 (332)
T cd02671          17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI-------------------SSVEQLQSSFLLNPEKY   77 (332)
T ss_pred             ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc-------------------CcHHHHHHHHHHHHHHH
Confidence            56677899999999999999999999999999999997763110                   11223333332   223


Q ss_pred             cCCCcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCee
Q psy2295         131 HSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNET  205 (276)
Q Consensus       131 ~~~~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s  205 (276)
                      .+....+.|..|+..++     |..+.|||||||+..||+ .|++            ++.++|+|++.+.++|..|++.+
T Consensus        78 ~~~~~~~~P~~~~~~l~~~~~~f~~~~QQDA~EFl~~LLd-~L~~------------~i~~~F~g~~~~~~~C~~C~~~s  144 (332)
T cd02671          78 NDELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILG-NIQE------------LVEKDFQGQLVLRTRCLECETFT  144 (332)
T ss_pred             hhcccccCHHHHHHHHHHhccccCCccccCHHHHHHHHHH-HHHH------------HHHhhhceEEEEEEEeCCCCCee
Confidence            33344567999999886     778999999999999999 8873            57889999999999999999999


Q ss_pred             eeeecceeeeecc--c-------------------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCce
Q psy2295         206 DRSEIFYELVVNV--C-------------------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKV  264 (276)
Q Consensus       206 ~~~e~f~~l~l~i--~-------------------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~v  264 (276)
                      .+.|+|++|+|+|  .                   .+|+++|+.|+++|.++|+|+|.|++|+.+++|+|+..|.++|+|
T Consensus       145 ~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~v  224 (332)
T cd02671         145 ERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEV  224 (332)
T ss_pred             ceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCE
Confidence            9999999999999  2                   489999999999999999999999999999999999999999999


Q ss_pred             EEEEEeceeec
Q psy2295         265 LNLQLMRFVFD  275 (276)
Q Consensus       265 L~i~L~Rf~~d  275 (276)
                      |+|||+||.|+
T Consensus       225 L~i~LkRF~~~  235 (332)
T cd02671         225 ITIHLKCFAAN  235 (332)
T ss_pred             EEEEeeeeccc
Confidence            99999999975

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=100.00  E-value=8e-45  Score=317.75  Aligned_cols=179  Identities=31%  Similarity=0.643  Sum_probs=164.2

Q ss_pred             cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC--CcccCcH
Q psy2295          63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN--KLLVDPT  140 (276)
Q Consensus        63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~~i~p~  140 (276)
                      ||.|+||||||||+||+|++                                 ..++.+|+.||..|+.+.  ...++|.
T Consensus         1 Gl~NlGnTCY~NsvLQ~L~~---------------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~   47 (300)
T cd02663           1 GLENFGNTCYCNSVLQALYF---------------------------------ENLLTCLKDLFESISEQKKRTGVISPK   47 (300)
T ss_pred             CccCCCcceehhHHHHHhhh---------------------------------HHHHHHHHHHHHHHHhCCCCCeeECHH
Confidence            99999999999999999998                                 147889999999998864  3469999


Q ss_pred             HHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccC--------------CcchhhhhhhccceEEEEEEEeCCC
Q psy2295         141 DFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQS--------------LPHIKNFIKDYFSGEYVYVTKCFAC  201 (276)
Q Consensus       141 ~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~--------------~~~~~~~i~~~F~g~~~~~~~C~~C  201 (276)
                      .|+.+++     |..+.|||||||+..||+ .|++++....              .+...++|.++|+|++.+.++|..|
T Consensus        48 ~f~~~l~~~~~~f~~~~QqDA~EFl~~lLd-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C  126 (300)
T cd02663          48 KFITRLKRENELFDNYMHQDAHEFLNFLLN-EIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTC  126 (300)
T ss_pred             HHHHHHHhhcCCCCCCccccHHHHHHHHHH-HHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCC
Confidence            9999997     788999999999999999 9999886432              1234578999999999999999999


Q ss_pred             CCeeeeeecceeeeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         202 GNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       202 ~~~s~~~e~f~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      ++.+.+.|+|+.|+|+|  ..+|+++|+.|+++|.++|+|+|.|++|++++.|+|+..|.++|+||+|||+||.||
T Consensus       127 ~~~s~~~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~  202 (300)
T cd02663         127 ETVSSRDETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYD  202 (300)
T ss_pred             CCCccccceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEee
Confidence            99999999999999999  789999999999999999999999999999999999999999999999999999997

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=100.00  E-value=1.5e-44  Score=319.47  Aligned_cols=186  Identities=32%  Similarity=0.615  Sum_probs=168.5

Q ss_pred             cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHH-
Q psy2295          63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTD-  141 (276)
Q Consensus        63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~-  141 (276)
                      ||.|+||||||||+||+|+++|+||+++++........              ...+..+|+.+|..|..+.+.++.|.. 
T Consensus         1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~~~--------------~~~~~~~L~~lf~~l~~~~~~~~~~~~~   66 (327)
T cd02664           1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRLGD--------------SQSVMKKLQLLQAHLMHTQRRAEAPPDY   66 (327)
T ss_pred             CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccccCC--------------cchHHHHHHHHHHHHhhcCCcccCCHHH
Confidence            89999999999999999999999999999986542110              245788999999999888777888876 


Q ss_pred             HHHHhC---CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc
Q psy2295         142 FVLTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV  218 (276)
Q Consensus       142 ~~~~l~---~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i  218 (276)
                      ++....   |..+.|||||||+..||+ .|+            ++|.++|+|++.+.++|..|+.++.+.|+|..|+|+|
T Consensus        67 ~l~~~~~~~f~~~~QqDa~EFl~~lLd-~l~------------~~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i  133 (327)
T cd02664          67 FLEASRPPWFTPGSQQDCSEYLRYLLD-RLH------------TLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSF  133 (327)
T ss_pred             HHHHhcccccCCCCcCCHHHHHHHHHH-HHH------------HHHHhhCcEEeEeEEEcCCCCCEecccccceeeecCC
Confidence            666554   788999999999999999 998            3688999999999999999999999999999999998


Q ss_pred             cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295         219 CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       219 ~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                      . +|+++|+.|+++|.++|+|+|+|++|+++++|+|+..|.++|+||+|||+||.||.
T Consensus       134 ~-sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~  190 (327)
T cd02664         134 P-SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQ  190 (327)
T ss_pred             C-CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEcc
Confidence            6 89999999999999999999999999999999999999999999999999999984

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=100.00  E-value=1.4e-43  Score=313.69  Aligned_cols=202  Identities=27%  Similarity=0.425  Sum_probs=175.1

Q ss_pred             ccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhc-CCCcccCcH
Q psy2295          62 IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH-SNKLLVDPT  140 (276)
Q Consensus        62 ~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~-~~~~~i~p~  140 (276)
                      +||.|+||||||||+||+|+++|+||++++..........          .....++.++|++||..|+. .....+.|.
T Consensus         1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~----------~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~   70 (328)
T cd02660           1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLS----------CSPNSCLSCAMDEIFQEFYYSGDRSPYGPI   70 (328)
T ss_pred             CCccccCcchHHHHHHHHHhcCHHHHHHHhcCcccccccc----------CCccccHHHHHHHHHHHHhcCCCCCCcCHH
Confidence            6999999999999999999999999999998643321000          01135799999999999954 455678999


Q ss_pred             HHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCC-----cchhhhhhhccceEEEEEEEeCCCCCeeeeeec
Q psy2295         141 DFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL-----PHIKNFIKDYFSGEYVYVTKCFACGNETDRSEI  210 (276)
Q Consensus       141 ~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~-----~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~  210 (276)
                      .|+.+++     |.++.|||||||+..||+ .|+++......     ....++|.++|+|++.+.++|..|++.+.+.|+
T Consensus        71 ~~l~~~~~~~~~f~~~~QqDa~Efl~~ll~-~l~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~  149 (328)
T cd02660          71 NLLYLSWKHSRNLAGYSQQDAHEFFQFLLD-QLHTHYGGDKNEANDESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDP  149 (328)
T ss_pred             HHHHHHHhhchhhcccccccHHHHHHHHHH-HHHHHhhcccccccccccCCceeEEecccEEEeeeEcCCCCCccceecc
Confidence            9998874     778899999999999999 99998865432     223468999999999999999999999999999


Q ss_pred             ceeeeecc--c---------------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEecee
Q psy2295         211 FYELVVNV--C---------------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFV  273 (276)
Q Consensus       211 f~~l~l~i--~---------------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~  273 (276)
                      |+.|+|++  .               .+|+++|+.|+++|.+++.| |.|++|+.++.+.++..|.++|++|+|||+||.
T Consensus       150 f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~  228 (328)
T cd02660         150 FLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFE  228 (328)
T ss_pred             cceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEE
Confidence            99999999  2               89999999999999998877 999999999999999999999999999999999


Q ss_pred             ec
Q psy2295         274 FD  275 (276)
Q Consensus       274 ~d  275 (276)
                      |+
T Consensus       229 ~~  230 (328)
T cd02660         229 HS  230 (328)
T ss_pred             ec
Confidence            97

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1865|consensus

Probab=100.00  E-value=1.8e-44  Score=321.31  Aligned_cols=210  Identities=24%  Similarity=0.435  Sum_probs=186.6

Q ss_pred             ccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC
Q psy2295          54 ELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN  133 (276)
Q Consensus        54 ~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~  133 (276)
                      +.|....++||.|+|||||+|||||||.++|++.++|+...+....-            ....+++++++........+.
T Consensus       101 ~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~------------~~~~C~lc~~q~hi~~A~~~~  168 (545)
T KOG1865|consen  101 SDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH------------RAKFCMLCTFQAHITRALHNP  168 (545)
T ss_pred             ccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc------------ccCeeeehHHHHHHHHHhcCC
Confidence            34456789999999999999999999999999999999886664431            114789999999887776777


Q ss_pred             CcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhc-----cCCcchhhhhhhccceEEEEEEEeCCCCC
Q psy2295         134 KLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRV-----QSLPHIKNFIKDYFSGEYVYVTKCFACGN  203 (276)
Q Consensus       134 ~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~-----~~~~~~~~~i~~~F~g~~~~~~~C~~C~~  203 (276)
                      +.+++|..|+..|+     |..|.|+||||||.+++| .++...-.     .......++|+++|+|.+++.++|..|.+
T Consensus       169 g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd-~mqk~cL~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~  247 (545)
T KOG1865|consen  169 GHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVD-AMQKACLPGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKG  247 (545)
T ss_pred             CCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHH-HHHHhhcCCCccCCcccccceehhhhhccchhhceecccCCC
Confidence            67999999999886     899999999999999999 99988631     11224568999999999999999999999


Q ss_pred             eeeeeecceeeeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295         204 ETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       204 ~s~~~e~f~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                      ++.++|+.++|+|.|  ..+|+++|+.|.++|.++|+|+|+|++|+++++|.|+.+|.++|.||+||||||++.|
T Consensus       248 vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~~  322 (545)
T KOG1865|consen  248 VSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNGT  322 (545)
T ss_pred             cccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhccCc
Confidence            999999999999999  7999999999999999999999999999999999999999999999999999998753

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=100.00  E-value=1.2e-42  Score=304.32  Aligned_cols=202  Identities=26%  Similarity=0.450  Sum_probs=178.5

Q ss_pred             cccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcH
Q psy2295          61 FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPT  140 (276)
Q Consensus        61 ~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~  140 (276)
                      |+||.|+||||||||+||+|+++|+|+++++.........            ....++.++|+.++..|..+....+.|.
T Consensus         1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~p~   68 (304)
T cd02661           1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC------------NEGFCMMCALEAHVERALASSGPGSAPR   68 (304)
T ss_pred             CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhcc------------CCcchHHHHHHHHHHHHHhCCCCccChH
Confidence            6899999999999999999999999999998754432110            0125789999999999998888899999


Q ss_pred             HHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCC--------cchhhhhhhccceEEEEEEEeCCCCCeeee
Q psy2295         141 DFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL--------PHIKNFIKDYFSGEYVYVTKCFACGNETDR  207 (276)
Q Consensus       141 ~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~--------~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~  207 (276)
                      .|..+++     |..+.||||+||+.+||+ .|+++......        ....+++.++|+|++.+.++|..|+..+.+
T Consensus        69 ~~~~~l~~~~~~f~~~~qqDa~Efl~~ll~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~  147 (304)
T cd02661          69 IFSSNLKQISKHFRIGRQEDAHEFLRYLLD-AMQKACLDRFKKLKAVDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNT  147 (304)
T ss_pred             HHHHHHHHHHHhhcCcchhhHHHHHHHHHH-HHHHHHhhhcccccccCccccCCChhhhcCCcEEeeeEEeCCCCCCcCc
Confidence            9998875     888999999999999999 99987543221        123578999999999999999999999999


Q ss_pred             eecceeeeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         208 SEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       208 ~e~f~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      .++|+.|+|++  ..+|+++|+.++++|.++|+++|.|++|++++.+.++..|.++|++|+|||+||.|+
T Consensus       148 ~e~~~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~  217 (304)
T cd02661         148 YDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF  217 (304)
T ss_pred             cccceeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC
Confidence            99999999999  579999999999999999999999999999999999999999999999999999987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=100.00  E-value=4.9e-42  Score=301.78  Aligned_cols=194  Identities=24%  Similarity=0.348  Sum_probs=165.6

Q ss_pred             cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC---------
Q psy2295          63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN---------  133 (276)
Q Consensus        63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~---------  133 (276)
                      ||.|+||||||||+||+|+++|+||++++..........          .....++.++|++||..|+...         
T Consensus         1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~----------~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~   70 (311)
T cd02658           1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDV----------VDPANDLNCQLIKLADGLLSGRYSKPASLKS   70 (311)
T ss_pred             CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCc----------CCccccHHHHHHHHHHHhcCCCcCCCccccc
Confidence            999999999999999999999999999987432211100          0012579999999999987642         


Q ss_pred             -----CcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCC
Q psy2295         134 -----KLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGN  203 (276)
Q Consensus       134 -----~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~  203 (276)
                           ...++|..|+.+++     |..+.|||||||+.+||+ .|++++....    ...+.++|.|.+.+.++|..|+.
T Consensus        71 ~~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~-~l~~~~~~~~----~~~~~~~f~~~~~~~i~C~~C~~  145 (311)
T cd02658          71 ENDPYQVGIKPSMFKALIGKGHPEFSTMRQQDALEFLLHLID-KLDRESFKNL----GLNPNDLFKFMIEDRLECLSCKK  145 (311)
T ss_pred             cccccccccCcHHHHHHHhccChhhcccccccHHHHHHHHHH-HHHHhhcccc----cCCchhheEEEeeEEEEcCCCCC
Confidence                 34689999999986     788999999999999999 9999875321    24578999999999999999999


Q ss_pred             eeeeeecceeeeecc--c--------------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEE
Q psy2295         204 ETDRSEIFYELVVNV--C--------------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNL  267 (276)
Q Consensus       204 ~s~~~e~f~~l~l~i--~--------------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i  267 (276)
                      .+.+.++|..|+|++  .              .+|+++|+.|+.+|.++    ++|++|++++.|.|+.+|.++|+||+|
T Consensus       146 ~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii  221 (311)
T cd02658         146 VKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVI  221 (311)
T ss_pred             EEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEE
Confidence            999999999999887  2              28999999999999998    689999999999999999999999999


Q ss_pred             EEeceeec
Q psy2295         268 QLMRFVFD  275 (276)
Q Consensus       268 ~L~Rf~~d  275 (276)
                      ||+||.|+
T Consensus       222 ~LkRF~~~  229 (311)
T cd02658         222 NMKRFQLL  229 (311)
T ss_pred             EeEEEEec
Confidence            99999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=100.00  E-value=8.4e-42  Score=303.13  Aligned_cols=199  Identities=40%  Similarity=0.661  Sum_probs=173.4

Q ss_pred             CcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCc
Q psy2295          60 EFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDP  139 (276)
Q Consensus        60 ~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p  139 (276)
                      |++||.|+||||||||+||+|+++|+|+++++........             .....+.++|+.||..|+.+....+.|
T Consensus         1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~-------------~~~~~~~~~l~~lf~~~~~~~~~~~~~   67 (334)
T cd02659           1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDD-------------DDNKSVPLALQRLFLFLQLSESPVKTT   67 (334)
T ss_pred             CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccC-------------cccccHHHHHHHHHHHHHhCCccccCc
Confidence            6899999999999999999999999999999987322111             002468999999999999877666666


Q ss_pred             HHHH--HHhC---CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceee
Q psy2295         140 TDFV--LTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYEL  214 (276)
Q Consensus       140 ~~~~--~~l~---~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l  214 (276)
                      ..+.  ..+.   +..+.||||+||+..||+ .|++++...   ...+++.++|.|++...++|..|+..+...++|+.|
T Consensus        68 ~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~-~l~~~~~~~---~~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l  143 (334)
T cd02659          68 ELTDKTRSFGWDSLNTFEQHDVQEFFRVLFD-KLEEKLKGT---GQEGLIKNLFGGKLVNYIICKECPHESEREEYFLDL  143 (334)
T ss_pred             chhheeccCCCCCCCcccchhHHHHHHHHHH-HHHHHhccC---cccchhhhhCceEEEeEEEecCCCceecccccceEE
Confidence            6553  2222   678999999999999999 999988542   234689999999999999999999999999999999


Q ss_pred             eecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         215 VVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       215 ~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      +|++  ..+|+++|+.++.+|.++|+|+|.|++|++++.+.++..|.++|+||+|||+||.||
T Consensus       144 ~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~  206 (334)
T cd02659         144 QVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFD  206 (334)
T ss_pred             EEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEc
Confidence            9999  589999999999999999999999999999999999999999999999999999997

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=100.00  E-value=6.1e-41  Score=294.03  Aligned_cols=194  Identities=29%  Similarity=0.407  Sum_probs=167.1

Q ss_pred             cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHH
Q psy2295          63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDF  142 (276)
Q Consensus        63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~  142 (276)
                      ||.|+||||||||+||+|+++|+||+++++........           .....++..+|+.||..|+.+. ..++|..|
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~   68 (305)
T cd02657           1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGA-----------NQSSDNLTNALRDLFDTMDKKQ-EPVPPIEF   68 (305)
T ss_pred             CcccccchhHHHHHHHHHhCCHHHHHHHHhcccccccc-----------ccchhHHHHHHHHHHHHHHhCC-CcCCcHHH
Confidence            89999999999999999999999999999875432100           0113579999999999998876 47999999


Q ss_pred             HHHhC-----C------CCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCC-Ceeeeeec
Q psy2295         143 VLTLG-----L------DRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACG-NETDRSEI  210 (276)
Q Consensus       143 ~~~l~-----~------~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~-~~s~~~e~  210 (276)
                      +..++     |      ..++||||+||+..||+ .|++++...  ....+.|.++|+|++.+.++|..|+ .++.+.|+
T Consensus        69 ~~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld-~L~~~~~~~--~~~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~  145 (305)
T cd02657          69 LQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLS-VLSQKLPGA--GSKGSFIDQLFGIELETKMKCTESPDEEEVSTES  145 (305)
T ss_pred             HHHHHHHCcCcccccCCCCccccCHHHHHHHHHH-HHHHHhccc--CCCCcHHHHhhceEEEEEEEcCCCCCCCcccccc
Confidence            99885     3      45599999999999999 999998541  2335689999999999999999999 78999999


Q ss_pred             ceeeeecc--c---ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295         211 FYELVVNV--C---KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       211 f~~l~l~i--~---~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                      |+.|+|+|  .   .+|+++|+.+++++..     ..|+.|+....++|+..|.++|+||+|||+||.||+
T Consensus       146 f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~  211 (305)
T cd02657         146 EYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKR  211 (305)
T ss_pred             ceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCcccc
Confidence            99999999  2   5799999999987654     479999999999999999999999999999999974

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=100.00  E-value=1.2e-40  Score=288.55  Aligned_cols=157  Identities=27%  Similarity=0.500  Sum_probs=139.1

Q ss_pred             cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHH
Q psy2295          63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDF  142 (276)
Q Consensus        63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~  142 (276)
                      ||.|+||||||||+||+|+++|+||++++..                     +..+...+....                
T Consensus         1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~~---------------------P~~~~~~l~~~~----------------   43 (279)
T cd02667           1 GLSNLGNTCFFNAVMQNLSQTPALRELLSET---------------------PKELFSQVCRKA----------------   43 (279)
T ss_pred             CCcCCCCchHHHHHHHHHhcCHHHHHHHHHC---------------------HHHHHHHHHHhh----------------
Confidence            9999999999999999999999999999860                     223333332210                


Q ss_pred             HHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc----
Q psy2295         143 VLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV----  218 (276)
Q Consensus       143 ~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i----  218 (276)
                         -.|..++||||+||+..||+ .|+            +++.++|.|++.+.++|..|++.+.+.|+|+.|+|++    
T Consensus        44 ---~~f~~~~QqDA~Efl~~lld-~l~------------~~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~  107 (279)
T cd02667          44 ---PQFKGYQQQDSHELLRYLLD-GLR------------TFIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEI  107 (279)
T ss_pred             ---HhhcCCchhhHHHHHHHHHH-HHH------------HhhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCccc
Confidence               12678899999999999999 988            4688999999999999999999999999999999987    


Q ss_pred             --cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         219 --CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       219 --~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                        ..+|+++|+.|+++|.++|+|+|.|++|++   |+|+..|.++|+||+|||+||.|+
T Consensus       108 ~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~  163 (279)
T cd02667         108 KSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQP  163 (279)
T ss_pred             CCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccC
Confidence              469999999999999999999999999988   899999999999999999999997

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.5e-40  Score=273.03  Aligned_cols=212  Identities=25%  Similarity=0.402  Sum_probs=174.1

Q ss_pred             cCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCC
Q psy2295          55 LRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNK  134 (276)
Q Consensus        55 ~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~  134 (276)
                      ......|.||+|+|||||||++||||+.+..+..++...-+......+...+  .    ........+..++..|.....
T Consensus        65 ~~dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg--~----~g~~~~k~F~~l~~~~~~Hg~  138 (415)
T COG5533          65 RKDNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRG--K----PGSNAFKQFIALYETPGCHGP  138 (415)
T ss_pred             hhcccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCC--C----cchhHHHHHHHHHhccccCCC
Confidence            3345689999999999999999999999999999665543332211111100  0    011344555566666655556


Q ss_pred             cccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc-------------------------------
Q psy2295         135 LLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP-------------------------------  178 (276)
Q Consensus       135 ~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~-------------------------------  178 (276)
                      ..|+|..|+..++     |.+.+|||+|||+.++|| .||+++...+..                               
T Consensus       139 ~sis~~nF~~i~~~~n~~fs~dmQqD~qEFl~fflD-~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L  217 (415)
T COG5533         139 KSISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLD-LLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHL  217 (415)
T ss_pred             cccchHHHHHHHccccccccccchhhHHHHHHHHHH-HHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhh
Confidence            7899999999987     888899999999999999 999998653311                               


Q ss_pred             -chhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc----cccHHHHHHHhhccceecCCCccccCcCCCceeeE
Q psy2295         179 -HIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAG  253 (276)
Q Consensus       179 -~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~  253 (276)
                       ...++|.+.|.|+..++++|..|++.|+++.+|..|.+++    ...|.||++.|.++|.++|+++++|++|+++..+.
T Consensus       218 ~sn~S~v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~  297 (415)
T COG5533         218 RSNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSR  297 (415)
T ss_pred             ccchHHHHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccch
Confidence             0137899999999999999999999999999999999999    56799999999999999999999999999999999


