Psyllid ID: psy2305

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVKQ
Secondary Structure (PSIPRED)
cccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccEEEEEEEccccEEEEEEEcccEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccccccccEEEEEEcccccEEEEEccccEEEEEccccccEEEEEccccccccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEcccccEEEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccccEEEEcccccEEEEEEcccccccEEEEccccccEEEEEccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEccccccccccEEEEEEcccccEEEcccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEccccccccccEEEEEEEcccccEEEEccccEEEEEEccccccHHHHHHHHcccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEccccccEEEEEEccccccEEEEEccccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEcccccccccEEEEcccccccccEccc
Coil and Loop (DISEMBL)
mdieedvdeapdgtclltnsndnhlrtfdlpselhcksvwrpsnqrpklnytlkikeggiiydyvwypktssidgftsyflcssmyapihlwdsvggeikatyrpynqvdevTHAYSLAFSLDGNKIYAGFLSEVKIfstdrpgrecvsrnlkpwfRKNIVSAiainpvhpdicalGTYSKIIGlfsdsdgrplfflkghnggithlefssngillfsgarkDCEIICwdlrnpgcilhtfprqvstnqrVYFDLTScsnyllsgntngdlSIWNvntsnlpsspyeesvqeplykfsahqdctngvrwkhhkFERDLLVAdatcsgqitnvkq
Flexible Loop (DISEMBL)
mdieedvdeapdgtcLLTNSNDNHLRTFDLPSELHCksvwrpsnqrpklnyTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKifstdrpgrecVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLvadatcsgqitnvkq
Low Complexity Region (SEG)
MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVKQ
Disordered region (IsUnstruct)
**************CLL*****NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT**************PLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG*******
Disordered Region (DISOPRED)
MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK*
Disordered Region (DISEMBL)
**********PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLP*********EPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVKQ
Disordered Region (DISPRO)
MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQI*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
Q8VC51	532	Telomerase Cajal body pro	yes	N/A	0.850	0.533	0.459	1e-72
Q5XII5	532	Telomerase Cajal body pro	yes	N/A	0.862	0.541	0.461	4e-72
Q3SWZ7	540	Telomerase Cajal body pro	yes	N/A	0.847	0.524	0.459	2e-71
Q60525	538	Telomerase Cajal body pro	N/A	N/A	0.865	0.537	0.463	3e-71
Q9BUR4	548	Telomerase Cajal body pro	yes	N/A	0.862	0.525	0.45	2e-69
O59762	399	Guanine nucleotide-bindin	yes	N/A	0.784	0.656	0.278	1e-21
Q8YRI1	1526	Uncharacterized WD repeat	no	N/A	0.739	0.161	0.231	3e-06
Q6P5M2	305	WD repeat-containing prot	no	N/A	0.523	0.573	0.287	2e-05
P49846	704	Transcription initiation	no	N/A	0.305	0.144	0.296	4e-05
Q99973	2627	Telomerase protein compon	no	N/A	0.275	0.035	0.299	0.0001

>sp|Q8VC51|WAP53_MOUSE Telomerase Cajal body protein 1 OS=Mus musculus GN=Wrap53 PE=2 SV=1

 Score =  273 bits (698), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 140/305 (45%), Positives = 198/305 (64%), Gaps = 21/305 (6%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYT-----LKIKEGGIIYDY 64
           APDG+C+LTNS DN LR ++LP EL+        +++ +++Y      L++ EG  IYDY
Sbjct: 162 APDGSCILTNSADNVLRIYNLPPELY--------SEQEQVDYAEMVPVLRMVEGDTIYDY 213

Query: 65  VWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG 124
            WY   SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG
Sbjct: 214 CWYSLMSSTQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDG 273

Query: 125 NKIYAGFLSEVKIFSTDRPGRECVSRN--LKPWFRKNIVSAIAINPVHPDICALGTYSKI 182
           ++++ GF   V++FST RPGR+C  R    K   +  I+S IA +P  P + A G+Y + 
Sbjct: 274 SQLFCGFNRTVRVFSTSRPGRDCEVRATFAKKQGQSGIISCIAFSPSQP-LYACGSYGRT 332

Query: 183 IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
           IGL++  DG PL  L GH GGITHL F  +G L FSGARKD E++CWDLR PG +L +  
Sbjct: 333 IGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLS 392

Query: 243 RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302
           R+V+TNQR+YFDL     +L+SGNT+G +S+W+++      +  ++S  EP+  F   +D
Sbjct: 393 REVTTNQRIYFDLDPSGQFLVSGNTSGVVSVWDIS-----GALSDDSKLEPVVTFLPQKD 447

Query: 303 CTNGV 307
           CTNGV
Sbjct: 448 CTNGV 452

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.
Mus musculus (taxid: 10090)

>sp|Q5XII5|WAP53_RAT Telomerase Cajal body protein 1 OS=Rattus norvegicus GN=Wrap53 PE=2 SV=1

 Score =  271 bits (694), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 139/301 (46%), Positives = 193/301 (64%), Gaps = 13/301 (4%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
           APDG+C+LTNS DN LR ++LP EL+ +S         ++   L++ EG  IYDY WY  
Sbjct: 162 APDGSCILTNSADNVLRIYNLPPELYSESE---QVDYAEMVPVLRMVEGDTIYDYCWYSL 218

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
            SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG++++ 
Sbjct: 219 MSSTQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFC 278

Query: 130 GFLSEVKIFSTDRPGRECVSRN--LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
           GF   V++FST RPGR+C  R    K   +  I+S +A +P  P + A G+Y + +GL++
Sbjct: 279 GFNRTVRVFSTSRPGRDCEVRTTFAKKQGQSGIISCLAFSPAQP-LYACGSYGRTLGLYA 337

Query: 188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
             DG PL  L GH GGITHL F  +G L FSGARKD E++CWDLR PG +L +  R+V+T
Sbjct: 338 WDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVTT 397

Query: 248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQ-EPLYKFSAHQDCTNG 306
           NQR+YFDL     +L+SGNT+G +S+W++      S  + +  Q EP+  F    DCTNG
Sbjct: 398 NQRIYFDLDPSGQFLVSGNTSGVVSVWDI------SGAFSDCKQLEPVMTFLPQDDCTNG 451

Query: 307 V 307
           V
Sbjct: 452 V 452

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.

Rattus norvegicus (taxid: 10116)

>sp|Q3SWZ7|WAP53_BOVIN Telomerase Cajal body protein 1 OS=Bos taurus GN=WRAP53 PE=2 SV=1

 Score =  269 bits (688), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 140/305 (45%), Positives = 191/305 (62%), Gaps = 22/305 (7%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYT-----LKIKEGGIIYDY 64
           APDG+C+LTNS DN LR ++LP EL+        N+  +L Y      L++ EG  IYDY
Sbjct: 169 APDGSCILTNSADNILRIYNLPPELY--------NEGEQLEYAEMAPVLRMVEGDTIYDY 220

Query: 65  VWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG 124
            WY   SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG
Sbjct: 221 CWYSLMSSAQPDTSYVASSSRENPIHIWDAFTGELRASFRSYNHLDELTAAHSLCFSPDG 280

Query: 125 NKIYAGFLSEVKIFSTDRPGRECVSRN--LKPWFRKNIVSAIAINPVHPDICALGTYSKI 182
           ++++ GF   V++FST RPGR+C  R    K   +  I+S IA +P  P + A G+Y + 
Sbjct: 281 SQLFCGFNRTVRVFSTSRPGRDCEVRTTFAKRQGQSGIISCIAFSPTQP-LYACGSYGRS 339

Query: 183 IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
           +GL++  DG PL  L GH GGITHL F  +G   FSGARKD E++CWDLR  G  L +  
Sbjct: 340 LGLYTWEDGSPLALLGGHQGGITHLCFHPDGNCFFSGARKDAELLCWDLRQLGHPLWSLS 399

Query: 243 RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302
           R+V+TNQR+YFDL     +L+SG+T+G +S+W+   + L S P      EP+  F   +D
Sbjct: 400 REVTTNQRIYFDLDPTGQFLVSGSTSGAVSVWDTGGAGLESKP------EPVLSFQPQKD 453

Query: 303 CTNGV 307
           CTNGV
Sbjct: 454 CTNGV 458

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.

Bos taurus (taxid: 9913)

>sp|Q60525|WAP53_MESAU Telomerase Cajal body protein 1 OS=Mesocricetus auratus GN=Wrap53 PE=2 SV=1

 Score =  268 bits (686), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 139/300 (46%), Positives = 192/300 (64%), Gaps = 11/300 (3%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
           APDG+C+LTNS DN LR ++LP EL+  +         ++   L++ EG  IYDY WY  
Sbjct: 166 APDGSCILTNSADNTLRIYNLPPELYSATE---QVDYAEMVPVLRMVEGDTIYDYCWYSL 222

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
            SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG++++ 
Sbjct: 223 MSSSQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFC 282

Query: 130 GFLSEVKIFSTDRPGRECVSRN--LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
           GF   V++FST RPGR+C  R    K   +  I+S IA +P  P + A G+Y + +GL++
Sbjct: 283 GFNRTVRVFSTSRPGRDCEVRATFAKKQGQSGIISCIAFSPSQP-LYACGSYGRTLGLYA 341

Query: 188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
             DG PL  L GH GGITHL F  +G L FSGARKD E++CWDLR PG +L +  R+V+T
Sbjct: 342 WDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVTT 401

Query: 248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
           NQR+YFDL     +L+SGNTNG +S+W+++ +   SS        P+  F   +DCTNGV
Sbjct: 402 NQRIYFDLDPSGQFLVSGNTNGMVSVWDISGAFGDSSKL-----GPVMTFLPQKDCTNGV 456

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.

Mesocricetus auratus (taxid: 10036)

>sp|Q9BUR4|WAP53_HUMAN Telomerase Cajal body protein 1 OS=Homo sapiens GN=WRAP53 PE=1 SV=1

 Score =  263 bits (671), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 135/300 (45%), Positives = 189/300 (63%), Gaps = 12/300 (4%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
           APDG+C+LTNS DN LR ++LP EL+ +       +  ++   L++ EG  IYDY WY  
Sbjct: 178 APDGSCILTNSADNILRIYNLPPELYHEGE---QVEYAEMVPVLRMVEGDTIYDYCWYSL 234

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
            SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG++++ 
Sbjct: 235 MSSAQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFC 294

Query: 130 GFLSEVKIFSTDRPGRECVSRN--LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
           GF   V++FST RPGR+C  R    K   +  I+S IA +P  P + A G+Y + +GL++
Sbjct: 295 GFNRTVRVFSTARPGRDCEVRATFAKKQGQSGIISCIAFSPAQP-LYACGSYGRSLGLYA 353

Query: 188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
             DG PL  L GH GGITHL F  +G   FSGARKD E++CWDLR  G  L +  R+V+T
Sbjct: 354 WDDGSPLALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTT 413

Query: 248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
           NQR+YFDL     +L+SG+T+G +S+W+ +       P  +   EP+  F   +DCTNGV
Sbjct: 414 NQRIYFDLDPTGQFLVSGSTSGAVSVWDTD------GPGNDGKPEPVLSFLPQKDCTNGV 467

Essential component of the telomerase holoenzyme complex, a ribonucleoprotein complex essential for the replication of chromosome termini that elongates telomeres in most eukaryotes. In the telomerase holoenzyme complex, it controls telomerase localization to Cajal body. Required for delivery of TERC to telomeres during S phase and for telomerase activity. Binds small Cajal body RNAs (scaRNAs). The mRNA encoding this protein plays a critical role in the regulation of p53 expression at the post-transcriptional level; it is involved both in maintaining basal p53 mRNA levels and in p53 induction upon DNA damage.

Homo sapiens (taxid: 9606)

>sp|O59762|GNR1_SCHPO Guanine nucleotide-binding protein negative regulator 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gnr1 PE=1 SV=1

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 133/276 (48%), Gaps = 14/276 (5%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
           +PDG+ +L+ + D  L  +++P     K    P N    L+Y  +  E   +Y Y WY +
Sbjct: 55  SPDGSTILSLTEDQCLNCWNVPFSDLSKKADGPLNFSKHLSYKYQSPE--TVYSYSWYSR 112

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
               D  ++ F  SS   PI L +   G+ KA+Y   +  +    ++ L F+ DG  + A
Sbjct: 113 MKLDDPSSNLFAVSSRDQPIKLINFTTGKNKASYHMIDHQERYQGSHCLQFTNDGEYLIA 172

Query: 130 GFLSEVKIFSTDRPGRECVSRNLKPWFR--------KNIVSAIAINPVHPDICALGTYSK 181
           G  + +  F+     +E V   +   ++        K I S  ++NP+     A+GTYS 
Sbjct: 173 GDKNCLHHFNIRTGCKEPVMTTVTHGYKVPLWEFSLKGIQSCFSLNPMDSKTLAVGTYSN 232

Query: 182 IIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH 239
            +G+++D   RP  L F      G+THL++  +G  L+ G+R   +I  WD+R    +++
Sbjct: 233 RVGIYNDCGRRPCQLEFSIERGNGVTHLQWCEDGEKLYVGSRCSDKIEVWDIRYVRDMVY 292

Query: 240 TFP-RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW 274
                +  TNQR+ FD T   + +L+G T+G +  W
Sbjct: 293 ALEGHRGDTNQRILFD-TDKKDEILAGGTDGSIRRW 327

Negatively regulates the pheromone-response pathway. Acts as a structural mimic of the G protein beta subunit thereby interacting with gpa1 which then inhibits gpa1 signaling.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 124/285 (43%), Gaps = 38/285 (13%)

Query: 11   PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
            PDG+ L + S+D  +R +D+ S     +    +N    + +                   
Sbjct: 1252 PDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAF------------------- 1292

Query: 71   SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130
             + DG  S     S    + LW+    +   T++ +      +   S+ FS DG  + +G
Sbjct: 1293 -NPDG--SMLASGSGDQTVRLWEISSSKCLHTFQGHT-----SWVSSVTFSPDGTMLASG 1344

Query: 131  FLSE-VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS 189
               + V+++S      EC+   L      N V ++  +P    I A G+  + + L+S S
Sbjct: 1345 SDDQTVRLWSISSG--ECLYTFLG---HTNWVGSVIFSP-DGAILASGSGDQTVRLWSIS 1398

Query: 190  DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQ 249
             G+ L+ L+GHN  +  + FS +G LL SG+  D  +  W++ +  C L+T    +++ +
Sbjct: 1399 SGKCLYTLQGHNNWVGSIVFSPDGTLLASGS-DDQTVRLWNISSGEC-LYTLHGHINSVR 1456

Query: 250  RVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL 294
             V F  +S    L SG+ +  + +W+V T     +   E + E +
Sbjct: 1457 SVAF--SSDGLILASGSDDETIKLWDVKTGECIKTLKSEKIYEGM 1499

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q6P5M2|WDR61_DANRE WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 23/198 (11%)

Query: 39  VWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWD-SVGG 97
           VW+ S+++ +L +TL+  + G++        + +I    +    SS+ A I LWD   G 
Sbjct: 46  VWKWSDEKLELQWTLEGHQLGVV--------SVNISQNGAIAASSSLDAHIRLWDLETGK 97

Query: 98  EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPGRECVSRNLKPWF 156
           +IK+       VD    A+++AFS D   I  G  L +V IF  +   +E    +L    
Sbjct: 98  QIKS--MDAGPVD----AWTVAFSPDSKYIATGSHLGKVNIFGVESGKKE---HSLDT-- 146

Query: 157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILL 216
           R   + +IA +P      A G    II +F  + G+ L  L+GH   I  L FS +  LL
Sbjct: 147 RGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL 205

Query: 217 FSGARKDCEIICWDLRNP 234
            + A  D  I  +D+++ 
Sbjct: 206 VT-ASDDGYIKIYDVQHA 222

Danio rerio (taxid: 7955)

>sp|P49846|TAF5_DROME Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 170 HPD--ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEII 227
           HP+    A G+  + + L+ +  G+ +  + GH G ++ L FS+ G  L SG+  D  II
Sbjct: 543 HPNSNYVATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFSACGRYLASGS-VDHNII 601

Query: 228 CWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN 275
            WDL N G ++ T  R  ST   + F  +     L +   + +L++W+
Sbjct: 602 IWDLSN-GSLVTTLLRHTSTVTTITF--SRDGTVLAAAGLDNNLTLWD 646

TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. May play a role in helping to anchor Taf4 within the TFIID complex. May be involved in transducing signals from various transcriptional regulators to the RNA polymerase II transcription machinery.

Drosophila melanogaster (taxid: 7227)

>sp|Q99973|TEP1_HUMAN Telomerase protein component 1 OS=Homo sapiens GN=TEP1 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 25/117 (21%)

Query: 197  LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG--CILHTFPRQVSTNQRVYFD 254
            L+GH G ++   FS++G  L +G R D  ++CWD+R P    ++H+FP       R +  
Sbjct: 2057 LRGHEGPVSCCSFSTDGGSLATGGR-DRSLLCWDVRTPKTPVLIHSFP----ACHRDW-- 2109

Query: 255  LTSCS----NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
            +T C+    N L+S +++G + +W+            ES Q  L +F  HQ   + V
Sbjct: 2110 VTGCAWTKDNLLISCSSDGSVGLWD-----------PESGQR-LGQFLGHQSAVSAV 2154

Component of the telomerase ribonucleoprotein complex that is essential for the replication of chromosome termini. Also component of the ribonucleoprotein vaults particle, a multi-subunit structure involved in nucleo-cytoplasmic transport. Responsible for the localizing and stabilizing vault RNA (vRNA) association in the vault ribonucleoprotein particle. Binds to TERC.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
291239913	546	PREDICTED: WD repeat containing, antisen	0.883	0.540	0.456	2e-77
242020161	505	WD-repeat protein, putative [Pediculus h	0.874	0.578	0.453	2e-72
156380903	373	predicted protein [Nematostella vectensi	0.892	0.798	0.453	3e-72
327291454	534	PREDICTED: telomerase Cajal body protein	0.868	0.543	0.47	1e-71
196012872	422	hypothetical protein TRIADDRAFT_60247 [T	0.871	0.689	0.468	1e-71
365733579	534	WD repeat containing, antisense to TP53	0.868	0.543	0.468	1e-71
21450205	532	telomerase Cajal body protein 1 [Mus mus	0.850	0.533	0.459	8e-71
410906799	545	PREDICTED: telomerase Cajal body protein	0.913	0.559	0.453	2e-70
56090365	532	telomerase Cajal body protein 1 [Rattus	0.862	0.541	0.461	2e-70
431894021	523	Telomerase Cajal body protein 1 [Pteropu	0.847	0.541	0.459	3e-70

>gi|291239913|ref|XP_002739867.1| PREDICTED: WD repeat containing, antisense to TP53-like [Saccoglossus kowalevskii]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 138/302 (45%), Positives = 204/302 (67%), Gaps = 7/302 (2%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
           +PDG+C+LTNS+D+ LR F+LP E++        +  P++N  L + EG +IYDY WYP 
Sbjct: 196 SPDGSCILTNSDDDILRIFNLPGEMYEGKY----DDLPEMNAALSMAEGELIYDYCWYPM 251

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
            +S D  T   + S+   P+H+WD+  GE++ TY+ YN +DE+  A+SLAFSLDG K+Y 
Sbjct: 252 MTSTDPNTCCLVSSARDHPVHMWDAFTGELRCTYKAYNHLDEMATAHSLAFSLDGRKVYC 311

Query: 130 GFLSEVKIFSTDRPGRECVSR--NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
           GF   +++F+T+RPGR+C +R  + K   +  I+S IA++P   DI A G+YSK +G+++
Sbjct: 312 GFNKMIRVFTTERPGRDCETRPTHAKKMGQSGIISCIALSPQERDIYAAGSYSKSVGVYT 371

Query: 188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
           +  G  LF L+GH GG+THL+FS +G  L+SG R D EI+CWD+RNPG ++H   R+V+T
Sbjct: 372 EPRGELLFLLQGHQGGVTHLKFSPDGNRLYSGGRMDSEILCWDIRNPGVVVHRIVREVTT 431

Query: 248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
           NQRVYFD+ S   Y++SG+ NG + IW+ + S++ S    E V  P Y+F AH D  NGV
Sbjct: 432 NQRVYFDIDSSGKYVVSGSQNGSIIIWDTSISSV-SEDSREPVIYPAYRFCAHNDAVNGV 490

Query: 308 RW 309
            +
Sbjct: 491 SF 492

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|242020161|ref|XP_002430524.1| WD-repeat protein, putative [Pediculus humanus corporis] gi|212515688|gb|EEB17786.1| WD-repeat protein, putative [Pediculus humanus corporis]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 140/309 (45%), Positives = 204/309 (66%), Gaps = 17/309 (5%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
           +PDG CLL+NS+DN LR F+ P  L+       ++ +P     L++KEGG IYDY WYP 
Sbjct: 160 SPDGLCLLSNSDDNILRLFETPQNLNTFD----NDVKP----VLQMKEGGTIYDYEWYPL 211

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
            +S +  +     +S  +PIHLWD+  G ++ATY+P NQ DEVT AYS+AFS DG+KIY+
Sbjct: 212 MNSTNPISCVLASASQDSPIHLWDAYTGLLRATYQPINQFDEVTPAYSVAFSPDGSKIYS 271

Query: 130 GFLSEVKIFSTDRPGRECVSRNLK----PWFRKNIVSAIAINPVHPDICALGTYSKIIGL 185
           G+   ++IF T +PGR    R LK    P ++ NI S+I INP+   + A+G Y K +G+
Sbjct: 272 GYKKYLRIFDTAQPGRIFEERILKTKGNPVYQTNIASSICINPIVQSLYAVGCYDKTVGI 331

Query: 186 FSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245
           +S+ +G  LF LKGH+GG+T ++FS++G+ LFSG RKD EI+CWD+RNPG IL++  R V
Sbjct: 332 YSEPEGALLFILKGHSGGVTQVKFSTDGLYLFSGGRKDPEILCWDMRNPGKILYSMNRTV 391

Query: 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN 305
           +T Q++ FDL+    YL++G TN D     VN  NL + P E+++ EP+  +  H+DC N
Sbjct: 392 TTQQKIQFDLSPNGTYLITGTTNCD-----VNFYNLKNPPNEKNILEPIQVWRGHEDCVN 446

Query: 306 GVRWKHHKF 314
           GV +  ++ 
Sbjct: 447 GVHFHPNQL 455

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156380903|ref|XP_001632006.1| predicted protein [Nematostella vectensis] gi|156219056|gb|EDO39943.1| predicted protein [Nematostella vectensis]

 Score =  278 bits (710), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 137/302 (45%), Positives = 198/302 (65%), Gaps = 4/302 (1%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
           +PDG+CLLTNS+DN LR F+LPSEL+  ++   S+Q  +++  L ++EG  +YDY WYP 
Sbjct: 28  SPDGSCLLTNSDDNSLRIFNLPSELY--TIGADSSQLTEMSAVLHMQEGETVYDYCWYPY 85

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
            +S+D  T   L S    PIH+WD+  G+++ +Y+ ++ +DE+T A S++F+LDG+KIY+
Sbjct: 86  MTSMDPATCCLLSSCRDHPIHMWDAFTGKLRCSYKAFDNMDEITSATSVSFNLDGSKIYS 145

Query: 130 GFLSEVKIFSTDRPGRECVSRN--LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
           GF   V++F T+RPGREC  R   +K   +  ++S IA  P H  + ALG+YSK +G++S
Sbjct: 146 GFNKMVRVFDTNRPGRECEERPTVVKKNGQSGLISCIAFCPDHSGLYALGSYSKSVGIYS 205

Query: 188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
           DSDG  L  L+G  GG+TH+ FS +G  L+SG RKD EI+CWD+RNPG IL    R V+T
Sbjct: 206 DSDGELLCLLQGQVGGVTHVLFSPDGSKLYSGGRKDEEILCWDIRNPGVILCRLVRSVTT 265

Query: 248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
           NQR+YFDL     YL+SG  NG ++ W+     +      + +   L  F AH DC NGV
Sbjct: 266 NQRIYFDLDMSGRYLVSGGGNGTVTCWDTLAPPITDDVSPDPLLPQLVSFMAHGDCVNGV 325

Query: 308 RW 309
            +
Sbjct: 326 SF 327

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|327291454|ref|XP_003230436.1| PREDICTED: telomerase Cajal body protein 1-like, partial [Anolis carolinensis]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 141/300 (47%), Positives = 200/300 (66%), Gaps = 10/300 (3%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
           APDGTCLLTNS DN LR ++LP+EL+ +  W       +++  L++ EG  +YDY W+P 
Sbjct: 243 APDGTCLLTNSADNTLRIYNLPAELYSEE-W---GTVAEMSPVLRMAEGDTVYDYCWFPL 298

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
            +S D  T +   SS   PIH+WD+  G++KAT+RPYN +DE+T AY L+F+ DG++++ 
Sbjct: 299 MNSSDPQTCFVASSSRDNPIHIWDAFNGDLKATFRPYNHLDELTAAYCLSFTPDGSRLFC 358

Query: 130 GFLSEVKIFSTDRPGRECVSRN--LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
           GF   V++F+T RPGR C +R   +K   +  I+S IA +P  P + A  +Y+K +GL+S
Sbjct: 359 GFNKTVRVFNTSRPGRMCENRPTLVKKQGQSGIISCIAFSPTQP-LYACTSYAKTVGLYS 417

Query: 188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
             +G  L  L+GH GGITH  FS +G  LF+G RKD EI+CWDLR PG +L +  R V+T
Sbjct: 418 LEEGHALAVLQGHQGGITHALFSPDGNHLFTGGRKDAEILCWDLRQPGQVLFSVDRTVAT 477

Query: 248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
           NQR+YFDL S   +L+SGNT+G +SIW  +T+  PSS   + +  P+ +F A QDC NGV
Sbjct: 478 NQRLYFDLDSSGVFLVSGNTDGLVSIW--DTTQPPSS-DPQPLLHPVLQFQALQDCINGV 534

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|196012872|ref|XP_002116298.1| hypothetical protein TRIADDRAFT_60247 [Trichoplax adhaerens] gi|190581253|gb|EDV21331.1| hypothetical protein TRIADDRAFT_60247 [Trichoplax adhaerens]

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 143/305 (46%), Positives = 197/305 (64%), Gaps = 14/305 (4%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
           +PDG+CLLTN+NDN LR FDLP E +     +P    P L   L++ EG  IYDY WYPK
Sbjct: 72  SPDGSCLLTNANDNVLRVFDLPLEAY----EQPCLTLPDLTCALRMAEGETIYDYTWYPK 127

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
            SS D  T  FL +S   P+HLWD+  G+I+ +Y  +N +DE++ A+SLAFSL+G+ IY 
Sbjct: 128 MSSYDAATCCFLSTSRDHPLHLWDAYTGQIRCSYSCFNHLDELSPAHSLAFSLNGDLIYC 187

Query: 130 GFLSEVKIFSTDRPGRECVSRNLKPWF-----RKNIVSAIAINPVHPDICALGTYSKIIG 184
           G    V++F T RPGR+  +R   P F     +  I+S IA+NP H ++ A+G+YS+ +G
Sbjct: 188 GSKKSVRVFHTSRPGRDFENR---PTFVNKEGQSGIISCIAMNPYHTNLYAVGSYSRSVG 244

Query: 185 LFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ 244
           ++ +  G   F LKGH+GGITHL+FS +G  LF+G RKD EI+CWDLR PG +L +  RQ
Sbjct: 245 IYEEPSGYLCFQLKGHHGGITHLQFSLDGNRLFTGGRKDSEILCWDLRQPGVVLCSMTRQ 304

Query: 245 VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCT 304
           V TNQR+YFDL     YL SGN +G ++IW+   S    +  ++S    L +F AH+D  
Sbjct: 305 VLTNQRIYFDLDPSGRYLSSGNQDGTINIWDTTLS--AQNDEKDSPLPSLLQFVAHRDAV 362

Query: 305 NGVRW 309
           NGV +
Sbjct: 363 NGVSF 367

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|365733579|ref|NP_001242957.1| WD repeat containing, antisense to TP53 [Danio rerio]

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 141/301 (46%), Positives = 203/301 (67%), Gaps = 11/301 (3%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
           APDG+C+++NS DN LR ++LP+EL+  S W   +   +++  LK+ EG  IYDY W+PK
Sbjct: 169 APDGSCIVSNSADNVLRVYNLPAELY-SSQW---DLLSEMSPVLKMAEGDTIYDYCWFPK 224

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
            +S D  T +   SS   P+H+WD+  G+++A++RPYN +DE+T A+SL FS DG+++Y 
Sbjct: 225 MTSTDPDTCFIASSSRDNPVHIWDAFYGDLRASFRPYNHLDELTAAHSLCFSPDGSQLYC 284

Query: 130 GFLSEVKIFSTDRPGRECVSR--NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
           GF   V++F TDRPGR+C  R   +K   +  I+S IA +  H  + A G+YS+ +GL+S
Sbjct: 285 GFDKIVRVFHTDRPGRDCEQRPTMVKKRGQTGIISCIAFSQCH-SMYACGSYSRSVGLYS 343

Query: 188 DSDGRPLFFLKG-HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS 246
             DG  L  L   H+GG+THL FS NG  L++G RKD EI+CWDLR+PG +L +  R V+
Sbjct: 344 CDDGSLLALLPTRHHGGLTHLLFSPNGYHLYTGGRKDSEILCWDLRDPGQVLFSMQRNVN 403

Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG 306
           TNQR+YFDL     YLLSG+T+G +S+W+  T+ LP     E + +PL +F AH DCTNG
Sbjct: 404 TNQRIYFDLDQSGRYLLSGDTDGVVSVWDTLTA-LPDG--NEEILKPLLQFQAHTDCTNG 460

Query: 307 V 307
           +
Sbjct: 461 I 461

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|21450205|ref|NP_659073.1| telomerase Cajal body protein 1 [Mus musculus] gi|81915123|sp|Q8VC51.1|WAP53_MOUSE RecName: Full=Telomerase Cajal body protein 1; AltName: Full=WD repeat-containing protein 79; AltName: Full=WD40 repeat-containing protein encoded by RNA antisense to p53 gi|18255704|gb|AAH21790.1| WD repeat containing, antisense to TP53 [Mus musculus] gi|47124113|gb|AAH69868.1| Wrap53 protein [Mus musculus] gi|58864942|emb|CAI52013.1| WD repeat domain 79 [Mus musculus]

 Score =  273 bits (698), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 140/305 (45%), Positives = 198/305 (64%), Gaps = 21/305 (6%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYT-----LKIKEGGIIYDY 64
           APDG+C+LTNS DN LR ++LP EL+        +++ +++Y      L++ EG  IYDY
Sbjct: 162 APDGSCILTNSADNVLRIYNLPPELY--------SEQEQVDYAEMVPVLRMVEGDTIYDY 213

Query: 65  VWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG 124
            WY   SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG
Sbjct: 214 CWYSLMSSTQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDG 273

Query: 125 NKIYAGFLSEVKIFSTDRPGRECVSRN--LKPWFRKNIVSAIAINPVHPDICALGTYSKI 182
           ++++ GF   V++FST RPGR+C  R    K   +  I+S IA +P  P + A G+Y + 
Sbjct: 274 SQLFCGFNRTVRVFSTSRPGRDCEVRATFAKKQGQSGIISCIAFSPSQP-LYACGSYGRT 332

Query: 183 IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
           IGL++  DG PL  L GH GGITHL F  +G L FSGARKD E++CWDLR PG +L +  
Sbjct: 333 IGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLS 392

Query: 243 RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302
           R+V+TNQR+YFDL     +L+SGNT+G +S+W+++      +  ++S  EP+  F   +D
Sbjct: 393 REVTTNQRIYFDLDPSGQFLVSGNTSGVVSVWDIS-----GALSDDSKLEPVVTFLPQKD 447

Query: 303 CTNGV 307
           CTNGV
Sbjct: 448 CTNGV 452

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410906799|ref|XP_003966879.1| PREDICTED: telomerase Cajal body protein 1-like [Takifugu rubripes]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/322 (45%), Positives = 206/322 (63%), Gaps = 17/322 (5%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
           APDG+C+LTNS DN LR ++LP +++  + W   +  P+++  L++ EG  IYDY WYPK
Sbjct: 185 APDGSCILTNSADNVLRLYNLPPQIYSYN-W---DSLPEMSPALRMAEGDTIYDYCWYPK 240

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
            +S++  T +   SS   PIHLWD+  GE++A++RPYN +DE+T A SL F+ DG+++Y 
Sbjct: 241 MTSLEPETCFLASSSRDNPIHLWDAFYGEVRASFRPYNHLDELTAALSLCFTPDGSQLYC 300

Query: 130 GFLSEVKIFSTDRPGRECVSR--NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
           GF   V++F T+RPGR+C  R   +K   +  I+S +  +P    + A G+YS+  GL++
Sbjct: 301 GFDKTVRVFHTERPGRDCEERPTTVKKQGQGGIISCLGFSPCQ-SVYACGSYSRCTGLYA 359

Query: 188 DSDGRPLFFLKG-HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS 246
             DG  L  L   H+GG+THL FS +G  L++G RKD EI+CWDLR P  +L T  R V+
Sbjct: 360 CQDGTLLALLPTRHHGGLTHLLFSPDGNYLYTGGRKDSEILCWDLREPDNVLFTMKRNVA 419

Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG 306
           TNQR+YFDL +   YL+SG+T G +S+W+  T  LP    EE +Q P  +F AH DCTNG
Sbjct: 420 TNQRIYFDLDASGRYLISGDTEGVVSVWDTQT--LPPEASEELLQ-PQLRFQAHWDCTNG 476

Query: 307 VRWKHHKFERDLLVADATCSGQ 328
           V    H F   L    AT SGQ
Sbjct: 477 V--SVHPFMPLL----ATSSGQ 492

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|56090365|ref|NP_001007611.1| telomerase Cajal body protein 1 [Rattus norvegicus] gi|81910370|sp|Q5XII5.1|WAP53_RAT RecName: Full=Telomerase Cajal body protein 1; AltName: Full=WD repeat-containing protein 79; AltName: Full=WD40 repeat-containing protein encoded by RNA antisense to p53 gi|53733954|gb|AAH83696.1| WD repeat domain 79 [Rattus norvegicus] gi|149053053|gb|EDM04870.1| WD repeat domain 79, isoform CRA_b [Rattus norvegicus]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/301 (46%), Positives = 193/301 (64%), Gaps = 13/301 (4%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
           APDG+C+LTNS DN LR ++LP EL+ +S         ++   L++ EG  IYDY WY  
Sbjct: 162 APDGSCILTNSADNVLRIYNLPPELYSESE---QVDYAEMVPVLRMVEGDTIYDYCWYSL 218

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
            SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG++++ 
Sbjct: 219 MSSTQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFC 278

Query: 130 GFLSEVKIFSTDRPGRECVSRN--LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
           GF   V++FST RPGR+C  R    K   +  I+S +A +P  P + A G+Y + +GL++
Sbjct: 279 GFNRTVRVFSTSRPGRDCEVRTTFAKKQGQSGIISCLAFSPAQP-LYACGSYGRTLGLYA 337

Query: 188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
             DG PL  L GH GGITHL F  +G L FSGARKD E++CWDLR PG +L +  R+V+T
Sbjct: 338 WDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVTT 397

Query: 248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQ-EPLYKFSAHQDCTNG 306
           NQR+YFDL     +L+SGNT+G +S+W++      S  + +  Q EP+  F    DCTNG
Sbjct: 398 NQRIYFDLDPSGQFLVSGNTSGVVSVWDI------SGAFSDCKQLEPVMTFLPQDDCTNG 451

Query: 307 V 307
           V
Sbjct: 452 V 452

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|431894021|gb|ELK03827.1| Telomerase Cajal body protein 1 [Pteropus alecto]

 Score =  271 bits (693), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/305 (45%), Positives = 193/305 (63%), Gaps = 22/305 (7%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYT-----LKIKEGGIIYDY 64
           APDG+C+LTNS DN LR ++LP EL+        N+  +L Y      L++ EG  IYDY
Sbjct: 169 APDGSCILTNSADNILRIYNLPPELY--------NEGEQLEYAEMAPVLRMVEGDTIYDY 220

Query: 65  VWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG 124
            WY   SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG
Sbjct: 221 CWYSLMSSTQPETSYVASSSRENPIHIWDAFTGELQASFRAYNHLDELTAAHSLCFSPDG 280

Query: 125 NKIYAGFLSEVKIFSTDRPGRECVSRN--LKPWFRKNIVSAIAINPVHPDICALGTYSKI 182
           ++++ GF   V++FST RPGR+C  R    K   +  I+S IA +P  P + A G+YS+ 
Sbjct: 281 SQLFCGFNRTVRVFSTARPGRDCEVRATFAKKQGQSGIISCIAFSPAQP-LYACGSYSRS 339

Query: 183 IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
           +GL++  DG PL  L GH GGITHL F  +G   FSGARKD E++CWDLR PG +L +  
Sbjct: 340 LGLYAWDDGSPLALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQPGHLLWSLS 399

Query: 243 RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302
           R+V+TNQR+YFDL     +L+SG+T+G +S+W+ + +        E   EP+  F   +D
Sbjct: 400 REVTTNQRIYFDLDPTGQFLVSGSTSGAVSVWDTSRAG------HEGKPEPVLSFLPQKD 453

Query: 303 CTNGV 307
           CTNGV
Sbjct: 454 CTNGV 458

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
MGI|MGI:2384933	532	Wrap53 "WD repeat containing,	0.865	0.543	0.463	8e-69
RGD|1359624	532	Wrap53 "WD repeat containing,	0.862	0.541	0.461	8e-69
UNIPROTKB|Q60525	538	Wrap53 "Telomerase Cajal body	0.910	0.565	0.457	5.6e-68
UNIPROTKB|F1MJW9	540	WRAP53 "Telomerase Cajal body	0.907	0.561	0.451	1.9e-67
UNIPROTKB|Q3SWZ7	540	WRAP53 "Telomerase Cajal body	0.907	0.561	0.451	1.9e-67
UNIPROTKB|F1ST42	539	WRAP53 "Uncharacterized protei	0.907	0.562	0.442	1.3e-66
UNIPROTKB|Q9BUR4	548	WRAP53 "Telomerase Cajal body	0.907	0.552	0.445	5.8e-66
TAIR|locus:2119617	425	AT4G21520 "AT4G21520" [Arabido	0.859	0.675	0.355	1.7e-50
FB|FBgn0031782	543	WDR79 "WD repeat domain 79 hom	0.838	0.515	0.406	7.4e-50
POMBASE|SPCC1020.09	399	gnr1 "heterotrimeric G protein	0.781	0.654	0.299	2e-24

MGI|MGI:2384933 Wrap53 "WD repeat containing, antisense to TP53" [Mus musculus (taxid:10090)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 139/300 (46%), Positives = 195/300 (65%)

Query:    10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
             APDG+C+LTNS DN LR ++LP EL+ +   +      ++   L++ EG  IYDY WY  
Sbjct:   162 APDGSCILTNSADNVLRIYNLPPELYSE---QEQVDYAEMVPVLRMVEGDTIYDYCWYSL 218

Query:    70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
              SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG++++ 
Sbjct:   219 MSSTQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFC 278

Query:   130 GFLSEVKIFSTDRPGRECVSRNL--KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
             GF   V++FST RPGR+C  R    K   +  I+S IA +P  P + A G+Y + IGL++
Sbjct:   279 GFNRTVRVFSTSRPGRDCEVRATFAKKQGQSGIISCIAFSPSQP-LYACGSYGRTIGLYA 337

Query:   188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
               DG PL  L GH GGITHL F  +G L FSGARKD E++CWDLR PG +L +  R+V+T
Sbjct:   338 WDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVTT 397

Query:   248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
             NQR+YFDL     +L+SGNT+G +S+W+++      +  ++S  EP+  F   +DCTNGV
Sbjct:   398 NQRIYFDLDPSGQFLVSGNTSGVVSVWDIS-----GALSDDSKLEPVVTFLPQKDCTNGV 452

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005697 "telomerase holoenzyme complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0015030 "Cajal body" evidence=ISO

GO:0032203 "telomere formation via telomerase" evidence=ISO

GO:0051973 "positive regulation of telomerase activity" evidence=ISO

RGD|1359624 Wrap53 "WD repeat containing, antisense to TP53" [Rattus norvegicus (taxid:10116)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 139/301 (46%), Positives = 193/301 (64%)

Query:    10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
             APDG+C+LTNS DN LR ++LP EL+ +S         ++   L++ EG  IYDY WY  
Sbjct:   162 APDGSCILTNSADNVLRIYNLPPELYSES---EQVDYAEMVPVLRMVEGDTIYDYCWYSL 218

Query:    70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
              SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG++++ 
Sbjct:   219 MSSTQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFC 278

Query:   130 GFLSEVKIFSTDRPGRECVSRNL--KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
             GF   V++FST RPGR+C  R    K   +  I+S +A +P  P + A G+Y + +GL++
Sbjct:   279 GFNRTVRVFSTSRPGRDCEVRTTFAKKQGQSGIISCLAFSPAQP-LYACGSYGRTLGLYA 337

Query:   188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
               DG PL  L GH GGITHL F  +G L FSGARKD E++CWDLR PG +L +  R+V+T
Sbjct:   338 WDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVTT 397

Query:   248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQ-EPLYKFSAHQDCTNG 306
             NQR+YFDL     +L+SGNT+G +S+W++      S  + +  Q EP+  F    DCTNG
Sbjct:   398 NQRIYFDLDPSGQFLVSGNTSGVVSVWDI------SGAFSDCKQLEPVMTFLPQDDCTNG 451

Query:   307 V 307
             V
Sbjct:   452 V 452

GO:0003723 "RNA binding" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005697 "telomerase holoenzyme complex" evidence=ISO;ISS

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0015030 "Cajal body" evidence=ISO;ISS

GO:0032203 "telomere formation via telomerase" evidence=ISO;ISS

GO:0051973 "positive regulation of telomerase activity" evidence=ISO;ISS

UNIPROTKB|Q60525 Wrap53 "Telomerase Cajal body protein 1" [Mesocricetus auratus (taxid:10036)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 147/321 (45%), Positives = 200/321 (62%)

Query:    10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
             APDG+C+LTNS DN LR ++LP EL+  +         ++   L++ EG  IYDY WY  
Sbjct:   166 APDGSCILTNSADNTLRIYNLPPELYSAT---EQVDYAEMVPVLRMVEGDTIYDYCWYSL 222

Query:    70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
              SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG++++ 
Sbjct:   223 MSSSQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFC 282

Query:   130 GFLSEVKIFSTDRPGRECVSRNL--KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
             GF   V++FST RPGR+C  R    K   +  I+S IA +P  P + A G+Y + +GL++
Sbjct:   283 GFNRTVRVFSTSRPGRDCEVRATFAKKQGQSGIISCIAFSPSQP-LYACGSYGRTLGLYA 341

Query:   188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
               DG PL  L GH GGITHL F  +G L FSGARKD E++CWDLR PG +L +  R+V+T
Sbjct:   342 WDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVTT 401

Query:   248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
             NQR+YFDL     +L+SGNTNG +S+W+++ +   SS        P+  F   +DCTNGV
Sbjct:   402 NQRIYFDLDPSGQFLVSGNTNGMVSVWDISGAFGDSSKLG-----PVMTFLPQKDCTNGV 456

Query:   308 RWKHHKFERDLLVADATCSGQ 328
                H      LL   AT SGQ
Sbjct:   457 SL-HPSLP--LL---ATASGQ 471

GO:0003723 "RNA binding" evidence=ISS

GO:0005697 "telomerase holoenzyme complex" evidence=ISS

GO:0015030 "Cajal body" evidence=ISS

GO:0032203 "telomere formation via telomerase" evidence=ISS

GO:0051973 "positive regulation of telomerase activity" evidence=ISS

UNIPROTKB|F1MJW9 WRAP53 "Telomerase Cajal body protein 1" [Bos taurus (taxid:9913)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 145/321 (45%), Positives = 198/321 (61%)

Query:    10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
             APDG+C+LTNS DN LR ++LP EL+ +       +  ++   L++ EG  IYDY WY  
Sbjct:   169 APDGSCILTNSADNILRIYNLPPELYNEG---EQLEYAEMAPVLRMVEGDTIYDYCWYSL 225

Query:    70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
              SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG++++ 
Sbjct:   226 MSSAQPDTSYVASSSRENPIHIWDAFTGELRASFRSYNHLDELTAAHSLCFSPDGSQLFC 285

Query:   130 GFLSEVKIFSTDRPGRECVSRNL--KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
             GF   V++FST RPGR+C  R    K   +  I+S IA +P  P + A G+Y + +GL++
Sbjct:   286 GFNRTVRVFSTSRPGRDCEVRTTFAKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYT 344

Query:   188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
               DG PL  L GH GGITHL F  +G   FSGARKD E++CWDLR  G  L +  R+V+T
Sbjct:   345 WEDGSPLALLGGHQGGITHLCFHPDGNCFFSGARKDAELLCWDLRQLGHPLWSLSREVTT 404

Query:   248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
             NQR+YFDL     +L+SG+T+G +S+W+   + L S P      EP+  F   +DCTNGV
Sbjct:   405 NQRIYFDLDPTGQFLVSGSTSGAVSVWDTGGAGLESKP------EPVLSFQPQKDCTNGV 458

Query:   308 RWKHHKFERDLLVADATCSGQ 328
                H      LL   AT SGQ
Sbjct:   459 SL-HPSLP--LL---ATASGQ 473

GO:0051973 "positive regulation of telomerase activity" evidence=IEA

GO:0032203 "telomere formation via telomerase" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005697 "telomerase holoenzyme complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q3SWZ7 WRAP53 "Telomerase Cajal body protein 1" [Bos taurus (taxid:9913)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 145/321 (45%), Positives = 198/321 (61%)

Query:    10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
             APDG+C+LTNS DN LR ++LP EL+ +       +  ++   L++ EG  IYDY WY  
Sbjct:   169 APDGSCILTNSADNILRIYNLPPELYNEG---EQLEYAEMAPVLRMVEGDTIYDYCWYSL 225

Query:    70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
              SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG++++ 
Sbjct:   226 MSSAQPDTSYVASSSRENPIHIWDAFTGELRASFRSYNHLDELTAAHSLCFSPDGSQLFC 285

Query:   130 GFLSEVKIFSTDRPGRECVSRNL--KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
             GF   V++FST RPGR+C  R    K   +  I+S IA +P  P + A G+Y + +GL++
Sbjct:   286 GFNRTVRVFSTSRPGRDCEVRTTFAKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYT 344

Query:   188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
               DG PL  L GH GGITHL F  +G   FSGARKD E++CWDLR  G  L +  R+V+T
Sbjct:   345 WEDGSPLALLGGHQGGITHLCFHPDGNCFFSGARKDAELLCWDLRQLGHPLWSLSREVTT 404

Query:   248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
             NQR+YFDL     +L+SG+T+G +S+W+   + L S P      EP+  F   +DCTNGV
Sbjct:   405 NQRIYFDLDPTGQFLVSGSTSGAVSVWDTGGAGLESKP------EPVLSFQPQKDCTNGV 458

Query:   308 RWKHHKFERDLLVADATCSGQ 328
                H      LL   AT SGQ
Sbjct:   459 SL-HPSLP--LL---ATASGQ 473

GO:0015030 "Cajal body" evidence=ISS

GO:0032203 "telomere formation via telomerase" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0005697 "telomerase holoenzyme complex" evidence=ISS

GO:0051973 "positive regulation of telomerase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1ST42 WRAP53 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 142/321 (44%), Positives = 197/321 (61%)

Query:    10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
             APDG+C+LTNS DN LR ++LP EL+ +       +  ++   L++ EG  IYDY WY  
Sbjct:   169 APDGSCILTNSADNVLRIYNLPPELYSEG---EQLEYAEMAPVLRMMEGDTIYDYCWYSL 225

Query:    70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
              SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG++++ 
Sbjct:   226 MSSAQPDTSYVASSSRQNPIHIWDAFTGELRASFRSYNHLDELTAAHSLCFSPDGSQLFC 285

Query:   130 GFLSEVKIFSTDRPGRECVSRNL--KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
             GF   V++FST RPGR+C  R    K   +  I+S IA +P  P + A G+Y + +GL++
Sbjct:   286 GFNRTVRVFSTSRPGRDCEVRATFAKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYA 344

Query:   188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
               DG PL  L GH GG+THL F  +G   FSGARKD E++CWDLR P   L +  R+V+T
Sbjct:   345 WDDGSPLALLGGHQGGVTHLCFHPDGNRFFSGARKDAELLCWDLRQPANPLWSLSREVTT 404

Query:   248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
             NQR+YFDL     +L+SG+T+G +S+W+ + +     P      EP+  F   +DCTNGV
Sbjct:   405 NQRIYFDLDPTGQFLVSGSTSGAVSVWDTSGAGHEGKP------EPVLSFLPQKDCTNGV 458

Query:   308 RWKHHKFERDLLVADATCSGQ 328
                H      LL   AT SGQ
Sbjct:   459 SL-HPSLP--LL---ATASGQ 473

GO:0051973 "positive regulation of telomerase activity" evidence=IEA

GO:0032203 "telomere formation via telomerase" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005697 "telomerase holoenzyme complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q9BUR4 WRAP53 "Telomerase Cajal body protein 1" [Homo sapiens (taxid:9606)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 143/321 (44%), Positives = 197/321 (61%)

Query:    10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
             APDG+C+LTNS DN LR ++LP EL+ +       +  ++   L++ EG  IYDY WY  
Sbjct:   178 APDGSCILTNSADNILRIYNLPPELYHEG---EQVEYAEMVPVLRMVEGDTIYDYCWYSL 234

Query:    70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
              SS    TSY   SS   PIH+WD+  GE++A++R YN +DE+T A+SL FS DG++++ 
Sbjct:   235 MSSAQPDTSYVASSSRENPIHIWDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFC 294

Query:   130 GFLSEVKIFSTDRPGRECVSRNL--KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS 187
             GF   V++FST RPGR+C  R    K   +  I+S IA +P  P + A G+Y + +GL++
Sbjct:   295 GFNRTVRVFSTARPGRDCEVRATFAKKQGQSGIISCIAFSPAQP-LYACGSYGRSLGLYA 353

Query:   188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
               DG PL  L GH GGITHL F  +G   FSGARKD E++CWDLR  G  L +  R+V+T
Sbjct:   354 WDDGSPLALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVTT 413

Query:   248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
             NQR+YFDL     +L+SG+T+G +S+W+ +       P  +   EP+  F   +DCTNGV
Sbjct:   414 NQRIYFDLDPTGQFLVSGSTSGAVSVWDTD------GPGNDGKPEPVLSFLPQKDCTNGV 467

Query:   308 RWKHHKFERDLLVADATCSGQ 328
                H      LL   AT SGQ
Sbjct:   468 SL-HPSLP--LL---ATASGQ 482

GO:0005515 "protein binding" evidence=IPI

GO:0051973 "positive regulation of telomerase activity" evidence=IDA

GO:0005697 "telomerase holoenzyme complex" evidence=IDA

GO:0015030 "Cajal body" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0032203 "telomere formation via telomerase" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2119617 AT4G21520 "AT4G21520" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 106/298 (35%), Positives = 174/298 (58%)

Query:    10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWR-PSNQRPKLNYTLKIKEGGIIYDYVWYP 68
             +PDG+C L +S DN L  F LP +    + +  P  +      +L + EG  +YD+ WYP
Sbjct:    60 SPDGSCFLASSEDNTLSLFHLPQDGGDSNGYGVPVPEEDSYGASLLVNEGESVYDFCWYP 119

Query:    69 KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY 128
               S  D  T  F  S+   PIHLWDS  GE++ TYR Y+ +DE+T A+S+ F+ DG KI+
Sbjct:   120 YMSVSDPLTCVFATSTRDHPIHLWDSTSGELRCTYRAYDAMDEITAAFSVGFNPDGTKIF 179

Query:   129 AGFLSEVKIFSTDRPGRE-----CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKII 183
             AG+ S +++F   RPGR+      + +N +   +  I+S +A +P +  + A+G+Y +  
Sbjct:   180 AGYNSSIRVFDLHRPGRDFRQYSTLQKNKEG--QAGILSTLAFSPTNSGMLAVGSYGQTT 237

Query:   184 GLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR 243
             G++ + +   L+ L G  GG+TH++FS +G  L++G RKD  I+CWD+R    I++   R
Sbjct:   238 GIYREDNMELLYVLHGQEGGVTHVQFSKDGNYLYTGGRKDPYILCWDIRKSVEIVYKLYR 297

Query:   244 QV-STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH 300
                +TNQRV+FD+  C  +L +G  +G + ++++ T N  S  Y+ +  + +  FS H
Sbjct:   298 ATENTNQRVFFDIEPCGRHLGTGGQDGLVHMYDLQTGNWVSG-YQ-AASDTVNAFSFH 353

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

FB|FBgn0031782 WDR79 "WD repeat domain 79 homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 124/305 (40%), Positives = 166/305 (54%)

Query:    10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
             +PDGTCLL   + + +   ++PS+L+     +P+    KL   + + EGG +YD VWYP 
Sbjct:   191 SPDGTCLLVPVHLDGMHVIEMPSDLYSADTVQPARSLTKLQSEVHVPEGGTVYDCVWYPH 250

Query:    70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
              +S+   T  +L +  + PIH+WD+  G ++ +Y  Y+ VDEV  A SLAFS DG +IYA
Sbjct:   251 MNSLQPETCLWLATRQHEPIHMWDAFDGSLRCSYSGYDAVDEVMAAISLAFSHDGEQIYA 310

Query:   130 GFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLF--- 186
             G+   +KIF T RPGR C    +K  F    +S IA    HP     G +   I  F   
Sbjct:   311 GYKRCIKIFDTSRPGRFCDDYPVK--FA---ISCIAQTTAHPHTLTCGNWHGYIQHFDLR 365

Query:   187 -SDSDGRPLFFLKGHNGGITHL---EFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
              S   G PLF L GH GGIT L   EF +    LFSGARK  +I+ WD+RN    L    
Sbjct:   366 CSHKQG-PLFTLGGHKGGITQLRYGEFGNGEWHLFSGARKCDKILQWDMRNYKQPLVELQ 424

Query:   243 RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302
             R V TNQR+ FDL S SN+L SG+T G +++W++     PS         PL     H D
Sbjct:   425 RHVDTNQRIQFDLASDSNWLASGDTRGFVNVWDLKKYGDPSVL-------PL-----HSD 472

Query:   303 CTNGV 307
             C NGV
Sbjct:   473 CCNGV 477

GO:0019001 "guanyl nucleotide binding" evidence=ISS

GO:0034512 "box C/D snoRNA binding" evidence=IDA

POMBASE|SPCC1020.09 gnr1 "heterotrimeric G protein beta subunit Gnr1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 83/277 (29%), Positives = 137/277 (49%)

Query:    10 APDGTCLLTNSNDNHLRTFDLP-SELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYP 68
             +PDG+ +L+ + D  L  +++P S+L  K    P N    L+Y  +  E   +Y Y WY 
Sbjct:    55 SPDGSTILSLTEDQCLNCWNVPFSDLS-KKADGPLNFSKHLSYKYQSPE--TVYSYSWYS 111

Query:    69 KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY 128
             +    D  ++ F  SS   PI L +   G+ KA+Y   +  +    ++ L F+ DG  + 
Sbjct:   112 RMKLDDPSSNLFAVSSRDQPIKLINFTTGKNKASYHMIDHQERYQGSHCLQFTNDGEYLI 171

Query:   129 AGFLSEVKIFST----DRPGRECVSRNLK-P-W-FR-KNIVSAIAINPVHPDICALGTYS 180
             AG  + +  F+       P    V+   K P W F  K I S  ++NP+     A+GTYS
Sbjct:   172 AGDKNCLHHFNIRTGCKEPVMTTVTHGYKVPLWEFSLKGIQSCFSLNPMDSKTLAVGTYS 231

Query:   181 KIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238
               +G+++D   RP  L F      G+THL++  +G  L+ G+R   +I  WD+R    ++
Sbjct:   232 NRVGIYNDCGRRPCQLEFSIERGNGVTHLQWCEDGEKLYVGSRCSDKIEVWDIRYVRDMV 291

Query:   239 HTFP-RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW 274
             +     +  TNQR+ FD T   + +L+G T+G +  W
Sbjct:   292 YALEGHRGDTNQRILFD-TDKKDEILAGGTDGSIRRW 327

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=IPI

GO:0045744 "negative regulation of G-protein coupled receptor protein signaling pathway" evidence=IMP

GO:0090029 "negative regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion" evidence=IMP

GO:0004871 "signal transducer activity" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	334
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 69/305 (22%), Positives = 108/305 (35%), Gaps = 52/305 (17%)

Query: 7   VDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVW 66
           V  +PDG  L T S D  ++            VW           TLK   G +  D   
Sbjct: 15  VAFSPDGKLLATGSGDGTIK------------VWDLETGELL--RTLKGHTGPV-RDVAA 59

Query: 67  YPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK 126
                      +Y    S    I LWD   GE   T   +     V    S+AFS DG  
Sbjct: 60  SA-------DGTYLASGSSDKTIRLWDLETGECVRTLTGHTS--YV---SSVAFSPDGRI 107

Query: 127 IYAGFL-SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGL 185
           + +      +K++     G+   +         + V+++A +P    + +  +    I L
Sbjct: 108 LSSSSRDKTIKVWDV-ETGKCLTTLR----GHTDWVNSVAFSPDGTFVAS-SSQDGTIKL 161

Query: 186 FSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245
           +    G+ +  L GH G +  + FS +G  L S +  D  I  WDL    C+  T     
Sbjct: 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCL-GTLRGH- 218

Query: 246 STNQRVYFDLTSCSNYLL-SGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCT 304
                V     S   YLL SG+ +G + +W++ T             E +   S H +  
Sbjct: 219 --ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT------------GECVQTLSGHTNSV 264

Query: 305 NGVRW 309
             + W
Sbjct: 265 TSLAW 269

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.3 bits (147), Expect = 2e-10
 Identities = 50/239 (20%), Positives = 86/239 (35%), Gaps = 19/239 (7%)

Query: 72  SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF 131
           +        L  S    I LWD   G  +   +    + + + +     S DGN I    
Sbjct: 72  AFSPDGELLLSGSSDGTIKLWDLDNG--EKLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129

Query: 132 LSEVK-IFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD 190
            S    +   D      + R L+       V+++A +P    + +  +    I L+    
Sbjct: 130 SSLDGTVKLWDLSTPGKLIRTLEG--HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187

Query: 191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR 250
           G+PL  L GH   ++ L FS +G LL +    D  I  WDL     +  T          
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD---S 244

Query: 251 VYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
           V    +   + L SG+++G + +W++ +S+             L   S H      V +
Sbjct: 245 VVSSFSPDGSLLASGSSDGTIRLWDLRSSS-----------SLLRTLSGHSSSVLSVAF 292

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 74/302 (24%), Positives = 119/302 (39%), Gaps = 33/302 (10%)

Query: 6   DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYV 65
            +  +PDG  LL+ S+D  ++ +DL             +   KL  +L+      +    
Sbjct: 70  SIAFSPDGELLLSGSSDGTIKLWDL-------------DNGEKLIKSLEGLHDSSVSKLA 116

Query: 66  WYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN 125
                SS DG +     SS+   + LWD             +         SLAFS DG 
Sbjct: 117 L----SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS----ESVTSLAFSPDGK 168

Query: 126 KIYAG--FLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKII 183
            + +G      +K++                      VS++A +P    + A G+    I
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP-----VSSLAFSPDGGLLIASGSSDGTI 223

Query: 184 GLFSDSDGRPLFF-LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
            L+  S G+ L   L GH+  +    FS +G LL SG+  D  I  WDLR+   +L T  
Sbjct: 224 RLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSS-DGTIRLWDLRSSSSLLRTLS 281

Query: 243 RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302
              S+   V F        L SG+++G + +W++ T  L SS   +  + P+   S   D
Sbjct: 282 GHSSSVLSVAFS--PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339

Query: 303 CT 304
            +
Sbjct: 340 GS 341

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 39/199 (19%), Positives = 74/199 (37%), Gaps = 31/199 (15%)

Query: 116 YSLAFSLDGNKIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD 172
             +AFS DG  +  G  S    +K++  +        +      R   V+A A       
Sbjct: 13  TCVAFSPDGKLLATG--SGDGTIKVWDLETGELLRTLKGHTGPVRD--VAASADGTY--- 65

Query: 173 ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR 232
             A G+  K I L+    G  +  L GH   ++ + FS +G  + S + +D  I  WD+ 
Sbjct: 66  -LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVE 123

Query: 233 NPGCI--LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESV 290
              C+  L      V++        +    ++ S + +G + +W++ T            
Sbjct: 124 TGKCLTTLRGHTDWVNS-----VAFSPDGTFVASSSQDGTIKLWDLRT------------ 166

Query: 291 QEPLYKFSAHQDCTNGVRW 309
            + +   + H    N V +
Sbjct: 167 GKCVATLTGHTGEVNSVAF 185

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 17/145 (11%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-SEVKIF--STDRPGR 145
           I LWD   G+  AT   +    EV    S+AFS DG K+ +      +K++  ST +   
Sbjct: 159 IKLWDLRTGKCVATLTGHT--GEV---NSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213

Query: 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGIT 205
                        N V+++A +P    + A G+    I ++    G  +  L GH   +T
Sbjct: 214 TLRGHE-------NGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT 265

Query: 206 HLEFSSNGILLFSGARKDCEIICWD 230
            L +S +G  L SG+  D  I  WD
Sbjct: 266 SLAWSPDGKRLASGS-ADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 55/283 (19%), Positives = 107/283 (37%), Gaps = 39/283 (13%)

Query: 6   DVDEAPDGTCLLTNSN-DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDY 64
            +  +PDG  L + S+ D  ++ +DL +     ++   +                 +   
Sbjct: 160 SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT---------------DPVSSL 204

Query: 65  VWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG 124
            + P    +          S    I LWD   G++  +    +    V+     +FS DG
Sbjct: 205 AFSPDGGLL------IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-----SFSPDG 253

Query: 125 NKIYAGFL-SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKII 183
           + + +G     ++++   R     +            V ++A +P    + A G+    +
Sbjct: 254 SLLASGSSDGTIRLWDL-RSSSSLLRTLSGHSSS---VLSVAFSPDG-KLLASGSSDGTV 308

Query: 184 GLFSDSDGR--PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
            L+    G+      LKGH G ++ L FS +G LL SG   D  I  WDLR    +    
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Query: 242 PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSS 284
                 +       +     + SG+T+G + +W+++T +L  +
Sbjct: 369 GHSNVLS----VSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRN 407

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 22/132 (16%)

Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLT 256
           LKGH GG+T + FS +G LL +G+  D  I  WDL   G +L T   +  T        +
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSG-DGTIKVWDL-ETGELLRTL--KGHTGPVRDVAAS 60

Query: 257 SCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER 316
           +   YL SG+++  + +W++ T             E +   + H    + V +       
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETG------------ECVRTLTGHTSYVSSVAFSPD---G 105