Q ss_pred             EEEEeccCCceEEEEEecee
Q psy2295         254 RRIRLKYLPKVLNLQLMRFV  273 (276)
Q Consensus       254 k~~~i~~lP~vL~i~L~Rf~  273 (276)
                      |++.|.++|++|||||+||.
T Consensus       298 K~~~I~~lP~~LII~i~RF~  317 (415)
T COG5533         298 KRMEILVLPDVLIIHISRFH  317 (415)
T ss_pred             heEEEEecCceEEEEeeeee
Confidence            99999999999999999997

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=100.00  E-value=2e-39  Score=296.48  Aligned_cols=201  Identities=19%  Similarity=0.265  Sum_probs=160.4

Q ss_pred             CCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC--Cc
Q psy2295          58 PNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN--KL  135 (276)
Q Consensus        58 ~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~  135 (276)
                      .+|++||.|+||||||||+||+|+++|+||++++.........            ....++..+|+.+++.+|.+.  +.
T Consensus       116 ~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~------------~~~~~l~~~l~~l~~kl~~~~~~~~  183 (440)
T cd02669         116 LPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIK------------DRKSELVKRLSELIRKIWNPRNFKG  183 (440)
T ss_pred             cCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhcccccccc------------CCCcHHHHHHHHHHHHHhccccCCC
Confidence            4689999999999999999999999999999999764432110            012478999999999999765  57


Q ss_pred             ccCcHHHHHHhC------CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCC-------
Q psy2295         136 LVDPTDFVLTLG------LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACG-------  202 (276)
Q Consensus       136 ~i~p~~~~~~l~------~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~-------  202 (276)
                      .++|..|+.+++      |.++.|||||||+.+||+ .|++++.... +...++|+++|+|++++.++|..|+       
T Consensus       184 ~isP~~fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd-~L~~~l~~~~-~~~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~  261 (440)
T cd02669         184 HVSPHELLQAVSKVSKKKFSITEQSDPVEFLSWLLN-TLHKDLGGSK-KPNSSIIHDCFQGKVQIETQKIKPHAEEEGSK  261 (440)
T ss_pred             ccCHHHHHHHHHhhcccccCCcccCCHHHHHHHHHH-HHHHHhccCC-CCCCCcceeccCceEEEEEEeecccccccccc
Confidence            899999998874      678999999999999999 9999986532 2346799999999999999987554       


Q ss_pred             --------Ceeeeeecceeeeecc-cc------cHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEE
Q psy2295         203 --------NETDRSEIFYELVVNV-CK------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNL  267 (276)
Q Consensus       203 --------~~s~~~e~f~~l~l~i-~~------sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i  267 (276)
                              ..+.+.++|+.|+|+| ..      +...++..+...|.++   +|.|++|...++++|+.+|.+||+||+|
T Consensus       262 ~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~k~~~I~~LP~vLii  338 (440)
T cd02669         262 DKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSLKRYLISRLPKYLIF  338 (440)
T ss_pred             cccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccceEEEEEeeCCcEEEE
Confidence                    2456789999999999 11      1122222233333344   4888899988999999999999999999


Q ss_pred             EEeceeec
Q psy2295         268 QLMRFVFD  275 (276)
Q Consensus       268 ~L~Rf~~d  275 (276)
                      |||||.|+
T Consensus       339 hLKRF~~~  346 (440)
T cd02669         339 HIKRFSKN  346 (440)
T ss_pred             EEecccCC
Confidence            99999986

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.9e-40  Score=294.51  Aligned_cols=152  Identities=29%  Similarity=0.428  Sum_probs=129.6

Q ss_pred             CCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccC
Q psy2295          59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVD  138 (276)
Q Consensus        59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~  138 (276)
                      -|.+||+|+||||||||+||||.|++.+|+|++.-.+.+...+.+..++.       +.+..++..|..++..+...++.
T Consensus       263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmh-------g~vAsayadLik~ly~~~~haf~  335 (823)
T COG5560         263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMH-------GSVASAYADLIKQLYDGNLHAFT  335 (823)
T ss_pred             ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchh-------hhHHHHHHHHHHHHhCccccccC
Confidence            48899999999999999999999999999999987766655444333332       45777778888888888888999


Q ss_pred             cHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhcc------CCc-----------------------chhhhh
Q psy2295         139 PTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQ------SLP-----------------------HIKNFI  184 (276)
Q Consensus       139 p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~------~~~-----------------------~~~~~i  184 (276)
                      |..|+..+|     |.++.|||+|||+.+||| .||+++.+-      ..|                       ...++|
T Consensus       336 Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLD-gLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiI  414 (823)
T COG5560         336 PSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLD-GLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSII  414 (823)
T ss_pred             hHHHHHHHhhhHHHhcCccchhHHHHHHHHHH-HHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccH
Confidence            999999998     899999999999999999 999988731      111                       125899


Q ss_pred             hhccceEEEEEEEeCCCCCeeeeeecceeeeecc
Q psy2295         185 KDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV  218 (276)
Q Consensus       185 ~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i  218 (276)
                      .++|.|.++++..|+.|+.++.+++||..|+||+
T Consensus       415 tdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPL  448 (823)
T COG5560         415 TDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPL  448 (823)
T ss_pred             HHHHHHHhhceeeccCcCceeeeecchhhccccC
Confidence            9999999999999999999999999999999987

>KOG1866|consensus

Probab=100.00  E-value=5.3e-40  Score=298.31  Aligned_cols=247  Identities=30%  Similarity=0.478  Sum_probs=212.7

Q ss_pred             cccccccccCCCCccccccc--ccchhcccccCCCCCCCCCCcccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHH
Q psy2295          13 ILCIISSRNCKGNPFCLASL--GESRWFNEQKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAV   90 (276)
Q Consensus        13 ~~c~~~~~nc~~~p~c~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l   90 (276)
                      +.|..|..||+.+..|++.+  -+.+|.+... ..-....|...+|.+.+.+||+|-|+|||||+++|-+.++|.+|+.+
T Consensus        46 A~~~~cV~nlkrs~~~~~tl~l~~k~~~s~q~-lyE~~YlppVgsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~l  124 (944)
T KOG1866|consen   46 ALAIGCVYNLKRSVDCLMTLYYMFKATTSCQA-LYEWEYLPPVGSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLL  124 (944)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-ccCcccCCCcCCCCCcceeeecCCCchHHHhhhhhhhhhcccccchh
Confidence            45567888888888888775  2444443322 11224566777888999999999999999999999999999999999


Q ss_pred             hccCCCCCccccCCCCCCCCCCCC-cccHHHHHHHHHHHHhcCCCcccCcHHHHHHhC-----CCCCccccHHHHHHHHH
Q psy2295          91 LDWNPREDSEEKNNPSLGFSGFYE-PQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFL  164 (276)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~lf~~l~~~~~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll  164 (276)
                      +.........           ++. ...+++++|.+|+.+..++-+++-|..|++.++     .+..+||||-||+..|+
T Consensus       125 l~~~~~td~p-----------d~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg~Wk~Fr~~~~pln~reqhDA~eFf~sLl  193 (944)
T KOG1866|consen  125 LAFVGTTDLP-----------DMSGDEKVLRHLQVIFGHLAASQLQYYVPEGFWKQFRLWGEPLNLREQHDALEFFNSLL  193 (944)
T ss_pred             hhhcccccch-----------hhcchHHHHHHHHHHHHHHHHHhhhhhcchhHHHHhhccCCccchHhhhhHHHHHHHHH
Confidence            8876552211           111 123999999999999999999999999999998     45679999999999999


Q ss_pred             HHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc-cccHHHHHHHhhccceecCCCcccc
Q psy2295         165 SNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV-CKTLDESMREFLKEELLEGDDQYFC  243 (276)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i-~~sl~~~L~~~~~~e~l~g~n~~~C  243 (276)
                      | .+++.+++.+.|.   +++..|+|.+..+..|..|-+..+..|+|..|+|.| +.+|+++|+.|.+.|.++|+|.|+|
T Consensus       194 d-~~De~LKklg~p~---lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~~~nLeesLeqfv~gevlEG~nAYhC  269 (944)
T KOG1866|consen  194 D-SLDEALKKLGHPQ---LFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIRHQNLEESLEQFVKGEVLEGANAYHC  269 (944)
T ss_pred             H-HHHHHHHHhCCcH---HHHHHhcCccchhhhhccCCcccCccccceeeeeecccchHHHHHHHHHHHHHhcCcchhhh
Confidence            9 9999998766554   789999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             CcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         244 NRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       244 ~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      ++|++++...|++.|++||++|+||||||.||
T Consensus       270 eKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD  301 (944)
T KOG1866|consen  270 EKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYD  301 (944)
T ss_pred             hhhhhhhHhHHHHHHhhCChhheehhhhccch
Confidence            99999999999999999999999999999998

>KOG1863|consensus

Probab=100.00  E-value=6.4e-37  Score=303.65  Aligned_cols=250  Identities=32%  Similarity=0.481  Sum_probs=219.5

Q ss_pred             ccCCcccccccccCCCCcccccccccchhcccccCCCCCCC-CCCcccCCCCCcccccccCCcchhhHHHHHHhcCHHHH
Q psy2295           9 CPNLILCIISSRNCKGNPFCLASLGESRWFNEQKHDSSDDF-DPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFR   87 (276)
Q Consensus         9 ~~~~~~c~~~~~nc~~~p~c~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~   87 (276)
                      ..|-..|+.|.++|+.++.++...|...+............ .+..+.+..+-++||+|+||||||||+||+||.++.||
T Consensus       117 ~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~d~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR  196 (1093)
T KOG1863|consen  117 RDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLMNPYDSKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFR  196 (1093)
T ss_pred             cchhhccchhHhhccCcccccccccceeeeeeeeeecCCcccchhhhhhcCCCCccccCCCceeeehHHHHHHHccHHHH
Confidence            45667788999999999999999998888877666555533 34444555555699999999999999999999999999


Q ss_pred             HHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHHHHHhCCCC---CccccHHHHHHHHH
Q psy2295          88 KAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDR---SYQQDAQEFSKLFL  164 (276)
Q Consensus        88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~~~~l~~~~---~~QqDa~Efl~~ll  164 (276)
                      +.++.+++......+            ...+..+|+.||..|+.++.+++++.++...+++..   .+|||+|||...|+
T Consensus       197 ~~Vy~~~~~~~~~~~------------~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~~~~~~~~~~~~~~QqDvqEf~~~l~  264 (1093)
T KOG1863|consen  197 RAVYSIPPFTGHEDP------------RRSIPLALQRLFYELQMSKRKYVDTSELTKSLGWDSNDSFEQQDVQEFLTKLL  264 (1093)
T ss_pred             HHHhcCCCCCCcccc------------cchHHHHHHHHHHHHhhcCCCCcCchhhhhhhhcccccHHhhhhHHHHHHHHH
Confidence            999999752111111            245889999999999999999999999999999776   89999999999999


Q ss_pred             HHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc--cccHHHHHHHhhccceecCCCccc
Q psy2295         165 SNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYF  242 (276)
Q Consensus       165 ~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~  242 (276)
                      | .||+.+....   ..+.+.++|.|++.+.+.|..|+..+.+.|.|+++.+++  ..++.++|+.|+..|+++|+|+ .
T Consensus       265 d-~LE~~~~~~~---~~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~  339 (1093)
T KOG1863|consen  265 D-WLEDSMIDAK---VENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-Y  339 (1093)
T ss_pred             H-HHHhhccchh---hhhhhhhhhcCCcceEEEEEeeeeeccccccccCccccccchhhHHHHHHHhhhHHHhcCCcc-c
Confidence            9 9999986544   467899999999999999999999999999999999999  7889999999999999999999 7


Q ss_pred             cCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         243 CNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       243 C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      |+.|...+.|.+...+.+||+||.|||+||.||
T Consensus       340 ~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~  372 (1093)
T KOG1863|consen  340 DAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYD  372 (1093)
T ss_pred             cccccchhhhhcceeeccCCchhhhhhhheeee
Confidence            999999999999999999999999999999997

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=100.00  E-value=5.7e-36  Score=263.98  Aligned_cols=183  Identities=28%  Similarity=0.372  Sum_probs=150.5

Q ss_pred             cccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCcc-------ccCC-CCCCCCCCCCcccHHHHHHHHHHHHhcC
Q psy2295          61 FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSE-------EKNN-PSLGFSGFYEPQTAIGHLQMLFALMQHS  132 (276)
Q Consensus        61 ~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~l~~~l~~lf~~l~~~  132 (276)
                      |+||.|+||||||||+||+|+++|+||++++.+.......       ...+ .............++.+|+.||..|+.+
T Consensus         1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s   80 (343)
T cd02666           1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS   80 (343)
T ss_pred             CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence            7999999999999999999999999999999986332100       0000 0000000001246999999999999999


Q ss_pred             CCcccCcHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCC----------cchhhhhhhccceEEEEEEEeCCCC
Q psy2295         133 NKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSL----------PHIKNFIKDYFSGEYVYVTKCFACG  202 (276)
Q Consensus       133 ~~~~i~p~~~~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~----------~~~~~~i~~~F~g~~~~~~~C~~C~  202 (276)
                      ....++|..++..+.+   .||||+||+..||+ .|+.+++....          ....++|.++|.|++.+.++|..|+
T Consensus        81 ~~~~v~P~~~l~~l~~---~QQDa~Ef~~~lld-~Le~~lk~~~~~~~~~~~~~~~~~~~~I~~lF~G~~~~~i~c~~~~  156 (343)
T cd02666          81 NTRSVTPSKELAYLAL---RQQDVTECIDNVLF-QLEVALEPISNAFAGPDTEDDKEQSDLIKRLFSGKTKQQLVPESMG  156 (343)
T ss_pred             CCCccCcHHHHHhccc---cccchHHHHHHHHH-HHHHHhcCccccccCcccccccchhhhhhHhceeeEEEEEEecccC
Confidence            9899999999998887   89999999999999 99999875432          2346789999999999999999997


Q ss_pred             ---Ceeeeeecceeeeecc-c-----------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEE
Q psy2295         203 ---NETDRSEIFYELVVNV-C-----------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNL  267 (276)
Q Consensus       203 ---~~s~~~e~f~~l~l~i-~-----------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i  267 (276)
                         ..+.+.|+|+.|+++| .           .+|+++|+.|++.|.                       |.++|+||.|
T Consensus       157 ~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~-----------------------~~~~P~vl~~  213 (343)
T cd02666         157 NQPSVRTKTERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS-----------------------LTKLPQRSQV  213 (343)
T ss_pred             CCCCCccccceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------------------hccCCHHHHH
Confidence               6789999999999999 4           689999999998876                       8999999999


Q ss_pred             EEe
Q psy2295         268 QLM  270 (276)
Q Consensus       268 ~L~  270 (276)
                      |||
T Consensus       214 qlq  216 (343)
T cd02666         214 QAQ  216 (343)
T ss_pred             HHh
Confidence            987

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=100.00  E-value=2.1e-35  Score=250.22  Aligned_cols=133  Identities=35%  Similarity=0.611  Sum_probs=121.7

Q ss_pred             cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHH
Q psy2295          63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDF  142 (276)
Q Consensus        63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~  142 (276)
                      ||+|+||||||||+||+|+++|+||+++...                      .                          
T Consensus         1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~----------------------~--------------------------   32 (240)
T cd02662           1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEF----------------------L--------------------------   32 (240)
T ss_pred             CCcCCCCccHHHHHHHHHHCCHHHHHHHHHH----------------------H--------------------------
Confidence            9999999999999999999999999998753                      0                          


Q ss_pred             HHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeee-eeecceeeeecc--c
Q psy2295         143 VLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETD-RSEIFYELVVNV--C  219 (276)
Q Consensus       143 ~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~-~~e~f~~l~l~i--~  219 (276)
                               .|||||||+..||+ .|+.            .+.++|.|++.+.++|..|++.+. +.|+|+.|+|+|  .
T Consensus        33 ---------~QqDa~EFl~~ll~-~l~~------------~i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~   90 (240)
T cd02662          33 ---------EQQDAHELFQVLLE-TLEQ------------LLKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQ   90 (240)
T ss_pred             ---------hhcCHHHHHHHHHH-HHHH------------hccCccccEEEEEEEeCCCCCccCcceeeeeeeEeccccc
Confidence                     69999999999999 9982            467899999999999999999875 599999999999  2


Q ss_pred             -----ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295         220 -----KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       220 -----~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                           .+|+++|+.|+++|.++|   |.|++|        +..|.++|+||+|||+||.||.
T Consensus        91 ~~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~  141 (240)
T cd02662          91 SSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDG  141 (240)
T ss_pred             CCCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcC
Confidence                 489999999999999986   999999        6789999999999999999974

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-35  Score=269.35  Aligned_cols=203  Identities=33%  Similarity=0.528  Sum_probs=182.6

Q ss_pred             cccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcC
Q psy2295          53 QELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHS  132 (276)
Q Consensus        53 ~~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~  132 (276)
                      ..++..+|++||+|.|+||||||+||+||.+..||+.++..+...+..              ..++.-+||++|..|+.+
T Consensus       185 YnSKkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipTd~p~g--------------rdSValaLQr~Fynlq~~  250 (1089)
T COG5077         185 YNSKKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPRG--------------RDSVALALQRLFYNLQTG  250 (1089)
T ss_pred             cccccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCCCCCCc--------------cchHHHHHHHHHHHHhcc
Confidence            446678999999999999999999999999999999999986443321              245778999999999887


Q ss_pred             CCcccCcHHHHHHhCC---CCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeee
Q psy2295         133 NKLLVDPTDFVLTLGL---DRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSE  209 (276)
Q Consensus       133 ~~~~i~p~~~~~~l~~---~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e  209 (276)
                      . .+++.++|...++|   +..+|||.|||...|.| .||...   +.....+.++.+|-|++++-+.|-.-..+|.+.|
T Consensus       251 ~-~PvdTteltrsfgWds~dsf~QHDiqEfnrVl~D-nLEksm---rgt~VEnaln~ifVgkmksyikCvnvnyEsarve  325 (1089)
T COG5077         251 E-EPVDTTELTRSFGWDSDDSFMQHDIQEFNRVLQD-NLEKSM---RGTVVENALNGIFVGKMKSYIKCVNVNYESARVE  325 (1089)
T ss_pred             C-CCcchHHhhhhcCcccchHHHHHhHHHHHHHHHH-HHHHhh---cCChhhhHHhHHHHHHhhceeeEEEechhhhhHH
Confidence            7 78999999999996   46799999999999999 999854   4455678899999999999999999999999999


Q ss_pred             cceeeeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         210 IFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       210 ~f~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      .||.+.|++  .++|+|+++.|.+.|+++|+|+|.|++= .-++|.|..-+.++||||.+|||||.||
T Consensus       326 dfwdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~-GlqdAkKGViFeSlPpVlhlqLKRFeyD  392 (1089)
T COG5077         326 DFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKH-GLQDAKKGVIFESLPPVLHLQLKRFEYD  392 (1089)
T ss_pred             HHHHHHhcccchhhHHHHHHHhhhheeccCCcccccccc-cchhhccceeeccCchHHHHHHHHhccc
Confidence            999999999  8999999999999999999999999984 4788999999999999999999999997

>KOG0944|consensus

Probab=100.00  E-value=7.3e-34  Score=256.64  Aligned_cols=200  Identities=25%  Similarity=0.353  Sum_probs=168.5

Q ss_pred             CCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC--
Q psy2295          56 RDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN--  133 (276)
Q Consensus        56 ~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--  133 (276)
                      ..+++++||+|+||+||+|||||+|+.+|.|....+.....-.. ..         ..-...+.+++.+|...|..++  
T Consensus       302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~-~~---------~~P~ndf~cQ~~Kl~~gm~sgkys  371 (763)
T KOG0944|consen  302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNC-YP---------KDPTNDFNCQLAKLLHGMLSGKYS  371 (763)
T ss_pred             ccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeec-CC---------CCcchhHHHHHHHHHHHhhcCccc
Confidence            45789999999999999999999999999999888765111110 00         0002579999999999997642  


Q ss_pred             --------CcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCC
Q psy2295         134 --------KLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFA  200 (276)
Q Consensus       134 --------~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~  200 (276)
                              ...|+|..|+..++     |...+||||+|||.+||+ .|++....+.     ..+.++|...+..++.|..
T Consensus       372 ~p~~~~~~qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~-ki~~n~rs~~-----~nptd~frF~ve~Rv~C~~  445 (763)
T KOG0944|consen  372 KPLMDPSNQNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLE-KIRENSRSSL-----PNPTDLFRFEVEDRVSCLG  445 (763)
T ss_pred             CccCCccccCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHH-HHhhcccccC-----CCHHHHHHhhhhhhhhhhc
Confidence                    24689999999997     999999999999999999 9998764431     3567899999999999999


Q ss_pred             CCCeeeeeecceeeeecc--------cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEece
Q psy2295         201 CGNETDRSEIFYELVVNV--------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRF  272 (276)
Q Consensus       201 C~~~s~~~e~f~~l~l~i--------~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf  272 (276)
                      |+.++.++++-+.+.|+|        ..++..||+.|+.+.+.+    |+|+.||.+..|+|+.+++++|++|+||++||
T Consensus       446 c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~pq~~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf  521 (763)
T KOG0944|consen  446 CRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEPQVDD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRF  521 (763)
T ss_pred             cccccccchhheeeEeeccccccccccCCHHHHHHHhcCCcchh----hhhHhhcCccccccccccccCCceEEEEeeEE
Confidence            999998888888888887        359999999999994444    99999999999999999999999999999999


Q ss_pred             eec
Q psy2295         273 VFD  275 (276)
Q Consensus       273 ~~d  275 (276)
                      .|.
T Consensus       522 ~~~  524 (763)
T KOG0944|consen  522 TLQ  524 (763)
T ss_pred             Eec
Confidence            984

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=99.97  E-value=3.6e-32  Score=229.00  Aligned_cols=131  Identities=41%  Similarity=0.712  Sum_probs=125.3

Q ss_pred             cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHH
Q psy2295          63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDF  142 (276)
Q Consensus        63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~  142 (276)
                      ||.|.|||||+||+||+|++                                                            
T Consensus         1 gl~n~~~~cy~n~~~Q~l~~------------------------------------------------------------   20 (230)
T cd02674           1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------   20 (230)
T ss_pred             CccccCcchhhhHHHHHHHH------------------------------------------------------------
Confidence            99999999999999999998                                                            


Q ss_pred             HHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc--c-
Q psy2295         143 VLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--C-  219 (276)
Q Consensus       143 ~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i--~-  219 (276)
                               .||||+||+.+||+ .|+            +.+.++|+|++.+.++|..|+..+.+.|+|+.|+|++  . 
T Consensus        21 ---------~QqDa~Ef~~~ll~-~l~------------~~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~ip~~~   78 (230)
T cd02674          21 ---------DQQDAQEFLLFLLD-GLH------------SIIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGS   78 (230)
T ss_pred             ---------hhhhHHHHHHHHHH-HHh------------hhHHheeCCEEeCcEEcCCCcCCcceecceeEEEEeccccc
Confidence                     69999999999999 888            3688999999999999999999999999999999998  2 


Q ss_pred             -----ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         220 -----KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       220 -----~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                           .+|+++|+.++.+|.++|++.+.|++|++++.+.++..|.++|++|+|||+||.|+
T Consensus        79 ~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~  139 (230)
T cd02674          79 GDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFS  139 (230)
T ss_pred             CCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecC
Confidence                 49999999999999999999999999999999999999999999999999999997

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1868|consensus

Probab=99.97  E-value=5.3e-33  Score=258.08  Aligned_cols=211  Identities=31%  Similarity=0.505  Sum_probs=176.5

Q ss_pred             CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcC-CCc
Q psy2295          57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHS-NKL  135 (276)
Q Consensus        57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~-~~~  135 (276)
                      ...+.+||.|+|||||||++||||+.++.||..++.........        .+.......+..+...++..++.. ...
T Consensus       297 ~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~--------~~~~~~~~~l~~~~~~~l~~~~~~~~~~  368 (653)
T KOG1868|consen  297 DVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFIN--------LDLFFGAEELESACAKLLQKLWHGHGQF  368 (653)
T ss_pred             cccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcc--------cCCcccchhHHHHHHHhhhhhccCCCce
Confidence            45689999999999999999999999999997777764443322        011222346777777777766665 566