Query: 317 DLLVA---DATC 325
            +L +   D T 
Sbjct: 106 RILSSSSRDKTI 117

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 190 DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD 230
            G  L  LKGH G +T + FS +G  L SG+  D  I  WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSD-DGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD 230
           G+ L  LKGH G +T + FS +G LL SG+  D  +  WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSD-DGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
KOG0272|consensus	459		100.0
KOG0271|consensus	480		100.0
KOG0271|consensus	480		100.0
KOG0286|consensus	343		100.0
KOG0265|consensus	338		100.0
KOG0272|consensus	459		100.0
KOG0273|consensus	524		100.0
KOG0279|consensus	315		100.0
KOG0284|consensus	464		100.0
KOG0263|consensus	707		100.0
KOG0295|consensus	406		100.0
KOG0315|consensus	311		100.0
KOG0645|consensus	312		100.0
KOG0266|consensus	456		100.0
KOG0293|consensus	519		100.0
KOG2919|consensus	406		100.0
KOG0316|consensus	307		100.0
KOG0279|consensus	315		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0273|consensus	524		100.0
KOG0315|consensus	311		100.0
KOG0282|consensus	503		100.0
KOG0285|consensus	460		100.0
KOG0291|consensus	893		100.0
KOG0318|consensus	603		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0276|consensus	794		100.0
KOG0286|consensus	343		100.0
KOG0296|consensus	399		100.0
KOG0281|consensus	499		100.0
KOG0318|consensus	603		100.0
KOG0263|consensus	707		100.0
KOG0319|consensus	775		100.0
KOG0284|consensus	464		100.0
KOG1407|consensus	313		100.0
KOG0291|consensus	893		100.0
KOG0275|consensus	508		100.0
KOG0277|consensus	311		100.0
KOG0313|consensus	423		100.0
KOG0266|consensus	456		100.0
KOG0295|consensus	406		100.0
KOG0319|consensus	775		100.0
KOG0285|consensus	460		100.0
KOG0278|consensus	334		100.0
KOG0643|consensus	327		100.0
KOG0772|consensus	641		100.0
KOG0283|consensus	712		100.0
KOG1446|consensus	311		100.0
KOG0292|consensus	1202		100.0
KOG0640|consensus	430		100.0
KOG0306|consensus	888		100.0
KOG0310|consensus	487		100.0
KOG0277|consensus	311		100.0
KOG0296|consensus	399		100.0
KOG0645|consensus	312		100.0
KOG0289|consensus	506		100.0
KOG0316|consensus	307		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0276|consensus	794		100.0
KOG0641|consensus	350		100.0
KOG0305|consensus	484		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PTZ00420	568	coronin; Provisional	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0292|consensus	1202		100.0
KOG0305|consensus	484		100.0
KOG0265|consensus	338		100.0
KOG0973|consensus	942		100.0
KOG0288|consensus	459		100.0
KOG0281|consensus	499		100.0
KOG0264|consensus	422		100.0
KOG0293|consensus	519		100.0
KOG0268|consensus	433		100.0
KOG0282|consensus	503		100.0
KOG0274|consensus	537		100.0
KOG0647|consensus	347		100.0
KOG0306|consensus	888		100.0
KOG0299|consensus	479		100.0
KOG1036|consensus	323		99.98
KOG0275|consensus	508		99.98
KOG1446|consensus	311		99.98
PTZ00421	493	coronin; Provisional	99.97
KOG2096|consensus	420		99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0308|consensus	735		99.97
KOG1408|consensus	1080		99.97
KOG0310|consensus	487		99.97
KOG1332|consensus	299		99.97
KOG0283|consensus	712		99.97
KOG1274|consensus	933		99.97
KOG0772|consensus	641		99.97
KOG0639|consensus	705		99.97
KOG1407|consensus	313		99.97
KOG0269|consensus	839		99.97
KOG0313|consensus	423		99.97
KOG1273|consensus	405		99.97
KOG4283|consensus	397		99.97
KOG0294|consensus	362		99.97
KOG0274|consensus	537		99.97
KOG0973|consensus	942		99.97
KOG0308|consensus	735		99.97
KOG2048|consensus	691		99.97
KOG0643|consensus	327		99.97
KOG0288|consensus	459		99.97
KOG0640|consensus	430		99.97
KOG0301|consensus	745		99.96
KOG0264|consensus	422		99.96
KOG0294|consensus	362		99.96
KOG0278|consensus	334		99.96
KOG0300|consensus	481		99.96
KOG0641|consensus	350		99.96
KOG0289|consensus	506		99.96
KOG2055|consensus	514		99.96
KOG0646|consensus	476		99.96
KOG0267|consensus	825		99.96
KOG0269|consensus	839		99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG0650|consensus	733		99.95
KOG2106|consensus	626		99.95
KOG0639|consensus	705		99.95
KOG1539|consensus	910		99.95
KOG0321|consensus	720		99.95
KOG2445|consensus	361		99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG0647|consensus	347		99.95
KOG1332|consensus	299		99.95
KOG0299|consensus	479		99.95
KOG4328|consensus	498		99.95
KOG2106|consensus	626		99.95
KOG0646|consensus	476		99.95
KOG0270|consensus	463		99.94
KOG0268|consensus	433		99.94
KOG1007|consensus	370		99.94
KOG2055|consensus	514		99.94
KOG0300|consensus	481		99.94
KOG1063|consensus	764		99.94
KOG0267|consensus	825		99.94
KOG0302|consensus	440		99.94
KOG1408|consensus	1080		99.94
KOG0307|consensus	1049		99.94
KOG4378|consensus	673		99.94
KOG1036|consensus	323		99.94
KOG0302|consensus	440		99.93
KOG1034|consensus	385		99.93
KOG1274|consensus	933		99.93
KOG0650|consensus	733		99.93
KOG2445|consensus	361		99.93
KOG2048|consensus	691		99.92
KOG0301|consensus	745		99.92
KOG1063|consensus	764		99.92
KOG4283|consensus	397		99.92
KOG1445|consensus	1012		99.92
KOG1009|consensus	434		99.92
KOG4227|consensus	609		99.92
KOG2110|consensus	391		99.92
KOG1188|consensus	376		99.92
KOG1538|consensus	1081		99.91
KOG0307|consensus	1049		99.91
KOG0270|consensus	463		99.91
KOG2096|consensus	420		99.91
KOG1007|consensus	370		99.91
KOG0290|consensus	364		99.91
KOG4378|consensus	673		99.9
KOG1539|consensus	910		99.9
KOG0321|consensus	720		99.9
KOG0322|consensus	323		99.9
PRK11028	330	6-phosphogluconolactonase; Provisional	99.9
KOG1034|consensus	385		99.9
PRK11028	330	6-phosphogluconolactonase; Provisional	99.89
KOG0649|consensus	325		99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG1517|consensus	1387		99.88
KOG1587|consensus	555		99.88
KOG1273|consensus	405		99.88
KOG1587|consensus	555		99.88
KOG4328|consensus	498		99.87
KOG2111|consensus	346		99.87
KOG1524|consensus	737		99.87
PRK01742	429	tolB translocation protein TolB; Provisional	99.87
KOG1523|consensus	361		99.87
KOG0303|consensus	472		99.86
KOG0290|consensus	364		99.86
KOG2139|consensus	445		99.86
KOG1538|consensus	1081		99.86
KOG2919|consensus	406		99.86
KOG1334|consensus	559		99.85
KOG0303|consensus	472		99.85
KOG0771|consensus	398		99.85
KOG0649|consensus	325		99.85
KOG1445|consensus	1012		99.84
KOG1310|consensus	758		99.84
KOG0771|consensus	398		99.84
KOG1354|consensus	433		99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG1272|consensus	545		99.84
KOG1240|consensus	1431		99.83
KOG1963|consensus	792		99.83
KOG0644|consensus	1113		99.82
KOG1524|consensus	737		99.82
KOG1009|consensus	434		99.82
KOG0642|consensus	577		99.82
KOG1272|consensus	545		99.82
KOG1963|consensus	792		99.82
KOG1188|consensus	376		99.82
PRK03629	429	tolB translocation protein TolB; Provisional	99.81
KOG1523|consensus	361		99.81
KOG0642|consensus	577		99.81
KOG4497|consensus	447		99.8
KOG2110|consensus	391		99.8
KOG1517|consensus	1387		99.79
PRK01742	429	tolB translocation protein TolB; Provisional	99.79
PRK02889	427	tolB translocation protein TolB; Provisional	99.79
KOG2394|consensus	636		99.78
KOG2321|consensus	703		99.77
KOG0322|consensus	323		99.77
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.77
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.77
PRK04922	433	tolB translocation protein TolB; Provisional	99.77
KOG2139|consensus	445		99.77
KOG2394|consensus	636		99.76
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.76
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.75
PRK03629	429	tolB translocation protein TolB; Provisional	99.75
PRK05137	435	tolB translocation protein TolB; Provisional	99.75
KOG0280|consensus	339		99.75
KOG1310|consensus	758		99.73
KOG4497|consensus	447		99.73
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.73
KOG4227|consensus	609		99.73
PRK02889	427	tolB translocation protein TolB; Provisional	99.73
KOG2111|consensus	346		99.73
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.72
KOG3881|consensus	412		99.72
PRK05137	435	tolB translocation protein TolB; Provisional	99.72
KOG3881|consensus	412		99.71
PRK04922	433	tolB translocation protein TolB; Provisional	99.7
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.69
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.69
PRK04792	448	tolB translocation protein TolB; Provisional	99.69
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.68
KOG2315|consensus	566		99.67
KOG2314|consensus	698		99.67
PRK00178	430	tolB translocation protein TolB; Provisional	99.66
KOG0644|consensus	1113		99.65
KOG4547|consensus	541		99.63
KOG2041|consensus	1189		99.62
PRK01029	428	tolB translocation protein TolB; Provisional	99.62
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.61
KOG0974|consensus	967		99.61
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.6
KOG0974|consensus	967		99.6
PRK04792	448	tolB translocation protein TolB; Provisional	99.59
PRK00178	430	tolB translocation protein TolB; Provisional	99.59
KOG1240|consensus	1431		99.59
KOG1334|consensus	559		99.58
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.56
KOG1064|consensus	2439		99.55
PRK01029	428	tolB translocation protein TolB; Provisional	99.55
KOG2315|consensus	566		99.55
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.55
KOG4547|consensus	541		99.54
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.52
KOG0280|consensus	339		99.52
KOG0309|consensus	1081		99.5
KOG1409|consensus	404		99.5
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.5
KOG1064|consensus	2439		99.49
KOG1354|consensus	433		99.48
KOG1409|consensus	404		99.47
KOG2321|consensus	703		99.46
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.43
PRK04043	419	tolB translocation protein TolB; Provisional	99.42
KOG4532|consensus	344		99.42
COG4946	668	Uncharacterized protein related to the periplasmic	99.39
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.37
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.37
PRK04043	419	tolB translocation protein TolB; Provisional	99.36
KOG2314|consensus	698		99.35
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.35
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.34
COG4946	668	Uncharacterized protein related to the periplasmic	99.33
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.33
KOG3914|consensus	390		99.32
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.28
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.28
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.26
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.25
KOG4190|consensus	1034		99.25
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.25
KOG2695|consensus	425		99.24
KOG3914|consensus	390		99.23
KOG2041|consensus	1189		99.21
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.2
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.2
KOG4532|consensus	344		99.19
KOG4714|consensus	319		99.14
KOG1912|consensus	1062		99.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.11
KOG1912|consensus	1062		99.08
KOG4714|consensus	319		99.08
KOG0309|consensus	1081		99.08
KOG1832|consensus	1516		99.06
KOG4190|consensus	1034		99.04
KOG0882|consensus	558		99.03
KOG2066|consensus	846		98.98
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.97
KOG2114|consensus	933		98.96
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.95
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.95
PRK02888	635	nitrous-oxide reductase; Validated	98.94
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.92
KOG1920|consensus	1265		98.92
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.9
KOG2695|consensus	425		98.89
KOG1832|consensus	1516		98.84
KOG1275|consensus	1118		98.84
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.84
KOG2114|consensus	933		98.82
KOG1008|consensus	783		98.81
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.74
KOG2066|consensus	846		98.72
KOG3617|consensus	1416		98.71
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.7
KOG1275|consensus	1118		98.7
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.7
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.68
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.67
KOG1645|consensus	463		98.63
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.62
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.62
KOG1008|consensus	783		98.61
KOG3621|consensus	726		98.6
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.58
COG3391	381	Uncharacterized conserved protein [Function unknow	98.56
COG3391	381	Uncharacterized conserved protein [Function unknow	98.52
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.51
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.49
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.49
KOG1645|consensus	463		98.48
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.48
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.47
KOG4649|consensus	354		98.47
KOG3617|consensus	1416		98.46
KOG1920|consensus	1265		98.44
PRK02888	635	nitrous-oxide reductase; Validated	98.44
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.43
KOG0882|consensus	558		98.42
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.42
KOG3621|consensus	726		98.41
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.41
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.4
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.36
KOG4649|consensus	354		98.33
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.31
KOG2395|consensus	644		98.29
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.21
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.16
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.16
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.11
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.09
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.09
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	98.09
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.08
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.03
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.99
KOG4640|consensus	665		97.94
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.94
PRK13616	591	lipoprotein LpqB; Provisional	97.92
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.92
PRK13616	591	lipoprotein LpqB; Provisional	97.91
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.9
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.88
KOG4640|consensus	665		97.88
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.82
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.8
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.79
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.77
KOG2395|consensus	644		97.73
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.72
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.68
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.62
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.51
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.5
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.49
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.44
KOG1897|consensus	1096		97.42
PHA02713	557	hypothetical protein; Provisional	97.42
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.4
KOG2079|consensus	1206		97.36
COG5167	776	VID27 Protein involved in vacuole import and degra	97.34
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.33
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.33
KOG2079|consensus	1206		97.3
KOG4441|consensus	571		97.29
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.2
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.19
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.18
KOG4441|consensus	571		97.17
KOG2444|consensus	238		97.16
KOG1897|consensus	1096		97.15
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.15
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.13
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.13
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	97.13
KOG3630|consensus	1405		97.0
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.95
PHA02713	557	hypothetical protein; Provisional	96.95
PRK10115	686	protease 2; Provisional	96.94
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.86
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.8
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.77
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.74
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.68
KOG3630|consensus	1405		96.66
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.66
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.64
PRK13684	334	Ycf48-like protein; Provisional	96.61
PHA03098	534	kelch-like protein; Provisional	96.6
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.56
KOG2444|consensus	238		96.52
KOG2247|consensus	615		96.43
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.41
KOG4499|consensus	310		96.28
PRK10115	686	protease 2; Provisional	96.11
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.09
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.09
KOG2377|consensus	657		96.07
PHA03098	534	kelch-like protein; Provisional	96.04
KOG2377|consensus	657		96.04
KOG1898|consensus	1205		95.92
KOG2247|consensus	615		95.86
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.84
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.83
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.83
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.8
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.78
KOG4499|consensus	310		95.72
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.72
KOG1916|consensus	1283		95.67
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.65
KOG2280|consensus	829		95.45
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.38
KOG2280|consensus	829		95.38
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.35
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.34
COG5167	776	VID27 Protein involved in vacuole import and degra	95.25
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.22
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.92
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.91
KOG4460|consensus	741		94.76
KOG1916|consensus	1283		94.66
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.59
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	94.53
KOG1900|consensus	1311		94.41
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.4
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.39
KOG1900|consensus	1311		93.92
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.92
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.9
KOG1898|consensus	1205		93.87
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.75
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.72
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.51
COG4590	733	ABC-type uncharacterized transport system, permeas	93.47
PHA02790	480	Kelch-like protein; Provisional	93.39
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.31
PRK13684	334	Ycf48-like protein; Provisional	93.28
COG4590	733	ABC-type uncharacterized transport system, permeas	92.55
COG5276	370	Uncharacterized conserved protein [Function unknow	92.1
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.05
PHA02790	480	Kelch-like protein; Provisional	92.03
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.97
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	91.97
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.71
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	91.44
KOG4460|consensus	741		90.99
KOG1983|consensus	993		90.94
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.1
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.03
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	90.01
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	89.9
KOG3616|consensus	1636		89.84
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.67
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.57
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.45
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	89.15
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	88.78
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	88.48
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.18
PLN00033	398	photosystem II stability/assembly factor; Provisio	88.05
COG5308	1263	NUP170 Nuclear pore complex subunit [Intracellular	87.62
PLN02153	341	epithiospecifier protein	86.87
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	86.25
KOG3522|consensus	925		86.13
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	86.06
KOG1896|consensus	1366		85.57
COG5276	370	Uncharacterized conserved protein [Function unknow	84.78
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	84.56
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.4
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	84.22

>KOG0272|consensus

Probab=100.00  E-value=1.5e-52  Score=329.43  Aligned_cols=279  Identities=20%  Similarity=0.213  Sum_probs=255.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .+|..+.||+|++.||||+.+|.++||+.......              .++.+ |...|.++.|+|.+     ++..+|
T Consensus       176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~--------------~~l~g-H~~~v~~~~fhP~~-----~~~~la  235 (459)
T KOG0272|consen  176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL--------------QTLRG-HTSRVGAAVFHPVD-----SDLNLA  235 (459)
T ss_pred             CcceeeEeecCCCeEEEeecCCceeEeecCCccee--------------EEEec-cccceeeEEEccCC-----Ccccee
Confidence            47889999999999999999999999999988765              46665 66889999998742     466899


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +|+.||++++|++.+...+..+..|..     .|..++|+|+|++|++++ |.+-++||+++ +..+.    ...+|...
T Consensus       236 t~s~Dgtvklw~~~~e~~l~~l~gH~~-----RVs~VafHPsG~~L~TasfD~tWRlWD~~t-k~ElL----~QEGHs~~  305 (459)
T KOG0272|consen  236 TASADGTVKLWKLSQETPLQDLEGHLA-----RVSRVAFHPSGKFLGTASFDSTWRLWDLET-KSELL----LQEGHSKG  305 (459)
T ss_pred             eeccCCceeeeccCCCcchhhhhcchh-----hheeeeecCCCceeeecccccchhhccccc-chhhH----hhcccccc
Confidence            999999999999988888999988776     899999999999999998 99999999998 44444    57899999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      |.+++|+|||. ++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+ .|++++|||++. ..++..
T Consensus       306 v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~-r~~ly~  382 (459)
T KOG0272|consen  306 VFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRM-RSELYT  382 (459)
T ss_pred             cceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-CCCcEEEeeecc-ccccee
Confidence            99999999999 999999999999999999999999999999999999999999999999 899999999998 677888


Q ss_pred             ecccccCCceEEEEecC-CCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccce
Q psy2305         241 FPRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLL  319 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~  319 (334)
                      +..|  ..-|..+.|+| .|.+|++++.|++++||...+.            .+++.+.+|++.|.++.+  +|++    
T Consensus       383 ipAH--~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~------------~~~ksLaGHe~kV~s~Di--s~d~----  442 (459)
T KOG0272|consen  383 IPAH--SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW------------SPLKSLAGHEGKVISLDI--SPDS----  442 (459)
T ss_pred             cccc--cchhhheEecccCCeEEEEcccCcceeeecCCCc------------ccchhhcCCccceEEEEe--ccCC----
Confidence            8887  66788899998 7899999999999999999997            899999999999999999  9999    


Q ss_pred             eeEEeeecceeeee
Q psy2305         320 VADATCSGQITNVK  333 (334)
Q Consensus       320 ~~l~t~~~d~~i~~  333 (334)
                      ++++|++.|++||-
T Consensus       443 ~~i~t~s~DRT~KL  456 (459)
T KOG0272|consen  443 QAIATSSFDRTIKL  456 (459)
T ss_pred             ceEEEeccCceeee
Confidence            99999999999973

>KOG0271|consensus

Probab=100.00  E-value=9.5e-52  Score=321.38  Aligned_cols=277  Identities=20%  Similarity=0.258  Sum_probs=247.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|.|++|+|+|++||+|+.|.++|+||+.+....              .+.. .|...|.+++|       +|||+.||
T Consensus       116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~--------------~t~K-gH~~WVlcvaw-------sPDgk~iA  173 (480)
T KOG0271|consen  116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL--------------FTCK-GHKNWVLCVAW-------SPDGKKIA  173 (480)
T ss_pred             CcEEEEEecCCCceEEecCCCceEEeeccCCCCcc--------------eeec-CCccEEEEEEE-------CCCcchhh
Confidence            57999999999999999999999999999998865              3444 46689999888       77999999


Q ss_pred             EeeCCCcEEEEeCCCCeee-EEEcCccccccccceeEEEEcC-----CCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIK-ATYRPYNQVDEVTHAYSLAFSL-----DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      +|+.||+|++||.++|+++ ..+.+|..     .|++++|.|     ..++|++++ ||.++|||+.. +..+.    .+
T Consensus       174 SG~~dg~I~lwdpktg~~~g~~l~gH~K-----~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-~~~~~----~l  243 (480)
T KOG0271|consen  174 SGSKDGSIRLWDPKTGQQIGRALRGHKK-----WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-GTCVR----TL  243 (480)
T ss_pred             ccccCCeEEEecCCCCCcccccccCccc-----ceeEEeecccccCCCccceecccCCCCEEEEEccC-ceEEE----Ee
Confidence            9999999999999998764 56776555     899999976     567889888 99999999985 45554    68


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEc-----------cCCc---------
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFS-----------SNGI---------  214 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~---------  214 (334)
                      .+|..+|+|+.|--+|  ++++|+.|++|++|+...|++.+.+++|...|+.++.+           |.++         
T Consensus       244 sgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~  321 (480)
T KOG0271|consen  244 SGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ  321 (480)
T ss_pred             ccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence            9999999999998776  89999999999999999999999999999999999876           3233         


Q ss_pred             ----------------EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         215 ----------------LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       215 ----------------~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                                      .|++|+ +|.++.+|+.....+++.+..+|  ..-+..+.||||++++|+++.|..|++|+-.+
T Consensus       322 ~~Al~rY~~~~~~~~erlVSgs-Dd~tlflW~p~~~kkpi~rmtgH--q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t  398 (480)
T KOG0271|consen  322 KKALERYEAVLKDSGERLVSGS-DDFTLFLWNPFKSKKPITRMTGH--QALVNHVSFSPDGRYIASASFDKSVKLWDGRT  398 (480)
T ss_pred             HHHHHHHHHhhccCcceeEEec-CCceEEEecccccccchhhhhch--hhheeeEEECCCccEEEEeecccceeeeeCCC
Confidence                            499999 89999999998767788888887  66788899999999999999999999999999


Q ss_pred             CCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         279 SNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |            +.+..|.+|-+.|+.++|  +.|.    ++|++||.|.++|+
T Consensus       399 G------------k~lasfRGHv~~VYqvaw--saDs----RLlVS~SkDsTLKv  435 (480)
T KOG0271|consen  399 G------------KFLASFRGHVAAVYQVAW--SADS----RLLVSGSKDSTLKV  435 (480)
T ss_pred             c------------chhhhhhhccceeEEEEe--ccCc----cEEEEcCCCceEEE
Confidence            9            889999999999999999  9999    99999999999986

>KOG0271|consensus

Probab=100.00  E-value=8.7e-51  Score=316.03  Aligned_cols=282  Identities=20%  Similarity=0.284  Sum_probs=253.1

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|.|++|+|||+.||+|+.||.|++||..+++...             ..+. .|...|.+++|.|  +-..|..++|++
T Consensus       159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g-------------~~l~-gH~K~It~Lawep--~hl~p~~r~las  222 (480)
T KOG0271|consen  159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG-------------RALR-GHKKWITALAWEP--LHLVPPCRRLAS  222 (480)
T ss_pred             EEEEEEECCCcchhhccccCCeEEEecCCCCCccc-------------cccc-CcccceeEEeecc--cccCCCccceec
Confidence            58999999999999999999999999999988752             3444 4668999999988  455788889999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      ++.||.++|||+..+.++..+.+|..     +|+|+.|--+| +|++|+ |++|++|+... +..+.    .+.+|...|
T Consensus       223 ~skDg~vrIWd~~~~~~~~~lsgHT~-----~VTCvrwGG~g-liySgS~DrtIkvw~a~d-G~~~r----~lkGHahwv  291 (480)
T KOG0271|consen  223 SSKDGSVRIWDTKLGTCVRTLSGHTA-----SVTCVRWGGEG-LIYSGSQDRTIKVWRALD-GKLCR----ELKGHAHWV  291 (480)
T ss_pred             ccCCCCEEEEEccCceEEEEeccCcc-----ceEEEEEcCCc-eEEecCCCceEEEEEccc-hhHHH----hhcccchhe
Confidence            99999999999999999999998766     99999998775 788888 99999999987 77777    789999999


Q ss_pred             EEEEEc-----------CCCC------------------------cEEEEeecCCeEEEEECCC-CCceEeeccCCCCeE
Q psy2305         162 SAIAIN-----------PVHP------------------------DICALGTYSKIIGLFSDSD-GRPLFFLKGHNGGIT  205 (334)
Q Consensus       162 ~~~~~~-----------~~~~------------------------~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~  205 (334)
                      +.++.+           |.++                        ..+++|++|.++++|+... .+++..+.+|..-|.
T Consensus       292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn  371 (480)
T KOG0271|consen  292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN  371 (480)
T ss_pred             eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee
Confidence            999877           2233                        1599999999999999754 468889999999999


Q ss_pred             EEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCC
Q psy2305         206 HLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP  285 (334)
Q Consensus       206 ~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  285 (334)
                      .+.||||++++++++ .|+.|++||.++ ++.+..|.+|  -..+..++|+.|.++|++|+.|.++++|++++.      
T Consensus       372 ~V~fSPd~r~IASaS-FDkSVkLW~g~t-Gk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk------  441 (480)
T KOG0271|consen  372 HVSFSPDGRYIASAS-FDKSVKLWDGRT-GKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK------  441 (480)
T ss_pred             eEEECCCccEEEEee-cccceeeeeCCC-cchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeee------
Confidence            999999999999999 999999999999 8989999988  567889999999999999999999999999998      


Q ss_pred             CccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         286 YEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                            +....+.+|.+.|..+.|  +|||    ..+++|+.|+.+++
T Consensus       442 ------Kl~~DLpGh~DEVf~vDw--spDG----~rV~sggkdkv~~l  477 (480)
T KOG0271|consen  442 ------KLKQDLPGHADEVFAVDW--SPDG----QRVASGGKDKVLRL  477 (480)
T ss_pred             ------eecccCCCCCceEEEEEe--cCCC----ceeecCCCceEEEe
Confidence                  788899999999999999  9999    99999999999876

>KOG0286|consensus

Probab=100.00  E-value=1.9e-45  Score=276.77  Aligned_cols=278  Identities=14%  Similarity=0.172  Sum_probs=244.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|.++.|++|.++|++++.||.+.|||..+....              +.+.. ....|..++|       +|.|+++|
T Consensus        56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~--------------haipl-~s~WVMtCA~-------sPSg~~VA  113 (343)
T KOG0286|consen   56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV--------------HAIPL-PSSWVMTCAY-------SPSGNFVA  113 (343)
T ss_pred             cceeeeEecCCcCeEEeeccCCeEEEEEcccccce--------------eEEec-CceeEEEEEE-------CCCCCeEE
Confidence            56999999999999999999999999998877655              22322 3356666555       78999999


Q ss_pred             EeeCCCcEEEEeCCCC------eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          82 CSSMYAPIHLWDSVGG------EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      +|+-|+...||++.+.      ...+.+..|..     .+.++.|.+|++ |++++ |.+..+||+++ ++...    .+
T Consensus       114 cGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg-----ylScC~f~dD~~-ilT~SGD~TCalWDie~-g~~~~----~f  182 (343)
T KOG0286|consen  114 CGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG-----YLSCCRFLDDNH-ILTGSGDMTCALWDIET-GQQTQ----VF  182 (343)
T ss_pred             ecCcCceeEEEecccccccccceeeeeecCccc-----eeEEEEEcCCCc-eEecCCCceEEEEEccc-ceEEE----Ee
Confidence            9999999999999754      23455666554     889999999765 55554 99999999998 66666    68


Q ss_pred             cccccceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         155 WFRKNIVSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       155 ~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      .+|.+.|.++.++| +++ .+++|+-|+..++||++.+.++++|.+|...|++++|.|+|.-+++|+ +|++.++||++.
T Consensus       183 ~GH~gDV~slsl~p~~~n-tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRa  260 (343)
T KOG0286|consen  183 HGHTGDVMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRA  260 (343)
T ss_pred             cCCcccEEEEecCCCCCC-eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC-CCceeEEEeecC
Confidence            99999999999999 677 999999999999999999999999999999999999999999999999 999999999998


Q ss_pred             CCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCC
Q psy2305         234 PGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHK  313 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~  313 (334)
                       .+.+..+........+.+++||..|++|++|..|.++.+||.-.+            +....+.+|++.|.++..  +|
T Consensus       261 -D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~------------e~vg~L~GHeNRvScl~~--s~  325 (343)
T KOG0286|consen  261 -DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG------------ERVGVLAGHENRVSCLGV--SP  325 (343)
T ss_pred             -CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc------------ceEEEeeccCCeeEEEEE--CC
Confidence             667778877666778999999999999999999999999999888            778899999999999999  99


Q ss_pred             CcccceeeEEeeecceeeee
Q psy2305         314 FERDLLVADATCSGQITNVK  333 (334)
Q Consensus       314 ~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ||    ..|+|||+|.+++|
T Consensus       326 DG----~av~TgSWDs~lri  341 (343)
T KOG0286|consen  326 DG----MAVATGSWDSTLRI  341 (343)
T ss_pred             CC----cEEEecchhHheee
Confidence            99    99999999999886

>KOG0265|consensus

Probab=100.00  E-value=3.7e-43  Score=265.32  Aligned_cols=279  Identities=19%  Similarity=0.302  Sum_probs=240.2

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|+.+.|+|+|.+||+|+.|..|.+|++.....-             ...+. .|.+.|..+.|       .+|++.|++
T Consensus        49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN-------------~~~lk-gHsgAVM~l~~-------~~d~s~i~S  107 (338)
T KOG0265|consen   49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN-------------FWVLK-GHSGAVMELHG-------MRDGSHILS  107 (338)
T ss_pred             eEEEEEECCCCCeEeecCCcceEEEEeccccccc-------------eeeec-cccceeEeeee-------ccCCCEEEE
Confidence            5899999999999999999999999997654332             02333 57789999988       679999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      ++.|.+++.||+++|+..+.++.|..     .|+.+.-+.-|..|+ +++ |+++++||+++  +...    .....+..
T Consensus       108 ~gtDk~v~~wD~~tG~~~rk~k~h~~-----~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~--k~~~----~t~~~kyq  176 (338)
T KOG0265|consen  108 CGTDKTVRGWDAETGKRIRKHKGHTS-----FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK--KEAI----KTFENKYQ  176 (338)
T ss_pred             ecCCceEEEEecccceeeehhccccc-----eeeecCccccCCeEEEecCCCceEEEEeecc--cchh----hcccccee
Confidence            99999999999999999999988665     788888666677777 556 89999999995  3222    23445678


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC---Ccc
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP---GCI  237 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~---~~~  237 (334)
                      ++++.|...+. .+.+|+-|+.|++||++.+.....+.+|..+|+.+..+|+|.++++-+ .|.++++||++..   ..+
T Consensus       177 ltAv~f~d~s~-qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md~tvrvwd~rp~~p~~R~  254 (338)
T KOG0265|consen  177 LTAVGFKDTSD-QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MDNTVRVWDVRPFAPSQRC  254 (338)
T ss_pred             EEEEEeccccc-ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-ccceEEEEEecccCCCCce
Confidence            99999999999 999999999999999999999999999999999999999999999999 9999999999852   233


Q ss_pred             ceeeccccc--CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         238 LHTFPRQVS--TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       238 ~~~~~~~~~--~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      +..+.++.+  ....+..+|+|++..+.+|+.|..+++||..+.            ..+..+++|.+.|+.+.|  +|..
T Consensus       255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r------------~~lyklpGh~gsvn~~~F--hp~e  320 (338)
T KOG0265|consen  255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR------------RILYKLPGHYGSVNEVDF--HPTE  320 (338)
T ss_pred             EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc------------cEEEEcCCcceeEEEeee--cCCC
Confidence            566666544  345667899999999999999999999999987            789999999999999999  9999


Q ss_pred             ccceeeEEeeecceeeee
Q psy2305         316 RDLLVADATCSGQITNVK  333 (334)
Q Consensus       316 ~~~~~~l~t~~~d~~i~~  333 (334)
                          ++|.+++.|++|+.
T Consensus       321 ----~iils~~sdk~i~l  334 (338)
T KOG0265|consen  321 ----PIILSCSSDKTIYL  334 (338)
T ss_pred             ----cEEEEeccCceeEe
Confidence                99999999999873

>KOG0272|consensus

Probab=100.00  E-value=1.4e-43  Score=279.08  Aligned_cols=237  Identities=16%  Similarity=0.215  Sum_probs=217.7

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC--CCEEEEee-CC
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LS  133 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~  133 (334)
                      ...+|..+.|       +.+++.|++|+.+|.+++|+..+...+..+.+|..     .|.++.|+|.  +..|++++ ||
T Consensus       174 d~rPis~~~f-------S~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~-----~v~~~~fhP~~~~~~lat~s~Dg  241 (459)
T KOG0272|consen  174 DTRPISGCSF-------SRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS-----RVGAAVFHPVDSDLNLATASADG  241 (459)
T ss_pred             CCCcceeeEe-------ecCCCeEEEeecCCceeEeecCCcceeEEEecccc-----ceeeEEEccCCCccceeeeccCC
Confidence            4456665555       78999999999999999999999999999998776     8999999997  56889888 99


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG  213 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  213 (334)
                      ++++|++.+ ..++.    .+.+|...|..++|+|+|+ +|++++.|.+-++||++++..+....||...|.+++|.|||
T Consensus       242 tvklw~~~~-e~~l~----~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG  315 (459)
T KOG0272|consen  242 TVKLWKLSQ-ETPLQ----DLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG  315 (459)
T ss_pred             ceeeeccCC-Ccchh----hhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCC
Confidence            999999996 45555    6899999999999999999 99999999999999999999888889999999999999999


Q ss_pred             cEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccc
Q psy2305         214 ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEP  293 (334)
Q Consensus       214 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  293 (334)
                      ..+++|+ .|..-+|||+++ +..+..+.+|  ...|..++|+|+|-.||+|+.|++++|||++..            ..
T Consensus       316 SL~~tGG-lD~~~RvWDlRt-gr~im~L~gH--~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r------------~~  379 (459)
T KOG0272|consen  316 SLAATGG-LDSLGRVWDLRT-GRCIMFLAGH--IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR------------SE  379 (459)
T ss_pred             ceeeccC-ccchhheeeccc-CcEEEEeccc--ccceeeEeECCCceEEeecCCCCcEEEeeeccc------------cc
Confidence            9999999 999999999999 8888889887  778999999999999999999999999999997            67


Q ss_pred             cceecccccccceeeeccCC-CcccceeeEEeeecceeeee
Q psy2305         294 LYKFSAHQDCTNGVRWKHHK-FERDLLVADATCSGQITNVK  333 (334)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~s~-~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +..+.+|.+-|+.|.|  +| .|    .+|+|+|.|+++++
T Consensus       380 ly~ipAH~nlVS~Vk~--~p~~g----~fL~TasyD~t~ki  414 (459)
T KOG0272|consen  380 LYTIPAHSNLVSQVKY--SPQEG----YFLVTASYDNTVKI  414 (459)
T ss_pred             ceecccccchhhheEe--cccCC----eEEEEcccCcceee
Confidence            8999999999999999  98 56    99999999999986

>KOG0273|consensus

Probab=100.00  E-value=5.3e-42  Score=273.63  Aligned_cols=274  Identities=19%  Similarity=0.314  Sum_probs=240.2

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      -|++++|+.+|..||+|+.||.++||+.......               ++ ..|.++|.++.|       +..|.+|++
T Consensus       237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~---------------tl-~~HkgPI~slKW-------nk~G~yilS  293 (524)
T KOG0273|consen  237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIS---------------TL-GQHKGPIFSLKW-------NKKGTYILS  293 (524)
T ss_pred             CcceEEecCCCCeEEEeecCcEEEEEecCchhhh---------------hh-hccCCceEEEEE-------cCCCCEEEe
Confidence            4899999999999999999999999998877653               33 347799999999       669999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      ++.|+++.+||..+++..+.+..+..     +...+.|-.+..+..++.|+.|+++.+.. ..+..    ++.+|.+.|.
T Consensus       294 ~~vD~ttilwd~~~g~~~q~f~~~s~-----~~lDVdW~~~~~F~ts~td~~i~V~kv~~-~~P~~----t~~GH~g~V~  363 (524)
T KOG0273|consen  294 GGVDGTTILWDAHTGTVKQQFEFHSA-----PALDVDWQSNDEFATSSTDGCIHVCKVGE-DRPVK----TFIGHHGEVN  363 (524)
T ss_pred             ccCCccEEEEeccCceEEEeeeeccC-----CccceEEecCceEeecCCCceEEEEEecC-CCcce----eeecccCceE
Confidence            99999999999999999998887654     44678888776554455599999999986 45555    6788999999


Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC---------cEEEeeecCCCeEEEEEccC
Q psy2305         163 AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG---------ILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~~d~~i~iwd~~~  233 (334)
                      ++.|+|.+. +|++++.|++++||.+........|.+|+..|+.+.|+|.|         ..|++++ .|+++++||+..
T Consensus       364 alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~lwdv~~  441 (524)
T KOG0273|consen  364 ALKWNPTGS-LLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVKLWDVES  441 (524)
T ss_pred             EEEECCCCc-eEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEEEEEccC
Confidence            999999999 99999999999999999999999999999999999999975         3788888 899999999998


Q ss_pred             CCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCC
Q psy2305         234 PGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHK  313 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~  313 (334)
                       +.++..|..|  ..+|.+++|+|+|+|+|+|+.||.|.+|+.+++            +..+.+.+ .+.|..++|  +.
T Consensus       442 -gv~i~~f~kH--~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~------------~l~~s~~~-~~~Ifel~W--n~  503 (524)
T KOG0273|consen  442 -GVPIHTLMKH--QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG------------KLVKSYQG-TGGIFELCW--NA  503 (524)
T ss_pred             -CceeEeeccC--CCceEEEEecCCCcEEEecCCCCeeEeccccch------------heeEeecC-CCeEEEEEE--cC
Confidence             8889999877  778999999999999999999999999999998            66666665 456999999  99


Q ss_pred             CcccceeeEEeeecceeeee
Q psy2305         314 FERDLLVADATCSGQITNVK  333 (334)
Q Consensus       314 ~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +|    .+|..+-.|+.++.
T Consensus       504 ~G----~kl~~~~sd~~vcv  519 (524)
T KOG0273|consen  504 AG----DKLGACASDGSVCV  519 (524)
T ss_pred             CC----CEEEEEecCCCceE
Confidence            99    99999988887753

>KOG0279|consensus

Probab=100.00  E-value=7.2e-41  Score=250.55  Aligned_cols=290  Identities=18%  Similarity=0.217  Sum_probs=231.4

Q ss_pred             CceeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      |.|..++..+. -..++++++|.++.+|++......         .....+.+.+ |...|..+.-       ++||++.
T Consensus        16 d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~---------~G~~~r~~~G-HsH~v~dv~~-------s~dg~~a   78 (315)
T KOG0279|consen   16 DWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK---------YGVPVRRLTG-HSHFVSDVVL-------SSDGNFA   78 (315)
T ss_pred             ceEEEEEeecCCCceEEEcccceEEEEEEeccCccc---------cCceeeeeec-cceEecceEE-------ccCCceE
Confidence            56888999886 458899999999999998765321         1112345665 6677877655       7899999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++++.|+.+++||+.+++..+.|.+|..     .|.+++|++|++.+++|+ |++|++|++..  .....+  .-..+..
T Consensus        79 lS~swD~~lrlWDl~~g~~t~~f~GH~~-----dVlsva~s~dn~qivSGSrDkTiklwnt~g--~ck~t~--~~~~~~~  149 (315)
T KOG0279|consen   79 LSASWDGTLRLWDLATGESTRRFVGHTK-----DVLSVAFSTDNRQIVSGSRDKTIKLWNTLG--VCKYTI--HEDSHRE  149 (315)
T ss_pred             EeccccceEEEEEecCCcEEEEEEecCC-----ceEEEEecCCCceeecCCCcceeeeeeecc--cEEEEE--ecCCCcC
Confidence            9999999999999999999999998776     899999999999999999 99999999984  443321  1223378


Q ss_pred             ceEEEEEcCC--CCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305         160 IVSAIAINPV--HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI  237 (334)
Q Consensus       160 ~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~  237 (334)
                      .|+|+.|+|+  .. +|++++.|++|++||+++-+....+.+|.+.++.+++||||..+++|+ .||.+.+||++. ++.
T Consensus       150 WVscvrfsP~~~~p-~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-kdg~~~LwdL~~-~k~  226 (315)
T KOG0279|consen  150 WVSCVRFSPNESNP-IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-KDGEAMLWDLNE-GKN  226 (315)
T ss_pred             cEEEEEEcCCCCCc-EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC-CCceEEEEEccC-Cce
Confidence            9999999999  56 999999999999999999999999999999999999999999999999 999999999998 666


Q ss_pred             ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccc
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~  317 (334)
                      +..+..   ...+.+++|+|+.-+|+.+. +..|+|||++++..+..-..+....   ..........+++|  ++||  
T Consensus       227 lysl~a---~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~---s~~~~~~~clslaw--s~dG--  295 (315)
T KOG0279|consen  227 LYSLEA---FDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP---SSKAGDPICLSLAW--SADG--  295 (315)
T ss_pred             eEeccC---CCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc---ccccCCcEEEEEEE--cCCC--
Confidence            666653   56788999999987777665 4569999999985441110000000   01111224577899  9999  


Q ss_pred             ceeeEEeeecceeeee
Q psy2305         318 LLVADATCSGQITNVK  333 (334)
Q Consensus       318 ~~~~l~t~~~d~~i~~  333 (334)
                        ..|+.+-.|+.|..
T Consensus       296 --~tLf~g~td~~irv  309 (315)
T KOG0279|consen  296 --QTLFAGYTDNVIRV  309 (315)
T ss_pred             --cEEEeeecCCcEEE
Confidence              99999999998875

>KOG0284|consensus

Probab=100.00  E-value=2.5e-43  Score=276.52  Aligned_cols=276  Identities=20%  Similarity=0.240  Sum_probs=238.0

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      +|..+.|.|+|+.|++|+..|.+.+|+......+               ++...|..+|.++.|       ++++.++++
T Consensus        98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE---------------tilQaHDs~Vr~m~w-------s~~g~wmiS  155 (464)
T KOG0284|consen   98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE---------------TILQAHDSPVRTMKW-------SHNGTWMIS  155 (464)
T ss_pred             ceeeEEEcCCCceeEeecccccEEEecCceeeHH---------------HHhhhhcccceeEEE-------ccCCCEEEE
Confidence            5889999999999999999999999998765554               444567899999888       779999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      |+.+|.|++|+.. ...++.++.+.. .   .|++++|+|+...+++++ ||+|+|||... .++..    .+.+|.-.|
T Consensus       156 gD~gG~iKyWqpn-mnnVk~~~ahh~-e---aIRdlafSpnDskF~t~SdDg~ikiWdf~~-~kee~----vL~GHgwdV  225 (464)
T KOG0284|consen  156 GDKGGMIKYWQPN-MNNVKIIQAHHA-E---AIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-PKEER----VLRGHGWDV  225 (464)
T ss_pred             cCCCceEEecccc-hhhhHHhhHhhh-h---hhheeccCCCCceeEEecCCCeEEEEeccC-Cchhh----eeccCCCCc
Confidence            9999999999974 334445554331 1   899999999888888887 99999999986 33333    478999999


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceee
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                      .+++|+|... ++++|+.|..|++||.+++.++.++.+|...|..+.|+|++++|++++ .|..++++|+++ -+.+..+
T Consensus       226 ksvdWHP~kg-LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~-mkEl~~~  302 (464)
T KOG0284|consen  226 KSVDWHPTKG-LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRT-MKELFTY  302 (464)
T ss_pred             ceeccCCccc-eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhH-hHHHHHh
Confidence            9999999998 999999999999999999999999999999999999999999999999 899999999996 6677888


Q ss_pred             cccccCCceEEEEecC-CCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccc-eecccccccceeeeccCCCcccce
Q psy2305         242 PRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY-KFSAHQDCTNGVRWKHHKFERDLL  319 (334)
Q Consensus       242 ~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~s~~~~~~~  319 (334)
                      .+|  ...+.++.|+| ...+|.+|+.||.|..|.+...            +++. .-.+|...|++++|  +|-|    
T Consensus       303 r~H--kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~------------~p~~~i~~AHd~~iwsl~~--hPlG----  362 (464)
T KOG0284|consen  303 RGH--KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE------------EPLGEIPPAHDGEIWSLAY--HPLG----  362 (464)
T ss_pred             hcc--hhhheeeccccccccceeeccCCCceEEEecccc------------ccccCCCcccccceeeeec--cccc----
Confidence            877  66788999999 4578889999999999999854            3443 34578899999999  9999    


Q ss_pred             eeEEeeecceeeee
Q psy2305         320 VADATCSGQITNVK  333 (334)
Q Consensus       320 ~~l~t~~~d~~i~~  333 (334)
                      .+|++|+.|.+++.
T Consensus       363 hil~tgsnd~t~rf  376 (464)
T KOG0284|consen  363 HILATGSNDRTVRF  376 (464)
T ss_pred             eeEeecCCCcceee
Confidence            99999999998864

>KOG0263|consensus

Probab=100.00  E-value=7.7e-42  Score=288.66  Aligned_cols=289  Identities=18%  Similarity=0.249  Sum_probs=237.3

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCcee-----eeeCC-----------CCCCCCcceeeeeeeceeEEEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCK-----SVWRP-----------SNQRPKLNYTLKIKEGGIIYDYVW   66 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~   66 (334)
                      .|.|..|++|+++||.|-.|..|++|.+...+...     .+...           .+.........-.+|.++|++..|
T Consensus       380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF  459 (707)
T KOG0263|consen  380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF  459 (707)
T ss_pred             cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence            58999999999999999999999999998533211     00000           111111222324457799999888


Q ss_pred             ecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCC
Q psy2305          67 YPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGR  145 (334)
Q Consensus        67 ~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~  145 (334)
                             +|+.++|++++.|+++++|.+.+...+..+++|..     +|+.+.|+|-|-++|+++ |++.++|.... ..
T Consensus       460 -------sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~-----PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~  526 (707)
T KOG0263|consen  460 -------SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA-----PVWDVQFAPRGYYFATASHDQTARLWSTDH-NK  526 (707)
T ss_pred             -------cccccceeeccCCcceeeeecccceeEEEecCCCc-----ceeeEEecCCceEEEecCCCceeeeeeccc-CC
Confidence                   77999999999999999999999999999998777     999999999999999998 99999999986 55


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCe
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCE  225 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~  225 (334)
                      +++    .+.+|-..|.|+.|+|+.. ++++|+.|.++++||+.+|..++.|.||.++|.+++|+|+|++|++|+ .|+.
T Consensus       527 PlR----ifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~-ed~~  600 (707)
T KOG0263|consen  527 PLR----IFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD-EDGL  600 (707)
T ss_pred             chh----hhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc-cCCc
Confidence            555    6899999999999999999 999999999999999999999999999999999999999999999999 9999


Q ss_pred             EEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCC-----CC-------CCccccccc
Q psy2305         226 IICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLP-----SS-------PYEESVQEP  293 (334)
Q Consensus       226 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~-------~~~~~~~~~  293 (334)
                      |.+||+.. +..+..+.+|  ...+.++.|+.+|..||+|+.|.+|++||+......     .+       +........
T Consensus       601 I~iWDl~~-~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  677 (707)
T KOG0263|consen  601 IKIWDLAN-GSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLL  677 (707)
T ss_pred             EEEEEcCC-Ccchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcce
Confidence            99999998 8888899988  778999999999999999999999999998764322     00       000011123


Q ss_pred             cceecccccccceeeeccCCCc
Q psy2305         294 LYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      +..+..-..+|..+.|  .-.+
T Consensus       678 lgs~~tK~tpv~~l~F--trrN  697 (707)
T KOG0263|consen  678 LGSFYTKNTPVVGLHF--TRRN  697 (707)
T ss_pred             eeeeeecCceEEEEEE--eccc
Confidence            4445544557888888  5444

>KOG0295|consensus

Probab=100.00  E-value=1.1e-41  Score=263.66  Aligned_cols=276  Identities=18%  Similarity=0.211  Sum_probs=250.3

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      +|+.+-|.|+-..+++++.|++|++||..+++..              ..+++|. ..+.++.|       +..|+++++
T Consensus       110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e--------------~~LrGHt-~sv~di~~-------~a~Gk~l~t  167 (406)
T KOG0295|consen  110 SVTRVIFHPSEALVVSASEDATIKVFDTETGELE--------------RSLRGHT-DSVFDISF-------DASGKYLAT  167 (406)
T ss_pred             ceeeeeeccCceEEEEecCCceEEEEEccchhhh--------------hhhhccc-cceeEEEE-------ecCccEEEe
Confidence            5888999999999999999999999999999976              5677655 44888777       778999999


Q ss_pred             eeCCCcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          83 SSMYAPIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        83 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      ++.|-.+++||..+ -++++...+|.|     .|.+++|-|.|.++++++ |.+|+.|++.+ +..+.    .+.+|...
T Consensus       168 cSsDl~~~LWd~~~~~~c~ks~~gh~h-----~vS~V~f~P~gd~ilS~srD~tik~We~~t-g~cv~----t~~~h~ew  237 (406)
T KOG0295|consen  168 CSSDLSAKLWDFDTFFRCIKSLIGHEH-----GVSSVFFLPLGDHILSCSRDNTIKAWECDT-GYCVK----TFPGHSEW  237 (406)
T ss_pred             cCCccchhheeHHHHHHHHHHhcCccc-----ceeeEEEEecCCeeeecccccceeEEeccc-ceeEE----eccCchHh
Confidence            99999999999876 456777777777     899999999999999998 99999999998 66666    68999999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccC---------------CcEEEeeecCCCe
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN---------------GILLFSGARKDCE  225 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~~d~~  225 (334)
                      |.-++.+.||. ++++++.|.+|++|-+.++++...+..|+.+|.+++|.|.               ++++.+++ .|++
T Consensus       238 vr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S-rDkt  315 (406)
T KOG0295|consen  238 VRMVRVNQDGT-IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS-RDKT  315 (406)
T ss_pred             EEEEEecCCee-EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-ccce
Confidence            99999999999 9999999999999999999999999999999999999763               35899999 7999


Q ss_pred             EEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccc
Q psy2305         226 IICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN  305 (334)
Q Consensus       226 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  305 (334)
                      |++||+.+ +.++.++.+|  ..++..++|+|.|+||+++.+|+++++||++.+            ++...+..|..-++
T Consensus       316 Ik~wdv~t-g~cL~tL~gh--dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~------------~cmk~~~ah~hfvt  380 (406)
T KOG0295|consen  316 IKIWDVST-GMCLFTLVGH--DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL------------QCMKTLEAHEHFVT  380 (406)
T ss_pred             EEEEeccC-CeEEEEEecc--cceeeeeEEcCCCeEEEEEecCCcEEEEEeccc------------eeeeccCCCcceeE
Confidence            99999999 8889999988  788999999999999999999999999999998            78888889999999


Q ss_pred             eeeeccCCCcccceeeEEeeecceeeee
Q psy2305         306 GVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       306 ~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ++.|  +.+.    .+++||+-|.++++
T Consensus       381 ~lDf--h~~~----p~VvTGsVdqt~Kv  402 (406)
T KOG0295|consen  381 SLDF--HKTA----PYVVTGSVDQTVKV  402 (406)
T ss_pred             EEec--CCCC----ceEEeccccceeee
Confidence            9999  9999    99999999998875

>KOG0315|consensus

Probab=100.00  E-value=5e-40  Score=242.33  Aligned_cols=265  Identities=16%  Similarity=0.211  Sum_probs=223.0

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEe
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWD   93 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd   93 (334)
                      -+|++++.|.+||+|...++...              .++. +....|+.+..       .|+++.||+++. ..|++||
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~--------------rTiq-h~dsqVNrLei-------Tpdk~~LAaa~~-qhvRlyD   67 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICS--------------RTIQ-HPDSQVNRLEI-------TPDKKDLAAAGN-QHVRLYD   67 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEE--------------EEEe-cCccceeeEEE-------cCCcchhhhccC-CeeEEEE
Confidence            48999999999999999999876              3443 44567877665       779999998875 4699999


Q ss_pred             CCCCee--eEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCC
Q psy2305          94 SVGGEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVH  170 (334)
Q Consensus        94 ~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  170 (334)
                      +.++..  +.++..+..     .|+.+.|..+|+.+++|+ ||+++|||++.  ..+.    ....|..+|+++..+|+.
T Consensus        68 ~~S~np~Pv~t~e~h~k-----NVtaVgF~~dgrWMyTgseDgt~kIWdlR~--~~~q----R~~~~~spVn~vvlhpnQ  136 (311)
T KOG0315|consen   68 LNSNNPNPVATFEGHTK-----NVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--LSCQ----RNYQHNSPVNTVVLHPNQ  136 (311)
T ss_pred             ccCCCCCceeEEeccCC-----ceEEEEEeecCeEEEecCCCceEEEEeccC--cccc----hhccCCCCcceEEecCCc
Confidence            988764  677777644     899999999999999998 99999999995  3333    356678999999999999


Q ss_pred             CcEEEEeecCCeEEEEECCCCCceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC-----Cccceeeccc
Q psy2305         171 PDICALGTYSKIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP-----GCILHTFPRQ  244 (334)
Q Consensus       171 ~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~-----~~~~~~~~~~  244 (334)
                      . .|++|..+|.|++||+.+..+...+ ......|.++...|||++|+.+. ..|..++|++-..     -.++.+++.|
T Consensus       137 t-eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah  214 (311)
T KOG0315|consen  137 T-ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAH  214 (311)
T ss_pred             c-eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecc
Confidence            8 9999999999999999888666655 33457899999999999999999 8999999999751     2344555555


Q ss_pred             ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEe
Q psy2305         245 VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADAT  324 (334)
Q Consensus       245 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t  324 (334)
                        ...++.+.+||++++|++++.|.+++||+.++.  .         +....+.+|...+++++|  |.|+    +||+|
T Consensus       215 --~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~---------kle~~l~gh~rWvWdc~F--S~dg----~YlvT  275 (311)
T KOG0315|consen  215 --NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--F---------KLELVLTGHQRWVWDCAF--SADG----EYLVT  275 (311)
T ss_pred             --cceEEEEEECCCCcEEEeecCCceEEEEecCCc--e---------eeEEEeecCCceEEeeee--ccCc----cEEEe
Confidence              677888899999999999999999999999886  1         566778999999999999  9999    99999


Q ss_pred             eecceeeee
Q psy2305         325 CSGQITNVK  333 (334)
Q Consensus       325 ~~~d~~i~~  333 (334)
                      |+.|+..++
T Consensus       276 assd~~~rl  284 (311)
T KOG0315|consen  276 ASSDHTARL  284 (311)
T ss_pred             cCCCCceee
Confidence            999987753

>KOG0645|consensus

Probab=100.00  E-value=3.3e-39  Score=240.76  Aligned_cols=285  Identities=20%  Similarity=0.218  Sum_probs=230.2

Q ss_pred             CceeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +.|+.++|+|- |..||+++.|..|++|+...+...           .+...+...|...|.+++|       +|.|++|
T Consensus        15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~-----------~ck~vld~~hkrsVRsvAw-------sp~g~~L   76 (312)
T KOG0645|consen   15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSW-----------TCKTVLDDGHKRSVRSVAW-------SPHGRYL   76 (312)
T ss_pred             CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcE-----------EEEEeccccchheeeeeee-------cCCCcEE
Confidence            56899999998 899999999999999999853321           1334566678899999888       6799999


Q ss_pred             EEeeCCCcEEEEeCCCC--eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGG--EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      ++++.|.++.||.-..+  +++..+++|..     .|.+++|+++|++||+++ |++|-||.+.. +....... .+.+|
T Consensus        77 a~aSFD~t~~Iw~k~~~efecv~~lEGHEn-----EVK~Vaws~sG~~LATCSRDKSVWiWe~de-ddEfec~a-VL~~H  149 (312)
T KOG0645|consen   77 ASASFDATVVIWKKEDGEFECVATLEGHEN-----EVKCVAWSASGNYLATCSRDKSVWIWEIDE-DDEFECIA-VLQEH  149 (312)
T ss_pred             EEeeccceEEEeecCCCceeEEeeeecccc-----ceeEEEEcCCCCEEEEeeCCCeEEEEEecC-CCcEEEEe-eeccc
Confidence            99999999999976544  56777887666     899999999999999998 99999999985 33333222 58999


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECC---CCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDS---DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP  234 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~  234 (334)
                      ...|..+.|+|... +|++++.|.+|++|+-.   .-.+.+++.+|...|.+++|+|.|..|++++ .|++++||.....
T Consensus       150 tqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s-dD~tv~Iw~~~~~  227 (312)
T KOG0645|consen  150 TQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS-DDGTVSIWRLYTD  227 (312)
T ss_pred             cccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec-CCcceEeeeeccC
Confidence            99999999999988 99999999999999876   2368999999999999999999999999999 8999999987631


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccc-ceecccccccceeeeccCC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL-YKFSAHQDCTNGVRWKHHK  313 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~s~  313 (334)
                            + ...+...+..+.|.  ...|++++.|+.|++|.-...     |+. ..++.+ ..-..|...|+++.|  .|
T Consensus       228 ------~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~-----~d~-p~~~l~~~~~~aHe~dVNsV~w--~p  290 (312)
T KOG0645|consen  228 ------L-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS-----PDE-PSWNLLAKKEGAHEVDVNSVQW--NP  290 (312)
T ss_pred             ------c-chhcccceEeeeec--ccceEeccCCCEEEEEEecCC-----CCC-chHHHHHhhhcccccccceEEE--cC
Confidence                  1 11234556667787  568999999999999987643     111 111222 244568889999999  99


Q ss_pred             CcccceeeEEeeecceeeee
Q psy2305         314 FERDLLVADATCSGQITNVK  333 (334)
Q Consensus       314 ~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ..+   .+|+++|+||.+++
T Consensus       291 ~~~---~~L~s~~DDG~v~~  307 (312)
T KOG0645|consen  291 KVS---NRLASGGDDGIVNF  307 (312)
T ss_pred             CCC---CceeecCCCceEEE
Confidence            632   78999999999875

>KOG0266|consensus

Probab=100.00  E-value=1e-39  Score=281.33  Aligned_cols=279  Identities=24%  Similarity=0.320  Sum_probs=242.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCC--ceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSEL--HCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      ..|.++.|+|+|++|++++.++.+++|+.....  ..              ..+ ..|...|.+++|       +|++++
T Consensus       160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~--------------~~l-~~h~~~v~~~~f-------s~d~~~  217 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLL--------------REL-SGHTRGVSDVAF-------SPDGSY  217 (456)
T ss_pred             CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhh--------------ccc-cccccceeeeEE-------CCCCcE
Confidence            468899999999999999999999999996665  22              233 356688988888       779999


Q ss_pred             EEEeeCCCcEEEEeC-CCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          80 FLCSSMYAPIHLWDS-VGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        80 l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +++++.|++|++||+ ..+..++.+.+|..     .|++++|+|+++++++|+ |++|++||+++ +....    .+.+|
T Consensus       218 l~s~s~D~tiriwd~~~~~~~~~~l~gH~~-----~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~~~~----~l~~h  287 (456)
T KOG0266|consen  218 LLSGSDDKTLRIWDLKDDGRNLKTLKGHST-----YVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GECVR----KLKGH  287 (456)
T ss_pred             EEEecCCceEEEeeccCCCeEEEEecCCCC-----ceEEEEecCCCCEEEEecCCCcEEEEeccC-CeEEE----eeecc
Confidence            999999999999999 55688899998665     899999999999999998 99999999997 56655    68999


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC--ceEeeccCCCC--eEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR--PLFFLKGHNGG--ITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      ...|++++|++++. +|++++.|+.|++||+.++.  +...+.++...  ++++.|+|++++|++++ .|+.+++||++.
T Consensus       288 s~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~  365 (456)
T KOG0266|consen  288 SDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRS  365 (456)
T ss_pred             CCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccC
Confidence            99999999999999 99999999999999999998  56777766655  99999999999999999 899999999998


Q ss_pred             CCccceeecccccC-CceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccc-ccccceeeecc
Q psy2305         234 PGCILHTFPRQVST-NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH-QDCTNGVRWKH  311 (334)
Q Consensus       234 ~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~  311 (334)
                       ......+..|... ..+.+...++.+.++++|+.|+.|++||+.++            ..+..+.+| ...+..+.|  
T Consensus       366 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~------------~~~~~l~~h~~~~~~~~~~--  430 (456)
T KOG0266|consen  366 -GKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG------------GILQRLEGHSKAAVSDLSS--  430 (456)
T ss_pred             -CcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc------------chhhhhcCCCCCceecccc--
Confidence             7777777777554 23445556889999999999999999999997            788889999 888999999  


Q ss_pred             CCCcccceeeEEeee--cceeeee
Q psy2305         312 HKFERDLLVADATCS--GQITNVK  333 (334)
Q Consensus       312 s~~~~~~~~~l~t~~--~d~~i~~  333 (334)
                      +|..    .++++++  .|+.+.+
T Consensus       431 ~~~~----~~~~s~s~~~d~~~~~  450 (456)
T KOG0266|consen  431 HPTE----NLIASSSFEGDGLIRL  450 (456)
T ss_pred             CCCc----CeeeecCcCCCceEEE
Confidence            9999    9999998  6777654

>KOG0293|consensus

Probab=100.00  E-value=1.2e-40  Score=262.03  Aligned_cols=282  Identities=20%  Similarity=0.221  Sum_probs=238.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      |.|+-+.||++|+|||+++.|.+..+|.+......           .+..++.+| ..+|.-+.|       |||.++|+
T Consensus       225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~-----------kl~~tlvgh-~~~V~yi~w-------SPDdryLl  285 (519)
T KOG0293|consen  225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF-----------KLKKTLVGH-SQPVSYIMW-------SPDDRYLL  285 (519)
T ss_pred             CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce-----------eeeeeeecc-cCceEEEEE-------CCCCCeEE
Confidence            67999999999999999999999999997654432           134566654 467877777       77999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc-cc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR-KN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~-~~  159 (334)
                      +|+.|..+.+||+.+|.....+... +..   .+.+++|.|||..+++|+ |+++..||++  +....    ...+. ..
T Consensus       286 aCg~~e~~~lwDv~tgd~~~~y~~~-~~~---S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD--gn~~~----~W~gvr~~  355 (519)
T KOG0293|consen  286 ACGFDEVLSLWDVDTGDLRHLYPSG-LGF---SVSSCAWCPDGFRFVTGSPDRTIIMWDLD--GNILG----NWEGVRDP  355 (519)
T ss_pred             ecCchHheeeccCCcchhhhhcccC-cCC---CcceeEEccCCceeEecCCCCcEEEecCC--cchhh----cccccccc
Confidence            9999999999999999988777643 212   789999999999999998 9999999998  55544    23333 24


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccce
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                      .|.+++..+||+ ++++.+.|..|++|+.++........ ...+|++++.|.+++++++.- .+..+.+||+.. ...+.
T Consensus       356 ~v~dlait~Dgk-~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL-~~qei~LWDl~e-~~lv~  431 (519)
T KOG0293|consen  356 KVHDLAITYDGK-YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL-QDQEIHLWDLEE-NKLVR  431 (519)
T ss_pred             eeEEEEEcCCCc-EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc-ccCeeEEeecch-hhHHH
Confidence            689999999999 88888899999999987765554444 456899999999999999988 899999999996 77888


Q ss_pred             eecccccCCceEEEEecC-CCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305         240 TFPRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL  318 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~  318 (334)
                      .+.+|.....+..-+|.- +..++++|++|++|+||+..++            +++..+.+|...|++++|  +|..+  
T Consensus       432 kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg------------kll~~LsGHs~~vNcVsw--NP~~p--  495 (519)
T KOG0293|consen  432 KYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG------------KLLAVLSGHSKTVNCVSW--NPADP--  495 (519)
T ss_pred             HhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC------------ceeEeecCCcceeeEEec--CCCCH--
Confidence            898887777777666755 4489999999999999999999            899999999999999999  99875  


Q ss_pred             eeeEEeeecceeeee
Q psy2305         319 LVADATCSGQITNVK  333 (334)
Q Consensus       319 ~~~l~t~~~d~~i~~  333 (334)
                       .++|+||+||+|+|
T Consensus       496 -~m~ASasDDgtIRI  509 (519)
T KOG0293|consen  496 -EMFASASDDGTIRI  509 (519)
T ss_pred             -HHhhccCCCCeEEE
Confidence             78999999999987

>KOG2919|consensus

Probab=100.00  E-value=1e-39  Score=249.30  Aligned_cols=312  Identities=37%  Similarity=0.664  Sum_probs=268.1

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      ...+.|||||..|++-+.|+.+++|++.........  ......++...++..++..|++.+|++.+-...|+..++++.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~--~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA--DGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCC--CCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            467899999999999999999999998754332111  111223344567777889999999999888889999999999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccc---cccccc
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKP---WFRKNI  160 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~  160 (334)
                      +++.-|++||.-+|+....+....+.++.....+++|+|||.+|++|....|++||+..+++.+...+...   .+..+.
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            99999999999999999999998888888788999999999999999999999999977787766543222   234678


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      +.+++|+|.....++.|+....+-||.-....++..+.+|.+.|+.+.|.++|+.|++|+|.|..|..||++....++..
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~  289 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA  289 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence            99999999887689999999999999988889999999999999999999999999999999999999999988888988


Q ss_pred             eccccc-CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccce
Q psy2305         241 FPRQVS-TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLL  319 (334)
Q Consensus       241 ~~~~~~-~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~  319 (334)
                      +..|.. ....+-++..|++++|++|+.||.|++||++...           .....+..+...++.+++  +|--    
T Consensus       290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g-----------n~~sv~~~~sd~vNgvsl--nP~m----  352 (406)
T KOG2919|consen  290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG-----------NEVSVTGNYSDTVNGVSL--NPIM----  352 (406)
T ss_pred             hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC-----------Ccccccccccccccceec--Cccc----
Confidence            988876 5666778889999999999999999999999832           456677788999999999  9999    


Q ss_pred             eeEEeeecceeeeeC
Q psy2305         320 VADATCSGQITNVKQ  334 (334)
Q Consensus       320 ~~l~t~~~d~~i~~~  334 (334)
                      +++||++....++++
T Consensus       353 pilatssGqr~f~~~  367 (406)
T KOG2919|consen  353 PILATSSGQRIFKYP  367 (406)
T ss_pred             ceeeeccCceeecCC
Confidence            999999999888763

>KOG0316|consensus

Probab=100.00  E-value=1.3e-39  Score=238.35  Aligned_cols=274  Identities=18%  Similarity=0.216  Sum_probs=237.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .+|+.+.|+-||+|.++++.|.+|++|+...+..+              +++.+ |+..|.+++-       +.|+..++
T Consensus        18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--------------ktYsg-hG~EVlD~~~-------s~Dnskf~   75 (307)
T KOG0316|consen   18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--------------KTYSG-HGHEVLDAAL-------SSDNSKFA   75 (307)
T ss_pred             cceEEEEEccCCCEEEEcCCCceEEeeccccccee--------------eeecC-CCceeeeccc-------cccccccc
Confidence            57999999999999999999999999999999877              45554 6677877655       66888999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +|+.|..+.+||+++|+..+.+..|..     .|+.++|+.+...+++|+ |.++++||.+.......+   .+......
T Consensus        76 s~GgDk~v~vwDV~TGkv~Rr~rgH~a-----qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ---ildea~D~  147 (307)
T KOG0316|consen   76 SCGGDKAVQVWDVNTGKVDRRFRGHLA-----QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ---ILDEAKDG  147 (307)
T ss_pred             cCCCCceEEEEEcccCeeeeecccccc-----eeeEEEecCcceEEEeccccceeEEEEcccCCCCccc---hhhhhcCc
Confidence            999999999999999999999998776     899999999999999998 999999999964333333   56677888


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      |.++..+..   .|++|+.||+++.||++.|+.....-+|  +|++++|+++++.++.++ .|+++++.|-.+ ++.+..
T Consensus       148 V~Si~v~~h---eIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~-l~stlrLlDk~t-GklL~s  220 (307)
T KOG0316|consen  148 VSSIDVAEH---EIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASS-LDSTLRLLDKET-GKLLKS  220 (307)
T ss_pred             eeEEEeccc---EEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEee-ccceeeecccch-hHHHHH
Confidence            999988754   7899999999999999999887766554  899999999999999999 999999999998 999999


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccc-cceeeeccCCCcccce
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDC-TNGVRWKHHKFERDLL  319 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~s~~~~~~~  319 (334)
                      +++|.....-...+++.....+++|++||.|++||+...            ..+..+..+... |.++.+  +|..    
T Consensus       221 YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~------------~~~sk~~~~~~v~v~dl~~--hp~~----  282 (307)
T KOG0316|consen  221 YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE------------TQISKLSVVSTVIVTDLSC--HPTM----  282 (307)
T ss_pred             hcccccceeeeeeeecccceeEEeccCCceEEEEEeccc------------eeeeeeccCCceeEEeeec--ccCc----
Confidence            999988777777888888899999999999999999997            667777777765 899999  9998    


Q ss_pred             eeEEeeeccee
Q psy2305         320 VADATCSGQIT  330 (334)
Q Consensus       320 ~~l~t~~~d~~  330 (334)
                      ..|+++...+.
T Consensus       283 ~~f~~A~~~~~  293 (307)
T KOG0316|consen  283 DDFITATGHGD  293 (307)
T ss_pred             cceeEecCCce
Confidence            66776665544

>KOG0279|consensus

Probab=100.00  E-value=2.6e-39  Score=242.28  Aligned_cols=240  Identities=19%  Similarity=0.272  Sum_probs=200.1

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|..+..++||++.++++.|+++++||+.+++..              ..+. +|...|.++++       ++|++.+++
T Consensus        65 ~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t--------------~~f~-GH~~dVlsva~-------s~dn~qivS  122 (315)
T KOG0279|consen   65 FVSDVVLSSDGNFALSASWDGTLRLWDLATGEST--------------RRFV-GHTKDVLSVAF-------STDNRQIVS  122 (315)
T ss_pred             EecceEEccCCceEEeccccceEEEEEecCCcEE--------------EEEE-ecCCceEEEEe-------cCCCceeec
Confidence            4778999999999999999999999999998765              3444 46678888776       779999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      |++|.+|++|+... .+..++....+.+   .|.|+.|+|+  ..+|++++ |++|++||++.  ..+..   .+.+|.+
T Consensus       123 GSrDkTiklwnt~g-~ck~t~~~~~~~~---WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~--~~l~~---~~~gh~~  193 (315)
T KOG0279|consen  123 GSRDKTIKLWNTLG-VCKYTIHEDSHRE---WVSCVRFSPNESNPIIVSASWDKTVKVWNLRN--CQLRT---TFIGHSG  193 (315)
T ss_pred             CCCcceeeeeeecc-cEEEEEecCCCcC---cEEEEEEcCCCCCcEEEEccCCceEEEEccCC--cchhh---ccccccc
Confidence            99999999999864 4444444433233   8999999998  67888887 99999999994  44444   6889999


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccce
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                      .++.++++|||. +.++|+.||.+.+||++.++.++.+. |...|.+++|+|+.-.|+.+.  +..|+|||+.+ +..+.
T Consensus       194 ~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at--~~sIkIwdl~~-~~~v~  268 (315)
T KOG0279|consen  194 YVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT--ATSIKIWDLES-KAVVE  268 (315)
T ss_pred             cEEEEEECCCCC-EEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc--CCceEEEeccc-hhhhh
Confidence            999999999999 99999999999999999999988887 788999999999987777765  67799999998 66665


Q ss_pred             eecccc-------cCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         240 TFPRQV-------STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       240 ~~~~~~-------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      .+....       .....++++|++||..|++|-.|+.|++|.+..
T Consensus       269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             hccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence            554322       133466789999999999999999999998753

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.8e-38  Score=257.88  Aligned_cols=277  Identities=25%  Similarity=0.334  Sum_probs=237.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|.+++|+|++++|++++.||.|++|++.+++..              ..+. .+...+..+.|       +|++++++
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--------------~~~~-~~~~~i~~~~~-------~~~~~~l~   67 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--------------RTLK-GHTGPVRDVAA-------SADGTYLA   67 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--------------EEEe-cCCcceeEEEE-------CCCCCEEE
Confidence            57999999999999999999999999999887654              2232 34466767776       66888999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.++.|++|++.+++....+..+..     .+.++.|++++++++++. ++.+.+||+.+ ++...    .+..|...
T Consensus        68 ~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~----~~~~~~~~  137 (289)
T cd00200          68 SGSSDKTIRLWDLETGECVRTLTGHTS-----YVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLT----TLRGHTDW  137 (289)
T ss_pred             EEcCCCeEEEEEcCcccceEEEeccCC-----cEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEE----EeccCCCc
Confidence            999999999999998877777775443     799999999999999888 99999999985 44444    45678889