Q ss_pred             ccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc--------------------------------
Q psy2295         136 LVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP--------------------------------  178 (276)
Q Consensus       136 ~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~--------------------------------  178 (276)
                      .+.|..|+..++     |.++.|||+|||+.++++ .||+++.....+                                
T Consensus       369 s~~P~~f~~~~~~y~~~~~~~~Qqd~qEfl~~lld-~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~  447 (653)
T KOG1868|consen  369 SVLPRRFIRVLKRYSPNFSGYSQQDAQEFLIFLLD-RLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLE  447 (653)
T ss_pred             ecCcHHHHHHHhhcccccccccccchHHHHHHHHH-hhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhcc
Confidence            789999999986     677889999999999999 999998753210                                


Q ss_pred             chhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc--------cccHHHHHHHhhccceecCCCccccCcCCCce
Q psy2295         179 HIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQ  250 (276)
Q Consensus       179 ~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i--------~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~  250 (276)
                      ...+.|.++|.|++++.++|..||+.+.++++|+.++|+|        ..+|.+|+..|.+.|+++|++.|.|++|+.+.
T Consensus       448 ~~d~~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~  527 (653)
T KOG1868|consen  448 EEDSKIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKE  527 (653)
T ss_pred             ccchHHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcc
Confidence            0134489999999999999999999999999999999999        25699999999999999999999999999999


Q ss_pred             eeE--EEEEeccCCceEEEEEeceeecC
Q psy2295         251 NAG--RRIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       251 ~a~--k~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                      ...  |+..|.+||++|++||+||.+|+
T Consensus       528 ~~~~lK~~~i~~lp~iLiihL~Rf~~~~  555 (653)
T KOG1868|consen  528 SSKTLKKLTILRLPKILIIHLKRFSSDG  555 (653)
T ss_pred             cccccceeeeecCCHHHHHHHHHhccCc
Confidence            885  99999999999999999999873

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2e-30  Score=227.85  Aligned_cols=200  Identities=25%  Similarity=0.356  Sum_probs=168.1

Q ss_pred             CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC---
Q psy2295          57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN---  133 (276)
Q Consensus        57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~---  133 (276)
                      .++.++||.|+||+||+||++|.|+....+...+..........-.          +-..++.++|.+|...|....   
T Consensus       299 ~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~----------~P~~~l~CQl~kll~~mk~~p~~~  368 (749)
T COG5207         299 VPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMK----------NPLECLFCQLMKLLSKMKETPDNE  368 (749)
T ss_pred             CCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeec----------CCchhHHHHHHHHHhhccCCCCcc
Confidence            3455999999999999999999999888777666543322221100          013579999999999886544   


Q ss_pred             -CcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeee
Q psy2295         134 -KLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDR  207 (276)
Q Consensus       134 -~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~  207 (276)
                       ...++|..|...++     |...+||||+|||.+||+ .|.+.+...    ..+.|.++|...+...+.|..|+.++..
T Consensus       369 y~ngi~p~~fk~~igq~h~eFg~~~QQDA~EFLlfLL~-kirk~~~S~----~~~~It~lf~Fe~e~rlsC~~C~~v~yS  443 (749)
T COG5207         369 YVNGISPLDFKMLIGQDHPEFGKFAQQDAHEFLLFLLE-KIRKGERSY----LIPPITSLFEFEVERRLSCSGCMDVSYS  443 (749)
T ss_pred             ccCCcChhhHHHHHcCCchhhhhhhhhhHHHHHHHHHH-HHhhccchh----cCCCcchhhhhhhcceeccccccccccc
Confidence             34689999999998     889999999999999999 998765433    3446889999999999999999999999


Q ss_pred             eecceeeeecc-----cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         208 SEIFYELVVNV-----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       208 ~e~f~~l~l~i-----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      +++...+.++.     .+++.++++.|+.+.+++    |.|++|+.+..|.++.-+++||++||+|..||.+.
T Consensus       444 ye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lq  512 (749)
T COG5207         444 YESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQ  512 (749)
T ss_pred             ccceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeecc
Confidence            99999888887     688999999999999999    99999999999999999999999999999999864

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=99.96  E-value=2e-29  Score=209.62  Aligned_cols=116  Identities=26%  Similarity=0.359  Sum_probs=98.4

Q ss_pred             ccccHHHHHHHHHHHHHHHHhhccC-----CcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc--cccHHH
Q psy2295         152 YQQDAQEFSKLFLSNFVEEKFRVQS-----LPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDE  224 (276)
Q Consensus       152 ~QqDa~Efl~~ll~~~l~~~~~~~~-----~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i--~~sl~~  224 (276)
                      .||||+||+..||+ .|+++++...     .+...++|.++|.|++.+++.|  |+..+.+.|+|+.|+|+|  ..+|++
T Consensus        21 ~QQDa~Ef~~~Lld-~Le~~l~~~~~~~~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i~~~~~L~e   97 (228)
T cd02665          21 QQQDVSEFTHLLLD-WLEDAFQAAAEAISPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQVNGYGNLHE   97 (228)
T ss_pred             HHHHHHHHHHHHHH-HHHHHhccccccccccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEECCCCCHHH
Confidence            49999999999999 9999986432     1234678999999999987776  788899999999999999  799999


Q ss_pred             HHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295         225 SMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       225 ~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                      +|+.++.+|.+++++.+      ....+.++..|.++|+||+|||+||.|++
T Consensus        98 ~L~~~~~ee~l~~~~~~------~~~~~~~~~~i~~lP~vL~i~LkRF~~~~  143 (228)
T cd02665          98 CLEAAMFEGEVELLPSD------HSVKSGQERWFTELPPVLTFELSRFEFNQ  143 (228)
T ss_pred             HHHHhhhhccccccccc------chhhhhhhhhhhhCChhhEEEeEeeEEcC
Confidence            99999999999875432      23446777889999999999999999974

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=99.96  E-value=5.3e-29  Score=210.55  Aligned_cols=122  Identities=21%  Similarity=0.279  Sum_probs=102.5

Q ss_pred             CCCCccccHHHHHHHHHHHHHHHHhhccC-------CcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc--
Q psy2295         148 LDRSYQQDAQEFSKLFLSNFVEEKFRVQS-------LPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--  218 (276)
Q Consensus       148 ~~~~~QqDa~Efl~~ll~~~l~~~~~~~~-------~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i--  218 (276)
                      |.+++||||||||.+||+ .|++++....       .........+.|.|++.+.++|..|++++.+.|+|+.|+|++  
T Consensus        28 F~~~~QQDAhEFL~~LLd-~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~l~s~i~C~~C~~~s~~~e~~~~L~L~i~~  106 (245)
T cd02673          28 FDNDDQQDAHEFLLTLLE-AIDDIMQVNRTNVPPSNIEIKRLNPLEAFKYTIESSYVCIGCSFEENVSDVGNFLDVSMID  106 (245)
T ss_pred             cCCCchhhHHHHHHHHHH-HHHHHHHhhcccCCCCcccccccCHhHheeeEEEeEEEecCCCCeeeeccccceecccccc
Confidence            788889999999999999 9998764321       001111245789999999999999999999999999999999  


Q ss_pred             --cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         219 --CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       219 --~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                        ..+++++++.+.+.+.++    |.|++|+.+ .+.++.+|.++|+||+|||+||.|+
T Consensus       107 ~~~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~  160 (245)
T cd02673         107 NKLDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLR  160 (245)
T ss_pred             CCcchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeec
Confidence              356788888888877776    899999986 7889999999999999999999875

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.95  E-value=4.5e-28  Score=207.18  Aligned_cols=158  Identities=35%  Similarity=0.625  Sum_probs=126.2

Q ss_pred             cccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcC--CCcccC
Q psy2295          61 FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHS--NKLLVD  138 (276)
Q Consensus        61 ~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~--~~~~i~  138 (276)
                      |+||.|.||||||||+||+|+++|+|++++..............       ......+..+|+.+|..|+.+  ....++
T Consensus         1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~l~~l~~~~~~~~~~~~~i~   73 (269)
T PF00443_consen    1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNP-------SKKIKEFLQQLQNLFRSLWSSNSSDSSIS   73 (269)
T ss_dssp             --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSST-------TSCTCHHHHHHHHHHHHHHSSCSSSSEEH
T ss_pred             CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccc-------cccccchhhhhhhhhhhhhhhccccccee
Confidence            68999999999999999999999999999997621110000000       001246999999999999988  678899


Q ss_pred             cHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCC--------cchhhhhhhccceEEEEEEEeCCCCCee
Q psy2295         139 PTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL--------PHIKNFIKDYFSGEYVYVTKCFACGNET  205 (276)
Q Consensus       139 p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~--------~~~~~~i~~~F~g~~~~~~~C~~C~~~s  205 (276)
                      |..|..+++     |..+.||||+||+..||+ .++++......        ....+++.++|.|++...+.|..|+.. 
T Consensus        74 ~~~~~~~l~~~~~~~~~~~qqDa~E~l~~ll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~c~~c~~~-  151 (269)
T PF00443_consen   74 PSDFINALSSINPSFSNGEQQDAHEFLSFLLD-WLDEEFNSSFKRKSWKNTNSSEDSLISDLFGGQFESSIKCSSCKNS-  151 (269)
T ss_dssp             CHHHHHHHHHHCGGGGSSSTEEHHHHHHHHHH-HHHHHHTSCSSHHHHHHHHCCEESHHHHHH-EEEEEEEEETTTTCE-
T ss_pred             eccccccccccccccccccccchhhhhccccc-ccchhhcccccccccccccccccccccccccccccccccccccccc-
Confidence            999999985     678999999999999999 99998866432        234678899999999999999999887 


Q ss_pred             eeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295         206 DRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       206 ~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                                                                       ...+.++|++|+|+|+||.|+.
T Consensus       152 -------------------------------------------------~~~~~~~P~~L~i~l~R~~~~~  173 (269)
T PF00443_consen  152 -------------------------------------------------QSSISSLPPILIIQLKRFEFDQ  173 (269)
T ss_dssp             -------------------------------------------------EEEEEEBBSEEEEEEE-EEEES
T ss_pred             -------------------------------------------------ccccccccceeeeccccceecc
Confidence                                                             6788999999999999998763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>KOG1873|consensus

Probab=99.95  E-value=1.3e-28  Score=224.79  Aligned_cols=157  Identities=24%  Similarity=0.342  Sum_probs=102.8

Q ss_pred             ccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCC-----CCCCCCCCcccHHHHHHHHHHH
Q psy2295          54 ELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPS-----LGFSGFYEPQTAIGHLQMLFAL  128 (276)
Q Consensus        54 ~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~lf~~  128 (276)
                      +.+.....+||.|||||||+|||||.|..+|.+|+.|...........-.++.     ........+..+..+|.. ...
T Consensus       198 e~~~~~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~-~~e  276 (877)
T KOG1873|consen  198 EKRRGYIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALAN-LLE  276 (877)
T ss_pred             cccccccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHh-hhh
Confidence            44455678999999999999999999999999999999877665322111111     111112225677888887 456


Q ss_pred             HhcCCCcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCC
Q psy2295         129 MQHSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGN  203 (276)
Q Consensus       129 l~~~~~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~  203 (276)
                      |..+.+..++|..|...+.     |.+++||||||+|..|||....++.+..+     ..|...|+|+..+...|..|++
T Consensus       277 ~~e~~ksv~~Pr~lF~~~C~k~pqF~g~~QhDsHELLR~LLD~l~~EE~~~~k-----k~Il~~fG~~t~~l~scle~~q  351 (877)
T KOG1873|consen  277 MSETTKSVITPRTLFGQFCSKAPQFRGYDQHDSHELLRCLLDSLRSEESRRRK-----KNILSNFGGETSSLVSCLECGQ  351 (877)
T ss_pred             hhhccCCccCHHHHHHHHHHhCCcccccccccHHHHHHHHHHhhhHHHHHHHH-----HhHHHhhCccccchhhhhhccc
Confidence            6677778999999988773     99999999999999999955555543211     1233334444444444444444


Q ss_pred             eeeeeecceeeee
Q psy2295         204 ETDRSEIFYELVV  216 (276)
Q Consensus       204 ~s~~~e~f~~l~l  216 (276)
                      .+..+++|..+++
T Consensus       352 ~sKvYe~f~~~~~  364 (877)
T KOG1873|consen  352 KSKVYEPFKDLSL  364 (877)
T ss_pred             hhhcccccccCCc
Confidence            3444444444433

>KOG4598|consensus

Probab=99.95  E-value=5.7e-29  Score=225.36  Aligned_cols=176  Identities=26%  Similarity=0.495  Sum_probs=159.1

Q ss_pred             CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcc
Q psy2295          57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLL  136 (276)
Q Consensus        57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~  136 (276)
                      .+.+++||.|-.-|||+|+.+|+|+..|+|++.++..                                       ....
T Consensus        83 ~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts---------------------------------------~~~~  123 (1203)
T KOG4598|consen   83 NGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTS---------------------------------------ENDS  123 (1203)
T ss_pred             CCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCC---------------------------------------Cccc
Confidence            4578999999999999999999999999998888632                                       2344


Q ss_pred             cCcHHHHHHhCCC---CCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeeccee
Q psy2295         137 VDPTDFVLTLGLD---RSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYE  213 (276)
Q Consensus       137 i~p~~~~~~l~~~---~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~  213 (276)
                      +..+.+...++|.   .++|||.||+-..++| +||..++.   .+..+.|++++.|++..-+.|.+|+.++++.+.|.+
T Consensus       124 ~et~dlt~sfgw~s~ea~~qhdiqelcr~mfd-alehk~k~---t~~~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld  199 (1203)
T KOG4598|consen  124 LETKDLTQSFGWTSNEAYDQHDVQELCRLMFD-ALEHKWKG---TEHEKLIQDLYRGTMEDFVACLKCGRESVKTDYFLD  199 (1203)
T ss_pred             ccchhhHhhcCCCcchhhhhhhHHHHHHHHHH-HHHhhhcC---chHHHHHHHHhcchHHHHHHHHHcCccccccceeec
Confidence            5666777777765   4689999999999999 99988853   455679999999999999999999999999999999


Q ss_pred             eeecc--------cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         214 LVVNV--------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       214 l~l~i--------~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      |+|+|        ..+++++|..|..+|.++|.|+|-|++|+++++|.|...|+.+|=+|+||||||.||
T Consensus       200 ~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfd  269 (1203)
T KOG4598|consen  200 LPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFD  269 (1203)
T ss_pred             ccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeeccccc
Confidence            99999        689999999999999999999999999999999999999999999999999999998

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=99.94  E-value=2e-26  Score=201.09  Aligned_cols=194  Identities=22%  Similarity=0.380  Sum_probs=172.0

Q ss_pred             ccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHh-cCCCcccCcH
Q psy2295          62 IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQ-HSNKLLVDPT  140 (276)
Q Consensus        62 ~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~-~~~~~~i~p~  140 (276)
                      +||.|.+++||+||+||+|+++|++|+.++.+. . ..              ...++.++|..||++|. .+.+..+.++
T Consensus         1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~-~-c~--------------~e~cL~cELgfLf~ml~~~~~g~~cq~s   64 (295)
T PF13423_consen    1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL-E-CP--------------KEFCLLCELGFLFDMLDSKAKGINCQAS   64 (295)
T ss_pred             CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc-C-CC--------------ccccHHHHHHHHHHHhhhhcCCCcChHH
Confidence            599999999999999999999999999999986 2 11              13689999999999999 8888899999


Q ss_pred             HHHHHhCC-----CCCccccHHHHHHHHHHHHHHHHhhccCC----------cchhhhhhhccceEEEEEEEeCCCCCee
Q psy2295         141 DFVLTLGL-----DRSYQQDAQEFSKLFLSNFVEEKFRVQSL----------PHIKNFIKDYFSGEYVYVTKCFACGNET  205 (276)
Q Consensus       141 ~~~~~l~~-----~~~~QqDa~Efl~~ll~~~l~~~~~~~~~----------~~~~~~i~~~F~g~~~~~~~C~~C~~~s  205 (276)
                      .|+.+++.     ..+.|+|+++|+.+|++ .|+.++.....          ....+.|.++|+......++|..|+.++
T Consensus        65 Nflr~l~~~~~a~~l~~~~~iq~~~~Fll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~  143 (295)
T PF13423_consen   65 NFLRALSWIPEAAALGLQQDIQSLNRFLLE-QLSMELLTFKPDIFHTSENSSSSPESSISQLFGTSFETTIRCTSCGHES  143 (295)
T ss_pred             HHHHHHhcCHHHHhcchhHHHHHHHHHHHH-HHhHHHHhcCcccccccccccCCCcchHHHHhCcceeeeecccccCCeE
Confidence            99999983     34679999999999999 99988765443          2245789999999999999999999999


Q ss_pred             eeeecceeeeecc-----cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         206 DRSEIFYELVVNV-----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       206 ~~~e~f~~l~l~i-----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      .+.+....+.|..     ..++.+.|+.++..|....   .+|++|++.+....+..|.++|+||.|.++|+..+
T Consensus       144 ~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~  215 (295)
T PF13423_consen  144 VKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEE  215 (295)
T ss_pred             EeecceeeeeccCCCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcc
Confidence            9999888888877     5799999999999999884   89999999999999999999999999999998765

>KOG1867|consensus

Probab=99.94  E-value=1.4e-26  Score=211.37  Aligned_cols=206  Identities=26%  Similarity=0.422  Sum_probs=180.1

Q ss_pred             CCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC-Ccc
Q psy2295          58 PNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN-KLL  136 (276)
Q Consensus        58 ~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~~  136 (276)
                      ..+.+||+|+|+||+||++||.|.+.+..+...+.........           ...+.++.+++..+|..++.+. +.+
T Consensus       158 ~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~-----------~~~~~~l~~~~~~~~~~~~s~~~~~~  226 (492)
T KOG1867|consen  158 ALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPS-----------SSGSSCLVCDLDRLFQALYSGHNRTP  226 (492)
T ss_pred             eecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCC-----------CCCCcchhhhhhhhhhHhhcCCCCCC
Confidence            4578999999999999999999999999988888765552221           1113589999999999999998 889


Q ss_pred             cCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhh--------ccCCcchhhhhhhccceEEEEEEEeCCCCC
Q psy2295         137 VDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFR--------VQSLPHIKNFIKDYFSGEYVYVTKCFACGN  203 (276)
Q Consensus       137 i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~--------~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~  203 (276)
                      ++|..++..++     +.++.|||||||+..+++ .++.+.+        .+.+....++++..|.|.+...++|..|+.
T Consensus       227 ~sp~~~l~~~~k~~~~~~g~~Qqda~eF~~~~~~-~~~~~~~~~~k~~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~  305 (492)
T KOG1867|consen  227 YSPFELLNLVWKHSPNLAGYEQQDAHEFLIALLD-RLHREKDDCGKSLIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGS  305 (492)
T ss_pred             cChHHHHHHHHHhCcccccccccchHHHHHHhcc-cccccccccccccccccCCcccccccceeecceeccceeehhhcc
Confidence            99999998875     778999999999999999 9998871        122224468899999999999999999999


Q ss_pred             eeeeeecceeeeeccc------------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEec
Q psy2295         204 ETDRSEIFYELVVNVC------------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMR  271 (276)
Q Consensus       204 ~s~~~e~f~~l~l~i~------------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~R  271 (276)
                      .+..+++|++++|.|+            .++.++++.+...|....+.++.|..|+.++.++|+..+.++|.+|.+|++|
T Consensus       306 ~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkR  385 (492)
T KOG1867|consen  306 KSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKR  385 (492)
T ss_pred             eeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecc
Confidence            9999999999999993            6799999999999988888899999999999999999999999999999999


Q ss_pred             eeec
Q psy2295         272 FVFD  275 (276)
Q Consensus       272 f~~d  275 (276)
                      |.+.
T Consensus       386 fe~~  389 (492)
T KOG1867|consen  386 FEHS  389 (492)
T ss_pred             cccc
Confidence            9874

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=99.93  E-value=6.9e-26  Score=191.26  Aligned_cols=140  Identities=41%  Similarity=0.712  Sum_probs=123.0

Q ss_pred             cccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCcHHH
Q psy2295          63 GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDF  142 (276)
Q Consensus        63 GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p~~~  142 (276)
                      ||.|+||+||+||+||+|++                                                            
T Consensus         1 Gl~N~~n~Cy~ns~lq~l~~------------------------------------------------------------   20 (255)
T cd02257           1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------   20 (255)
T ss_pred             CccccCcchHHhHHHHHHHH------------------------------------------------------------
Confidence            89999999999999999999                                                            


Q ss_pred             HHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCC-----cchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeec
Q psy2295         143 VLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSL-----PHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVN  217 (276)
Q Consensus       143 ~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~-----~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~  217 (276)
                               .||||+||+..+++ .|+.++.....     ....+.+.++|.|.+...+.|..|+..+.....+..+.++
T Consensus        21 ---------~q~Da~E~l~~ll~-~l~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~   90 (255)
T cd02257          21 ---------EQQDAHEFLLFLLD-KLHEELKKSSKRTSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLP   90 (255)
T ss_pred             ---------HHHHHHHHHHHHHH-HHHHHHHhhcccccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEee
Confidence                     69999999999999 99998865322     2345789999999999999999998877666666666666


Q ss_pred             c--c----ccHHHHHHHhhccceecCCCccccCcCC--CceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         218 V--C----KTLDESMREFLKEELLEGDDQYFCNRCG--KKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       218 i--~----~sl~~~L~~~~~~e~l~g~n~~~C~~C~--~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      +  .    .+|+++|+.++.+|.+++   +.|..|+  +.+.+.++..+.++|++|+|||+||.++
T Consensus        91 ~~~~~~~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~  153 (255)
T cd02257          91 LPVKGLPQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFN  153 (255)
T ss_pred             ccCCCCCCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeec
Confidence            5  2    799999999999999986   7899998  6889999999999999999999999986

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=99.92  E-value=1.5e-24  Score=185.75  Aligned_cols=160  Identities=24%  Similarity=0.366  Sum_probs=130.8

Q ss_pred             CCCCcccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHH
Q psy2295          49 FDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFAL  128 (276)
Q Consensus        49 ~~~~~~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~  128 (276)
                      ++.+......+.++||.|.|.|||+||+||+|+++|+||+++ .+......              ...++.++|+.||..
T Consensus         3 ~~fdf~~~n~t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~-~~~~~~~~--------------~~~~l~~el~~lfs~   67 (268)
T cd02672           3 EDFDFEFYNKTNYAGLENHITNSYCNSLLQLLYFIPPFRNFT-AIILVACP--------------KESCLLCELGYLFST   67 (268)
T ss_pred             ccccccccccccccccccCCccchHHHHHHHHHhcHHHHHHH-HhhcccCC--------------cCccHHHHHHHHHHH
Confidence            455666778889999999999999999999999999999983 22222111              136899999999911


Q ss_pred             HhcCCCcccCcHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeee
Q psy2295         129 MQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRS  208 (276)
Q Consensus       129 l~~~~~~~i~p~~~~~~l~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~  208 (276)
                                                =.+-|..+|++ .+..+....            +          ..|++++.+.
T Consensus        68 --------------------------~iq~F~~fll~-~i~~~~~~~------------~----------~~C~~~s~~~   98 (268)
T cd02672          68 --------------------------LIQNFTRFLLE-TISQDQLGT------------P----------FSCGTSRNSV   98 (268)
T ss_pred             --------------------------HHHHHHHHHHH-HHHHHhccc------------C----------CCCCceeecc
Confidence                                      23668888888 777554211            1          6899999999


Q ss_pred             ecceeeeeccc-------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCc----eEEEEEeceeec
Q psy2295         209 EIFYELVVNVC-------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPK----VLNLQLMRFVFD  275 (276)
Q Consensus       209 e~f~~l~l~i~-------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~----vL~i~L~Rf~~d  275 (276)
                      ++++.|+|++.       .+|.++|+.++++|...   +++|++|++++.|+|+.+|.++|+    ||+||||||.++
T Consensus        99 ~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~---~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~  173 (268)
T cd02672          99 SLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVT---KAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGE  173 (268)
T ss_pred             ccceeeeeecCccccccCCCHHHHHHHHhhhhhcc---cccccccCcccccEEEEEeecCCCcccceEEEEEeccChh
Confidence            99999999992       59999999999998653   699999999999999999999999    999999999853

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1870|consensus

Probab=99.91  E-value=8.6e-25  Score=212.64  Aligned_cols=155  Identities=26%  Similarity=0.311  Sum_probs=126.6

Q ss_pred             CCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCc
Q psy2295          56 RDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKL  135 (276)
Q Consensus        56 ~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~  135 (276)
                      ....|.+||.|+||||||||.+|+|.+.+.++++++..............++       ...+-.....+...+|.....
T Consensus       241 ~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~-------~~~~~~~~~~l~~~~~s~~~~  313 (842)
T KOG1870|consen  241 PSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGS-------AGEVASSFADLIKQLWSGNKS  313 (842)
T ss_pred             CCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcc-------cceechhhhhHHHHhccCCcc
Confidence            3567999999999999999999999999999999998766652222211111       245666778888888888777


Q ss_pred             ccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc--------------------------chhhhh
Q psy2295         136 LVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP--------------------------HIKNFI  184 (276)
Q Consensus       136 ~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~--------------------------~~~~~i  184 (276)
                      .+.|..+...++     |.++.|||.+||+.+++| .+|+.+......                          ...+++
T Consensus       314 ~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllD-glhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i  392 (842)
T KOG1870|consen  314 AVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLD-GLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVI  392 (842)
T ss_pred             ccCchhhhhhhhhccccccCcccccchhhhhHHhh-hhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhcccee
Confidence            899999888775     889999999999999999 888887543222                          125789


Q ss_pred             hhccceEEEEEEEeCCCCCeeeeeecceeeeecc
Q psy2295         185 KDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV  218 (276)
Q Consensus       185 ~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i  218 (276)
                      .++|.|.+++...|..|+..+.++++|..|++++
T Consensus       393 ~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~  426 (842)
T KOG1870|consen  393 VDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPL  426 (842)
T ss_pred             eeeecceecccccCccCCCceEEeeccccccccC
Confidence            9999999999999999999999999999988877

>KOG1864|consensus

Probab=99.87  E-value=3.2e-22  Score=185.71  Aligned_cols=208  Identities=29%  Similarity=0.506  Sum_probs=169.4

Q ss_pred             CCCCcccccccCCcchhh--HHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC-
Q psy2295          57 DPNEFIGLKNLGATCYVN--SLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN-  133 (276)
Q Consensus        57 ~~~~~~GL~NlgntCY~N--S~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-  133 (276)
                      .....-|..|.+++|+.|  ++.+.+..+-.+++..+.+.......           ......+...+..+|....... 
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~  296 (587)
T KOG1864|consen  228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRS-----------YIIKEELLTCLLDLFSSISSRKK  296 (587)
T ss_pred             ccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccch-----------hhhhHHHHHHhhhhccchhhhcc
Confidence            456789999999999999  99999999999986555443221100           0012345555566655543332 


Q ss_pred             -CcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccC------------C-----c------------
Q psy2295         134 -KLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQS------------L-----P------------  178 (276)
Q Consensus       134 -~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~------------~-----~------------  178 (276)
                       ...+.|..+...++     |..+.|||||||+.++++ .+++......            +     .            
T Consensus       297 ~~~~i~p~~~~~~~~~~~~~f~~~~qQda~eF~~~l~~-~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~  375 (587)
T KOG1864|consen  297 LVGRISPTRFISDLIKENELFTNGMQQDAHEFLNFLLN-EISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKS  375 (587)
T ss_pred             cccccCcchhhhhhhhcCCccCchhhccHHHHhhhhcc-chhhhhhhhccCCcccccccCCCCccccccccccccccccc
Confidence             23578998888876     899999999999999999 8887654321            0     0            


Q ss_pred             chhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc----cccHHHHHHHhhccceecCCCccccCcCCCceeeEE
Q psy2295         179 HIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGR  254 (276)
Q Consensus       179 ~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k  254 (276)
                      ...++++.+|.|++..+++|..|+..+.+.+.|.++++++    ..++..+|+.|..+|.+.|+|+|.|++|...+.|++
T Consensus       376 ~~~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~  455 (587)
T KOG1864|consen  376 LRENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAER  455 (587)
T ss_pred             cchhHHHHhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHH
Confidence            1357899999999999999999999999999999999988    789999999999999999999999999999999999


Q ss_pred             EEEeccCCceEEEEEeceeecC
Q psy2295         255 RIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       255 ~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                      ++.++++|.+|+||||||+|++
T Consensus       456 ~l~~k~lp~~L~l~Lkrfk~~~  477 (587)
T KOG1864|consen  456 RLKIKKLPYVLTLHLKRFKYSE  477 (587)
T ss_pred             hccccCCcceeeeehhcccccc
Confidence            9999999999999999999974

>KOG2026|consensus

Probab=99.84  E-value=3.1e-20  Score=159.10  Aligned_cols=189  Identities=25%  Similarity=0.304  Sum_probs=150.5

Q ss_pred             CCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC--Ccc
Q psy2295          59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN--KLL  136 (276)
Q Consensus        59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~--~~~  136 (276)
                      .|.+||.|+.++=|.|+++|+|.+.+++|++++.-....+               ....++..|..+.+.+|.+.  +.-
T Consensus       132 pG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n~~d---------------~~~~lv~rl~~l~rklw~~r~fk~h  196 (442)
T KOG2026|consen  132 PGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEENYFD---------------NLTELVQRLGELIRKLWNPRNFKGH  196 (442)
T ss_pred             eeeeccchhhhHHHHHHHHHHHhccchhhhhhcccccccc---------------hhHHHHHHHHHHHHHhcChhhhccc
Confidence            5789999999999999999999999999999987533111               13578899999999999985  567


Q ss_pred             cCcHHHHHHhC------CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCC----CCCeee
Q psy2295         137 VDPTDFVLTLG------LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFA----CGNETD  206 (276)
Q Consensus       137 i~p~~~~~~l~------~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~----C~~~s~  206 (276)
                      ++|.+++.++-      |..++|-|+.||+.|||+ .|+..++..+++  .++|+..|.|+++...+=..    -.....
T Consensus       197 vSphe~lqaV~~~s~k~f~i~~q~DpveFlswlln-tlhs~l~~~k~~--~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i  273 (442)
T KOG2026|consen  197 VSPHEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLN-TLHSDLRGSKKA--SSIIHKSFQGEVRIVKEKQGEASENENKEI  273 (442)
T ss_pred             CCHHHHHHHHHHHhhhheecCCCCCHHHHHHHHHH-HHHHHhCCCCCc--hhHhhHhhcceEEeeeeccccccccccceE
Confidence            99999998873      899999999999999999 999999877643  58999999999987655322    112235


Q ss_pred             eeecceeeeecc----------------cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEe
Q psy2295         207 RSEIFYELVVNV----------------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLM  270 (276)
Q Consensus       207 ~~e~f~~l~l~i----------------~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~  270 (276)
                      ...+|+.|.|++                -..|.+.|..|-....-+    +     .....+ ++..+.++|++||+|++
T Consensus       274 ~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~-----~~~~~~-~rf~l~k~P~ylifh~~  343 (442)
T KOG2026|consen  274 SVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----V-----VTPKLA-MRFRLTKLPRYLIFHMK  343 (442)
T ss_pred             EEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----e-----cchhhh-hheeeecCCceEEEEee
Confidence            567899998877                257888888887665444    2     122334 88999999999999999


Q ss_pred             ceeec
Q psy2295         271 RFVFD  275 (276)
Q Consensus       271 Rf~~d  275 (276)
                      ||.=+
T Consensus       344 rF~kN  348 (442)
T KOG2026|consen  344 RFKKN  348 (442)
T ss_pred             ecccc
Confidence            99743

>KOG1871|consensus

Probab=99.82  E-value=2.6e-20  Score=160.09  Aligned_cols=200  Identities=23%  Similarity=0.323  Sum_probs=146.4

Q ss_pred             CCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhc-------
Q psy2295          59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQH-------  131 (276)
Q Consensus        59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~-------  131 (276)
                      -.|+|+.|-||-|||||+||+|+.+++|.+.+...+....... ..          ...++.++..+.....+       
T Consensus        26 i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~-~~----------stp~lda~~~~~~df~n~~~~k~~   94 (420)
T KOG1871|consen   26 IDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVK-EG----------STPLLDASRPASSDFNNDSDAKLP   94 (420)
T ss_pred             cCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCcee-cc----------cchhHHHHHHHHhhccccchhhhh
Confidence            7899999999999999999999999999998876542221111 00          23344444444333321       


Q ss_pred             ----------------C-----CCcccCcHHHHHHhC-------CCCCccccHHHHHHHHHHHHHHHHhhccC-------
Q psy2295         132 ----------------S-----NKLLVDPTDFVLTLG-------LDRSYQQDAQEFSKLFLSNFVEEKFRVQS-------  176 (276)
Q Consensus       132 ----------------~-----~~~~i~p~~~~~~l~-------~~~~~QqDa~Efl~~ll~~~l~~~~~~~~-------  176 (276)
                                      +     +..++-|..+...+.       ...|.|.||.||+..+|| .+++++....       
T Consensus        95 r~N~~~~~~~~~~~ses~~~d~~~dav~~d~~~~~l~t~~~~e~~~~g~qedAeefl~~~ld-~lhee~~~v~~~~~~~n  173 (420)
T KOG1871|consen   95 RKNSLRVPEHVVEKSESNKSDLQGDAVKPDPIYLDLLTMSRFESLQVGKQEDAEEFLLDNLD-FLHEESSEVPTELVPPN  173 (420)
T ss_pred             hhccCCccccccchhhhhhhcccCccccCCchhhhcccCCchhhccccccccHHHHHHHHHh-hhhHHHHhhhhhhcCCc
Confidence                            0     011222333333221       346899999999999999 9999864311       


Q ss_pred             ---------------------------------------------CcchhhhhhhccceEEEEEEEeCCCCCeeeeeecc
Q psy2295         177 ---------------------------------------------LPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIF  211 (276)
Q Consensus       177 ---------------------------------------------~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f  211 (276)
                                                                   ..-..+.|.++|+|++++...=. -.+++..-+||
T Consensus       174 ~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~-~nkeS~tlqPF  252 (420)
T KOG1871|consen  174 DEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQP-SNKESATLQPF  252 (420)
T ss_pred             ccccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceecc-ccccccccCcc
Confidence                                                         00124789999999999987733 34557889999


Q ss_pred             eeeeecc----cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         212 YELVVNV----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       212 ~~l~l~i----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      ..+.|+|    ..++.++++.+...|.+.+   |.-. -+..+.+.+++.+.++|++|++||+||.|.
T Consensus       253 ~tlqldiq~~~i~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye  316 (420)
T KOG1871|consen  253 FTLQLDIQSEKIHSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYE  316 (420)
T ss_pred             ceeeeeeeccccCCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHH
Confidence            9999999    7899999999999999996   5443 577888999999999999999999999985

>KOG1872|consensus

Probab=99.72  E-value=3.9e-18  Score=150.26  Aligned_cols=203  Identities=19%  Similarity=0.231  Sum_probs=156.8

Q ss_pred             CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcc
Q psy2295          57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLL  136 (276)
Q Consensus        57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~  136 (276)
                      ...-++||.|+|||||||+.+|+|...|+++..+..+.........         -.....+..+++.+|+.|..+  .+
T Consensus       101 ~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t---------~~~a~~i~~~mR~~f~~~~~~--~~  169 (473)
T KOG1872|consen  101 ALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDT---------WERRRRISIETRTCFRPLCEK--GA  169 (473)
T ss_pred             hccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCch---------hhhhhhHHHHHHHHHHhhhcc--CC
Confidence            3456889999999999999999999999999999877533221100         001357888999999999887  78


Q ss_pred             cCcHHHHHHhC-----C------CCCccccHHHHHHHHHHHHHHHHhhccCCc-chhhhhhhccceEEEEEEEeCCCCCe
Q psy2295         137 VDPTDFVLTLG-----L------DRSYQQDAQEFSKLFLSNFVEEKFRVQSLP-HIKNFIKDYFSGEYVYVTKCFACGNE  204 (276)
Q Consensus       137 i~p~~~~~~l~-----~------~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~-~~~~~i~~~F~g~~~~~~~C~~C~~~  204 (276)
                      +.|..+..+++     |      ..+.||||.|++..++. .++..+...... .....+...|++.+..+..|..-...
T Consensus       170 v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~-~l~~~~~~~~~~~~~~~~~d~~f~~~~~~t~~~~e~e~~  248 (473)
T KOG1872|consen  170 VAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPG-MLTEALTVATEAPCLEAEAAAGFGAEFSTTMSCSEGEDE  248 (473)
T ss_pred             cchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhh-heeccccccccccchhHHHHHhhccccccceeeccCccc
Confidence            99999998885     2      34799999999999999 998877654333 44567889999999999999887666


Q ss_pred             eee--eecceeeeecc---cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295         205 TDR--SEIFYELVVNV---CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       205 s~~--~e~f~~l~l~i---~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                      ...  .|.|..|...|   ...+...|..-+++++..     ..+.-|......|...|.+||.+|+||..||.|.+
T Consensus       249 ~~~~~~E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~  320 (473)
T KOG1872|consen  249 GGGAGRELVDQLKCIINKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKA  320 (473)
T ss_pred             ccccccccccccceEEeeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCcccceEEEEEEEecc
Confidence            433  67888888877   556667777666655432     34444555566899999999999999999999964

>cd02670 Peptidase_C19N A subfamily of Peptidase C19

Probab=99.55  E-value=9.5e-15  Score=122.76  Aligned_cols=86  Identities=17%  Similarity=0.167  Sum_probs=65.3

Q ss_pred             ccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc-----cccHHHHH
Q psy2295         152 YQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV-----CKTLDESM  226 (276)
Q Consensus       152 ~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i-----~~sl~~~L  226 (276)
                      .|||+.||+++|++ .++.-+-        +..-++|.|-....-..      +...|.++.|+++.     ..||++||
T Consensus        22 ~q~D~~e~~~~l~~-~~~~~~~--------~~~~~~~~~g~~~~~~~------~~~~e~~l~l~ip~~~~~~~~tLedcL   86 (241)
T cd02670          22 EQQDPEEFFNFITD-KLLMPLL--------EPKVDIIHGGKKDQDDD------KLVNERLLQIPVPDDDDGGGITLEQCL   86 (241)
T ss_pred             HhcCHHHHHHHHHH-HHhhhhh--------hHHHHHHhcCccccccc------cccccceEEeecccCCCCCcCCHHHHH
Confidence            59999999999999 8886431        23445665532221110      34467888888887     46999999


Q ss_pred             HHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         227 REFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       227 ~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      +.|++.|+                       |.++|+||+||||||.|+
T Consensus        87 e~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~  112 (241)
T cd02670          87 EQYFNNSV-----------------------FAKAPSCLIICLKRYGKT  112 (241)
T ss_pred             HHHhchhh-----------------------hhhCCCeEEEEEEccccC
Confidence            99999986                       899999999999999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1275|consensus

Probab=99.45  E-value=1.6e-13  Score=129.01  Aligned_cols=210  Identities=20%  Similarity=0.252  Sum_probs=151.6

Q ss_pred             ccCCCCCCCCCCcccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHH
Q psy2295          41 QKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG  120 (276)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  120 (276)
                      +....++.++.++..-..+.++||.-.+-+-|.|++||+|+.+|++|..++.+....                 ..++.+
T Consensus       479 lkysk~G~edFDF~~~NqT~yaGLe~~i~N~YcNamiQllyfl~~~r~~vl~H~C~~-----------------e~CL~C  541 (1118)
T KOG1275|consen  479 LKYSKFGTEDFDFQDYNQTTYAGLETDIPNSYCNAMIQLLYFLPPIRSIVLRHICTK-----------------EFCLLC  541 (1118)
T ss_pred             eeecccccccCCCcccccceeeccCCCCchHHHHHHHHHHHhccHHHHHHHcCccch-----------------hHHHHH
Confidence            444556677777888888999999999999999999999999999999999984332                 368999


Q ss_pred             HHHHHHHHHhcCCCcccCcHHHHHHhCCC----------CC-----------ccccHHHHHHHHHHHHHHHHhhc-----
Q psy2295         121 HLQMLFALMQHSNKLLVDPTDFVLTLGLD----------RS-----------YQQDAQEFSKLFLSNFVEEKFRV-----  174 (276)
Q Consensus       121 ~l~~lf~~l~~~~~~~i~p~~~~~~l~~~----------~~-----------~QqDa~Efl~~ll~~~l~~~~~~-----  174 (276)
                      +|..||.+|..+.+......+|+.+++-.          ..           .-|||..|.....+ ...+..+.     
T Consensus       542 ELGFLF~Ml~~S~G~~Cqa~NFlraf~t~~~a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~-~~~d~~~~~~~~~  620 (1118)
T KOG1275|consen  542 ELGFLFTMLDSSTGDPCQANNFLRAFRTNPEASALGLVLSDTQISGTVNDDVLIQDAEGFISSETS-RHLDCQDCRGLQQ  620 (1118)
T ss_pred             HHHHHHHHHhhhcCCccchhHHHHHHhhChHhhhhcccccchhhccccchHHHhhhhhhccchhhh-hhhhHHHhhhhhh
Confidence            99999999999988899999999988510          11           11344433333333 22211110     


Q ss_pred             -c------CCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeecc-cccH----------HHHHHHhhccceec
Q psy2295         175 -Q------SLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV-CKTL----------DESMREFLKEELLE  236 (276)
Q Consensus       175 -~------~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i-~~sl----------~~~L~~~~~~e~l~  236 (276)
                       .      ........+.+.|+.+.+...+|-.|+.++.+......+.+.. +.++          .+.|+.-+..+.-.
T Consensus       621 s~~~~~~~~~vn~~~~l~q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~  700 (1118)
T KOG1275|consen  621 SESVDGESFKVNYAPVLQQSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNK  700 (1118)
T ss_pred             hhcccCceeeecchhHHHHHhhhHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhccccc
Confidence             0      0011245899999999999999999999887766666666655 3333          34444333332222


Q ss_pred             CCCccccCcCCCceeeEEEEEeccCCceEEEEEec
Q psy2295         237 GDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMR  271 (276)
Q Consensus       237 g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~R  271 (276)
                         +-.|+.|++......+..+.+||++|.|...-
T Consensus       701 ---~~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~  732 (1118)
T KOG1275|consen  701 ---QAWCETCTKPEPTSQKKNVRSLPDCLSINTCL  732 (1118)
T ss_pred             ---ccccccccCCCCcccccccccCcceeeeeeec
Confidence               36899999999999999999999999997653

>KOG1864|consensus

Probab=98.06  E-value=1.6e-06  Score=81.67  Aligned_cols=114  Identities=21%  Similarity=0.229  Sum_probs=64.4

Q ss_pred             ccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCC--CcccHHHHHHHHHHHHhcCCC-cccCcH
Q psy2295          64 LKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFY--EPQTAIGHLQMLFALMQHSNK-LLVDPT  140 (276)
Q Consensus        64 L~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~lf~~l~~~~~-~~i~p~  140 (276)
                      |.|.||+||.||+||++..+|+|+-.+..............+.....+..  .......+....+........ ..++-.
T Consensus        34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  113 (587)
T KOG1864|consen   34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNESFNLSVT  113 (587)
T ss_pred             EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCccccccchHH
Confidence            99999999999999999999999999877643332221111111100000  011111222222222211111 111222


Q ss_pred             HHHHHh--------CCCCCccccHHHHHHHHHHHHHHHHhhccCCc
Q psy2295         141 DFVLTL--------GLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP  178 (276)
Q Consensus       141 ~~~~~l--------~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~  178 (276)
                      .+....        +|....|+||++++..++. .+.+.++....+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~-~~~~~~~~~~~~  158 (587)
T KOG1864|consen  114 QLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMA-MVDDVMGVSEEP  158 (587)
T ss_pred             HHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhH-HHhhhcccCccc
Confidence            222222        1778899999999999999 998887665444

>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase

Probab=96.97  E-value=0.0031  Score=52.69  Aligned_cols=74  Identities=22%  Similarity=0.440  Sum_probs=50.2

Q ss_pred             hhhhhhccceEEEEEEEeCCCCCeee-----eeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCceeeEEE
Q psy2295         181 KNFIKDYFSGEYVYVTKCFACGNETD-----RSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRR  255 (276)
Q Consensus       181 ~~~i~~~F~g~~~~~~~C~~C~~~s~-----~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~  255 (276)
                      ...+.++|.-.+.-...|..||+...     .-.+|..+.-+- .             -+....--.|.+|+.+. ..|+
T Consensus       120 d~~~E~lF~~sf~WeFeC~~Cg~~~~~R~~K~L~TFtnv~pdw-h-------------PLnA~h~~pCn~C~~ks-Q~rk  184 (275)
T PF15499_consen  120 DPWIEKLFLYSFSWEFECSQCGHKYQNRCTKTLVTFTNVIPDW-H-------------PLNAVHFGPCNSCNSKS-QRRK  184 (275)
T ss_pred             chHHHhHhheeeEEEEEccccCChhhhhheeeecccCCCCCCC-C-------------cccccccCCCcccCChH-HhHh
Confidence            46789999999999999999998742     222333321111 1             11111124699998764 4778


Q ss_pred             EEeccCCceEEEEE
Q psy2295         256 IRLKYLPKVLNLQL  269 (276)
Q Consensus       256 ~~i~~lP~vL~i~L  269 (276)
                      +.+.++|+|+++|+
T Consensus       185 Mvlekv~~vfmLHF  198 (275)
T PF15499_consen  185 MVLEKVPPVFMLHF  198 (275)
T ss_pred             hhhhcCchhhhhhh
Confidence            99999999999986

>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.82  E-value=0.013  Score=46.47  Aligned_cols=24  Identities=46%  Similarity=0.731  Sum_probs=16.3

Q ss_pred             CCcccccccCCcchhhHHHHHHhc
Q psy2295          59 NEFIGLKNLGATCYVNSLLQLWFH   82 (276)
Q Consensus        59 ~~~~GL~NlgntCY~NS~LQ~L~~   82 (276)
                      -.++|+.|.+|+||+||++|.+..
T Consensus        31 ~eft~~PN~~dnCWlNaL~QL~~~   54 (193)
T PF05408_consen   31 MEFTGLPNNHDNCWLNALLQLFRY   54 (193)
T ss_dssp             -EEE----SSSTHHHHHHHHHHHH
T ss_pred             eEEecCCCCCCChHHHHHHHHHHH
Confidence            346699999999999999998743

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.