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      +.++.|+|++. ++++++.++.|++||+++++.+..+..|...+.++.|+|+++.+++++ .++.+++||++. +..+..
T Consensus       138 i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~-~~~~~~  214 (289)
T cd00200         138 VNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLWDLST-GKCLGT  214 (289)
T ss_pred             EEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEEEECCC-Cceecc
Confidence            99999999987 888888899999999999999999988998999999999999999999 799999999987 666666


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV  320 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~  320 (334)
                      +..+  ...+.++.|+|++.++++++.||.|++|++.++            +....+..|...|.+++|  +|++    +
T Consensus       215 ~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~------------~~~~~~~~~~~~i~~~~~--~~~~----~  274 (289)
T cd00200         215 LRGH--ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG------------ECVQTLSGHTNSVTSLAW--SPDG----K  274 (289)
T ss_pred             hhhc--CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc------------eeEEEccccCCcEEEEEE--CCCC----C
Confidence            6544  457888999999999998888999999999986            666777788889999999  9999    9


Q ss_pred             eEEeeecceeeee
Q psy2305         321 ADATCSGQITNVK  333 (334)
Q Consensus       321 ~l~t~~~d~~i~~  333 (334)
                      +|++++.||.+++
T Consensus       275 ~l~~~~~d~~i~i  287 (289)
T cd00200         275 RLASGSADGTIRI  287 (289)
T ss_pred             EEEEecCCCeEEe
Confidence            9999999999875

>KOG0273|consensus

Probab=100.00  E-value=3.1e-39  Score=257.82  Aligned_cols=283  Identities=16%  Similarity=0.206  Sum_probs=236.7

Q ss_pred             ceeEEEEcCCCc-EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceee-----eeeeceeEEEEEEecccceecCC
Q psy2305           3 IEEDVDEAPDGT-CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTL-----KIKEGGIIYDYVWYPKTSSIDGF   76 (334)
Q Consensus         3 ~V~~~~~sp~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~s~~   76 (334)
                      +|.+.+|+|-.. .|++++.|-+.++|++.......      .....+.+.+     .......|++++|       +.+
T Consensus       180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~------~~q~~lrh~~~~~~~s~~~nkdVT~L~W-------n~~  246 (524)
T KOG0273|consen  180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIG------STQLVLRHCIREGGKSVPSNKDVTSLDW-------NND  246 (524)
T ss_pred             ceEEEecCchhhhhhhccCCccceeeeeehhhcccc------chhhhhhhhhhhhcccCCccCCcceEEe-------cCC
Confidence            589999999655 89999999999999997521110      0000011111     1223467888888       679


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccc
Q psy2305          77 TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        77 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      |..||+|+.||.+++|+. +|.++.++..|..     +|.++.|+.+|.+|++++ |+++.+||..+ +...+    .+.
T Consensus       247 G~~LatG~~~G~~riw~~-~G~l~~tl~~Hkg-----PI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q----~f~  315 (524)
T KOG0273|consen  247 GTLLATGSEDGEARIWNK-DGNLISTLGQHKG-----PIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQ----QFE  315 (524)
T ss_pred             CCeEEEeecCcEEEEEec-CchhhhhhhccCC-----ceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEE----eee
Confidence            999999999999999995 6778888877655     999999999999999998 99999999986 44444    466


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG  235 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~  235 (334)
                      -|..+-..+.|-.+.  .|++++.|+.|+++.+....++.++.+|.++|.++.|.|.|.+|++++ .|++++||.... .
T Consensus       316 ~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~-~  391 (524)
T KOG0273|consen  316 FHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQ-S  391 (524)
T ss_pred             eccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCC-C
Confidence            777777789997776  589999999999999999999999999999999999999999999999 999999999876 5


Q ss_pred             ccceeecccccCCceEEEEecCCC---------ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccce
Q psy2305         236 CILHTFPRQVSTNQRVYFDLTSCS---------NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG  306 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  306 (334)
                      .....+..|  ...+..+.|+|.|         ..+++++.|++|++||+..+            .++..|..|..+|++
T Consensus       392 ~~~~~l~~H--skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------------v~i~~f~kH~~pVys  457 (524)
T KOG0273|consen  392 NSVHDLQAH--SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------------VPIHTLMKHQEPVYS  457 (524)
T ss_pred             cchhhhhhh--ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC------------ceeEeeccCCCceEE
Confidence            666777766  6677888899865         47899999999999999999            899999999999999


Q ss_pred             eeeccCCCcccceeeEEeeecceeeee
Q psy2305         307 VRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       307 ~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ++|  +|++    ++||+|+-||.|.|
T Consensus       458 vaf--S~~g----~ylAsGs~dg~V~i  478 (524)
T KOG0273|consen  458 VAF--SPNG----RYLASGSLDGCVHI  478 (524)
T ss_pred             EEe--cCCC----cEEEecCCCCeeEe
Confidence            999  9999    99999999999876

>KOG0315|consensus

Probab=100.00  E-value=1.2e-38  Score=235.13  Aligned_cols=260  Identities=12%  Similarity=0.175  Sum_probs=215.7

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      -|+.+...||++.||+++. ..||+||+.++...            +...+.+ |...|..+.|       ..+|+.+++
T Consensus        42 qVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~------------Pv~t~e~-h~kNVtaVgF-------~~dgrWMyT  100 (311)
T KOG0315|consen   42 QVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN------------PVATFEG-HTKNVTAVGF-------QCDGRWMYT  100 (311)
T ss_pred             ceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC------------ceeEEec-cCCceEEEEE-------eecCeEEEe
Confidence            4889999999999999876 46999999988753            2345554 4567887777       669999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      |+.||+++|||++...+.+.++.. .     +|+++..+|+...|++|. +|.|++||+........    ........|
T Consensus       101 gseDgt~kIWdlR~~~~qR~~~~~-s-----pVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~----liPe~~~~i  170 (311)
T KOG0315|consen  101 GSEDGTVKIWDLRSLSCQRNYQHN-S-----PVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE----LIPEDDTSI  170 (311)
T ss_pred             cCCCceEEEEeccCcccchhccCC-C-----CcceEEecCCcceEEeecCCCcEEEEEccCCccccc----cCCCCCcce
Confidence            999999999999987776666643 2     899999999999999997 99999999986322222    244556789


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCC------CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDG------RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG  235 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~  235 (334)
                      .++...|+|. +++.+...|+.++|++-+.      +++..++.|.+-+..+.+||++++|++++ .|.+++||+.+..-
T Consensus       171 ~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~~~  248 (311)
T KOG0315|consen  171 QSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDDFF  248 (311)
T ss_pred             eeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec-CCceEEEEecCCce
Confidence            9999999999 9999999999999999653      45667889999999999999999999999 99999999999743


Q ss_pred             ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeee
Q psy2305         236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW  309 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  309 (334)
                      +....+.+|  ..+++..+||.||+||++|+.|+.+++|++..+            +.+..+.+|.....+++.
T Consensus       249 kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~------------k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  249 KLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAG------------KEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             eeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccC------------ceeeecCCcccccEEEEe
Confidence            444555555  578999999999999999999999999999998            677888888776655554

>KOG0282|consensus

Probab=100.00  E-value=2.7e-40  Score=264.66  Aligned_cols=280  Identities=17%  Similarity=0.220  Sum_probs=240.4

Q ss_pred             CceeEEEEcC-CCcEEEEeeCCCeEEEEECCC-CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPS-ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      +.|.++.|.| .+.+|++++.|+.|+||++.. +..+              .++. +|..+|.+++|       +.+|..
T Consensus       215 kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l--------------rtf~-gH~k~Vrd~~~-------s~~g~~  272 (503)
T KOG0282|consen  215 KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL--------------RTFK-GHRKPVRDASF-------NNCGTS  272 (503)
T ss_pred             cccchhhhccceeeEEEecCCCceEEEEEEecCccee--------------hhhh-cchhhhhhhhc-------cccCCe
Confidence            5688999999 899999999999999999987 4443              4554 46788988877       779999


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC-CEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +++++.|+.|++||+++|+++..+....      .++++.|+||+ +.+++|. |+.|+.||+++ ++.++    .+..|
T Consensus       273 fLS~sfD~~lKlwDtETG~~~~~f~~~~------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-~kvvq----eYd~h  341 (503)
T KOG0282|consen  273 FLSASFDRFLKLWDTETGQVLSRFHLDK------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-GKVVQ----EYDRH  341 (503)
T ss_pred             eeeeecceeeeeeccccceEEEEEecCC------CceeeecCCCCCcEEEEecCCCcEEEEeccc-hHHHH----HHHhh
Confidence            9999999999999999999999887633      78999999999 5666775 99999999997 55554    67889


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC--
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP--  234 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~--  234 (334)
                      -+.|..+.|-++|+ .+++.++|++++||+.+.+-+++... .+.-...++..+|++++++.-+ .|+.|.++.+...  
T Consensus       342 Lg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs-~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  342 LGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS-MDNYIAIFSTVPPFR  419 (503)
T ss_pred             hhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc-cCceEEEEecccccc
Confidence            99999999999999 99999999999999998876554432 1223455899999999999999 9999999987642  


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                      ....+.+.+|...+....+.|||||.+|++|+.||.+.+||.++.            +.+..+.+|.+.+..+.|  +|.
T Consensus       420 ~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~------------kl~~~lkah~~~ci~v~w--HP~  485 (503)
T KOG0282|consen  420 LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT------------KLVSKLKAHDQPCIGVDW--HPV  485 (503)
T ss_pred             cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh------------hhhhccccCCcceEEEEe--cCC
Confidence            233467888888888999999999999999999999999999997            788999999999999999  998


Q ss_pred             cccceeeEEeeecceeeee
Q psy2305         315 ERDLLVADATCSGQITNVK  333 (334)
Q Consensus       315 ~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+   ..+||||.||.|++
T Consensus       486 e~---Skvat~~w~G~Iki  501 (503)
T KOG0282|consen  486 EP---SKVATCGWDGLIKI  501 (503)
T ss_pred             Cc---ceeEecccCceeEe
Confidence            75   78999999999986

>KOG0285|consensus

Probab=100.00  E-value=7.8e-39  Score=247.58  Aligned_cols=279  Identities=16%  Similarity=0.189  Sum_probs=236.7

Q ss_pred             CCceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           1 MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         1 ~d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +..|+|+++.|.++.|++|+.|++++|||+.++++.              .++.+ |-..|..+++       |+--.|+
T Consensus       151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk--------------ltltG-hi~~vr~vav-------S~rHpYl  208 (460)
T KOG0285|consen  151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK--------------LTLTG-HIETVRGVAV-------SKRHPYL  208 (460)
T ss_pred             cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE--------------Eeecc-hhheeeeeee-------cccCceE
Confidence            357999999999999999999999999999999986              34443 5567777666       6677899


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++++.|+.|+.||++..+.++.+.+|-.     .|.+++.+|.-..|++|+ |..+++||+++ ...+.    .+.+|..
T Consensus       209 Fs~gedk~VKCwDLe~nkvIR~YhGHlS-----~V~~L~lhPTldvl~t~grDst~RvWDiRt-r~~V~----~l~GH~~  278 (460)
T KOG0285|consen  209 FSAGEDKQVKCWDLEYNKVIRHYHGHLS-----GVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-RASVH----VLSGHTN  278 (460)
T ss_pred             EEecCCCeeEEEechhhhhHHHhccccc-----eeEEEeccccceeEEecCCcceEEEeeecc-cceEE----EecCCCC
Confidence            9999999999999999999998887655     999999999999999987 99999999997 44444    6899999


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccce
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                      +|..+.+.|... .+++|+.|++|++||++.++.+.++..|...+.+++.+|....+++++  ...|+-|++.. +..+.
T Consensus       279 ~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas--~dnik~w~~p~-g~f~~  354 (460)
T KOG0285|consen  279 PVASVMCQPTDP-QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS--PDNIKQWKLPE-GEFLQ  354 (460)
T ss_pred             cceeEEeecCCC-ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC--CccceeccCCc-cchhh
Confidence            999999999988 999999999999999999999999999999999999999999999988  44699999987 77677


Q ss_pred             eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc-----cccccceeeeccCCC
Q psy2305         240 TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA-----HQDCTNGVRWKHHKF  314 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~s~~  314 (334)
                      .+.+|  ...+.+++.+.|+ ++++|+.+|.+.+||.+++-..         +..+...+     .+..|...+|  ...
T Consensus       355 nlsgh--~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~ny---------Q~~~t~vqpGSl~sEagI~as~f--Dkt  420 (460)
T KOG0285|consen  355 NLSGH--NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNY---------QRGQTIVQPGSLESEAGIFASCF--DKT  420 (460)
T ss_pred             ccccc--cceeeeeeeccCc-eEEEcCCceEEEEEecCcCccc---------ccccccccCCccccccceeEEee--ccc
Confidence            77766  5566777766554 7788999999999999998432         22221111     2346899999  999


Q ss_pred             cccceeeEEeeecceeeee
Q psy2305         315 ERDLLVADATCSGQITNVK  333 (334)
Q Consensus       315 ~~~~~~~l~t~~~d~~i~~  333 (334)
                      +    ..|++|..|++|++
T Consensus       421 g----~rlit~eadKtIk~  435 (460)
T KOG0285|consen  421 G----SRLITGEADKTIKM  435 (460)
T ss_pred             C----ceEEeccCCcceEE
Confidence            9    99999999999986

>KOG0291|consensus

Probab=100.00  E-value=5.8e-38  Score=263.86  Aligned_cols=289  Identities=15%  Similarity=0.184  Sum_probs=236.4

Q ss_pred             ceeEEEEcCCCcEEEEeeCC-CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSND-NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +|..++|+..|..||.|+.. |.+-||++.+...+              -... +|-..+.++++       +|||++++
T Consensus       309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV--------------lKQQ-gH~~~i~~l~Y-------SpDgq~ia  366 (893)
T KOG0291|consen  309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV--------------LKQQ-GHSDRITSLAY-------SPDGQLIA  366 (893)
T ss_pred             eeeEEEecccCCEEEEcCCccceEEEEEeecccee--------------eecc-ccccceeeEEE-------CCCCcEEE
Confidence            57889999999999998754 89999999988765              2233 35577888777       78999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +|+.||.|+|||...|-+..+|..|..     .|+.+.|+..|+.+++++ ||+|+.||+.. .+..+.   ........
T Consensus       367 TG~eDgKVKvWn~~SgfC~vTFteHts-----~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRT---ft~P~p~Q  437 (893)
T KOG0291|consen  367 TGAEDGKVKVWNTQSGFCFVTFTEHTS-----GVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRT---FTSPEPIQ  437 (893)
T ss_pred             eccCCCcEEEEeccCceEEEEeccCCC-----ceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeee---ecCCCcee
Confidence            999999999999999999999998776     999999999999999998 99999999987 666664   22334556


Q ss_pred             eEEEEEcCCCCcEEEEeecCC-eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccce
Q psy2305         161 VSAIAINPVHPDICALGTYSK-IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                      ..|++..|.|. ++..|+.|. .|++|++++|+.+-.+.||+++|.+++|+|.+..|++++ .|++|++||+-.......
T Consensus       438 fscvavD~sGe-lV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if~s~~~vE  515 (893)
T KOG0291|consen  438 FSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIFSSSGTVE  515 (893)
T ss_pred             eeEEEEcCCCC-EEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc-ccceEEEEEeeccCceee
Confidence            78999999999 888888775 699999999999999999999999999999999999999 899999999986444455


Q ss_pred             eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCc----ccccccccee----cccccccceeeecc
Q psy2305         240 TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYE----ESVQEPLYKF----SAHQDCTNGVRWKH  311 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~i~~~~~~~  311 (334)
                      ++.   ....++.++|+|+|+.|+++..||.|.+||...+....+.+.    .........+    .......+.+++  
T Consensus       516 tl~---i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~y--  590 (893)
T KOG0291|consen  516 TLE---IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICY--  590 (893)
T ss_pred             eEe---eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEE--
Confidence            554   255688899999999999999999999999987644322111    0111111111    122347899999  


Q ss_pred             CCCcccceeeEEeeecceeeee
Q psy2305         312 HKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       312 s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ++||    ..|++||....|++
T Consensus       591 SaDG----~~IlAgG~sn~iCi  608 (893)
T KOG0291|consen  591 SADG----KCILAGGESNSICI  608 (893)
T ss_pred             cCCC----CEEEecCCcccEEE
Confidence            9999    99999999999886

>KOG0318|consensus

Probab=100.00  E-value=6.6e-37  Score=247.79  Aligned_cols=241  Identities=14%  Similarity=0.145  Sum_probs=192.3

Q ss_pred             cceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeee
Q psy2305          70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECV  148 (334)
Q Consensus        70 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~  148 (334)
                      ++.|+|||.++++++.||.+.+||-.+|+.+..+..  ...+.+.|..++|+||++.+++++ |.+++|||+.+ .....
T Consensus       195 ~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~--~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~  271 (603)
T KOG0318|consen  195 CVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED--SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVS  271 (603)
T ss_pred             eEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC--CCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEE
Confidence            466699999999999999999999999999999883  222333999999999999999887 99999999986 33332


Q ss_pred             eecc---------------------------------------cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC
Q psy2305         149 SRNL---------------------------------------KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS  189 (334)
Q Consensus       149 ~~~~---------------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  189 (334)
                      ..++                                       ...+|...|+++..+|+++ +|++|+.||.|.-||..
T Consensus       272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~  350 (603)
T KOG0318|consen  272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSG  350 (603)
T ss_pred             EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecC
Confidence            2211                                       5678999999999999998 99999999999999985


Q ss_pred             CCCce-----------EeeccCC---------------------------------------------------------
Q psy2305         190 DGRPL-----------FFLKGHN---------------------------------------------------------  201 (334)
Q Consensus       190 ~~~~~-----------~~~~~~~---------------------------------------------------------  201 (334)
                      ++..-           ..+..++                                                         
T Consensus       351 ~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~  430 (603)
T KOG0318|consen  351 SGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVL  430 (603)
T ss_pred             CccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEE
Confidence            54211           1110000                                                         


Q ss_pred             -------------CCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC
Q psy2305         202 -------------GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN  268 (334)
Q Consensus       202 -------------~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  268 (334)
                                   -...+++++|+++.+++|+ .|+.+++|.+.. ...........+...++.+++|||+.|||++...
T Consensus       431 l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g-~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~  508 (603)
T KOG0318|consen  431 LQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSG-DELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS  508 (603)
T ss_pred             EecCCcceeeccccccceEEEcCCCCEEEEec-ccceEEEEEecC-CcccceeeeecccCCceEEEECCCCcEEEEeccC
Confidence                         0134678899999999999 899999999985 3333332333357889999999999999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         269 GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       269 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +.+.+||+.+.+           .....+.-|...|.+++|  +|+.    .++||||-|-.|.|
T Consensus       509 rkvv~yd~~s~~-----------~~~~~w~FHtakI~~~aW--sP~n----~~vATGSlDt~Vii  556 (603)
T KOG0318|consen  509 RKVVLYDVASRE-----------VKTNRWAFHTAKINCVAW--SPNN----KLVATGSLDTNVII  556 (603)
T ss_pred             CcEEEEEcccCc-----------eecceeeeeeeeEEEEEe--CCCc----eEEEeccccceEEE
Confidence            999999999973           233445559999999999  9999    99999999998875

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.2e-37  Score=282.19  Aligned_cols=295  Identities=15%  Similarity=0.247  Sum_probs=224.4

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++|+|+|++||+|+.|+.|+||+........      ...  ........+...+.+++|+|      +++.+|+
T Consensus       484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~------~~~--~~~~~~~~~~~~v~~l~~~~------~~~~~la  549 (793)
T PLN00181        484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG------RDI--HYPVVELASRSKLSGICWNS------YIKSQVA  549 (793)
T ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc------ccc--ccceEEecccCceeeEEecc------CCCCEEE
Confidence            468999999999999999999999999986421110      000  00111122345688888853      2577899


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +++.||.|++||+.+++.+..+..|..     .|++++|+| ++.+|++|+ |+.|++||+++ +....    .+. +..
T Consensus       550 s~~~Dg~v~lWd~~~~~~~~~~~~H~~-----~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~----~~~-~~~  618 (793)
T PLN00181        550 SSNFEGVVQVWDVARSQLVTEMKEHEK-----RVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIG----TIK-TKA  618 (793)
T ss_pred             EEeCCCeEEEEECCCCeEEEEecCCCC-----CEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEE----EEe-cCC
Confidence            999999999999999998888877654     899999997 788999887 99999999986 44443    233 346


Q ss_pred             ceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCC-ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC---
Q psy2305         160 IVSAIAINP-VHPDICALGTYSKIIGLFSDSDGR-PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP---  234 (334)
Q Consensus       160 ~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~---  234 (334)
                      .+.++.|++ ++. +|++|+.||.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++ .|++|++||++..   
T Consensus       619 ~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~~~  695 (793)
T PLN00181        619 NICCVQFPSESGR-SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSISG  695 (793)
T ss_pred             CeEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCccc
Confidence            789999954 577 99999999999999998765 567788999999999997 678999999 8999999999742   


Q ss_pred             --CccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccc--ceecccccccceeeec
Q psy2305         235 --GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL--YKFSAHQDCTNGVRWK  310 (334)
Q Consensus       235 --~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~  310 (334)
                        ..++..+.+|  ...+..++|+|++.+|++|+.|+.|++|+............. ....+  .....+...|.+++| 
T Consensus       696 ~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~V~~v~w-  771 (793)
T PLN00181        696 INETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFK-TIDPVSGLEVDDASQFISSVCW-  771 (793)
T ss_pred             cCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecc-cCCcccccccCCCCcEEEEEEE-
Confidence              2456667766  456677889999999999999999999998754211000000 00000  112345567999999 


Q ss_pred             cCCCcccceeeEEeeecceeeee
Q psy2305         311 HHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       311 ~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                       +|++    .+|++|+.||.|++
T Consensus       772 -s~~~----~~lva~~~dG~I~i  789 (793)
T PLN00181        772 -RGQS----STLVAANSTGNIKI  789 (793)
T ss_pred             -cCCC----CeEEEecCCCcEEE
Confidence             9999    99999999999986

>KOG0276|consensus

Probab=100.00  E-value=6.2e-38  Score=258.65  Aligned_cols=280  Identities=18%  Similarity=0.244  Sum_probs=245.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      |.|.++.|+|....++++-.+|.|.|||.++....              +.+... ..+|.+..|       -+..+.++
T Consensus        14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV--------------ksfeV~-~~PvRa~kf-------iaRknWiv   71 (794)
T KOG0276|consen   14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV--------------KSFEVS-EVPVRAAKF-------IARKNWIV   71 (794)
T ss_pred             CceeeeecCCCCceEEEeeecCeeEEEecccceee--------------eeeeec-ccchhhhee-------eeccceEE
Confidence            67999999999999999999999999999998765              344332 245655555       45778999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +|+.|..|++|+..+++.+..|..|..     .|++++.+|...++++++ |-.|++||-+. +-.+.+   .+.+|+..
T Consensus        72 ~GsDD~~IrVfnynt~ekV~~FeAH~D-----yIR~iavHPt~P~vLtsSDDm~iKlW~we~-~wa~~q---tfeGH~Hy  142 (794)
T KOG0276|consen   72 TGSDDMQIRVFNYNTGEKVKTFEAHSD-----YIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-EWACEQ---TFEGHEHY  142 (794)
T ss_pred             EecCCceEEEEecccceeeEEeecccc-----ceeeeeecCCCCeEEecCCccEEEEeeccC-ceeeee---EEcCcceE
Confidence            999999999999999999999998665     899999999999999998 89999999986 444444   78999999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC--cEEEeeecCCCeEEEEEccCCCccc
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG--ILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      |.+++|+|...+.+++++-|++|++|.+.+..+..++++|...|+++.|-+-|  .+|++|+ +|.++++||..+ +.++
T Consensus       143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiKvWDyQt-k~CV  220 (794)
T KOG0276|consen  143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIKVWDYQT-KSCV  220 (794)
T ss_pred             EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-CCceEEEeecch-HHHH
Confidence            99999999998899999999999999999999999999999999999998754  6999999 899999999999 8899


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL  318 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~  318 (334)
                      +++.+|  ...+..+.|+|.-.++++|++||+++||+..+-            +....+.-.-+.+++++-  .+.+   
T Consensus       221 ~TLeGH--t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty------------~lE~tLn~gleRvW~I~~--~k~~---  281 (794)
T KOG0276|consen  221 QTLEGH--TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY------------KLEKTLNYGLERVWCIAA--HKGD---  281 (794)
T ss_pred             HHhhcc--cccceEEEecCCCcEEEEecCCccEEEecCcce------------ehhhhhhcCCceEEEEee--cCCC---
Confidence            999998  556777889999999999999999999999987            455556555678999998  8888   


Q ss_pred             eeeEEeeecceeeeeC
Q psy2305         319 LVADATCSGQITNVKQ  334 (334)
Q Consensus       319 ~~~l~t~~~d~~i~~~  334 (334)
                       +.++.|.+.|.+.++
T Consensus       282 -~~i~vG~Deg~i~v~  296 (794)
T KOG0276|consen  282 -GKIAVGFDEGSVTVK  296 (794)
T ss_pred             -CeEEEeccCCcEEEE
Confidence             889999999988653

>KOG0286|consensus

Probab=100.00  E-value=2.1e-37  Score=233.54  Aligned_cols=245  Identities=18%  Similarity=0.198  Sum_probs=211.0

Q ss_pred             eeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee
Q psy2305          52 TLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF  131 (334)
Q Consensus        52 ~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (334)
                      ++++ |.+.|+++.|       ++|.++|++++.||.+.|||..+......++....     .|..++|+|.|+++++|+
T Consensus        50 ~LkG-H~~Ki~~~~w-------s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~-----WVMtCA~sPSg~~VAcGG  116 (343)
T KOG0286|consen   50 TLKG-HLNKIYAMDW-------STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-----WVMTCAYSPSGNFVACGG  116 (343)
T ss_pred             Eecc-cccceeeeEe-------cCCcCeEEeeccCCeEEEEEcccccceeEEecCce-----eEEEEEECCCCCeEEecC
Confidence            4554 6689999999       67999999999999999999988877777766544     899999999999999998


Q ss_pred             -CCcEEEEEcCCCCCe-eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEE
Q psy2305         132 -LSEVKIFSTDRPGRE-CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEF  209 (334)
Q Consensus       132 -d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  209 (334)
                       |+...||++.+.... .......+.+|.+.+.|+.|-+|+  .|++++.|.++.+||+++++.+..|.+|.+.|.++.+
T Consensus       117 LdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl  194 (343)
T KOG0286|consen  117 LDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL  194 (343)
T ss_pred             cCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence             999999999853111 111111589999999999999976  6899999999999999999999999999999999999


Q ss_pred             cc-CCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcc
Q psy2305         210 SS-NGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEE  288 (334)
Q Consensus       210 ~~-~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  288 (334)
                      +| +++.+++|+ .|+..++||++. +...+.|.+|  ...+.++.|.|+|.-+++|+.|++.++||++..         
T Consensus       195 ~p~~~ntFvSg~-cD~~aklWD~R~-~~c~qtF~gh--esDINsv~ffP~G~afatGSDD~tcRlyDlRaD---------  261 (343)
T KOG0286|consen  195 SPSDGNTFVSGG-CDKSAKLWDVRS-GQCVQTFEGH--ESDINSVRFFPSGDAFATGSDDATCRLYDLRAD---------  261 (343)
T ss_pred             CCCCCCeEEecc-cccceeeeeccC-cceeEeeccc--ccccceEEEccCCCeeeecCCCceeEEEeecCC---------
Confidence            99 999999999 899999999998 7889999988  556788899999999999999999999999997         


Q ss_pred             ccccccceecc--cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         289 SVQEPLYKFSA--HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       289 ~~~~~~~~~~~--~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                         +.+..+..  -...|++++|  |..|    ++|++|..|.++.+
T Consensus       262 ---~~~a~ys~~~~~~gitSv~F--S~SG----RlLfagy~d~~c~v  299 (343)
T KOG0286|consen  262 ---QELAVYSHDSIICGITSVAF--SKSG----RLLFAGYDDFTCNV  299 (343)
T ss_pred             ---cEEeeeccCcccCCceeEEE--cccc----cEEEeeecCCceeE
Confidence               44444442  2347999999  9999    99999999887653

>KOG0296|consensus

Probab=100.00  E-value=3.6e-37  Score=238.76  Aligned_cols=275  Identities=14%  Similarity=0.118  Sum_probs=229.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|.+++.+|+.++++||+.|..-.||++.++...               ....+|...|.++.|       +.+|.+||
T Consensus        65 ~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~---------------~eltgHKDSVt~~~F-------shdgtlLA  122 (399)
T KOG0296|consen   65 DSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA---------------GELTGHKDSVTCCSF-------SHDGTLLA  122 (399)
T ss_pred             CceEEEEeCCCCceEEecCCCceEEEEEccCCcce---------------eEecCCCCceEEEEE-------ccCceEEE
Confidence            67999999999999999999999999999999865               334457788988777       88999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +|..+|.|+||+..++.....+.....     .+.-|.|+|.+..|++|+ ||.+.+|.+.. +..++    .+.+|..+
T Consensus       123 TGdmsG~v~v~~~stg~~~~~~~~e~~-----dieWl~WHp~a~illAG~~DGsvWmw~ip~-~~~~k----v~~Gh~~~  192 (399)
T KOG0296|consen  123 TGDMSGKVLVFKVSTGGEQWKLDQEVE-----DIEWLKWHPRAHILLAGSTDGSVWMWQIPS-QALCK----VMSGHNSP  192 (399)
T ss_pred             ecCCCccEEEEEcccCceEEEeecccC-----ceEEEEecccccEEEeecCCCcEEEEECCC-cceee----EecCCCCC
Confidence            999999999999999988777752222     788999999999999998 99999999996 34444    68899999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC---------------------------------------
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN---------------------------------------  201 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------------------------------  201 (334)
                      +++=.|.|+|+ .++++..||+|++|+..+++++..+....                                       
T Consensus       193 ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  193 CTCGEFIPDGK-RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN  271 (399)
T ss_pred             cccccccCCCc-eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence            99999999999 99999999999999999998776654110                                       


Q ss_pred             ------------CCeEEEEEcc---CCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee
Q psy2305         202 ------------GGITHLEFSS---NGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN  266 (334)
Q Consensus       202 ------------~~i~~~~~~~---~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  266 (334)
                                  ..+.++.+.|   .-.+.++|+ .||+|.|||+.. ..+...+. |  ...++.+.|-+ ..+|++++
T Consensus       272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~-vdG~i~iyD~a~-~~~R~~c~-h--e~~V~~l~w~~-t~~l~t~c  345 (399)
T KOG0296|consen  272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGS-VDGTIAIYDLAA-STLRHICE-H--EDGVTKLKWLN-TDYLLTAC  345 (399)
T ss_pred             CCCCccccccchhhhhhhhhcccccccchhhccc-ccceEEEEeccc-chhheecc-C--CCceEEEEEcC-cchheeec
Confidence                        0111222222   234567788 899999999986 45444443 3  55689999998 78999999


Q ss_pred             cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         267 TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       267 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+|.|+.||.++|            +++..+.+|...|.++++  +|+.    ++++|+|.|++.++
T Consensus       346 ~~g~v~~wDaRtG------------~l~~~y~GH~~~Il~f~l--s~~~----~~vvT~s~D~~a~V  394 (399)
T KOG0296|consen  346 ANGKVRQWDARTG------------QLKFTYTGHQMGILDFAL--SPQK----RLVVTVSDDNTALV  394 (399)
T ss_pred             cCceEEeeecccc------------ceEEEEecCchheeEEEE--cCCC----cEEEEecCCCeEEE
Confidence            9999999999999            889999999999999999  9999    99999999998765

>KOG0281|consensus

Probab=100.00  E-value=5.7e-39  Score=247.73  Aligned_cols=275  Identities=17%  Similarity=0.220  Sum_probs=228.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|+|+.+.  ...+++|..|++|+|||.++....              ..+. +|.+.|.++.|         +.+.++
T Consensus       198 kgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~--------------~~L~-GHtGSVLCLqy---------d~rvii  251 (499)
T KOG0281|consen  198 KGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECL--------------KILT-GHTGSVLCLQY---------DERVIV  251 (499)
T ss_pred             CceEEEEec--chhhhcccccCceEEeccccHHHH--------------Hhhh-cCCCcEEeeec---------cceEEE
Confidence            678999885  457899999999999999988765              3444 46788999988         788999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +|+.|.+|++||+++|+.+.++-.|..     .|..+.|+.  .++++++ |.++.+||+..+.......  .+.+|...
T Consensus       252 sGSSDsTvrvWDv~tge~l~tlihHce-----aVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rr--VLvGHrAa  322 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGEPLNTLIHHCE-----AVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRR--VLVGHRAA  322 (499)
T ss_pred             ecCCCceEEEEeccCCchhhHHhhhcc-----eeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHH--HHhhhhhh
Confidence            999999999999999999988876554     889999984  5888888 9999999998744221111  57899999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      |+.+.|+..   ++++++.|.+|++|++.+.+.++++.+|...|.|+.+  .|+++++|+ .|.+|++||+.. +.+++.
T Consensus       323 VNvVdfd~k---yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGS-SDntIRlwdi~~-G~cLRv  395 (499)
T KOG0281|consen  323 VNVVDFDDK---YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SDNTIRLWDIEC-GACLRV  395 (499)
T ss_pred             eeeeccccc---eEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecC-CCceEEEEeccc-cHHHHH
Confidence            999999654   9999999999999999999999999999999999987  588999999 899999999998 999999


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV  320 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~  320 (334)
                      +.+|  ..-+.++.|  +.+.+++|+.||+|++||+..+..+..|   ...-++..+..|.+.|..+.|    |.    .
T Consensus       396 LeGH--EeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~---~~~~Cl~~lv~hsgRVFrLQF----D~----f  460 (499)
T KOG0281|consen  396 LEGH--EELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAP---ASTLCLRTLVEHSGRVFRLQF----DE----F  460 (499)
T ss_pred             Hhch--HHhhhheee--cCceeeeccccceEEEEecccccCCccc---ccchHHHhhhhccceeEEEee----cc----e
Confidence            9998  445666766  4678999999999999999987533111   112355667789999999999    77    7


Q ss_pred             eEEeeecceeeee
Q psy2305         321 ADATCSGQITNVK  333 (334)
Q Consensus       321 ~l~t~~~d~~i~~  333 (334)
                      .+++++.|.+|-|
T Consensus       461 qIvsssHddtILi  473 (499)
T KOG0281|consen  461 QIISSSHDDTILI  473 (499)
T ss_pred             EEEeccCCCeEEE
Confidence            7999999888754

>KOG0318|consensus

Probab=100.00  E-value=2.5e-36  Score=244.43  Aligned_cols=287  Identities=18%  Similarity=0.246  Sum_probs=226.0

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee--eeeceeEEEEEEecccceecCCCcEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK--IKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      .|+|+.|+|||+++|+++.||++.+||-.+++...              .+.  ..|.+.|+++.|       +||+..+
T Consensus       192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg--------------~l~~~~aHkGsIfalsW-------sPDs~~~  250 (603)
T KOG0318|consen  192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG--------------ELEDSDAHKGSIFALSW-------SPDSTQF  250 (603)
T ss_pred             ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEE--------------EecCCCCccccEEEEEE-------CCCCceE
Confidence            58999999999999999999999999999998762              333  347789999999       7799999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccc--------------------------------------cccccceeEEEEcC
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQ--------------------------------------VDEVTHAYSLAFSL  122 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------------------------------------~~~~~~v~~~~~~~  122 (334)
                      ++++.|.+++|||+.+.++.+++.....                                      .++...|+++..+|
T Consensus       251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~  330 (603)
T KOG0318|consen  251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP  330 (603)
T ss_pred             EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence            9999999999999988776655322110                                      01123789999999


Q ss_pred             CCCEEEEee-CCcEEEEEcCCCCCeeee-----------e--------------------cc------------------
Q psy2305         123 DGNKIYAGF-LSEVKIFSTDRPGRECVS-----------R--------------------NL------------------  152 (334)
Q Consensus       123 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~-----------~--------------------~~------------------  152 (334)
                      ++++|++|+ ||.|.-|+..+. .....           .                    ++                  
T Consensus       331 d~~~i~SgsyDG~I~~W~~~~g-~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~  409 (603)
T KOG0318|consen  331 DGKTIYSGSYDGHINSWDSGSG-TSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK  409 (603)
T ss_pred             CCCEEEeeccCceEEEEecCCc-cccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence            999999998 999999998652 11100           0                    00                  


Q ss_pred             --------------------cccc--------cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC--ceEeeccCCC
Q psy2305         153 --------------------KPWF--------RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR--PLFFLKGHNG  202 (334)
Q Consensus       153 --------------------~~~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~  202 (334)
                                          .+..        -.-...+++++|++. .+++|+.|+.|++|.+....  ....+..|.+
T Consensus       410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a  488 (603)
T KOG0318|consen  410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRA  488 (603)
T ss_pred             eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC-EEEEecccceEEEEEecCCcccceeeeecccC
Confidence                                0000        112346788999999 99999999999999997644  3345567999


Q ss_pred             CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCC
Q psy2305         203 GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLP  282 (334)
Q Consensus       203 ~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  282 (334)
                      +|++++||||+.+|+++. ..+.+.+||..+..........  +...+.+++|+|+..++|+|+.|..|.||+++...  
T Consensus       489 ~iT~vaySpd~~yla~~D-a~rkvv~yd~~s~~~~~~~w~F--HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~--  563 (603)
T KOG0318|consen  489 AITDVAYSPDGAYLAAGD-ASRKVVLYDVASREVKTNRWAF--HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA--  563 (603)
T ss_pred             CceEEEECCCCcEEEEec-cCCcEEEEEcccCceecceeee--eeeeEEEEEeCCCceEEEeccccceEEEEEccChh--
Confidence            999999999999999999 8999999999973322222332  47789999999999999999999999999998863  


Q ss_pred             CCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         283 SSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                               +.+....+|...|+.+.|  -. .    ..|++.|.|..|+.
T Consensus       564 ---------~~i~iknAH~~gVn~v~w--ld-e----~tvvSsG~Da~iK~  598 (603)
T KOG0318|consen  564 ---------KHIIIKNAHLGGVNSVAW--LD-E----STVVSSGQDANIKV  598 (603)
T ss_pred             ---------hheEeccccccCceeEEE--ec-C----ceEEeccCcceeEE
Confidence                     445666789888999999  54 4    57999999998874

>KOG0263|consensus

Probab=100.00  E-value=6.2e-38  Score=265.14  Aligned_cols=230  Identities=17%  Similarity=0.275  Sum_probs=206.7

Q ss_pred             cceecCCCcEEEEeeCCCcEEEEeCCCCe-------------------------------eeEEEcCccccccccceeEE
Q psy2305          70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGE-------------------------------IKATYRPYNQVDEVTHAYSL  118 (334)
Q Consensus        70 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-------------------------------~~~~~~~~~~~~~~~~v~~~  118 (334)
                      +..|++|+.+||.|-.|..|++|.+...+                               ..+.+.+|     .++|...
T Consensus       383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH-----~GPVyg~  457 (707)
T KOG0263|consen  383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH-----SGPVYGC  457 (707)
T ss_pred             eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC-----CCceeee
Confidence            45668999999999999999999876321                               01112222     3399999


Q ss_pred             EEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee
Q psy2305         119 AFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL  197 (334)
Q Consensus       119 ~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  197 (334)
                      .|+|+.++|++++ |+++++|.+.+ ...+.    ...+|..+|..+.|+|.|- +||+++.|++.++|.....++.+.+
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t-~s~~V----~y~GH~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~~~PlRif  531 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDT-WSCLV----IYKGHLAPVWDVQFAPRGY-YFATASHDQTARLWSTDHNKPLRIF  531 (707)
T ss_pred             eecccccceeeccCCcceeeeeccc-ceeEE----EecCCCcceeeEEecCCce-EEEecCCCceeeeeecccCCchhhh
Confidence            9999999999998 99999999997 44444    5789999999999999998 9999999999999999999999999


Q ss_pred             ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305         198 KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN  277 (334)
Q Consensus       198 ~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  277 (334)
                      .+|-+.|.|+.|+|+..|+++|+ .|.++++||..+ +..++.|.+|  ..++.+++|||+|++|++|+.||.|++||+.
T Consensus       532 aghlsDV~cv~FHPNs~Y~aTGS-sD~tVRlWDv~~-G~~VRiF~GH--~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  532 AGHLSDVDCVSFHPNSNYVATGS-SDRTVRLWDVST-GNSVRIFTGH--KGPVTALAFSPCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             cccccccceEEECCcccccccCC-CCceEEEEEcCC-CcEEEEecCC--CCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence            99999999999999999999999 999999999998 8889999987  7789999999999999999999999999999


Q ss_pred             CCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         278 TSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      ++            +.+..+.+|.+.|.++.|  +.+|    ..||+||.|.+|.
T Consensus       608 ~~------------~~v~~l~~Ht~ti~SlsF--S~dg----~vLasgg~DnsV~  644 (707)
T KOG0263|consen  608 NG------------SLVKQLKGHTGTIYSLSF--SRDG----NVLASGGADNSVR  644 (707)
T ss_pred             CC------------cchhhhhcccCceeEEEE--ecCC----CEEEecCCCCeEE
Confidence            98            788999999999999999  9999    9999999999885

>KOG0319|consensus

Probab=100.00  E-value=2e-37  Score=259.97  Aligned_cols=280  Identities=19%  Similarity=0.203  Sum_probs=236.7

Q ss_pred             CceeEEEE-cCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDE-APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~-sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      |.|..++| .|+.++||+++..+.+|+|++.+...                .+-.+|.+.|.++.-       ..+|.+|
T Consensus       324 dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------------~ii~GH~e~vlSL~~-------~~~g~ll  380 (775)
T KOG0319|consen  324 DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC----------------QIIPGHTEAVLSLDV-------WSSGDLL  380 (775)
T ss_pred             hhheeeeecCCccceEEEEeCCCceEEEecCCCce----------------EEEeCchhheeeeee-------cccCcEE
Confidence            45777777 57889999999999999998887664                244457788888762       3467899


Q ss_pred             EEeeCCCcEEEEeCCCCee----eEEEcCccccccccceeEEEEcCCC-CEEEEee-CCcEEEEEcCCCCCeeeeecc--
Q psy2305          81 LCSSMYAPIHLWDSVGGEI----KATYRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFSTDRPGRECVSRNL--  152 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~--  152 (334)
                      ++|+.|.++++|.++++..    +....+|.+     .|.+++++..+ .+|++++ |+++++|++...........+  
T Consensus       381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~-----svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~  455 (775)
T KOG0319|consen  381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTN-----SVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC  455 (775)
T ss_pred             EEecCCceEEEEEecCCcchhhhhhhhccccc-----ccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence            9999999999998854432    233344443     88999998766 4667777 999999999851111111000  


Q ss_pred             --cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         153 --KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       153 --~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                        ....|...|++++++|+.+ ++|||+.|.+.+||++++.....++.+|...|.++.|+|..+.+++++ .|++|+||.
T Consensus       456 ~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S-gD~TvKIW~  533 (775)
T KOG0319|consen  456 RYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS-GDKTVKIWS  533 (775)
T ss_pred             hHHHHhhcccccceEecCCCc-eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc-CCceEEEEE
Confidence              3457999999999999999 999999999999999999999999999999999999999999999999 899999999


Q ss_pred             ccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeec
Q psy2305         231 LRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWK  310 (334)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  310 (334)
                      +.+ ..+++++.+|  ...+..+.|-.+|+.|++++.||-|++|++.++            +++..+.+|.+.|++++- 
T Consensus       534 is~-fSClkT~eGH--~~aVlra~F~~~~~qliS~~adGliKlWnikt~------------eC~~tlD~H~DrvWaL~~-  597 (775)
T KOG0319|consen  534 IST-FSCLKTFEGH--TSAVLRASFIRNGKQLISAGADGLIKLWNIKTN------------ECEMTLDAHNDRVWALSV-  597 (775)
T ss_pred             ecc-ceeeeeecCc--cceeEeeeeeeCCcEEEeccCCCcEEEEeccch------------hhhhhhhhccceeEEEee-
Confidence            998 8889999998  677888999999999999999999999999998            889999999999999999 


Q ss_pred             cCCCcccceeeEEeeecceeee
Q psy2305         311 HHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       311 ~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                       +|..    .+++||+.||.|.
T Consensus       598 -~~~~----~~~~tgg~Dg~i~  614 (775)
T KOG0319|consen  598 -SPLL----DMFVTGGGDGRII  614 (775)
T ss_pred             -cCcc----ceeEecCCCeEEE
Confidence             9999    9999999999985

>KOG0284|consensus

Probab=100.00  E-value=3.4e-38  Score=247.70  Aligned_cols=241  Identities=18%  Similarity=0.232  Sum_probs=212.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|+++.|+++|.++++|..+|.|++|+..-....               .+..+|...|.+++|       +|+...++
T Consensus       139 s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk---------------~~~ahh~eaIRdlaf-------SpnDskF~  196 (464)
T KOG0284|consen  139 SPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK---------------IIQAHHAEAIRDLAF-------SPNDSKFL  196 (464)
T ss_pred             ccceeEEEccCCCEEEEcCCCceEEecccchhhhH---------------HhhHhhhhhhheecc-------CCCCceeE
Confidence            57999999999999999999999999998766553               677788889988777       66888899


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.||+|+|||....+....+.+|+-     .|.+++|+|...++++++ |+.|++||.++ +..+.    ++.+|+..
T Consensus       197 t~SdDg~ikiWdf~~~kee~vL~GHgw-----dVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~----tlh~HKnt  266 (464)
T KOG0284|consen  197 TCSDDGTIKIWDFRMPKEERVLRGHGW-----DVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLA----TLHGHKNT  266 (464)
T ss_pred             EecCCCeEEEEeccCCchhheeccCCC-----CcceeccCCccceeEEccCCceeEeecCCC-cchhh----hhhhccce
Confidence            999999999999988888888888776     899999999999999998 99999999998 66665    68899999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccC-CcEEEeeecCCCeEEEEEccCCCccce
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN-GILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                      |..+.|+|+++ +|++++.|..+++||+++.+.++++++|...++++.|+|- ..+|.+|+ .||.|..|.+.. ..++.
T Consensus       267 Vl~~~f~~n~N-~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg-~Dgsvvh~~v~~-~~p~~  343 (464)
T KOG0284|consen  267 VLAVKFNPNGN-WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG-SDGSVVHWVVGL-EEPLG  343 (464)
T ss_pred             EEEEEEcCCCC-eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc-CCCceEEEeccc-ccccc
Confidence            99999999997 9999999999999999999999999999999999999994 45777888 899999999985 44444


Q ss_pred             eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         240 TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      .+. ..+...+++++|+|=|.+|++|+.|.++++|.-..
T Consensus       344 ~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  344 EIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             CCC-cccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence            443 33578899999999999999999999999996543

>KOG1407|consensus

Probab=100.00  E-value=4.2e-36  Score=223.11  Aligned_cols=273  Identities=19%  Similarity=0.216  Sum_probs=228.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|.+++|+.+|..|++|+.|+++.+|+++..+...             ..-..+|.+.|-.++|.|.      ....++
T Consensus        21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-------------~~~~~gh~~svdql~w~~~------~~d~~a   81 (313)
T KOG1407|consen   21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-------------ELVYRGHTDSVDQLCWDPK------HPDLFA   81 (313)
T ss_pred             hcceEEEEcccCceeeecccCCceEEEEecchhhhh-------------hhcccCCCcchhhheeCCC------CCcceE
Confidence            468899999999999999999999999998875431             1222345678889999764      556899


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.|..|++||+..+++...+....      .=..+.|+|+|+++++++ |..|.+.|.++ .+...     .......
T Consensus        82 tas~dk~ir~wd~r~~k~~~~i~~~~------eni~i~wsp~g~~~~~~~kdD~it~id~r~-~~~~~-----~~~~~~e  149 (313)
T KOG1407|consen   82 TASGDKTIRIWDIRSGKCTARIETKG------ENINITWSPDGEYIAVGNKDDRITFIDART-YKIVN-----EEQFKFE  149 (313)
T ss_pred             EecCCceEEEEEeccCcEEEEeeccC------cceEEEEcCCCCEEEEecCcccEEEEEecc-cceee-----hhcccce
Confidence            99999999999999999988776544      234789999999999998 99999999986 33332     3344567


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      +..+.|+-++. +++.....|+|.|.....-++++++++|.....|+.|+|+|++|++|+ .|..+.+||+.. -.+++.
T Consensus       150 ~ne~~w~~~nd-~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs-ADAlvSLWD~~E-LiC~R~  226 (313)
T KOG1407|consen  150 VNEISWNNSND-LFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS-ADALVSLWDVDE-LICERC  226 (313)
T ss_pred             eeeeeecCCCC-EEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecc-ccceeeccChhH-hhhhee
Confidence            88899997777 777666679999999999999999999999999999999999999999 999999999987 666777


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV  320 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~  320 (334)
                      +...  .-++..+.||.+|++||++++|..|-|=++++|            ..+..++ +.++...++|  +|..    .
T Consensus       227 isRl--dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG------------d~~~eI~-~~~~t~tVAW--HPk~----~  285 (313)
T KOG1407|consen  227 ISRL--DWPVRTLSFSHDGRMLASASEDHFIDIAEVETG------------DRVWEIP-CEGPTFTVAW--HPKR----P  285 (313)
T ss_pred             eccc--cCceEEEEeccCcceeeccCccceEEeEecccC------------CeEEEee-ccCCceeEEe--cCCC----c
Confidence            7765  667888999999999999999999999999999            4455554 5778899999  9999    9


Q ss_pred             eEEeeecce
Q psy2305         321 ADATCSGQI  329 (334)
Q Consensus       321 ~l~t~~~d~  329 (334)
                      +||.+++|.
T Consensus       286 LLAyA~ddk  294 (313)
T KOG1407|consen  286 LLAYACDDK  294 (313)
T ss_pred             eeeEEecCC
Confidence            999988763

>KOG0291|consensus

Probab=100.00  E-value=2e-35  Score=248.63  Aligned_cols=232  Identities=17%  Similarity=0.253  Sum_probs=209.2

Q ss_pred             cceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCee
Q psy2305          70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGREC  147 (334)
Q Consensus        70 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~  147 (334)
                      +.+|++..+.|+++-..|...+|.+..-.++..+....+     +|..++|+..|.+|+.|+  -|.+-+|+... ...+
T Consensus       270 aa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~-----~I~t~~~N~tGDWiA~g~~klgQLlVweWqs-EsYV  343 (893)
T KOG0291|consen  270 AAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ-----KILTVSFNSTGDWIAFGCSKLGQLLVWEWQS-ESYV  343 (893)
T ss_pred             eeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc-----eeeEEEecccCCEEEEcCCccceEEEEEeec-ccee
Confidence            345577888999999999999999999999988887666     899999999999999886  47999999986 3333


Q ss_pred             eeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEE
Q psy2305         148 VSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEII  227 (334)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~  227 (334)
                      .    ...+|...+++++++|||+ ++++|++||.|++||..++-+..+|..|...|+.+.|+..|+.+++++ .||+++
T Consensus       344 l----KQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS-LDGtVR  417 (893)
T KOG0291|consen  344 L----KQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS-LDGTVR  417 (893)
T ss_pred             e----eccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee-cCCeEE
Confidence            3    5789999999999999999 999999999999999999999999999999999999999999999999 999999


Q ss_pred             EEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC-cEEEEeCCCCCCCCCCCccccccccceecccccccce
Q psy2305         228 CWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG-DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG  306 (334)
Q Consensus       228 iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  306 (334)
                      .||+.. ....+++... .+.+..+++..|.|.++++|+.|. .|++|++++|            +.+..+.+|+++|.+
T Consensus       418 AwDlkR-YrNfRTft~P-~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG------------qllDiLsGHEgPVs~  483 (893)
T KOG0291|consen  418 AWDLKR-YRNFRTFTSP-EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG------------QLLDILSGHEGPVSG  483 (893)
T ss_pred             eeeecc-cceeeeecCC-CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC------------eeeehhcCCCCccee
Confidence            999998 6777888755 456677889999999999999885 6999999999            788999999999999


Q ss_pred             eeeccCCCcccceeeEEeeecceeeee
Q psy2305         307 VRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       307 ~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ++|  +|++    ..||++|+|.+|++
T Consensus       484 l~f--~~~~----~~LaS~SWDkTVRi  504 (893)
T KOG0291|consen  484 LSF--SPDG----SLLASGSWDKTVRI  504 (893)
T ss_pred             eEE--cccc----CeEEeccccceEEE
Confidence            999  9999    99999999999986

>KOG0275|consensus

Probab=100.00  E-value=8.9e-38  Score=239.32  Aligned_cols=284  Identities=12%  Similarity=0.125  Sum_probs=237.9

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      +.|..|||||+||++|+.||-|.+||..+++....+.....      ..+- -+..+|.+++|       |.|...|++|
T Consensus       216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq------d~fM-Mmd~aVlci~F-------SRDsEMlAsG  281 (508)
T KOG0275|consen  216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ------DNFM-MMDDAVLCISF-------SRDSEMLASG  281 (508)
T ss_pred             hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh------ccee-ecccceEEEee-------cccHHHhhcc
Confidence            67899999999999999999999999999886521111100      1111 24467777666       7799999999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      +.||.|++|.+.+|.+++.|.. .|..   .|+++.|+.|+..+++++ |.++++.-+.. ++.+.    .+.+|...|+
T Consensus       282 sqDGkIKvWri~tG~ClRrFdr-AHtk---Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK~LK----EfrGHsSyvn  352 (508)
T KOG0275|consen  282 SQDGKIKVWRIETGQCLRRFDR-AHTK---GVTCLSFSRDNSQILSASFDQTVRIHGLKS-GKCLK----EFRGHSSYVN  352 (508)
T ss_pred             CcCCcEEEEEEecchHHHHhhh-hhcc---CeeEEEEccCcchhhcccccceEEEecccc-chhHH----HhcCcccccc
Confidence            9999999999999999998873 2333   899999999999999887 99999999997 77776    6899999999


Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc--CCCCeEEEEEcc-CCcEEEeeecCCCeEEEEEccCCCccce
Q psy2305         163 AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG--HNGGITHLEFSS-NGILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                      ...|.++|. .+++++.||+|++|+..+.+++.+++.  ...+|.++..-| +...++++. ..+++++.++.  ++.++
T Consensus       353 ~a~ft~dG~-~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~q--GQvVr  428 (508)
T KOG0275|consen  353 EATFTDDGH-HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQ--GQVVR  428 (508)
T ss_pred             ceEEcCCCC-eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEecc--ceEEe
Confidence            999999999 999999999999999999999988864  345778887777 445788888 79999999987  77777


Q ss_pred             eecc-cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305         240 TFPR-QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL  318 (334)
Q Consensus       240 ~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~  318 (334)
                      .+.. ....+...+...||.|.++.+.++|+.++.|.+.++            +....+.-|+..+..++-  +|..   
T Consensus       429 sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG------------~LE~tl~VhEkdvIGl~H--HPHq---  491 (508)
T KOG0275|consen  429 SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG------------KLERTLPVHEKDVIGLTH--HPHQ---  491 (508)
T ss_pred             eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC------------ceeeeeeccccccccccc--Cccc---
Confidence            7753 334555666778999999999999999999999999            667788889999999999  9999   


Q ss_pred             eeeEEeeecceeee
Q psy2305         319 LVADATCSGQITNV  332 (334)
Q Consensus       319 ~~~l~t~~~d~~i~  332 (334)
                       +.||+-++||.++
T Consensus       492 -NllAsYsEDgllK  504 (508)
T KOG0275|consen  492 -NLLASYSEDGLLK  504 (508)
T ss_pred             -chhhhhcccchhh
Confidence             9999999999876

>KOG0277|consensus

Probab=100.00  E-value=8e-36  Score=220.80  Aligned_cols=281  Identities=14%  Similarity=0.206  Sum_probs=224.2

Q ss_pred             eEEEEcCC-CcEEEEee-------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC
Q psy2305           5 EDVDEAPD-GTCLLTNS-------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF   76 (334)
Q Consensus         5 ~~~~~sp~-~~~l~~~~-------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~   76 (334)
                      +++.|||- .++||++.       ..|++.|.++...+.+.             ......-...+++++|++.      .
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~-------------e~~s~d~~D~LfdV~Wse~------~   72 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ-------------ECQSYDTEDGLFDVAWSEN------H   72 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeE-------------EEEeeecccceeEeeecCC------C
Confidence            47899992 33454432       46899999986444331             1222234567999999763      3


Q ss_pred             CcEEEEeeCCCcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeeccc
Q psy2305          77 TSYFLCSSMYAPIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        77 ~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      .+.+++++.||++++||+.. ...+..++.|..     .|.++.|++..+ .+++++ |++|++|+... .+.+.    +
T Consensus        73 e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~-----EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r-~~Sv~----T  142 (311)
T KOG0277|consen   73 ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKR-----EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR-PNSVQ----T  142 (311)
T ss_pred             cceEEEEecCceEEEeccCCCCcchhHHHhhhh-----heEEeccccccceeEEeeccCCceEeecCCC-CcceE----e
Confidence            45688888899999999643 235666776555     899999999654 455667 99999999987 45555    6


Q ss_pred             ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEcc-CCcEEEeeecCCCeEEEEEcc
Q psy2305         154 PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSS-NGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      +.+|...|...+|+|...+++++++.|+.+++||++.......+..|...|.++.|+. +...|++|+ .|+.|+.||++
T Consensus       143 f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~-vd~~vr~wDir  221 (311)
T KOG0277|consen  143 FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG-VDNLVRGWDIR  221 (311)
T ss_pred             ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC-CCceEEEEehh
Confidence            8999999999999999888999999999999999987655555889999999999987 556888898 89999999999


Q ss_pred             CCCccceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeecc
Q psy2305         233 NPGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKH  311 (334)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  311 (334)
                      +-..++.++.+|  .-.+..+.|||.. ..|++++.|-+++|||...+.           ..+.+...|..-+..+.|  
T Consensus       222 ~~r~pl~eL~gh--~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-----------s~~e~~~~HtEFv~g~Dw--  286 (311)
T KOG0277|consen  222 NLRTPLFELNGH--GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-----------SAIETVDHHTEFVCGLDW--  286 (311)
T ss_pred             hccccceeecCC--ceEEEEEecCcchhhHhhhccccceEEecccccch-----------hhhhhhhccceEEecccc--
Confidence            878888888776  6678899999965 688999999999999998764           456667788899999999  


Q ss_pred             CCCcccceeeEEeeecceeeee
Q psy2305         312 HKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       312 s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ++-.+   .++|+++.|+.+++
T Consensus       287 s~~~~---~~vAs~gWDe~l~V  305 (311)
T KOG0277|consen  287 SLFDP---GQVASTGWDELLYV  305 (311)
T ss_pred             ccccC---ceeeecccccceee
Confidence            87643   78999999999986

>KOG0313|consensus

Probab=100.00  E-value=8e-36  Score=232.42  Aligned_cols=281  Identities=21%  Similarity=0.282  Sum_probs=223.8

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|.++...  ++.+++|++||.+++||......                ....+|.++|.+++|...    ++....|++
T Consensus       107 WVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~----------------~~~~Ght~~ik~v~~v~~----n~~~~~fvs  164 (423)
T KOG0313|consen  107 WVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI----------------KTIVGHTGPIKSVAWVIK----NSSSCLFVS  164 (423)
T ss_pred             hhhhhccc--CceEEEeecCCeeEEEecCCceE----------------EEEecCCcceeeeEEEec----CCccceEEE
Confidence            34445444  67899999999999999876654                234457799999998532    444457999


Q ss_pred             eeCCCcEEEEeCCCCeeeEE----EcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCC-Cee---------
Q psy2305          83 SSMYAPIHLWDSVGGEIKAT----YRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPG-REC---------  147 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~-~~~---------  147 (334)
                      ++.|.++++|..+.++....    .++|..     .|-++...++|..+++|+ |..+.+|+..+.. ...         
T Consensus       165 as~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~-----~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk  239 (423)
T KOG0313|consen  165 ASMDQTLRLWKWNVGENKVKALKVCRGHKR-----SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK  239 (423)
T ss_pred             ecCCceEEEEEecCchhhhhHHhHhccccc-----ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhh
Confidence            99999999998877654322    223332     899999999999999998 9999999933210 000         


Q ss_pred             ----------eeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEE
Q psy2305         148 ----------VSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF  217 (334)
Q Consensus       148 ----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  217 (334)
                                ......+.+|..+|.++.|++.+  .+++++.|.+|+.||+.++..+.++.+ ...+.++.++|..++|+
T Consensus       240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~  316 (423)
T KOG0313|consen  240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLA  316 (423)
T ss_pred             hhhhhhcccccCceEEecccccceeeEEEcCCC--ceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceee
Confidence                      00011578999999999999944  799999999999999999999888874 56789999999999999


Q ss_pred             eeecCCCeEEEEEccCCCc--cceeecccccCCceEEEEecCCCc-eEEeeecCCcEEEEeCCCCCCCCCCCcccccccc
Q psy2305         218 SGARKDCEIICWDLRNPGC--ILHTFPRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL  294 (334)
Q Consensus       218 ~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  294 (334)
                      +|+ .|..|++||.++...  ...++.+|  ...+.++.|+|... .|++++.|+++++||+++..           .++
T Consensus       317 ~gs-sdr~irl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k-----------~pl  382 (423)
T KOG0313|consen  317 SGS-SDRHIRLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK-----------APL  382 (423)
T ss_pred             ecC-CCCceeecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCC-----------Ccc
Confidence            999 899999999997443  34556666  66899999999764 57889999999999999973           489


Q ss_pred             ceecccccccceeeeccCCCcccceeeEEeeecceeeeeC
Q psy2305         295 YKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVKQ  334 (334)
Q Consensus       295 ~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~~  334 (334)
                      +.+.+|.+.|.++.|  .. +    ..|++||.|.+++|+
T Consensus       383 ydI~~h~DKvl~vdW--~~-~----~~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  383 YDIAGHNDKVLSVDW--NE-G----GLIVSGGADNKLRIF  415 (423)
T ss_pred             eeeccCCceEEEEec--cC-C----ceEEeccCcceEEEe
Confidence            999999999999999  54 4    589999999999985

>KOG0266|consensus

Probab=100.00  E-value=2.5e-35  Score=254.14  Aligned_cols=245  Identities=20%  Similarity=0.281  Sum_probs=207.8

Q ss_pred             eeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCCCCEEEE
Q psy2305          52 TLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGNKIYA  129 (334)
Q Consensus        52 ~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  129 (334)
                      .+..++...|.++.       |+++|+.+++++.++.+++|+..+.+  ....+..|..     .|..++|+|+++++++
T Consensus       153 ~~~~~~~~sv~~~~-------fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~-----~v~~~~fs~d~~~l~s  220 (456)
T KOG0266|consen  153 TLAGHECPSVTCVD-------FSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR-----GVSDVAFSPDGSYLLS  220 (456)
T ss_pred             eecccccCceEEEE-------EcCCCCeEEEccCCCcEEEeecccccchhhcccccccc-----ceeeeEECCCCcEEEE
Confidence            33344445565544       48899999999999999999997777  5555555444     8999999999999999


Q ss_pred             ee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEE
Q psy2305         130 GF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE  208 (334)
Q Consensus       130 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  208 (334)
                      ++ |+++++||+...+..++    .+.+|...|++++|+|+++ ++++|+.|++|++||+++++++..+.+|.+.|++++
T Consensus       221 ~s~D~tiriwd~~~~~~~~~----~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~  295 (456)
T KOG0266|consen  221 GSDDKTLRIWDLKDDGRNLK----TLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLA  295 (456)
T ss_pred             ecCCceEEEeeccCCCeEEE----EecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEE
Confidence            98 99999999965345555    6889999999999999997 999999999999999999999999999999999999


Q ss_pred             EccCCcEEEeeecCCCeEEEEEccCCCc--cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCC
Q psy2305         209 FSSNGILLFSGARKDCEIICWDLRNPGC--ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPY  286 (334)
Q Consensus       209 ~~~~~~~l~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  286 (334)
                      |++++++|++++ .|+.|++||+.+ +.  +...+..+.....+..+.|+|++++++++..|+.+++||+..+       
T Consensus       296 f~~d~~~l~s~s-~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~-------  366 (456)
T KOG0266|consen  296 FSPDGNLLVSAS-YDGTIRVWDLET-GSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG-------  366 (456)
T ss_pred             ECCCCCEEEEcC-CCccEEEEECCC-CceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC-------
Confidence            999999999999 899999999998 55  3455655533326788999999999999999999999999998       


Q ss_pred             ccccccccceeccccc---ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         287 EESVQEPLYKFSAHQD---CTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       287 ~~~~~~~~~~~~~~~~---~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                           .....+.+|..   .+.+...  ++.+    +++++++.|+.|++
T Consensus       367 -----~~~~~~~~~~~~~~~~~~~~~--~~~~----~~i~sg~~d~~v~~  405 (456)
T KOG0266|consen  367 -----KSVGTYTGHSNLVRCIFSPTL--STGG----KLIYSGSEDGSVYV  405 (456)
T ss_pred             -----cceeeecccCCcceeEecccc--cCCC----CeEEEEeCCceEEE
Confidence                 67777777776   3455556  7888    99999999999875

>KOG0295|consensus

Probab=100.00  E-value=8e-36  Score=231.25  Aligned_cols=240  Identities=21%  Similarity=0.332  Sum_probs=211.2

Q ss_pred             CCceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           1 MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         1 ~d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      .++|..++|+..|++||+++.|=.+++||.++....              ......|...|.++.|.|       .|.+|
T Consensus       150 t~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c--------------~ks~~gh~h~vS~V~f~P-------~gd~i  208 (406)
T KOG0295|consen  150 TDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRC--------------IKSLIGHEHGVSSVFFLP-------LGDHI  208 (406)
T ss_pred             ccceeEEEEecCccEEEecCCccchhheeHHHHHHH--------------HHHhcCcccceeeEEEEe-------cCCee
Confidence            367999999999999999999988999999874221              122234567888888855       68999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +++++|.+|+.|++.+|.++.++.++..     .|..++.+.||.++++++ |.++++|-+.+ . .+..   .+..|+.
T Consensus       209 lS~srD~tik~We~~tg~cv~t~~~h~e-----wvr~v~v~~DGti~As~s~dqtl~vW~~~t-~-~~k~---~lR~hEh  278 (406)
T KOG0295|consen  209 LSCSRDNTIKAWECDTGYCVKTFPGHSE-----WVRMVRVNQDGTIIASCSNDQTLRVWVVAT-K-QCKA---ELREHEH  278 (406)
T ss_pred             eecccccceeEEecccceeEEeccCchH-----hEEEEEecCCeeEEEecCCCceEEEEEecc-c-hhhh---hhhcccc
Confidence            9999999999999999999999998766     899999999999999998 99999999985 3 3332   6789999


Q ss_pred             ceEEEEEcCC---------------CCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305         160 IVSAIAINPV---------------HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       160 ~v~~~~~~~~---------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                      +|-+++|.|.               ++ ++.+++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++. +|+
T Consensus       279 ~vEci~wap~~~~~~i~~at~~~~~~~-~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-DDk  356 (406)
T KOG0295|consen  279 PVECIAWAPESSYPSISEATGSTNGGQ-VLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-DDK  356 (406)
T ss_pred             ceEEEEecccccCcchhhccCCCCCcc-EEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe-cCC
Confidence            9999999774               24 899999999999999999999999999999999999999999999999 999


Q ss_pred             eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305         225 EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       225 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  276 (334)
                      ++++||+++ ++++..+..|  ...+.+++|+.+..++++|+-|.++++|.-
T Consensus       357 tlrvwdl~~-~~cmk~~~ah--~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  357 TLRVWDLKN-LQCMKTLEAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cEEEEEecc-ceeeeccCCC--cceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999998 8888888866  778889999999999999999999999974