>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein

Probab=91.64  E-value=0.66  Score=40.85  Aligned_cols=71  Identities=23%  Similarity=0.228  Sum_probs=37.6

Q ss_pred             CCcccccccCCcchhhHHHHHHhcCHH-HHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCccc
Q psy2295          59 NEFIGLKNLGATCYVNSLLQLWFHNLP-FRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLV  137 (276)
Q Consensus        59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~-f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i  137 (276)
                      .+.+=|+=..|+||+||++=.|-+... |+                            .   ..++.++..+..     -
T Consensus       100 ~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~----------------------------~---~~l~~aw~~f~~-----G  143 (320)
T PF08715_consen  100 NGFRVLKQSDNNCWVNAACLQLQALKIKFK----------------------------S---PGLDEAWNEFKA-----G  143 (320)
T ss_dssp             TTEEEE---TTTHHHHHHHHHHTTST--BS----------------------------S---HHHHHHHHHHHT-----T
T ss_pred             CCEEEEEecCCCcHHHHHHHHHHhcCCccC----------------------------C---HHHHHHHHHHhC-----C
Confidence            455556777899999999766544321 21                            1   123444444422     3


Q ss_pred             CcHHHHHHh----CCCCCccccHHHHHHHHHH
Q psy2295         138 DPTDFVLTL----GLDRSYQQDAQEFSKLFLS  165 (276)
Q Consensus       138 ~p~~~~~~l----~~~~~~QqDa~Efl~~ll~  165 (276)
                      +|.+|...+    +...|+-.||+++|..|++
T Consensus       144 ~~~~fVa~~Ya~~~~~~G~~gDa~~~L~~ll~  175 (320)
T PF08715_consen  144 DPAPFVAWCYASTNAKKGDPGDAEYVLSKLLK  175 (320)
T ss_dssp             --HHHHHHHHHHTT--TTS---HHHHHHHHHT
T ss_pred             ChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH
Confidence            455555433    4778888999999999998

The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.

>PF14353 CpXC: CpXC protein

Probab=90.09  E-value=0.57  Score=35.41  Aligned_cols=49  Identities=27%  Similarity=0.573  Sum_probs=28.3

Q ss_pred             EEEeCCCCCeeeeeecceeeeecccccHHHHHHHhhccceecCCCccccCcCCCcee
Q psy2295         195 VTKCFACGNETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQN  251 (276)
Q Consensus       195 ~~~C~~C~~~s~~~e~f~~l~l~i~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~  251 (276)
                      +++|+.|++.... +.+..+.......+.+.|   +..+...    +.|++||....
T Consensus         1 ~itCP~C~~~~~~-~v~~~I~~~~~p~l~e~i---l~g~l~~----~~CP~Cg~~~~   49 (128)
T PF14353_consen    1 EITCPHCGHEFEF-EVWTSINADEDPELKEKI---LDGSLFS----FTCPSCGHKFR   49 (128)
T ss_pred             CcCCCCCCCeeEE-EEEeEEcCcCCHHHHHHH---HcCCcCE----EECCCCCCcee
Confidence            3689999986532 233333333233343333   4444444    99999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
2f1z_A	522	Crystal Structure Of Hausp Length = 522		9e-20
1nbf_A	353	Crystal Structure Of A Ubp-Family Deubiquitinating		9e-20
1nb8_A	353	Structure Of The Catalytic Domain Of Usp7 (Hausp) L		2e-18
3n3k_A	396	The Catalytic Domain Of Usp8 In Complex With A Usp8		5e-13
2gfo_A	396	Structure Of The Catalytic Domain Of Human Ubiquiti		7e-13
2y5b_A	370	Structure Of Usp21 In Complex With Linear Diubiquit		2e-11
3mtn_A	373	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		2e-11
3i3t_A	355	Crystal Structure Of Covalent Ubiquitin-usp21 Compl		3e-11
3mhh_A	476	Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE		1e-08
3m99_A	471	Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod		1e-08
4fip_A	476	Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-		3e-08
2hd5_A	359	Usp2 In Complex With Ubiquitin Length = 359		6e-08
3v6c_A	367	Crystal Structure Of Usp2 In Complex With Mutated U		6e-08
2ibi_A	374	Covalent Ubiquitin-Usp2 Complex Length = 374		2e-07
3nhe_A	348	High Resolution Structure (1.26a) Of Usp2a In Compl		9e-07
2y6e_A	367	Ubiquitin Specific Protease 4 Is Inhibited By Its U		8e-06
1vjv_A	415	Crystal Structure Of Ubiquitin Carboxyl-terminal Hy		1e-04

>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 108/220 (49%), Gaps = 25/220 (11%)
Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
           ++GLKN GATCY+NSLLQ  F     RKAV       D   K+ P               
Sbjct: 175 YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLA------------- 221
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL 177
            LQ +F  +QHS+K  V       + G   LD   Q D QE  ++ L N VE K +    
Sbjct: 222 -LQRVFYELQHSDK-PVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDN-VENKMKGTC- 277
Query: 178 PHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELL 235
             ++  I   F G+ V   +C      +DR E +Y++ +++   K + ES  +++  E L
Sbjct: 278 --VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQL 335
Query: 236 EGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
           +GD++Y     G  Q A + ++   LP VL+LQLMRF++D
Sbjct: 336 DGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYD 374

>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 108/220 (49%), Gaps = 25/220 (11%)
Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
           ++GLKN GATCY+NSLLQ  F     RKAV       D   K+ P               
Sbjct: 6   YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLA------------- 52
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL 177
            LQ +F  +QHS+K  V       + G   LD   Q D QE  ++ L N VE K +    
Sbjct: 53  -LQRVFYELQHSDK-PVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDN-VENKMKGTC- 108
Query: 178 PHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELL 235
             ++  I   F G+ V   +C      +DR E +Y++ +++   K + ES  +++  E L
Sbjct: 109 --VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQL 166
Query: 236 EGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
           +GD++Y     G  Q A + ++   LP VL+LQLMRF++D
Sbjct: 167 DGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYD 205

>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 105/220 (47%), Gaps = 25/220 (11%)
Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
           ++GLKN GATCY NSLLQ  F     RKAV       D   K+ P               
Sbjct: 6   YVGLKNQGATCYXNSLLQTLFFTNQLRKAVYXXPTEGDDSSKSVPLA------------- 52
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL 177
            LQ +F  +QHS+K  V       + G   LD   Q D QE  ++ L N VE K +    
Sbjct: 53  -LQRVFYELQHSDK-PVGTKKLTKSFGWETLDSFXQHDVQELCRVLLDN-VENKXKGTC- 108
Query: 178 PHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFLKEELL 235
             ++  I   F G+ V   +C      +DR E +Y++ +++   K + ES  +++  E L
Sbjct: 109 --VEGTIPKLFRGKXVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQL 166
Query: 236 EGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
           +GD++Y     G  Q A + ++   LP VL+LQL RF +D
Sbjct: 167 DGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLXRFXYD 205

>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 111/250 (44%), Gaps = 43/250 (17%)
Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
             GL+NLG TCY+NS+LQ    N P      + N  +D   ++N  LG  G    +  I 
Sbjct: 62  LTGLRNLGNTCYMNSILQC-LCNAPHLADYFNRNCYQDDINRSN-LLGHKGEVAEEFGI- 118
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEE----- 170
               +   +       + P DF +T+G          QQD+QE   LFL + + E     
Sbjct: 119 ----IMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELL-LFLMDGLHEDLNKA 173
Query: 171 ----KFRVQSLPHIKNF-----------------IKDYFSGEYVYVTKCFACGNETDRSE 209
               +++ ++  H+ +F                 I   F G++    +C  C  ++   E
Sbjct: 174 DNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFE 233
Query: 210 IFYELVVNVCKT----LDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVL 265
            F  L + +  T    L + +R F KEE L  +++++C+ C  ++++ ++I +  LP VL
Sbjct: 234 AFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVL 293
Query: 266 NLQLMRFVFD 275
            + L RF +D
Sbjct: 294 LVHLKRFSYD 303

>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 43/250 (17%)
Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
             GL+NLG TCY NS+LQ    N P      + N  +D   ++N  LG  G  E     G
Sbjct: 62  LTGLRNLGNTCYXNSILQC-LCNAPHLADYFNRNCYQDDINRSN-LLGHKG--EVAEEFG 117
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEE----- 170
            +       Q+     + P DF +T+G          QQD+QE   LFL + + E     
Sbjct: 118 IIXKALWTGQYR---YISPKDFKITIGKINDQFAGYSQQDSQELL-LFLXDGLHEDLNKA 173
Query: 171 ----KFRVQSLPHIKNF-----------------IKDYFSGEYVYVTKCFACGNETDRSE 209
               +++ ++  H+ +F                 I   F G++    +C  C  ++   E
Sbjct: 174 DNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFE 233
Query: 210 IFYELVVNVCKT----LDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVL 265
            F  L + +  T    L + +R F KEE L  +++++C+ C  ++++ ++I +  LP VL
Sbjct: 234 AFXYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVL 293
Query: 266 NLQLMRFVFD 275
            + L RF +D
Sbjct: 294 LVHLKRFSYD 303

>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 107/284 (37%), Gaps = 62/284 (21%)
Query: 46  SDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNP 105
           SDD      L   +  +GL+NLG TC++N++LQ      P R   L  + R++       
Sbjct: 1   SDDKMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRA 60
Query: 106 SLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTL-----GLDRSYQQDAQEFS 160
                 F +   A+ H     A         V+PT F               QQDAQEF 
Sbjct: 61  QELTEAFADVIGALWHPDSCEA---------VNPTRFRAVFQKYVPSFSGYSQQDAQEFL 111
Query: 161 KLFLSNF-VEEKFRVQSLPHI--------------------------------------- 180
           KL +    +E   R +  P I                                       
Sbjct: 112 KLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERE 171
Query: 181 KNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVCK--------TLDESMREFLKE 232
            + I D F G+     KC ACG  +   E+F +L + + K        +L +    F KE
Sbjct: 172 DSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKE 231
Query: 233 ELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           E LE ++   C+RC +K  + +++ ++  P++L L L RF   R
Sbjct: 232 EELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASR 275

>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 105/274 (38%), Gaps = 62/274 (22%)
Query: 56  RDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEP 115
           R  +  +GL+NLG TC++N++LQ      P R   L  + R++            G    
Sbjct: 17  RGSSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVP---------GGGRAQ 67
Query: 116 QTAIGHLQMLFALMQHSNKLLVDPTDFVLTL-----GLDRSYQQDAQEFSKLFLSNF-VE 169
           +       ++ AL    +   V+PT F               QQDAQEF KL +    +E
Sbjct: 68  ELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLE 127
Query: 170 EKFRVQSLPHI---------------------------------------KNFIKDYFSG 190
              R +  P I                                        + I D F G
Sbjct: 128 INRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVG 187
Query: 191 EYVYVTKCFACGNETDRSEIFYELVVNVCK--------TLDESMREFLKEELLEGDDQYF 242
           +     KC ACG  +   E+F +L + + K        +L +    F KEE LE ++   
Sbjct: 188 QLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPV 247
Query: 243 CNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           C+RC +K  + +++ ++  P++L L L RF   R
Sbjct: 248 CDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASR 281

>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 103/268 (38%), Gaps = 62/268 (23%)
Query: 62  IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGH 121
           +GL+NLG TC++N++LQ      P R   L  + R++            G    +     
Sbjct: 4   VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVP---------GGGRAQELTEAF 54
Query: 122 LQMLFALMQHSNKLLVDPTDFVLTL-----GLDRSYQQDAQEFSKLFLSNF-VEEKFRVQ 175
             ++ AL    +   V+PT F               QQDAQEF KL +    +E   R +
Sbjct: 55  ADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGR 114
Query: 176 SLPHI---------------------------------------KNFIKDYFSGEYVYVT 196
             P I                                        + I D F G+     
Sbjct: 115 RAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCL 174
Query: 197 KCFACGNETDRSEIFYELVVNVCK--------TLDESMREFLKEELLEGDDQYFCNRCGK 248
           KC ACG  +   E+F +L + + K        +L +    F KEE LE ++   C+RC +
Sbjct: 175 KCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQ 234
Query: 249 KQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           K  + +++ ++  P++L L L RF   R
Sbjct: 235 KTRSTKKLTVQRFPRILVLHLNRFSASR 262

>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 104/244 (42%), Gaps = 28/244 (11%)
Query: 51  PDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFS 110
           P  E RD     GL N+G+TC+++S+LQ   HN  F +  +      + + ++ P   FS
Sbjct: 133 PSMERRDG--LSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRS-PDKCFS 189
Query: 111 GFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTL--------GLDRSYQQDAQEFSKL 162
              +      +  +       S+      T F+  L         L    QQDA EF + 
Sbjct: 190 CALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQ- 248
Query: 163 FLSNFVEEKFRVQSLPHIKN-----------FIKDYFSGEYVYVTKCFACGNETDRS-EI 210
           F+ N + + + V  LP+ K             +   F G       C  C N +  + + 
Sbjct: 249 FIINQIHQSY-VLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDP 307
Query: 211 FYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQ 268
           F +L +++   K L E +  F K+E L+ D  Y C  C   Q+A +++ +  LP VL LQ
Sbjct: 308 FLDLSLDIKDKKKLYECLDSFHKKEQLK-DFNYHCGECNSTQDAIKQLGIHKLPSVLVLQ 366
Query: 269 LMRF 272
           L RF
Sbjct: 367 LKRF 370

>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 104/244 (42%), Gaps = 28/244 (11%)
Query: 51  PDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFS 110
           P  E RD     GL N+G+TC+++S+LQ   HN  F +  +      + + ++ P   FS
Sbjct: 128 PSMERRDG--LSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRS-PDKCFS 184
Query: 111 GFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTL--------GLDRSYQQDAQEFSKL 162
              +      +  +       S+      T F+  L         L    QQDA EF + 
Sbjct: 185 CALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQ- 243
Query: 163 FLSNFVEEKFRVQSLPHIKN-----------FIKDYFSGEYVYVTKCFACGNETDRS-EI 210
           F+ N + + + V  LP+ K             +   F G       C  C N +  + + 
Sbjct: 244 FIINQIHQSY-VLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDP 302
Query: 211 FYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQ 268
           F +L +++   K L E +  F K+E L+ D  Y C  C   Q+A +++ +  LP VL LQ
Sbjct: 303 FLDLSLDIKDKKKLYECLDSFHKKEQLK-DFNYHCGECNSTQDAIKQLGIHKLPSVLVLQ 361
Query: 269 LMRF 272
           L RF
Sbjct: 362 LKRF 365

>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 103/244 (42%), Gaps = 28/244 (11%)
Query: 51  PDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFS 110
           P  E RD     GL N+G TC+++S+LQ   HN  F +  +      + + ++ P   FS
Sbjct: 133 PSMERRDG--LSGLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRS-PDKCFS 189
Query: 111 GFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTL--------GLDRSYQQDAQEFSKL 162
              +      +  +       S+      T F+  L         L    QQDA EF + 
Sbjct: 190 CALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQ- 248
Query: 163 FLSNFVEEKFRVQSLPHIKN-----------FIKDYFSGEYVYVTKCFACGNETDRS-EI 210
           F+ N + + + V  LP+ K             +   F G       C  C N +  + + 
Sbjct: 249 FIINQIHQSY-VLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDP 307
Query: 211 FYELVVNVC--KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQ 268
           F +L +++   K L E +  F K+E L+ D  Y C  C   Q+A +++ +  LP VL LQ
Sbjct: 308 FLDLSLDIKDKKKLYECLDSFHKKEQLK-DFNYHCGECNSTQDAIKQLGIHKLPSVLVLQ 366
Query: 269 LMRF 272
           L RF
Sbjct: 367 LKRF 370

>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 105/255 (41%), Gaps = 50/255 (19%)
Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
             GL+NLG TC++NS+LQ   +    R   L      D    +N        +       
Sbjct: 9   LAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFA------ 62
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTL--------GLDRSYQQDAQEFSKLFLSNFVEEKF 172
             +++  +   S   +V P++F   +        G +   QQDAQEF +  L     E  
Sbjct: 63  --KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYN---QQDAQEFLRFLLDGLHNEVN 117
Query: 173 RV--------QSLPHIKN-----------------FIKDYFSGEYVYVTKCFACGNETDR 207
           RV        ++L H+ +                  I D F G+      C  CG  +  
Sbjct: 118 RVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTV 177
Query: 208 SEIFYELVVNVCK------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYL 261
            + F++L + + K      TL + MR F KE++L+GD++  C RC  ++   ++  ++  
Sbjct: 178 FDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRF 237
Query: 262 PKVLNLQLMRFVFDR 276
           PK+L L L RF   R
Sbjct: 238 PKILVLHLKRFSESR 252

>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 105/255 (41%), Gaps = 50/255 (19%)
Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
             GL+NLG TC++NS+LQ   +    R   L      D    +N        +       
Sbjct: 28  LAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFA------ 81
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTL--------GLDRSYQQDAQEFSKLFLSNFVEEKF 172
             +++  +   S   +V P++F   +        G +   QQDAQEF +  L     E  
Sbjct: 82  --KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYN---QQDAQEFLRFLLDGLHNEVN 136
Query: 173 RV--------QSLPHIKN-----------------FIKDYFSGEYVYVTKCFACGNETDR 207
           RV        ++L H+ +                  I D F G+      C  CG  +  
Sbjct: 137 RVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTV 196
Query: 208 SEIFYELVVNVCK------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYL 261
            + F++L + + K      TL + MR F KE++L+GD++  C RC  ++   ++  ++  
Sbjct: 197 FDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRF 256
Query: 262 PKVLNLQLMRFVFDR 276
           PK+L L L RF   R
Sbjct: 257 PKILVLHLKRFSESR 271

>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 50/255 (19%)
Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
             GL+NLG TC++NS+LQ   +    R   L      D    +N        +       
Sbjct: 35  LAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFA------ 88
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTL--------GLDRSYQQDAQEFSKLFLSNFVEEKF 172
             +++  +   S   +V P++F   +        G +   QQDAQEF +  L     E  
Sbjct: 89  --KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYN---QQDAQEFLRFLLDGLHNEVN 143
Query: 173 RV--------QSLPHIKN-----------------FIKDYFSGEYVYVTKCFACGNETDR 207
           RV        ++L H+ +                  I D F G+      C  CG  +  
Sbjct: 144 RVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTV 203
Query: 208 SEIFYELVVNVCK------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYL 261
            + F++L + + K      TL + MR F KE++L+GD    C RC  ++   ++  ++  
Sbjct: 204 FDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDAAPTCCRCRGRKRCIKKFSIQRF 263
Query: 262 PKVLNLQLMRFVFDR 276
           PK+L L L RF   R
Sbjct: 264 PKILVLHLKRFSESR 278

>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 50/255 (19%)
Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
             GL+NLG T ++NS+LQ   +    R   L      D    +N        +       
Sbjct: 9   LAGLRNLGNTXFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFA------ 62
Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTL--------GLDRSYQQDAQEFSKLFLSNFVEEKF 172
             +++  +   S   +V P++F   +        G +   QQDAQEF +  L     E  
Sbjct: 63  --KLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYN---QQDAQEFLRFLLDGLHNEVN 117
Query: 173 RV--------QSLPHIKN-----------------FIKDYFSGEYVYVTKCFACGNETDR 207
           RV        ++L H+ +                  I D F G+      C  CG  +  
Sbjct: 118 RVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTV 177
Query: 208 SEIFYELVVNVCK------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYL 261
            + F++L + + K      TL + MR F KE++L+GD++  C RC  ++   ++  ++  
Sbjct: 178 FDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRF 237
Query: 262 PKVLNLQLMRFVFDR 276
           PK+L L L RF   R
Sbjct: 238 PKILVLHLKRFSESR 252

>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 93/265 (35%), Gaps = 58/265 (21%)
Query: 63  GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
           GL NLG T ++NS LQ   +  P     L  +  E    ++NP LG  G    + A  + 
Sbjct: 10  GLGNLGNTXFMNSALQCLSNTAPLTDYFLK-DEYEAEINRDNP-LGMKG----EIAEAYA 63
Query: 123 QMLFALMQHSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL 177
           + L   M       V P  F   +G          QQD+QE     L    E+  RV+  
Sbjct: 64  E-LIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKK 122
Query: 178 PHIK-------------------------NFIKDYFSGEYVYVTKCFACGNETDRSEIFY 212
           P+++                         + I D F G +     C  C   +   + F 
Sbjct: 123 PYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFC 182
Query: 213 ELVVNVCKTLDESMRE---------------------FLKEELLEGDDQYFCNRCGKKQN 251
            L + +    D  M                       F   E L   D ++C  C K Q 
Sbjct: 183 YLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQ 242
Query: 252 AGRRIRLKYLPKVLNLQLMRFVFDR 276
           A ++  L  LPK+L + L RF ++R
Sbjct: 243 ATKKFDLWSLPKILVVHLKRFSYNR 267

>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 107/257 (41%), Gaps = 63/257 (24%)
Query: 51  PDQELRDPNEF-IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGF 109
           P+Q+++   +  +G KN G TCY+N+ LQ  +     R  +L++          NPS G 
Sbjct: 13  PEQQVQQFAQLPVGFKNXGNTCYLNATLQALYRVNDLRDXILNY----------NPSQGV 62
Query: 110 SGFYEPQTAIGHLQML------FALMQHSNKLLVDPTDFVLTLGLDRSY----------- 152
           S        I H Q++      F  +Q+ +   V P   VL   L + Y           
Sbjct: 63  SNSGAQDEEI-HKQIVIEXKRCFENLQNKSFKSVLPV--VLLNTLRKCYPQFAERDSQGG 119
Query: 153 ---QQDAQE-FSKLFLSNFV------EEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACG 202
              QQDA+E F++LF S  +       E FR+Q     K  IKD  +   + V +     
Sbjct: 120 FYKQQDAEELFTQLFHSXSIVFGDKFSEDFRIQ----FKTTIKDTANDNDITVKE----- 170
Query: 203 NETDRSEIFYELVVNVCKTLDESMREFLKEELLEGDDQYFCNR---CGKKQNAGRRIRLK 259
           NE+D      +L  ++  T +     F +  LLEG ++    R    G         ++ 
Sbjct: 171 NESDS-----KLQCHISGTTN-----FXRNGLLEGLNEKIEKRSDLTGANSIYSVEKKIS 220
Query: 260 YLPKVLNLQLMRFVFDR 276
            LPK L +Q +RF + R
Sbjct: 221 RLPKFLTVQYVRFFWKR 237

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	1e-56
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	5e-55
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	1e-37
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	1e-34
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	3e-34
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	3e-31
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	1e-30
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	6e-30
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	8e-27
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	6e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score =  184 bits (468), Expect = 1e-56
 Identities = 73/225 (32%), Positives = 109/225 (48%), Gaps = 25/225 (11%)

Query: 56  RDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEP 115
           +    ++GLKN GATCY+NSLLQ  F     RKAV       D   K+ P          
Sbjct: 1   KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPL--------- 51

Query: 116 QTAIGHLQMLFALMQHSNKLLVDPTDFVLTLG---LDRSYQQDAQEFSKLFLSNFVEEKF 172
                 LQ +F  +QHS+K  V       + G   LD   Q D QE  ++ L N VE K 
Sbjct: 52  -----ALQRVFYELQHSDK-PVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDN-VENKM 104

Query: 173 RVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKTLDESMREFL 230
           +   +   +  I   F G+ V   +C      +DR E +Y++ +++   K + ES  +++
Sbjct: 105 KGTCV---EGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYV 161

Query: 231 KEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
             E L+GD++Y     G  Q A + ++   LP VL+LQLMRF++D
Sbjct: 162 AVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYD 205

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score =  184 bits (468), Expect = 5e-55
 Identities = 72/234 (30%), Positives = 110/234 (47%), Gaps = 25/234 (10%)

Query: 47  DDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPS 106
                  + +    ++GLKN GATCY+NSLLQ  F     RKAV       D   K+ P 
Sbjct: 161 APHGVAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPL 220

Query: 107 LGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLG---LDRSYQQDAQEFSKLF 163
                          LQ +F  +QHS+K  V       + G   LD   Q D QE  ++ 
Sbjct: 221 --------------ALQRVFYELQHSDK-PVGTKKLTKSFGWETLDSFMQHDVQELCRVL 265

Query: 164 LSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNV--CKT 221
           L + VE K +   +   +  I   F G+ V   +C      +DR E +Y++ +++   K 
Sbjct: 266 L-DNVENKMKGTCV---EGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKN 321

Query: 222 LDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
           + ES  +++  E L+GD++Y     G  Q A + ++   LP VL+LQLMRF++D
Sbjct: 322 IFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYD 374

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415

 Score =  136 bits (342), Expect = 1e-37
 Identities = 49/247 (19%), Positives = 92/247 (37%), Gaps = 37/247 (14%)

Query: 48  DFDPDQELRDPNE-FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPS 106
              P+Q+++   +  +G KN+G TCY+N+ LQ  +     R  +L++NP +         
Sbjct: 10  HHHPEQQVQQFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQD 69

Query: 107 LGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLG------------LDRSYQQ 154
                    +  +  ++  F  +Q+ +   V P   + TL                  QQ
Sbjct: 70  EE-----IHKQIVIEMKRCFENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQ 124

Query: 155 DAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNE--TDRSEIFY 212
           DA+E       +               +   + F  ++    K  A  N+     +E   
Sbjct: 125 DAEELFTQLFHSMSIV---------FGDKFSEDFRIQFKTTIKDTANDNDITVKENESDS 175

Query: 213 ELVVNVCKTLDESMREFLKEELLEGDDQYFCNRC---GKKQNAGRRIRLKYLPKVLNLQL 269
           +L  ++  T +     F++  LLEG ++    R    G         ++  LPK L +Q 
Sbjct: 176 KLQCHISGTTN-----FMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQY 230

Query: 270 MRFVFDR 276
           +RF + R
Sbjct: 231 VRFFWKR 237

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score =  129 bits (325), Expect = 1e-34
 Identities = 56/263 (21%), Positives = 91/263 (34%), Gaps = 28/263 (10%)

Query: 35  SRWFNEQKHDSSDDFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWN 94
           +          +    P  E RD     GL N+G+TC+++S+LQ   HN  F +      
Sbjct: 117 AILAKYWDDVCTKTMVPSMERRDG--LSGLINMGSTCFMSSILQCLIHNPYFIRH---SM 171

Query: 95  PREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKL-----LVDPTDFVLTLG-- 147
            +  S      S            +  L       Q S+              +      
Sbjct: 172 SQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKI 231

Query: 148 ---LDRSYQQDAQEFSKLFLSNFVEEKFRVQ---------SLPHIKNFIKDYFSGEYVYV 195
              L    QQDA EF +  ++   +               +    +  +   F G     
Sbjct: 232 NQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESS 291

Query: 196 TKCFACGNETDRS-EIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNA 252
             C  C N +  + + F +L +++   K L E +  F K+E L+    Y C  C   Q+A
Sbjct: 292 IVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDF-NYHCGECNSTQDA 350

Query: 253 GRRIRLKYLPKVLNLQLMRFVFD 275
            +++ +  LP VL LQL RF   
Sbjct: 351 IKQLGIHKLPSVLVLQLKRFEHL 373

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score =  126 bits (318), Expect = 3e-34
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 46/260 (17%)

Query: 48  DFDPDQELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSL 107
           D   +Q         GL NLG TCY+N+ +Q        + A+  +     +  +   + 
Sbjct: 1   DMTEEQLASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASA- 59

Query: 108 GFSGFYEPQTAIGHLQMLFALMQHSNKLLVDPTDFVLTLGLDRSY-----------QQDA 156
                   Q     L+ LF  M  ++   + P   +  L +               QQDA
Sbjct: 60  --------QYITAALRDLFDSMDKTSS-SIPPIILLQFLHMAFPQFAEKGEQGQYLQQDA 110

Query: 157 QEF---------------SKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFAC 201
            E                    +           +    K+ I  +F  E+    KC   
Sbjct: 111 NECWIQMMRVLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTES 170

Query: 202 GNETDRSEIFYELVVNV-----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRI 256
             E        +L ++       K L   ++  L+EE+             +     +  
Sbjct: 171 EEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEIT-----KQSPTLQRNALYIKSS 225

Query: 257 RLKYLPKVLNLQLMRFVFDR 276
           ++  LP  L +Q++RF +  
Sbjct: 226 KISRLPAYLTIQMVRFFYKE 245

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score =  117 bits (295), Expect = 3e-31
 Identities = 62/251 (24%), Positives = 93/251 (37%), Gaps = 44/251 (17%)

Query: 62  IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGH 121
            GL+NLG TC++NS+LQ   +    R   L      D    +N                 
Sbjct: 10  AGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALV------EEFAK 63

Query: 122 LQMLFALMQHSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQS 176
           L  +  +   S   +V P++F   +           QQDAQEF +  L     E  RV  
Sbjct: 64  L--IQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTL 121

Query: 177 LPHIKN-------------------------FIKDYFSGEYVYVTKCFACGNETDRSEIF 211
            P                              I D F G+      C  CG  +   + F
Sbjct: 122 RPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 181

Query: 212 YEL------VVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVL 265
           ++L            TL + MR F KE++L+GD++  C RC  ++   ++  ++  PK+L
Sbjct: 182 WDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKIL 241

Query: 266 NLQLMRFVFDR 276
            L L RF   R
Sbjct: 242 VLHLKRFSESR 252

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score =  117 bits (294), Expect = 1e-30
 Identities = 57/248 (22%), Positives = 97/248 (39%), Gaps = 41/248 (16%)

Query: 63  GLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL 122
           GL+NLG TCY+NS+LQ   +           N  +D   ++N  LG  G           
Sbjct: 64  GLRNLGNTCYMNSILQCLCNAPHLADYFN-RNCYQDDINRSNL-LGHKG-----EVAEEF 116

Query: 123 QMLFALMQHSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL 177
            ++   +       + P DF +T+G          QQD+QE     +    E+  +  + 
Sbjct: 117 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 176

Query: 178 PHIKN-------------------------FIKDYFSGEYVYVTKCFACGNETDRSEIFY 212
              K                           I   F G++    +C  C  ++   E F 
Sbjct: 177 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 236

Query: 213 ----ELVVNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQ 268
                L      TL + +R F KEE L  +++++C+ C  ++++ ++I +  LP VL + 
Sbjct: 237 YLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVH 296

Query: 269 LMRFVFDR 276
           L RF +D 
Sbjct: 297 LKRFSYDG 304

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355

 Score =  114 bits (287), Expect = 6e-30
 Identities = 62/268 (23%), Positives = 96/268 (35%), Gaps = 62/268 (23%)

Query: 62  IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGH 121
           +GL+NLG TC++N++LQ      P R   L          +  P  G +     +     
Sbjct: 4   VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLR-----RDFRQEVPGGGRAQ----ELTEAF 54

Query: 122 LQMLFALMQHSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQS 176
             ++ AL    +   V+PT F               QQDAQEF KL +     E  R   
Sbjct: 55  ADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGR 114

Query: 177 LPHIKN----------------------------------------FIKDYFSGEYVYVT 196
                                                          I D F G+     
Sbjct: 115 RAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCL 174

Query: 197 KCFACGNETDRSEIFYELVVNV--------CKTLDESMREFLKEELLEGDDQYFCNRCGK 248
           KC ACG  +   E+F +L + +          +L +    F KEE LE ++   C+RC +
Sbjct: 175 KCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQ 234

Query: 249 KQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           K  + +++ ++  P++L L L RF   R
Sbjct: 235 KTRSTKKLTVQRFPRILVLHLNRFSASR 262

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score =  106 bits (265), Expect = 8e-27
 Identities = 60/266 (22%), Positives = 88/266 (33%), Gaps = 58/266 (21%)

Query: 62  IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGH 121
            GL NLG TC++NS LQ   +  P     L      ++E   +  LG  G          
Sbjct: 9   CGLGNLGNTCFMNSALQCLSNTAPLTDYFL--KDEYEAEINRDNPLGMKGE-----IAEA 61

Query: 122 LQMLFALMQHSNKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQS 176
              L   M       V P  F   +G          QQD+QE     L    E+  RV+ 
Sbjct: 62  YAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKK 121

Query: 177 LPHIKN-------------------------FIKDYFSGEYVYVTKCFACGNETDRSEIF 211
            P+++                           I D F G +     C  C   +   + F
Sbjct: 122 KPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPF 181

Query: 212 YELVVNV---------------------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQ 250
             L + +                        L + +  F   E L   D ++C  C K Q
Sbjct: 182 CYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQ 241

Query: 251 NAGRRIRLKYLPKVLNLQLMRFVFDR 276
            A ++  L  LPK+L + L RF ++R
Sbjct: 242 QATKKFDLWSLPKILVVHLKRFSYNR 267

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 88.4 bits (218), Expect = 6e-20
 Identities = 52/300 (17%), Positives = 89/300 (29%), Gaps = 65/300 (21%)

Query: 31  SLGESRWFNEQKHDSSDDFDPDQELRDPNE---FIGLKNLGATCYVNSLLQLWFHNLPFR 87
           ++ E      Q+    +          P     + G++NLG +CY+NS++Q+ F    F+
Sbjct: 311 TMTELEIDMNQRIGEWELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQ 370

Query: 88  KAVLDWNPREDSEEKNNPSLGF------------SGFYEPQTAIGHLQMLFALMQHSNKL 135
           +  +D   +       +P+  F            SG Y                +     
Sbjct: 371 RKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERVPEQKEVQD- 429

Query: 136 LVDPTDFVLTLGLD----RSY-QQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSG 190
            + P  F   +G       +  QQDAQEF  L L N VE   R    P+      + F  
Sbjct: 430 GIAPRMFKALIGKGHPEFSTNRQQDAQEFF-LHLINMVERNCRSSENPN------EVFRF 482

Query: 191 EYVYVTKCFACGNETDRSEIFYELVVNVCK------------------------------ 220
                 KC A         + Y + + V                                
Sbjct: 483 LVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELV 542

Query: 221 ----TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
                    +  +   E ++    ++      K  A +  R    P  L +Q+ +F F  
Sbjct: 543 RAQVPFSSCLEAYGAPEQVDD---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGL 599

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 42/246 (17%), Positives = 71/246 (28%), Gaps = 71/246 (28%)

Query: 22  CKGNPFCLASLGES------RWFNEQKHDSSDDFDPDQELR----DPNEFIGLKNLGATC 71
              NP  L+ + ES       W +  KH + D      E      +P E+          
Sbjct: 323 LTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEY---------- 371

Query: 72  YVNSLLQLWFHNLP-FRK------AVLD--WN--PREDSE----EKNNPSLGFSGFYEPQ 116
                 +  F  L  F         +L   W    + D      + +  SL      E  
Sbjct: 372 ------RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 117 TAIGHLQMLFALMQ------H--------------SNKLLVDPTD--FVLTLG--LDRSY 152
            +I  + +   +        H              S+ L+    D  F   +G  L    
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 153 Q-QDAQEFSKLFLS-NFVEEKFRVQSLP-HIKNFIKDYFSGEYVYVTKCFACGNETDRSE 209
             +    F  +FL   F+E+K R  S   +    I +       Y  K + C N+     
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY--KPYICDNDPKYER 543

Query: 210 IFYELV 215
           +   ++
Sbjct: 544 LVNAIL 549

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 46/352 (13%), Positives = 89/352 (25%), Gaps = 117/352 (33%)

Query: 28  CLASLGESRWFNEQK---HDSSDDFDPD---------------QELRDPNEFI---GLKN 66
                  +R + EQ+   ++ +  F                   ELR P + +   G+  
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLG 160

Query: 67  LGATCYVNSLLQ------------LW--FHNLPFRKAVLD--WN--PREDSEEKNNPSLG 108
            G T     +               W    N    + VL+       + D    +     
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 109 FSGFYEPQTAIGHLQMLFALMQHSNKLLV-----DPT-----DF-----VLT-------- 145
            +      +    L+ L     + N LLV     +       +      + T        
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 146 LGLDRSYQQDAQEFSKLF--------LSNFVEEKFRVQSLPH------------IKNFIK 185
           L    +        S           L  +++ +   Q LP             I   I+
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--PQDLPREVLTTNPRRLSIIAESIR 338

Query: 186 DYFS--GEYVYVT---------KCFACGNETDRSEIFYELVV---NV---CKTLDESMRE 228
           D  +    + +V                   +  ++F  L V   +       L      
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-----S 393

Query: 229 FLKEELLEGDDQYFCNRCGK-----KQNAGRRIR-----LKYLPKVLNLQLM 270
            +  ++++ D     N+  K     KQ     I      L+   K+ N   +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	100.0
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	100.0
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	100.0
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	100.0
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	100.0
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	100.0
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	100.0
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	100.0
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	100.0
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	100.0
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	99.83
3mp2_A	211	Non-structural protein 3; papain-like protease, TG	92.64
2fe8_A	315	PP1AB, ORF1AB, replicase polyprotein 1AB; protease	90.65
1qmy_A	167	Protease, leader protease; hydrolase, sulfhydryl p	88.75

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.3e-48  Score=349.74  Aligned_cols=212  Identities=25%  Similarity=0.364  Sum_probs=182.4

Q ss_pred             CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcc
Q psy2295          57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLL  136 (276)
Q Consensus        57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~  136 (276)
                      ..++++||.|+||||||||+||+|+++|+|+++++..............       .....+..+|+.||..|+.+....
T Consensus         4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~L~~~l~~~~~~~   76 (367)
T 2y6e_A            4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPL-------GMKGEIAEAYAELIKQMWSGRDAH   76 (367)
T ss_dssp             CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTT-------SCTTHHHHHHHHHHHHHTSSSCSE
T ss_pred             CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCC-------CcchHHHHHHHHHHHHHHcCCCCC
Confidence            4578999999999999999999999999999999976433221110000       012478999999999999988889


Q ss_pred             cCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc--------------------------chhhhhh
Q psy2295         137 VDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP--------------------------HIKNFIK  185 (276)
Q Consensus       137 i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~--------------------------~~~~~i~  185 (276)
                      ++|..|+..++     |.+++|||||||+.+||+ .|++++......                          ...++|.
T Consensus        77 i~P~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd-~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~  155 (367)
T 2y6e_A           77 VAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLD-GLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIV  155 (367)
T ss_dssp             ECCHHHHHHHHHHCGGGCSSSCCCHHHHHHHHHH-HHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHH
T ss_pred             cCHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHH-HHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccc
Confidence            99999999886     889999999999999999 999987542211                          0236799


Q ss_pred             hccceEEEEEEEeCCCCCeeeeeecceeeeeccc---------------------ccHHHHHHHhhccceecCCCccccC
Q psy2295         186 DYFSGEYVYVTKCFACGNETDRSEIFYELVVNVC---------------------KTLDESMREFLKEELLEGDDQYFCN  244 (276)
Q Consensus       186 ~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~---------------------~sl~~~L~~~~~~e~l~g~n~~~C~  244 (276)
                      ++|+|++.+.++|..|++.+.+.|+|+.|+|+|.                     .+|+++|+.|+++|.++|+|+|+|+
T Consensus       156 ~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~  235 (367)
T 2y6e_A          156 DTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCP  235 (367)
T ss_dssp             HHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEET
T ss_pred             cccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCC
Confidence            9999999999999999999999999999999981                     4899999999999999999999999


Q ss_pred             cCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295         245 RCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       245 ~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                      +|++++.|+|+..|.++|+||+|||+||.|++
T Consensus       236 ~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~  267 (367)
T 2y6e_A          236 NCKKHQQATKKFDLWSLPKILVVHLKRFSYNR  267 (367)
T ss_dssp             TTTEEECCEEEEEEEECCSEEEEEEECEEECS
T ss_pred             CCCCCceEEEEEEEecCCcEEEEEEeCeeecC
Confidence            99999999999999999999999999999973

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=100.00  E-value=2.7e-47  Score=344.29  Aligned_cols=210  Identities=25%  Similarity=0.454  Sum_probs=181.6

Q ss_pred             CCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCccc
Q psy2295          58 PNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLV  137 (276)
Q Consensus        58 ~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i  137 (276)
                      .++++||.|+||||||||+||+|+++|+|+++++............  ..     .....+..+++.+++.||.+....+
T Consensus        59 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~--~~-----~~~~~l~~~~~~l~~~l~~~~~~~i  131 (396)
T 2gfo_A           59 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSN--LL-----GHKGEVAEEFGIIMKALWTGQYRYI  131 (396)
T ss_dssp             STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTC--TT-----SCTTHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccC--CC-----CcccHHHHHHHHHHHHHHcCCCceE
Confidence            4689999999999999999999999999999998754321110000  00     0124688899999999999888899


Q ss_pred             CcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc--------------------------chhhhhhh
Q psy2295         138 DPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP--------------------------HIKNFIKD  186 (276)
Q Consensus       138 ~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~--------------------------~~~~~i~~  186 (276)
                      +|..|+.+++     |.+++|||||||+.+||+ .|++++......                          ...++|.+
T Consensus       132 ~P~~f~~~l~~~~~~f~~~~QqDA~EFl~~LLd-~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~  210 (396)
T 2gfo_A          132 SPKDFKITIGKINDQFAGYSQQDSQELLLFLMD-GLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVA  210 (396)
T ss_dssp             CCHHHHHHHHHHCGGGSSSSCCCHHHHHHHHHH-HHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             CHHHHHHHHHHhchhhcCCCCCChHHHHHHHHH-HHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccch
Confidence            9999999885     889999999999999999 999988643211                          12467999


Q ss_pred             ccceEEEEEEEeCCCCCeeeeeecceeeeecc----cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCC
Q psy2295         187 YFSGEYVYVTKCFACGNETDRSEIFYELVVNV----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLP  262 (276)
Q Consensus       187 ~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP  262 (276)
                      +|+|++.+.++|..|++++.+.|+|+.|+|+|    ..+|+++|+.|+++|.++|+|+|+|++|+.++.|.|+..|.++|
T Consensus       211 lF~G~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP  290 (396)
T 2gfo_A          211 LFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLP  290 (396)
T ss_dssp             HHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECC
T ss_pred             hhCcEEEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCC
Confidence            99999999999999999999999999999999    35999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEeceeec
Q psy2295         263 KVLNLQLMRFVFD  275 (276)
Q Consensus       263 ~vL~i~L~Rf~~d  275 (276)
                      +||+|||+||.||
T Consensus       291 ~vLiihLkRF~~~  303 (396)
T 2gfo_A          291 PVLLVHLKRFSYD  303 (396)
T ss_dssp             SEEEEEECCEEEC
T ss_pred             cEEEEEecceecc
Confidence            9999999999997

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=100.00  E-value=4.2e-47  Score=336.93  Aligned_cols=212  Identities=27%  Similarity=0.447  Sum_probs=182.4

Q ss_pred             cCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHh-cCC
Q psy2295          55 LRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQ-HSN  133 (276)
Q Consensus        55 ~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~-~~~  133 (276)
                      .+..++++||.|+||||||||+||+|+++|+||++++...........         ......+..+|+.||..|+ .+.
T Consensus         3 sk~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~---------~~~~~~l~~~l~~l~~~l~~~~~   73 (348)
T 3nhe_A            3 SKSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHG---------SNAHTALVEEFAKLIQTIWTSSP   73 (348)
T ss_dssp             ---CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSS---------CCTTHHHHHHHHHHHHHHTTCCT
T ss_pred             CCCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccC---------CCcccHHHHHHHHHHHHHHcCCC
Confidence            456789999999999999999999999999999999875433221110         1114679999999999999 566


Q ss_pred             CcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc--------------------------chhh
Q psy2295         134 KLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP--------------------------HIKN  182 (276)
Q Consensus       134 ~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~--------------------------~~~~  182 (276)
                      ...++|..|+..++     |.++.|||||||+.+||+ .|++++......                          ...+
T Consensus        74 ~~~~~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~lLd-~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (348)
T 3nhe_A           74 NDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLD-GLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDS  152 (348)
T ss_dssp             TCEECCHHHHHHHHHHSGGGSSSCCBCHHHHHHHHHH-HHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCC
T ss_pred             CCccCHHHHHHHHHHhhhhhCCCCccCHHHHHHHHHH-HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCC
Confidence            78999999999986     889999999999999999 999998542211                          1135


Q ss_pred             hhhhccceEEEEEEEeCCCCCeeeeeecceeeeeccc------ccHHHHHHHhhccceecCCCccccCcCCCceeeEEEE
Q psy2295         183 FIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVC------KTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRI  256 (276)
Q Consensus       183 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~------~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~  256 (276)
                      +|.++|.|++.+.++|..|++.+.+.|+|+.|+|+|.      .+|+++|+.|+++|.++|+|+|.|++|+.++.+.|+.
T Consensus       153 ~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~  232 (348)
T 3nhe_A          153 RIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKF  232 (348)
T ss_dssp             HHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEE
T ss_pred             ccccccceEEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEE
Confidence            6999999999999999999999999999999999992      4999999999999999999999999999999999999


Q ss_pred             EeccCCceEEEEEeceeecC
Q psy2295         257 RLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       257 ~i~~lP~vL~i~L~Rf~~dr  276 (276)
                      .|.++|+||+|||+||.|++
T Consensus       233 ~i~~lP~vL~i~lkRf~~~~  252 (348)
T 3nhe_A          233 SIQRFPKILVLHLKRFSESR  252 (348)
T ss_dssp             EEEECCSEEEEEECCBCCCS
T ss_pred             EeecCCceEEEEEEcccccC
Confidence            99999999999999999863

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=100.00  E-value=7e-47  Score=336.39  Aligned_cols=207  Identities=29%  Similarity=0.476  Sum_probs=177.3

Q ss_pred             CCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCC-ccc
Q psy2295          59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNK-LLV  137 (276)
Q Consensus        59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~-~~i  137 (276)
                      +|++||.|+||||||||+||+|+++|+||++++..........          ......+..+|+.||..|+.+.. ..+
T Consensus         1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~----------~~~~~~l~~~l~~l~~~l~~~~~~~~v   70 (355)
T 3i3t_A            1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPG----------GGRAQELTEAFADVIGALWHPDSCEAV   70 (355)
T ss_dssp             --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC----------------CHHHHHHHHHHHHTSSCSSCCCB
T ss_pred             CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCC----------CCchhHHHHHHHHHHHHHhcCCCCCcc
Confidence            5799999999999999999999999999999987533211100          00124799999999999998754 689


Q ss_pred             CcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCc----------------------------------
Q psy2295         138 DPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP----------------------------------  178 (276)
Q Consensus       138 ~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~----------------------------------  178 (276)
                      +|..|+..++     |.++.|||||||+.+||+ .|++++......                                  
T Consensus        71 ~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd-~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T 3i3t_A           71 NPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLME-RLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANL  149 (355)
T ss_dssp             CCHHHHHHHHHHCGGGCSSCCCBHHHHHHHHHH-HHHHHHCCC----------------------------CCHHHHHHH
T ss_pred             cHHHHHHHHHHhChhhCCCCccCHHHHHHHHHH-HHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHH
Confidence            9999999986     889999999999999999 999998643211                                  


Q ss_pred             -------chhhhhhhccceEEEEEEEeCCCCCeeeeeecceeeeeccc--------ccHHHHHHHhhccceecCCCcccc
Q psy2295         179 -------HIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELVVNVC--------KTLDESMREFLKEELLEGDDQYFC  243 (276)
Q Consensus       179 -------~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~--------~sl~~~L~~~~~~e~l~g~n~~~C  243 (276)
                             ...++|.++|.|++.+.++|..|++.+.+.|+|+.|+|+|.        .+|+++|+.|+++|.++|+|+|.|
T Consensus       150 ~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C  229 (355)
T 3i3t_A          150 MWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVC  229 (355)
T ss_dssp             HHHHHHHHCCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCC
T ss_pred             HHHHhhhccCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeC
Confidence                   01356999999999999999999999999999999999992        399999999999999999999999