>KOG0319|consensus

Probab=100.00  E-value=1.2e-35  Score=249.43  Aligned_cols=284  Identities=14%  Similarity=0.166  Sum_probs=221.1

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .||.-++|+|.|..|++|+.|+.|+|||+..+...              ..+++ |++.|..+.|+|     ++....|+
T Consensus       106 ~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t--------------h~fkG-~gGvVssl~F~~-----~~~~~lL~  165 (775)
T KOG0319|consen  106 APVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT--------------HSFKG-HGGVVSSLLFHP-----HWNRWLLA  165 (775)
T ss_pred             CCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE--------------EEecC-CCceEEEEEeCC-----ccchhhee
Confidence            47889999999999999999999999999998876              56664 678999999988     44556799


Q ss_pred             EeeCCCcEEEEeCCCCee-eEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecc-------
Q psy2305          82 CSSMYAPIHLWDSVGGEI-KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNL-------  152 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-------  152 (334)
                      +|..|+.+++||+.+... +.....|..     .|++++|++|+..+++++ |..+.+||+.+ .+.....|+       
T Consensus       166 sg~~D~~v~vwnl~~~~tcl~~~~~H~S-----~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~-~~~l~~lp~ye~~E~v  239 (775)
T KOG0319|consen  166 SGATDGTVRVWNLNDKRTCLHTMILHKS-----AVTSLAFSEDSLELLSVGRDKVIIVWDLVQ-YKKLKTLPLYESLESV  239 (775)
T ss_pred             ecCCCceEEEEEcccCchHHHHHHhhhh-----heeeeeeccCCceEEEeccCcEEEEeehhh-hhhhheechhhheeeE
Confidence            999999999999986554 444555444     889999999988887776 88888888743 100000000       


Q ss_pred             --------------------------------------------------------------------------------
Q psy2305         153 --------------------------------------------------------------------------------  152 (334)
Q Consensus       153 --------------------------------------------------------------------------------  152 (334)
                                                                                                      
T Consensus       240 v~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i  319 (775)
T KOG0319|consen  240 VRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI  319 (775)
T ss_pred             EEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence                                                                                            


Q ss_pred             ----------------------------------------cccccccceEEEEEcCCCC---------------------
Q psy2305         153 ----------------------------------------KPWFRKNIVSAIAINPVHP---------------------  171 (334)
Q Consensus       153 ----------------------------------------~~~~~~~~v~~~~~~~~~~---------------------  171 (334)
                                                              .+.+|+..|.++....+|.                     
T Consensus       320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~  399 (775)
T KOG0319|consen  320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS  399 (775)
T ss_pred             cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence                                                    2334555555555333333                     


Q ss_pred             -------------------------cEEEEeecCCeEEEEECCCCCc-----e----EeeccCCCCeEEEEEccCCcEEE
Q psy2305         172 -------------------------DICALGTYSKIIGLFSDSDGRP-----L----FFLKGHNGGITHLEFSSNGILLF  217 (334)
Q Consensus       172 -------------------------~~l~~~~~dg~i~i~d~~~~~~-----~----~~~~~~~~~i~~~~~~~~~~~l~  217 (334)
                                               .+|++++.|+++++|++...+.     .    .+...|...|++++++|+.++++
T Consensus       400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA  479 (775)
T KOG0319|consen  400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA  479 (775)
T ss_pred             hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEE
Confidence                                     3444444444555555433110     0    12246889999999999999999


Q ss_pred             eeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee
Q psy2305         218 SGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF  297 (334)
Q Consensus       218 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  297 (334)
                      +|+ .|++.+||++.. ......+.+|  ...++++.|+|..+.+++++.|++|+||.+.+.            .+++++
T Consensus       480 T~S-qDktaKiW~le~-~~l~~vLsGH--~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f------------SClkT~  543 (775)
T KOG0319|consen  480 TGS-QDKTAKIWDLEQ-LRLLGVLSGH--TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF------------SCLKTF  543 (775)
T ss_pred             ecc-cccceeeecccC-ceEEEEeeCC--ccceEEEEeccccceeEeccCCceEEEEEeccc------------eeeeee
Confidence            999 999999999995 7888899988  667899999999999999999999999999998            899999


Q ss_pred             cccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         298 SAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       298 ~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+|...|..+.|  -.++    ..|++|+.||.+|+
T Consensus       544 eGH~~aVlra~F--~~~~----~qliS~~adGliKl  573 (775)
T KOG0319|consen  544 EGHTSAVLRASF--IRNG----KQLISAGADGLIKL  573 (775)
T ss_pred             cCccceeEeeee--eeCC----cEEEeccCCCcEEE
Confidence            999999999999  9999    99999999999986

>KOG0285|consensus

Probab=100.00  E-value=1.9e-35  Score=228.89  Aligned_cols=239  Identities=16%  Similarity=0.209  Sum_probs=213.5

Q ss_pred             eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305          51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG  130 (334)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (334)
                      ..+.+ |.+.|.++++       .|.+++|++|+.|++|+|||+.+|++..++.+|..     .|..+++|+-..||+++
T Consensus       145 rVi~g-HlgWVr~vav-------dP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~-----~vr~vavS~rHpYlFs~  211 (460)
T KOG0285|consen  145 RVISG-HLGWVRSVAV-------DPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE-----TVRGVAVSKRHPYLFSA  211 (460)
T ss_pred             hhhhh-ccceEEEEee-------CCCceeEEecCCCceeEEEEcccCeEEEeecchhh-----eeeeeeecccCceEEEe
Confidence            44443 5577776655       77899999999999999999999999999988665     89999999999999988


Q ss_pred             e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEE
Q psy2305         131 F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEF  209 (334)
Q Consensus       131 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  209 (334)
                      + |+.|+.||++. .+.++    .+.+|-..|.|++.+|.-+ .|++|+.|.++++||+++...+..+.+|..+|.++.+
T Consensus       212 gedk~VKCwDLe~-nkvIR----~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~  285 (460)
T KOG0285|consen  212 GEDKQVKCWDLEY-NKVIR----HYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC  285 (460)
T ss_pred             cCCCeeEEEechh-hhhHH----HhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEe
Confidence            7 99999999996 55555    6899999999999999999 9999999999999999999999999999999999999


Q ss_pred             ccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccc
Q psy2305         210 SSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEES  289 (334)
Q Consensus       210 ~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  289 (334)
                      .|-...+++|+ .|++|++||++. ++....+..|  ...+.+++.+|....+|+++.|. |+-|++..+          
T Consensus       286 ~~~dpqvit~S-~D~tvrlWDl~a-gkt~~tlt~h--kksvral~lhP~e~~fASas~dn-ik~w~~p~g----------  350 (460)
T KOG0285|consen  286 QPTDPQVITGS-HDSTVRLWDLRA-GKTMITLTHH--KKSVRALCLHPKENLFASASPDN-IKQWKLPEG----------  350 (460)
T ss_pred             ecCCCceEEec-CCceEEEeeecc-CceeEeeecc--cceeeEEecCCchhhhhccCCcc-ceeccCCcc----------
Confidence            99888999999 999999999998 7777777766  67788899999999999999875 999999998          


Q ss_pred             cccccceecccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         290 VQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       290 ~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                        ..+..+.+|...|+.++.  ..|+     ++++|+++|.+.
T Consensus       351 --~f~~nlsgh~~iintl~~--nsD~-----v~~~G~dng~~~  384 (460)
T KOG0285|consen  351 --EFLQNLSGHNAIINTLSV--NSDG-----VLVSGGDNGSIM  384 (460)
T ss_pred             --chhhccccccceeeeeee--ccCc-----eEEEcCCceEEE
Confidence              677889999999999999  8887     889999999874

>KOG0278|consensus

Probab=100.00  E-value=2.7e-36  Score=222.91  Aligned_cols=274  Identities=17%  Similarity=0.188  Sum_probs=235.3

Q ss_pred             CceeEEEEcC---CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc
Q psy2305           2 DIEEDVDEAP---DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         2 d~V~~~~~sp---~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      .+|-.++|||   +|-+|++++.|+.-.+-+-+++..+              .++.+ |.+.|++...       +.+..
T Consensus        15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi--------------gtfeg-hkgavw~~~l-------~~na~   72 (334)
T KOG0278|consen   15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI--------------GTFEG-HKGAVWSATL-------NKNAT   72 (334)
T ss_pred             cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE--------------Eeeec-cCcceeeeec-------Cchhh
Confidence            4788999986   8989999999998888888888876              56765 4577777555       44666


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      .-++++.|-+-++||.-+|..+..|+ |.|     -|..++|+.|.++|++|+ +..+++||++.+..+..    .+.+|
T Consensus        73 ~aasaaadftakvw~a~tgdelhsf~-hkh-----ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~----E~~gh  142 (334)
T KOG0278|consen   73 RAASAAADFTAKVWDAVTGDELHSFE-HKH-----IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK----EISGH  142 (334)
T ss_pred             hhhhhcccchhhhhhhhhhhhhhhhh-hhh-----eeeeEEecccchhhhccchHHHhhhhhccCCCCCch----hhcCC
Confidence            67888999999999999999988886 345     799999999999999998 99999999998666555    68999


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI  237 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~  237 (334)
                      .+.|..+.|....+ .|++..+|++|++||.++++.++++. ...+|+++.++++|++|.++  ..+.|.+||..+ -.+
T Consensus       143 tg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaks-f~~  217 (334)
T KOG0278|consen  143 TGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKS-FGL  217 (334)
T ss_pred             CCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe--cCceeEEecccc-ccc
Confidence            99999999999888 88888999999999999999999997 56789999999999887665  488999999998 555


Q ss_pred             ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee-cccccccceeeeccCCCcc
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF-SAHQDCTNGVRWKHHKFER  316 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~s~~~~  316 (334)
                      ++.++.   +..+.+..++|+...+++|++|..++.||..++            +.+..+ ++|.++|.++.|  +|+| 
T Consensus       218 lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg------------eEi~~~nkgh~gpVhcVrF--SPdG-  279 (334)
T KOG0278|consen  218 LKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG------------EEIGSYNKGHFGPVHCVRF--SPDG-  279 (334)
T ss_pred             eeeccC---ccccccccccCCCceEEecCcceEEEEEeccCC------------ceeeecccCCCCceEEEEE--CCCC-
Confidence            665553   556777889999999999999999999999999            455554 899999999999  9999 


Q ss_pred             cceeeEEeeecceeeee
Q psy2305         317 DLLVADATCSGQITNVK  333 (334)
Q Consensus       317 ~~~~~l~t~~~d~~i~~  333 (334)
                         ...|+||.||+|.+
T Consensus       280 ---E~yAsGSEDGTirl  293 (334)
T KOG0278|consen  280 ---ELYASGSEDGTIRL  293 (334)
T ss_pred             ---ceeeccCCCceEEE
Confidence               99999999999975

>KOG0643|consensus

Probab=100.00  E-value=6.3e-35  Score=217.58  Aligned_cols=289  Identities=16%  Similarity=0.172  Sum_probs=228.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .+++-+.|+.+|.+|++++.|.+..||--..++..              .++.+ |.+.|+++.-       +-+.+.++
T Consensus        11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--------------Gty~G-HtGavW~~Di-------d~~s~~li   68 (327)
T KOG0643|consen   11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--------------GTYDG-HTGAVWCCDI-------DWDSKHLI   68 (327)
T ss_pred             cccceEEecCCCcEEEEecCCCCceEEEecCCcee--------------eeecC-CCceEEEEEe-------cCCcceee
Confidence            46889999999999999999999999988777766              46665 5688888765       56889999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee------CCcEEEEEcCCCC------Ceeee
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF------LSEVKIFSTDRPG------RECVS  149 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~i~d~~~~~------~~~~~  149 (334)
                      +|+.|.++++||+++|+++..++...      +|..+.|+++|++++...      .+.|.++|++...      .+.. 
T Consensus        69 TGSAD~t~kLWDv~tGk~la~~k~~~------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~-  141 (327)
T KOG0643|consen   69 TGSADQTAKLWDVETGKQLATWKTNS------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL-  141 (327)
T ss_pred             eccccceeEEEEcCCCcEEEEeecCC------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE-
Confidence            99999999999999999999988644      899999999999887653      3679999998422      1222 


Q ss_pred             ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEE
Q psy2305         150 RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIIC  228 (334)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i  228 (334)
                         .+..+...++.+-|.|-++ .|++|.+||.|.+||++++ +.+.+-+.|...|+.++++|+..++++++ .|.+-++
T Consensus       142 ---kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl  216 (327)
T KOG0643|consen  142 ---KIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKL  216 (327)
T ss_pred             ---EecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cCcccee
Confidence               3455678899999999999 9999999999999999998 45566678999999999999999999999 8999999


Q ss_pred             EEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEE--EeCCCCCCCCCCCccccccccceecccccccce
Q psy2305         229 WDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSI--WNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG  306 (334)
Q Consensus       229 wd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  306 (334)
                      ||.++ -..++++.   ...++.+.+++|-...++.|+.....-+  =+.+.++....-..---.+.+..+++|-++|++
T Consensus       217 ~D~~t-l~v~Kty~---te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINs  292 (327)
T KOG0643|consen  217 VDVRT-LEVLKTYT---TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINS  292 (327)
T ss_pred             eeccc-eeeEEEee---ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcce
Confidence            99998 66666665   3567888899998888777654322111  111112110000000112556778899999999


Q ss_pred             eeeccCCCcccceeeEEeeecceeeeeC
Q psy2305         307 VRWKHHKFERDLLVADATCSGQITNVKQ  334 (334)
Q Consensus       307 ~~~~~s~~~~~~~~~l~t~~~d~~i~~~  334 (334)
                      ++|  +|+|    +..++|++||.|.++
T Consensus       293 vAf--hPdG----ksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  293 VAF--HPDG----KSYSSGGEDGYVRLH  314 (327)
T ss_pred             eEE--CCCC----cccccCCCCceEEEE
Confidence            999  9999    999999999999763

>KOG0772|consensus

Probab=100.00  E-value=5.4e-35  Score=236.32  Aligned_cols=295  Identities=18%  Similarity=0.147  Sum_probs=225.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|.++++.|.|.+|++|+.|.+|++||+......-         . -.+.+...+...|.++.|       ++.|..|+
T Consensus       168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~---------~-~fr~l~P~E~h~i~sl~y-------s~Tg~~iL  230 (641)
T KOG0772|consen  168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM---------R-SFRQLQPCETHQINSLQY-------SVTGDQIL  230 (641)
T ss_pred             eEEEEeeecCCCceeeeccccceEEEEecccccccc---------h-hhhccCcccccccceeee-------cCCCCeEE
Confidence            368999999999999999999999999998654320         0 012334445678888888       56788888


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCc-------cccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPY-------NQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      +.+.....+|+|-...+.....++.       +..++...+++.+|+|+.+ .+++++ ||++++||++........+..
T Consensus       231 vvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~  310 (641)
T KOG0772|consen  231 VVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT  310 (641)
T ss_pred             EEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence            8887888999996544444333321       1233445899999999865 344555 999999999874443332211


Q ss_pred             -cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC---ceEeeccCCC--CeEEEEEccCCcEEEeeecCCCeE
Q psy2305         153 -KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR---PLFFLKGHNG--GITHLEFSSNGILLFSGARKDCEI  226 (334)
Q Consensus       153 -~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~~d~~i  226 (334)
                       ...+..-+++.++|+|+|+ +||+|+.||.|.+|+..+..   .+..-.+|..  .|+++.||++|++|++-+ .|+++
T Consensus       311 k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg-~D~tL  388 (641)
T KOG0772|consen  311 KPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG-FDDTL  388 (641)
T ss_pred             ccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc-CCCce
Confidence             1234456789999999999 99999999999999985432   2233356776  899999999999999999 89999


Q ss_pred             EEEEccCCCccceeecccccCCceEEEEecCCCceEEeeec------CCcEEEEeCCCCCCCCCCCccccccccceeccc
Q psy2305         227 ICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT------NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH  300 (334)
Q Consensus       227 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  300 (334)
                      ++||++...+++....+-...-.-..++|||+.++|++|..      .|.+.+||..+-            ..++.+.-.
T Consensus       389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~------------d~v~ki~i~  456 (641)
T KOG0772|consen  389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL------------DTVYKIDIS  456 (641)
T ss_pred             eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce------------eeEEEecCC
Confidence            99999998888887776555555667889999999999864      478999999887            566776666


Q ss_pred             ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         301 QDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ...|..+.|  +|.-    +.|+.++.||++++
T Consensus       457 ~aSvv~~~W--hpkL----NQi~~gsgdG~~~v  483 (641)
T KOG0772|consen  457 TASVVRCLW--HPKL----NQIFAGSGDGTAHV  483 (641)
T ss_pred             CceEEEEee--cchh----hheeeecCCCceEE
Confidence            778999999  9999    89999999999876

>KOG0283|consensus

Probab=100.00  E-value=9.1e-35  Score=247.90  Aligned_cols=253  Identities=18%  Similarity=0.263  Sum_probs=199.4

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCcee---------------------------ee------e-----CCC
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCK---------------------------SV------W-----RPS   43 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~---------------------------~~------~-----~~~   43 (334)
                      .+|+++.||+||+|||+||.|+.|+||.+...+...                           ..      .     ...
T Consensus       268 gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~  347 (712)
T KOG0283|consen  268 GAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPC  347 (712)
T ss_pred             CcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcc
Confidence            689999999999999999999999999987611100                           00      0     001


Q ss_pred             CCC--------CCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccce
Q psy2305          44 NQR--------PKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA  115 (334)
Q Consensus        44 ~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v  115 (334)
                      ..+        +.+...+. +|.+.|.++.|+        .+++|++++.|.+|++|++...++++.|.   |.+   .|
T Consensus       348 ~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWS--------Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~---Hnd---fV  412 (712)
T KOG0283|consen  348 VLLPLKAFVFSEKPFCEFK-GHTADILDLSWS--------KNNFLLSSSMDKTVRLWHPGRKECLKVFS---HND---FV  412 (712)
T ss_pred             ccCCCccccccccchhhhh-ccchhheecccc--------cCCeeEeccccccEEeecCCCcceeeEEe---cCC---ee
Confidence            011        11223334 466788999984        45689999999999999999999999987   444   89


Q ss_pred             eEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc
Q psy2305         116 YSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP  193 (334)
Q Consensus       116 ~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  193 (334)
                      +|++|+| |.+++++|+ |+.++||++.  ...+.    ....-...|++++|.|+|+ ..++|+.+|.+++|+....+.
T Consensus       413 TcVaFnPvDDryFiSGSLD~KvRiWsI~--d~~Vv----~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~  485 (712)
T KOG0283|consen  413 TCVAFNPVDDRYFISGSLDGKVRLWSIS--DKKVV----DWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKL  485 (712)
T ss_pred             EEEEecccCCCcEeecccccceEEeecC--cCeeE----eehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeE
Confidence            9999999 678999999 9999999998  44444    3455568999999999999 999999999999999987766


Q ss_pred             eEeecc--------CCCCeEEEEEccCCc-EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEe
Q psy2305         194 LFFLKG--------HNGGITHLEFSSNGI-LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLS  264 (334)
Q Consensus       194 ~~~~~~--------~~~~i~~~~~~~~~~-~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  264 (334)
                      ...+.-        ....|+++.|.|... .+++.+ .|..|+|||.+. ..++..|++...........|+.||++|++
T Consensus       486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs  563 (712)
T KOG0283|consen  486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDGKHIVS  563 (712)
T ss_pred             EEeeeEeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEeccc-hhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence            554421        123799999998443 466667 799999999987 778888998777666677889999999999


Q ss_pred             eecCCcEEEEeCCC
Q psy2305         265 GNTNGDLSIWNVNT  278 (334)
Q Consensus       265 ~~~dg~i~iwd~~~  278 (334)
                      +++|..|++|+...
T Consensus       564 ~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  564 ASEDSWVYIWKNDS  577 (712)
T ss_pred             eecCceEEEEeCCC
Confidence            99999999999743

>KOG1446|consensus

Probab=100.00  E-value=5.9e-33  Score=211.96  Aligned_cols=275  Identities=19%  Similarity=0.213  Sum_probs=217.6

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|.++.|+++|.+|++++.|.+++|||..+++..              +.+...+ -.+..++|       ......++
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~--------------~ti~skk-yG~~~~~F-------th~~~~~i   72 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV--------------KTINSKK-YGVDLACF-------THHSNTVI   72 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee--------------eEeeccc-ccccEEEE-------ecCCceEE
Confidence            46899999999999999999999999999999876              3333322 23444444       44444555


Q ss_pred             EeeC--CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          82 CSSM--YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        82 ~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      .++.  |.+|+..++.+.+.++.|.+|..     .|.+++.+|-+..+++++ |++|++||++.......     +  +.
T Consensus        73 ~sStk~d~tIryLsl~dNkylRYF~GH~~-----~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-----l--~~  140 (311)
T KOG1446|consen   73 HSSTKEDDTIRYLSLHDNKYLRYFPGHKK-----RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-----L--NL  140 (311)
T ss_pred             EccCCCCCceEEEEeecCceEEEcCCCCc-----eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-----E--ec
Confidence            5554  78999999999999999999776     999999999999999888 99999999996322221     1  12


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCC--CceEeec---cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDG--RPLFFLK---GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      ..-..++|.|.|- ++|++.....|++||++.-  .+..++.   +.....+.+.|+|||++|+.++ ..+.+++.|.-.
T Consensus       141 ~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~  218 (311)
T KOG1446|consen  141 SGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFD  218 (311)
T ss_pred             CCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccC
Confidence            2234578999998 9999888889999999864  3444442   3467789999999999999999 899999999987


Q ss_pred             CCccceeecccccCC-ceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc-cccccceeeecc
Q psy2305         234 PGCILHTFPRQVSTN-QRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA-HQDCTNGVRWKH  311 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~  311 (334)
                       +..+..+..+.... ......|+||++++++|+.||+|++|+++++            ..+..+.+ +.+.+..+.|  
T Consensus       219 -G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg------------~~v~~~~~~~~~~~~~~~f--  283 (311)
T KOG1446|consen  219 -GTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG------------KKVAVLRGPNGGPVSCVRF--  283 (311)
T ss_pred             -CcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC------------cEeeEecCCCCCCcccccc--
Confidence             77777777664433 2356789999999999999999999999998            66677776 6788999999  


Q ss_pred             CCCcccceeeEEeeecceee
Q psy2305         312 HKFERDLLVADATCSGQITN  331 (334)
Q Consensus       312 s~~~~~~~~~l~t~~~d~~i  331 (334)
                      +|.-    .++++++..=.+
T Consensus       284 nP~~----~mf~sa~s~l~f  299 (311)
T KOG1446|consen  284 NPRY----AMFVSASSNLVF  299 (311)
T ss_pred             CCce----eeeeecCceEEE
Confidence            9999    888888765443

>KOG0292|consensus

Probab=100.00  E-value=3.9e-34  Score=244.89  Aligned_cols=275  Identities=13%  Similarity=0.151  Sum_probs=236.8

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|..++|+|....++++-..|.|++||.+-+..+              ..+. .|.++|..++|       +|...++++
T Consensus        11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--------------~rFd-eHdGpVRgv~F-------H~~qplFVS   68 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--------------DRFD-EHDGPVRGVDF-------HPTQPLFVS   68 (1202)
T ss_pred             cccceecCCCCCEEEEeecCceeeeehhhhhhHH--------------hhhh-ccCCccceeee-------cCCCCeEEe
Confidence            4789999999999999999999999999988776              3444 46789998888       568899999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      |+.|..|++|+.++.+++.++.+|-.     .|+.+.|++.-.++++++ |.+|+||+..+ .+.+.    .+.+|...|
T Consensus        69 GGDDykIkVWnYk~rrclftL~GHlD-----YVRt~~FHheyPWIlSASDDQTIrIWNwqs-r~~ia----vltGHnHYV  138 (1202)
T KOG0292|consen   69 GGDDYKIKVWNYKTRRCLFTLLGHLD-----YVRTVFFHHEYPWILSASDDQTIRIWNWQS-RKCIA----VLTGHNHYV  138 (1202)
T ss_pred             cCCccEEEEEecccceehhhhccccc-----eeEEeeccCCCceEEEccCCCeEEEEeccC-CceEE----EEecCceEE
Confidence            99999999999999999988887554     899999999999999998 89999999996 55555    689999999


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCC--------C-------------------C--ceEeeccCCCCeEEEEEccC
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSD--------G-------------------R--PLFFLKGHNGGITHLEFSSN  212 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------~-------------------~--~~~~~~~~~~~i~~~~~~~~  212 (334)
                      .|..|+|... ++++++-|.+|++||+.-        +                   .  ..+.+.||...|+-++|+|.
T Consensus       139 McAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT  217 (1202)
T KOG0292|consen  139 MCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT  217 (1202)
T ss_pred             EeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence            9999999988 999999999999999831        1                   0  12346789999999999999


Q ss_pred             CcEEEeeecCCCeEEEEEccCCCc--cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccc
Q psy2305         213 GILLFSGARKDCEIICWDLRNPGC--ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESV  290 (334)
Q Consensus       213 ~~~l~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  290 (334)
                      -..+++|+ +|..|++|.+.. .+  .+-+..+|  .+.+.++-|+|...++++.++|++|++||+...           
T Consensus       218 lpliVSG~-DDRqVKlWrmne-tKaWEvDtcrgH--~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-----------  282 (1202)
T KOG0292|consen  218 LPLIVSGA-DDRQVKLWRMNE-TKAWEVDTCRGH--YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-----------  282 (1202)
T ss_pred             cceEEecC-CcceeeEEEecc-ccceeehhhhcc--cCCcceEEecCccceeEecCCCccEEEEecccc-----------
Confidence            99999999 899999999985 32  23344455  678889999999999999999999999999997           


Q ss_pred             ccccceecccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         291 QEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       291 ~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                       ..++.+....+..+.++-  +|..    +++|+|-+.|.++
T Consensus       283 -t~v~tfrrendRFW~laa--hP~l----NLfAAgHDsGm~V  317 (1202)
T KOG0292|consen  283 -TSVQTFRRENDRFWILAA--HPEL----NLFAAGHDSGMIV  317 (1202)
T ss_pred             -cceeeeeccCCeEEEEEe--cCCc----ceeeeecCCceEE
Confidence             778888777788899999  9999    8888888877765

>KOG0640|consensus

Probab=100.00  E-value=1.9e-34  Score=219.56  Aligned_cols=297  Identities=16%  Similarity=0.263  Sum_probs=227.5

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCce----eeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHC----KSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      ++++.+|||||.++|+|+.|..|+|.|++.....    +-..+..+...+...++- .|...|+++.|       +|...
T Consensus       114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~F-------HPre~  185 (430)
T KOG0640|consen  114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDF-------HPRET  185 (430)
T ss_pred             ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceee-------cchhh
Confidence            5789999999999999999999999998732111    001111111112223333 35577888777       56889


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +|+++++|++|+++|+......+.++......   +|.++.|+|.|.+|++|. ...+++||+++ .+....-. .-..|
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~---~vrsiSfHPsGefllvgTdHp~~rlYdv~T-~Qcfvsan-Pd~qh  260 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE---PVRSISFHPSGEFLLVGTDHPTLRLYDVNT-YQCFVSAN-PDDQH  260 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccc---eeeeEeecCCCceEEEecCCCceeEEeccc-eeEeeecC-ccccc
Confidence            99999999999999997654443333322222   899999999999999998 68999999997 33332211 34679


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-cCC-CCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHN-GGITHLEFSSNGILLFSGARKDCEIICWDLRNPG  235 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~-~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~  235 (334)
                      .+.|+++.+++.++ +.++++.||.|++||--+++++.++. .|. ..|.+..|..+|+++++.+ .|..+++|.+.+ +
T Consensus       261 t~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-~DS~vkLWEi~t-~  337 (430)
T KOG0640|consen  261 TGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG-KDSTVKLWEIST-G  337 (430)
T ss_pred             ccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC-CcceeeeeeecC-C
Confidence            99999999999999 99999999999999999999998884 454 4688999999999999999 999999999998 8


Q ss_pred             ccceeecccccCC---ceEEEEecCCCceEEeeec-CCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeecc
Q psy2305         236 CILHTFPRQVSTN---QRVYFDLTSCSNYLLSGNT-NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKH  311 (334)
Q Consensus       236 ~~~~~~~~~~~~~---~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  311 (334)
                      ..+.++.+....+   ......|+....|++.-.+ .+.+.-||.++..           +....-.+|.+.+..+.-  
T Consensus       338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad-----------r~~l~slgHn~a~R~i~H--  404 (430)
T KOG0640|consen  338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD-----------RVALLSLGHNGAVRWIVH--  404 (430)
T ss_pred             ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh-----------hhhhcccCCCCCceEEEe--
Confidence            8888887652222   2233557888888887655 4789999999974           223334679999999999  


Q ss_pred             CCCcccceeeEEeeecceeee
Q psy2305         312 HKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       312 s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      +|.+    ..++|||.|.+..
T Consensus       405 SP~~----p~FmTcsdD~raR  421 (430)
T KOG0640|consen  405 SPVE----PAFMTCSDDFRAR  421 (430)
T ss_pred             CCCC----Cceeeecccceee
Confidence            9999    9999999997754

>KOG0306|consensus

Probab=100.00  E-value=1.2e-33  Score=237.81  Aligned_cols=278  Identities=13%  Similarity=0.187  Sum_probs=238.6

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      -|+++++|.+...+++|+ .+.+++|+..+.+.+              .++..   +.+.+..|       -|.++++++
T Consensus       375 dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kci--------------RTi~~---~y~l~~~F-------vpgd~~Iv~  429 (888)
T KOG0306|consen  375 DVRSLCVSSDSILLASGA-GESIKIWNRDTLKCI--------------RTITC---GYILASKF-------VPGDRYIVL  429 (888)
T ss_pred             heeEEEeecCceeeeecC-CCcEEEEEccCccee--------------EEecc---ccEEEEEe-------cCCCceEEE
Confidence            489999999988777775 467999999998876              33332   35666666       558999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCC----CCeeeeecc---cc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRP----GRECVSRNL---KP  154 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~----~~~~~~~~~---~~  154 (334)
                      |...|.+.+||+.+...+.+++.|..     .+++++.+||++.+++|+ |.+|++||....    +...+...+   ..
T Consensus       430 G~k~Gel~vfdlaS~~l~Eti~AHdg-----aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt  504 (888)
T KOG0306|consen  430 GTKNGELQVFDLASASLVETIRAHDG-----AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT  504 (888)
T ss_pred             eccCCceEEEEeehhhhhhhhhcccc-----ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence            99999999999999998888887665     999999999999999998 999999997531    111010000   12


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP  234 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~  234 (334)
                      -.-+..|.|+.+||||+ +|+++--|.++++|-+.+-+..-++.||.-||.+|..+||++.+++|+ .|+.|++|-++- 
T Consensus       505 Lel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS-ADKnVKiWGLdF-  581 (888)
T KOG0306|consen  505 LELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS-ADKNVKIWGLDF-  581 (888)
T ss_pred             EeccccEEEEEEcCCCc-EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc-CCCceEEecccc-
Confidence            23457899999999999 999999999999999999999999999999999999999999999999 999999999987 


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                      +.+.+.+-+|  ...+.++.|-|+...+++++.|+.|+-||-..-            +.++.+.+|...|++++.  +|+
T Consensus       582 GDCHKS~fAH--dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF------------e~iq~L~~H~~ev~cLav--~~~  645 (888)
T KOG0306|consen  582 GDCHKSFFAH--DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF------------EEIQKLDGHHSEVWCLAV--SPN  645 (888)
T ss_pred             chhhhhhhcc--cCceeEEEEcccceeEEEecCcceEEeechhhh------------hhheeeccchheeeeeEE--cCC
Confidence            8888888877  678899999999999999999999999998886            789999999999999999  999


Q ss_pred             cccceeeEEeeecceeeee
Q psy2305         315 ERDLLVADATCSGQITNVK  333 (334)
Q Consensus       315 ~~~~~~~l~t~~~d~~i~~  333 (334)
                      |    .+++++|.|.+|..
T Consensus       646 G----~~vvs~shD~sIRl  660 (888)
T KOG0306|consen  646 G----SFVVSSSHDKSIRL  660 (888)
T ss_pred             C----CeEEeccCCceeEe
Confidence            9    99999999998863

>KOG0310|consensus

Probab=100.00  E-value=1e-33  Score=227.45  Aligned_cols=275  Identities=13%  Similarity=0.134  Sum_probs=226.5

Q ss_pred             CceeEEEEcCCCcE-EEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGTC-LLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~-l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      ++|.+++|||...+ +|+.+. -.+.||+..+....              +.+.. ....+++++|       -.||++|
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~--------------k~~sr-Fk~~v~s~~f-------R~DG~Ll   83 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR--------------KTFSR-FKDVVYSVDF-------RSDGRLL   83 (487)
T ss_pred             CcceeEecCCCCCCceEEecc-cEEEEEecchhhhh--------------hhHHh-hccceeEEEe-------ecCCeEE
Confidence            57999999995543 444443 46999998887654              22222 3467888777       5699999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      ++|...|.|+++|.++...++.+..|.+     ++....|+|+++.++ +|+ |+.+++||+.+ .. ...   .+.+|+
T Consensus        84 aaGD~sG~V~vfD~k~r~iLR~~~ah~a-----pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~-v~~---~l~~ht  153 (487)
T KOG0310|consen   84 AAGDESGHVKVFDMKSRVILRQLYAHQA-----PVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AY-VQA---ELSGHT  153 (487)
T ss_pred             EccCCcCcEEEeccccHHHHHHHhhccC-----ceeEEEecccCCeEEEecCCCceEEEEEcCC-cE-EEE---EecCCc
Confidence            9999999999999777666778888776     999999999776554 676 78999999996 33 332   689999


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI  237 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~  237 (334)
                      ..|.|.+|+|...+++++|+.||.|++||++.. ..+.++. |..+|..+.+-|.|..+++++  .+.+++||+.+.++.
T Consensus       154 DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~ql  230 (487)
T KOG0310|consen  154 DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQL  230 (487)
T ss_pred             ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCcee
Confidence            999999999998879999999999999999987 6666666 899999999999999999997  789999999975666


Q ss_pred             ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccc
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~  317 (334)
                      +.....|  ...++|+.+..++..|++++-|+.+++||+.+-            +.+..+. ..++|.+++.  +|++  
T Consensus       231 l~~~~~H--~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~------------Kvv~s~~-~~~pvLsiav--s~dd--  291 (487)
T KOG0310|consen  231 LTSMFNH--NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY------------KVVHSWK-YPGPVLSIAV--SPDD--  291 (487)
T ss_pred             hhhhhcc--cceEEEEEeecCCceEeecccccceEEEEccce------------EEEEeee-cccceeeEEe--cCCC--
Confidence            6665555  678999999999999999999999999998775            6666665 4678999999  9999  


Q ss_pred             ceeeEEeeecceeeee
Q psy2305         318 LLVADATCSGQITNVK  333 (334)
Q Consensus       318 ~~~~l~t~~~d~~i~~  333 (334)
                        +.++.|-.||.+-+
T Consensus       292 --~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  292 --QTVVIGMSNGLVSI  305 (487)
T ss_pred             --ceEEEecccceeee
Confidence              99999999998754

>KOG0277|consensus

Probab=100.00  E-value=3.6e-34  Score=212.08  Aligned_cols=242  Identities=22%  Similarity=0.271  Sum_probs=201.9

Q ss_pred             CceeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      |.+..++|+++ .+.+++++.||+++|||+......             ...++ +|...|+++.|++.      +++.+
T Consensus        61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~P-------------i~~~k-EH~~EV~Svdwn~~------~r~~~  120 (311)
T KOG0277|consen   61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKP-------------IHKFK-EHKREVYSVDWNTV------RRRIF  120 (311)
T ss_pred             cceeEeeecCCCcceEEEEecCceEEEeccCCCCcc-------------hhHHH-hhhhheEEeccccc------cceeE
Confidence            67889999995 567889999999999996543321             12333 46788999999753      67778


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC-CCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD-GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      ++++.|++|++|+...++.++++.+++.     .|+..+|+|. .+.+++++ |+++++||++.+++.+.     +..|.
T Consensus       121 ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~-----~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-----i~ah~  190 (311)
T KOG0277|consen  121 LTSSWDGTIKLWDPNRPNSVQTFNGHNS-----CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-----IEAHN  190 (311)
T ss_pred             EeeccCCceEeecCCCCcceEeecCCcc-----EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-----EEecc
Confidence            8899999999999999999999998766     8999999996 45666666 99999999998776654     67788


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCC-cEEEeeecCCCeEEEEEccCCCc
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      ..+.++.|+.-..++++||+.|+.|++||+++- .++..+.+|.-.|+.++|||.. ..|++++ .|=+++|||......
T Consensus       191 ~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas-YDmT~riw~~~~~ds  269 (311)
T KOG0277|consen  191 SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASAS-YDMTVRIWDPERQDS  269 (311)
T ss_pred             ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcc-ccceEEecccccchh
Confidence            999999999988879999999999999999874 5788899999999999999965 4788899 899999999986555


Q ss_pred             cceeecccccCCceEEEEecC-CCceEEeeecCCcEEEEeC
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~  276 (334)
                      .+.+...|  ...+..++||+ ++.++|+.+.|+.++||+.
T Consensus       270 ~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  270 AIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence            56666655  66777888888 5678999999999999984

>KOG0296|consensus

Probab=100.00  E-value=2.1e-33  Score=218.00  Aligned_cols=241  Identities=16%  Similarity=0.262  Sum_probs=198.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      |+|.++.||.||.+||||+.+|.|+||+..++...              ..+.    ..+..+.|    +.|+|.+.+|+
T Consensus       107 DSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~--------------~~~~----~e~~dieW----l~WHp~a~ill  164 (399)
T KOG0296|consen  107 DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ--------------WKLD----QEVEDIEW----LKWHPRAHILL  164 (399)
T ss_pred             CceEEEEEccCceEEEecCCCccEEEEEcccCceE--------------EEee----cccCceEE----EEecccccEEE
Confidence            78999999999999999999999999999998765              2222    34445555    55577999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeec------c--
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRN------L--  152 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~------~--  152 (334)
                      .|+.||.+.+|.+.++...+.+.+|+.     ++++=.|.|+|+.++++. ||+|++|++.+ +.++....      +  
T Consensus       165 AG~~DGsvWmw~ip~~~~~kv~~Gh~~-----~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~~~e~~~~~~  238 (399)
T KOG0296|consen  165 AGSTDGSVWMWQIPSQALCKVMSGHNS-----PCTCGEFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKITQAEGLELPC  238 (399)
T ss_pred             eecCCCcEEEEECCCcceeeEecCCCC-----CcccccccCCCceEEEEecCceEEEEecCC-CceeEEecccccCcCCc
Confidence            999999999999998888888888766     899999999999999998 99999999998 55444332      0  


Q ss_pred             -------------------------------c--------ccccccceEEE---EEcCCCCcEEEEeecCCeEEEEECCC
Q psy2305         153 -------------------------------K--------PWFRKNIVSAI---AINPVHPDICALGTYSKIIGLFSDSD  190 (334)
Q Consensus       153 -------------------------------~--------~~~~~~~v~~~---~~~~~~~~~l~~~~~dg~i~i~d~~~  190 (334)
                                                     .        ...+...+.++   .++..-+ +.|+|+.||+|.|||+..
T Consensus       239 ~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~  317 (399)
T KOG0296|consen  239 ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAA  317 (399)
T ss_pred             cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc-hhhcccccceEEEEeccc
Confidence                                           0        00122222233   3333445 788999999999999988


Q ss_pred             CCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCc
Q psy2305         191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGD  270 (334)
Q Consensus       191 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~  270 (334)
                      .+..+.+. |..+|..+.|-+ ..+|++++ .+|.|+.||.|+ ++++..+.+|  ...+.+++++|+++++++++.|++
T Consensus       318 ~~~R~~c~-he~~V~~l~w~~-t~~l~t~c-~~g~v~~wDaRt-G~l~~~y~GH--~~~Il~f~ls~~~~~vvT~s~D~~  391 (399)
T KOG0296|consen  318 STLRHICE-HEDGVTKLKWLN-TDYLLTAC-ANGKVRQWDART-GQLKFTYTGH--QMGILDFALSPQKRLVVTVSDDNT  391 (399)
T ss_pred             chhheecc-CCCceEEEEEcC-cchheeec-cCceEEeeeccc-cceEEEEecC--chheeEEEEcCCCcEEEEecCCCe
Confidence            87777666 888999999998 77999999 899999999999 9999999988  667899999999999999999999


Q ss_pred             EEEEeCC
Q psy2305         271 LSIWNVN  277 (334)
Q Consensus       271 i~iwd~~  277 (334)
                      .+||++.
T Consensus       392 a~VF~v~  398 (399)
T KOG0296|consen  392 ALVFEVP  398 (399)
T ss_pred             EEEEecC
Confidence            9999875

>KOG0645|consensus

Probab=100.00  E-value=9.7e-33  Score=206.29  Aligned_cols=237  Identities=18%  Similarity=0.238  Sum_probs=195.2

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe---eeEEEcCccccccccceeEEEEcCCCCEEEEee-
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE---IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-  131 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-  131 (334)
                      .|.+.+..++|+|.      .|..||+++.|+.|++|+...+.   +...+.. .|..   .|++++|+|.|++|++++ 
T Consensus        12 gh~~r~W~~awhp~------~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-~hkr---sVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen   12 GHKDRVWSVAWHPG------KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-GHKR---SVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             CCCCcEEEEEeccC------CceEEEeecCCceEEEEecCCCCcEEEEEeccc-cchh---eeeeeeecCCCcEEEEeec
Confidence            35568999999652      28899999999999999987432   2333322 3333   899999999999999998 


Q ss_pred             CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC---CceEeeccCCCCeEEEE
Q psy2305         132 LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG---RPLFFLKGHNGGITHLE  208 (334)
Q Consensus       132 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~  208 (334)
                      |.++.||.-....-.+..   .+.+|+..|.|++|+++|. +||+++.|..|-||.+..+   ++...++.|...|..+.
T Consensus        82 D~t~~Iw~k~~~efecv~---~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~  157 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVA---TLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI  157 (312)
T ss_pred             cceEEEeecCCCceeEEe---eeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE
Confidence            999999987753334443   6899999999999999999 9999999999999998744   56788899999999999


Q ss_pred             EccCCcEEEeeecCCCeEEEEEccCC--CccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCC
Q psy2305         209 FSSNGILLFSGARKDCEIICWDLRNP--GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPY  286 (334)
Q Consensus       209 ~~~~~~~l~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  286 (334)
                      |+|...+|++++ .|.+|++|+-...  -.+..++.+|  ...+.+++|++.|..|++++.|++++||...+.       
T Consensus       158 WHPt~dlL~S~S-YDnTIk~~~~~~dddW~c~~tl~g~--~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------  227 (312)
T KOG0645|consen  158 WHPTEDLLFSCS-YDNTIKVYRDEDDDDWECVQTLDGH--ENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------  227 (312)
T ss_pred             EcCCcceeEEec-cCCeEEEEeecCCCCeeEEEEecCc--cceEEEEEecCCCceEEEecCCcceEeeeeccC-------
Confidence            999999999999 8999999987731  2456777776  558999999999999999999999999987653       


Q ss_pred             ccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         287 EESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       287 ~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                            .   -..|+..++.+.|  .  .    ..|++++.|+.|.+
T Consensus       228 ------~---~~~~sr~~Y~v~W--~--~----~~IaS~ggD~~i~l  257 (312)
T KOG0645|consen  228 ------L---SGMHSRALYDVPW--D--N----GVIASGGGDDAIRL  257 (312)
T ss_pred             ------c---chhcccceEeeee--c--c----cceEeccCCCEEEE
Confidence                  1   1236778999999  6  4    47999999998875

>KOG0289|consensus

Probab=100.00  E-value=6.6e-33  Score=219.75  Aligned_cols=282  Identities=18%  Similarity=0.189  Sum_probs=235.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..+.++...|....+++|+.|..+.++|...++..              ..+.+ |...|+.+.+       +|+...++
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l--------------~~~~G-h~kki~~v~~-------~~~~~~v~  277 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL--------------ATLKG-HTKKITSVKF-------HKDLDTVI  277 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhh--------------hhccC-cceEEEEEEe-------ccchhhee
Confidence            34677788887678999999999999999998876              45554 5677888777       66888999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.|..|++|.............|..     +|+.+..+|.|.||++++ |++..+.|+++ +..+...  .-....-.
T Consensus       278 ~aSad~~i~vws~~~~s~~~~~~~h~~-----~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~-g~~lt~v--s~~~s~v~  349 (506)
T KOG0289|consen  278 TASADEIIRVWSVPLSSEPTSSRPHEE-----PVTGLSLHPTGEYLLSASNDGTWAFSDISS-GSQLTVV--SDETSDVE  349 (506)
T ss_pred             ecCCcceEEeeccccccCccccccccc-----cceeeeeccCCcEEEEecCCceEEEEEccC-CcEEEEE--eeccccce
Confidence            999999999999877776666666555     999999999999999988 99999999998 5554421  11223356


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      +++.+|+|||- +|.+|..|+.|++||+.++..+..|.+|.++|..++|+.||-+|++++ +|+.|++||+|. .+...+
T Consensus       350 ~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRK-l~n~kt  426 (506)
T KOG0289|consen  350 YTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRK-LKNFKT  426 (506)
T ss_pred             eEEeeEcCCce-EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehh-hcccce
Confidence            89999999999 999999999999999999999999999999999999999999999999 899999999998 555666


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV  320 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~  320 (334)
                      +.... ...+.++.|.+.|.+|+.++.|=+|++++-.+..          |..+..+..|.+..+.+.|  ....    +
T Consensus       427 ~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~----------W~~~~~~~~~sg~st~v~F--g~~a----q  489 (506)
T KOG0289|consen  427 IQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS----------WTEIKELADHSGLSTGVRF--GEHA----Q  489 (506)
T ss_pred             eeccc-cccceeEEEcCCCCeEEeecceeEEEEEeccccc----------ceeeehhhhcccccceeee--cccc----e
Confidence            65442 2357889999999999999888777777766653          4778888889888999999  8888    9


Q ss_pred             eEEeeecceeeee
Q psy2305         321 ADATCSGQITNVK  333 (334)
Q Consensus       321 ~l~t~~~d~~i~~  333 (334)
                      +++++|.|..+++
T Consensus       490 ~l~s~smd~~l~~  502 (506)
T KOG0289|consen  490 YLASTSMDAILRL  502 (506)
T ss_pred             EEeeccchhheEE
Confidence            9999999988764

>KOG0316|consensus

Probab=100.00  E-value=4.2e-33  Score=204.32  Aligned_cols=234  Identities=15%  Similarity=0.222  Sum_probs=206.4

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCc
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSE  134 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~  134 (334)
                      .+.++|..+.|       +-+|++.++++.|.+|++|+...|.+++++.+|.+     .|..++.+.|+..+++++ |..
T Consensus        15 ~~qgaV~avry-------N~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~-----EVlD~~~s~Dnskf~s~GgDk~   82 (307)
T KOG0316|consen   15 CAQGAVRAVRY-------NVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH-----EVLDAALSSDNSKFASCGGDKA   82 (307)
T ss_pred             ccccceEEEEE-------ccCCCEEEEcCCCceEEeecccccceeeeecCCCc-----eeeeccccccccccccCCCCce
Confidence            35678988888       56999999999999999999999999999999988     899999999999999776 999


Q ss_pred             EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC--CCceEeeccCCCCeEEEEEccC
Q psy2305         135 VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD--GRPLFFLKGHNGGITHLEFSSN  212 (334)
Q Consensus       135 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~  212 (334)
                      +.+||+.+ ++..+    .+.+|...|+.+.|+.+.. .+++|+.|..+++||-++  .++++.+......|.++..+  
T Consensus        83 v~vwDV~T-Gkv~R----r~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--  154 (307)
T KOG0316|consen   83 VQVWDVNT-GKVDR----RFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--  154 (307)
T ss_pred             EEEEEccc-Ceeee----ecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--
Confidence            99999998 77777    6899999999999999999 999999999999999976  47889998888899999875  


Q ss_pred             CcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccc
Q psy2305         213 GILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQE  292 (334)
Q Consensus       213 ~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  292 (334)
                      +..|++|+ .||+++.||++. +.....+-    ..++.++.|+++++.+.+++.|+++++.|-+++            +
T Consensus       155 ~heIvaGS-~DGtvRtydiR~-G~l~sDy~----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG------------k  216 (307)
T KOG0316|consen  155 EHEIVAGS-VDGTVRTYDIRK-GTLSSDYF----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETG------------K  216 (307)
T ss_pred             ccEEEeec-cCCcEEEEEeec-ceeehhhc----CCcceeEEecCCCCEEEEeeccceeeecccchh------------H
Confidence            56799999 899999999997 66544333    567889999999999999999999999999999            8


Q ss_pred             ccceeccccccc--ceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         293 PLYKFSAHQDCT--NGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       293 ~~~~~~~~~~~i--~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .++.+++|...-  ...++  +...    ..+++||+||.++.
T Consensus       217 lL~sYkGhkn~eykldc~l--~qsd----thV~sgSEDG~Vy~  253 (307)
T KOG0316|consen  217 LLKSYKGHKNMEYKLDCCL--NQSD----THVFSGSEDGKVYF  253 (307)
T ss_pred             HHHHhcccccceeeeeeee--cccc----eeEEeccCCceEEE
Confidence            889999998743  44566  7777    89999999999873

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=6e-32  Score=232.39  Aligned_cols=277  Identities=11%  Similarity=0.072  Sum_probs=203.3

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC-CCcEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG-FTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~l~   81 (334)
                      -|+....++|+..+++++.+.....|+...+...-.+.... ..+.....+. +|.+.|.+++|       +| ++++|+
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G-~~~~~~~~l~-GH~~~V~~v~f-------sP~d~~~La   92 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG-KLASNPPILL-GQEGPIIDVAF-------NPFDPQKLF   92 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccc-cCCCCCceEe-CCCCCEEEEEE-------cCCCCCEEE
Confidence            35666777887778888888888889876654321111111 1111123344 56788999998       55 778999


Q ss_pred             EeeCCCcEEEEeCCCCe-------eeEEEcCccccccccceeEEEEcCCC-CEEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305          82 CSSMYAPIHLWDSVGGE-------IKATYRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      +++.|++|++||+.++.       .+..+..|..     .|.+++|+|++ ++|++++ |+.|++||+.+ +....    
T Consensus        93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~-----~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-g~~~~----  162 (493)
T PTZ00421         93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK-----KVGIVSFHPSAMNVLASAGADMVVNVWDVER-GKAVE----  162 (493)
T ss_pred             EEeCCCEEEEEecCCCccccccCcceEEecCCCC-----cEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-CeEEE----
Confidence            99999999999997653       3455665544     89999999986 6888887 99999999996 44444    


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCC-eEEEEEccCCcEEEeeec---CCCeEEE
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG-ITHLEFSSNGILLFSGAR---KDCEIIC  228 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~---~d~~i~i  228 (334)
                      .+..|...|.+++|+|++. +|++++.|+.|++||+++++.+..+.+|.+. ...+.|.+++..+++++.   .|+.|++
T Consensus       163 ~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl  241 (493)
T PTZ00421        163 VIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML  241 (493)
T ss_pred             EEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence            4678999999999999999 9999999999999999999999999888765 456789998887776541   4789999


Q ss_pred             EEccCCCccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeCCCCCCCCCCCccccccccceecc-cccccce
Q psy2305         229 WDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA-HQDCTNG  306 (334)
Q Consensus       229 wd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~  306 (334)
                      ||++....++.....+ ....+....|++++++|++++ .|+.|++||+.++            +++..... +...+..
T Consensus       242 WDlr~~~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~------------~~~~~~~~~s~~~~~g  308 (493)
T PTZ00421        242 WDTRKMASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE------------RLTFCSSYSSVEPHKG  308 (493)
T ss_pred             EeCCCCCCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC------------ceEEEeeccCCCCCcc
Confidence            9998745454444322 223344566899999999887 4999999999987            33333322 3345677


Q ss_pred             eeeccCCC
Q psy2305         307 VRWKHHKF  314 (334)
Q Consensus       307 ~~~~~s~~  314 (334)
                      ++|  .|.
T Consensus       309 ~~~--~pk  314 (493)
T PTZ00421        309 LCM--MPK  314 (493)
T ss_pred             eEe--ccc
Confidence            777  664

>KOG0276|consensus

Probab=100.00  E-value=2.6e-33  Score=231.52  Aligned_cols=237  Identities=14%  Similarity=0.191  Sum_probs=213.4

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcE
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEV  135 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i  135 (334)
                      +...|.++.+       +|....++++-..|.|.|||.++...++.+...+.     +|++..|-+-.+++++|+ |..|
T Consensus        12 rSdRVKsVd~-------HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~-----PvRa~kfiaRknWiv~GsDD~~I   79 (794)
T KOG0276|consen   12 RSDRVKSVDF-------HPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEV-----PVRAAKFIARKNWIVTGSDDMQI   79 (794)
T ss_pred             cCCceeeeec-------CCCCceEEEeeecCeeEEEecccceeeeeeeeccc-----chhhheeeeccceEEEecCCceE
Confidence            4577888777       56788999999999999999999999999987665     899999999999999998 8999


Q ss_pred             EEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEcc-CC
Q psy2305         136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSS-NG  213 (334)
Q Consensus       136 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~  213 (334)
                      ++|+.++ ...+.    .+..|...|++++.+|..+ +++++++|-+|++||.+.+ .+.+++.+|..-|++++|.| |.
T Consensus        80 rVfnynt-~ekV~----~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~  153 (794)
T KOG0276|consen   80 RVFNYNT-GEKVK----TFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP  153 (794)
T ss_pred             EEEeccc-ceeeE----EeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc
Confidence            9999998 66666    6899999999999999999 9999999999999999765 78899999999999999999 56


Q ss_pred             cEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCC--CceEEeeecCCcEEEEeCCCCCCCCCCCccccc
Q psy2305         214 ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC--SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQ  291 (334)
Q Consensus       214 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  291 (334)
                      +.+++++ -|++|++|.+.. ..+..++.+|  ...+.++++-+.  ..+|++|+.|..++|||.++.            
T Consensus       154 ntFaS~s-LDrTVKVWslgs-~~~nfTl~gH--ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk------------  217 (794)
T KOG0276|consen  154 NTFASAS-LDRTVKVWSLGS-PHPNFTLEGH--EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK------------  217 (794)
T ss_pred             cceeeee-ccccEEEEEcCC-CCCceeeecc--ccCcceEEeccCCCcceEEecCCCceEEEeecchH------------
Confidence            7899999 999999999987 6778888887  555677777664  479999999999999999998            


Q ss_pred             cccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         292 EPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       292 ~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+++++.+|...|..+.|  +|.-    +++++||+||+++|
T Consensus       218 ~CV~TLeGHt~Nvs~v~f--hp~l----piiisgsEDGTvri  253 (794)
T KOG0276|consen  218 SCVQTLEGHTNNVSFVFF--HPEL----PIIISGSEDGTVRI  253 (794)
T ss_pred             HHHHHhhcccccceEEEe--cCCC----cEEEEecCCccEEE
Confidence            899999999999999999  9999    99999999999987

>KOG0641|consensus

Probab=100.00  E-value=1.9e-31  Score=194.87  Aligned_cols=293  Identities=17%  Similarity=0.228  Sum_probs=227.5

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      +|++++|.|.|.+.|+|+...+++|.....-.............|.....-..||.+.|++.+|       +|+|++|++
T Consensus        34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w-------s~~geliat  106 (350)
T KOG0641|consen   34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW-------SPCGELIAT  106 (350)
T ss_pred             heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe-------cCccCeEEe
Confidence            6899999999999999999999999765433222111112233344445566788899999999       779999999


Q ss_pred             eeCCCcEEEEeCCCCeee-----EEEcCccccccccceeEEEEcCC----CCEEEEee--CCcEEEEEcCCCCCeeeeec
Q psy2305          83 SSMYAPIHLWDSVGGEIK-----ATYRPYNQVDEVTHAYSLAFSLD----GNKIYAGF--LSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~--d~~i~i~d~~~~~~~~~~~~  151 (334)
                      |+.|.+|++.-++...+.     ..+..|..     .|..++|..+    +..|++++  |..|.+-|..+ ++...   
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdg-----tirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~-g~~~~---  177 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDG-----TIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR-GQGFH---  177 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCC-----ceeeeEEecCCCcCceEEEecCCCcceEEEeecCC-CCcce---
Confidence            999999999866543322     23333333     8999999764    45777765  77777778776 66665   


Q ss_pred             ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc--C-----CCCeEEEEEccCCcEEEeeecCCC
Q psy2305         152 LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG--H-----NGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~-----~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                       .+.+|.+.|.++ ++-++- .+++|+.|.+|++||++-..++.++..  |     ...|.+++..|.|++|++|. .|.
T Consensus       178 -a~sghtghilal-yswn~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~-~ds  253 (350)
T KOG0641|consen  178 -ALSGHTGHILAL-YSWNGA-MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH-ADS  253 (350)
T ss_pred             -eecCCcccEEEE-EEecCc-EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc-CCC
Confidence             578999999886 455666 999999999999999998888887732  2     35789999999999999999 999


Q ss_pred             eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccccc
Q psy2305         225 EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCT  304 (334)
Q Consensus       225 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  304 (334)
                      ...+||++. +..++.+..|  ...+.++.|+|...|+++++.|..|++-|+...-.-        .-++.....|.+.+
T Consensus       254 sc~lydirg-~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~--------el~~~vv~ehkdk~  322 (350)
T KOG0641|consen  254 SCMLYDIRG-GRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH--------ELPIMVVAEHKDKA  322 (350)
T ss_pred             ceEEEEeeC-CceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccchhh--------cCceEEEEeccCce
Confidence            999999997 8888888776  677889999999999999999999999998863110        02344456789999


Q ss_pred             ceeeeccCCCcccceeeEEeeecceeee
Q psy2305         305 NGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       305 ~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      ..+.|  +|..    --+++.+.|++..
T Consensus       323 i~~rw--h~~d----~sfisssadkt~t  344 (350)
T KOG0641|consen  323 IQCRW--HPQD----FSFISSSADKTAT  344 (350)
T ss_pred             EEEEe--cCcc----ceeeeccCcceEE
Confidence            99999  9998    7788889988753

>KOG0305|consensus

Probab=100.00  E-value=3.1e-32  Score=226.47  Aligned_cols=269  Identities=14%  Similarity=0.136  Sum_probs=224.2

Q ss_pred             EEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC
Q psy2305           7 VDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY   86 (334)
Q Consensus         7 ~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d   86 (334)
                      +.|+. .+.||+|. ...|++|+..++...               .+...+...|+++.|       +++|.+|++|..+
T Consensus       183 ldWss-~n~laVal-g~~vylW~~~s~~v~---------------~l~~~~~~~vtSv~w-------s~~G~~LavG~~~  238 (484)
T KOG0305|consen  183 LDWSS-ANVLAVAL-GQSVYLWSASSGSVT---------------ELCSFGEELVTSVKW-------SPDGSHLAVGTSD  238 (484)
T ss_pred             hhccc-CCeEEEEe-cceEEEEecCCCceE---------------EeEecCCCceEEEEE-------CCCCCEEEEeecC
Confidence            56774 34677764 347999999998864               222222678988888       7799999999999


Q ss_pred             CcEEEEeCCCCeeeEEEcC-ccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEE
Q psy2305          87 APIHLWDSVGGEIKATYRP-YNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAI  164 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~  164 (334)
                      |.|.|||..+.+.+..+.. |..     .|-+++|+  +..+.+|+ ++.|..+|++.......    .+.+|...|..+
T Consensus       239 g~v~iwD~~~~k~~~~~~~~h~~-----rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~----~~~~H~qeVCgL  307 (484)
T KOG0305|consen  239 GTVQIWDVKEQKKTRTLRGSHAS-----RVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS----TLQGHRQEVCGL  307 (484)
T ss_pred             CeEEEEehhhccccccccCCcCc-----eeEEEecc--CceEEEecCCCcEEEEEEecchhhhh----hhhcccceeeee
Confidence            9999999999888888877 443     89999999  56677887 99999999997433332    478899999999


Q ss_pred             EEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccC-CcEEEeeec-CCCeEEEEEccCCCccceeec
Q psy2305         165 AINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN-GILLFSGAR-KDCEIICWDLRNPGCILHTFP  242 (334)
Q Consensus       165 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~-~d~~i~iwd~~~~~~~~~~~~  242 (334)
                      .|++++. ++|+|+.|+.+.|||....++...+..|.+.|..++|+|- ...||+|+. .|+.|++||..+ +..+..+.
T Consensus       308 kws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vd  385 (484)
T KOG0305|consen  308 KWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GARIDSVD  385 (484)
T ss_pred             EECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-CcEecccc
Confidence            9999999 9999999999999999888999999999999999999994 457777542 699999999997 66655554


Q ss_pred             ccccCCceEEEEecCCCceEEee--ecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305         243 RQVSTNQRVYFDLTSCSNYLLSG--NTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV  320 (334)
Q Consensus       243 ~~~~~~~~~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~  320 (334)
                         ....|..+.|++..+.|+++  ..++.|.||+..+.            +.+..+.+|...|..+++  +|||    .
T Consensus       386 ---tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~------------~~~~~l~gH~~RVl~la~--SPdg----~  444 (484)
T KOG0305|consen  386 ---TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM------------KLVAELLGHTSRVLYLAL--SPDG----E  444 (484)
T ss_pred             ---cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc------------ceeeeecCCcceeEEEEE--CCCC----C
Confidence               36789999999999777764  34679999999996            788999999999999999  9999    9


Q ss_pred             eEEeeecceeeee
Q psy2305         321 ADATCSGQITNVK  333 (334)
Q Consensus       321 ~l~t~~~d~~i~~  333 (334)
                      .+++|+.|.+++.
T Consensus       445 ~i~t~a~DETlrf  457 (484)
T KOG0305|consen  445 TIVTGAADETLRF  457 (484)
T ss_pred             EEEEecccCcEEe
Confidence            9999999999863

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.6e-31  Score=245.41  Aligned_cols=239  Identities=12%  Similarity=0.126  Sum_probs=195.5

Q ss_pred             ceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .|.+++|+| ++.+||+++.||+|++||+.+++..              ..+. .|...|++++|+|      +++.+|+
T Consensus       534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~--------------~~~~-~H~~~V~~l~~~p------~~~~~L~  592 (793)
T PLN00181        534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV--------------TEMK-EHEKRVWSIDYSS------ADPTLLA  592 (793)
T ss_pred             ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE--------------EEec-CCCCCEEEEEEcC------CCCCEEE
Confidence            467899987 4789999999999999999987755              2343 4668899998843      2788999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEc-CCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS-LDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +|+.|+.|++||+.++..+..+..+.      .+.++.|+ +++.+|++|+ |+.|++||++.......    .+.+|..
T Consensus       593 Sgs~Dg~v~iWd~~~~~~~~~~~~~~------~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~----~~~~h~~  662 (793)
T PLN00181        593 SGSDDGSVKLWSINQGVSIGTIKTKA------NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC----TMIGHSK  662 (793)
T ss_pred             EEcCCCEEEEEECCCCcEEEEEecCC------CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce----EecCCCC
Confidence            99999999999999988887776432      68899995 5689999987 99999999986332333    4678999


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCC------CCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSD------GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      .|.++.|. ++. .|++++.|++|++||++.      .+++..+.+|...+..++|+|++.+|++|+ .|+.+++|+...
T Consensus       663 ~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~  739 (793)
T PLN00181        663 TVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAF  739 (793)
T ss_pred             CEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCC
Confidence            99999997 566 899999999999999974      356788999999999999999999999999 899999999865


Q ss_pred             CCccceeec-----------ccccCCceEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305         234 PGCILHTFP-----------RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       234 ~~~~~~~~~-----------~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  276 (334)
                       ..+...+.           .......+.+++|+|++..|++|+.||.|+||++
T Consensus       740 -~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        740 -PMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             -CCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence             32222111           1112346889999999999999999999999986

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=7.9e-31  Score=226.59  Aligned_cols=249  Identities=12%  Similarity=0.109  Sum_probs=184.0

Q ss_pred             eeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC-CcEEEEeeCCCcEEEEeCCCC
Q psy2305          19 NSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF-TSYFLCSSMYAPIHLWDSVGG   97 (334)
Q Consensus        19 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~   97 (334)
                      |+.++.|++|+.......              ..+. +|...|.+++|+       |+ +++|++|+.|+.|++||+.++
T Consensus        50 GG~~gvI~L~~~~r~~~v--------------~~L~-gH~~~V~~lafs-------P~~~~lLASgS~DgtIrIWDi~t~  107 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPV--------------IKLK-GHTSSILDLQFN-------PCFSEILASGSEDLTIRVWEIPHN  107 (568)
T ss_pred             CCceeEEEeeecCCCceE--------------EEEc-CCCCCEEEEEEc-------CCCCCEEEEEeCCCeEEEEECCCC
Confidence            445677888876654332              3444 466889999984       44 789999999999999999764


Q ss_pred             e--------eeEEEcCccccccccceeEEEEcCCCCEE-EEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEc
Q psy2305          98 E--------IKATYRPYNQVDEVTHAYSLAFSLDGNKI-YAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN  167 (334)
Q Consensus        98 ~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (334)
                      .        .+..+..|..     .|.+++|+|++..+ ++++ |+.|++||+++ +....    .+ .|...|.+++|+
T Consensus       108 ~~~~~~i~~p~~~L~gH~~-----~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t-g~~~~----~i-~~~~~V~Slsws  176 (568)
T PTZ00420        108 DESVKEIKDPQCILKGHKK-----KISIIDWNPMNYYIMCSSGFDSFVNIWDIEN-EKRAF----QI-NMPKKLSSLKWN  176 (568)
T ss_pred             CccccccccceEEeecCCC-----cEEEEEECCCCCeEEEEEeCCCeEEEEECCC-CcEEE----EE-ecCCcEEEEEEC
Confidence            2        1233444433     89999999998765 5666 99999999997 44333    22 255789999999


Q ss_pred             CCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEE-----EEccCCcEEEeeecCCC----eEEEEEccCCCccc
Q psy2305         168 PVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHL-----EFSSNGILLFSGARKDC----EIICWDLRNPGCIL  238 (334)
Q Consensus       168 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~l~~~~~~d~----~i~iwd~~~~~~~~  238 (334)
                      |+|. +|++++.|+.|++||+++++.+..+.+|.+.+...     .|++++.+|++++ .|+    .|+|||++....++
T Consensus       177 pdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG-~d~~~~R~VkLWDlr~~~~pl  254 (568)
T PTZ00420        177 IKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTG-FSKNNMREMKLWDLKNTTSAL  254 (568)
T ss_pred             CCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEE-cCCCCccEEEEEECCCCCCce
Confidence            9999 99999999999999999999999999998765432     3468889999887 564    79999999656666


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      ..+..+.....+..+-..++|.++++|+.|+.|++|++..+..          ..+..+. +..++.+++|  .|+.
T Consensus       255 ~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~----------~~l~~~~-s~~p~~g~~f--~Pkr  318 (568)
T PTZ00420        255 VTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI----------RKVNEYK-SCSPFRSFGF--LPKQ  318 (568)
T ss_pred             EEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE----------Eeecccc-cCCCccceEE--cccc
Confidence            6655443334333343456689999999999999999987521          2233333 4567788888  8865

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.1e-31  Score=217.43  Aligned_cols=238  Identities=22%  Similarity=0.294  Sum_probs=204.8

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCc
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSE  134 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~  134 (334)
                      .|..+|.+++|       +|++++|++++.||.+++|++.+++....+..+..     .+..+.|+|+++++++++ ++.
T Consensus         7 ~h~~~i~~~~~-------~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~~~~   74 (289)
T cd00200           7 GHTGGVTCVAF-------SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG-----PVRDVAASADGTYLASGSSDKT   74 (289)
T ss_pred             ccCCCEEEEEE-------cCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-----ceeEEEECCCCCEEEEEcCCCe
Confidence            35688999888       66899999999999999999998877777766544     788999999999999887 999