Q ss_pred             CcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295         244 NRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       244 ~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                      ++|++++.|+|+..|.++|+||+|||+||.|++
T Consensus       230 ~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~  262 (355)
T 3i3t_A          230 DRCRQKTRSTKKLTVQRFPRILVLHLNRFSASR  262 (355)
T ss_dssp             SSSCCCCCEEEEEEEEECCSEEEEEECCEECCS
T ss_pred             CCCCCccceEEEEEcccCChheEEEhhheecCC
Confidence            999999999999999999999999999999873

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=100.00  E-value=1.4e-45  Score=328.34  Aligned_cols=199  Identities=35%  Similarity=0.564  Sum_probs=176.1

Q ss_pred             CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcc
Q psy2295          57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLL  136 (276)
Q Consensus        57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~  136 (276)
                      +.++++||.|+||||||||+||+|+++|+||++++........              ...++..+|+.+|..|+.+. .+
T Consensus         2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~~~--------------~~~~~~~~l~~lf~~l~~~~-~~   66 (353)
T 1nb8_A            2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDD--------------SSKSVPLALQRVFYELQHSD-KP   66 (353)
T ss_dssp             CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTTSC--------------TTTCHHHHHHHHHHHHHHCS-SC
T ss_pred             CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCCCc--------------ccccHHHHHHHHHHHHhhcC-CC
Confidence            4578999999999999999999999999999999875322110              12468899999999999876 57


Q ss_pred             cCcHHHHHHhC---CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeeccee
Q psy2295         137 VDPTDFVLTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYE  213 (276)
Q Consensus       137 i~p~~~~~~l~---~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~  213 (276)
                      ++|..|+..++   |.++.|||||||+.+||+ .|++++...   ...++|.++|+|++.+.++|..|++.+.+.|+|+.
T Consensus        67 ~~~~~l~~~~~~~~~~~~~QqDA~EFl~~LLd-~L~~~~~~~---~~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~  142 (353)
T 1nb8_A           67 VGTKKLTKSFGWETLDSFMQHDVQELCRVLLD-NVENKMKGT---CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYD  142 (353)
T ss_dssp             BCCHHHHHHHTCCBTTTTTTSCHHHHHHHHHH-HHHHHTTTS---TTTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESC
T ss_pred             CCCHHHHhhcCCCCCCcccchhHHHHHHHHHH-HHHHHhcCC---CccchhhhhceeEEEEEEEeccCCCeeceeeeeEE
Confidence            89999999886   778999999999999999 999987543   23468999999999999999999999999999999


Q ss_pred             eeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         214 LVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       214 l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      |+|+|  ..+|.++|+.|+.+|.++|+|+|.|+.|+ .+.|.|+..|.++|+||+|||+||.||
T Consensus       143 LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~  205 (353)
T 1nb8_A          143 IQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYD  205 (353)
T ss_dssp             EEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--
T ss_pred             EEEEECCCcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEe
Confidence            99999  67999999999999999999999999996 678999999999999999999999997

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=100.00  E-value=4e-44  Score=324.31  Aligned_cols=206  Identities=21%  Similarity=0.272  Sum_probs=172.2

Q ss_pred             cCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCC
Q psy2295          55 LRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNK  134 (276)
Q Consensus        55 ~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~  134 (276)
                      .+....++||.|+||||||||+||+|+++|+||++++.+.........         .....++.++|+.||..|+.+. 
T Consensus         8 ~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~l~~~l~~lf~~l~~~~-   77 (404)
T 2ayn_A            8 ASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGE---------MASAQYITAALRDLFDSMDKTS-   77 (404)
T ss_dssp             ---CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC---------------CHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HhccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCC---------CCcccHHHHHHHHHHHHHhcCC-
Confidence            335678999999999999999999999999999999987544111000         0113679999999999999876 


Q ss_pred             cccCcHHHHHHhC-----CC------CCccccHHHHHHHHHHHHHHHHhhccCC----------------cchhhhhhhc
Q psy2295         135 LLVDPTDFVLTLG-----LD------RSYQQDAQEFSKLFLSNFVEEKFRVQSL----------------PHIKNFIKDY  187 (276)
Q Consensus       135 ~~i~p~~~~~~l~-----~~------~~~QqDa~Efl~~ll~~~l~~~~~~~~~----------------~~~~~~i~~~  187 (276)
                      ..++|..|+..++     |.      ++.|||||||+.+||+ .|++++....+                ....++|.++
T Consensus        78 ~~v~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd-~L~~~~~~~~~~~~~e~~~~~~~~~~~~~~~s~i~~~  156 (404)
T 2ayn_A           78 SSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMR-VLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQF  156 (404)
T ss_dssp             SEECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHH-HHHTTSCCCCCC------------------CCHHHHH
T ss_pred             CcCChHHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHH-HHHHHhccccCCcccccchhhhhhhhccccCchhhhh
Confidence            8899999999875     44      5899999999999999 99999865331                1234689999


Q ss_pred             cceEEEEEEEeCCCCCee--eeeecceeeeecc---cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCC
Q psy2295         188 FSGEYVYVTKCFACGNET--DRSEIFYELVVNV---CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLP  262 (276)
Q Consensus       188 F~g~~~~~~~C~~C~~~s--~~~e~f~~l~l~i---~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP  262 (276)
                      |+|++.+.++|..|++.+  .+.|+|+.|+|+|   ..+|+++|+.++.+ .++    |.|++|++.+.++|+.+|.++|
T Consensus       157 F~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e-~l~----~~c~~c~~~~~~~k~~~i~~lP  231 (404)
T 2ayn_A          157 FGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQE-EIT----KQSPTLQRNALYIKSSKISRLP  231 (404)
T ss_dssp             TCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEE-CCC----CEETTTTEECCEEEEEEEEECC
T ss_pred             ccEEEEEEEEecCCCCccCceeeccCceEEeecCCCcccHHHHHHHhccc-cee----ecchhhCCccceeeeeeHhhCC
Confidence            999999999999999995  7999999999999   35899999999974 444    7999999999999999999999


Q ss_pred             ceEEEEEeceeecC
Q psy2295         263 KVLNLQLMRFVFDR  276 (276)
Q Consensus       263 ~vL~i~L~Rf~~dr  276 (276)
                      +||+|||+||.||+
T Consensus       232 ~vL~i~LkRF~~~~  245 (404)
T 2ayn_A          232 AYLTIQMVRFFYKE  245 (404)
T ss_dssp             SSEEEEEECBCCCC
T ss_pred             CceEEEEEEEEEec
Confidence            99999999999973

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=100.00  E-value=3.3e-43  Score=328.02  Aligned_cols=202  Identities=34%  Similarity=0.555  Sum_probs=177.4

Q ss_pred             cCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCC
Q psy2295          55 LRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNK  134 (276)
Q Consensus        55 ~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~  134 (276)
                      .+..++++||.|+||||||||+||+|+++|+||++++........              ...++..+|+.||..|+.+. 
T Consensus       169 ~~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~~~--------------~~~~~~~~l~~lf~~l~~~~-  233 (522)
T 2f1z_A          169 SKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDD--------------SSKSVPLALQRVFYELQHSD-  233 (522)
T ss_dssp             TTTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCSSC--------------TTTCHHHHHHHHHHHHHHCS-
T ss_pred             ccccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccCCc--------------ccchHHHHHHHHHHHHhcCC-
Confidence            345688999999999999999999999999999999875322110              12468899999999999876 


Q ss_pred             cccCcHHHHHHhC---CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecc
Q psy2295         135 LLVDPTDFVLTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIF  211 (276)
Q Consensus       135 ~~i~p~~~~~~l~---~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f  211 (276)
                      .+++|..|+..++   |.++.|||||||+.+||+ .|+++++..   ...++|.++|+|++.+.++|..|++.+.+.|+|
T Consensus       234 ~~~~~~~l~~~~~~~~~~~~~QqDa~Efl~~LLd-~L~~~l~~~---~~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f  309 (522)
T 2f1z_A          234 KPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLD-NVENKMKGT---CVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDY  309 (522)
T ss_dssp             SCBCCTTHHHHTCCCTTTSSTTSCHHHHHHHHHH-HHHHHHTTS---TTTTHHHHHHCEEEEEEECCSSSCCCCCEEEEE
T ss_pred             CccCcHHHHhhcCCccCCCcccccHHHHHHHHHH-HHHhhccCC---ccccchhhheeEEEEEEEEcCCCCceeeeeeee
Confidence            6789999999886   778999999999999999 999988643   234689999999999999999999999999999


Q ss_pred             eeeeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295         212 YELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       212 ~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                      +.|+|+|  ..+|+++|+.|+.+|.++|+|+|.|+.|+ .+.|+|+..|.++|+||+|||+||.||.
T Consensus       310 ~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~  375 (522)
T 2f1z_A          310 YDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDP  375 (522)
T ss_dssp             SCEEECCTTCCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECS
T ss_pred             EEEEEEeCCcccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcc
Confidence            9999999  67999999999999999999999999996 5789999999999999999999999973

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=100.00  E-value=9.7e-43  Score=316.43  Aligned_cols=205  Identities=23%  Similarity=0.301  Sum_probs=165.0

Q ss_pred             cccCCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcC
Q psy2295          53 QELRDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHS  132 (276)
Q Consensus        53 ~~~~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~  132 (276)
                      ...+...+++||.|+||||||||+||+|+++|+||++++.+...........     .......++..+|+.||..|+.+
T Consensus        16 ~~~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~lf~~l~~~   90 (415)
T 1vjv_A           16 QVQQFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGA-----QDEEIHKQIVIEMKRCFENLQNK   90 (415)
T ss_dssp             ---CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTS-----TTHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCccc-----ccccchhHHHHHHHHHHHHHhcC
Confidence            3455678899999999999999999999999999999998754322110000     00001357999999999999998


Q ss_pred             CCcccCcHHHHHHhC-----CC-------CCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCC
Q psy2295         133 NKLLVDPTDFVLTLG-----LD-------RSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFA  200 (276)
Q Consensus       133 ~~~~i~p~~~~~~l~-----~~-------~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~  200 (276)
                      ....++|..|+..++     |.       ++.||||+||+.+||+ .|++++..       ++|.++|+ ++.+.++|..
T Consensus        91 ~~~~v~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd-~L~~~~~~-------~~i~~~F~-~~~~~~~C~~  161 (415)
T 1vjv_A           91 SFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFH-SMSIVFGD-------KFSEDFRI-QFKTTIKDTA  161 (415)
T ss_dssp             -CCEECCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHH-HHHHHHTH-------HHHTTTCE-EEEEEEEETT
T ss_pred             CCCccCHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHH-HHHHHhcc-------chHHHHHH-hheEEEEECC
Confidence            888999999999885     55       7999999999999999 99999843       68999999 9999999999


Q ss_pred             CCCee--eeeecceeeeecc---cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         201 CGNET--DRSEIFYELVVNV---CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       201 C~~~s--~~~e~f~~l~l~i---~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      |++++  .+.|+|+.|+|+|   ..+|+++|+.++.++ ++    |.|++|++.+.++|+.+|.++|+||+|||+||.||
T Consensus       162 C~~~s~s~~~e~f~~Lsl~i~~~~~~l~~~L~~~~~e~-i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~  236 (415)
T 1vjv_A          162 NDNDITVKENESDSKLQCHISGTTNFMRNGLLEGLNEK-IE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWK  236 (415)
T ss_dssp             EEEEEEEECCCEESCEEECCCTTCCBHHHHHHHHHEEC--------------CCCCEEEEEEEEECBSEEEEEECCEEEE
T ss_pred             CCCCccccccccceeeeeccccccchHHHHHHHHhhhh-hh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEe
Confidence            99986  5899999999999   358999999999854 44    79999999999999999999999999999999997


Q ss_pred             C
Q psy2295         276 R  276 (276)
Q Consensus       276 r  276 (276)
                      +
T Consensus       237 ~  237 (415)
T 1vjv_A          237 R  237 (415)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=100.00  E-value=3.8e-42  Score=317.73  Aligned_cols=208  Identities=25%  Similarity=0.387  Sum_probs=173.0

Q ss_pred             CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCC--
Q psy2295          57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNK--  134 (276)
Q Consensus        57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~--  134 (276)
                      ..+|++||.|+||||||||+||+|+++|+||++++..........          .....++.++|+.+|..|+....  
T Consensus       137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~----------~~~~~~l~~~l~~l~~~l~~~~~~~  206 (476)
T 3mhs_A          137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKV----------RSPDKCFSCALDKIVHELYGALNTK  206 (476)
T ss_dssp             GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSS----------CCTTTCHHHHHHHHHHHHHSCCCC-
T ss_pred             CCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccC----------CCcccchHHHHHHHHHHHhhccccc
Confidence            457899999999999999999999999999999986432211100          00125689999999999987432  


Q ss_pred             -------cccCcHHHHHHhC--------CCCCccccHHHHHHHHHHHHHHHHhhccCC----------cchhhhhhhccc
Q psy2295         135 -------LLVDPTDFVLTLG--------LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL----------PHIKNFIKDYFS  189 (276)
Q Consensus       135 -------~~i~p~~~~~~l~--------~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~----------~~~~~~i~~~F~  189 (276)
                             ..+.|..+...++        |.+++|||||||+.+||+ .|++++.....          ....++|.++|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd-~L~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~  285 (476)
T 3mhs_A          207 QASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIIN-QIHQSYVLDLPNAKEVSRANNKQCECIVHTVFE  285 (476)
T ss_dssp             -------CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHH-HHHHHHHHHCCC-------CCCSCCSHHHHHSC
T ss_pred             ccccccccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHH-HHHHHHhhcccccccccccccccCCCcceeecc
Confidence                   2566776665442        889999999999999999 99988754221          123568999999


Q ss_pred             eEEEEEEEeCCCCCee-eeeecceeeeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEE
Q psy2295         190 GEYVYVTKCFACGNET-DRSEIFYELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLN  266 (276)
Q Consensus       190 g~~~~~~~C~~C~~~s-~~~e~f~~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~  266 (276)
                      |++.+.++|..|+.++ .+.++|+.|+|+|  ..+|+++|+.|+++|.+++.+ |.|++|+.++.++|+.+|.++|+||+
T Consensus       286 G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~  364 (476)
T 3mhs_A          286 GSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLV  364 (476)
T ss_dssp             EEEEEEEECTTTCCCCEEEEEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEE
T ss_pred             eEEEEEEEECCCCCeeCCcccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceE
Confidence            9999999999999997 4599999999999  789999999999999999655 99999999999999999999999999


Q ss_pred             EEEeceeecC
Q psy2295         267 LQLMRFVFDR  276 (276)
Q Consensus       267 i~L~Rf~~dr  276 (276)
                      |||+||.|++
T Consensus       365 i~LkRF~~~~  374 (476)
T 3mhs_A          365 LQLKRFEHLL  374 (476)
T ss_dssp             EEECCEEECT
T ss_pred             EEeeeccccC
Confidence            9999999863

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-41  Score=331.47  Aligned_cols=201  Identities=21%  Similarity=0.279  Sum_probs=173.5

Q ss_pred             CCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcC---
Q psy2295          56 RDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHS---  132 (276)
Q Consensus        56 ~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~---  132 (276)
                      ....+++||.|+||||||||+||+|+++|+||++++...........         ......+..+|++||..|+.+   
T Consensus       339 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~---------~~~~~~l~~~l~~L~~~L~s~~~s  409 (854)
T 3ihp_A          339 LFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAP---------TDPTQDFSTQVAKLGHGLLSGEYS  409 (854)
T ss_dssp             CCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCC---------SCGGGCHHHHHHHHHHHHHSCC--
T ss_pred             ccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhcccc---------CCccccHHHHHHHHHHHHhccccc
Confidence            34678999999999999999999999999999999853211000000         001357999999999999863   


Q ss_pred             -----------------CCcccCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccce
Q psy2295         133 -----------------NKLLVDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSG  190 (276)
Q Consensus       133 -----------------~~~~i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g  190 (276)
                                       ....++|..|+..++     |.+++||||+|||.+||+ .|+++++.      .+.|.++|+|
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd-~L~~el~~------~s~i~~lF~G  482 (854)
T 3ihp_A          410 KPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLIN-MVERNCRS------SENPNEVFRF  482 (854)
T ss_dssp             -------------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHH-HHHHTCTT------SCCGGGGTCE
T ss_pred             cccccccccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHH-HHHHHhcc------cCCchhhcCc
Confidence                             345899999999986     788999999999999999 99999853      3578999999


Q ss_pred             EEEEEEEeCCCCCeeeeeecceeeeeccc----------------------------------ccHHHHHHHhhccceec
Q psy2295         191 EYVYVTKCFACGNETDRSEIFYELVVNVC----------------------------------KTLDESMREFLKEELLE  236 (276)
Q Consensus       191 ~~~~~~~C~~C~~~s~~~e~f~~l~l~i~----------------------------------~sl~~~L~~~~~~e~l~  236 (276)
                      ++.+.++|..|++++.+.++|+.|+|+|.                                  .+|+++|+.|+.+|.++
T Consensus       483 ~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le  562 (854)
T 3ihp_A          483 LVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVD  562 (854)
T ss_dssp             EEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEE
T ss_pred             eEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEee
Confidence            99999999999999999999999999992                                  39999999999999999


Q ss_pred             CCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         237 GDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       237 g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      |   |+|++|+.++.|.|+.+|.++|+||+|||+||.||
T Consensus       563 ~---y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d  598 (854)
T 3ihp_A          563 D---FWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFG  598 (854)
T ss_dssp             E---EEETTTTEEEEEEEEEEESSCCSEEEEEECCEEEC
T ss_pred             e---eeccccCCcceeeEEEEeeeCCceEEEEeehheec
Confidence            5   99999999999999999999999999999999996

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=99.83  E-value=3.7e-21  Score=167.16  Aligned_cols=97  Identities=14%  Similarity=0.148  Sum_probs=77.0

Q ss_pred             CCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHH-HHHHHHHhcCCCccc
Q psy2295          59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHL-QMLFALMQHSNKLLV  137 (276)
Q Consensus        59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~lf~~l~~~~~~~i  137 (276)
                      +.|+||.|+||||||||.||+|+++|++++.++.+.......            .....+..+| +.||..|..   ..+
T Consensus         7 g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~------------~~~~~l~~~L~r~i~~~Lrk---~~~   71 (374)
T 2vhf_A            7 GKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDV------------EYYSETQELLRTEIVNPLRI---YGY   71 (374)
T ss_dssp             EESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSC------------TTHHHHHHHHHHTTHHHHHH---TSE
T ss_pred             CCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcc------------hhHHHHHHHHHHHHHHHHhh---cCC
Confidence            469999999999999999999999999999999885442210            0123688899 899999987   679


Q ss_pred             CcHHHHHHhC-----C---C--CCccccHHHHHHHHHHHHHHHH
Q psy2295         138 DPTDFVLTLG-----L---D--RSYQQDAQEFSKLFLSNFVEEK  171 (276)
Q Consensus       138 ~p~~~~~~l~-----~---~--~~~QqDa~Efl~~ll~~~l~~~  171 (276)
                      .|..|+..|+     |   .  ++.||||.||+..||. .|...
T Consensus        72 ~P~~~l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~-~L~~~  114 (374)
T 2vhf_A           72 VCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFH-HILRV  114 (374)
T ss_dssp             ECHHHHHHHHHHHHHHC--------CCCHHHHHHHHHT-TTTCC
T ss_pred             CcHHHHHHHHHHhHHHhcccCCCccccCHHHHHHHHHH-HHhhc
Confidence            9999999886     2   2  5899999999999999 66543

>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}

Probab=92.64  E-value=0.32  Score=38.87  Aligned_cols=85  Identities=28%  Similarity=0.311  Sum_probs=53.2

Q ss_pred             CCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCccc
Q psy2295          58 PNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLV  137 (276)
Q Consensus        58 ~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i  137 (276)
                      -.|.+=|+=.-|+||+||++=.|-+....                                   ++.++..+     ..-
T Consensus        10 ~nG~~vLkq~dNNCwVNaa~l~LQ~~~~~-----------------------------------~~~aw~~f-----~~G   49 (211)
T 3mp2_A           10 LNGKIILKQGDNNCWINACCYQLQAFDFF-----------------------------------NNEAWEKF-----KKG   49 (211)
T ss_dssp             ETTEEEECCCTTCHHHHHHHHHHTTCTTC-----------------------------------CCHHHHHH-----TTT
T ss_pred             ECCEEEEEccCCCcHHHHHHHHHHhcChh-----------------------------------HHHHHHHH-----hCC
Confidence            34555566678999999998666444332                                   12222222     223


Q ss_pred             CcHHHHHHh----CCCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCC
Q psy2295         138 DPTDFVLTL----GLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGN  203 (276)
Q Consensus       138 ~p~~~~~~l----~~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~  203 (276)
                      +|..|...+    +...|+-.||+++|..|+.                    ++=.......++|. ||.
T Consensus        50 d~~~fV~~~Ya~~~~~~G~~gDa~~~L~~Ll~--------------------~~~~a~~v~~~~C~-Cg~   98 (211)
T 3mp2_A           50 DVMDFVNLCYAATTLARGHSGDAEYLLELMLN--------------------DYSTAKIVLAAKCG-CGE   98 (211)
T ss_dssp             CCHHHHHHHHHHHTCCTTSCCCHHHHHHHHHT--------------------TCCCEEEEEEEEET-TEE
T ss_pred             ChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH--------------------hhccceEEEEEEEc-CCC
Confidence            455555433    5777888999999999987                    22233455677886 876

>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*

Probab=90.65  E-value=0.67  Score=39.44  Aligned_cols=71  Identities=18%  Similarity=0.203  Sum_probs=44.9

Q ss_pred             CCcccccccCCcchhhHHHHHHhcCHH-HHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCccc
Q psy2295          59 NEFIGLKNLGATCYVNSLLQLWFHNLP-FRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLV  137 (276)
Q Consensus        59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~-f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i  137 (276)
                      .+.+=|+=.-|+||+||++=.|-+... |+                            .   .+|+.++..+.     .-
T Consensus       100 ~G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~----------------------------~---~~l~~aw~~f~-----~G  143 (315)
T 2fe8_A          100 GGLTSIKWADNNCYLSSVLLALQQLEVKFN----------------------------A---PALQEAYYRAR-----AG  143 (315)
T ss_dssp             TTEECCCCCTTTHHHHHHHHHHHTSCCCBS----------------------------S---HHHHHHHHHHH-----HT
T ss_pred             CCEEEEeecCCccHHHHHHHHHHhcCCccC----------------------------C---HHHHHHHHHHh-----CC
Confidence            455556667899999999755533321 10                            1   13444444442     24


Q ss_pred             CcHHHHHHh----CCCCCccccHHHHHHHHHH
Q psy2295         138 DPTDFVLTL----GLDRSYQQDAQEFSKLFLS  165 (276)
Q Consensus       138 ~p~~~~~~l----~~~~~~QqDa~Efl~~ll~  165 (276)
                      +|..|...+    +...|+-.||+++|..|++
T Consensus       144 d~~~FVa~~Ya~~~~~~G~~gDa~~~L~~Ll~  175 (315)
T 2fe8_A          144 DAANFCALILAYSNKTVGELGDVRETMTHLLQ  175 (315)
T ss_dssp             CCHHHHHHHHHHTTCCTTSCCCHHHHHHHHHT
T ss_pred             ChHHHHHHHHHhcCCCCCCCccHHHHHHHHHh
Confidence            566665543    4778888999999999988

>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R

Probab=88.75  E-value=0.13  Score=38.14  Aligned_cols=36  Identities=25%  Similarity=0.284  Sum_probs=27.1