Q ss_pred             EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCc
Q psy2305         135 VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGI  214 (334)
Q Consensus       135 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  214 (334)
                      +++|++.. ++...    .+..|...+.++.|+|++. ++++++.++.|.+||+++++....+..|...+.+++|+|++.
T Consensus        75 i~i~~~~~-~~~~~----~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  148 (289)
T cd00200          75 IRLWDLET-GECVR----TLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT  148 (289)
T ss_pred             EEEEEcCc-ccceE----EEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence            99999986 33433    4567888999999999987 888888899999999998888888888999999999999999


Q ss_pred             EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccc
Q psy2305         215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL  294 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  294 (334)
                      ++++++ .++.+++||++. .+....+..+  ...+.++.|+|+++.+++++.++.|++||+..+            +.+
T Consensus       149 ~l~~~~-~~~~i~i~d~~~-~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~------------~~~  212 (289)
T cd00200         149 FVASSS-QDGTIKLWDLRT-GKCVATLTGH--TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG------------KCL  212 (289)
T ss_pred             EEEEEc-CCCcEEEEEccc-cccceeEecC--ccccceEEECCCcCEEEEecCCCcEEEEECCCC------------cee
Confidence            998888 799999999986 6666666644  557888999999999999999999999999986            566


Q ss_pred             ceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         295 YKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       295 ~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ..+..|...+..+.|  +|++    .++++++.||.+++
T Consensus       213 ~~~~~~~~~i~~~~~--~~~~----~~~~~~~~~~~i~i  245 (289)
T cd00200         213 GTLRGHENGVNSVAF--SPDG----YLLASGSEDGTIRV  245 (289)
T ss_pred             cchhhcCCceEEEEE--cCCC----cEEEEEcCCCcEEE
Confidence            777778889999999  9998    99999988988765

>KOG0292|consensus

Probab=100.00  E-value=1.8e-31  Score=228.72  Aligned_cols=244  Identities=15%  Similarity=0.232  Sum_probs=203.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .+|+.++|+|++.++++|+.|..|++|+..+.+..              .++.+ |-.-|..+.|       ++.-.+++
T Consensus        52 GpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl--------------ftL~G-HlDYVRt~~F-------HheyPWIl  109 (1202)
T KOG0292|consen   52 GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL--------------FTLLG-HLDYVRTVFF-------HHEYPWIL  109 (1202)
T ss_pred             CccceeeecCCCCeEEecCCccEEEEEecccceeh--------------hhhcc-ccceeEEeec-------cCCCceEE
Confidence            47999999999999999999999999999998876              35554 4467777666       66888999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCC-------C--------C
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRP-------G--------R  145 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~-------~--------~  145 (334)
                      ++|.|.+|+||+.++++++..+.+|+|     .|.|..|+|....+++++ |.+|++||+..-       +        .
T Consensus       110 SASDDQTIrIWNwqsr~~iavltGHnH-----YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~  184 (1202)
T KOG0292|consen  110 SASDDQTIRIWNWQSRKCIAVLTGHNH-----YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ  184 (1202)
T ss_pred             EccCCCeEEEEeccCCceEEEEecCce-----EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence            999999999999999999999999999     999999999999999999 999999998631       1        0


Q ss_pred             e----e-----eeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC--ceEeeccCCCCeEEEEEccCCc
Q psy2305         146 E----C-----VSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR--PLFFLKGHNGGITHLEFSSNGI  214 (334)
Q Consensus       146 ~----~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~  214 (334)
                      .    +     ......+.+|...|+-++|+|.-+ +|++|++|+.|++|.+...+  .+-+..+|.+.|.++-|+|...
T Consensus       185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~  263 (1202)
T KOG0292|consen  185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD  263 (1202)
T ss_pred             ccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccc
Confidence            0    0     000115688999999999999999 99999999999999996554  3556789999999999999999


Q ss_pred             EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      .+++.+ +|++|++||+.. ...++.+...  ....+.++-+|..+++++|- |+-+.+|.++.
T Consensus       264 lIlSns-EDksirVwDm~k-Rt~v~tfrre--ndRFW~laahP~lNLfAAgH-DsGm~VFkleR  322 (1202)
T KOG0292|consen  264 LILSNS-EDKSIRVWDMTK-RTSVQTFRRE--NDRFWILAAHPELNLFAAGH-DSGMIVFKLER  322 (1202)
T ss_pred             eeEecC-CCccEEEEeccc-ccceeeeecc--CCeEEEEEecCCcceeeeec-CCceEEEEEcc
Confidence            999999 999999999997 7778888755  44566677889888887764 55566676653

>KOG0305|consensus

Probab=100.00  E-value=4.7e-32  Score=225.40  Aligned_cols=241  Identities=18%  Similarity=0.247  Sum_probs=207.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|+++.|+++|.+||+|..+|.|.|||..+.+..              ..+..+|...|-+++|         ++..+.
T Consensus       218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~--------------~~~~~~h~~rvg~laW---------~~~~ls  274 (484)
T KOG0305|consen  218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT--------------RTLRGSHASRVGSLAW---------NSSVLS  274 (484)
T ss_pred             CceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--------------ccccCCcCceeEEEec---------cCceEE
Confidence            67999999999999999999999999999988776              4666668899999999         577899


Q ss_pred             EeeCCCcEEEEeCCCCeeeEE-EcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKAT-YRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +|+.|+.|..+|+...+.... +..|.+     .|..++|++|++++++|+ |+.+.|||... ..+..    .+..|..
T Consensus       275 sGsr~~~I~~~dvR~~~~~~~~~~~H~q-----eVCgLkws~d~~~lASGgnDN~~~Iwd~~~-~~p~~----~~~~H~a  344 (484)
T KOG0305|consen  275 SGSRDGKILNHDVRISQHVVSTLQGHRQ-----EVCGLKWSPDGNQLASGGNDNVVFIWDGLS-PEPKF----TFTEHTA  344 (484)
T ss_pred             EecCCCcEEEEEEecchhhhhhhhcccc-----eeeeeEECCCCCeeccCCCccceEeccCCC-ccccE----EEeccce
Confidence            999999999999988766544 555555     899999999999999998 99999999964 33333    5789999


Q ss_pred             ceEEEEEcCCCCcEEEEe--ecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeee-cCCCeEEEEEccCCCc
Q psy2305         160 IVSAIAINPVHPDICALG--TYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA-RKDCEIICWDLRNPGC  236 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~d~~i~iwd~~~~~~  236 (334)
                      .|.+++|+|-...+||+|  +.|+.|++||..+++.+..+. ....|.++.|++..+-|+++. ..++.|.||+..+ .+
T Consensus       345 AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-~~  422 (484)
T KOG0305|consen  345 AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-MK  422 (484)
T ss_pred             eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-cc
Confidence            999999999888799986  469999999999999988876 456899999999987666543 2577899999998 67


Q ss_pred             cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .+..+.+|  ...+..++++|||..+++|+.|.++++|++-..
T Consensus       423 ~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  423 LVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            77888887  667999999999999999999999999998874

>KOG0265|consensus

Probab=100.00  E-value=8.6e-32  Score=204.01  Aligned_cols=245  Identities=18%  Similarity=0.217  Sum_probs=206.1

Q ss_pred             eeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCEEEEee
Q psy2305          53 LKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF  131 (334)
Q Consensus        53 ~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (334)
                      ...+|.+.|+.+.|       +|+|.+|++|+.|..|.+|++.. -+-...++.|..     .|..+.|.+|++.+++++
T Consensus        42 ~l~gh~geI~~~~F-------~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S~g  109 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKF-------HPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG-----AVMELHGMRDGSHILSCG  109 (338)
T ss_pred             hcCCCcceEEEEEE-------CCCCCeEeecCCcceEEEEeccccccceeeeccccc-----eeEeeeeccCCCEEEEec
Confidence            34567889999888       67999999999999999999643 233455665444     999999999999999887


Q ss_pred             -CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEc
Q psy2305         132 -LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFS  210 (334)
Q Consensus       132 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  210 (334)
                       |.+++.||+++ ++...    ..++|...|+.+.-+.-|..++.+++.|+++++||+++..+++++. ..-.++++.|.
T Consensus       110 tDk~v~~wD~~t-G~~~r----k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~  183 (338)
T KOG0265|consen  110 TDKTVRGWDAET-GKRIR----KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFK  183 (338)
T ss_pred             CCceEEEEeccc-ceeee----hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEec
Confidence             99999999998 77766    6889999999999776777678889999999999999999988876 45679999999


Q ss_pred             cCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccc
Q psy2305         211 SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESV  290 (334)
Q Consensus       211 ~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  290 (334)
                      ..+..+.+|+ -|+.|++||++. ......+.+|  ...++.+..+|+|.++.+-+.|.++++||++.-...        
T Consensus       184 d~s~qv~sgg-Idn~ikvWd~r~-~d~~~~lsGh--~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~--------  251 (338)
T KOG0265|consen  184 DTSDQVISGG-IDNDIKVWDLRK-NDGLYTLSGH--ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS--------  251 (338)
T ss_pred             ccccceeecc-ccCceeeecccc-CcceEEeecc--cCceeeEEeccCCCccccccccceEEEEEecccCCC--------
Confidence            9999999999 999999999998 7778888888  667889999999999999999999999999864211        


Q ss_pred             ccccceeccccc----ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         291 QEPLYKFSAHQD----CTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       291 ~~~~~~~~~~~~----~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+.+..+.+|..    ....++|  +|++    +.+.+++.|+.+++
T Consensus       252 ~R~v~if~g~~hnfeknlL~csw--sp~~----~~i~ags~dr~vyv  292 (338)
T KOG0265|consen  252 QRCVKIFQGHIHNFEKNLLKCSW--SPNG----TKITAGSADRFVYV  292 (338)
T ss_pred             CceEEEeecchhhhhhhcceeec--cCCC----CccccccccceEEE
Confidence            144666666543    4567889  9999    99999999998875

>KOG0973|consensus

Probab=100.00  E-value=1.7e-31  Score=233.79  Aligned_cols=290  Identities=15%  Similarity=0.141  Sum_probs=222.0

Q ss_pred             CceeEEEEcCCCcEEEEee--CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           2 DIEEDVDEAPDGTCLLTNS--NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      ..|.+++.+|||..+|||+  .|+.++||+.+.-....  .......+.+..... .|.+.|.++.|       +|||++
T Consensus        14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~--~~~~~~l~k~l~~m~-~h~~sv~CVR~-------S~dG~~   83 (942)
T KOG0973|consen   14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK--EEKNENLPKHLCTMD-DHDGSVNCVRF-------SPDGSY   83 (942)
T ss_pred             eeEEEEEecCCceeEecCCccccccceeeccccccchh--hhhhcccchhheeec-cccCceeEEEE-------CCCCCe
Confidence            3578999999999999999  89999999976432110  000011333434444 36688999888       779999


Q ss_pred             EEEeeCCCcEEEEeCCC------------------CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEc
Q psy2305          80 FLCSSMYAPIHLWDSVG------------------GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFST  140 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~  140 (334)
                      ||+|+.|+.|.||....                  .+....+.+|..     .|..++|+|++.+|++++ |++|.+|+.
T Consensus        84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-----DV~Dv~Wsp~~~~lvS~s~DnsViiwn~  158 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-----DVLDVNWSPDDSLLVSVSLDNSVIIWNA  158 (942)
T ss_pred             EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-----ccceeccCCCccEEEEecccceEEEEcc
Confidence            99999999999998762                  124455665444     899999999999999998 999999999


Q ss_pred             CCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC------CCeEEEEEccCCc
Q psy2305         141 DRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN------GGITHLEFSSNGI  214 (334)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~i~~~~~~~~~~  214 (334)
                      .+ ...+.    .+.+|...|..+.|.|-|+ +||+-+.|++|++|++.+....+.+.++-      .-...+.|||||+
T Consensus       159 ~t-F~~~~----vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~  232 (942)
T KOG0973|consen  159 KT-FELLK----VLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH  232 (942)
T ss_pred             cc-ceeee----eeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence            97 44444    6899999999999999999 99999999999999987766766665442      3467899999999


Q ss_pred             EEEeeec---CCCeEEEEEccCCCccceeecccccCCceEEEEecCC-----Cc------------eEEeeecCCcEEEE
Q psy2305         215 LLFSGAR---KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC-----SN------------YLLSGNTNGDLSIW  274 (334)
Q Consensus       215 ~l~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~~------------~l~~~~~dg~i~iw  274 (334)
                      +|++...   .-.++.|.+-.+ -+.-..+.+|  ..++.++.|+|.     .+            .+|+|+.|++|.||
T Consensus       233 ~las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW  309 (942)
T KOG0973|consen  233 HLASPNAVNGGKSTIAIIERGT-WKVDKDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW  309 (942)
T ss_pred             eecchhhccCCcceeEEEecCC-ceeeeeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence            9998652   234577777655 4444566677  457777888871     11            67899999999999


Q ss_pred             eCCCCCCCCCCCccccccccceec-ccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         275 NVNTSNLPSSPYEESVQEPLYKFS-AHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       275 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .....            +++.... -....|.+++|  +|||    -.|+.||.||+|+.
T Consensus       310 ~T~~~------------RPl~vi~~lf~~SI~DmsW--spdG----~~LfacS~DGtV~~  351 (942)
T KOG0973|consen  310 NTALP------------RPLFVIHNLFNKSIVDMSW--SPDG----FSLFACSLDGTVAL  351 (942)
T ss_pred             ecCCC------------CchhhhhhhhcCceeeeeE--cCCC----CeEEEEecCCeEEE
Confidence            98776            4443332 23457999999  9999    99999999999863

>KOG0288|consensus

Probab=100.00  E-value=6.1e-33  Score=218.58  Aligned_cols=276  Identities=17%  Similarity=0.212  Sum_probs=221.0

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|..+.|-++...|++|+.|..|++|+....+..            +..++.+ ..+.|+++.|       .++++++++
T Consensus       177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~------------~~~tLaG-s~g~it~~d~-------d~~~~~~iA  236 (459)
T KOG0288|consen  177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE------------LISTLAG-SLGNITSIDF-------DSDNKHVIA  236 (459)
T ss_pred             ccceeEEccCcchhhhcchhhhhhhhhcccchhh------------hhhhhhc-cCCCcceeee-------cCCCceEEe
Confidence            4678889999889999999999999999877732            2234433 3466777766       779999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      ++.|+.+++|++...+...++.+|..     .|+++.|......+++|+ |.+|++||+.. ......     .-....+
T Consensus       237 as~d~~~r~Wnvd~~r~~~TLsGHtd-----kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~kt-----~l~~S~c  305 (459)
T KOG0288|consen  237 ASNDKNLRLWNVDSLRLRHTLSGHTD-----KVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSKT-----VLPGSQC  305 (459)
T ss_pred             ecCCCceeeeeccchhhhhhhccccc-----ceeeehhhccccceeeccccchhhhhhhhh-hheecc-----ccccccc
Confidence            99999999999999999999998555     899999998877788888 99999999985 333332     1123445


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceee
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                      ..|..+  .. .+++|..|++|++||.++..+..+...+. .|+++..+++|..|++++ .|.++.+.|+++ ......+
T Consensus       306 nDI~~~--~~-~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss-RDdtl~viDlRt-~eI~~~~  379 (459)
T KOG0288|consen  306 NDIVCS--IS-DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS-RDDTLKVIDLRT-KEIRQTF  379 (459)
T ss_pred             cceEec--ce-eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec-CCCceeeeeccc-ccEEEEe
Confidence            566665  33 78999999999999999999999988665 899999999999999999 799999999997 5545555


Q ss_pred             ccc--ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc--ccceeeeccCCCccc
Q psy2305         242 PRQ--VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD--CTNGVRWKHHKFERD  317 (334)
Q Consensus       242 ~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~s~~~~~  317 (334)
                      ...  ........+.|||++.|+++|+.||.|+||++.+++            +...+.....  .|++++|  +|.|  
T Consensus       380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK------------lE~~l~~s~s~~aI~s~~W--~~sG--  443 (459)
T KOG0288|consen  380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK------------LEKVLSLSTSNAAITSLSW--NPSG--  443 (459)
T ss_pred             eccccccccccceeEECCCCceeeeccCCCcEEEEEccCce------------EEEEeccCCCCcceEEEEE--cCCC--
Confidence            432  123346678899999999999999999999999984            4444443333  5999999  9999  


Q ss_pred             ceeeEEeeecceeeee
Q psy2305         318 LLVADATCSGQITNVK  333 (334)
Q Consensus       318 ~~~~l~t~~~d~~i~~  333 (334)
                        ..|++++.++.+.+
T Consensus       444 --~~Llsadk~~~v~l  457 (459)
T KOG0288|consen  444 --SGLLSADKQKAVTL  457 (459)
T ss_pred             --chhhcccCCcceEe
Confidence              99999999887653

>KOG0281|consensus

Probab=100.00  E-value=3.7e-33  Score=215.72  Aligned_cols=224  Identities=13%  Similarity=0.178  Sum_probs=195.9

Q ss_pred             ceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEE
Q psy2305          58 GGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVK  136 (334)
Q Consensus        58 ~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~  136 (334)
                      ...|+++.+         |...+++|.+|++|++||..+-.+.+.+.+|..     .|.|+.|.  .+.+++|+ |.+|+
T Consensus       197 skgVYClQY---------DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG-----SVLCLqyd--~rviisGSSDsTvr  260 (499)
T KOG0281|consen  197 SKGVYCLQY---------DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTG-----SVLCLQYD--ERVIVSGSSDSTVR  260 (499)
T ss_pred             CCceEEEEe---------cchhhhcccccCceEEeccccHHHHHhhhcCCC-----cEEeeecc--ceEEEecCCCceEE
Confidence            356888888         788899999999999999999888888887665     88888876  45888887 99999


Q ss_pred             EEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC---ceEeeccCCCCeEEEEEccCC
Q psy2305         137 IFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR---PLFFLKGHNGGITHLEFSSNG  213 (334)
Q Consensus       137 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~  213 (334)
                      +||.++ ++++.    .+.+|...|..+.|+..   ++++++.|.++.+||+....   +.+.+.||...|..+.|+  .
T Consensus       261 vWDv~t-ge~l~----tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~  330 (499)
T KOG0281|consen  261 VWDVNT-GEPLN----TLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D  330 (499)
T ss_pred             EEeccC-Cchhh----HHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--c
Confidence            999998 77776    68899999999999865   99999999999999997764   445678999999999996  5


Q ss_pred             cEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccc
Q psy2305         214 ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEP  293 (334)
Q Consensus       214 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  293 (334)
                      +++++++ .|.+|++|++.+ ...++.+.+|.  ..+.++.  -.++++++|+.|.+|++||++.|            .+
T Consensus       331 kyIVsAS-gDRTikvW~~st-~efvRtl~gHk--RGIAClQ--Yr~rlvVSGSSDntIRlwdi~~G------------~c  392 (499)
T KOG0281|consen  331 KYIVSAS-GDRTIKVWSTST-CEFVRTLNGHK--RGIACLQ--YRDRLVVSGSSDNTIRLWDIECG------------AC  392 (499)
T ss_pred             ceEEEec-CCceEEEEeccc-eeeehhhhccc--ccceehh--ccCeEEEecCCCceEEEEecccc------------HH
Confidence            5999999 899999999998 88889998884  3455554  46899999999999999999999            88


Q ss_pred             cceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         294 LYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +..+.+|+.-|.++.|    |.    +.+++|+.||+|++
T Consensus       393 LRvLeGHEeLvRciRF----d~----krIVSGaYDGkikv  424 (499)
T KOG0281|consen  393 LRVLEGHEELVRCIRF----DN----KRIVSGAYDGKIKV  424 (499)
T ss_pred             HHHHhchHHhhhheee----cC----ceeeeccccceEEE
Confidence            9999999999999999    77    78999999999986

>KOG0264|consensus

Probab=100.00  E-value=1.3e-31  Score=213.69  Aligned_cols=264  Identities=18%  Similarity=0.298  Sum_probs=210.1

Q ss_pred             eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeee----------EEEcCccccccccceeEEEE
Q psy2305          51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK----------ATYRPYNQVDEVTHAYSLAF  120 (334)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~----------~~~~~~~~~~~~~~v~~~~~  120 (334)
                      ......|.+.|+.+++-|.      +..++++.+..+.|.|||..+..-.          ..+.+|..     .-++++|
T Consensus       117 i~~~i~h~gEVnRaRymPQ------np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-----eg~glsW  185 (422)
T KOG0264|consen  117 ISQKINHDGEVNRARYMPQ------NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-----EGYGLSW  185 (422)
T ss_pred             EEEeccCCccchhhhhCCC------CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-----ccccccc
Confidence            4445567788988888663      5567888888999999998643221          13444332     3468999


Q ss_pred             cCCCC-EEEEee-CCcEEEEEcCCCCCe--eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC--CCCce
Q psy2305         121 SLDGN-KIYAGF-LSEVKIFSTDRPGRE--CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS--DGRPL  194 (334)
Q Consensus       121 ~~~~~-~l~~~~-d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~  194 (334)
                      ++... .|++++ |+.|++||+...+..  .......+.+|...|..++|++-...+|+++++|+.+.|||+|  +.++.
T Consensus       186 n~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~  265 (422)
T KOG0264|consen  186 NRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS  265 (422)
T ss_pred             ccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc
Confidence            99653 455665 999999999874442  1111115789999999999999888799999999999999999  56777


Q ss_pred             EeeccCCCCeEEEEEcc-CCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCC-ceEEeeecCCcEE
Q psy2305         195 FFLKGHNGGITHLEFSS-NGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLS  272 (334)
Q Consensus       195 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~  272 (334)
                      ....+|.++|.+++|+| ++..||+|+ .|++|++||+|+..+++..+.+|  ...+.++.|||.. ..||+++.|+.+.
T Consensus       266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S-~D~tV~LwDlRnL~~~lh~~e~H--~dev~~V~WSPh~etvLASSg~D~rl~  342 (422)
T KOG0264|consen  266 HSVKAHSAEVNCVAFNPFNEFILATGS-ADKTVALWDLRNLNKPLHTFEGH--EDEVFQVEWSPHNETVLASSGTDRRLN  342 (422)
T ss_pred             ccccccCCceeEEEeCCCCCceEEecc-CCCcEEEeechhcccCceeccCC--CcceEEEEeCCCCCceeEecccCCcEE
Confidence            88899999999999999 456788888 89999999999988888888887  7789999999965 6788999999999


Q ss_pred             EEeCCCCCCCCCC--CccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         273 IWNVNTSNLPSSP--YEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       273 iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +||+..-...+++  .++.+++++....||...|.++.|  +|..+   ..|+++++|+.+.|
T Consensus       343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsW--np~eP---W~I~SvaeDN~LqI  400 (422)
T KOG0264|consen  343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSW--NPNEP---WTIASVAEDNILQI  400 (422)
T ss_pred             EEeccccccccChhhhccCCcceeEEecCcccccccccC--CCCCC---eEEEEecCCceEEE
Confidence            9999886655544  244677888999999999999999  99985   56888999988765

>KOG0293|consensus

Probab=100.00  E-value=5.3e-32  Score=213.46  Aligned_cols=241  Identities=17%  Similarity=0.245  Sum_probs=196.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|..+.||||.+||++|+.|..+++||+.++...              ..+...++..+.+++|       .|||..++
T Consensus       270 ~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~--------------~~y~~~~~~S~~sc~W-------~pDg~~~V  328 (519)
T KOG0293|consen  270 QPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR--------------HLYPSGLGFSVSSCAW-------CPDGFRFV  328 (519)
T ss_pred             CceEEEEECCCCCeEEecCchHheeeccCCcchhh--------------hhcccCcCCCcceeEE-------ccCCceeE
Confidence            57999999999999999999999999999999876              3444334567777777       55999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +|+.|+.+..||+. |......+....    ..|.+++.++||+++++.. |..|++|+.++  +...    .......+
T Consensus       329 ~Gs~dr~i~~wdlD-gn~~~~W~gvr~----~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~--~~dr----~lise~~~  397 (519)
T KOG0293|consen  329 TGSPDRTIIMWDLD-GNILGNWEGVRD----PKVHDLAITYDGKYVLLVTVDKKIRLYNREA--RVDR----GLISEEQP  397 (519)
T ss_pred             ecCCCCcEEEecCC-cchhhccccccc----ceeEEEEEcCCCcEEEEEecccceeeechhh--hhhh----ccccccCc
Confidence            99999999999985 444444443221    1799999999999998665 99999999885  2222    13334578


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCC--eEEEEEcc-CCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG--ITHLEFSS-NGILLFSGARKDCEIICWDLRNPGCI  237 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~~~~~~  237 (334)
                      |+++..+.+++ ++++.-.+..+++||++..+.++.+.||...  +-.-+|-- +..++++|+ +|+.|+||+..+ +++
T Consensus       398 its~~iS~d~k-~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-ED~kvyIWhr~s-gkl  474 (519)
T KOG0293|consen  398 ITSFSISKDGK-LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS-EDSKVYIWHRIS-GKL  474 (519)
T ss_pred             eeEEEEcCCCc-EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC-CCceEEEEEccC-Cce
Confidence            99999999999 8888889999999999999999999988754  22334533 557999999 999999999998 999


Q ss_pred             ceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCC
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~  279 (334)
                      +..+.+|  ...+.+++|+|.. .++|+++.||+|+||-....
T Consensus       475 l~~LsGH--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  475 LAVLSGH--SKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             eEeecCC--cceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            9999998  6788999999965 67899999999999987653

>KOG0268|consensus

Probab=100.00  E-value=1.7e-32  Score=212.83  Aligned_cols=273  Identities=14%  Similarity=0.173  Sum_probs=217.4

Q ss_pred             CceeEEEEcCCC-cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDG-TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      |.|.|++=+|.. ..+|+|+.||.|+|||+......              ..+.. |.+.|.++++         +...+
T Consensus        67 dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--------------~~f~A-H~G~V~Gi~v---------~~~~~  122 (433)
T KOG0268|consen   67 DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--------------RTFKA-HEGLVRGICV---------TQTSF  122 (433)
T ss_pred             cccchhhcCcchhhhhhccccCceEEEEehhhhhhh--------------heeec-ccCceeeEEe---------cccce
Confidence            678899999976 68999999999999999988765              35554 5588999888         33678


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      ++++.|.+|+.|.++. ..+.++-+..      .+..+.-+..+..+++++ ..|.|||... ..++.    .+......
T Consensus       123 ~tvgdDKtvK~wk~~~-~p~~tilg~s------~~~gIdh~~~~~~FaTcG-e~i~IWD~~R-~~Pv~----smswG~Dt  189 (433)
T KOG0268|consen  123 FTVGDDKTVKQWKIDG-PPLHTILGKS------VYLGIDHHRKNSVFATCG-EQIDIWDEQR-DNPVS----SMSWGADS  189 (433)
T ss_pred             EEecCCcceeeeeccC-Ccceeeeccc------cccccccccccccccccC-ceeeeccccc-CCccc----eeecCCCc
Confidence            8999999999998754 3555554422      456666665556666554 3699999986 44554    45556678


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      |.++.|+|....+|+++..|+.|.+||++++.+++.+. -...-+.++|+|.+-.+++++ +|..++.||++....++..
T Consensus       190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~-ED~nlY~~DmR~l~~p~~v  267 (433)
T KOG0268|consen  190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAAN-EDHNLYTYDMRNLSRPLNV  267 (433)
T ss_pred             eeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeecc-ccccceehhhhhhcccchh
Confidence            99999999998789999999999999999999887765 234556899999887888888 9999999999987778888


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV  320 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~  320 (334)
                      +.+|  ...++.++|||.|+.+++|+.|.+|+||.+..+...          .+..-+ -...|.++.|  +.|.    +
T Consensus       268 ~~dh--vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SR----------diYhtk-RMq~V~~Vk~--S~Ds----k  328 (433)
T KOG0268|consen  268 HKDH--VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSR----------DIYHTK-RMQHVFCVKY--SMDS----K  328 (433)
T ss_pred             hccc--ceeEEEeccCCCcchhccccccceEEEeecCCCcch----------hhhhHh-hhheeeEEEE--eccc----c
Confidence            8877  668999999999999999999999999999987432          121111 1246899999  9999    9


Q ss_pred             eEEeeecceeee
Q psy2305         321 ADATCSGQITNV  332 (334)
Q Consensus       321 ~l~t~~~d~~i~  332 (334)
                      ++++||+|+.|.
T Consensus       329 yi~SGSdd~nvR  340 (433)
T KOG0268|consen  329 YIISGSDDGNVR  340 (433)
T ss_pred             EEEecCCCccee
Confidence            999999999875

>KOG0282|consensus

Probab=100.00  E-value=1.2e-32  Score=221.07  Aligned_cols=243  Identities=14%  Similarity=0.216  Sum_probs=203.2

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS  133 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~  133 (334)
                      +|...|.++.|.|.      .+.+|++++.|+.|+||++.. +++++++.+|..     +|..++|+++|..+++++ |+
T Consensus       212 gH~kgvsai~~fp~------~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k-----~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  212 GHTKGVSAIQWFPK------KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK-----PVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             CCccccchhhhccc------eeeEEEecCCCceEEEEEEecCcceehhhhcchh-----hhhhhhccccCCeeeeeecce
Confidence            45677888888542      788999999999999999876 889999998776     999999999999999887 99


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG  213 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  213 (334)
                      .+++||+++ |+....     ......++|+.|+|++.+.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|
T Consensus       281 ~lKlwDtET-G~~~~~-----f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g  354 (503)
T KOG0282|consen  281 FLKLWDTET-GQVLSR-----FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG  354 (503)
T ss_pred             eeeeecccc-ceEEEE-----EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC
Confidence            999999998 666553     23345789999999997699999999999999999999999999999999999999999


Q ss_pred             cEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccc
Q psy2305         214 ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEP  293 (334)
Q Consensus       214 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  293 (334)
                      +++++.+ +|++++||+.+. ..+++.+. ........++..+|++++++.=+.|+.|.++.+...-..         ..
T Consensus       355 ~rFissS-Ddks~riWe~~~-~v~ik~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~---------nk  422 (503)
T KOG0282|consen  355 RRFISSS-DDKSVRIWENRI-PVPIKNIA-DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL---------NK  422 (503)
T ss_pred             ceEeeec-cCccEEEEEcCC-Cccchhhc-chhhccCcceecCCCCCeehhhccCceEEEEeccccccc---------CH
Confidence            9999999 899999999987 33333222 222344556788999999999999999999987664322         44


Q ss_pred             cceecccc--cccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         294 LYKFSAHQ--DCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       294 ~~~~~~~~--~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ...+.+|.  +.-..+.|  ||||    ++|++|+.||.+.+
T Consensus       423 kK~feGh~vaGys~~v~f--SpDG----~~l~SGdsdG~v~~  458 (503)
T KOG0282|consen  423 KKRFEGHSVAGYSCQVDF--SPDG----RTLCSGDSDGKVNF  458 (503)
T ss_pred             hhhhcceeccCceeeEEE--cCCC----CeEEeecCCccEEE
Confidence            56677775  35567889  9999    99999999999875

>KOG0274|consensus

Probab=100.00  E-value=7.9e-31  Score=225.83  Aligned_cols=264  Identities=20%  Similarity=0.271  Sum_probs=220.6

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCccee-eeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYT-LKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      +.+..|.  +.++++++.+++|++|+...+..+              .. +. +|.+.|.++++       ..-+.+|++
T Consensus       211 ~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i--------------~~~l~-GH~g~V~~l~~-------~~~~~~lvs  266 (537)
T KOG0274|consen  211 VLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI--------------LTRLV-GHFGGVWGLAF-------PSGGDKLVS  266 (537)
T ss_pred             hhhheee--cCeEEecCCCceeEEeecccceEE--------------Eeecc-CCCCCceeEEE-------ecCCCEEEE
Confidence            5566666  457899999999999999998876              34 44 46688999888       225789999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      |+.|.++++||..+|++...+..|..     .+.++...+  ..+++|+ |.+|++|++++ +..+.    .+.+|..+|
T Consensus       267 gS~D~t~rvWd~~sg~C~~~l~gh~s-----tv~~~~~~~--~~~~sgs~D~tVkVW~v~n-~~~l~----l~~~h~~~V  334 (537)
T KOG0274|consen  267 GSTDKTERVWDCSTGECTHSLQGHTS-----SVRCLTIDP--FLLVSGSRDNTVKVWDVTN-GACLN----LLRGHTGPV  334 (537)
T ss_pred             EecCCcEEeEecCCCcEEEEecCCCc-----eEEEEEccC--ceEeeccCCceEEEEeccC-cceEE----EeccccccE
Confidence            99999999999999999999998665     677776553  4666777 99999999996 55555    456699999


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC-cccee
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG-CILHT  240 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~-~~~~~  240 (334)
                      +++..+  +. ++++|+.|++|.+||+.++++++++.+|...|+++.+.+. ..+++|+ .|++|++||+++ . +++..
T Consensus       335 ~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~IkvWdl~~-~~~c~~t  408 (537)
T KOG0274|consen  335 NCVQLD--EP-LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS-LDTTIKVWDLRT-KRKCIHT  408 (537)
T ss_pred             EEEEec--CC-EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee-eccceEeecCCc-hhhhhhh
Confidence            999998  55 9999999999999999999999999999999999988765 7999999 999999999998 5 78888


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc-cccccceeeeccCCCcccce
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA-HQDCTNGVRWKHHKFERDLL  319 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~s~~~~~~~  319 (334)
                      +.+|..  .+..  +...+++|++++.|++|++||..++            +.+..+.+ |...|..+++  .  .    
T Consensus       409 l~~h~~--~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~------------~~~~~~~~~~~~~v~~l~~--~--~----  464 (537)
T KOG0274|consen  409 LQGHTS--LVSS--LLLRDNFLVSSSADGTIKLWDAEEG------------ECLRTLEGRHVGGVSALAL--G--K----  464 (537)
T ss_pred             hcCCcc--cccc--cccccceeEeccccccEEEeecccC------------ceeeeeccCCcccEEEeec--C--c----
Confidence            887733  3333  3457889999999999999999998            67778877 6678888888  5  5    


Q ss_pred             eeEEeeecceeeee
Q psy2305         320 VADATCSGQITNVK  333 (334)
Q Consensus       320 ~~l~t~~~d~~i~~  333 (334)
                      ..+++++.||++++
T Consensus       465 ~~il~s~~~~~~~l  478 (537)
T KOG0274|consen  465 EEILCSSDDGSVKL  478 (537)
T ss_pred             ceEEEEecCCeeEE
Confidence            67999999999875

>KOG0647|consensus

Probab=100.00  E-value=1.2e-30  Score=197.95  Aligned_cols=269  Identities=14%  Similarity=0.159  Sum_probs=207.7

Q ss_pred             CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCC-CceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSE-LHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      |+|.+|+||| ...+++.++.||+||+|+++.. ...              ......+.++|.+++|       +.||..
T Consensus        28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~--------------~ka~~~~~~PvL~v~W-------sddgsk   86 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV--------------PKAQQSHDGPVLDVCW-------SDDGSK   86 (347)
T ss_pred             cchheeEeccccCceEEecccCCceEEEEEecCCccc--------------chhhhccCCCeEEEEE-------ccCCce
Confidence            7899999999 4556678999999999999873 433              2334457789999999       779999


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC--EEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN--KIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +++|+.|+.+++||+.+++. ..+..|..     +|.++.|-+...  .|++|+ |++|+.||++. ..++..     ..
T Consensus        87 Vf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~-----pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-~~pv~t-----~~  154 (347)
T KOG0647|consen   87 VFSGGCDKQAKLWDLASGQV-SQVAAHDA-----PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-SNPVAT-----LQ  154 (347)
T ss_pred             EEeeccCCceEEEEccCCCe-eeeeeccc-----ceeEEEEecCCCcceeEecccccceeecccCC-CCeeee-----ee
Confidence            99999999999999999954 45555554     899999988765  788998 99999999996 444432     22


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe-ec-cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF-LK-GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP  234 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~  234 (334)
                      -.+.+.++..-.  . +++++..++.|.+|+++++..... .. .-.-.+++++..++....+.|+ -+|.+.+..+..+
T Consensus       155 LPeRvYa~Dv~~--p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs-iEGrv~iq~id~~  230 (347)
T KOG0647|consen  155 LPERVYAADVLY--P-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS-IEGRVAIQYIDDP  230 (347)
T ss_pred             ccceeeehhccC--c-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee-ecceEEEEecCCC
Confidence            245566665533  3 888899999999999977633221 11 1233578999999888889999 8999999998862


Q ss_pred             -CccceeecccccC-------CceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccce
Q psy2305         235 -GCILHTFPRQVST-------NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG  306 (334)
Q Consensus       235 -~~~~~~~~~~~~~-------~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  306 (334)
                       ...-..|+.|...       -.+.+++|+|....|++++.||++.+||-...            ..+.....|..+|++
T Consensus       231 ~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar------------~kLk~s~~~~qpItc  298 (347)
T KOG0647|consen  231 NPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR------------TKLKTSETHPQPITC  298 (347)
T ss_pred             CccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh------------hhhhccCcCCCccce
Confidence             1333455555421       13557899999999999999999999998886            567777888999999


Q ss_pred             eeeccCCCcccceeeEEee
Q psy2305         307 VRWKHHKFERDLLVADATC  325 (334)
Q Consensus       307 ~~~~~s~~~~~~~~~l~t~  325 (334)
                      .+|  +.+|    .++|-+
T Consensus       299 c~f--n~~G----~ifaYA  311 (347)
T KOG0647|consen  299 CSF--NRNG----SIFAYA  311 (347)
T ss_pred             eEe--cCCC----CEEEEE
Confidence            999  9999    887765

>KOG0306|consensus

Probab=100.00  E-value=2.9e-31  Score=223.70  Aligned_cols=245  Identities=16%  Similarity=0.241  Sum_probs=207.3

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .+.+..|-|.++++++|...|.+.+||+.+....              .+++ .|.+.|++++-       +||++.+++
T Consensus       414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~--------------Eti~-AHdgaIWsi~~-------~pD~~g~vT  471 (888)
T KOG0306|consen  414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLV--------------ETIR-AHDGAIWSISL-------SPDNKGFVT  471 (888)
T ss_pred             cEEEEEecCCCceEEEeccCCceEEEEeehhhhh--------------hhhh-ccccceeeeee-------cCCCCceEE
Confidence            5778899999999999999999999999988765              2444 56788888666       789999999


Q ss_pred             eeCCCcEEEEeCCC-----CeeeEEEcCcc--ccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          83 SSMYAPIHLWDSVG-----GEIKATYRPYN--QVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        83 ~~~d~~i~iwd~~~-----~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      |+.|.+|++||..-     |...+.+..+.  ...-...|.|+.+||||++|+++- |+++++|-+++ -+...    .+
T Consensus       472 ~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-lKFfl----sL  546 (888)
T KOG0306|consen  472 GSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-LKFFL----SL  546 (888)
T ss_pred             ecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-eeeee----ee
Confidence            99999999998641     22211111110  111112799999999999999997 99999999996 33333    68


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP  234 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~  234 (334)
                      .+|+-||.|+..+||++ +++||+.|.+|++|-+.-|.+.+++.+|...|+++.|-|....+++++ .|+.++-||-.. 
T Consensus       547 YGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~g-KD~kvKqWDg~k-  623 (888)
T KOG0306|consen  547 YGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCG-KDGKVKQWDGEK-  623 (888)
T ss_pred             cccccceeEEeccCCcC-eEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEec-CcceEEeechhh-
Confidence            99999999999999999 999999999999999999999999999999999999999999999999 899999999987 


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      -..+..+.+|  ...+++++.+|+|.++++++.|.+|++|.....
T Consensus       624 Fe~iq~L~~H--~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  624 FEEIQKLDGH--HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             hhhheeeccc--hheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence            6778888887  567888999999999999999999999987653

>KOG0299|consensus

Probab=100.00  E-value=1.3e-30  Score=208.13  Aligned_cols=286  Identities=17%  Similarity=0.212  Sum_probs=222.1

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCC---C-CCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPS---N-QRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      -+|.+++++||+++.++++.+++|.-|++.++.....+....   . ...++...-. .|...+.++       ++|+|+
T Consensus       143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~-~h~keil~~-------avS~Dg  214 (479)
T KOG0299|consen  143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRK-GHVKEILTL-------AVSSDG  214 (479)
T ss_pred             CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccc-cccceeEEE-------EEcCCC
Confidence            368999999999999999999999999999887553222221   0 1111111111 344555554       458899


Q ss_pred             cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      ++|++|+.|..|.||+..+.+.++.+..|..     .|.+++|-.....|++++ |+.+++|+++. ...+.    ++.+
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~-----~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s~ve----tlyG  284 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRG-----AVSSLAFRKGTSELYSASADRSVKVWSIDQ-LSYVE----TLYG  284 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhccccccc-----ceeeeeeecCccceeeeecCCceEEEehhH-hHHHH----HHhC
Confidence            9999999999999999999999998887655     899999998888888877 99999999985 22333    6899


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      |...|.++....-++ .+.+|+.|+++++|++.. +....+.++.+.+.|++|-.+ ..+++|+ .+|.|.+|++.. .+
T Consensus       285 Hqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGS-dnG~IaLWs~~K-Kk  359 (479)
T KOG0299|consen  285 HQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGS-DNGSIALWSLLK-KK  359 (479)
T ss_pred             Cccceeeechhcccc-eEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeecc-CCceEEEeeecc-cC
Confidence            999999999998888 788888999999999943 334456788889999999754 5788999 899999999987 66


Q ss_pred             cceeecc-c-ccC--------CceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccce
Q psy2305         237 ILHTFPR-Q-VST--------NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG  306 (334)
Q Consensus       237 ~~~~~~~-~-~~~--------~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  306 (334)
                      ++..... | ...        .++.+++..|...++++|+.+|.|++|.+..+-..        ..++..+. -.+.|++
T Consensus       360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~--------i~~l~~ls-~~GfVNs  430 (479)
T KOG0299|consen  360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA--------INLLYSLS-LVGFVNS  430 (479)
T ss_pred             ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc--------cceeeecc-cccEEEE
Confidence            6655432 1 111        27889999999999999999999999999987211        14555555 4678999


Q ss_pred             eeeccCCCcccceeeEEee
Q psy2305         307 VRWKHHKFERDLLVADATC  325 (334)
Q Consensus       307 ~~~~~s~~~~~~~~~l~t~  325 (334)
                      ++|  +++|    +.|++|
T Consensus       431 l~f--~~sg----k~ivag  443 (479)
T KOG0299|consen  431 LAF--SNSG----KRIVAG  443 (479)
T ss_pred             EEE--ccCC----CEEEEe
Confidence            999  9999    866665

>KOG1036|consensus

Probab=99.98  E-value=2.8e-29  Score=191.15  Aligned_cols=268  Identities=14%  Similarity=0.164  Sum_probs=209.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      |.|.++.|+|.+..|++++.||.+++|+.......                +...++.++.+++|.        +...++
T Consensus        14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----------------~~~~~~~plL~c~F~--------d~~~~~   69 (323)
T KOG1036|consen   14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----------------LKFKHGAPLLDCAFA--------DESTIV   69 (323)
T ss_pred             hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----------------hheecCCceeeeecc--------CCceEE
Confidence            67999999999999999999999999999987543                333467899999884        355789


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +|+-||.|+.+|+.++.... +..|..     ++.++.+++....+++|+ |++|++||.+.  +...    ........
T Consensus        70 ~G~~dg~vr~~Dln~~~~~~-igth~~-----~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~--~~~~----~~~d~~kk  137 (323)
T KOG1036|consen   70 TGGLDGQVRRYDLNTGNEDQ-IGTHDE-----GIRCIEYSYEVGCVISGSWDKTIKFWDPRN--KVVV----GTFDQGKK  137 (323)
T ss_pred             EeccCceEEEEEecCCccee-eccCCC-----ceEEEEeeccCCeEEEcccCccEEEEeccc--cccc----cccccCce
Confidence            99999999999998887654 333333     899999999888888888 99999999984  2211    12333447


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee--ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC---
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG---  235 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~---  235 (334)
                      |.++....+   .|++|+.+..+.+||+++.......  ..-.-.++++++-|++.-.++++ -||.+.+=.++...   
T Consensus       138 Vy~~~v~g~---~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE~~d~s~~~~  213 (323)
T KOG1036|consen  138 VYCMDVSGN---RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVEYFDDSEEAQ  213 (323)
T ss_pred             EEEEeccCC---EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe-ecceEEEEccCCchHHh
Confidence            888876544   8889999999999999986543322  22345688999999888888888 89999887666521   


Q ss_pred             ccceeeccccc-------CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceee
Q psy2305         236 CILHTFPRQVS-------TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR  308 (334)
Q Consensus       236 ~~~~~~~~~~~-------~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  308 (334)
                      .....|+.|..       -.++.+++|+|-...|++|+.||.|.+||+.+.            +.+..+......|.+++
T Consensus       214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r------------Krl~q~~~~~~SI~sls  281 (323)
T KOG1036|consen  214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR------------KRLKQLAKYETSISSLS  281 (323)
T ss_pred             hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch------------hhhhhccCCCCceEEEE
Confidence            22233444322       235778999999999999999999999999998            66777777777899999


Q ss_pred             eccCCCcccceeeEEeeec
Q psy2305         309 WKHHKFERDLLVADATCSG  327 (334)
Q Consensus       309 ~~~s~~~~~~~~~l~t~~~  327 (334)
                      |  +.+|    ..||+++.
T Consensus       282 f--s~dG----~~LAia~s  294 (323)
T KOG1036|consen  282 F--SMDG----SLLAIASS  294 (323)
T ss_pred             e--ccCC----CeEEEEec
Confidence            9  9999    99999874

>KOG0275|consensus

Probab=99.98  E-value=2.4e-31  Score=204.11  Aligned_cols=238  Identities=13%  Similarity=0.142  Sum_probs=199.4

Q ss_pred             ccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCcccc---ccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCC
Q psy2305          69 KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQV---DEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPG  144 (334)
Q Consensus        69 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~  144 (334)
                      .+..|||||++|++|+.||.|.+||..+|+..+.++-....   ....+|.|+.|+.|...|++|+ ||.|++|.+.+ +
T Consensus       217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G  295 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-G  295 (508)
T ss_pred             hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-c
Confidence            45566999999999999999999999999876655432111   1122899999999999999998 99999999998 7


Q ss_pred             CeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305         145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                      ..++.   .-..|...|+|+.|+.|+. .+++++.|.++++.-+.+|++++.+.+|...|+...|+++|..+++++ .||
T Consensus       296 ~ClRr---FdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS-sDg  370 (508)
T KOG0275|consen  296 QCLRR---FDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS-SDG  370 (508)
T ss_pred             hHHHH---hhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec-CCc
Confidence            66664   3458999999999999999 999999999999999999999999999999999999999999999999 899


Q ss_pred             eEEEEEccCCCccceeecccccCCceEEEEecCC-CceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccc---
Q psy2305         225 EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC-SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH---  300 (334)
Q Consensus       225 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---  300 (334)
                      ++++|+..+ ..++.+++.......+.++-.-|. -..++++...+++.|.++..             +.+..+...   
T Consensus       371 tvkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-------------QvVrsfsSGkRE  436 (508)
T KOG0275|consen  371 TVKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-------------QVVRSFSSGKRE  436 (508)
T ss_pred             cEEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-------------eEEeeeccCCcc
Confidence            999999998 888888887666667777665564 46788888889999999887             455555432   


Q ss_pred             ccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         301 QDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      .+...+.+.  +|.|    .++...++|+.++
T Consensus       437 gGdFi~~~l--SpkG----ewiYcigED~vlY  462 (508)
T KOG0275|consen  437 GGDFINAIL--SPKG----EWIYCIGEDGVLY  462 (508)
T ss_pred             CCceEEEEe--cCCC----cEEEEEccCcEEE
Confidence            234556778  9999    9999999999876

>KOG1446|consensus

Probab=99.98  E-value=6.4e-29  Score=190.01  Aligned_cols=238  Identities=13%  Similarity=0.076  Sum_probs=197.9

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e--CC
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F--LS  133 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~--d~  133 (334)
                      ....|.++.|       +++|.++++++.|..+++||..+++.++++..++.     .+..++|....+.++.+ .  |.
T Consensus        13 ~~~~i~sl~f-------s~~G~~litss~dDsl~LYd~~~g~~~~ti~skky-----G~~~~~Fth~~~~~i~sStk~d~   80 (311)
T KOG1446|consen   13 TNGKINSLDF-------SDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-----GVDLACFTHHSNTVIHSSTKEDD   80 (311)
T ss_pred             CCCceeEEEe-------cCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc-----cccEEEEecCCceEEEccCCCCC
Confidence            3467777776       78999999999999999999999999999988776     78889998777666644 3  89


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG  213 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  213 (334)
                      +|+..++.+ .+.++    .+.+|...|++++.+|-+. .+++++.|++|++||++..++...+.....+  .++|.|.|
T Consensus        81 tIryLsl~d-NkylR----YF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~G  152 (311)
T KOG1446|consen   81 TIRYLSLHD-NKYLR----YFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEG  152 (311)
T ss_pred             ceEEEEeec-CceEE----EcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCC
Confidence            999999996 55565    7999999999999999998 9999999999999999988888777644444  48899999


Q ss_pred             cEEEeeecCCCeEEEEEccCC-Cccceeeccc-ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccc
Q psy2305         214 ILLFSGARKDCEIICWDLRNP-GCILHTFPRQ-VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQ  291 (334)
Q Consensus       214 ~~l~~~~~~d~~i~iwd~~~~-~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  291 (334)
                      -++|++. ..+.|++||++.. +.+...+.-. ........+.|||||++++.+...+.+++.|.-+|            
T Consensus       153 LifA~~~-~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G------------  219 (311)
T KOG1446|consen  153 LIFALAN-GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG------------  219 (311)
T ss_pred             cEEEEec-CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC------------
Confidence            9999998 6779999999975 3455555433 23456778999999999999999999999999998            


Q ss_pred             cccceecccccc---cceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         292 EPLYKFSAHQDC---TNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       292 ~~~~~~~~~~~~---i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ..+..+..+...   -.+.+|  +||+    +++++|+.||++.+
T Consensus       220 ~~~~tfs~~~~~~~~~~~a~f--tPds----~Fvl~gs~dg~i~v  258 (311)
T KOG1446|consen  220 TVKSTFSGYPNAGNLPLSATF--TPDS----KFVLSGSDDGTIHV  258 (311)
T ss_pred             cEeeeEeeccCCCCcceeEEE--CCCC----cEEEEecCCCcEEE
Confidence            566666655432   257789  9999    99999999999875

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=4.2e-29  Score=214.91  Aligned_cols=231  Identities=14%  Similarity=0.146  Sum_probs=175.3

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeE-------------EEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEE
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKA-------------TYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIF  138 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~  138 (334)
                      ++++..+++++.+.....|+...+..+.             .+.+|.     +.|.+++|+| ++++|++++ |++|++|
T Consensus        29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~-----~~V~~v~fsP~d~~~LaSgS~DgtIkIW  103 (493)
T PTZ00421         29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE-----GPIIDVAFNPFDPQKLFTASEDGTIMGW  103 (493)
T ss_pred             cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC-----CCEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence            4465556666666666667654433221             223322     2899999999 888999887 9999999


Q ss_pred             EcCCCCC------eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccC
Q psy2305         139 STDRPGR------ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN  212 (334)
Q Consensus       139 d~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  212 (334)
                      |+...+.      .+.    .+.+|...|.+++|+|++.++|++++.|+.|++||+++++.+..+.+|...|.+++|+|+
T Consensus       104 di~~~~~~~~~~~~l~----~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd  179 (493)
T PTZ00421        104 GIPEEGLTQNISDPIV----HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD  179 (493)
T ss_pred             ecCCCccccccCcceE----EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence            9975321      122    568899999999999987449999999999999999999999999999999999999999


Q ss_pred             CcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee----cCCcEEEEeCCCCCCCCCCCcc
Q psy2305         213 GILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN----TNGDLSIWNVNTSNLPSSPYEE  288 (334)
Q Consensus       213 ~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~  288 (334)
                      |++|++++ .|+.|++||+++ ++.+..+..|... ....+.|.+++..+++++    .|+.|++||++...        
T Consensus       180 G~lLatgs-~Dg~IrIwD~rs-g~~v~tl~~H~~~-~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~--------  248 (493)
T PTZ00421        180 GSLLCTTS-KDKKLNIIDPRD-GTIVSSVEAHASA-KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA--------  248 (493)
T ss_pred             CCEEEEec-CCCEEEEEECCC-CcEEEEEecCCCC-cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC--------
Confidence            99999999 899999999998 6667777766322 233566888887777654    47899999998753        


Q ss_pred             ccccccceeccc-ccccceeeeccCCCcccceeeEEeee-cceeeee
Q psy2305         289 SVQEPLYKFSAH-QDCTNGVRWKHHKFERDLLVADATCS-GQITNVK  333 (334)
Q Consensus       289 ~~~~~~~~~~~~-~~~i~~~~~~~s~~~~~~~~~l~t~~-~d~~i~~  333 (334)
                         .++.....+ ...+....|  ++++    .+|++++ .|+.|++
T Consensus       249 ---~p~~~~~~d~~~~~~~~~~--d~d~----~~L~lggkgDg~Iri  286 (493)
T PTZ00421        249 ---SPYSTVDLDQSSALFIPFF--DEDT----NLLYIGSKGEGNIRC  286 (493)
T ss_pred             ---CceeEeccCCCCceEEEEE--cCCC----CEEEEEEeCCCeEEE
Confidence               233333322 234556678  9999    8988887 4998865

>KOG2096|consensus

Probab=99.97  E-value=1.2e-29  Score=194.12  Aligned_cols=285  Identities=15%  Similarity=0.159  Sum_probs=202.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|+.||++|||++.|++|+||+++.....+        ..-+...+..          -+|+.+.|+||-+-++
T Consensus        87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e--------Hr~~R~nve~----------dhpT~V~FapDc~s~v  148 (420)
T KOG2096|consen   87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE--------HRCIRQNVEY----------DHPTRVVFAPDCKSVV  148 (420)
T ss_pred             CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh--------hhHhhccccC----------CCceEEEECCCcceEE
Confidence            569999999999999999999999999998754431        0000011111          1455567788877655


Q ss_pred             E-eeCCCcEEEEeCCC---CeeeEEEcCc----cccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305          82 C-SSMYAPIHLWDSVG---GEIKATYRPY----NQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        82 ~-~~~d~~i~iwd~~~---~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      + +-+..++++|.+..   |.....+...    -+..+...+..+-....+.+|++++ |..|.+|++.  ++.+..   
T Consensus       149 v~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~---  223 (420)
T KOG2096|consen  149 VSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQS---  223 (420)
T ss_pred             EEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--Cceeee---
Confidence            4 44556789986532   2221111100    0111122566677777889999888 9999999999  777764   


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEEC---CCC-----CceEeeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSD---SDG-----RPLFFLKGHNGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~---~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                       .......-+..+.+|+|+ ++++++..-.|++|.+   +.|     ..+..+++|...|..++|+|+.+.+++.+ .||
T Consensus       224 -idtnq~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-kDG  300 (420)
T KOG2096|consen  224 -IDTNQSSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-KDG  300 (420)
T ss_pred             -eccccccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-cCC
Confidence             444445556778999999 9999999999999987   222     34567899999999999999999999999 899


Q ss_pred             eEEEEEccCC------Cccceeec--ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccce
Q psy2305         225 EIICWDLRNP------GCILHTFP--RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK  296 (334)
Q Consensus       225 ~i~iwd~~~~------~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  296 (334)
                      ++++||++-.      .+.+++..  .+..+.....+.++|.|+.|+.+. ...++++..++++.           .-..
T Consensus       301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~-----------~~~~  368 (420)
T KOG2096|consen  301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKD-----------YPEL  368 (420)
T ss_pred             cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCcc-----------chhH
Confidence            9999998631      11222221  222344556899999999998765 45799999999842           2222


Q ss_pred             ecccccccceeeeccCCCcccceeeEEeeeccee
Q psy2305         297 FSAHQDCTNGVRWKHHKFERDLLVADATCSGQIT  330 (334)
Q Consensus       297 ~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~  330 (334)
                      -..|...|.+++|  +++|    +++||+|+.-.
T Consensus       369 e~~h~~~Is~is~--~~~g----~~~atcGdr~v  396 (420)
T KOG2096|consen  369 EDIHSTTISSISY--SSDG----KYIATCGDRYV  396 (420)
T ss_pred             HHhhcCceeeEEe--cCCC----cEEeeecceee
Confidence            3458889999999  9999    99999987543

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=5e-29  Score=215.48  Aligned_cols=226  Identities=13%  Similarity=0.126  Sum_probs=172.0

Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC-CCEEEEee-CCcEEEEEcCCCCCeeee---eccccccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD-GNKIYAGF-LSEVKIFSTDRPGRECVS---RNLKPWFR  157 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~---~~~~~~~~  157 (334)
                      |+.++.|++|+......+..+..|..     .|.+++|+|+ +.+|++|+ |+.|++||+...+.....   ....+.+|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~-----~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTS-----SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCC-----CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence            55678899999877767777776554     8999999997 78899887 999999999863321110   00035789


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI  237 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~  237 (334)
                      ...|.+++|+|++..++++++.|+.|++||+++++.+..+. |...|.+++|+|+|++|++++ .|+.|+|||+++ +..
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rs-g~~  201 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRK-QEI  201 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCC-CcE
Confidence            99999999999998456899999999999999998877776 667899999999999999999 899999999998 777


Q ss_pred             ceeecccccCCce---EEEEecCCCceEEeeecCC----cEEEEeCCCCCCCCCCCccccccccceecc--cccccceee
Q psy2305         238 LHTFPRQVSTNQR---VYFDLTSCSNYLLSGNTNG----DLSIWNVNTSNLPSSPYEESVQEPLYKFSA--HQDCTNGVR  308 (334)
Q Consensus       238 ~~~~~~~~~~~~~---~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~  308 (334)
                      +..+.+|......   ....|++++.+|++++.|+    .|+|||++...           +++..+..  +.+.+.-..
T Consensus       202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-----------~pl~~~~ld~~~~~L~p~~  270 (568)
T PTZ00420        202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-----------SALVTMSIDNASAPLIPHY  270 (568)
T ss_pred             EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----------CceEEEEecCCccceEEee
Confidence            7778777433222   2234678999999888764    79999999642           34444332  223333333


Q ss_pred             eccCCCcccceeeEEeeecceeeee
Q psy2305         309 WKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       309 ~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .  .+++    .++++|+.|++|++
T Consensus       271 D--~~tg----~l~lsGkGD~tIr~  289 (568)
T PTZ00420        271 D--ESTG----LIYLIGKGDGNCRY  289 (568)
T ss_pred             e--CCCC----CEEEEEECCCeEEE
Confidence            3  4557    88999999999875

>KOG0308|consensus

Probab=99.97  E-value=3e-30  Score=214.31  Aligned_cols=247  Identities=17%  Similarity=0.244  Sum_probs=197.8

Q ss_pred             EEEc-CCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC
Q psy2305           7 VDEA-PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM   85 (334)
Q Consensus         7 ~~~s-p~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~   85 (334)
                      +..+ |.++||+|||+||.|++|+.........        ......+ .+|...|+++.-       ..+++.|++++.
T Consensus        30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s--------~~~~asm-e~HsDWVNDiiL-------~~~~~tlIS~Ss   93 (735)
T KOG0308|consen   30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS--------TPYIASM-EHHSDWVNDIIL-------CGNGKTLISASS   93 (735)
T ss_pred             ccccCCCCceEEecCCCceEEEeccccccCCcc--------cchhhhh-hhhHhHHhhHHh-------hcCCCceEEecC
Confidence            3444 4677899999999999999876543200        0001122 246667766544       458889999999


Q ss_pred             CCcEEEEeCCCC--eeeEEEcCccccccccceeEEEE-cCCCCEEEEee-CCcEEEEEcCCCCC-eeeee---cc-cc-c
Q psy2305          86 YAPIHLWDSVGG--EIKATYRPYNQVDEVTHAYSLAF-SLDGNKIYAGF-LSEVKIFSTDRPGR-ECVSR---NL-KP-W  155 (334)
Q Consensus        86 d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~-d~~i~i~d~~~~~~-~~~~~---~~-~~-~  155 (334)
                      |-+|++|+...+  -++.++..|..     .|.|+++ .++...+++|+ |+.|.+||+++... .....   .. .+ .
T Consensus        94 DtTVK~W~~~~~~~~c~stir~H~D-----YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s  168 (735)
T KOG0308|consen   94 DTTVKVWNAHKDNTFCMSTIRTHKD-----YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS  168 (735)
T ss_pred             CceEEEeecccCcchhHhhhhcccc-----hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence            999999999877  46667776554     8999999 77777888888 99999999996211 11000   00 22 3


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG  235 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~  235 (334)
                      ++...|.+++.++.|. .|++|+..+.|++||.++.+.+..+.+|...|..+..++||+.+++++ .||+|++||+.. .
T Consensus       169 G~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s-SDgtIrlWdLgq-Q  245 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS-SDGTIRLWDLGQ-Q  245 (735)
T ss_pred             CCccceeeeecCCcce-EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC-CCceEEeeeccc-c
Confidence            7889999999999998 999999999999999999999999999999999999999999999999 899999999997 7


Q ss_pred             ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .++.++..|  ...++++..+|+=..+++|+.||.|..=|+++.
T Consensus       246 rCl~T~~vH--~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  246 RCLATYIVH--KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ceeeeEEec--cCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            788888877  445888888999999999999999999999884

>KOG1408|consensus

Probab=99.97  E-value=3.8e-29  Score=210.19  Aligned_cols=291  Identities=16%  Similarity=0.168  Sum_probs=220.5

Q ss_pred             eEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccce-----ecCCCcE
Q psy2305           5 EDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSS-----IDGFTSY   79 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~s~~~~~   79 (334)
                      -++.|+|....|.+...|..++|||++.-....            ......-|...|+++.-.|..+.     --|.+ .
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvg------------k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-c  394 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVG------------KCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-C  394 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEecccccccc------------ceeeeeeccceeeeeccccccccCcccccCCcc-c
Confidence            367899988899999999999999998765431            11222235567777766552221     12223 4


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcC---------------------------c-----cccccccceeEEEEcCCCCEE
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRP---------------------------Y-----NQVDEVTHAYSLAFSLDGNKI  127 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~---------------------------~-----~~~~~~~~v~~~~~~~~~~~l  127 (334)
                      +++++.|++|++|+++.+..-..+..                           .     ...+....+.+++.+|+|++|
T Consensus       395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL  474 (1080)
T KOG1408|consen  395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL  474 (1080)
T ss_pred             eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence            88999999999999875221111000                           0     000112268999999999999


Q ss_pred             EEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC--CCcEEEEeecCCeEEEEECCC-CCceEeeccCCCC
Q psy2305         128 YAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSD-GRPLFFLKGHNGG  203 (334)
Q Consensus       128 ~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~  203 (334)
                      ++|. -|++++|++.. -....    ....|+..|.|+.|+..  +..+||+++.|+-|++||... -.+++++.+|...
T Consensus       475 AsGDr~GnlrVy~Lq~-l~~~~----~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss  549 (1080)
T KOG1408|consen  475 ASGDRGGNLRVYDLQE-LEYTC----FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS  549 (1080)
T ss_pred             cccCccCceEEEEehh-hhhhh----heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence            9998 89999999985 22222    57899999999999854  223899999999999999853 3445555555555


Q ss_pred             eEE-------------------------------------------------EEEccCCcEEEeeecCCCeEEEEEccCC
Q psy2305         204 ITH-------------------------------------------------LEFSSNGILLFSGARKDCEIICWDLRNP  234 (334)
Q Consensus       204 i~~-------------------------------------------------~~~~~~~~~l~~~~~~d~~i~iwd~~~~  234 (334)
                      |++                                                 |+..|+.+++++++ .|+.|+|||+.+ 
T Consensus       550 ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c-QDrnirif~i~s-  627 (1080)
T KOG1408|consen  550 ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC-QDRNIRIFDIES-  627 (1080)
T ss_pred             eeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe-cccceEEEeccc-
Confidence            444                                                 55556667888899 899999999998 


Q ss_pred             Cccceeeccccc-CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCC
Q psy2305         235 GCILHTFPRQVS-TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHK  313 (334)
Q Consensus       235 ~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~  313 (334)
                      ++..+.|++... .+....+...|.|-||++...|.++.++|..++            +++..+.+|...|+.+.|  .+
T Consensus       628 gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg------------EcvA~m~GHsE~VTG~kF--~n  693 (1080)
T KOG1408|consen  628 GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG------------ECVAQMTGHSEAVTGVKF--LN  693 (1080)
T ss_pred             cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc------------hhhhhhcCcchheeeeee--cc
Confidence            888888887543 467778889999999999999999999999999            889999999999999999  99


Q ss_pred             CcccceeeEEeeecceeeee
Q psy2305         314 FERDLLVADATCSGQITNVK  333 (334)
Q Consensus       314 ~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |.    +.|++.+.||-|.+
T Consensus       694 DC----kHlISvsgDgCIFv  709 (1080)
T KOG1408|consen  694 DC----KHLISVSGDGCIFV  709 (1080)
T ss_pred             cc----hhheeecCCceEEE
Confidence            99    99999999998864

>KOG0310|consensus

Probab=99.97  E-value=3.7e-29  Score=201.34  Aligned_cols=240  Identities=18%  Similarity=0.229  Sum_probs=195.6

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      |.|.+++|-.||++||+|...|.|+|||..+....              ..+. .|..++....|+|.      ++..++
T Consensus        69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL--------------R~~~-ah~apv~~~~f~~~------d~t~l~  127 (487)
T KOG0310|consen   69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL--------------RQLY-AHQAPVHVTKFSPQ------DNTMLV  127 (487)
T ss_pred             cceeEEEeecCCeEEEccCCcCcEEEeccccHHHH--------------HHHh-hccCceeEEEeccc------CCeEEE
Confidence            56899999999999999999999999996653322              2333 46688998888664      677788


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +|+.|+.+++||+.+......+..|..     .|.+.+|+|... .+++|+ ||.|++||++.......     ...|..
T Consensus       128 s~sDd~v~k~~d~s~a~v~~~l~~htD-----YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~-----elnhg~  197 (487)
T KOG0310|consen  128 SGSDDKVVKYWDLSTAYVQAELSGHTD-----YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV-----ELNHGC  197 (487)
T ss_pred             ecCCCceEEEEEcCCcEEEEEecCCcc-----eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE-----EecCCC
Confidence            999999999999998886556666444     999999999866 555787 99999999997443332     467889


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      +|..+.+-|.|. .+++++ ...+++||+-+| +.+..+..|...|+|+.+..++..|++++ -|+.+++||+.+ -+.+
T Consensus       198 pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd~t~-~Kvv  273 (487)
T KOG0310|consen  198 PVESVLALPSGS-LIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFDTTN-YKVV  273 (487)
T ss_pred             ceeeEEEcCCCC-EEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-cccceEEEEccc-eEEE
Confidence            999999999998 888876 568999999865 55555666999999999999999999999 999999999776 5555


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ..+.   .++++.+++.+|+++.++.|..||.+.+=+....
T Consensus       274 ~s~~---~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k  311 (487)
T KOG0310|consen  274 HSWK---YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK  311 (487)
T ss_pred             Eeee---cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence            5555   4788999999999999999999998877754443

>KOG1332|consensus

Probab=99.97  E-value=1e-29  Score=187.58  Aligned_cols=252  Identities=15%  Similarity=0.230  Sum_probs=193.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC-CCcEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG-FTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~l   80 (334)
                      |.|..+...-.|++|||++.|++|+|+..+......           +...+.+ |.++|..++|.      +| -|.+|
T Consensus        12 D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~-----------ll~~L~G-h~GPVwqv~wa------hPk~G~iL   73 (299)
T KOG1332|consen   12 DMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSK-----------LLAELTG-HSGPVWKVAWA------HPKFGTIL   73 (299)
T ss_pred             hhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCce-----------eeeEecC-CCCCeeEEeec------ccccCcEe
Confidence            345556666679999999999999999998765311           3345665 66899999994      33 68999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      |+++.||.|.||.-+.++..+...   +..+...|++++|.|.  |-.|++++ ||.|.+++.+..+.-...+  ....|
T Consensus        74 AScsYDgkVIiWke~~g~w~k~~e---~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k--i~~aH  148 (299)
T KOG1332|consen   74 ASCSYDGKVIIWKEENGRWTKAYE---HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK--IVFAH  148 (299)
T ss_pred             eEeecCceEEEEecCCCchhhhhh---hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh--hhhcc
Confidence            999999999999988775443332   3333348999999997  46777776 9999999998753322211  46789


Q ss_pred             ccceEEEEEcCC---C-----------CcEEEEeecCCeEEEEECCCC--CceEeeccCCCCeEEEEEccCC----cEEE
Q psy2305         158 KNIVSAIAINPV---H-----------PDICALGTYSKIIGLFSDSDG--RPLFFLKGHNGGITHLEFSSNG----ILLF  217 (334)
Q Consensus       158 ~~~v~~~~~~~~---~-----------~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l~  217 (334)
                      .-.|++++|.|.   |           + .|++|+.|..|+||+..++  +...+|.+|.+.|+.++|.|.-    .+|+
T Consensus       149 ~~GvnsVswapa~~~g~~~~~~~~~~~k-rlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA  227 (299)
T KOG1332|consen  149 EIGVNSVSWAPASAPGSLVDQGPAAKVK-RLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA  227 (299)
T ss_pred             ccccceeeecCcCCCccccccCcccccc-eeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence            999999999987   4           3 6999999999999998775  4456689999999999999964    4899


Q ss_pred             eeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         218 SGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       218 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      +++ .||++.||-.+....+-+.-.-+.....+..+.||+.|+.|++++.|+.|.+|.-..
T Consensus       228 S~S-qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  228 SCS-QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             Eec-CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            999 999999998875323222111222456788999999999999999999999997544

>KOG0283|consensus

Probab=99.97  E-value=1.7e-29  Score=215.97  Aligned_cols=247  Identities=15%  Similarity=0.197  Sum_probs=186.4

Q ss_pred             eeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeee-------------------------------
Q psy2305          52 TLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK-------------------------------  100 (334)
Q Consensus        52 ~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~-------------------------------  100 (334)
                      .+...|.+.|+++.|       |+||+|||+|+.|+.|+||.+...+..                               
T Consensus       261 e~~~ah~gaIw~mKF-------S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~  333 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKF-------SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS  333 (712)
T ss_pred             ccccccCCcEEEEEe-------CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence            344457788988877       789999999999999999977540000                               


Q ss_pred             -EE-------------Ec----------CccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccc
Q psy2305         101 -AT-------------YR----------PYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus       101 -~~-------------~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                       ..             +.          .+...++...|..+.|+.++ +|++++ |.+|++|++..  +.+.    ...
T Consensus       334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~--~~CL----~~F  406 (712)
T KOG0283|consen  334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR--KECL----KVF  406 (712)
T ss_pred             ccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC--ccee----eEE
Confidence             00             00          00011122378999999875 666666 99999999995  3333    467


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG  235 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~  235 (334)
                      .|...|+|++|+|...++|++|+-||.|+||++...+.+.-.. -..-|++++|.|||++.++|+ .+|.+++|+... .
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt-~~G~C~fY~t~~-l  483 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGT-FNGYCRFYDTEG-L  483 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEE-eccEEEEEEccC-C
Confidence            8999999999999888899999999999999998776655444 347899999999999999999 999999999986 4


Q ss_pred             ccceeecccc------cCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc--ccce
Q psy2305         236 CILHTFPRQV------STNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD--CTNG  306 (334)
Q Consensus       236 ~~~~~~~~~~------~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~  306 (334)
                      +......-+.      ....|+.+.|.|.. ..+++.+.|..|+|+|.+..            .++..|+++..  .=..
T Consensus       484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~------------~lv~KfKG~~n~~SQ~~  551 (712)
T KOG0283|consen  484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK------------DLVHKFKGFRNTSSQIS  551 (712)
T ss_pred             eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch------------hhhhhhcccccCCccee
Confidence            4333322111      12368889998754 34667778999999999887            67778887654  3346


Q ss_pred             eeeccCCCcccceeeEEeeecceeeee
Q psy2305         307 VRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       307 ~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ..|  +.||    ++|+++++|..||+
T Consensus       552 Asf--s~Dg----k~IVs~seDs~VYi  572 (712)
T KOG0283|consen  552 ASF--SSDG----KHIVSASEDSWVYI  572 (712)
T ss_pred             eeE--ccCC----CEEEEeecCceEEE
Confidence            788  9999    99999999999886

>KOG1274|consensus

Probab=99.97  E-value=2.2e-28  Score=210.68  Aligned_cols=259  Identities=18%  Similarity=0.224  Sum_probs=206.8

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .-+.++|.|+|++|++++.||.|++|+........             ..+.. ++..|.+++-         ++.+|++
T Consensus        15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-------------~ti~~-~g~~v~~ia~---------~s~~f~~   71 (933)
T KOG1274|consen   15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-------------ETIDI-SGELVSSIAC---------YSNHFLT   71 (933)
T ss_pred             ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-------------chhhc-cCceeEEEee---------cccceEE
Confidence            35789999999999999999999999987663210             12221 4566766655         5668999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      ++.+++|.+|.+.+++.-..+....-     ++++++|+.+|++++.|+ |-.|++.++.. .....    .+.+|..+|
T Consensus        72 ~s~~~tv~~y~fps~~~~~iL~Rftl-----p~r~~~v~g~g~~iaagsdD~~vK~~~~~D-~s~~~----~lrgh~apV  141 (933)
T KOG1274|consen   72 GSEQNTVLRYKFPSGEEDTILARFTL-----PIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-SSQEK----VLRGHDAPV  141 (933)
T ss_pred             eeccceEEEeeCCCCCccceeeeeec-----cceEEEEecCCcEEEeecCceeEEEEeccc-cchhe----eecccCCce
Confidence            99999999999887765433333333     889999999999999998 89999999986 33333    578999999


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC--------CCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH--------NGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      .++.|+|++. +||+.+-||.|++||+.++.+..++.+-        ...+..++|+|+|..|++.+ .|+.|++|+...
T Consensus       142 l~l~~~p~~~-fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  142 LQLSYDPKGN-FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKG  219 (933)
T ss_pred             eeeeEcCCCC-EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCC
Confidence            9999999999 9999999999999999998877766432        34567899999977777777 799999999987


Q ss_pred             CCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCC
Q psy2305         234 PGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHK  313 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~  313 (334)
                       ......+........+..++|+|.|+|||+++.||.|.|||+++-            +.    ......|.+++|  .|
T Consensus       220 -we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~------------~~----~~~~~~Vc~~aw--~p  280 (933)
T KOG1274|consen  220 -WELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH------------ER----HEFKRAVCCEAW--KP  280 (933)
T ss_pred             -ceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccc------------hh----ccccceeEEEec--CC
Confidence             666777766555555888999999999999999999999999973            11    112357899999  88


Q ss_pred             Cc
Q psy2305         314 FE  315 (334)
Q Consensus       314 ~~  315 (334)
                      +.
T Consensus       281 ~~  282 (933)
T KOG1274|consen  281 NA  282 (933)
T ss_pred             CC
Confidence            87

>KOG0772|consensus

Probab=99.97  E-value=2.4e-29  Score=203.79  Aligned_cols=240  Identities=17%  Similarity=0.239  Sum_probs=183.7

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCee----eEEEcC-ccccccccceeEEEEcCCCCEEEEe
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEI----KATYRP-YNQVDEVTHAYSLAFSLDGNKIYAG  130 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~  130 (334)
                      |+...|.++++       .|.|..|++|+.|.+|++||++....    .+.++. ..|     .|.++.|++.|..|++.
T Consensus       165 hgtk~Vsal~~-------Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h-----~i~sl~ys~Tg~~iLvv  232 (641)
T KOG0772|consen  165 HGTKIVSALAV-------DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH-----QINSLQYSVTGDQILVV  232 (641)
T ss_pred             CCceEEEEeee-------cCCCceeeeccccceEEEEecccccccchhhhccCccccc-----ccceeeecCCCCeEEEE
Confidence            45566766555       88999999999999999999975432    222222 234     89999999999888876


Q ss_pred             e-CCcEEEEEcCCCCCeeeee---------cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc-eEeec-
Q psy2305         131 F-LSEVKIFSTDRPGRECVSR---------NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP-LFFLK-  198 (334)
Q Consensus       131 ~-d~~i~i~d~~~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~-  198 (334)
                      + ....+++|-.  |..+...         ....++|...++|.+|+|..+..|++++.||++++||+.+.+. ...++ 
T Consensus       233 sg~aqakl~DRd--G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~  310 (641)
T KOG0772|consen  233 SGSAQAKLLDRD--GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT  310 (641)
T ss_pred             ecCcceeEEccC--CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence            5 8889999976  4332211         0145789999999999999988999999999999999976543 33332 


Q ss_pred             ----cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc-c-ceeecccccCCceEEEEecCCCceEEeeecCCcEE
Q psy2305         199 ----GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC-I-LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLS  272 (334)
Q Consensus       199 ----~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  272 (334)
                          +..-+++.++|+|+|++|++|+ .||.|.+|+...... + ...-..|.....+.++.||++|++|++-+.|++++
T Consensus       311 k~~~g~Rv~~tsC~~nrdg~~iAagc-~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK  389 (641)
T KOG0772|consen  311 KPAGGKRVPVTSCAWNRDGKLIAAGC-LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK  389 (641)
T ss_pred             ccCCCcccCceeeecCCCcchhhhcc-cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence                2345788999999999999999 899999999864221 1 22334565566899999999999999999999999


Q ss_pred             EEeCCCCCCCCCCCccccccccceecccc--cccceeeeccCCCcccceeeEEeeec
Q psy2305         273 IWNVNTSNLPSSPYEESVQEPLYKFSAHQ--DCTNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       273 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                      +||++..+           +++....+-.  -.-++++|  ||+.    ++|+||..
T Consensus       390 vWDLrq~k-----------kpL~~~tgL~t~~~~tdc~F--SPd~----kli~TGtS  429 (641)
T KOG0772|consen  390 VWDLRQFK-----------KPLNVRTGLPTPFPGTDCCF--SPDD----KLILTGTS  429 (641)
T ss_pred             eeeccccc-----------cchhhhcCCCccCCCCcccc--CCCc----eEEEeccc
Confidence            99999875           5555554433  25688999  9999    99999864

>KOG0639|consensus

Probab=99.97  E-value=1.4e-29  Score=204.67  Aligned_cols=273  Identities=12%  Similarity=0.125  Sum_probs=214.1

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeee-eceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK-EGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      -|.++++|...++++||+. |.|+|||+.......           ....+... ...-|.+       +.+.|||+.|+
T Consensus       421 vVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~-----------PvsqLdcl~rdnyiRS-------ckL~pdgrtLi  481 (705)
T KOG0639|consen  421 VVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS-----------PVSQLDCLNRDNYIRS-------CKLLPDGRTLI  481 (705)
T ss_pred             EEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC-----------ccccccccCcccceee-------eEecCCCceEE
Confidence            4778899998999999975 679999997653320           00111111 1233433       44588999999


Q ss_pred             EeeCCCcEEEEeCCCCeee--EEEcCccccccccceeEEEEcCCCCEEEEe-eCCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIK--ATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      +|+.-.++.|||+......  ..+.....     .++.++.+||.+..+++ +||.|.|||+.. ...+.    .+.+|.
T Consensus       482 vGGeastlsiWDLAapTprikaeltssap-----aCyALa~spDakvcFsccsdGnI~vwDLhn-q~~Vr----qfqGht  551 (705)
T KOG0639|consen  482 VGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYALAISPDAKVCFSCCSDGNIAVWDLHN-QTLVR----QFQGHT  551 (705)
T ss_pred             eccccceeeeeeccCCCcchhhhcCCcch-----hhhhhhcCCccceeeeeccCCcEEEEEccc-ceeee----cccCCC
Confidence            9999999999999765432  22322222     67899999999988866 499999999995 33444    789999


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      ..+.|+.++++|. .|.+|+-|.+|+.||+++++.+.... ....|.++.+.|++.+|++|- +++.+.+.....  ...
T Consensus       552 DGascIdis~dGt-klWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGM-ens~vevlh~sk--p~k  626 (705)
T KOG0639|consen  552 DGASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSK--PEK  626 (705)
T ss_pred             CCceeEEecCCCc-eeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeec-ccCcEEEEecCC--ccc
Confidence            9999999999999 99999999999999999987766544 457899999999999999999 899998887764  323


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL  318 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~  318 (334)
                      ..+  |.+...++++.|.+.|+++++.+.|+.+..|...-+            ..+...+. ...|.++..  +.|.   
T Consensus       627 yql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG------------asiFqskE-~SsVlsCDI--S~dd---  686 (705)
T KOG0639|consen  627 YQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG------------ASIFQSKE-SSSVLSCDI--SFDD---  686 (705)
T ss_pred             eee--cccccEEEEEEecccCceeeecCchhhhhhccCccc------------cceeeccc-cCcceeeee--ccCc---
Confidence            333  445788999999999999999999999999999888            45555543 457999999  9999   


Q ss_pred             eeeEEeeeccee
Q psy2305         319 LVADATCSGQIT  330 (334)
Q Consensus       319 ~~~l~t~~~d~~  330 (334)
                       ++|+|||.|+.
T Consensus       687 -kyIVTGSGdkk  697 (705)
T KOG0639|consen  687 -KYIVTGSGDKK  697 (705)
T ss_pred             -eEEEecCCCcc
Confidence             99999999953

>KOG1407|consensus

Probab=99.97  E-value=7.3e-29  Score=184.73  Aligned_cols=237  Identities=10%  Similarity=0.071  Sum_probs=195.4

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC-CEEEEee-CCc
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSE  134 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~  134 (334)
                      |...+.+++|       +.+|..|++++.|+++.+|+++.++.........|.+   .|-.++|+|.. ..+++++ |.+
T Consensus        19 ~~~~v~Sv~w-------n~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~---svdql~w~~~~~d~~atas~dk~   88 (313)
T KOG1407|consen   19 HVQKVHSVAW-------NCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD---SVDQLCWDPKHPDLFATASGDKT   88 (313)
T ss_pred             hhhcceEEEE-------cccCceeeecccCCceEEEEecchhhhhhhcccCCCc---chhhheeCCCCCcceEEecCCce
Confidence            4577888888       5699999999999999999998886666555444544   78889999865 4666666 999


Q ss_pred             EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCc
Q psy2305         135 VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGI  214 (334)
Q Consensus       135 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  214 (334)
                      |++||++. ++.+..    ... +..=.-+.|+|+|. +++.++.|..|...|.++.+.+...+ ..-.+..++|+-++.
T Consensus        89 ir~wd~r~-~k~~~~----i~~-~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd  160 (313)
T KOG1407|consen   89 IRIWDIRS-GKCTAR----IET-KGENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSND  160 (313)
T ss_pred             EEEEEecc-CcEEEE----eec-cCcceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCC
Confidence            99999997 666553    222 23334678999999 99999999999999999888776655 445677899987777


Q ss_pred             EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccc
Q psy2305         215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL  294 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  294 (334)
                      +++..+ ..|.|.|..... -+++..++.|  .....++.|+|+|+++|+|+.|..+.+||++..            -+.
T Consensus       161 ~Fflt~-GlG~v~ILsyps-Lkpv~si~AH--~snCicI~f~p~GryfA~GsADAlvSLWD~~EL------------iC~  224 (313)
T KOG1407|consen  161 LFFLTN-GLGCVEILSYPS-LKPVQSIKAH--PSNCICIEFDPDGRYFATGSADALVSLWDVDEL------------ICE  224 (313)
T ss_pred             EEEEec-CCceEEEEeccc-cccccccccC--CcceEEEEECCCCceEeeccccceeeccChhHh------------hhh
Confidence            766666 689999999886 7888999988  577889999999999999999999999999986            677


Q ss_pred             ceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         295 YKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       295 ~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ..+..+.-+|..+.|  +.+|    ++||+||+|..|-|
T Consensus       225 R~isRldwpVRTlSF--S~dg----~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  225 RCISRLDWPVRTLSF--SHDG----RMLASASEDHFIDI  257 (313)
T ss_pred             eeeccccCceEEEEe--ccCc----ceeeccCccceEEe
Confidence            788888889999999  9999    99999999988754

>KOG0269|consensus

Probab=99.97  E-value=1.9e-29  Score=213.45  Aligned_cols=282  Identities=17%  Similarity=0.238  Sum_probs=214.0

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeee--ceeEEEEEEecccceecCCCcEEE
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKE--GGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..+|..+++-..++.++.. .+.||.+.......          ++...+....  .-.+.++.|.      .-+.++||
T Consensus        42 ~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~----------~~~~~~k~kqn~~~S~~DVkW~------~~~~NlIA  104 (839)
T KOG0269|consen   42 ANAISVNRDINQIVVAGRS-LLKLYAINPNDFSE----------KCNHRFKTKQNKFYSAADVKWG------QLYSNLIA  104 (839)
T ss_pred             cceEeecCCcceeEEeccc-ceeeEeeCcccCCc----------ceeeecccccceeeehhhcccc------cchhhhhe
Confidence            4567778888888888764 68888887655431          0111111000  1234455564      22678999


Q ss_pred             EeeCCCcEEEEeCCC---CeeeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          82 CSSMYAPIHLWDSVG---GEIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +++..|.|.+||+..   .+.+..|..|..     .++++.|++... +|++|+ ||.|++||++. .+...    .+.+
T Consensus       105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~R-----s~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S~~----t~~~  174 (839)
T KOG0269|consen  105 TCSTNGVISVWDLNKSIRNKLLTVFNEHER-----SANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKSKS----TFRS  174 (839)
T ss_pred             eecCCCcEEEEecCccccchhhhHhhhhcc-----ceeeeeeccCCccEEEecCCCceEEEEeeec-ccccc----cccc
Confidence            999999999999976   444556666554     899999999764 556888 99999999996 33333    5677


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG  235 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~  235 (334)
                      ....|+.|.|+|...+.|+++.+.|.+++||++.. ++...+.+|.++|.++.|+|++.+||+|+ .|+.|+|||+....
T Consensus       175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~  253 (839)
T KOG0269|consen  175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSR  253 (839)
T ss_pred             cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCC
Confidence            88899999999988779999999999999999875 67788899999999999999999999999 79999999998522


Q ss_pred             -ccceeecccccCCceEEEEecCCCce-EEeeec--CCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeecc
Q psy2305         236 -CILHTFPRQVSTNQRVYFDLTSCSNY-LLSGNT--NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKH  311 (334)
Q Consensus       236 -~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  311 (334)
                       .++..+.   ...++.++.|-|...+ |++++.  |-.|+|||++..-           -+...+..|...++.++|  
T Consensus       254 ~~~~~tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-----------IP~~t~~eH~~~vt~i~W--  317 (839)
T KOG0269|consen  254 AKPKHTIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-----------IPYATFLEHTDSVTGIAW--  317 (839)
T ss_pred             ccceeEEe---ecceeeeeeeccCccchhhhhhccccceEEEEeecccc-----------ccceeeeccCccccceec--
Confidence             2222222   3566788999998765 555543  7899999999862           467788999999999999  


Q ss_pred             CC-CcccceeeEEeeecceeeee
Q psy2305         312 HK-FERDLLVADATCSGQITNVK  333 (334)
Q Consensus       312 s~-~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .. |.    ..|.+++.||+|+.
T Consensus       318 ~~~d~----~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  318 DSGDR----INLWSCSKDGTVLQ  336 (839)
T ss_pred             cCCCc----eeeEeecCccHHHH
Confidence            44 44    68999999998864

>KOG0313|consensus

Probab=99.97  E-value=9.7e-29  Score=193.09  Aligned_cols=229  Identities=16%  Similarity=0.265  Sum_probs=188.6

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC---CEEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305          77 TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG---NKIYAGF-LSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        77 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~-d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      ++.|++|++||.+++||. .|+....+.+|..     ++.+++|...+   ..+++++ |.++++|..+.+........ 
T Consensus       115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~-----~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~-  187 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTG-----PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK-  187 (423)
T ss_pred             CceEEEeecCCeeEEEec-CCceEEEEecCCc-----ceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh-
Confidence            679999999999999996 6888888887665     78877775433   3477777 99999999986333322211 


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC-------------------------CCCceEeeccCCCCeEEE
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS-------------------------DGRPLFFLKGHNGGITHL  207 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------------------------~~~~~~~~~~~~~~i~~~  207 (334)
                      ...+|+..|-++...++|. .+++|+.|.+|.+|+..                         +..++.++.+|..+|.++
T Consensus       188 ~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V  266 (423)
T KOG0313|consen  188 VCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV  266 (423)
T ss_pred             HhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence            3469999999999999999 99999999999999931                         123566788999999999


Q ss_pred             EEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCc
Q psy2305         208 EFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYE  287 (334)
Q Consensus       208 ~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  287 (334)
                      .|++ ...+++++ .|.+|+.||+.+ +.....+..   .....+++.+|..++|++|+.|..+++||.+++..-     
T Consensus       267 ~w~d-~~v~yS~S-wDHTIk~WDlet-g~~~~~~~~---~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs-----  335 (423)
T KOG0313|consen  267 VWSD-ATVIYSVS-WDHTIKVWDLET-GGLKSTLTT---NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS-----  335 (423)
T ss_pred             EEcC-CCceEeec-ccceEEEEEeec-ccceeeeec---CcceeEeecccccceeeecCCCCceeecCCCCCCCc-----
Confidence            9998 56889999 899999999998 655555553   556788999999999999999999999999987543     


Q ss_pred             cccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         288 ESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       288 ~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                          -..+.+.+|.+.|.++.|  +|...   .+|++++.|++++.
T Consensus       336 ----~v~~s~~gH~nwVssvkw--sp~~~---~~~~S~S~D~t~kl  372 (423)
T KOG0313|consen  336 ----VVSQSLIGHKNWVSSVKW--SPTNE---FQLVSGSYDNTVKL  372 (423)
T ss_pred             ----eeEEeeecchhhhhheec--CCCCc---eEEEEEecCCeEEE
Confidence                566889999999999999  99873   56999999999874

>KOG1273|consensus

Probab=99.97  E-value=1.8e-28  Score=187.48  Aligned_cols=279  Identities=14%  Similarity=0.112  Sum_probs=210.8

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      -.|+.||+.|.+||+|+.||.|.|||+.+....              ..+ ..|-.+|.+++|       |++|+.|+++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--------------r~l-saH~~pi~sl~W-------S~dgr~Llts   83 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--------------RML-SAHVRPITSLCW-------SRDGRKLLTS   83 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchh--------------hhh-hccccceeEEEe-------cCCCCEeeee
Confidence            468999999999999999999999999998764              233 456789999999       7799999999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE--EeeCCcEEEEEcCCCCCeeeeeccccccc-ccc
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY--AGFLSEVKIFSTDRPGRECVSRNLKPWFR-KNI  160 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~  160 (334)
                      ++|..|.+||+..|.+++.+....      +|+.+.|+|.....+  +--+..-.+-++..+...+..  ..-.+. ...
T Consensus        84 S~D~si~lwDl~~gs~l~rirf~s------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp--~d~d~dln~s  155 (405)
T KOG1273|consen   84 SRDWSIKLWDLLKGSPLKRIRFDS------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP--KDDDGDLNSS  155 (405)
T ss_pred             cCCceeEEEeccCCCceeEEEccC------ccceeeeccccCCeEEEEEecCCcEEEEecCCceeecc--CCCccccccc
Confidence            999999999999999988887643      899999999654443  333555556666531211111  011111 112


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC-CCeEEEEEccCCcEEEeeecCCCeEEEEEccCC-----
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-GGITHLEFSSNGILLFSGARKDCEIICWDLRNP-----  234 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~-----  234 (334)
                      ..+..|.+.|+ ++++|...|.+.+||..+.+++..++-.. ..|..+.++..|++|+.-+ .|+.|+.|+++.-     
T Consensus       156 as~~~fdr~g~-yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~di~~~~r  233 (405)
T KOG1273|consen  156 ASHGVFDRRGK-YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEISDIDDEGR  233 (405)
T ss_pred             cccccccCCCC-EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec-CCceEEEEehhhhcccCc
Confidence            23446899999 99999999999999999999998887655 7899999999999999999 8999999998731     


Q ss_pred             -Cc--cceeecccccCCceEEEEecCCCceEEeeec-CCcEEEEeCCCCCCCCCCCccccccccceecccc-cccceeee
Q psy2305         235 -GC--ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT-NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ-DCTNGVRW  309 (334)
Q Consensus       235 -~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~  309 (334)
                       +.  +.+++..-.....-.++.||.+|.|++.++. ...++||....|            .+++.+.|.+ ....++.|
T Consensus       234 ~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G------------sLVKILhG~kgE~l~DV~w  301 (405)
T KOG1273|consen  234 DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG------------SLVKILHGTKGEELLDVNW  301 (405)
T ss_pred             cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc------------ceeeeecCCchhheeeccc
Confidence             11  1122222222333445789999999988765 457999999999            6777787777 46788999


Q ss_pred             ccCCCcccceeeEEeeecceeeee
Q psy2305         310 KHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       310 ~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                        +|-.    ..+++- ..|+++|
T Consensus       302 --hp~r----p~i~si-~sg~v~i  318 (405)
T KOG1273|consen  302 --HPVR----PIIASI-ASGVVYI  318 (405)
T ss_pred             --ccce----eeeeec-cCCceEE
Confidence              9998    777777 6666654

>KOG4283|consensus

Probab=99.97  E-value=2.4e-28  Score=185.19  Aligned_cols=293  Identities=18%  Similarity=0.189  Sum_probs=215.3

Q ss_pred             ceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .|+++...+ .|+|+++|+.||.|.+||++.....+.-....+..-.....-+..|.-.|.++.|.|.      |.-.+.
T Consensus        45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~------DtGmFt  118 (397)
T KOG4283|consen   45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI------DTGMFT  118 (397)
T ss_pred             ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee------cCceee
Confidence            578888887 6899999999999999999865421100000000000111223345678999999884      566788


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC---CEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG---NKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +++-|.++++||..+.+....|+..+      .|++-+++|-.   .++++|. +-.|++.|+.. +....    .+.+|
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~me~------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH----~LsGH  187 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKMEG------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSH----TLSGH  187 (397)
T ss_pred             cccccceEEEeecccceeeEEeecCc------eeehhhcChhhhcceEEEEecCCCcEEEEeccC-Cccee----eeccc
Confidence            99999999999999998888887644      78888999843   3556776 88999999996 55444    68999


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEee--------------ccCCCCeEEEEEccCCcEEEeeecC
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFL--------------KGHNGGITHLEFSSNGILLFSGARK  222 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~~~  222 (334)
                      ...|.++.|+|.....|++|+.||.|++||++.. .+...+              ..|.+.+.+++|+.++.++++++ .
T Consensus       188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g-t  266 (397)
T KOG4283|consen  188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG-T  266 (397)
T ss_pred             cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc-C
Confidence            9999999999999978899999999999999753 233222              35778899999999999999999 8


Q ss_pred             CCeEEEEEccCCCccceeeccccc---CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc
Q psy2305         223 DCEIICWDLRNPGCILHTFPRQVS---TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA  299 (334)
Q Consensus       223 d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  299 (334)
                      |..+++|+..+....+..+....+   ......+. +-+...++---.++.+.++++-++            ..+..+..
T Consensus       267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sg------------s~ir~l~~  333 (397)
T KOG4283|consen  267 DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEG------------SFVRRLST  333 (397)
T ss_pred             ccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCc------------eEEEeeec
Confidence            999999999874333333321111   11111122 233344444445688999999998            67888888


Q ss_pred             cccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         300 HQDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       300 ~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      |-..|.+.+|  .|+-    +.+.++..|+.++
T Consensus       334 h~k~i~c~~~--~~~f----q~~~tg~~d~ni~  360 (397)
T KOG4283|consen  334 HLKRINCAAY--RPDF----EQCFTGDMNGNIY  360 (397)
T ss_pred             ccceeeEEee--cCch----hhhhccccCCccc
Confidence            9778999999  8988    8899999998875

>KOG0294|consensus

Probab=99.97  E-value=7.4e-28  Score=183.98  Aligned_cols=271  Identities=15%  Similarity=0.149  Sum_probs=210.2

Q ss_pred             EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEe
Q psy2305          15 CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWD   93 (334)
Q Consensus        15 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd   93 (334)
                      .+++|++...|.=+++......    ......+.+.+.+. ..|.+.|++++-         ++.++++|+.|-+|+|||
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~----~~~s~~~~l~~lF~~~aH~~sitavAV---------s~~~~aSGssDetI~IYD   69 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKG----CTDSVKPTLKPLFAFSAHAGSITALAV---------SGPYVASGSSDETIHIYD   69 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccc----cccccceeeeccccccccccceeEEEe---------cceeEeccCCCCcEEEEe
Confidence            4678888888877776543310    11112222222322 236688888877         899999999999999999


Q ss_pred             CCCCeeeEEEcCccccccccceeEEEEcCCCC--EEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCC
Q psy2305          94 SVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN--KIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVH  170 (334)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  170 (334)
                      +.+...+..+-.|..     .|+++.|.+.-.  .|++|+ ||.|.+|+... -..+.    .+.+|.+.|+.++.+|.+
T Consensus        70 m~k~~qlg~ll~Hag-----sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~----slK~H~~~Vt~lsiHPS~  139 (362)
T KOG0294|consen   70 MRKRKQLGILLSHAG-----SITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLK----SLKAHKGQVTDLSIHPSG  139 (362)
T ss_pred             ccchhhhcceecccc-----ceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEee----eecccccccceeEecCCC
Confidence            998888877776544     899999999864  788877 99999999985 33333    689999999999999999


Q ss_pred             CcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCce
Q psy2305         171 PDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR  250 (334)
Q Consensus       171 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  250 (334)
                      + +.++.+.|+.++.||+-.|+.-..+.- ....+.+.|+|.|.+++.+.  ...|-+|.+.+ ......+..   ...+
T Consensus       140 K-LALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~-A~v~~~i~~---~~r~  211 (362)
T KOG0294|consen  140 K-LALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSG--RNKIDIYQLDN-ASVFREIEN---PKRI  211 (362)
T ss_pred             c-eEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEe--ccEEEEEeccc-HhHhhhhhc---cccc
Confidence            9 888999999999999988876555542 22334599999999998887  56789999986 554444443   3445


Q ss_pred             EEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeeccee
Q psy2305         251 VYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQIT  330 (334)
Q Consensus       251 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~  330 (334)
                      .++.| -++.+|++|+.|+.|.+||..+.            .+...+.+|...|.++.+-..|++    .+|+|+|.||.
T Consensus       212 l~~~~-l~~~~L~vG~d~~~i~~~D~ds~------------~~~~~~~AH~~RVK~i~~~~~~~~----~~lvTaSSDG~  274 (362)
T KOG0294|consen  212 LCATF-LDGSELLVGGDNEWISLKDTDSD------------TPLTEFLAHENRVKDIASYTNPEH----EYLVTASSDGF  274 (362)
T ss_pred             eeeee-cCCceEEEecCCceEEEeccCCC------------ccceeeecchhheeeeEEEecCCc----eEEEEeccCce
Confidence            55555 36788999999999999999986            788999999999999996456888    99999999999


Q ss_pred             eee
Q psy2305         331 NVK  333 (334)
Q Consensus       331 i~~  333 (334)
                      |++
T Consensus       275 I~v  277 (362)
T KOG0294|consen  275 IKV  277 (362)
T ss_pred             EEE
Confidence            986

>KOG0274|consensus

Probab=99.97  E-value=2e-28  Score=211.01  Aligned_cols=234  Identities=15%  Similarity=0.217  Sum_probs=199.4

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|..-+.+|++|+.|.++++||..+++..              ..+. .|...|.++..         ...+++
T Consensus       250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~--------------~~l~-gh~stv~~~~~---------~~~~~~  305 (537)
T KOG0274|consen  250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT--------------HSLQ-GHTSSVRCLTI---------DPFLLV  305 (537)
T ss_pred             CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE--------------EEec-CCCceEEEEEc---------cCceEe
Confidence            46899999887889999999999999999999987              4555 46677877765         556788


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +|+.|.+|++|++.++..+..+.+|..     +|+++..+  +.++++|+ |++|++||+.+ ++.+.    .+.+|...
T Consensus       306 sgs~D~tVkVW~v~n~~~l~l~~~h~~-----~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-~~cl~----sl~gH~~~  373 (537)
T KOG0274|consen  306 SGSRDNTVKVWDVTNGACLNLLRGHTG-----PVNCVQLD--EPLLVSGSYDGTVKVWDPRT-GKCLK----SLSGHTGR  373 (537)
T ss_pred             eccCCceEEEEeccCcceEEEeccccc-----cEEEEEec--CCEEEEEecCceEEEEEhhh-ceeee----eecCCcce
Confidence            899999999999999999999987544     99999998  77888887 99999999996 66666    68999999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccce
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                      |.++.+.+. . .+++|+.|+.|++||+++. +++..+.+|..-+..+.+  .+++|++++ .|++|++||... +++++
T Consensus       374 V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~-aD~~Ik~WD~~~-~~~~~  447 (537)
T KOG0274|consen  374 VYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS-ADGTIKLWDAEE-GECLR  447 (537)
T ss_pred             EEEEEecCc-c-eEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc-ccccEEEeeccc-Cceee
Confidence            999988876 4 8999999999999999999 999999999988866655  577999999 999999999998 78888


Q ss_pred             eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         240 TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      .+... +...+..+++.  ...+++++.||.+++||++++.
T Consensus       448 ~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  448 TLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             eeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence            88874 34556555543  5678888999999999999984

>KOG0973|consensus

Probab=99.97  E-value=1.1e-28  Score=216.25  Aligned_cols=261  Identities=13%  Similarity=0.117  Sum_probs=203.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeee----eCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSV----WRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      .+|.|+.|+|||++||+|+.|+.|.||..........+    .....+.+.....+++ |...|.+++|       +|++
T Consensus        70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~W-------sp~~  141 (942)
T KOG0973|consen   70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNW-------SPDD  141 (942)
T ss_pred             CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceecc-------CCCc
Confidence            46999999999999999999999999998841110001    0112233444556665 6688999999       7799


Q ss_pred             cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeee--cccc
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSR--NLKP  154 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~--~~~~  154 (334)
                      .+|++++.|++|.+|+..+.+.+..++.|..     .|..+.|.|-|++|++-+ |++|++|++.. -.....+  +...
T Consensus       142 ~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s-----~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~k~It~pf~~  215 (942)
T KOG0973|consen  142 SLLVSVSLDNSVIIWNAKTFELLKVLRGHQS-----LVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIEKSITKPFEE  215 (942)
T ss_pred             cEEEEecccceEEEEccccceeeeeeecccc-----cccceEECCccCeeeeecCCceEEEEEccc-ceeeEeeccchhh
Confidence            9999999999999999999999999998776     899999999999999887 99999999764 2222211  1011


Q ss_pred             cccccceEEEEEcCCCCcEEEEeec----CCeEEEEECCCCCceEeeccCCCCeEEEEEccC-----Cc-----------
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTY----SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN-----GI-----------  214 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~-----------  214 (334)
                      ..-...+..+.|+|||. +|++...    -.++.|.+-.+.+.-..|-||.+++.+++|+|.     .+           
T Consensus       216 ~~~~T~f~RlSWSPDG~-~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y  294 (942)
T KOG0973|consen  216 SPLTTFFLRLSWSPDGH-HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYY  294 (942)
T ss_pred             CCCcceeeecccCCCcC-eecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcce
Confidence            12244678999999999 8887642    246889998888888899999999999999872     11           


Q ss_pred             -EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         215 -LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       215 -~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                       .+++|+ .|++|.||.... .+++..+. +.....+..++|+|||..|++++.||+|.++.++..+
T Consensus       295 ~i~AvgS-qDrSlSVW~T~~-~RPl~vi~-~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  295 CIAAVGS-QDRSLSVWNTAL-PRPLFVIH-NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             EEEEEec-CCccEEEEecCC-CCchhhhh-hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence             578888 899999999976 55555443 3346788999999999999999999999999988653

>KOG0308|consensus

Probab=99.97  E-value=1.4e-29  Score=210.44  Aligned_cols=228  Identities=16%  Similarity=0.250  Sum_probs=193.0

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCee------eEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCee
Q psy2305          75 GFTSYFLCSSMYAPIHLWDSVGGEI------KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGREC  147 (334)
Q Consensus        75 ~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~  147 (334)
                      |++++|++|++||.|++|++.....      +..++.  |.+   .|..+....+++.|++++ |-+|++|+....+..+
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~--HsD---WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c  109 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH--HSD---WVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC  109 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhh--hHh---HHhhHHhhcCCCceEEecCCceEEEeecccCcchh
Confidence            5778899999999999998754322      344444  333   889999999999899887 9999999998744233


Q ss_pred             eeecccccccccceEEEEE-cCCCCcEEEEeecCCeEEEEECCCCC--ceE--------eec-cCCCCeEEEEEccCCcE
Q psy2305         148 VSRNLKPWFRKNIVSAIAI-NPVHPDICALGTYSKIIGLFSDSDGR--PLF--------FLK-GHNGGITHLEFSSNGIL  215 (334)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~--------~~~-~~~~~i~~~~~~~~~~~  215 (334)
                      ..   .+..|...|.|+++ .++.. ++|+|+-|+.|++||++++.  .+.        .+. ++..+|++++.++.|..
T Consensus       110 ~s---tir~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~  185 (735)
T KOG0308|consen  110 MS---TIRTHKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI  185 (735)
T ss_pred             Hh---hhhcccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence            33   67889999999999 67777 99999999999999998762  222        233 78889999999999999


Q ss_pred             EEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccc
Q psy2305         216 LFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY  295 (334)
Q Consensus       216 l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  295 (334)
                      |++|+ .++.+++||.++ .+.+..+.+|  ...+..+..++||..+++++.||+|++||+...            +++.
T Consensus       186 ivsGg-tek~lr~wDprt-~~kimkLrGH--TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ------------rCl~  249 (735)
T KOG0308|consen  186 IVSGG-TEKDLRLWDPRT-CKKIMKLRGH--TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ------------RCLA  249 (735)
T ss_pred             EEecC-cccceEEecccc-ccceeeeecc--ccceEEEEEcCCCCeEeecCCCceEEeeecccc------------ceee
Confidence            99999 899999999999 7777888887  667777888999999999999999999999987            7889


Q ss_pred             eecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         296 KFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       296 ~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ++..|...|+++.-  +|+-    ..+.+|+.||.|+.
T Consensus       250 T~~vH~e~VWaL~~--~~sf----~~vYsG~rd~~i~~  281 (735)
T KOG0308|consen  250 TYIVHKEGVWALQS--SPSF----THVYSGGRDGNIYR  281 (735)
T ss_pred             eEEeccCceEEEee--CCCc----ceEEecCCCCcEEe
Confidence            99999999999999  9998    99999999999863

>KOG2048|consensus

Probab=99.97  E-value=4e-27  Score=196.69  Aligned_cols=280  Identities=13%  Similarity=0.148  Sum_probs=227.6

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      +|.++||+.+.+.||.+-.+|.|.||++...-..             ...+.++....|.+++|+        ++..|++
T Consensus        27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~-------------~~vi~g~~drsIE~L~W~--------e~~RLFS   85 (691)
T KOG2048|consen   27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL-------------EPVIHGPEDRSIESLAWA--------EGGRLFS   85 (691)
T ss_pred             ceEEEEEeccCCceeeeccCCcEEEEccCCCcee-------------eEEEecCCCCceeeEEEc--------cCCeEEe
Confidence            5899999999999999999999999999886553             267888888999999994        4566888


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      .+-+|.|.-||+.+++.+..+.....     .|++++.+|.+..++.|. ||.+..++... +.....+  .+...++++
T Consensus        86 ~g~sg~i~EwDl~~lk~~~~~d~~gg-----~IWsiai~p~~~~l~IgcddGvl~~~s~~p-~~I~~~r--~l~rq~sRv  157 (691)
T KOG2048|consen   86 SGLSGSITEWDLHTLKQKYNIDSNGG-----AIWSIAINPENTILAIGCDDGVLYDFSIGP-DKITYKR--SLMRQKSRV  157 (691)
T ss_pred             ecCCceEEEEecccCceeEEecCCCc-----ceeEEEeCCccceEEeecCCceEEEEecCC-ceEEEEe--ecccccceE
Confidence            88999999999999999988887665     999999999999999886 89777777664 3332222  355667899


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-------c-cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-------K-GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      .++.|+|++. .++.|+.||.|++||..++..++..       . +...-|.++.|-.++ .|++|. ..|+|.+||...
T Consensus       158 Lslsw~~~~~-~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD-S~G~V~FWd~~~  234 (691)
T KOG2048|consen  158 LSLSWNPTGT-KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD-SAGTVTFWDSIF  234 (691)
T ss_pred             EEEEecCCcc-EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec-CCceEEEEcccC
Confidence            9999999998 8999999999999999988766622       1 123346778887665 678888 899999999998


Q ss_pred             CCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCC
Q psy2305         234 PGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHK  313 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~  313 (334)
                       +..++.+..|  ...+.+++..+++.++++++.|+.|..|...+....        |........|...|.+++.  .+
T Consensus       235 -gTLiqS~~~h--~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~--------wv~~~~r~~h~hdvrs~av--~~  301 (691)
T KOG2048|consen  235 -GTLIQSHSCH--DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE--------WVINSRRDLHAHDVRSMAV--IE  301 (691)
T ss_pred             -cchhhhhhhh--hcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc--------eeeeccccCCcccceeeee--ec
Confidence             8888887776  667888999999999999999999999988876321        2334445667788999998  44


Q ss_pred             CcccceeeEEeeecceeeee
Q psy2305         314 FERDLLVADATCSGQITNVK  333 (334)
Q Consensus       314 ~~~~~~~~l~t~~~d~~i~~  333 (334)
                            ..|++||.|.++++
T Consensus       302 ------~~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  302 ------NALISGGRDFTLAI  315 (691)
T ss_pred             ------ceEEecceeeEEEE
Confidence                  46999999999876

>KOG0643|consensus

Probab=99.97  E-value=1.2e-27  Score=178.91  Aligned_cols=232  Identities=13%  Similarity=0.212  Sum_probs=196.8

Q ss_pred             eeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC
Q psy2305          55 IKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS  133 (334)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~  133 (334)
                      .+|..+++.+.|       +.+|.+|++++.|....+|-..+|+.+-++.+|..     .|+++..+.+.++|++|+ |.
T Consensus         7 ~GHERplTqiKy-------N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtG-----avW~~Did~~s~~liTGSAD~   74 (327)
T KOG0643|consen    7 QGHERPLTQIKY-------NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-----AVWCCDIDWDSKHLITGSADQ   74 (327)
T ss_pred             ccCccccceEEe-------cCCCcEEEEecCCCCceEEEecCCceeeeecCCCc-----eEEEEEecCCcceeeeccccc
Confidence            346788988888       66999999999999999999889999999998766     999999999999999998 99


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeec-----CCeEEEEECC-------CCCceEeeccCC
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY-----SKIIGLFSDS-------DGRPLFFLKGHN  201 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~  201 (334)
                      ++++||+.+ ++.+..     .....+|..+.|+++|+ +++...+     .+.|.++|++       ..++...+..+.
T Consensus        75 t~kLWDv~t-Gk~la~-----~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~  147 (327)
T KOG0643|consen   75 TAKLWDVET-GKQLAT-----WKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD  147 (327)
T ss_pred             eeEEEEcCC-CcEEEE-----eecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc
Confidence            999999998 777653     34467899999999998 6665543     3679999997       456678888888


Q ss_pred             CCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCC
Q psy2305         202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL  281 (334)
Q Consensus       202 ~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  281 (334)
                      ..++.+-|.|-+++|++|. +||.|.+||+++..+.+.....|  ...+..++++++..++++++.|.+-++||+.+.  
T Consensus       148 skit~a~Wg~l~~~ii~Gh-e~G~is~~da~~g~~~v~s~~~h--~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl--  222 (327)
T KOG0643|consen  148 SKITSALWGPLGETIIAGH-EDGSISIYDARTGKELVDSDEEH--SSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL--  222 (327)
T ss_pred             cceeeeeecccCCEEEEec-CCCcEEEEEcccCceeeechhhh--ccccccccccCCcceEEecccCccceeeeccce--
Confidence            9999999999999999999 99999999999844444444444  557889999999999999999999999999997  


Q ss_pred             CCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeec
Q psy2305         282 PSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                                +.++++.. ..+|++.++  +|..    ..++.++.
T Consensus       223 ----------~v~Kty~t-e~PvN~aai--sP~~----d~VilgGG  251 (327)
T KOG0643|consen  223 ----------EVLKTYTT-ERPVNTAAI--SPLL----DHVILGGG  251 (327)
T ss_pred             ----------eeEEEeee-cccccceec--cccc----ceEEecCC
Confidence                      66666664 568999999  9988    77666654

>KOG0288|consensus

Probab=99.97  E-value=6.9e-29  Score=195.86  Aligned_cols=235  Identities=15%  Similarity=0.175  Sum_probs=193.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .+|+++.|.++++++++++.|+.+++|++...+..              .++.+ |.+.|+++.|..       ....++
T Consensus       220 g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~--------------~TLsG-HtdkVt~ak~~~-------~~~~vV  277 (459)
T KOG0288|consen  220 GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR--------------HTLSG-HTDKVTAAKFKL-------SHSRVV  277 (459)
T ss_pred             CCcceeeecCCCceEEeecCCCceeeeeccchhhh--------------hhhcc-cccceeeehhhc-------ccccee
Confidence            46899999999999999999999999999998876              57776 778999988842       333499


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +|+.|.+|++||+....+.+++-...      .+..+..+  ...+++|. |+.|++||.+. .....    ....+ +.
T Consensus       278 sgs~DRtiK~WDl~k~~C~kt~l~~S------~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs-~~~~~----sv~~g-g~  343 (459)
T KOG0288|consen  278 SGSADRTIKLWDLQKAYCSKTVLPGS------QCNDIVCS--ISDVISGHFDKKVRFWDIRS-ADKTR----SVPLG-GR  343 (459)
T ss_pred             eccccchhhhhhhhhhheeccccccc------cccceEec--ceeeeecccccceEEEeccC-Cceee----EeecC-cc
Confidence            99999999999999988877665433      34555555  44566776 99999999996 44444    23333 48


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC----CCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH----NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      |+++..++++. .+++++.|.++.+.|+++.+....+...    ....+.+.|||++.|+++|+ .||.|+||++.+ ++
T Consensus       344 vtSl~ls~~g~-~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~t-gK  420 (459)
T KOG0288|consen  344 VTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVFT-GK  420 (459)
T ss_pred             eeeEeeccCCe-EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCCcEEEEEccC-ce
Confidence            99999999999 8888899999999999998887777432    23478899999999999999 999999999998 78


Q ss_pred             cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN  275 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  275 (334)
                      +...+........++++.|+|.|..|++++.++.+.+|.
T Consensus       421 lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  421 LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             EEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            777777665555799999999999999999999999993

>KOG0640|consensus

Probab=99.97  E-value=1.3e-28  Score=187.91  Aligned_cols=212  Identities=20%  Similarity=0.268  Sum_probs=173.0

Q ss_pred             eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCC------------C------eeeEEEcCccccccc
Q psy2305          51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVG------------G------EIKATYRPYNQVDEV  112 (334)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~------------~------~~~~~~~~~~~~~~~  112 (334)
                      ......|..++.+.+|       ++||.++++|+.|-.|+|.|++.            +      -.++++-.  |.+  
T Consensus       105 t~ylt~HK~~cR~aaf-------s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD--H~d--  173 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAF-------SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD--HVD--  173 (430)
T ss_pred             eEEEeecccceeeeee-------CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh--ccC--
Confidence            3444456677766555       88999999999999999999862            1      12233332  222  


Q ss_pred             cceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC
Q psy2305         113 THAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG  191 (334)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  191 (334)
                       .|+++.|+|....|++|+ |++|++||...+....   .........+|.++.|+|.|. +++.|.+...+++||+++.
T Consensus       174 -evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr---A~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~  248 (430)
T KOG0640|consen  174 -EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR---AFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTY  248 (430)
T ss_pred             -cccceeecchhheEEeccCCCeEEEEecccHHHHH---HHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccce
Confidence             899999999999999998 9999999998522111   112334457899999999999 9999999999999999988


Q ss_pred             CceEee---ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC
Q psy2305         192 RPLFFL---KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN  268 (334)
Q Consensus       192 ~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  268 (334)
                      ++...-   ..|.+.|+++.+++.|++.++++ .||.|++||--+ .+++.++.....+..+.+..|..+|+|+++.+.|
T Consensus       249 QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-kDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D  326 (430)
T KOG0640|consen  249 QCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-KDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD  326 (430)
T ss_pred             eEeeecCcccccccceeEEEecCCccEEEEec-cCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence            775543   46889999999999999999999 999999999887 7888888876667788999999999999999999


Q ss_pred             CcEEEEeCCCCC
Q psy2305         269 GDLSIWNVNTSN  280 (334)
Q Consensus       269 g~i~iwd~~~~~  280 (334)
                      ..+++|++.+++
T Consensus       327 S~vkLWEi~t~R  338 (430)
T KOG0640|consen  327 STVKLWEISTGR  338 (430)
T ss_pred             ceeeeeeecCCc
Confidence            999999999983

>KOG0301|consensus

Probab=99.96  E-value=4.4e-28  Score=202.85  Aligned_cols=266  Identities=17%  Similarity=0.193  Sum_probs=214.1

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEE-EEEecccceecCCCcEEEE
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYD-YVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~s~~~~~l~~   82 (334)
                      |+.+++.+. ..++++++||++++|+-...+...            ...+.+++ +-|.. ++|.+      .++-.+++
T Consensus        17 Vr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~------------~~~~~~~~-g~i~~~i~y~e------~~~~~l~~   76 (745)
T KOG0301|consen   17 VRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLE------------THAFEGPK-GFIANSICYAE------SDKGRLVV   76 (745)
T ss_pred             hheeEecCC-eEEeecCCCCceeeeeccCccccc------------ceecccCc-ceeeccceecc------ccCcceEe
Confidence            556666654 478999999999999987776541            12233333 33333 55522      25556999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      |+.|.+|.+|.+........+.+|..     .|.++....++. |++|+ |.++++|-...   ...    .+.+|...|
T Consensus        77 g~~D~~i~v~~~~~~~P~~~LkgH~s-----nVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~----~l~gH~asV  143 (745)
T KOG0301|consen   77 GGMDTTIIVFKLSQAEPLYTLKGHKS-----NVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVY----SLQGHTASV  143 (745)
T ss_pred             ecccceEEEEecCCCCchhhhhcccc-----ceeeeecCCcCc-eEecccccceEEecchh---hhc----ccCCcchhe
Confidence            99999999999999999999998776     899999888887 88888 99999998763   223    578999999


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceee
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                      .+++.-|++  .++||+.|.+|++|.-  ++.+++|.+|...|+++++-|++. +++++ .||.|++|++.  +..+.++
T Consensus       144 WAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScs-NDg~Ir~w~~~--ge~l~~~  215 (745)
T KOG0301|consen  144 WAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS-NDGSIRLWDLD--GEVLLEM  215 (745)
T ss_pred             eeeeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeec-CCceEEEEecc--Cceeeee
Confidence            999999988  5889999999999985  788999999999999999998764 66778 79999999995  6777777


Q ss_pred             cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceee
Q psy2305         242 PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVA  321 (334)
Q Consensus       242 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~  321 (334)
                      .+|  ...+.+++..+++..++++++|++++||+...              +.+.+.-..-.|+++.+  -++|     -
T Consensus       216 ~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e--------------~~q~I~lPttsiWsa~~--L~Ng-----D  272 (745)
T KOG0301|consen  216 HGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKDE--------------CVQVITLPTTSIWSAKV--LLNG-----D  272 (745)
T ss_pred             ecc--ceEEEEEEecCCCCeEEEecCCceEEEeecCc--------------eEEEEecCccceEEEEE--eeCC-----C
Confidence            776  67788888778889999999999999999773              34445444557999998  8887     4


Q ss_pred             EEeeecceeeee
Q psy2305         322 DATCSGQITNVK  333 (334)
Q Consensus       322 l~t~~~d~~i~~  333 (334)
                      |++|+.||.|+|
T Consensus       273 Ivvg~SDG~VrV  284 (745)
T KOG0301|consen  273 IVVGGSDGRVRV  284 (745)
T ss_pred             EEEeccCceEEE
Confidence            899999999987

>KOG0264|consensus

Probab=99.96  E-value=6.9e-28  Score=192.47  Aligned_cols=254  Identities=19%  Similarity=0.257  Sum_probs=188.8

Q ss_pred             CceeEEEEcCCC-cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDG-TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +.|+.+.+-|.. ..+|+.+..+.|.|||..+.........  ...  +...+.+|+. .=++++|++.      ..-.|
T Consensus       125 gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--~~~--Pdl~L~gH~~-eg~glsWn~~------~~g~L  193 (422)
T KOG0264|consen  125 GEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--ECR--PDLRLKGHEK-EGYGLSWNRQ------QEGTL  193 (422)
T ss_pred             ccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--cCC--CceEEEeecc-cccccccccc------cceeE
Confidence            346777788855 4677888899999999886654321111  111  2235666554 4577888653      34468


Q ss_pred             EEeeCCCcEEEEeCCCCee-------eEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCC-CCeeeee
Q psy2305          81 LCSSMYAPIHLWDSVGGEI-------KATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRP-GRECVSR  150 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~-~~~~~~~  150 (334)
                      ++++.|+.|++||+.....       ...+..|..     .|..++|++-...|+ +.+ |+.+.|||+++. .+...  
T Consensus       194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~-----~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~--  266 (422)
T KOG0264|consen  194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHED-----VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH--  266 (422)
T ss_pred             eeccCCCcEEEEeccccccCCccccceEEeecCCc-----ceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc--
Confidence            9999999999999864322       233444333     899999999765555 444 999999999962 22222  


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCC-cEEEeeecCCCeEEE
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNG-ILLFSGARKDCEIIC  228 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~i  228 (334)
                        ...+|...+.|++|+|-+..+||+|+.|++|.+||+|+. +++.++.+|...|..+.|+|+. ..|++++ .|+.+.+
T Consensus       267 --~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~v  343 (422)
T KOG0264|consen  267 --SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNV  343 (422)
T ss_pred             --cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEE
Confidence              568899999999999998889999999999999999985 6788999999999999999965 4677777 8999999


Q ss_pred             EEccCCCcc-------------ceeecccccCCceEEEEecCCCce-EEeeecCCcEEEEeCCC
Q psy2305         229 WDLRNPGCI-------------LHTFPRQVSTNQRVYFDLTSCSNY-LLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       229 wd~~~~~~~-------------~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~dg~i~iwd~~~  278 (334)
                      ||+..-+..             +....+|  ...|..+.|+|+..+ +++.+.|+.++||....
T Consensus       344 WDls~ig~eq~~eda~dgppEllF~HgGH--~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  344 WDLSRIGEEQSPEDAEDGPPELLFIHGGH--TAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             EeccccccccChhhhccCCcceeEEecCc--ccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            999764332             2233334  667888999998765 56788999999999874

>KOG0294|consensus

Probab=99.96  E-value=1.9e-27  Score=181.75  Aligned_cols=238  Identities=16%  Similarity=0.219  Sum_probs=187.2

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      +|++++.+  +.++|+|+.|-+|+|||+......              ..+. .|.+.|+++.|++.     .....|++
T Consensus        45 sitavAVs--~~~~aSGssDetI~IYDm~k~~ql--------------g~ll-~HagsitaL~F~~~-----~S~shLlS  102 (362)
T KOG0294|consen   45 SITALAVS--GPYVASGSSDETIHIYDMRKRKQL--------------GILL-SHAGSITALKFYPP-----LSKSHLLS  102 (362)
T ss_pred             ceeEEEec--ceeEeccCCCCcEEEEeccchhhh--------------ccee-ccccceEEEEecCC-----cchhheee
Confidence            57777774  889999999999999999988765              2333 46789999999652     12237999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-eCCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      |+.||.|.+|+....+++..++.|.+     .|+.++.+|.+++.++. .|+.+++||+-+ ++.....++     ....
T Consensus       103 ~sdDG~i~iw~~~~W~~~~slK~H~~-----~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~-Gr~a~v~~L-----~~~a  171 (362)
T KOG0294|consen  103 GSDDGHIIIWRVGSWELLKSLKAHKG-----QVTDLSIHPSGKLALSVGGDQVLRTWNLVR-GRVAFVLNL-----KNKA  171 (362)
T ss_pred             ecCCCcEEEEEcCCeEEeeeeccccc-----ccceeEecCCCceEEEEcCCceeeeehhhc-Cccceeecc-----CCcc
Confidence            99999999999999999999999877     89999999999987755 499999999987 554443211     2233


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceee
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                      +.+.|+|.|. +++.+.. ..|-+|.+.+......+.. ...+.++.|. ++..|++|. .|+.|++||... ..+...+
T Consensus       172 t~v~w~~~Gd-~F~v~~~-~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~-d~~~i~~~D~ds-~~~~~~~  245 (362)
T KOG0294|consen  172 TLVSWSPQGD-HFVVSGR-NKIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGG-DNEWISLKDTDS-DTPLTEF  245 (362)
T ss_pred             eeeEEcCCCC-EEEEEec-cEEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEec-CCceEEEeccCC-Cccceee
Confidence            4499999999 7777664 5789999988776666553 3557777775 566888898 899999999998 7888888


Q ss_pred             cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         242 PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       242 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .+|.........--.|++.+|++++.||.|++||++..
T Consensus       246 ~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  246 LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            88854443333334678899999999999999999875

>KOG0278|consensus

Probab=99.96  E-value=1.3e-28  Score=182.48  Aligned_cols=196  Identities=24%  Similarity=0.274  Sum_probs=168.5

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|.+++|+.|.++|++|+.+..+||||++..+..              +.-...|.+.|..+-|+-       ..+.|++
T Consensus       102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap--------------p~E~~ghtg~Ir~v~wc~-------eD~~iLS  160 (334)
T KOG0278|consen  102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP--------------PKEISGHTGGIRTVLWCH-------EDKCILS  160 (334)
T ss_pred             eeeeEEecccchhhhccchHHHhhhhhccCCCCC--------------chhhcCCCCcceeEEEec-------cCceEEe
Confidence            4889999999999999999999999999877643              222334668898888853       5667888


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      ++.|++|++||..++..++.+....      +|+++.++++|++|.++..+.|.+||... -..++.     ..-...|.
T Consensus       161 Sadd~tVRLWD~rTgt~v~sL~~~s------~VtSlEvs~dG~ilTia~gssV~Fwdaks-f~~lKs-----~k~P~nV~  228 (334)
T KOG0278|consen  161 SADDKTVRLWDHRTGTEVQSLEFNS------PVTSLEVSQDGRILTIAYGSSVKFWDAKS-FGLLKS-----YKMPCNVE  228 (334)
T ss_pred             eccCCceEEEEeccCcEEEEEecCC------CCcceeeccCCCEEEEecCceeEEecccc-ccceee-----ccCccccc
Confidence            8999999999999999999887643      79999999999999999999999999986 333332     33355688


Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         163 AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      +...+|+.. .++.|++|..++.||..+++.+..+ ++|.++|.|+.|+|+|...++|+ +||+|++|-...
T Consensus       229 SASL~P~k~-~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS-EDGTirlWQt~~  298 (334)
T KOG0278|consen  229 SASLHPKKE-FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS-EDGTIRLWQTTP  298 (334)
T ss_pred             cccccCCCc-eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC-CCceEEEEEecC
Confidence            999999997 9999999999999999999998886 89999999999999999999999 999999999875

>KOG0300|consensus

Probab=99.96  E-value=5.1e-28  Score=185.38  Aligned_cols=279  Identities=14%  Similarity=0.175  Sum_probs=222.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      |.|+.++-......+.+++.|.+.+||.++++...              ..+. +|.+.|+++.|       ++.+.+++
T Consensus       149 DGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL--------------~~Y~-GH~GSVNsikf-------h~s~~L~l  206 (481)
T KOG0300|consen  149 DGIWHVAADSTQPICGTASADHTARIWSLESGACL--------------ATYT-GHTGSVNSIKF-------HNSGLLLL  206 (481)
T ss_pred             cceeeehhhcCCcceeecccccceeEEeeccccce--------------eeec-ccccceeeEEe-------ccccceEE
Confidence            56777777777778999999999999999999976              3444 46688998888       66899999


Q ss_pred             EeeCCCcEEEEeC------CC--------Ce--------------------------eeEEEcCccccccccceeEEEEc
Q psy2305          82 CSSMYAPIHLWDS------VG--------GE--------------------------IKATYRPYNQVDEVTHAYSLAFS  121 (334)
Q Consensus        82 ~~~~d~~i~iwd~------~~--------~~--------------------------~~~~~~~~~~~~~~~~v~~~~~~  121 (334)
                      +++.|++..||..      ..        ++                          .+..+.+|     .+.|.+..|.
T Consensus       207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH-----~~vV~a~dWL  281 (481)
T KOG0300|consen  207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH-----RAVVSACDWL  281 (481)
T ss_pred             EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc-----ccceEehhhh
Confidence            9999999999952      11        00                          01112221     2267788888


Q ss_pred             CCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeecc
Q psy2305         122 LDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKG  199 (334)
Q Consensus       122 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~  199 (334)
                      ..|+.+++++ |.+..+||+++ +..+.    .+.+|....+.++-+|..+ ++++.+.|.+.++||.+.. ..+..|++
T Consensus       282 ~gg~Q~vTaSWDRTAnlwDVEt-ge~v~----~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQG  355 (481)
T KOG0300|consen  282 AGGQQMVTASWDRTANLWDVET-GEVVN----ILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQG  355 (481)
T ss_pred             cCcceeeeeeccccceeeeecc-Cceec----cccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecc
Confidence            8999999998 99999999997 66666    6899999999999999999 9999999999999999854 45778899


Q ss_pred             CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         200 HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       200 ~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      |...|+++.|..+. .+++|+ .|.+|++||+++...++.++..   ...+..++.+..+..++.--.+..|++||+...
T Consensus       356 HtdtVTS~vF~~dd-~vVSgS-DDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  356 HTDTVTSVVFNTDD-RVVSGS-DDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             cccceeEEEEecCC-ceeecC-CCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence            99999999998765 578999 8999999999987777777763   455667788888889999888999999999986


Q ss_pred             CCCCCCCcccccccc-ceecccccccceeeeccCCCcccceeeEEeeecceee
Q psy2305         280 NLPSSPYEESVQEPL-YKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       280 ~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i  331 (334)
                      .+.         +.. ..-.+|..-|.+++|  ..+-+.  .-|++||-|..+
T Consensus       431 Rla---------RlPrtsRqgHrRMV~c~AW--~eehp~--cnLftcGFDR~v  470 (481)
T KOG0300|consen  431 RLA---------RLPRTSRQGHRRMVTCCAW--LEEHPA--CNLFTCGFDRMV  470 (481)
T ss_pred             ccc---------cCCcccccccceeeeeeec--cccCcc--ccccccccccee
Confidence            543         222 244678889999999  544310  348999998876

>KOG0641|consensus

Probab=99.96  E-value=2.3e-26  Score=168.35  Aligned_cols=247  Identities=17%  Similarity=0.209  Sum_probs=189.9

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEe------CCCCee------eEEEcCccccccccceeEEEEcCCC
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWD------SVGGEI------KATYRPYNQVDEVTHAYSLAFSLDG  124 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd------~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~  124 (334)
                      ....|.+++|       +|.|.+.++|+...+++|-.      +..+..      ...++.  ...+.+.|+|.+|+|+|
T Consensus        31 dsqairav~f-------hp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr--~khhkgsiyc~~ws~~g  101 (350)
T KOG0641|consen   31 DSQAIRAVAF-------HPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKR--NKHHKGSIYCTAWSPCG  101 (350)
T ss_pred             chhheeeEEe-------cCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeee--ccccCccEEEEEecCcc
Confidence            3455666555       77999999999999888753      222211      111111  11223389999999999


Q ss_pred             CEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC---CCcEEEEee-cCCeEEEEECCCCCceEeecc
Q psy2305         125 NKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV---HPDICALGT-YSKIIGLFSDSDGRPLFFLKG  199 (334)
Q Consensus       125 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  199 (334)
                      ++|++|+ |.+|++.-.+.......-..+.+.-|.+.|..++|-.+   +..+|++++ .|-.|++-|-..++..+.+.+
T Consensus       102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg  181 (350)
T KOG0641|consen  102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG  181 (350)
T ss_pred             CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence            9999998 99999987764222222122256778999999999543   222677655 466788888889999999999


Q ss_pred             CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccccc-----CCceEEEEecCCCceEEeeecCCcEEEE
Q psy2305         200 HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS-----TNQRVYFDLTSCSNYLLSGNTNGDLSIW  274 (334)
Q Consensus       200 ~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~dg~i~iw  274 (334)
                      |.+-|.++ ++=+|-++++|+ .|.+|++||++. ...+..+....+     ...+.+++..|.|++|++|-.|....+|
T Consensus       182 htghilal-yswn~~m~~sgs-qdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly  258 (350)
T KOG0641|consen  182 HTGHILAL-YSWNGAMFASGS-QDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY  258 (350)
T ss_pred             CcccEEEE-EEecCcEEEccC-CCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence            99999876 455788999999 899999999997 555555543322     3457788999999999999999999999


Q ss_pred             eCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         275 NVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       275 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |++.+            ++++.+..|...|.++.|  +|.-    .+|++|+.|..|+.
T Consensus       259 dirg~------------r~iq~f~phsadir~vrf--sp~a----~yllt~syd~~ikl  299 (350)
T KOG0641|consen  259 DIRGG------------RMIQRFHPHSADIRCVRF--SPGA----HYLLTCSYDMKIKL  299 (350)
T ss_pred             EeeCC------------ceeeeeCCCccceeEEEe--CCCc----eEEEEecccceEEE
Confidence            99998            899999999999999999  9999    99999999998874

>KOG0289|consensus

Probab=99.96  E-value=1.8e-27  Score=189.13  Aligned_cols=227  Identities=14%  Similarity=0.216  Sum_probs=195.9

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      .|....+++|+.|..+.++|...++.+..+++|..     .|+.+.|+|+...+++++ |..|++|...... ...    
T Consensus       228 ~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~k-----ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~----  297 (506)
T KOG0289|consen  228 IPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTK-----KITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPT----  297 (506)
T ss_pred             cCCCCcceecCCCCceEEEecchhhhhhhccCcce-----EEEEEEeccchhheeecCCcceEEeecccccc-Ccc----
Confidence            44557899999999999999999999999998766     899999999999999887 9999999988633 222    


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc--CCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG--HNGGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                      ....|..+|+.+..+|.|. +|++++.|++..+.|++++..+.....  ..-.+++.+|+|||..|.+|. .|+.++|||
T Consensus       298 ~~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt-~d~~vkiwd  375 (506)
T KOG0289|consen  298 SSRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT-PDGVVKIWD  375 (506)
T ss_pred             ccccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC-CCceEEEEE
Confidence            5678999999999999999 999999999999999999988776653  234589999999999999999 999999999


Q ss_pred             ccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccc-cccceeee
Q psy2305         231 LRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ-DCTNGVRW  309 (334)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~  309 (334)
                      +.+ +..+..|.+|  ...+..++|+.+|-||+++..|+.|++||++..            +...++.-.. ..+.++.|
T Consensus       376 lks-~~~~a~Fpgh--t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl------------~n~kt~~l~~~~~v~s~~f  440 (506)
T KOG0289|consen  376 LKS-QTNVAKFPGH--TGPVKAISFSENGYWLATAADDGSVKLWDLRKL------------KNFKTIQLDEKKEVNSLSF  440 (506)
T ss_pred             cCC-ccccccCCCC--CCceeEEEeccCceEEEEEecCCeEEEEEehhh------------cccceeeccccccceeEEE
Confidence            998 6678888886  788999999999999999999999999999987            3444443322 36999999