Q ss_pred             CCCcccccccCCcchhhHHHHHHhcC-HHHHHHHhcc
Q psy2295          58 PNEFIGLKNLGATCYVNSLLQLWFHN-LPFRKAVLDW   93 (276)
Q Consensus        58 ~~~~~GL~NlgntCY~NS~LQ~L~~~-p~f~~~l~~~   93 (276)
                      ++.+.|+.|..++|++|++||+.... .+|-+..+..
T Consensus        10 kk~fys~pN~hdncWLNtilQLfryvdepfFd~~y~s   46 (167)
T 1qmy_A           10 KKTFYSRPNNHDNAWLNAILQLFRYVEEPFFDWVYSS   46 (167)
T ss_dssp             EEECCCCCCSSSCHHHHHHHHHHHHHTCCTTHHHHTC
T ss_pred             ccccccCCCCCcchHHHHHHHHHHHcCccchhhccCC
Confidence            35688999999999999999987543 3455555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	9e-26
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	2e-22
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	1e-20
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	3e-19
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	3e-19

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (254), Expect = 9e-26
 Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 18/223 (8%)

Query: 62  IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGH 121
           +G KN+G TCY+N+ LQ  +     R  +L++NP +                  +  +  
Sbjct: 7   VGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEE-----IHKQIVIE 61

Query: 122 LQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRV---QSLP 178
           ++  F  +Q+ +   V P   + TL        +       +     EE F         
Sbjct: 62  MKRCFENLQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSI 121

Query: 179 HIKNFIKDYFSGEYVYVTKCFACGNE--TDRSEIFYELVVNVCKTLDESMREFLKEELLE 236
              +   + F  ++    K  A  N+     +E   +L  ++  T       F++  LLE
Sbjct: 122 VFGDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKLQCHISGT-----TNFMRNGLLE 176

Query: 237 GDDQYF---CNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR 276
           G ++      +  G         ++  LPK L +Q +RF + R
Sbjct: 177 GLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKR 219

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (229), Expect = 2e-22
 Identities = 54/250 (21%), Positives = 96/250 (38%), Gaps = 41/250 (16%)

Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
             GL+NLG TCY+NS+LQ   +             ++D    N          E      
Sbjct: 15  LTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEE------ 68

Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLGLDRSY-----QQDAQEFSKLFLSNFVEEKFRVQ 175
              ++   +       + P DF +T+G          QQD+QE     +    E+  +  
Sbjct: 69  -FGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKAD 127

Query: 176 SLPHIK-------------------------NFIKDYFSGEYVYVTKCFACGNETDRSEI 210
           +    K                         + I   F G++    +C  C  ++   E 
Sbjct: 128 NRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEA 187

Query: 211 FYELVVNV----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLN 266
           F  L + +      TL + +R F KEE L  +++++C+ C  ++++ ++I +  LP VL 
Sbjct: 188 FMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLL 247

Query: 267 LQLMRFVFDR 276
           + L RF +D 
Sbjct: 248 VHLKRFSYDG 257

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 1e-20
 Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 19/217 (8%)

Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
           ++GLKN GATCY+NSLLQ  F     RKAV       D   K+ P               
Sbjct: 6   YVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPL-------------- 51

Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLGLDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHI 180
            LQ +F  +QHS+K  V       + G   +     Q   +      ++          +
Sbjct: 52  ALQRVFYELQHSDK-PVGTKKLTKSFG-WETLDSFMQHDVQELCRVLLDNVENKMKGTCV 109

Query: 181 KNFIKDYFSGEYVYVTKCFACGNETDRSEIF--YELVVNVCKTLDESMREFLKEELLEGD 238
           +  I   F G+ V   +C      +DR E +   +L +   K + ES  +++  E L+GD
Sbjct: 110 EGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGD 169

Query: 239 DQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
           ++Y        Q A + ++   LP VL+LQLMRF++D
Sbjct: 170 NKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYD 205

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (206), Expect = 3e-19
 Identities = 62/253 (24%), Positives = 95/253 (37%), Gaps = 46/253 (18%)

Query: 61  FIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIG 120
             GL+NLG TC++NS+LQ   +    R   L      D    +N              + 
Sbjct: 3   LAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTAL---------VE 53

Query: 121 HLQMLFALMQHSNKLLVDPTDFVLTLGLDRSY------QQDAQEFSKLFLSNFVEEKFRV 174
               L   +  S+   V       T     +       QQDAQEF +  L     E  RV
Sbjct: 54  EFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRV 113

Query: 175 -------------------------QSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSE 209
                                    + L    + I D F G+      C  CG  +   +
Sbjct: 114 TLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFD 173

Query: 210 IFYELVVNVCK------TLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPK 263
            F++L + + K      TL + MR F KE++L+GD++  C RC  ++   ++  ++  PK
Sbjct: 174 PFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPK 233

Query: 264 VLNLQLMRFVFDR 276
           +L L L RF   R
Sbjct: 234 ILVLHLKRFSESR 246

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (206), Expect = 3e-19
 Identities = 38/241 (15%), Positives = 76/241 (31%), Gaps = 36/241 (14%)

Query: 62  IGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGH 121
            GL NLG TCY+N+ +Q        + A+  +     +  +   +         Q     
Sbjct: 5   CGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASA---------QYITAA 55

Query: 122 LQMLFALMQHSNKLLVDPTDFVLTLGL-----------DRSYQQDAQEFSKLFLSNFVEE 170
           L+ LF  M  ++   + P   +  L +            +  QQDA E     +    ++
Sbjct: 56  LRDLFDSMDKTSS-SIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQK 114

Query: 171 ---------------KFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFYELV 215
                               +    K+ I  +F  E+    KC     E        +L 
Sbjct: 115 LEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQ 174

Query: 216 VNVCKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD 275
           ++     +        +  L+ +         +     +  ++  LP  L +Q++RF + 
Sbjct: 175 LSCFINQEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYK 234

Query: 276 R 276
            
Sbjct: 235 E 235

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	100.0
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	100.0
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	100.0
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	100.0
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.97
d1qmya_	156	FMDV leader protease {Foot-and-mouth disease virus	86.65

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-42  Score=302.48  Aligned_cols=200  Identities=34%  Similarity=0.555  Sum_probs=177.6

Q ss_pred             CCCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCc
Q psy2295          56 RDPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKL  135 (276)
Q Consensus        56 ~~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~  135 (276)
                      |+.+|++||.|+||||||||+||+|+++|+||++++........              ...++..+|+.+|..|+.+. .
T Consensus         1 ~~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~~~--------------~~~~~~~~l~~lf~~l~~~~-~   65 (347)
T d1nbfa_           1 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDD--------------SSKSVPLALQRVFYELQHSD-K   65 (347)
T ss_dssp             CCSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTTCC--------------TTTCHHHHHHHHHHHHHHCS-S
T ss_pred             CCCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccCCc--------------ccchHHHHHHHHHHHHhcCC-C
Confidence            46789999999999999999999999999999999877544221              13578999999999999877 6


Q ss_pred             ccCcHHHHHHhC---CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCeeeeeecce
Q psy2295         136 LVDPTDFVLTLG---LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNETDRSEIFY  212 (276)
Q Consensus       136 ~i~p~~~~~~l~---~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~  212 (276)
                      ++.|..++..++   |..+.||||+||+..||+ .|++++....   ..+.+.++|.|++.+.++|..|++.+.+.|+|+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~qqDa~Ef~~~ll~-~l~~~~~~~~---~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~  141 (347)
T d1nbfa_          66 PVGTKKLTKSFGWETLDSFMQHDVQELCRVLLD-NVENKMKGTC---VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYY  141 (347)
T ss_dssp             CBCCHHHHHHTTCCGGGGGSCBCHHHHHHHHHH-HHHHHHTTST---TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEES
T ss_pred             CcChHHHHHhhchhhcchHHHHHHHHHHHHHHH-HHHHHHhhcc---ccccccceeceEEEEeEEeCCccceeeeecccc
Confidence            789999999986   678899999999999999 9999986433   346899999999999999999999999999999


Q ss_pred             eeeecc--cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeec
Q psy2295         213 ELVVNV--CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFD  275 (276)
Q Consensus       213 ~l~l~i--~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~d  275 (276)
                      .|+|++  ..++.++|+.++.+|.++|++.+.|..| +...+.|+..|.++|+||+|||+||.|+
T Consensus       142 ~l~L~i~~~~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~~  205 (347)
T d1nbfa_         142 DIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYD  205 (347)
T ss_dssp             SEEEECTTCCBHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEEE
T ss_pred             ccccccccccchhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeeeeeec
Confidence            999999  7899999999999999999887766654 6778999999999999999999999986

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-37  Score=274.95  Aligned_cols=201  Identities=21%  Similarity=0.275  Sum_probs=164.6

Q ss_pred             CcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccCc
Q psy2295          60 EFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVDP  139 (276)
Q Consensus        60 ~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~p  139 (276)
                      -|+||.|+||||||||+||+|+++|+||+++..+.........         ......+..+|+.||..|+.+. ..+.|
T Consensus         3 ~P~GL~N~GNtCY~NSvLQ~L~~ip~~~~~l~~~~~~~~~~~~---------~~~~~~l~~~l~~l~~~l~~~~-~~~~p   72 (383)
T d2ayna1           3 LPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGE---------MASAQYITAALRDLFDSMDKTS-SSIPP   72 (383)
T ss_dssp             CCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC---------------CHHHHHHHHHHHHHHHHHHHC-SEECC
T ss_pred             CCcCcCCCCchhHHHHHHHHHHccHHHHHHHHhhhhhccCCCc---------cccHHHHHHHHHHHHHHHhcCC-CccCH
Confidence            5799999999999999999999999999999887544221110         0113568999999999998765 77899


Q ss_pred             HHHHHHhC-----------CCCCccccHHHHHHHHHHHHHHHHhhccCCc----------------chhhhhhhccceEE
Q psy2295         140 TDFVLTLG-----------LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLP----------------HIKNFIKDYFSGEY  192 (276)
Q Consensus       140 ~~~~~~l~-----------~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~----------------~~~~~i~~~F~g~~  192 (276)
                      ..++..++           +.++.||||+||+..+++ .|++++......                ...++|.++|+|++
T Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~~~QqDa~Ef~~~ll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~lF~g~~  151 (383)
T d2ayna1          73 IILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMR-VLQQKLEAIEDDSVKETDSSSASAATPSKKKSLIDQFFGVEF  151 (383)
T ss_dssp             HHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHH-HHHTTSCCCCCC------------------CCHHHHHTCEEE
T ss_pred             HHHHHHHHHHhHhhccccccCchhhhhHHHHHHHHHH-HHHHHHHhhhccccccccchhhhhcccccCCCeeeeeeeEEE
Confidence            99988774           345679999999999999 999887653221                22467999999999


Q ss_pred             EEEEEeCCCCCeeeeeecceeeeecc-----cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEE
Q psy2295         193 VYVTKCFACGNETDRSEIFYELVVNV-----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNL  267 (276)
Q Consensus       193 ~~~~~C~~C~~~s~~~e~f~~l~l~i-----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i  267 (276)
                      .+.+.|..|+..+.+.+.+..++|++     ..++.++|+.++.++..     +.|+.|+..+.+.++.+|.++|++|+|
T Consensus       152 ~~~~~c~~c~~~~~~~~~~~~l~L~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~lP~~L~i  226 (383)
T d2ayna1         152 ETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEIT-----KQSPTLQRNALYIKSSKISRLPAYLTI  226 (383)
T ss_dssp             EEEEEESSSCCCCCBCCEEEESSEEEECSSSCCBHHHHHHHTTEECCC-----CEETTTTEECCEEEEEEEEECCSSEEE
T ss_pred             EEEEEecCCCceeeecccccccccccccccccchhhhhhhhhhccccc-----ccccccCcceeeeeeeeeecccceeee
Confidence            99999999999887776666665555     56899999999988765     489999999999999999999999999


Q ss_pred             EEeceeecC
Q psy2295         268 QLMRFVFDR  276 (276)
Q Consensus       268 ~L~Rf~~dr  276 (276)
                      ||+||.|++
T Consensus       227 ~l~R~~~~~  235 (383)
T d2ayna1         227 QMVRFFYKE  235 (383)
T ss_dssp             EEECBCCCC
T ss_pred             eccceeecc
Confidence            999999874

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-36  Score=261.08  Aligned_cols=211  Identities=25%  Similarity=0.452  Sum_probs=180.3

Q ss_pred             CCCCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcc
Q psy2295          57 DPNEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLL  136 (276)
Q Consensus        57 ~~~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~  136 (276)
                      +.+|++||.|+||||||||+||+|+++|+|+++++.............       ......+..+|+.||+.|+.+....
T Consensus        11 ~~~g~vGL~N~GNtCYlNSvLQ~L~~ip~f~~~l~~~~~~~~~~~~~~-------~~~~~~l~~~l~~l~~~l~~~~~~~   83 (348)
T d2gfoa1          11 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNL-------LGHKGEVAEEFGIIMKALWTGQYRY   83 (348)
T ss_dssp             SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCT-------TSCTTHHHHHHHHHHHHHHHSCEEE
T ss_pred             CCCCeECCccCCchhHHHHHHHHHHcCHHHHHHHHhcccccccccccc-------ccchHHHHHHHHHHHHHHHhCCCCc
Confidence            456899999999999999999999999999999986543221110000       0112579999999999999999899


Q ss_pred             cCcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCCcc--------------------------hhhhhh
Q psy2295         137 VDPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPH--------------------------IKNFIK  185 (276)
Q Consensus       137 i~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~--------------------------~~~~i~  185 (276)
                      ++|..|...++     +..+.||||+||+..+|+ .|++++.......                          ..+++.
T Consensus        84 i~~~~~~~~~~~~~~~~~~~~qqDa~E~l~~ll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~  162 (348)
T d2gfoa1          84 ISPKDFKITIGKINDQFAGYSQQDSQELLLFLMD-GLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIV  162 (348)
T ss_dssp             ECCHHHHHHHHHHCGGGSSSSCCCHHHHHHHHHH-HHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHH
T ss_pred             cccccccccccccCccccCcccCCHHHHHHHHHH-HHHHHhhhcccccccccccccccchhhhhhhhhhhccccCCchhH
Confidence            99999998885     778999999999999999 9999876432111                          135688


Q ss_pred             hccceEEEEEEEeCCCCCeeeeeecceeeeecc----cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccC
Q psy2295         186 DYFSGEYVYVTKCFACGNETDRSEIFYELVVNV----CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYL  261 (276)
Q Consensus       186 ~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i----~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~l  261 (276)
                      ++|.|.+.+...|..|+..+...+++..+.+++    ..++.++|+.|+..+.+++.+++.|++|++++...++..+..+
T Consensus       163 ~~f~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~~c~~c~~~~~~~~~~~~~~~  242 (348)
T d2gfoa1         163 ALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKL  242 (348)
T ss_dssp             HHHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEEC
T ss_pred             hhhhhhhheeccccCCCceeeccccceeechhhcccccCcHHHHHHHhhhhcccccccceeccccCcceeeeEEEEEEeC
Confidence            999999999999999999999999998888887    5689999999999999999999999999999999999999999


Q ss_pred             CceEEEEEeceeec
Q psy2295         262 PKVLNLQLMRFVFD  275 (276)
Q Consensus       262 P~vL~i~L~Rf~~d  275 (276)
                      |++|++|+.||.+|
T Consensus       243 p~~l~i~~~~~~~~  256 (348)
T d2gfoa1         243 PPVLLVHLKRFSYD  256 (348)
T ss_dssp             CSEEEEEECCEEEC
T ss_pred             Cccceeceeeeecc
Confidence            99999999999987

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-35  Score=253.57  Aligned_cols=208  Identities=28%  Similarity=0.451  Sum_probs=175.4

Q ss_pred             CCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCC-Cccc
Q psy2295          59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSN-KLLV  137 (276)
Q Consensus        59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~~i  137 (276)
                      .|++||.|+||||||||+||+|+++|+||++++...........         ......+..+++.||..|+.+. ...+
T Consensus         1 ~g~~GL~N~GNtCYlNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~---------~~~~~~l~~~l~~l~~~l~~~~~~~~i   71 (336)
T d2hd5a1           1 QGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHG---------SNAHTALVEEFAKLIQTIWTSSPNDVV   71 (336)
T ss_dssp             CCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTHHHHC---C---------CSSCCHHHHHHHHHHHHHHTSCTTCEE
T ss_pred             CCccCCcCCCcchHHHHHHHHHHcCHHHHHHHHhcchhhhcccC---------CChhHHHHHHHHHHHHHHHhCCCCCCC
Confidence            38999999999999999999999999999999875322211100         1113579999999999997654 4678


Q ss_pred             CcHHHHHHhC-----CCCCccccHHHHHHHHHHHHHHHHhhccCC--------------------------cchhhhhhh
Q psy2295         138 DPTDFVLTLG-----LDRSYQQDAQEFSKLFLSNFVEEKFRVQSL--------------------------PHIKNFIKD  186 (276)
Q Consensus       138 ~p~~~~~~l~-----~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~--------------------------~~~~~~i~~  186 (276)
                      +|..++..++     |..+.||||+||+..+++ .|++++.....                          ....+.+..
T Consensus        72 ~p~~~~~~~~~~~~~~~~~~q~Da~Ef~~~lld-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  150 (336)
T d2hd5a1          72 SPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLD-GLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGD  150 (336)
T ss_dssp             CCHHHHHHHHHHCGGGSSCCCBCHHHHHHHHHH-HHHHHTCCC------------CCCHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             CchhhhcccccccccccCcccccHHHHHHHHHH-HHHHHHhhhhcccccCccccccccchhhHHHHHHhhhccccchhhh
Confidence            9999998875     789999999999999999 99999754221                          112466888


Q ss_pred             ccceEEEEEEEeCCCCCeeeeeecceeeeecc------cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEecc
Q psy2295         187 YFSGEYVYVTKCFACGNETDRSEIFYELVVNV------CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKY  260 (276)
Q Consensus       187 ~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i------~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~  260 (276)
                      .|.++......|..|+..+.+.+.+..+.+++      ..+|+++|+.|+++|.+++++.+.|+.|...+.+.+...+.+
T Consensus       151 ~f~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~e~l~~~~~~~~~~~~~~~~~~k~~~~~~  230 (336)
T d2hd5a1         151 LFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQR  230 (336)
T ss_dssp             HHCEEEEEEEEETTTCCEEEEEEEESSEEEECC------CBHHHHHHHHTSCEEECGGGCCEETTTTEECCEEEEEEEEE
T ss_pred             hhhhheeeeeeccccCceeeecccccccccccccccCCCCCHHHHHHhcCCceEecCcccccccccccceeeEEEEEEee
Confidence            99999999999999999999999999999987      458999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEeceeecC
Q psy2295         261 LPKVLNLQLMRFVFDR  276 (276)
Q Consensus       261 lP~vL~i~L~Rf~~dr  276 (276)
                      +|++|+||++||.+++
T Consensus       231 ~P~~l~i~~~r~~~~~  246 (336)
T d2hd5a1         231 FPKILVLHLKRFSESR  246 (336)
T ss_dssp             CCSEEEEEEECEECCS
T ss_pred             cccchhhhhhhhhhcc
Confidence            9999999999999863

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.4e-31  Score=233.45  Aligned_cols=199  Identities=23%  Similarity=0.288  Sum_probs=146.1

Q ss_pred             CCcccccccCCcchhhHHHHHHhcCHHHHHHHhccCCCCCccccCCCCCCCCCCCCcccHHHHHHHHHHHHhcCCCcccC
Q psy2295          59 NEFIGLKNLGATCYVNSLLQLWFHNLPFRKAVLDWNPREDSEEKNNPSLGFSGFYEPQTAIGHLQMLFALMQHSNKLLVD  138 (276)
Q Consensus        59 ~~~~GL~NlgntCY~NS~LQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~i~  138 (276)
                      .-|+||.|+||||||||+||+|+++|+|+++++.+.+..........     .......++.+|++||..|+.+....++
T Consensus         4 ~~p~GL~N~GNtCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~l~~~l~~~~~~~i~   78 (397)
T d1vjva_           4 QLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQ-----DEEIHKQIVIEMKRCFENLQNKSFKSVL   78 (397)
T ss_dssp             CCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTST-----THHHHHHHHHHHHHHHHHHHCC-CCEEC
T ss_pred             CCCCCCCCCCccHHHHHHHHHHHcCHHHHHHHHhCCccccccccccc-----ccchHHHHHHHHHHHHHHHHhCCCCccC
Confidence            45899999999999999999999999999999987654332211100     0011346899999999999999988999


Q ss_pred             cHHHHHHhC------------CCCCccccHHHHHHHHHHHHHHHHhhccCCcchhhhhhhccceEEEEEEEeCCCCCee-
Q psy2295         139 PTDFVLTLG------------LDRSYQQDAQEFSKLFLSNFVEEKFRVQSLPHIKNFIKDYFSGEYVYVTKCFACGNET-  205 (276)
Q Consensus       139 p~~~~~~l~------------~~~~~QqDa~Efl~~ll~~~l~~~~~~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s-  205 (276)
                      |..|+..++            +.++.|||||||+..|++ .|++++.        +.+...|.+.+...+.|..+.... 
T Consensus        79 p~~~~~~l~~~~~~~~~~~~~~~~~~QqDa~Efl~~ll~-~l~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~  149 (397)
T d1vjva_          79 PVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFH-SMSIVFG--------DKFSEDFRIQFKTTIKDTANDNDIT  149 (397)
T ss_dssp             CHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHH-HHHHHHT--------HHHHTTTCEEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHhhhhccccccccccccccHHHHHHHHHH-HHHHHhc--------cchhhhhcceeeeeEEecccccccc
Confidence            999999874            356789999999999999 9999874        457788888988888887765543 


Q ss_pred             -eeeecceeeeecc---cccHHHHHHHhhccceecCCCccccCcCCCceeeEEEEEeccCCceEEEEEeceeecC
Q psy2295         206 -DRSEIFYELVVNV---CKTLDESMREFLKEELLEGDDQYFCNRCGKKQNAGRRIRLKYLPKVLNLQLMRFVFDR  276 (276)
Q Consensus       206 -~~~e~f~~l~l~i---~~sl~~~L~~~~~~e~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~L~Rf~~dr  276 (276)
                       ...+.+..+++.+   ...+...+...+.. .++    ..|+.|+....+.++..+.++|++|++||+||.||.
T Consensus       150 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~i~~~p~~l~i~l~R~~~~~  219 (397)
T d1vjva_         150 VKENESDSKLQCHISGTTNFMRNGLLEGLNE-KIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKR  219 (397)
T ss_dssp             EECCCEESCEEECCCTTCCBHHHHHHHHHEE-C-------------CCCCEEEEEEEEECBSEEEEEECCEEEET
T ss_pred             eecceeeeeeeeeeccceeechHHHHhhhhh-hhc----ccccccCCCceeeeeceeecCCceeEEEeeeeeecc
Confidence             3445555666666   44555555554443 233    478888888888999999999999999999999874

>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: FMDV leader protease
domain: FMDV leader protease
species: Foot-and-mouth disease virus [TaxId: 12110]

Probab=86.65  E-value=0.14  Score=35.77  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=22.5

Q ss_pred             CCcccccccCCcchhhHHHHHHhcC-HHHHHHHhc
Q psy2295          59 NEFIGLKNLGATCYVNSLLQLWFHN-LPFRKAVLD   92 (276)
Q Consensus        59 ~~~~GL~NlgntCY~NS~LQ~L~~~-p~f~~~l~~   92 (276)
                      .-+.|..|..| |++||+||+.... .+|-+..+.
T Consensus        12 ~f~s~pnnhdN-cWLN~ilQLfryv~epfFd~~y~   45 (156)
T d1qmya_          12 TFYSRPNNHDN-AWLNAILQLFRYVEEPFFDWVYS   45 (156)
T ss_dssp             ECCCCCCSSSC-HHHHHHHHHHHHHTCCTTHHHHT
T ss_pred             eeecCCCcccc-hHHHHHHHHHHHcCccchhhccC
Confidence            34666777777 9999999987543 345455544