Q ss_pred             ccCCCcccceeeEEeeecceeeee
Q psy2305         310 KHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       310 ~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                        .+.|    .+|+.+|.|=+|++
T Consensus       441 --D~SG----t~L~~~g~~l~Vy~  458 (506)
T KOG0289|consen  441 --DQSG----TYLGIAGSDLQVYI  458 (506)
T ss_pred             --cCCC----CeEEeecceeEEEE
Confidence              9999    99999999888775

>KOG2055|consensus

Probab=99.96  E-value=1e-26  Score=186.19  Aligned_cols=280  Identities=14%  Similarity=0.073  Sum_probs=212.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-EE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-YF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~l   80 (334)
                      ..|+++.|+|....|++++.|++++||.++.....            ....+. ....+|...+|       .|+|. .+
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~------------~lqS~~-l~~fPi~~a~f-------~p~G~~~i  273 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP------------KLQSIH-LEKFPIQKAEF-------APNGHSVI  273 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccCh------------hheeee-eccCccceeee-------cCCCceEE
Confidence            36899999999999999999999999999876542            111111 13456666665       66888 89


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++++....++.||+.+.+..+.-...... + ..+.....+|++++|+..+ .|.|.+.-..+ +..+.     ...-.+
T Consensus       274 ~~s~rrky~ysyDle~ak~~k~~~~~g~e-~-~~~e~FeVShd~~fia~~G~~G~I~lLhakT-~eli~-----s~KieG  345 (514)
T KOG2055|consen  274 FTSGRRKYLYSYDLETAKVTKLKPPYGVE-E-KSMERFEVSHDSNFIAIAGNNGHIHLLHAKT-KELIT-----SFKIEG  345 (514)
T ss_pred             EecccceEEEEeeccccccccccCCCCcc-c-chhheeEecCCCCeEEEcccCceEEeehhhh-hhhhh-----eeeecc
Confidence            99999999999999988765433332222 1 1678889999999999776 99999998876 44433     233467


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCe--EEEEEccCCcEEEeeecCCCeEEEEEccCC---
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGI--THLEFSSNGILLFSGARKDCEIICWDLRNP---  234 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~---  234 (334)
                      .|..++|+.+++ .|++.+.+|.|.+||+++..+++.+.. .+.|  ++++.+++|.+|++|+ ..|.+.|||..+.   
T Consensus       346 ~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~~~s  422 (514)
T KOG2055|consen  346 VVSDFTFSSDSK-ELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSCFAS  422 (514)
T ss_pred             EEeeEEEecCCc-EEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEecc-CcceEEEeccchhhcc
Confidence            899999999999 888888899999999999999988863 3333  5677889999999999 8999999997641   


Q ss_pred             --CccceeecccccCCceEEEEecCCCceEEeeec--CCcEEEEeCCCCCCCCCCCccccccccceecc---ccccccee
Q psy2305         235 --GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT--NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA---HQDCTNGV  307 (334)
Q Consensus       235 --~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~  307 (334)
                        .+++..+..  ....|.+++|+|++++||.++.  +..+++-.+.+.            .....++.   .-+.|++|
T Consensus       423 ~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~------------TVFsNfP~~n~~vg~vtc~  488 (514)
T KOG2055|consen  423 TNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC------------TVFSNFPTSNTKVGHVTCM  488 (514)
T ss_pred             CCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEEeccce------------eeeccCCCCCCcccceEEE
Confidence              233444432  2456888999999999988765  678999998886            23333332   23468999


Q ss_pred             eeccCCCcccceeeEEeeecceeee
Q psy2305         308 RWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       308 ~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      +|  +|.+    .+||.|.++|++.
T Consensus       489 aF--SP~s----G~lAvGNe~grv~  507 (514)
T KOG2055|consen  489 AF--SPNS----GYLAVGNEAGRVH  507 (514)
T ss_pred             Ee--cCCC----ceEEeecCCCcee
Confidence            99  9999    9999999999874

>KOG0646|consensus

Probab=99.96  E-value=2.9e-27  Score=189.49  Aligned_cols=254  Identities=14%  Similarity=0.197  Sum_probs=199.5

Q ss_pred             EEEEee-CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEe
Q psy2305          15 CLLTNS-NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWD   93 (334)
Q Consensus        15 ~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd   93 (334)
                      |++++. ....|.+|.+......               ....-..++|.+++-       +|+|.+|+.|+..|.|++|.
T Consensus        52 yllsaq~~rp~l~vw~i~k~~~~---------------~q~~v~Pg~v~al~s-------~n~G~~l~ag~i~g~lYlWe  109 (476)
T KOG0646|consen   52 YLLSAQLKRPLLHVWEILKKDQV---------------VQYIVLPGPVHALAS-------SNLGYFLLAGTISGNLYLWE  109 (476)
T ss_pred             heeeecccCccccccccCchhhh---------------hhhcccccceeeeec-------CCCceEEEeecccCcEEEEE
Confidence            444443 3346777777655443               111123456766655       77999999988999999999


Q ss_pred             CCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCC--------CCeeeeecccccccccceEEE
Q psy2305          94 SVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRP--------GRECVSRNLKPWFRKNIVSAI  164 (334)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~--------~~~~~~~~~~~~~~~~~v~~~  164 (334)
                      +.+|..+..+..|-.     .|+++.|+.||.+|++|+ ||.|.+|++..-        -.+..    .+..|.-+|+++
T Consensus       110 lssG~LL~v~~aHYQ-----~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~----~f~~HtlsITDl  180 (476)
T KOG0646|consen  110 LSSGILLNVLSAHYQ-----SITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH----IFSDHTLSITDL  180 (476)
T ss_pred             eccccHHHHHHhhcc-----ceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee----eeccCcceeEEE
Confidence            999999988876554     899999999999999998 999999987531        11112    578899999999


Q ss_pred             EEcCCCC-cEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC--------
Q psy2305         165 AINPVHP-DICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG--------  235 (334)
Q Consensus       165 ~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~--------  235 (334)
                      ...+.|. ..+++++.|.++++||+..+..+.++. ....+.+++.+|-++.++.|+ .+|.|.+.++....        
T Consensus       181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~  258 (476)
T KOG0646|consen  181 QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQ  258 (476)
T ss_pred             EecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC-CcceEEeeehhcCCcccccccc
Confidence            9877632 389999999999999999998888876 567899999999999999999 89999998886421        


Q ss_pred             -------ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceee
Q psy2305         236 -------CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR  308 (334)
Q Consensus       236 -------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  308 (334)
                             .....+.+|.....+++++.+-||.+|++|+.||+++|||+.+.            +.++++....++|+.+.
T Consensus       259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~------------Q~iRtl~~~kgpVtnL~  326 (476)
T KOG0646|consen  259 KGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK------------QCIRTLQTSKGPVTNLQ  326 (476)
T ss_pred             cccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH------------HHHHHHhhhccccceeE
Confidence                   12344556655568999999999999999999999999999998            66677665677888888


Q ss_pred             eccCCCc
Q psy2305         309 WKHHKFE  315 (334)
Q Consensus       309 ~~~s~~~  315 (334)
                      +  .|-.
T Consensus       327 i--~~~~  331 (476)
T KOG0646|consen  327 I--NPLE  331 (476)
T ss_pred             e--eccc
Confidence            8  6654

>KOG0267|consensus

Probab=99.96  E-value=7.8e-29  Score=208.28  Aligned_cols=256  Identities=13%  Similarity=0.173  Sum_probs=213.1

Q ss_pred             CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEE
Q psy2305          12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHL   91 (334)
Q Consensus        12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~i   91 (334)
                      .+..++....+-.+++|+.+....                     |...|.++..       -..++.+++|+.|..+-+
T Consensus         3 ~~~~~m~~~~~t~Lr~~~~~~~~~---------------------hsaav~~lk~-------~~s~r~~~~Gg~~~k~~L   54 (825)
T KOG0267|consen    3 GMEFLMKTKRATKLRVWDTREFVA---------------------HSAAVGCLKI-------RKSSRSLVTGGEDEKVNL   54 (825)
T ss_pred             cccccceeeeeeccccccchhhhh---------------------hhhhhceeee-------eccceeeccCCCceeecc
Confidence            344455555666778888765432                     3344444332       235678999999999999


Q ss_pred             EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCC
Q psy2305          92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVH  170 (334)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  170 (334)
                      |.+.....+..+.+|..     +|.++.|+++..+|++|. +|+|++||+.. .+.+.    .+.+|...+.++.|+|-+
T Consensus        55 ~~i~kp~~i~S~~~hes-----pIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vr----tLtgh~~~~~sv~f~P~~  124 (825)
T KOG0267|consen   55 WAIGKPNAITSLTGHES-----PIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVR----TLTGHLLNITSVDFHPYG  124 (825)
T ss_pred             ccccCCchhheeeccCC-----cceeeecCcchhhhcccccCCceeeeehhh-hhhhh----hhhccccCcceeeeccce
Confidence            98876666666777665     999999999999999887 99999999996 55555    689999999999999999


Q ss_pred             CcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCce
Q psy2305         171 PDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR  250 (334)
Q Consensus       171 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  250 (334)
                      . +++.|+.|..+.+||++...+.+.+.+|...+..+.|+|+|++++.++ +|.+++|||... ++....|..|  ...+
T Consensus       125 ~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~a-gk~~~ef~~~--e~~v  199 (825)
T KOG0267|consen  125 E-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTA-GKLSKEFKSH--EGKV  199 (825)
T ss_pred             E-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC-Ccceeeeecccc-cccccccccc--cccc
Confidence            9 999999999999999998899999999999999999999999999999 899999999987 8888888877  5667


Q ss_pred             EEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecc
Q psy2305         251 VYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQ  328 (334)
Q Consensus       251 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d  328 (334)
                      .++.|+|..-++++|+.|+++++||+++-            +.+.........|.+.+|  +|++    ..+++|..+
T Consensus       200 ~sle~hp~e~Lla~Gs~d~tv~f~dletf------------e~I~s~~~~~~~v~~~~f--n~~~----~~~~~G~q~  259 (825)
T KOG0267|consen  200 QSLEFHPLEVLLAPGSSDRTVRFWDLETF------------EVISSGKPETDGVRSLAF--NPDG----KIVLSGEQI  259 (825)
T ss_pred             cccccCchhhhhccCCCCceeeeecccee------------EEeeccCCccCCceeeee--cCCc----eeeecCchh
Confidence            77889999999999999999999999986            566666666778999999  9999    877776544

>KOG0269|consensus

Probab=99.96  E-value=7.6e-28  Score=203.79  Aligned_cols=241  Identities=17%  Similarity=0.196  Sum_probs=188.7

Q ss_pred             eEEEEcC-CCcEEEEeeCCCeEEEEECCC---CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           5 EDVDEAP-DGTCLLTNSNDNHLRTFDLPS---ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         5 ~~~~~sp-~~~~l~~~~~d~~v~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      ..+.|+. +.++|||++..|.|.+||+..   .+..               .....|...+..++|++.      ...+|
T Consensus        91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l---------------~~f~EH~Rs~~~ldfh~t------ep~il  149 (839)
T KOG0269|consen   91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL---------------TVFNEHERSANKLDFHST------EPNIL  149 (839)
T ss_pred             hhcccccchhhhheeecCCCcEEEEecCccccchhh---------------hHhhhhccceeeeeeccC------CccEE
Confidence            4566664 467999999999999999987   2222               233457788999999753      55689


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC-CCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD-GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      ++|+.||+|++||++..+...++.....     .|+.++|+|. +..++++. .|.+++||++.+.+...    .+..|.
T Consensus       150 iSGSQDg~vK~~DlR~~~S~~t~~~nSE-----SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~----k~~AH~  220 (839)
T KOG0269|consen  150 ISGSQDGTVKCWDLRSKKSKSTFRSNSE-----SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK----KLTAHN  220 (839)
T ss_pred             EecCCCceEEEEeeecccccccccccch-----hhhceeeccCCCceEEEecCCceEEEeeccCchhHHH----Hhhccc
Confidence            9999999999999998887777776333     8999999995 56777777 79999999998666555    688999


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc--eEeeccCCCCeEEEEEccCCcE-EEeee-cCCCeEEEEEccCC
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNGIL-LFSGA-RKDCEIICWDLRNP  234 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~-l~~~~-~~d~~i~iwd~~~~  234 (334)
                      ++|.|+.|+|++. +||+|+.|+.|+|||+.+++.  +.++. ...++..++|-|..++ |++++ ..|-.|+|||++.+
T Consensus       221 GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  221 GPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             CceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence            9999999999888 999999999999999976543  33333 3568999999997764 55543 13778999999987


Q ss_pred             CccceeecccccCCceEEEEecC-CCceEEeeecCCcEEEEeCCCC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      --+...+..|  ...+..++|.. |...|.+++.||.|..-.++.+
T Consensus       299 YIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  299 YIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             cccceeeecc--CccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            7788888876  45566677754 4567889999998876665554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=4.4e-25  Score=182.76  Aligned_cols=264  Identities=13%  Similarity=0.075  Sum_probs=187.0

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE-EEeeCCCcEEE
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF-LCSSMYAPIHL   91 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l-~~~~~d~~i~i   91 (334)
                      +..+++++.|+.|++||+.+++..              ..+..+  ..+..+       +++|+++.+ ++++.++.|++
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~--------------~~~~~~--~~~~~l-------~~~~dg~~l~~~~~~~~~v~~   57 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVT--------------RTFPVG--QRPRGI-------TLSKDGKLLYVCASDSDTIQV   57 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceE--------------EEEECC--CCCCce-------EECCCCCEEEEEECCCCeEEE
Confidence            357889999999999999887754              233321  223344       447898876 56678899999


Q ss_pred             EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC
Q psy2305          92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV  169 (334)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  169 (334)
                      ||..+++....+....      .+..++|+|+++.++++ . ++.+++||+.+ .+.+..    +. +...+.+++|+|+
T Consensus        58 ~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~----~~-~~~~~~~~~~~~d  125 (300)
T TIGR03866        58 IDLATGEVIGTLPSGP------DPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAE----IP-VGVEPEGMAVSPD  125 (300)
T ss_pred             EECCCCcEEEeccCCC------CccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeE----ee-CCCCcceEEECCC
Confidence            9999988777665422      45678999999987654 4 79999999986 443332    22 2334678999999


Q ss_pred             CCcEEEEeecCC-eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc---
Q psy2305         170 HPDICALGTYSK-IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV---  245 (334)
Q Consensus       170 ~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---  245 (334)
                      +. +++++..++ .+.+||.++++....+.. ...+..++|+|++++|++++..++.|++||+++ ++.+..+..+.   
T Consensus       126 g~-~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~  202 (300)
T TIGR03866       126 GK-IVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT-RKVIKKITFEIPGV  202 (300)
T ss_pred             CC-EEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc-ceeeeeeeeccccc
Confidence            99 888877664 577889988776655432 334578999999998865542589999999987 55545443221   


Q ss_pred             --cCCceEEEEecCCCceEEee-ecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeE
Q psy2305         246 --STNQRVYFDLTSCSNYLLSG-NTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVAD  322 (334)
Q Consensus       246 --~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l  322 (334)
                        .......++|+|++++++++ +.++.+.+||+.++            +....+. +...+.+++|  +|++    ++|
T Consensus       203 ~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~------------~~~~~~~-~~~~~~~~~~--~~~g----~~l  263 (300)
T TIGR03866       203 HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY------------EVLDYLL-VGQRVWQLAF--TPDE----KYL  263 (300)
T ss_pred             ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC------------cEEEEEE-eCCCcceEEE--CCCC----CEE
Confidence              11223467899999986543 45678999999886            4443332 3457899999  9999    888


Q ss_pred             Eee-ecceeeee
Q psy2305         323 ATC-SGQITNVK  333 (334)
Q Consensus       323 ~t~-~~d~~i~~  333 (334)
                      +++ +.++.+++
T Consensus       264 ~~~~~~~~~i~v  275 (300)
T TIGR03866       264 LTTNGVSNDVSV  275 (300)
T ss_pred             EEEcCCCCeEEE
Confidence            876 45787764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0650|consensus

Probab=99.95  E-value=1.2e-26  Score=191.38  Aligned_cols=285  Identities=15%  Similarity=0.184  Sum_probs=215.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|+++...|.|.+||+|+.||+|+||.+.++..+              ..+  ...+.|.+++|+|     .++-.+||
T Consensus       401 g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv--------------r~~--~~d~~I~~vaw~P-----~~~~~vLA  459 (733)
T KOG0650|consen  401 GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV--------------RTV--QFDSEIRSVAWNP-----LSDLCVLA  459 (733)
T ss_pred             CeEEEEEecCCcceeeecCCCCcEEEEEeecceEE--------------EEE--eecceeEEEEecC-----CCCceeEE
Confidence            56899999999999999999999999999999976              222  3456899999988     33444444


Q ss_pred             EeeCCCcEEEEeCCCCeee---------EEE--------------cC---------ccccccccceeEEEEcCCCCEEEE
Q psy2305          82 CSSMYAPIHLWDSVGGEIK---------ATY--------------RP---------YNQVDEVTHAYSLAFSLDGNKIYA  129 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~---------~~~--------------~~---------~~~~~~~~~v~~~~~~~~~~~l~~  129 (334)
                      ++-.+ .+.|.+..-|..+         ...              ..         +....+...|..+.|+..|.+|++
T Consensus       460 vA~~~-~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlat  538 (733)
T KOG0650|consen  460 VAVGE-CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLAT  538 (733)
T ss_pred             EEecC-ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEE
Confidence            44322 2333332211000         000              00         000011227899999999999996


Q ss_pred             ee----CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeE
Q psy2305         130 GF----LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGIT  205 (334)
Q Consensus       130 ~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  205 (334)
                      ..    ...|.|+++.. ... +.   .+....+.|.++.|+|... +|++++ ...|+|||+.....++.+......|.
T Consensus       539 V~~~~~~~~VliHQLSK-~~s-Q~---PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS  611 (733)
T KOG0650|consen  539 VMPDSGNKSVLIHQLSK-RKS-QS---PFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQELVKKLLTGSKWIS  611 (733)
T ss_pred             eccCCCcceEEEEeccc-ccc-cC---chhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHHHHHHHhcCCeeee
Confidence            53    46899999985 222 22   4556678899999999999 777665 57899999988888888877788999


Q ss_pred             EEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEe------CCCC
Q psy2305         206 HLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN------VNTS  279 (334)
Q Consensus       206 ~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd------~~~~  279 (334)
                      .++.+|.|..|+.++ .|+.+..+|+....++.+.+..|  ...+.+++|++.-.++++|+.||++.|+.      +...
T Consensus       612 ~msihp~GDnli~gs-~d~k~~WfDldlsskPyk~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qn  688 (733)
T KOG0650|consen  612 SMSIHPNGDNLILGS-YDKKMCWFDLDLSSKPYKTLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQN  688 (733)
T ss_pred             eeeecCCCCeEEEec-CCCeeEEEEcccCcchhHHhhhh--hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcC
Confidence            999999999999999 89999999999867788888776  66778899999999999999999999984      2222


Q ss_pred             CCCCCCCccccccccceecccccc----cceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         280 NLPSSPYEESVQEPLYKFSAHQDC----TNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .++         .++..+.+|...    |.++.|  +|..    .+|++++.||+|..
T Consensus       689 pli---------VPlK~L~gH~~~~~~gVLd~~w--HP~q----pWLfsAGAd~tirl  731 (733)
T KOG0650|consen  689 PLI---------VPLKRLRGHEKTNDLGVLDTIW--HPRQ----PWLFSAGADGTIRL  731 (733)
T ss_pred             Cce---------EeeeeccCceeecccceEeecc--cCCC----ceEEecCCCceEEe
Confidence            222         677888888765    889999  9999    99999999999864

>KOG2106|consensus

Probab=99.95  E-value=3.4e-25  Score=179.50  Aligned_cols=286  Identities=13%  Similarity=0.150  Sum_probs=214.0

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|.|++|.++|. ++||..+|.|.||+..+.+..              +... .|.+.|++++.       -.+|. |++
T Consensus       248 ~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~--------------k~~~-aH~ggv~~L~~-------lr~Gt-llS  303 (626)
T KOG2106|consen  248 FVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS--------------KQVH-AHDGGVFSLCM-------LRDGT-LLS  303 (626)
T ss_pred             EEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE--------------eEee-ecCCceEEEEE-------ecCcc-Eee
Confidence            589999999997 679999999999999877654              3444 57788998887       44776 555


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccc------------------------------------cccccceeEEEEcCCCCE
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQ------------------------------------VDEVTHAYSLAFSLDGNK  126 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~------------------------------------~~~~~~v~~~~~~~~~~~  126 (334)
                      |+.|..|..||-. -+.++..+..+.                                    ..+....+.++.+|+.++
T Consensus       304 GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q  382 (626)
T KOG2106|consen  304 GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQ  382 (626)
T ss_pred             cCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhh
Confidence            9999999999831 111111100000                                    001125688999999988


Q ss_pred             EEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeE
Q psy2305         127 IYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGIT  205 (334)
Q Consensus       127 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  205 (334)
                      +++++ |+.+++|+ .  .+....     .....++.|+.|+|.|  .+|.|+..|...+.|.++...+..-.. ..+++
T Consensus       383 ~~T~gqdk~v~lW~-~--~k~~wt-----~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls  451 (626)
T KOG2106|consen  383 LLTCGQDKHVRLWN-D--HKLEWT-----KIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLS  451 (626)
T ss_pred             eeeccCcceEEEcc-C--CceeEE-----EEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEec-CCceE
Confidence            88776 99999999 3  444443     3346788999999999  799999999999999998665555444 88999


Q ss_pred             EEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCC-
Q psy2305         206 HLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSS-  284 (334)
Q Consensus       206 ~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-  284 (334)
                      .++|+|+|.+|+.|+ .|+.|+||.+...+........+. ..+++.++||+|+++|.+-+.|-.|..|.....+...+ 
T Consensus       452 ~v~ysp~G~~lAvgs-~d~~iyiy~Vs~~g~~y~r~~k~~-gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~  529 (626)
T KOG2106|consen  452 VVRYSPDGAFLAVGS-HDNHIYIYRVSANGRKYSRVGKCS-GSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSV  529 (626)
T ss_pred             EEEEcCCCCEEEEec-CCCeEEEEEECCCCcEEEEeeeec-CceeEEeeecCCCceEEeccCceEEEEEccccCccccee
Confidence            999999999999999 999999999988666666655553 48899999999999999999999999994433222200 


Q ss_pred             CCcc--------------------------------------------------ccccccceecccccccceeeeccCCC
Q psy2305         285 PYEE--------------------------------------------------SVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       285 ~~~~--------------------------------------------------~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                      .+-+                                                  ....+..++.+|.+.|++++|  ..+
T Consensus       530 kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~F--l~~  607 (626)
T KOG2106|consen  530 KDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAF--LCK  607 (626)
T ss_pred             cceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEE--eeC
Confidence            0000                                                  123345667789999999999  888


Q ss_pred             cccceeeEEeeecceeee
Q psy2305         315 ERDLLVADATCSGQITNV  332 (334)
Q Consensus       315 ~~~~~~~l~t~~~d~~i~  332 (334)
                      .    ..|++.+.|..|-
T Consensus       608 d----~~li~tg~D~Si~  621 (626)
T KOG2106|consen  608 D----SHLISTGKDTSIM  621 (626)
T ss_pred             C----ceEEecCCCceEE
Confidence            7    7888888887764

>KOG0639|consensus

Probab=99.95  E-value=2.3e-27  Score=191.97  Aligned_cols=237  Identities=16%  Similarity=0.245  Sum_probs=197.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|+++.+.|||+.|++|+.-.+|.|||+......                +.    ....+.+-....++.+||.++.+
T Consensus       466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTpr----------------ik----aeltssapaCyALa~spDakvcF  525 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR----------------IK----AELTSSAPACYALAISPDAKVCF  525 (705)
T ss_pred             cceeeeEecCCCceEEeccccceeeeeeccCCCcc----------------hh----hhcCCcchhhhhhhcCCccceee
Confidence            35889999999999999999999999999876542                11    11222111223567799999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      ++..||.|.|||+.+...++.|++|..     .+.|+.+++||..|-+|+ |++|+.||+++ ++.+.     .......
T Consensus       526 sccsdGnI~vwDLhnq~~VrqfqGhtD-----GascIdis~dGtklWTGGlDntvRcWDlre-grqlq-----qhdF~SQ  594 (705)
T KOG0639|consen  526 SCCSDGNIAVWDLHNQTLVRQFQGHTD-----GASCIDISKDGTKLWTGGLDNTVRCWDLRE-GRQLQ-----QHDFSSQ  594 (705)
T ss_pred             eeccCCcEEEEEcccceeeecccCCCC-----CceeEEecCCCceeecCCCccceeehhhhh-hhhhh-----hhhhhhh
Confidence            999999999999999999999998665     899999999999999998 99999999997 55443     2344678


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      |.++.++|++. ++++|-+++.+.+.... +...+.+.-|+..|.++.|.+.|+++++.+ .|+.+..|...- +..+..
T Consensus       595 IfSLg~cP~~d-WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrtPy-GasiFq  670 (705)
T KOG0639|consen  595 IFSLGYCPTGD-WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPY-GASIFQ  670 (705)
T ss_pred             heecccCCCcc-ceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecC-chhhhhhccCcc-ccceee
Confidence            99999999999 99999999999998864 444566777999999999999999999999 999999999876 555554


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  276 (334)
                      .+   ....++++++|.|.+|+++|+.|....+|.+
T Consensus       671 sk---E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  671 SK---ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cc---ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            44   3667889999999999999999988888875

>KOG1539|consensus

Probab=99.95  E-value=3e-25  Score=189.67  Aligned_cols=264  Identities=14%  Similarity=0.167  Sum_probs=210.6

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEe
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWD   93 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd   93 (334)
                      +.++.|+.+|.++||++++++.+              .++.... ..|+++.-       +|-=+.++.|..+|+|.+++
T Consensus       173 NKIvvGs~~G~lql~Nvrt~K~v--------------~~f~~~~-s~IT~ieq-------sPaLDVVaiG~~~G~ViifN  230 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVRTGKVV--------------YTFQEFF-SRITAIEQ-------SPALDVVAIGLENGTVIIFN  230 (910)
T ss_pred             eeEEEeecCCcEEEEEeccCcEE--------------EEecccc-cceeEecc-------CCcceEEEEeccCceEEEEE
Confidence            45788999999999999999987              5666544 77888776       55677899999999999999


Q ss_pred             CCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCCeeeee-----------------cc--
Q psy2305          94 SVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGRECVSR-----------------NL--  152 (334)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~-----------------~~--  152 (334)
                      ++.++.+..|+....     +|++++|.-||+.+. +|. .|.+.+||++.. +.....                 ++  
T Consensus       231 lK~dkil~sFk~d~g-----~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-kl~~v~~nah~~sv~~~~fl~~epVl~  304 (910)
T KOG1539|consen  231 LKFDKILMSFKQDWG-----RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-KLINVTRNAHYGSVTGATFLPGEPVLV  304 (910)
T ss_pred             cccCcEEEEEEcccc-----ceeEEEeccCCCeeEEeccCCceEEEEEcCCC-eeeeeeeccccCCcccceecCCCceEe
Confidence            999999999986423     899999999997665 555 699999998741 100000                 00  


Q ss_pred             --------------------------------------------------------------------------------
Q psy2305         153 --------------------------------------------------------------------------------  152 (334)
Q Consensus       153 --------------------------------------------------------------------------------  152 (334)
                                                                                                      
T Consensus       305 ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk  384 (910)
T KOG1539|consen  305 TAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK  384 (910)
T ss_pred             eccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------cccccccceEEEEEcCCCCcEE
Q psy2305         153 ----------------------------------------------------------KPWFRKNIVSAIAINPVHPDIC  174 (334)
Q Consensus       153 ----------------------------------------------------------~~~~~~~~v~~~~~~~~~~~~l  174 (334)
                                                                                .+......+++++.++.|+ +.
T Consensus       385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~  463 (910)
T KOG1539|consen  385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FV  463 (910)
T ss_pred             ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eE
Confidence                                                                      0111124578888899998 88


Q ss_pred             EEeecCCeEEEEECCCCCceEee---ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc-------------
Q psy2305         175 ALGTYSKIIGLFSDSDGRPLFFL---KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL-------------  238 (334)
Q Consensus       175 ~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~-------------  238 (334)
                      +.|...|.|-+|++++|-...++   ..|.++|++++...-++.+++++ .+|.+++||+.. ..++             
T Consensus       464 ~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-~~Gilkfw~f~~-k~l~~~l~l~~~~~~iv  541 (910)
T KOG1539|consen  464 FIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-ADGILKFWDFKK-KVLKKSLRLGSSITGIV  541 (910)
T ss_pred             EEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-CcceEEEEecCC-cceeeeeccCCCcceee
Confidence            89999999999999999888888   58999999999998889999999 899999999975 2211             


Q ss_pred             ----------------------------eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccc
Q psy2305         239 ----------------------------HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESV  290 (334)
Q Consensus       239 ----------------------------~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  290 (334)
                                                  +.+.+|  ...+++++|||||++|++++.|++|++||+.++           
T Consensus       542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh--~nritd~~FS~DgrWlisasmD~tIr~wDlpt~-----------  608 (910)
T KOG1539|consen  542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH--GNRITDMTFSPDGRWLISASMDSTIRTWDLPTG-----------  608 (910)
T ss_pred             eeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc--ccceeeeEeCCCCcEEEEeecCCcEEEEeccCc-----------
Confidence                                        122233  677899999999999999999999999999998           


Q ss_pred             ccccceecccccccceeeeccCCCcccceeeEEeeecce
Q psy2305         291 QEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQI  329 (334)
Q Consensus       291 ~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~  329 (334)
                       ..+..+.- ..+..++.|  +|+|    .+|||+..|+
T Consensus       609 -~lID~~~v-d~~~~sls~--SPng----D~LAT~Hvd~  639 (910)
T KOG1539|consen  609 -TLIDGLLV-DSPCTSLSF--SPNG----DFLATVHVDQ  639 (910)
T ss_pred             -ceeeeEec-CCcceeeEE--CCCC----CEEEEEEecC
Confidence             55555543 457899999  9999    9999998873

>KOG0321|consensus

Probab=99.95  E-value=2.4e-26  Score=190.87  Aligned_cols=289  Identities=18%  Similarity=0.226  Sum_probs=206.1

Q ss_pred             EEEEcC---CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           6 DVDEAP---DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         6 ~~~~sp---~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      +..|++   ....||.+..||.|.++|.......         +.+........|.+.|.++.|       -|....|++
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr---------~ee~~lk~~~aH~nAifDl~w-------apge~~lVs  117 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR---------LEERQLKKPLAHKNAIFDLKW-------APGESLLVS  117 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcc---------hhhhhhcccccccceeEeecc-------CCCceeEEE
Confidence            456665   3457899999999999998765432         000001223347789999999       446677999


Q ss_pred             eeCCCcEEEEeCCCCeeeEE--EcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCCee-----------
Q psy2305          83 SSMYAPIHLWDSVGGEIKAT--YRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGREC-----------  147 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~-----------  147 (334)
                      ++.|.++++||+++.++...  +.+|..     .|.+++|.|+...++ +|+ ||.|.|||++..+...           
T Consensus       118 asGDsT~r~Wdvk~s~l~G~~~~~GH~~-----SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~  192 (720)
T KOG0321|consen  118 ASGDSTIRPWDVKTSRLVGGRLNLGHTG-----SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR  192 (720)
T ss_pred             ccCCceeeeeeeccceeecceeeccccc-----ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence            99999999999999888765  555443     899999999887655 666 9999999997532000           


Q ss_pred             ------eeecc-----cccccccceEE---EEEcCCCCcEEEEeec-CCeEEEEECCCCCceEee--------ccC---C
Q psy2305         148 ------VSRNL-----KPWFRKNIVSA---IAINPVHPDICALGTY-SKIIGLFSDSDGRPLFFL--------KGH---N  201 (334)
Q Consensus       148 ------~~~~~-----~~~~~~~~v~~---~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~--------~~~---~  201 (334)
                            ...++     ....+...|.+   +.+..|.. .||+++. |+.|++||++........        ..|   .
T Consensus       193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs  271 (720)
T KOG0321|consen  193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRS  271 (720)
T ss_pred             ccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccce
Confidence                  00000     12223334444   55556776 8888877 999999999876443322        223   3


Q ss_pred             CCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC-ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPG-CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       202 ~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      -.+.++.....|.+|++.+ .|+.|++|++.... .++..+.++.....-..-..+|++.+|++|+.|...++|.+.+..
T Consensus       272 ~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e  350 (720)
T KOG0321|consen  272 VGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE  350 (720)
T ss_pred             eeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence            3577888888899999988 89999999998633 344455554333333334579999999999999999999999874


Q ss_pred             CCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         281 LPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                                 .....+.+|...|+.++|++++..     -++||++|.+++|
T Consensus       351 -----------~~~~~l~Ght~eVt~V~w~pS~~t-----~v~TcSdD~~~ki  387 (720)
T KOG0321|consen  351 -----------APPALLLGHTREVTTVRWLPSATT-----PVATCSDDFRVKI  387 (720)
T ss_pred             -----------CChhhhhCcceEEEEEeeccccCC-----CceeeccCcceEE
Confidence                       567788999999999999555555     4778899998875

>KOG2445|consensus

Probab=99.95  E-value=2.7e-25  Score=169.55  Aligned_cols=253  Identities=18%  Similarity=0.260  Sum_probs=183.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      |-|.++.|.+.|+++|+|+.|++|+|||.+.....          +.+....+. |.+.|..+.|.+     ..-|+.+|
T Consensus        14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~----------W~~Ts~Wra-h~~Si~rV~WAh-----PEfGqvvA   77 (361)
T KOG2445|consen   14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT----------WSCTSSWRA-HDGSIWRVVWAH-----PEFGQVVA   77 (361)
T ss_pred             ceeeeeeecccCceeeeccCCCcEEEEeccCCCCc----------eEEeeeEEe-cCCcEEEEEecC-----ccccceEE
Confidence            56899999999999999999999999997544322          112233443 668899999964     23589999


Q ss_pred             EeeCCCcEEEEeCCCC-------e--eeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeee
Q psy2305          82 CSSMYAPIHLWDSVGG-------E--IKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVS  149 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~-------~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~  149 (334)
                      +++.|+++.||.-...       +  ...++..     ..+.|+.+.|.|.  |-.|++++ ||.++||+...+.... .
T Consensus        78 ~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D-----srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs-~  151 (361)
T KOG2445|consen   78 TCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVD-----SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS-Q  151 (361)
T ss_pred             EEecCCceeeeeecccccccccceeEEEEEeec-----CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc-c
Confidence            9999999999964211       1  1122222     2238999999996  56777777 9999999977533221 1


Q ss_pred             ecc---------cccccccceEEEEEcCCC---CcEEEEeecC-----CeEEEEECCCC----CceEeeccCCCCeEEEE
Q psy2305         150 RNL---------KPWFRKNIVSAIAINPVH---PDICALGTYS-----KIIGLFSDSDG----RPLFFLKGHNGGITHLE  208 (334)
Q Consensus       150 ~~~---------~~~~~~~~v~~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~----~~~~~~~~~~~~i~~~~  208 (334)
                      ..+         ....+..+..|+.|+|..   + +||.|+.+     +.++||....+    ..+.++.+|..+|+.++
T Consensus       152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p-~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~  230 (361)
T KOG2445|consen  152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEP-LIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDIS  230 (361)
T ss_pred             chhhhhhhhccCCcccccCcceEEeeccccccCc-eEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeee
Confidence            111         223466788899999753   4 78888765     47888887543    34566789999999999


Q ss_pred             EccCC----cEEEeeecCCCeEEEEEccCCC-------------------ccceeecccccCCceEEEEecCCCceEEee
Q psy2305         209 FSSNG----ILLFSGARKDCEIICWDLRNPG-------------------CILHTFPRQVSTNQRVYFDLTSCSNYLLSG  265 (334)
Q Consensus       209 ~~~~~----~~l~~~~~~d~~i~iwd~~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  265 (334)
                      |.|+-    ..|++++ .|| |+||.+....                   +.+..+..  +...++.+.|+-.|..|++.
T Consensus       231 wAPn~Gr~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~--H~~~VWrv~wNmtGtiLsSt  306 (361)
T KOG2445|consen  231 WAPNIGRSYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDD--HNGEVWRVRWNMTGTILSST  306 (361)
T ss_pred             eccccCCceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccC--CCCceEEEEEeeeeeEEeec
Confidence            99962    4789999 899 9999997311                   01122333  36789999999999999999


Q ss_pred             ecCCcEEEEeCCCCCC
Q psy2305         266 NTNGDLSIWNVNTSNL  281 (334)
Q Consensus       266 ~~dg~i~iwd~~~~~~  281 (334)
                      +.||.|++|...-.++
T Consensus       307 GdDG~VRLWkany~n~  322 (361)
T KOG2445|consen  307 GDDGCVRLWKANYNNL  322 (361)
T ss_pred             CCCceeeehhhhhhhh
Confidence            9999999998765543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=8.6e-25  Score=181.04  Aligned_cols=256  Identities=11%  Similarity=0.037  Sum_probs=181.6

Q ss_pred             ceeEEEEcCCCcEE-EEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGTCL-LTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l-~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .+.+++|+|+|+.+ ++++.++.|++||..+++..              ..+..+  ..+..++       ++|+++.++
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--------------~~~~~~--~~~~~~~-------~~~~g~~l~   88 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--------------GTLPSG--PDPELFA-------LHPNGKILY   88 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--------------EeccCC--CCccEEE-------ECCCCCEEE
Confidence            36789999999876 56678899999999887654              122221  1223334       477888775


Q ss_pred             Ee-eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-CcEEEEEcCCCCCeeeeecccccccc
Q psy2305          82 CS-SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-SEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        82 ~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      ++ ..++.+++||+.+++.+..+....      .+.+++|+|++++++++. + ..+..||..+ +.....    . ...
T Consensus        89 ~~~~~~~~l~~~d~~~~~~~~~~~~~~------~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~~~~~~----~-~~~  156 (300)
T TIGR03866        89 IANEDDNLVTVIDIETRKVLAEIPVGV------EPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-YEIVDN----V-LVD  156 (300)
T ss_pred             EEcCCCCeEEEEECCCCeEEeEeeCCC------CcceEEECCCCCEEEEEecCCCeEEEEeCCC-CeEEEE----E-EcC
Confidence            54 568999999999887776665321      467899999999999876 4 4577789875 333321    1 122


Q ss_pred             cceEEEEEcCCCCcEEE-EeecCCeEEEEECCCCCceEeeccCC-------CCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         159 NIVSAIAINPVHPDICA-LGTYSKIIGLFSDSDGRPLFFLKGHN-------GGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                      .....++|+|+++ .++ ++..++.|++||+++++.+..+..+.       .....++|+|++++++++...++.+.+||
T Consensus       157 ~~~~~~~~s~dg~-~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d  235 (300)
T TIGR03866       157 QRPRFAEFTADGK-ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD  235 (300)
T ss_pred             CCccEEEECCCCC-EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence            3457899999999 664 45568999999999988776654221       12346889999998655432577899999


Q ss_pred             ccCCCccceeecccccCCceEEEEecCCCceEEee-ecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeee
Q psy2305         231 LRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSG-NTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW  309 (334)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  309 (334)
                      .++ ++....+.   ....+.+++|+|+|++|+++ ..+|.|.+||+.++            +.+..+... ...+++++
T Consensus       236 ~~~-~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~------------~~~~~~~~~-~~~~~~~~  298 (300)
T TIGR03866       236 AKT-YEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL------------KVIKSIKVG-RLPWGVVV  298 (300)
T ss_pred             CCC-CcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC------------cEEEEEEcc-cccceeEe
Confidence            986 55444332   13457788999999999876 45899999999998            666666544 45588887


Q ss_pred             ccCC
Q psy2305         310 KHHK  313 (334)
Q Consensus       310 ~~s~  313 (334)
                        +|
T Consensus       299 --~~  300 (300)
T TIGR03866       299 --RP  300 (300)
T ss_pred             --CC
Confidence              65

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0647|consensus

Probab=99.95  E-value=6.4e-26  Score=172.47  Aligned_cols=240  Identities=14%  Similarity=0.206  Sum_probs=181.6

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS  133 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~  133 (334)
                      .....|.+++|+|.      ...++++++.|++|++|+++. |......    .....++|.+++|+.||..+++|+ |+
T Consensus        25 pP~DsIS~l~FSP~------~~~~~~A~SWD~tVR~wevq~~g~~~~ka----~~~~~~PvL~v~WsddgskVf~g~~Dk   94 (347)
T KOG0647|consen   25 PPEDSISALAFSPQ------ADNLLAAGSWDGTVRIWEVQNSGQLVPKA----QQSHDGPVLDVCWSDDGSKVFSGGCDK   94 (347)
T ss_pred             CcccchheeEeccc------cCceEEecccCCceEEEEEecCCcccchh----hhccCCCeEEEEEccCCceEEeeccCC
Confidence            34567877777441      455677899999999999986 3433211    112223999999999999999887 99


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCC-cEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccC
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHP-DICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN  212 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  212 (334)
                      .+++||+.+ ++. .    ....|..+|..+.|-+... ..|++|+.|.+|+.||+++..++.++. -...++++..-  
T Consensus        95 ~~k~wDL~S-~Q~-~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--  165 (347)
T KOG0647|consen   95 QAKLWDLAS-GQV-S----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--  165 (347)
T ss_pred             ceEEEEccC-CCe-e----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--
Confidence            999999997 433 3    4678999999999976543 378999999999999999999998887 44567776553  


Q ss_pred             CcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccc
Q psy2305         213 GILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQE  292 (334)
Q Consensus       213 ~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  292 (334)
                      ..+++++. .++.|.+|+++.+....+..... ..-.+.+++..++....+.|+-+|++.|..+..+..          +
T Consensus       166 ~pm~vVat-a~r~i~vynL~n~~te~k~~~Sp-Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~----------~  233 (347)
T KOG0647|consen  166 YPMAVVAT-AERHIAVYNLENPPTEFKRIESP-LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP----------K  233 (347)
T ss_pred             CceeEEEe-cCCcEEEEEcCCCcchhhhhcCc-ccceeeEEEEEecCCceEeeeecceEEEEecCCCCc----------c
Confidence            34778888 89999999998744444443332 344567788888888889999999999999988521          2


Q ss_pred             ccceecccc---------cccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         293 PLYKFSAHQ---------DCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       293 ~~~~~~~~~---------~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      .-..++.|.         -.|++++|  +|.-    ..|+|+|.||++.
T Consensus       234 ~nFtFkCHR~~~~~~~~VYaVNsi~F--hP~h----gtlvTaGsDGtf~  276 (347)
T KOG0647|consen  234 DNFTFKCHRSTNSVNDDVYAVNSIAF--HPVH----GTLVTAGSDGTFS  276 (347)
T ss_pred             CceeEEEeccCCCCCCceEEecceEe--eccc----ceEEEecCCceEE
Confidence            233455554         25789999  9998    8999999999985

>KOG1332|consensus

Probab=99.95  E-value=9.8e-27  Score=171.88  Aligned_cols=234  Identities=14%  Similarity=0.166  Sum_probs=181.1

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCe---eeEEEcCccccccccceeEEEEcC--CCCEEEEee-CCcEEEEEcCCCCCee
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGE---IKATYRPYNQVDEVTHAYSLAFSL--DGNKIYAGF-LSEVKIFSTDRPGREC  147 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~-d~~i~i~d~~~~~~~~  147 (334)
                      +--|+.|++++.|++|+|+.+....   .+.++.+|..     +|+.++|..  -|.+|++++ ||.|.||.-.. ++ .
T Consensus        20 DyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G-----PVwqv~wahPk~G~iLAScsYDgkVIiWke~~-g~-w   92 (299)
T KOG1332|consen   20 DYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG-----PVWKVAWAHPKFGTILASCSYDGKVIIWKEEN-GR-W   92 (299)
T ss_pred             hhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCC-----CeeEEeecccccCcEeeEeecCceEEEEecCC-Cc-h
Confidence            4468899999999999999987643   4666776554     999999987  689999987 99999999875 32 1


Q ss_pred             eeecccccccccceEEEEEcCCCC-cEEEEeecCCeEEEEECCCC---CceEeeccCCCCeEEEEEccC---C-------
Q psy2305         148 VSRNLKPWFRKNIVSAIAINPVHP-DICALGTYSKIIGLFSDSDG---RPLFFLKGHNGGITHLEFSSN---G-------  213 (334)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~---~-------  213 (334)
                      .+ ......|...|++++|.|.+- ..|++++.||.|.+++.++.   ...+....|.-.|++++|.|-   |       
T Consensus        93 ~k-~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~  171 (299)
T KOG1332|consen   93 TK-AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGP  171 (299)
T ss_pred             hh-hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCc
Confidence            11 115678999999999999853 26888999999999998664   233445789999999999985   4       


Q ss_pred             ----cEEEeeecCCCeEEEEEccCCC-ccceeecccccCCceEEEEecCCC----ceEEeeecCCcEEEEeCCCCCCCCC
Q psy2305         214 ----ILLFSGARKDCEIICWDLRNPG-CILHTFPRQVSTNQRVYFDLTSCS----NYLLSGNTNGDLSIWNVNTSNLPSS  284 (334)
Q Consensus       214 ----~~l~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~~~~~~  284 (334)
                          +.|++|+ .|..++||+..... .....+.+|  ...+..++|.|.-    .+++++++||++.||........  
T Consensus       172 ~~~~krlvSgG-cDn~VkiW~~~~~~w~~e~~l~~H--~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~--  246 (299)
T KOG1332|consen  172 AAKVKRLVSGG-CDNLVKIWKFDSDSWKLERTLEGH--KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP--  246 (299)
T ss_pred             ccccceeeccC-CccceeeeecCCcchhhhhhhhhc--chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc--
Confidence                5799999 99999999998732 222335655  7788889999964    58999999999999987632111  


Q ss_pred             CCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         285 PYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                             -....+......+..+.|  |+.|    .+|+.++.|..|..
T Consensus       247 -------wk~tll~~f~~~~w~vSW--S~sG----n~LaVs~GdNkvtl  282 (299)
T KOG1332|consen  247 -------WKKTLLEEFPDVVWRVSW--SLSG----NILAVSGGDNKVTL  282 (299)
T ss_pred             -------ccccccccCCcceEEEEE--eccc----cEEEEecCCcEEEE
Confidence                   112223334567999999  9999    99999999998864

>KOG0299|consensus

Probab=99.95  E-value=3.8e-26  Score=182.80  Aligned_cols=236  Identities=16%  Similarity=0.158  Sum_probs=188.0

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      -+.+++.||||+|||+|+.|..|.||+.++.+..              ..+. +|.+.|.+++|.-       ....|++
T Consensus       204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv--------------~~~~-ghr~~V~~L~fr~-------gt~~lys  261 (479)
T KOG0299|consen  204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHV--------------KVFK-GHRGAVSSLAFRK-------GTSELYS  261 (479)
T ss_pred             eeEEEEEcCCCcEEEecCCCceEEEecCcccchh--------------hccc-ccccceeeeeeec-------Cccceee
Confidence            4789999999999999999999999999999876              3444 5678899988843       4556899


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      ++.|+.|++|+++....+.++-+|..     .|..+....-++.+.+|. |+++++|++....+.      .+.++.+.+
T Consensus       262 ~s~Drsvkvw~~~~~s~vetlyGHqd-----~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql------ifrg~~~si  330 (479)
T KOG0299|consen  262 ASADRSVKVWSIDQLSYVETLYGHQD-----GVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL------IFRGGEGSI  330 (479)
T ss_pred             eecCCceEEEehhHhHHHHHHhCCcc-----ceeeechhcccceEEeccccceeEEEecccccee------eeeCCCCCe
Confidence            99999999999988888877776554     888888887777777776 999999999652222      467888899


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-cC-----------CCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GH-----------NGGITHLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~-----------~~~i~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                      -|++|-.+.  .+++|+.+|.|.+|++.+.+++.+.. .|           ...|++++..|...++++|+ .+|.+++|
T Consensus       331 dcv~~In~~--HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-~~G~vrLW  407 (479)
T KOG0299|consen  331 DCVAFINDE--HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-WSGCVRLW  407 (479)
T ss_pred             eeEEEeccc--ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-CCCceEEE
Confidence            999998776  69999999999999999888877653 12           22789999999999999999 89999999


Q ss_pred             EccCCCccceeecccccCCceEEEEecCCCceEEee-ecCCcEEEE
Q psy2305         230 DLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSG-NTNGDLSIW  274 (334)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iw  274 (334)
                      -+......+..+..-...+.|.+++|+++|+.+++| +....+--|
T Consensus       408 ~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  408 KIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             EecCCccccceeeecccccEEEEEEEccCCCEEEEeccccccccee
Confidence            998743333333333346788999999999966655 444444344

>KOG4328|consensus

Probab=99.95  E-value=6e-26  Score=181.61  Aligned_cols=289  Identities=16%  Similarity=0.168  Sum_probs=211.8

Q ss_pred             CceeEEEEcCCC--cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           2 DIEEDVDEAPDG--TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         2 d~V~~~~~sp~~--~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      ..|.+++|+|..  +++|+|..-|+|-+||+.+.+...           ..-.+...|..+|.++.|+|.      +...
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-----------d~v~~f~~hs~~Vs~l~F~P~------n~s~  249 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-----------DGVYLFTPHSGPVSGLKFSPA------NTSQ  249 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-----------CceEEeccCCccccceEecCC------Chhh
Confidence            368999999954  578899999999999996433210           112344457789999999774      4557


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      +++.+.||+|++-|++.+.....+......   ..+.++.|+.+...++.+. -|...+||+++.+....    .+.-|+
T Consensus       250 i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~---~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~----~~~lh~  322 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNISEEVLSLDTDN---IWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE----NLRLHK  322 (498)
T ss_pred             eeeeccCceeeeeeecchhhHHHhhcCccc---eeeeeccccCCCccEEEeecccceEEEEeecCCccch----hhhhhh
Confidence            888999999999999876543333321111   1678899999888777776 57999999999766666    467788


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC----ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEcc--
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR----PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR--  232 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~--  232 (334)
                      ..|++|+++|..+.+|++++.|++++|||+++-.    +.-....|...|.++.|||.+-.|++.+ .|..|+|||..  
T Consensus       323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IRv~dss~~  401 (498)
T KOG4328|consen  323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIRVFDSSCI  401 (498)
T ss_pred             cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-cCCceEEeecccc
Confidence            8999999999999899999999999999998632    2233356999999999999887799999 89999999984  


Q ss_pred             -CCCccceeecccccC---CceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc-ccce-
Q psy2305         233 -NPGCILHTFPRQVST---NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD-CTNG-  306 (334)
Q Consensus       233 -~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~-  306 (334)
                       ..-.+...+......   .......|.|+..++++|..-..|-|+|-..+            +.+..+..... .|.+ 
T Consensus       402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~------------q~v~el~~P~~~tI~~v  469 (498)
T KOG4328|consen  402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG------------QMVCELHDPESSTIPSV  469 (498)
T ss_pred             cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC------------EEeeeccCccccccccc
Confidence             213344444322111   22345689999999999999999999999887            54555443322 4444 


Q ss_pred             eeeccCCCcccceeeEEee-ecceeeee
Q psy2305         307 VRWKHHKFERDLLVADATC-SGQITNVK  333 (334)
Q Consensus       307 ~~~~~s~~~~~~~~~l~t~-~~d~~i~~  333 (334)
                      ..|  +|-+    ..+++| +.-|.|++
T Consensus       470 n~~--HP~~----~~~~aG~~s~Gki~v  491 (498)
T KOG4328|consen  470 NEF--HPMR----DTLAAGGNSSGKIYV  491 (498)
T ss_pred             eee--cccc----cceeccCCccceEEE
Confidence            468  9988    645554 55666654

>KOG2106|consensus

Probab=99.95  E-value=1.4e-24  Score=175.96  Aligned_cols=276  Identities=12%  Similarity=0.142  Sum_probs=209.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      |.|....|.|.+..|+.....+.+..|+++++....           ....+...+..-|.+++|       .++|+ ++
T Consensus       201 e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k-----------~~~~fek~ekk~Vl~v~F-------~engd-vi  261 (626)
T KOG2106|consen  201 EVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVK-----------RQGIFEKREKKFVLCVTF-------LENGD-VI  261 (626)
T ss_pred             ceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEE-----------EeeccccccceEEEEEEE-------cCCCC-EE
Confidence            567889999976655555556889999999887652           223455555567877777       66776 78


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeee----------
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSR----------  150 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~----------  150 (334)
                      +|..+|.|.||+..+.+..+....|..     .|.+++...+|.+|- |. |..|..||-+-  +..+..          
T Consensus       262 TgDS~G~i~Iw~~~~~~~~k~~~aH~g-----gv~~L~~lr~GtllS-GgKDRki~~Wd~~y--~k~r~~elPe~~G~iR  333 (626)
T KOG2106|consen  262 TGDSGGNILIWSKGTNRISKQVHAHDG-----GVFSLCMLRDGTLLS-GGKDRKIILWDDNY--RKLRETELPEQFGPIR  333 (626)
T ss_pred             eecCCceEEEEeCCCceEEeEeeecCC-----ceEEEEEecCccEee-cCccceEEeccccc--cccccccCchhcCCee
Confidence            999999999999877776666555443     999999999998776 76 99999999331  111110          


Q ss_pred             ---------------------------cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCC
Q psy2305         151 ---------------------------NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG  203 (334)
Q Consensus       151 ---------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  203 (334)
                                                 .+...+|......++.+|+.+ ++++++.|+.+++|+  ..+++.+.. -..+
T Consensus       334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~  409 (626)
T KOG2106|consen  334 TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN--DHKLEWTKI-IEDP  409 (626)
T ss_pred             EEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc--CCceeEEEE-ecCc
Confidence                                       003456777888999999998 999999999999999  455554443 4567


Q ss_pred             eEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCC
Q psy2305         204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPS  283 (334)
Q Consensus       204 i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  283 (334)
                      +.++.|+|.| .++.|. ..|...+.|.++ ...+. +.  ....++..+.|+|+|.+||.|+.|+.|+||.+....   
T Consensus       410 ~~~~~fhpsg-~va~Gt-~~G~w~V~d~e~-~~lv~-~~--~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g---  480 (626)
T KOG2106|consen  410 AECADFHPSG-VVAVGT-ATGRWFVLDTET-QDLVT-IH--TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG---  480 (626)
T ss_pred             eeEeeccCcc-eEEEee-ccceEEEEeccc-ceeEE-EE--ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC---
Confidence            8899999999 999999 899999999986 44333 22  236778889999999999999999999999988763   


Q ss_pred             CCCcccccccccee-cccccccceeeeccCCCcccceeeEEeeecceee
Q psy2305         284 SPYEESVQEPLYKF-SAHQDCTNGVRWKHHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       284 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i  331 (334)
                              ...... +.+..+|+.+.|  ++|+    ++|.+-+.|-.+
T Consensus       481 --------~~y~r~~k~~gs~ithLDw--S~Ds----~~~~~~S~d~ei  515 (626)
T KOG2106|consen  481 --------RKYSRVGKCSGSPITHLDW--SSDS----QFLVSNSGDYEI  515 (626)
T ss_pred             --------cEEEEeeeecCceeEEeee--cCCC----ceEEeccCceEE
Confidence                    223223 223468999999  9999    999998887543

>KOG0646|consensus

Probab=99.95  E-value=1.9e-25  Score=179.11  Aligned_cols=235  Identities=15%  Similarity=0.157  Sum_probs=187.1

Q ss_pred             CcEEEEeeC-CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          77 TSYFLCSSM-YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        77 ~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      +.+++++.. ...+.+|.+..........     -.+++|.+++-+|+|.+|+.|. .+.+++|.+.+ |..+.    .+
T Consensus        50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~-----v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~----v~  119 (476)
T KOG0646|consen   50 NEYLLSAQLKRPLLHVWEILKKDQVVQYI-----VLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLN----VL  119 (476)
T ss_pred             hhheeeecccCccccccccCchhhhhhhc-----ccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHH----HH
Confidence            456666643 4478999986554433111     1122799999999999999997 99999999998 77776    57


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECC---------CCCceEeeccCCCCeEEEEEccCC--cEEEeeecCC
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS---------DGRPLFFLKGHNGGITHLEFSSNG--ILLFSGARKD  223 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~d  223 (334)
                      ..|-..|+|+.|+-||. +|++|+.||.|.+|++-         +.++...+..|.-+|+.+...+.|  .+|++++ .|
T Consensus       120 ~aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D  197 (476)
T KOG0646|consen  120 SAHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-ED  197 (476)
T ss_pred             HhhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CC
Confidence            89999999999999999 99999999999999872         347888899999999999987653  5899999 99


Q ss_pred             CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCC----CCccccccccceecc
Q psy2305         224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSS----PYEESVQEPLYKFSA  299 (334)
Q Consensus       224 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~  299 (334)
                      .++++||+.. +..+..+.   .+..+.+++.+|.++.+++|+.+|.|.+.++........    ...+.-...+..+.+
T Consensus       198 ~t~k~wdlS~-g~LLlti~---fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G  273 (476)
T KOG0646|consen  198 RTIKLWDLSL-GVLLLTIT---FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG  273 (476)
T ss_pred             ceEEEEEecc-ceeeEEEe---cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence            9999999998 77666665   366788899999999999999999999988765421100    000111244566788


Q ss_pred             ccc--ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         300 HQD--CTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       300 ~~~--~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |.+  .|++++.  +-||    ..|++|+.||.+++
T Consensus       274 h~~~~~ITcLai--s~Dg----tlLlSGd~dg~Vcv  303 (476)
T KOG0646|consen  274 HENESAITCLAI--STDG----TLLLSGDEDGKVCV  303 (476)
T ss_pred             ccCCcceeEEEE--ecCc----cEEEeeCCCCCEEE
Confidence            988  9999999  9999    99999999999986

>KOG0270|consensus

Probab=99.94  E-value=2.2e-25  Score=177.80  Aligned_cols=250  Identities=16%  Similarity=0.229  Sum_probs=181.6

Q ss_pred             CCcEEEEeeCCCeEEEEECCCCCceee---eeCC-CCCC--CCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC
Q psy2305          12 DGTCLLTNSNDNHLRTFDLPSELHCKS---VWRP-SNQR--PKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM   85 (334)
Q Consensus        12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~---~~~~-~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~   85 (334)
                      -|+|+|.|+.|..|.|||+.-......   +... .+..  ..-......+|...|..+.|+-      -..++||+|+.
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~------~~~nVLaSgsa  264 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR------NFRNVLASGSA  264 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc------ccceeEEecCC
Confidence            367999999999999999874332210   0000 0000  0001111224666777777742      13567999999


Q ss_pred             CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC-CEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEE
Q psy2305          86 YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSA  163 (334)
Q Consensus        86 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~  163 (334)
                      |.+|++||+.++++..++..+..     .|.++.|+|.. ..|++|+ |++|.+.|.+.+...-.     .-...+.|-.
T Consensus       265 D~TV~lWD~~~g~p~~s~~~~~k-----~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~-----~wk~~g~VEk  334 (463)
T KOG0270|consen  265 DKTVKLWDVDTGKPKSSITHHGK-----KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK-----EWKFDGEVEK  334 (463)
T ss_pred             CceEEEEEcCCCCcceehhhcCC-----ceeEEEecCCCceEEEeccccceEEeeeccCccccCc-----eEEeccceEE
Confidence            99999999999999999886554     89999999975 5677888 99999999995333222     2234678999


Q ss_pred             EEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCCc-EEEeeecCCCeEEEEEccCCCccceee
Q psy2305         164 IAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGI-LLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                      ++|.|...+.+++++.||+|+-+|+|+. +++.+++.|.++|.++++++.-. +|++++ .|+.+++|++.. ..+....
T Consensus       335 v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s-~d~~Vklw~~~~-~~~~~v~  412 (463)
T KOG0270|consen  335 VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS-TDKVVKLWKFDV-DSPKSVK  412 (463)
T ss_pred             EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc-ccceEEEEeecC-CCCcccc
Confidence            9999999888899999999999999886 89999999999999999988544 677888 899999999985 3322222


Q ss_pred             cccccCCceEEEEecCCCc-eEEeeecCCcEEEEeCCCC
Q psy2305         242 PRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       242 ~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~  279 (334)
                      .....-+...++++.|+-. +++.|+..+.++|||+.+.
T Consensus       413 ~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  413 EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             cccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            2111122345667777654 5677888888999999886

>KOG0268|consensus

Probab=99.94  E-value=1.1e-26  Score=180.64  Aligned_cols=239  Identities=15%  Similarity=0.133  Sum_probs=194.2

Q ss_pred             cceeeeeeeceeEEEEEEecccceecCCC-cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEE
Q psy2305          49 LNYTLKIKEGGIIYDYVWYPKTSSIDGFT-SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI  127 (334)
Q Consensus        49 ~~~~~~~~~~~~v~~~~~~~~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  127 (334)
                      ++..+. +|...|.+++-+|       .. ..+++|+.||.|++||+....+...++.|..     .|..+++.. +..+
T Consensus        58 Fv~~L~-gHrdGV~~lakhp-------~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-----~V~Gi~v~~-~~~~  123 (433)
T KOG0268|consen   58 FVGSLD-GHRDGVSCLAKHP-------NKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEG-----LVRGICVTQ-TSFF  123 (433)
T ss_pred             chhhcc-ccccccchhhcCc-------chhhhhhccccCceEEEEehhhhhhhheeecccC-----ceeeEEecc-cceE
Confidence            334453 4567788877754       43 5699999999999999999999999998776     899999987 5556


Q ss_pred             EEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEE
Q psy2305         128 YAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHL  207 (334)
Q Consensus       128 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  207 (334)
                      .+|.|.+|+.|.++  +....     .......+..+.-+..+. .++|+++  .|.|||.+-..++..+.-....|.++
T Consensus       124 tvgdDKtvK~wk~~--~~p~~-----tilg~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~sv  193 (433)
T KOG0268|consen  124 TVGDDKTVKQWKID--GPPLH-----TILGKSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRDNPVSSMSWGADSISSV  193 (433)
T ss_pred             EecCCcceeeeecc--CCcce-----eeeccccccccccccccc-cccccCc--eeeecccccCCccceeecCCCceeEE
Confidence            66679999999998  43333     223356677887777777 8888864  69999998889999998888899999


Q ss_pred             EEccCCc-EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCC
Q psy2305         208 EFSSNGI-LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPY  286 (334)
Q Consensus       208 ~~~~~~~-~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  286 (334)
                      .|+|... .|++++ .|+.|.+||++. ..+++.+.-.   .....++|+|.+--+++|++|..++.||++...      
T Consensus       194 kfNpvETsILas~~-sDrsIvLyD~R~-~~Pl~KVi~~---mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~------  262 (433)
T KOG0268|consen  194 KFNPVETSILASCA-SDRSIVLYDLRQ-ASPLKKVILT---MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS------  262 (433)
T ss_pred             ecCCCcchheeeec-cCCceEEEeccc-CCccceeeee---ccccceecCccccceeeccccccceehhhhhhc------
Confidence            9999766 556666 899999999998 6666665532   233457899988888999999999999999875      


Q ss_pred             ccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         287 EESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       287 ~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                           +++....+|...|.++.|  +|.|    +-+++||.|.+|.|
T Consensus       263 -----~p~~v~~dhvsAV~dVdf--sptG----~EfvsgsyDksIRI  298 (433)
T KOG0268|consen  263 -----RPLNVHKDHVSAVMDVDF--SPTG----QEFVSGSYDKSIRI  298 (433)
T ss_pred             -----ccchhhcccceeEEEecc--CCCc----chhccccccceEEE
Confidence                 788899999999999999  9999    99999999999987

>KOG1007|consensus

Probab=99.94  E-value=1.5e-24  Score=164.25  Aligned_cols=294  Identities=14%  Similarity=0.164  Sum_probs=207.1

Q ss_pred             CcEEEEee----CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC--
Q psy2305          13 GTCLLTNS----NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY--   86 (334)
Q Consensus        13 ~~~l~~~~----~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d--   86 (334)
                      .-.+++|.    .|+.|.+.+++.....            +......|+.+.|+.++-+|.      +.++|+++..+  
T Consensus        26 ~icFlvgTnslK~dNqVhll~~d~e~s~------------l~skvf~h~agEvw~las~P~------d~~ilaT~yn~~s   87 (370)
T KOG1007|consen   26 HICFLVGTNSLKEDNQVHLLRLDSEGSE------------LLSKVFFHHAGEVWDLASSPF------DQRILATVYNDTS   87 (370)
T ss_pred             ceEEEEeccccCCcceeEEEEecCccch------------hhhhhhhcCCcceehhhcCCC------CCceEEEEEeccC
Confidence            34566665    5688888887765543            223444567789999888664      56677776542  


Q ss_pred             -----CcEEEEeCCCCeee---EEEcCcc--ccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecc-ccc
Q psy2305          87 -----APIHLWDSVGGEIK---ATYRPYN--QVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL-KPW  155 (334)
Q Consensus        87 -----~~i~iwd~~~~~~~---~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~-~~~  155 (334)
                           ..+.||.+......   .+++...  .....+.|.|+.|.|++..+++-.|..|.+|++....+.....+. ...
T Consensus        88 ~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~  167 (370)
T KOG1007|consen   88 DSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESA  167 (370)
T ss_pred             CCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccc
Confidence                 24679987643211   1111111  112233789999999999999888999999999873332222111 122


Q ss_pred             ccccceEEEEEcC--CCCcEEEEeecCCeEEEEECCCCCceEee-ccCCCCeEEEEEccCCc-EEEeeecCCCeEEEEEc
Q psy2305         156 FRKNIVSAIAINP--VHPDICALGTYSKIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGI-LLFSGARKDCEIICWDL  231 (334)
Q Consensus       156 ~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~iwd~  231 (334)
                      ++....++-+|+|  ++. .+++. .|+++..||+++.++...+ .+|...+..+.|+|+.+ +|++++ .||.|++||.
T Consensus       168 e~~~~ftsg~WspHHdgn-qv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g-DdgyvriWD~  244 (370)
T KOG1007|consen  168 EMRHSFTSGAWSPHHDGN-QVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG-DDGYVRIWDT  244 (370)
T ss_pred             cccceecccccCCCCccc-eEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC-CCccEEEEec
Confidence            3566788889998  455 66654 5899999999998776666 56888899999999876 567777 8999999999


Q ss_pred             cCCCccceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCCCC----------CCCCcc--cc-----ccc
Q psy2305         232 RNPGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSNLP----------SSPYEE--SV-----QEP  293 (334)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~--~~-----~~~  293 (334)
                      +....+++++.+|  ..+++++.|+|.. +++++|+.|..|.+|...+-...          ..++.+  ++     -..
T Consensus       245 R~tk~pv~el~~H--sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~  322 (370)
T KOG1007|consen  245 RKTKFPVQELPGH--SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQ  322 (370)
T ss_pred             cCCCccccccCCC--ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccc
Confidence            9888888888887  7789999999964 67789999999999986543211          011111  11     223


Q ss_pred             cceecccccccceeeeccCCCcccceeeEEeeecceeeeeC
Q psy2305         294 LYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVKQ  334 (334)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~~  334 (334)
                      +.++..|++.|++++|  +.-.|   -.+|+-|.||++.|+
T Consensus       323 l~tydehEDSVY~~aW--SsadP---WiFASLSYDGRviIs  358 (370)
T KOG1007|consen  323 LETYDEHEDSVYALAW--SSADP---WIFASLSYDGRVIIS  358 (370)
T ss_pred             cccccccccceEEEee--ccCCC---eeEEEeccCceEEee
Confidence            4567889999999999  87663   568888999999874

>KOG2055|consensus

Probab=99.94  E-value=2.8e-25  Score=178.05  Aligned_cols=244  Identities=16%  Similarity=0.221  Sum_probs=187.7

Q ss_pred             ceeEEEEcCCCc-EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGT-CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +|.+.+|.|+|. .+++++....++.||+.+.+...            .....+.+...+.       ...++|++++|+
T Consensus       259 Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k------------~~~~~g~e~~~~e-------~FeVShd~~fia  319 (514)
T KOG2055|consen  259 PIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK------------LKPPYGVEEKSME-------RFEVSHDSNFIA  319 (514)
T ss_pred             ccceeeecCCCceEEEecccceEEEEeecccccccc------------ccCCCCcccchhh-------eeEecCCCCeEE
Confidence            688999999999 89999999999999999887651            1111121211221       234588999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-eCCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      ..+..|.|.+....+++.+..++..+      .|..++|+.|++.|++. ++|.|.+||+++. ..+..   ......-.
T Consensus       320 ~~G~~G~I~lLhakT~eli~s~KieG------~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~r---f~D~G~v~  389 (514)
T KOG2055|consen  320 IAGNNGHIHLLHAKTKELITSFKIEG------VVSDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHR---FVDDGSVH  389 (514)
T ss_pred             EcccCceEEeehhhhhhhhheeeecc------EEeeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEE---EeecCccc
Confidence            99999999999999999998887654      79999999999888755 5999999999963 33332   11111223


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCC------CCceEeeccCCCCeEEEEEccCCcEEEeeec-CCCeEEEEEccC
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSD------GRPLFFLKGHNGGITHLEFSSNGILLFSGAR-KDCEIICWDLRN  233 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d~~i~iwd~~~  233 (334)
                      -++++.++++. +||+|+..|.|.|||.++      .+++..+..-...|++++|+|+++.|+.+++ ....+++-.+.+
T Consensus       390 gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS  468 (514)
T KOG2055|consen  390 GTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS  468 (514)
T ss_pred             eeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence            45778889999 999999999999999753      4677777777788999999999999988874 356789988876


Q ss_pred             CCccceeeccc-ccCCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305         234 PGCILHTFPRQ-VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN  277 (334)
Q Consensus       234 ~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  277 (334)
                       ......+... ..-+.+.+++|||.|.+||.|..+|++.+|.+.
T Consensus       469 -~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  469 -CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             -eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence             3333333322 123568899999999999999999999999875

>KOG0300|consensus

Probab=99.94  E-value=2.5e-25  Score=170.69  Aligned_cols=242  Identities=16%  Similarity=0.194  Sum_probs=194.2

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCc
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSE  134 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~  134 (334)
                      +|...|+.++-       .....++.+++.|.+.+||.+++|.++..+.+|..     .|++++|++.+.++++++ |++
T Consensus       146 GHkDGiW~Vaa-------~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G-----SVNsikfh~s~~L~lTaSGD~t  213 (481)
T KOG0300|consen  146 GHKDGIWHVAA-------DSTQPICGTASADHTARIWSLESGACLATYTGHTG-----SVNSIKFHNSGLLLLTASGDET  213 (481)
T ss_pred             ccccceeeehh-------hcCCcceeecccccceeEEeeccccceeeeccccc-----ceeeEEeccccceEEEccCCcc
Confidence            34566776654       33445788999999999999999999999998766     899999999999999987 999


Q ss_pred             EEEEE------cCCC-----------------------------CCeeeeecccccccccceEEEEEcCCCCcEEEEeec
Q psy2305         135 VKIFS------TDRP-----------------------------GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY  179 (334)
Q Consensus       135 i~i~d------~~~~-----------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (334)
                      ..||.      +..+                             +..+......+.+|...|.+..|-..|+ .+++++.
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSW  292 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASW  292 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeec
Confidence            99997      2210                             0011111115678999999999999999 9999999


Q ss_pred             CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCC
Q psy2305         180 SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS  259 (334)
Q Consensus       180 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  259 (334)
                      |.+..+||+++++++..+.+|....+.++-+|..+++++.+ .|.+.++||++..-..+..|.+|  ...+++..|..+ 
T Consensus       293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsS-rDtTFRLWDFReaI~sV~VFQGH--tdtVTS~vF~~d-  368 (481)
T KOG0300|consen  293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSS-RDTTFRLWDFREAIQSVAVFQGH--TDTVTSVVFNTD-  368 (481)
T ss_pred             cccceeeeeccCceeccccCcchhccccccCCcceEEEEec-cCceeEeccchhhcceeeeeccc--ccceeEEEEecC-
Confidence            99999999999999999999999999999999999999999 79999999999655667788887  567788888765 


Q ss_pred             ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         260 NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       260 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      ..+++|+.|.+|++||+++..           .++.++.. ..+++.++.  +..+    ++||.--++..|.
T Consensus       369 d~vVSgSDDrTvKvWdLrNMR-----------splATIRt-dS~~NRvav--s~g~----~iIAiPhDNRqvR  423 (481)
T KOG0300|consen  369 DRVVSGSDDRTVKVWDLRNMR-----------SPLATIRT-DSPANRVAV--SKGH----PIIAIPHDNRQVR  423 (481)
T ss_pred             CceeecCCCceEEEeeecccc-----------Ccceeeec-CCccceeEe--ecCC----ceEEeccCCceEE
Confidence            567899999999999999875           45555553 456777787  7666    6676666655554

>KOG1063|consensus

Probab=99.94  E-value=2.1e-24  Score=181.05  Aligned_cols=291  Identities=16%  Similarity=0.187  Sum_probs=214.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeee----ceeEEEEEEecccceecCCC
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKE----GGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~s~~~   77 (334)
                      |.|+++.|+|.+..|++++.|.++.+|...+..-+            .....+.++    ....++..|       +|++
T Consensus       268 DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGi------------Wv~~vRlGe~gg~a~GF~g~lw-------~~n~  328 (764)
T KOG1063|consen  268 DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGI------------WVDVVRLGEVGGSAGGFWGGLW-------SPNS  328 (764)
T ss_pred             cceEEEEEccchhhheecccCcceEEEecCCccce------------EEEEEEeecccccccceeeEEE-------cCCC
Confidence            67999999999999999999999999998766322            112222221    223555555       7789


Q ss_pred             cEEEEeeCCCcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccc
Q psy2305          78 SYFLCSSMYAPIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      +.+++-++.|-.++|..+. .......-..+|.+   .|..++|+|.|.+|++.+ |.+-++|-.-........+. ..+
T Consensus       329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~---~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia-RPQ  404 (764)
T KOG1063|consen  329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVD---GVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA-RPQ  404 (764)
T ss_pred             CEEEEecccCcEEEEeccCccceeeccccccccc---cceeeeecCCCCEEEEeccccceeeecccccccceeeec-ccc
Confidence            9999999999999998332 22222222223433   899999999999999887 99999987652122211111 346


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC--------------------------------CCc----------
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD--------------------------------GRP----------  193 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------------------------------~~~----------  193 (334)
                      .|...++|+++-+... .+++|.+...+++|+...                                .+.          
T Consensus       405 iHGyDl~c~~~vn~~~-~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~  483 (764)
T KOG1063|consen  405 IHGYDLTCLSFVNEDL-QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGG  483 (764)
T ss_pred             cccccceeeehccCCc-eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccc
Confidence            6888899999988544 788888888899986421                                000          


Q ss_pred             ----------------------------------eEeeccCCCCeEEEEEccCCcEEEeeecC----CCeEEEEEccCCC
Q psy2305         194 ----------------------------------LFFLKGHNGGITHLEFSSNGILLFSGARK----DCEIICWDLRNPG  235 (334)
Q Consensus       194 ----------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----d~~i~iwd~~~~~  235 (334)
                                                        ++.+.||.-.|++++.+|+|++++++++.    -..|++|+..+ -
T Consensus       484 ~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~-W  562 (764)
T KOG1063|consen  484 EAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN-W  562 (764)
T ss_pred             ccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-h
Confidence                                              01234677889999999999999999831    23599999987 5


Q ss_pred             ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      .....+..|  .-.++.++|||||++|++.+.|+++.+|+.......        .......+.|..-|+++.|  +|++
T Consensus       563 ~~~~~L~~H--sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~--------e~~fa~~k~HtRIIWdcsW--~pde  630 (764)
T KOG1063|consen  563 LQVQELEGH--SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD--------EFRFACLKAHTRIIWDCSW--SPDE  630 (764)
T ss_pred             hhhheeccc--ceEEEEEEECCCCcEEEEeecCceEEeeeeecccch--------hhhhccccccceEEEEccc--Cccc
Confidence            556677777  778999999999999999999999999998654221        0112347789999999999  9999


Q ss_pred             ccceeeEEeeecceeeee
Q psy2305         316 RDLLVADATCSGQITNVK  333 (334)
Q Consensus       316 ~~~~~~l~t~~~d~~i~~  333 (334)
                          .++||+|.|++|++
T Consensus       631 ----~~FaTaSRDK~VkV  644 (764)
T KOG1063|consen  631 ----KYFATASRDKKVKV  644 (764)
T ss_pred             ----ceeEEecCCceEEE
Confidence                99999999999986

>KOG0267|consensus

Probab=99.94  E-value=7.6e-27  Score=196.42  Aligned_cols=229  Identities=18%  Similarity=0.231  Sum_probs=193.1

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      |.++..-..++.+++|+.|..+.+|.+.....+              ..+. .|..+|.++.|       +++..+|++|
T Consensus        31 v~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i--------------~S~~-~hespIeSl~f-------~~~E~Llaag   88 (825)
T KOG0267|consen   31 VGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI--------------TSLT-GHESPIESLTF-------DTSERLLAAG   88 (825)
T ss_pred             hceeeeeccceeeccCCCceeeccccccCCchh--------------heee-ccCCcceeeec-------Ccchhhhccc
Confidence            445555456788999999999999998876654              1233 46688988777       6688899999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      +.+|+|++||+++++.++++.+|..     .+.++.|+|-+.+.+.|+ |+.+++||++..+ ...    .+.+|...+.
T Consensus        89 sasgtiK~wDleeAk~vrtLtgh~~-----~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~----~~~s~~~vv~  158 (825)
T KOG0267|consen   89 SASGTIKVWDLEEAKIVRTLTGHLL-----NITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSH----TYKSHTRVVD  158 (825)
T ss_pred             ccCCceeeeehhhhhhhhhhhcccc-----CcceeeeccceEEeccccccccceehhhhccC-cee----eecCCcceeE
Confidence            9999999999999999998888665     789999999999999888 9999999999523 333    4677999999


Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeec
Q psy2305         163 AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP  242 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~  242 (334)
                      .+.|+|+|+ +++.|++|..+++||+..|+.+..|..|.+.+.++.|+|..-+++.|+ .|+++++||+++ -..+....
T Consensus       159 ~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv~f~dlet-fe~I~s~~  235 (825)
T KOG0267|consen  159 VLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTVRFWDLET-FEVISSGK  235 (825)
T ss_pred             EEeecCCCc-eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC-CCceeeeeccce-eEEeeccC
Confidence            999999999 999999999999999999999999999999999999999999999999 999999999997 44444443


Q ss_pred             ccccCCceEEEEecCCCceEEeeecCC
Q psy2305         243 RQVSTNQRVYFDLTSCSNYLLSGNTNG  269 (334)
Q Consensus       243 ~~~~~~~~~~~~~s~~~~~l~~~~~dg  269 (334)
                      ..  ...+.+..|+|+++.+++|....
T Consensus       236 ~~--~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  236 PE--TDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             Cc--cCCceeeeecCCceeeecCchhh
Confidence            33  56688899999999999886653

>KOG0302|consensus

Probab=99.94  E-value=9.8e-25  Score=170.78  Aligned_cols=253  Identities=16%  Similarity=0.198  Sum_probs=183.2

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCC----------------CeeeEEEcCccccccccceeEEEE
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVG----------------GEIKATYRPYNQVDEVTHAYSLAF  120 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~~~~~~v~~~~~  120 (334)
                      |.+.++.+.-.+     -++..+.++-+..|.|.||++..                .+.+.++..|..     .=+.++|
T Consensus       150 h~g~~NRvr~~~-----~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-----EGy~LdW  219 (440)
T KOG0302|consen  150 HYGGINRVRVSR-----LGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-----EGYGLDW  219 (440)
T ss_pred             cccccceeeecc-----cCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-----cceeeec
Confidence            335555555433     12445666678889999999742                123344444433     4479999


Q ss_pred             cCCC-CEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC--ceEe
Q psy2305         121 SLDG-NKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR--PLFF  196 (334)
Q Consensus       121 ~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~  196 (334)
                      ||-. ..|++|. -+.|++|...+..-.....  .+.+|+..|-.++|+|.....|++|+-||+|+|||+|.+.  ....
T Consensus       220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~--Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~  297 (440)
T KOG0302|consen  220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR--PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS  297 (440)
T ss_pred             ccccccccccCccccceEeeeeccCceeecCc--cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE
Confidence            9942 2366776 7899999998744344333  4677999999999999988899999999999999999872  2223


Q ss_pred             eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC--CCccceeecccccCCceEEEEecCCC-ceEEeeecCCcEEE
Q psy2305         197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN--PGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSI  273 (334)
Q Consensus       197 ~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~i  273 (334)
                      .+.|.+.|+-+.|+.+..+|++|+ .||+++|||++.  .++++..++.|  ..+++++.|+|.. ..|++++.|.+|.|
T Consensus       298 ~kAh~sDVNVISWnr~~~lLasG~-DdGt~~iwDLR~~~~~~pVA~fk~H--k~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  298 TKAHNSDVNVISWNRREPLLASGG-DDGTLSIWDLRQFKSGQPVATFKYH--KAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             eeccCCceeeEEccCCcceeeecC-CCceEEEEEhhhccCCCcceeEEec--cCCeeEEEeccccCceEEeccCCCcEEE
Confidence            388999999999999888999999 999999999995  34677788877  7789999999954 56778889999999


Q ss_pred             EeCCCCCCC---CCCCcc----ccccccceecccccccceeeeccCCCcccceeeEEeeeccee
Q psy2305         274 WNVNTSNLP---SSPYEE----SVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQIT  330 (334)
Q Consensus       274 wd~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~  330 (334)
                      ||+......   ..++.+    -+++++....+ ...+..+.|  ++..+   .+|++.+.||.
T Consensus       375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhW--H~QiP---G~lvsTa~dGf  432 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHW--HRQIP---GLLVSTAIDGF  432 (440)
T ss_pred             EEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhhhee--ccCCC---CeEEEecccce
Confidence            998764321   111111    12233333222 347899999  88765   68888888885

>KOG1408|consensus

Probab=99.94  E-value=3.7e-25  Score=186.46  Aligned_cols=246  Identities=15%  Similarity=0.204  Sum_probs=194.8

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .+++++.||+|++||+|..-|+++||++...+..              ..+. .|...|.++.|+-.    .-..++||+
T Consensus       461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~--------------~~~e-AHesEilcLeyS~p----~~~~kLLAS  521 (1080)
T KOG1408|consen  461 GFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT--------------CFME-AHESEILCLEYSFP----VLTNKLLAS  521 (1080)
T ss_pred             ceEEEEECCCcceecccCccCceEEEEehhhhhh--------------hhee-cccceeEEEeecCc----hhhhHhhhh
Confidence            4899999999999999999999999999987765              2333 46688999988531    113478999


Q ss_pred             eeCCCcEEEEeCCCC-eeeEEEcCccccccccceeEEEEcCCC--CEEEEee-CCcEEEEEcCCCCCeeeeecc-ccccc
Q psy2305          83 SSMYAPIHLWDSVGG-EIKATYRPYNQVDEVTHAYSLAFSLDG--NKIYAGF-LSEVKIFSTDRPGRECVSRNL-KPWFR  157 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~  157 (334)
                      +++|..|.++|+... .++.++..|..     .|+++.|.-.|  ..+++++ |..|.+ +...........+. .....
T Consensus       522 asrdRlIHV~Dv~rny~l~qtld~HSs-----sITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~  595 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDLVQTLDGHSS-----SITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLS  595 (1080)
T ss_pred             ccCCceEEEEecccccchhhhhccccc-----ceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccc
Confidence            999999999998654 34556665444     89999998877  5566554 876654 33321111111000 11222


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc---CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG---HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP  234 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~  234 (334)
                      +..+..++..|..+ ++++++.|+.|+|||+++++..+.|++   |++..-.+...|.|.||++.+ .|+++.++|+.+ 
T Consensus       596 ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc-sdktl~~~Df~s-  672 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC-SDKTLCFVDFVS-  672 (1080)
T ss_pred             cceEEEeeeCCCcc-eEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee-cCCceEEEEecc-
Confidence            45688999999999 999999999999999999999999964   667788899999999999999 899999999998 


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      ++++.+..+|  ...++.+.|.+|-+.|++.+.||.|.||.+..
T Consensus       673 gEcvA~m~GH--sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  673 GECVAQMTGH--SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             chhhhhhcCc--chheeeeeecccchhheeecCCceEEEEECch
Confidence            8888888887  66788999999999999999999999999875

>KOG0307|consensus

Probab=99.94  E-value=3.3e-26  Score=201.85  Aligned_cols=289  Identities=17%  Similarity=0.189  Sum_probs=210.4

Q ss_pred             EEEEcCCCc-EEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceec
Q psy2305           6 DVDEAPDGT-CLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSID   74 (334)
Q Consensus         6 ~~~~sp~~~-~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s   74 (334)
                      .++|+|++. ++|+|.          .+.++.||.+......          .++...-.......-+.++|.+..-  .
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~----------~dlk~~~s~~s~~rF~kL~W~~~g~--~   78 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDES----------SDLKPVGSLQSSNRFNKLAWGSYGS--H   78 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcc----------ccccccccccccccceeeeecccCC--C
Confidence            578999987 666653          2445555554422211          0011111222345677888854210  0


Q ss_pred             CCCcEEEEeeCCCcEEEEeCCC---Ce---eeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCe
Q psy2305          75 GFTSYFLCSSMYAPIHLWDSVG---GE---IKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRE  146 (334)
Q Consensus        75 ~~~~~l~~~~~d~~i~iwd~~~---~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~  146 (334)
                      +. -+|+.|..||.|.+||...   +.   .+.....|.     +.|..+.|++... .|++|. +|.|.|||+......
T Consensus        79 ~~-GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~-----G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP  152 (1049)
T KOG0307|consen   79 SH-GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHT-----GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP  152 (1049)
T ss_pred             cc-ceeeccccCCceEEecchhhccCcchHHHhhhcccC-----CceeeeeccccCCceeeccCCCCcEEEeccCCcCCC
Confidence            11 2588889999999999765   22   223333333     3899999999865 888887 999999999864333


Q ss_pred             eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCC--CeEEEEEccCCc-EEEeeecCC
Q psy2305         147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNG--GITHLEFSSNGI-LLFSGARKD  223 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~l~~~~~~d  223 (334)
                      ...   ........|.+++|+..-.++|++++.+|.+.|||++..+++..+..+.+  .+..++|+|+.. .|++++..|
T Consensus       153 ~~~---~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd  229 (1049)
T KOG0307|consen  153 FTP---GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD  229 (1049)
T ss_pred             CCC---CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCC
Confidence            221   12234678999999988777899999999999999999988887765544  477899999864 566666223


Q ss_pred             --CeEEEEEccCCCccceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccc
Q psy2305         224 --CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH  300 (334)
Q Consensus       224 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  300 (334)
                        ..|.+||+|....+++.+..|  ...++++.|++.+ ++|++++.|++|.+|+.+++            +.+..+...
T Consensus       230 ~~PviqlWDlR~assP~k~~~~H--~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg------------Evl~~~p~~  295 (1049)
T KOG0307|consen  230 SAPVIQLWDLRFASSPLKILEGH--QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG------------EVLGELPAQ  295 (1049)
T ss_pred             CCceeEeecccccCCchhhhccc--ccceeeeccCCCCchhhhcccCCCCeeEecCCCc------------eEeeecCCC
Confidence              469999999877888888777  6678999999977 89999999999999999998            788888887


Q ss_pred             ccccceeeeccCCCcccceeeEEeeecceeeeeC
Q psy2305         301 QDCTNGVRWKHHKFERDLLVADATCSGQITNVKQ  334 (334)
Q Consensus       301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~~  334 (334)
                      .+.+..+.|  .|..+   ..++.++-||.|-|+
T Consensus       296 ~nW~fdv~w--~pr~P---~~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  296 GNWCFDVQW--CPRNP---SVMAAASFDGKISIY  324 (1049)
T ss_pred             Ccceeeeee--cCCCc---chhhhheeccceeee
Confidence            889999999  88883   488999999998774

>KOG4378|consensus

Probab=99.94  E-value=5.6e-25  Score=178.00  Aligned_cols=262  Identities=14%  Similarity=0.202  Sum_probs=198.2

Q ss_pred             ceeEEEEcCCCc-EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGT-CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .+.+++|+.... .+++.+.|..+++|.-......             ++.+....+..-.       |++......+++
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~-------------Vp~~~k~~gd~~~-------Cv~~~s~S~y~~   95 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE-------------VPRVRKLTGDNAF-------CVACASQSLYEI   95 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCc-------------cceeeccccchHH-------HHhhhhcceeee
Confidence            367888887664 2334457888999976544211             1122221222211       122233457999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc-ccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF-RKN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-~~~  159 (334)
                      +|+..+.|+|||++...+.+.++.|..     .|+++.++-...+|++++ .|.|.|..+.+ +....    .+.. ...
T Consensus        96 sgG~~~~Vkiwdl~~kl~hr~lkdh~s-----tvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt----~f~~~sgq  165 (673)
T KOG4378|consen   96 SGGQSGCVKIWDLRAKLIHRFLKDHQS-----TVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTT----TFTIDSGQ  165 (673)
T ss_pred             ccCcCceeeehhhHHHHHhhhccCCcc-----eeEEEEecCCcceeEEeccCCcEEEEeccc-Ccccc----ceecCCCC
Confidence            999999999999987666777776554     899999999999999998 79999999987 32222    2222 234


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-ccCCCCeEEEEEccCC-cEEEeeecCCCeEEEEEccCCCcc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGCI  237 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iwd~~~~~~~  237 (334)
                      .|+-+.|+|..+.+|.+++++|.|.+||+....++..+ ..|..+...++|+|.. .+|++.+ .|+.|.+||.+. ...
T Consensus       166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki~~yD~~s-~~s  243 (673)
T KOG4378|consen  166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-YDKKINIYDIRS-QAS  243 (673)
T ss_pred             eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-ccceEEEeeccc-ccc
Confidence            56789999999978889999999999999776665554 6799999999999955 5677888 899999999996 554


Q ss_pred             ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeec
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWK  310 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  310 (334)
                      ...+..   ..+...++|+++|.+|+.|+..|.|..||++..+           .++..+..|...|++++|.
T Consensus       244 ~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-----------~Pv~v~sah~~sVt~vafq  302 (673)
T KOG4378|consen  244 TDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-----------APVAVRSAHDASVTRVAFQ  302 (673)
T ss_pred             cceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCC-----------CCceEeeecccceeEEEee
Confidence            444542   5567789999999999999999999999999875           6888999999999999993

>KOG1036|consensus

Probab=99.94  E-value=5.1e-24  Score=162.64  Aligned_cols=238  Identities=17%  Similarity=0.174  Sum_probs=181.6

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCc
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSE  134 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~  134 (334)
                      .....|.++.|       +|.++.|++++.||++++||+........++. .+     ++.+++|.++. .+++|+ ||.
T Consensus        11 pP~d~IS~v~f-------~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~-~~-----plL~c~F~d~~-~~~~G~~dg~   76 (323)
T KOG1036|consen   11 PPEDGISSVKF-------SPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH-GA-----PLLDCAFADES-TIVTGGLDGQ   76 (323)
T ss_pred             CChhceeeEEE-------cCcCCcEEEEeccCcEEEEeccchhhhhheec-CC-----ceeeeeccCCc-eEEEeccCce
Confidence            34467888777       66788888889999999999988766555543 23     89999999865 466665 999


Q ss_pred             EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCc
Q psy2305         135 VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGI  214 (334)
Q Consensus       135 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  214 (334)
                      |+.+|+.+ +...     .+..|..+++|+.+++... .+++|+.|++|++||.++......+.. ...|.++...  |.
T Consensus        77 vr~~Dln~-~~~~-----~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~  146 (323)
T KOG1036|consen   77 VRRYDLNT-GNED-----QIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GN  146 (323)
T ss_pred             EEEEEecC-Ccce-----eeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccccccccc-CceEEEEecc--CC
Confidence            99999997 3333     3678999999999998877 999999999999999998666665553 3478888764  66


Q ss_pred             EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccc
Q psy2305         215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL  294 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  294 (334)
                      .|++|+ .+..+.+||+++...+.+ .......-.+.++++-|++.-.++++-||+|.+=.++..+..        ....
T Consensus       147 ~LvVg~-~~r~v~iyDLRn~~~~~q-~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~--------~skk  216 (323)
T KOG1036|consen  147 RLVVGT-SDRKVLIYDLRNLDEPFQ-RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA--------QSKK  216 (323)
T ss_pred             EEEEee-cCceEEEEEcccccchhh-hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH--------hhhc
Confidence            899988 899999999998444442 222223456778889998888999999999987655543110        1233


Q ss_pred             ceecccc---------cccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         295 YKFSAHQ---------DCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       295 ~~~~~~~---------~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ..|+.|.         -+|++++|  +|-.    ..||||+.||.|.+
T Consensus       217 yaFkCHr~~~~~~~~~yPVNai~F--hp~~----~tfaTgGsDG~V~~  258 (323)
T KOG1036|consen  217 YAFKCHRLSEKDTEIIYPVNAIAF--HPIH----GTFATGGSDGIVNI  258 (323)
T ss_pred             eeEEeeecccCCceEEEEeceeEe--cccc----ceEEecCCCceEEE
Confidence            4455553         27999999  9998    89999999998864

>KOG0302|consensus

Probab=99.93  E-value=2.4e-24  Score=168.59  Aligned_cols=255  Identities=17%  Similarity=0.221  Sum_probs=172.9

Q ss_pred             ceeEEEEcCCC--cEEEEeeCCCeEEEEECCCCCceeeeeCCCC--CCCCcceeeeeeeceeEEEEEEecccceecCCCc
Q psy2305           3 IEEDVDEAPDG--TCLLTNSNDNHLRTFDLPSELHCKSVWRPSN--QRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         3 ~V~~~~~sp~~--~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      .++.+.-++-+  .+.|+-+..|.|+||++........-.....  .......++.+ |...=++++|+|.     ..| 
T Consensus       153 ~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp~-----~~g-  225 (440)
T KOG0302|consen  153 GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSPI-----KTG-  225 (440)
T ss_pred             ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeecccc-----ccc-
Confidence            45556666644  4566667889999999875432210000001  11112233333 4466788888662     234 


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeE---EEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeeccc
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKA---TYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      .|++|..-+.|++|...+|....   .+..|.  .   .|-.++|||..+ .|++++ ||+|+|||++...+....   .
T Consensus       226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~--~---SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~---~  297 (440)
T KOG0302|consen  226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT--K---SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV---S  297 (440)
T ss_pred             ccccCccccceEeeeeccCceeecCccccccc--c---chhhhccCCccCceEEeeecCceEEEEEecCCCcccee---E
Confidence            47888888899999998876532   233333  2   899999999764 556777 999999999973222221   4


Q ss_pred             ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC---CCceEeeccCCCCeEEEEEccCC-cEEEeeecCCCeEEEE
Q psy2305         154 PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD---GRPLFFLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICW  229 (334)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iw  229 (334)
                      .+.|.+.|+.+.|+.... +||+|+.||+++|||+++   ++++..|+-|..+|+++.|+|.. ..|++++ .|..|.+|
T Consensus       298 ~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-~D~QitiW  375 (440)
T KOG0302|consen  298 TKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-EDNQITIW  375 (440)
T ss_pred             eeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-CCCcEEEE
Confidence            588999999999999999 999999999999999976   57888999999999999999954 4666777 89999999


Q ss_pred             EccCCCcc---------------ceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEe
Q psy2305         230 DLRNPGCI---------------LHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWN  275 (334)
Q Consensus       230 d~~~~~~~---------------~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd  275 (334)
                      |+......               .+.+--|.....+-.+.|+++- .+|++.+.|| +.||.
T Consensus       376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            99752210               0011112223344456777754 4677777787 55553

>KOG1034|consensus

Probab=99.93  E-value=4.1e-24  Score=164.49  Aligned_cols=289  Identities=12%  Similarity=0.136  Sum_probs=206.5

Q ss_pred             ceeEEEEcC----CC-cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           3 IEEDVDEAP----DG-TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         3 ~V~~~~~sp----~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      +|..++|++    +. ..+|+.+. +.+.+|+....-....+.          ......+.+..+.++|+-.   .....
T Consensus        40 ~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq----------~y~D~d~~Esfytcsw~yd---~~~~~  105 (385)
T KOG1034|consen   40 PIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQ----------SYADEDHDESFYTCSWSYD---SNTGN  105 (385)
T ss_pred             ccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeee----------eccCCCCCcceEEEEEEec---CCCCC
Confidence            578889985    22 35566654 579999887654321111          1112225567788888532   12235


Q ss_pred             cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeeccccc
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      .++|+++.-|.|+|.|+.+++....+.+|++     .|+.+.+.|+.. ++++++ |.+|++|++++ ...+.... -..
T Consensus       106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~-----sINeik~~p~~~qlvls~SkD~svRlwnI~~-~~Cv~VfG-G~e  178 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGG-----SINEIKFHPDRPQLVLSASKDHSVRLWNIQT-DVCVAVFG-GVE  178 (385)
T ss_pred             eeEEeecceeEEEEEecchhhhccceeccCc-----cchhhhcCCCCCcEEEEecCCceEEEEeccC-CeEEEEec-ccc
Confidence            5788999999999999999999999999887     899999999874 556777 99999999996 44443222 467


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE----------------------------eeccCCCCeEEE
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF----------------------------FLKGHNGGITHL  207 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------------~~~~~~~~i~~~  207 (334)
                      +|...|.++.|+++|. .|++++.|..|++|++...+...                            +-.-|...|.|+
T Consensus       179 gHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCv  257 (385)
T KOG1034|consen  179 GHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCV  257 (385)
T ss_pred             cccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHH
Confidence            8999999999999999 99999999999999997321100                            112345555566


Q ss_pred             EEccCCcEEEeeecCCCeEEEEEccCCCc-------------cceeecccccCCceEEEEecCCCceEEeeecCCcEEEE
Q psy2305         208 EFSSNGILLFSGARKDCEIICWDLRNPGC-------------ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW  274 (334)
Q Consensus       208 ~~~~~~~~l~~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw  274 (334)
                      .|-  |.++++-+ .++.|..|..-.-++             .+.++.......+...++|.|-+++||.|.+.|.|.+|
T Consensus       258 rw~--gd~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw  334 (385)
T KOG1034|consen  258 RWF--GDFILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW  334 (385)
T ss_pred             HHH--hhheeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence            664  57899988 899999998821111             12223333334456678889999999999999999999


Q ss_pred             eCCCCCCCCCCCccccccccceec--ccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         275 NVNTSNLPSSPYEESVQEPLYKFS--AHQDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       275 d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      |++..+..          ...++.  .....|...+|  +.|+    .+|+...+|++|-
T Consensus       335 dL~~~ep~----------~~ttl~~s~~~~tVRQ~sf--S~dg----s~lv~vcdd~~Vw  378 (385)
T KOG1034|consen  335 DLDNNEPP----------KCTTLTHSKSGSTVRQTSF--SRDG----SILVLVCDDGTVW  378 (385)
T ss_pred             ECCCCCCc----------cCceEEeccccceeeeeee--cccC----cEEEEEeCCCcEE
Confidence            99987421          112222  12347999999  9999    9999999999874

>KOG1274|consensus

Probab=99.93  E-value=1.3e-23  Score=181.57  Aligned_cols=241  Identities=14%  Similarity=0.158  Sum_probs=189.5

Q ss_pred             eeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCC-eeeEEEcCccccccccceeEEEEcCCCCEEEEee
Q psy2305          53 LKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGG-EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF  131 (334)
Q Consensus        53 ~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (334)
                      ++..|....+.++|       .|+|++|++++.||.|++|+.... +.-..+..+..     .|.+++.  ++.+|++++
T Consensus         8 lRyaht~G~t~i~~-------d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~-----~v~~ia~--~s~~f~~~s   73 (933)
T KOG1274|consen    8 LRYAHTGGLTLICY-------DPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGE-----LVSSIAC--YSNHFLTGS   73 (933)
T ss_pred             chhhccCceEEEEE-------cCCCCEEEEecCCCceEEeecCCcccCCchhhccCc-----eeEEEee--cccceEEee
Confidence            33345566777777       779999999999999999987655 33333332222     4555554  455788887


Q ss_pred             -CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEc
Q psy2305         132 -LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFS  210 (334)
Q Consensus       132 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  210 (334)
                       +++|.+|.+...... .    .+....-++++++++.+|. ++|.|+.|-.|++.++.+......+.+|.++|.++.|+
T Consensus        74 ~~~tv~~y~fps~~~~-~----iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~  147 (933)
T KOG1274|consen   74 EQNTVLRYKFPSGEED-T----ILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD  147 (933)
T ss_pred             ccceEEEeeCCCCCcc-c----eeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Confidence             999999999863222 1    2455677899999999999 99999999999999999999999999999999999999


Q ss_pred             cCCcEEEeeecCCCeEEEEEccCCCccceeeccccc------CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCC
Q psy2305         211 SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS------TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSS  284 (334)
Q Consensus       211 ~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  284 (334)
                      |++++|++.+ .||.+++||+.+ +.+...+.+-..      ...+..++|+|+|..++....|+.|++|+..+.     
T Consensus       148 p~~~fLAvss-~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w-----  220 (933)
T KOG1274|consen  148 PKGNFLAVSS-CDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW-----  220 (933)
T ss_pred             CCCCEEEEEe-cCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc-----
Confidence            9999999999 899999999997 665555543211      233556899999888888889999999999987     


Q ss_pred             CCccccccccceecc--cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         285 PYEESVQEPLYKFSA--HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       285 ~~~~~~~~~~~~~~~--~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                             +....+..  +...+..+.|  +|.|    +|||+++.||.|-+
T Consensus       221 -------e~~f~Lr~~~~ss~~~~~~w--sPnG----~YiAAs~~~g~I~v  258 (933)
T KOG1274|consen  221 -------ELQFKLRDKLSSSKFSDLQW--SPNG----KYIAASTLDGQILV  258 (933)
T ss_pred             -------eeheeecccccccceEEEEE--cCCC----cEEeeeccCCcEEE
Confidence                   55555543  3445899999  9999    99999999998864

>KOG0650|consensus

Probab=99.93  E-value=1e-23  Score=174.31  Aligned_cols=254  Identities=13%  Similarity=0.110  Sum_probs=197.9

Q ss_pred             CCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC
Q psy2305          44 NQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD  123 (334)
Q Consensus        44 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  123 (334)
                      ..+|.....+..+|.+.|.++.-       +|.|.+|++|+.||+|+||.+.+|.+++.++...      .|.|++|+|.
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSv-------dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~------~I~~vaw~P~  452 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISV-------DPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS------EIRSVAWNPL  452 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEe-------cCCcceeeecCCCCcEEEEEeecceEEEEEeecc------eeEEEEecCC
Confidence            34455555666677788877655       7799999999999999999999999999987644      7999999998


Q ss_pred             CC--EEEEeeCCcEEEEEcCCCCC--------eeeee---------------c---------ccccccccceEEEEEcCC
Q psy2305         124 GN--KIYAGFLSEVKIFSTDRPGR--------ECVSR---------------N---------LKPWFRKNIVSAIAINPV  169 (334)
Q Consensus       124 ~~--~l~~~~d~~i~i~d~~~~~~--------~~~~~---------------~---------~~~~~~~~~v~~~~~~~~  169 (334)
                      +.  .|+++.+..+.|.+..-+.+        .+...               .         ...-.|...|..+.|+..
T Consensus       453 ~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk  532 (733)
T KOG0650|consen  453 SDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK  532 (733)
T ss_pred             CCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence            65  44455444455544322100        00000               0         012346788999999999


Q ss_pred             CCcEEEEeecC---CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccccc
Q psy2305         170 HPDICALGTYS---KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS  246 (334)
Q Consensus       170 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  246 (334)
                      |. +|++..-+   ..|.|+++...+....|....+.|.++.|+|...+|++++  ...|+|||+.. +..++.+...  
T Consensus       533 GD-YlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~k-qelvKkL~tg--  606 (733)
T KOG0650|consen  533 GD-YLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSK-QELVKKLLTG--  606 (733)
T ss_pred             Cc-eEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhH-HHHHHHHhcC--
Confidence            99 89887543   5799999977666666666678899999999999999987  78999999987 6656555533  


Q ss_pred             CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeee
Q psy2305         247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCS  326 (334)
Q Consensus       247 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~  326 (334)
                      ...+..++.+|.|.-|+.++.|+.+..||+.-..           ++.+.+.-|...+++++|  ++.-    +++++|+
T Consensus       607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlss-----------kPyk~lr~H~~avr~Va~--H~ry----PLfas~s  669 (733)
T KOG0650|consen  607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS-----------KPYKTLRLHEKAVRSVAF--HKRY----PLFASGS  669 (733)
T ss_pred             CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc-----------chhHHhhhhhhhhhhhhh--cccc----ceeeeec
Confidence            5567789999999999999999999999998764           688899999999999999  9999    9999999


Q ss_pred             cceeeee
Q psy2305         327 GQITNVK  333 (334)
Q Consensus       327 ~d~~i~~  333 (334)
                      .||++.+
T Consensus       670 dDgtv~V  676 (733)
T KOG0650|consen  670 DDGTVIV  676 (733)
T ss_pred             CCCcEEE
Confidence            9999876

>KOG2445|consensus

Probab=99.93  E-value=1.2e-22  Score=155.26  Aligned_cols=258  Identities=14%  Similarity=0.220  Sum_probs=186.6

Q ss_pred             eeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCC----eeeEEEcCccccccccceeEEEEcCC--CC
Q psy2305          52 TLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGG----EIKATYRPYNQVDEVTHAYSLAFSLD--GN  125 (334)
Q Consensus        52 ~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~--~~  125 (334)
                      .+...|..-|.++.|       ++-|+.+|+|+.|++|+|||....    .+....+.|..     .|..+.|.+-  |+
T Consensus         7 pi~s~h~DlihdVs~-------D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-----Si~rV~WAhPEfGq   74 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSF-------DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-----SIWRVVWAHPEFGQ   74 (361)
T ss_pred             ccccCCcceeeeeee-------cccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-----cEEEEEecCccccc
Confidence            344556677888777       678999999999999999997543    34445555544     8999999764  78


Q ss_pred             EEEEee-CCcEEEEEcCC-----CCCeeeeecccccccccceEEEEEcCCCC-cEEEEeecCCeEEEEECCCC------C
Q psy2305         126 KIYAGF-LSEVKIFSTDR-----PGRECVSRNLKPWFRKNIVSAIAINPVHP-DICALGTYSKIIGLFSDSDG------R  192 (334)
Q Consensus       126 ~l~~~~-d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~------~  192 (334)
                      .+++++ |+++.||.-..     .++.-.... .+......|+.+.|.|... ..+|+++.||.++||+....      .
T Consensus        75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~t-tl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~  153 (361)
T KOG2445|consen   75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRT-TLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT  153 (361)
T ss_pred             eEEEEecCCceeeeeecccccccccceeEEEE-EeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence            899887 99999998631     111111111 4566788999999999743 27889999999999987543      2


Q ss_pred             ceEeec-------cCCCCeEEEEEccC---CcEEEeeecCC-----CeEEEEEccCCCc-c--ceeecccccCCceEEEE
Q psy2305         193 PLFFLK-------GHNGGITHLEFSSN---GILLFSGARKD-----CEIICWDLRNPGC-I--LHTFPRQVSTNQRVYFD  254 (334)
Q Consensus       193 ~~~~~~-------~~~~~i~~~~~~~~---~~~l~~~~~~d-----~~i~iwd~~~~~~-~--~~~~~~~~~~~~~~~~~  254 (334)
                      ....++       .+..+..|+.|+|.   ..+|++|+ .+     +.++||.....+. .  +.++.+  +...+..++
T Consensus       154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs-~e~a~~~~~~~Iye~~e~~rKw~kva~L~d--~~dpI~di~  230 (361)
T KOG2445|consen  154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGS-DEDAPHLNKVKIYEYNENGRKWLKVAELPD--HTDPIRDIS  230 (361)
T ss_pred             hhhhhhhccCCcccccCcceEEeeccccccCceEEEEc-ccCCccccceEEEEecCCcceeeeehhcCC--CCCcceeee
Confidence            223333       45677889999974   45888888 44     4789998876442 2  233443  477899999


Q ss_pred             ecCCC----ceEEeeecCCcEEEEeCCCCCCCC------CCC--ccccccccceecccccccceeeeccCCCcccceeeE
Q psy2305         255 LTSCS----NYLLSGNTNGDLSIWNVNTSNLPS------SPY--EESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVAD  322 (334)
Q Consensus       255 ~s~~~----~~l~~~~~dg~i~iwd~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l  322 (334)
                      |.|+-    ..||+++.|| |+||++.......      .|.  .+-..+.+..+..|.+.|+.+.|  +-.|    ..|
T Consensus       231 wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w--NmtG----tiL  303 (361)
T KOG2445|consen  231 WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW--NMTG----TIL  303 (361)
T ss_pred             eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE--eeee----eEE
Confidence            99953    5789999999 9999998543211      111  11233456667889999999999  9999    999


Q ss_pred             Eeeecceeee
Q psy2305         323 ATCSGQITNV  332 (334)
Q Consensus       323 ~t~~~d~~i~  332 (334)
                      ++.|.||.++
T Consensus       304 sStGdDG~VR  313 (361)
T KOG2445|consen  304 SSTGDDGCVR  313 (361)
T ss_pred             eecCCCceee
Confidence            9999999886

>KOG2048|consensus

Probab=99.92  E-value=7.8e-23  Score=171.30  Aligned_cols=232  Identities=16%  Similarity=0.187  Sum_probs=184.1

Q ss_pred             cceecCCCcEEEEeeCCCcEEEEeCCCCeee-EEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeee
Q psy2305          70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK-ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV  148 (334)
Q Consensus        70 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~  148 (334)
                      +++++.+.+.||.+-.+|.|.+|++..+-.. ..+.+    .+.+.|.+++|++.++++-++.+|.|.-||+.+ .+...
T Consensus        30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g----~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~-lk~~~  104 (691)
T KOG2048|consen   30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG----PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHT-LKQKY  104 (691)
T ss_pred             EEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec----CCCCceeeEEEccCCeEEeecCCceEEEEeccc-CceeE
Confidence            4556888889999999999999999876543 33333    222389999999766655556699999999997 55554


Q ss_pred             eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305         149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILLFSGARKDCEI  226 (334)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i  226 (334)
                          ......+.|.+++.+|.+. .++.|++||.+..++...++...  .|....+.|.+++|+|++..|+.|+ .||.|
T Consensus       105 ----~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs-~Dg~I  178 (691)
T KOG2048|consen  105 ----NIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS-IDGVI  178 (691)
T ss_pred             ----EecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc-cCceE
Confidence                3566778999999999999 99999999988888887765543  3445568999999999999999999 99999


Q ss_pred             EEEEccCCCccceeecc-----c-ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccc
Q psy2305         227 ICWDLRNPGCILHTFPR-----Q-VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH  300 (334)
Q Consensus       227 ~iwd~~~~~~~~~~~~~-----~-~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  300 (334)
                      ++||... +..+.....     . ....-++++.|-. ...|++|...|+|.+||...+            ..++.+..|
T Consensus       179 riwd~~~-~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~g------------TLiqS~~~h  244 (691)
T KOG2048|consen  179 RIWDVKS-GQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFG------------TLIQSHSCH  244 (691)
T ss_pred             EEEEcCC-CceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCc------------chhhhhhhh
Confidence            9999998 554442211     1 1234466776653 457889999999999999998            788889999


Q ss_pred             ccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         301 QDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      ...|.+++.  .+++    .+++++|.|+.+.
T Consensus       245 ~adVl~Lav--~~~~----d~vfsaGvd~~ii  270 (691)
T KOG2048|consen  245 DADVLALAV--ADNE----DRVFSAGVDPKII  270 (691)
T ss_pred             hcceeEEEE--cCCC----CeEEEccCCCceE
Confidence            999999999  9999    9999999999874

>KOG0301|consensus

Probab=99.92  E-value=2.6e-23  Score=174.60  Aligned_cols=225  Identities=15%  Similarity=0.183  Sum_probs=181.9

Q ss_pred             EEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC
Q psy2305           7 VDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM   85 (334)
Q Consensus         7 ~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~   85 (334)
                      ++|-+ ++-+|++|+.|.++.+|........              ..+.+ |...|+++.-       ..++. +++|+.
T Consensus        64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~--------------~~Lkg-H~snVC~ls~-------~~~~~-~iSgSW  120 (745)
T KOG0301|consen   64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPL--------------YTLKG-HKSNVCSLSI-------GEDGT-LISGSW  120 (745)
T ss_pred             ceeccccCcceEeecccceEEEEecCCCCch--------------hhhhc-cccceeeeec-------CCcCc-eEeccc
Confidence            56654 4556999999999999999988765              45555 5577877764       33444 899999


Q ss_pred             CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEE
Q psy2305          86 YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAI  164 (334)
Q Consensus        86 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~  164 (334)
                      |.++++|-.  +++...+++|..     .|+.++.-|++ .+++|+ |.+|++|.-.   +.+.    .+.+|...|+++
T Consensus       121 D~TakvW~~--~~l~~~l~gH~a-----sVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~----tf~gHtD~VRgL  185 (745)
T KOG0301|consen  121 DSTAKVWRI--GELVYSLQGHTA-----SVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLK----TFSGHTDCVRGL  185 (745)
T ss_pred             ccceEEecc--hhhhcccCCcch-----heeeeeecCCC-cEEeccCcceeeeccCC---chhh----hhccchhheeee
Confidence            999999974  556666777665     89999999998 566676 9999999853   3444    689999999999


Q ss_pred             EEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccc
Q psy2305         165 AINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ  244 (334)
Q Consensus       165 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~  244 (334)
                      ++-+++.  |++++.||.|++|++ +++.+.++.+|..-+++++..+++..+++++ +|++++||+..   .+.+.+...
T Consensus       186 ~vl~~~~--flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~---e~~q~I~lP  258 (745)
T KOG0301|consen  186 AVLDDSH--FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKD---ECVQVITLP  258 (745)
T ss_pred             EEecCCC--eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecC---ceEEEEecC
Confidence            9999984  889999999999998 8999999999999999999888888999999 99999999986   344555433


Q ss_pred             ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         245 VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       245 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                        ...++++.+-++|.. ++|+.||.|+||.....
T Consensus       259 --ttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  259 --TTSIWSAKVLLNGDI-VVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             --ccceEEEEEeeCCCE-EEeccCceEEEEEeccc
Confidence              456777777777765 56778999999987744

>KOG1063|consensus

Probab=99.92  E-value=3.7e-23  Score=173.67  Aligned_cols=292  Identities=15%  Similarity=0.150  Sum_probs=213.3

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      -+..-|+|++..+++-+..|-.++|.......           +.+...+ .+|-..|.+++|       +|.|.+|++.
T Consensus       319 F~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~-----------w~~~~~i-SGH~~~V~dv~W-------~psGeflLsv  379 (764)
T KOG1063|consen  319 FWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTF-----------WTQEPVI-SGHVDGVKDVDW-------DPSGEFLLSV  379 (764)
T ss_pred             eeeEEEcCCCCEEEEecccCcEEEEeccCccc-----------eeecccc-ccccccceeeee-------cCCCCEEEEe
Confidence            45778999999999999999999999333211           1122233 346688999999       6689999999


Q ss_pred             eCCCcEEEEeCCC----CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCC---------------
Q psy2305          84 SMYAPIHLWDSVG----GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRP---------------  143 (334)
Q Consensus        84 ~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~---------------  143 (334)
                      +.|.+-+++-.-.    -..+..-+.|++     ..+|++|-+....+++|. ...+++|+....               
T Consensus       380 s~DQTTRlFa~wg~q~~wHEiaRPQiHGy-----Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~  454 (764)
T KOG1063|consen  380 SLDQTTRLFARWGRQQEWHEIARPQIHGY-----DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKG  454 (764)
T ss_pred             ccccceeeecccccccceeeecccccccc-----cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccC
Confidence            9999999986431    123344455555     789999998656677766 688888875410               


Q ss_pred             ---------------------------CCe---eeeec------------c--------------cccccccceEEEEEc
Q psy2305         144 ---------------------------GRE---CVSRN------------L--------------KPWFRKNIVSAIAIN  167 (334)
Q Consensus       144 ---------------------------~~~---~~~~~------------~--------------~~~~~~~~v~~~~~~  167 (334)
                                                 +..   ....+            +              ++.+|...|.+++.+
T Consensus       455 ~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s  534 (764)
T KOG1063|consen  455 SDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAIS  534 (764)
T ss_pred             chhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEec
Confidence                                       000   00000            0              677899999999999


Q ss_pred             CCCCcEEEEeecCC-----eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeec
Q psy2305         168 PVHPDICALGTYSK-----IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP  242 (334)
Q Consensus       168 ~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~  242 (334)
                      |+++ ++|+++...     .|++|+..+...++.+.+|+-.|+.++|||||++|++.+ .|+++.+|...........+.
T Consensus       535 ~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs-RDRt~sl~~~~~~~~~e~~fa  612 (764)
T KOG1063|consen  535 PTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS-RDRTVSLYEVQEDIKDEFRFA  612 (764)
T ss_pred             CCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEee-cCceEEeeeeecccchhhhhc
Confidence            9999 999987653     599999999888899999999999999999999999999 799999999865322222211


Q ss_pred             -ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccc--eecccccccceeeeccCCC-cccc
Q psy2305         243 -RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY--KFSAHQDCTNGVRWKHHKF-ERDL  318 (334)
Q Consensus       243 -~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~s~~-~~~~  318 (334)
                       ...+..-+++.+|+|++.++++++.|.+|++|.......          +.+.  ....+...|+.++|  .|- .++.
T Consensus       613 ~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d----------~~i~~~a~~~~~~aVTAv~~--~~~~~~e~  680 (764)
T KOG1063|consen  613 CLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD----------KYISRFACLKFSLAVTAVAY--LPVDHNEK  680 (764)
T ss_pred             cccccceEEEEcccCcccceeEEecCCceEEEEeccCchh----------hhhhhhchhccCCceeeEEe--eccccccc
Confidence             222366788999999999999999999999999887621          1111  34456788999999  653 2111


Q ss_pred             eeeEEeeecceeeee
Q psy2305         319 LVADATCSGQITNVK  333 (334)
Q Consensus       319 ~~~l~t~~~d~~i~~  333 (334)
                      ...++.|-..|.|++
T Consensus       681 ~~~vavGle~GeI~l  695 (764)
T KOG1063|consen  681 GDVVAVGLEKGEIVL  695 (764)
T ss_pred             cceEEEEecccEEEE
Confidence            136777878887764

>KOG4283|consensus

Probab=99.92  E-value=6.7e-23  Score=155.79  Aligned_cols=218  Identities=19%  Similarity=0.231  Sum_probs=163.4

Q ss_pred             eeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCee----------eEEEcCccccccccceeEEEEc
Q psy2305          52 TLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEI----------KATYRPYNQVDEVTHAYSLAFS  121 (334)
Q Consensus        52 ~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~  121 (334)
                      .+...|++.|+.+..-|.      .|+++++|+.||.|.+||++....          +..+.......+.-.|.++.|-
T Consensus        37 d~~r~HgGsvNsL~id~t------egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy  110 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLT------EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY  110 (397)
T ss_pred             ceeccCCCccceeeeccc------cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe
Confidence            345567788988877543      799999999999999999975431          1111111111122278999999


Q ss_pred             CCCC-EEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCC--cEEEEeecCCeEEEEECCCCCceEee
Q psy2305         122 LDGN-KIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHP--DICALGTYSKIIGLFSDSDGRPLFFL  197 (334)
Q Consensus       122 ~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~  197 (334)
                      |-.. .+.+++ |.++++||.++ -+...     ....++.|.+-+++|-..  .++|+|..+-.|++.|+.+|...+++
T Consensus       111 P~DtGmFtssSFDhtlKVWDtnT-lQ~a~-----~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L  184 (397)
T KOG4283|consen  111 PIDTGMFTSSSFDHTLKVWDTNT-LQEAV-----DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL  184 (397)
T ss_pred             eecCceeecccccceEEEeeccc-ceeeE-----EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee
Confidence            9554 444566 99999999997 33332     233456677778877542  47889999999999999999999999


Q ss_pred             ccCCCCeEEEEEccCCcE-EEeeecCCCeEEEEEccCCCccceeeccc------------ccCCceEEEEecCCCceEEe
Q psy2305         198 KGHNGGITHLEFSSNGIL-LFSGARKDCEIICWDLRNPGCILHTFPRQ------------VSTNQRVYFDLTSCSNYLLS  264 (334)
Q Consensus       198 ~~~~~~i~~~~~~~~~~~-l~~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~s~~~~~l~~  264 (334)
                      .+|.+.|.++.|+|...+ |++|+ .||.|++||++....+...+..|            .+.+.+..++|+.++.++++
T Consensus       185 sGHr~~vlaV~Wsp~~e~vLatgs-aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~  263 (397)
T KOG4283|consen  185 SGHRDGVLAVEWSPSSEWVLATGS-ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS  263 (397)
T ss_pred             ccccCceEEEEeccCceeEEEecC-CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence            999999999999998775 66777 99999999999743344433322            23456778999999999999


Q ss_pred             eecCCcEEEEeCCCCCCC
Q psy2305         265 GNTNGDLSIWNVNTSNLP  282 (334)
Q Consensus       265 ~~~dg~i~iwd~~~~~~~  282 (334)
                      .+.|..+++|+..+|+..
T Consensus       264 ~gtd~r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  264 CGTDDRIRVWNMESGRNT  281 (397)
T ss_pred             ccCccceEEeecccCccc
Confidence            999999999999988644

>KOG1445|consensus

Probab=99.92  E-value=2e-23  Score=173.99  Aligned_cols=151  Identities=18%  Similarity=0.225  Sum_probs=123.3

Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-------CceEeeccCCCCeEEEEEccC-CcEEEeeecCCCeEEEEEc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDG-------RPLFFLKGHNGGITHLEFSSN-GILLFSGARKDCEIICWDL  231 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~d~~i~iwd~  231 (334)
                      .|+.+.|.|-....|+++++||.|++|.+..+       .+...++.|...|+++.|+|- ...|++++ .|-+|++||+
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as-yd~Ti~lWDl  707 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS-YDSTIELWDL  707 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh-ccceeeeeeh
Confidence            35667787766658999999999999998643       456778899999999999994 45788899 8999999999


Q ss_pred             cCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc-ccceeeec
Q psy2305         232 RNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD-CTNGVRWK  310 (334)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~  310 (334)
                      ++ .+....+.+|  ...+..++|||+|+.+++.+.||+|++|+.++++           +++++-.+..+ .-..+.| 
T Consensus       708 ~~-~~~~~~l~gH--tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e-----------~pv~Eg~gpvgtRgARi~w-  772 (1012)
T KOG1445|consen  708 AN-AKLYSRLVGH--TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE-----------QPVYEGKGPVGTRGARILW-  772 (1012)
T ss_pred             hh-hhhhheeccC--cCceeEEEECCCCcceeeeecCceEEEeCCCCCC-----------CccccCCCCccCcceeEEE-
Confidence            98 7777888887  7789999999999999999999999999999875           45555444332 3346788 


Q ss_pred             cCCCcccceeeEEeeecceee
Q psy2305         311 HHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       311 ~s~~~~~~~~~l~t~~~d~~i  331 (334)
                       .-+|    ++++..|.|..-
T Consensus       773 -acdg----r~viv~Gfdk~S  788 (1012)
T KOG1445|consen  773 -ACDG----RIVIVVGFDKSS  788 (1012)
T ss_pred             -EecC----cEEEEecccccc
Confidence             8899    999988888653

>KOG1009|consensus

Probab=99.92  E-value=4.8e-23  Score=162.79  Aligned_cols=285  Identities=14%  Similarity=0.144  Sum_probs=196.6

Q ss_pred             CceeEEEEcCCCc-EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGT-CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      ++|.++.|.++.. .||||+.|..|++|.+.......     .....+....+. .|...|+.+.|       +|+|++|
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-----~~~~V~y~s~Ls-~H~~aVN~vRf-------~p~gelL   80 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-----GDMKVEYLSSLS-RHTRAVNVVRF-------SPDGELL   80 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCC-----CceeEEEeeccc-CCcceeEEEEE-------cCCcCee
Confidence            5789999999766 99999999999999987665431     000111222333 46688988888       7799999


Q ss_pred             EEeeCCCcEEEEeCC--------C--------CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCC
Q psy2305          81 LCSSMYAPIHLWDSV--------G--------GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRP  143 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~--------~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~  143 (334)
                      ++|+.+|.|.+|...        +        ....+.+..|..     .|+.++|+|++.++++++ |+.+++||+.. 
T Consensus        81 ASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-----diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-  154 (434)
T KOG1009|consen   81 ASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-----DIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-  154 (434)
T ss_pred             eecCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccccc-----chhhhhccCCCceeeeeeccceEEEEEecc-
Confidence            999999999999754        2        112333444333     889999999999999998 99999999997 


Q ss_pred             CCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec--------c-----------CC---
Q psy2305         144 GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK--------G-----------HN---  201 (334)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~-----------~~---  201 (334)
                      +....    .+.+|...+..++|.|-++ ++++-+.|...+.+.+...+.++...        .           |.   
T Consensus       155 G~l~~----~~~dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTl  229 (434)
T KOG1009|consen  155 GQLLA----ILDDHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETL  229 (434)
T ss_pred             ceeEe----eccccccccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCch
Confidence            66655    6889999999999999999 99999888877777764433222110        0           11   


Q ss_pred             -CCeEEEEEccCCcEEEeeec---CC-----CeEEEEEccCCCccceeecccccCCceEEEEecC---------------
Q psy2305         202 -GGITHLEFSSNGILLFSGAR---KD-----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTS---------------  257 (334)
Q Consensus       202 -~~i~~~~~~~~~~~l~~~~~---~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~---------------  257 (334)
                       .-...++|+|+|.+|++.++   ..     +..++++-.....+...+...  ......+.|+|               
T Consensus       230 ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~--~k~~lavr~~pVy~elrp~~~~~~~~  307 (434)
T KOG1009|consen  230 KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP--KKPALAVRFSPVYYELRPLSSEKFLF  307 (434)
T ss_pred             hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC--CcceEEEEeeeeEEEecccccccccc
Confidence             11345789999999887642   11     223444433223333333322  22233333333               


Q ss_pred             ---CCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee-cccccccceeeeccCCCcccceeeEEeeecceee
Q psy2305         258 ---CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF-SAHQDCTNGVRWKHHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       258 ---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i  331 (334)
                         -+..++.++. ..|++||.++.            .++... .-|-..|++++|  ++||    .+|+..|.||-.
T Consensus       308 ~lpyrlvfaiAt~-~svyvydtq~~------------~P~~~v~nihy~~iTDiaw--s~dg----~~l~vSS~DGyC  366 (434)
T KOG1009|consen  308 VLPYRLVFAIATK-NSVYVYDTQTL------------EPLAVVDNIHYSAITDIAW--SDDG----SVLLVSSTDGFC  366 (434)
T ss_pred             ccccceEEEEeec-ceEEEeccccc------------cceEEEeeeeeeeecceee--cCCC----cEEEEeccCCce
Confidence               3334556654 47999999886            455444 346778999999  9999    999999999853

>KOG4227|consensus

Probab=99.92  E-value=8.1e-23  Score=161.26  Aligned_cols=303  Identities=12%  Similarity=0.117  Sum_probs=217.0

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      -|+++.||.++++||+|+.|..+++|+++..-..        ..|.+......+|...|.+++|       ...++.+.+
T Consensus        58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~--------k~~KPI~~~~~~H~SNIF~L~F-------~~~N~~~~S  122 (609)
T KOG4227|consen   58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVR--------KTPKPIGVMEHPHRSNIFSLEF-------DLENRFLYS  122 (609)
T ss_pred             ccceeeeccCCeEEeecCCcceeeeechHHHHhh--------cCCCCceeccCccccceEEEEE-------ccCCeeEec
Confidence            4789999999999999999999999998743221        1111223445556688998888       557888999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      |..+++|.+.|+++.+.+..+..   .+..+.|+.+..+|..+.|++.+ ++.|.+||.+.........  .........
T Consensus       123 G~~~~~VI~HDiEt~qsi~V~~~---~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~--~~AN~~~~F  197 (609)
T KOG4227|consen  123 GERWGTVIKHDIETKQSIYVANE---NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV--LPANSGKNF  197 (609)
T ss_pred             CCCcceeEeeecccceeeeeecc---cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee--eecCCCccc
Confidence            99999999999999888776653   33334899999999988888777 8999999998633233221  234445677


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCC-ceEe------eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGR-PLFF------LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP  234 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~------~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~  234 (334)
                      ..+.|+|..+.+|++.+..+.+-+||.+... ++..      ++.....-.+..|+|+|..|++.- ....-.+||+.+.
T Consensus       198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R~~~P~~~D~~S~  276 (609)
T KOG4227|consen  198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-RGKCPLYFDFISQ  276 (609)
T ss_pred             eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-ccCCCEEeeeecc
Confidence            8899999998889999999999999997642 2211      121122336788999999998887 5667778998863


Q ss_pred             Cccceeecccc----cCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCC-----------CCccccccccceecc
Q psy2305         235 GCILHTFPRQV----STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSS-----------PYEESVQEPLYKFSA  299 (334)
Q Consensus       235 ~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~  299 (334)
                      ..++..+....    ....+-+++|-.|- -+++|+.+-.|++|.+........           |..--..+.+..+++
T Consensus       277 R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrG  355 (609)
T KOG4227|consen  277 RCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRG  355 (609)
T ss_pred             cceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEec
Confidence            33344443111    12234456665544 489999999999999865422110           100012244566889


Q ss_pred             cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         300 HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       300 ~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |...++.+.|  +|..    .+|++.+-.+.||+
T Consensus       356 HRSv~NQVRF--~~H~----~~l~SSGVE~~~Kl  383 (609)
T KOG4227|consen  356 HRSVPNQVRF--SQHN----NLLVSSGVENSFKL  383 (609)
T ss_pred             ccccccceee--cCCc----ceEeccchhhheec
Confidence            9999999999  9999    89999998888875

>KOG2110|consensus

Probab=99.92  E-value=3.8e-21  Score=150.53  Aligned_cols=241  Identities=16%  Similarity=0.164  Sum_probs=185.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..+..+.|+.+...|..|+.|| .++|+.......               .-....+..|..+-|         ...++|
T Consensus         6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~---------------~~~~~~~~~IvEmLF---------SSSLva   60 (391)
T KOG2110|consen    6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC---------------FSKDTEGVSIVEMLF---------SSSLVA   60 (391)
T ss_pred             cceeeeeeccceeEEEccCCCc-eeEEecCchHHh---------------hcccCCCeEEEEeec---------ccceeE
Confidence            5678888999999999999998 788887765431               111112344555555         334566


Q ss_pred             EeeCCC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSMYA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ..+.+.  .+++.+++.+..+..+.-..      .|.++.++.+  .|++.-...|.|||++. -+.+..+. ....+..
T Consensus        61 iV~~~qpr~Lkv~~~Kk~~~ICe~~fpt------~IL~VrmNr~--RLvV~Lee~IyIydI~~-MklLhTI~-t~~~n~~  130 (391)
T KOG2110|consen   61 IVSIKQPRKLKVVHFKKKTTICEIFFPT------SILAVRMNRK--RLVVCLEESIYIYDIKD-MKLLHTIE-TTPPNPK  130 (391)
T ss_pred             EEecCCCceEEEEEcccCceEEEEecCC------ceEEEEEccc--eEEEEEcccEEEEeccc-ceeehhhh-ccCCCcc
Confidence            555443  58999998888887766433      7889998864  57766655699999996 45544322 2335666


Q ss_pred             ceEEEEEcCCCCcEEEEe--ecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCe-EEEEEccCCCc
Q psy2305         160 IVSAIAINPVHPDICALG--TYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCE-IICWDLRNPGC  236 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~-i~iwd~~~~~~  236 (334)
                      .+.++.+++.+. +++.-  ...|.|.+||..+-+++..+..|.+++.+++|+++|.+||+++ +.|+ ||++.+.+ ++
T Consensus       131 gl~AlS~n~~n~-ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS-eKGTVIRVf~v~~-G~  207 (391)
T KOG2110|consen  131 GLCALSPNNANC-YLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS-EKGTVIRVFSVPE-GQ  207 (391)
T ss_pred             ceEeeccCCCCc-eEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec-cCceEEEEEEcCC-cc
Confidence            777777777777 77653  3468999999999999999999999999999999999999999 7776 68999987 88


Q ss_pred             cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      .+.+|........+.+++|+|++++|++.+..++|++|.++...
T Consensus       208 kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  208 KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            88999877677889999999999999999999999999988654

>KOG1188|consensus

Probab=99.92  E-value=8.9e-23  Score=157.98  Aligned_cols=277  Identities=12%  Similarity=0.093  Sum_probs=194.1

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEe
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWD   93 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd   93 (334)
                      +.+|++-..|.|++||..+++..+              .+.+ +...++.++|.-     ......+.+|+.||+|++||
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~--------------~fk~-~~~~~N~vrf~~-----~ds~h~v~s~ssDG~Vr~wD  100 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLE--------------EFKG-PPATTNGVRFIS-----CDSPHGVISCSSDGTVRLWD  100 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhh--------------eecC-CCCcccceEEec-----CCCCCeeEEeccCCeEEEEE
Confidence            458888899999999999987763              3333 335566666631     11455789999999999999


Q ss_pred             CCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-----CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcC
Q psy2305          94 SVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-----LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINP  168 (334)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  168 (334)
                      ++.......+....+.  ..+..+++.+-.++.+++|.     +-.|.+||++...+.+..   ....|...|+++.|+|
T Consensus       101 ~Rs~~e~a~~~~~~~~--~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~---~~eSH~DDVT~lrFHP  175 (376)
T KOG1188|consen  101 IRSQAESARISWTQQS--GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ---LNESHNDDVTQLRFHP  175 (376)
T ss_pred             eecchhhhheeccCCC--CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh---hhhhccCcceeEEecC
Confidence            9887766555543333  12567777776778888773     568999999985554544   4678999999999999


Q ss_pred             CCCcEEEEeecCCeEEEEECCCCC---ceEeeccCCCCeEEEEEccCC-cEEEeeecCCCeEEEEEccCCCccceeeccc
Q psy2305         169 VHPDICALGTYSKIIGLFSDSDGR---PLFFLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGCILHTFPRQ  244 (334)
Q Consensus       169 ~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~  244 (334)
                      ..+++|++|+.||-|.+||++...   .+...-.|...|..+.|..++ +.|.+-+ ...+..+|+++. +.+...+...
T Consensus       176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT-H~Etf~~~ele~-~~~~~~~~~~  253 (376)
T KOG1188|consen  176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT-HMETFAIYELED-GSEETWLENP  253 (376)
T ss_pred             CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE-ccCceeEEEccC-CChhhcccCc
Confidence            999999999999999999996542   222223477889999999877 4577777 899999999987 4443333321


Q ss_pred             cc----------CCceEEEEecC-CCceEEeeec-CCcEEEEeC---CCCCCCCCCCccccccccceecc-cccccceee
Q psy2305         245 VS----------TNQRVYFDLTS-CSNYLLSGNT-NGDLSIWNV---NTSNLPSSPYEESVQEPLYKFSA-HQDCTNGVR  308 (334)
Q Consensus       245 ~~----------~~~~~~~~~s~-~~~~l~~~~~-dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~  308 (334)
                      ..          ...+... .+| ++..++.++. -+...++-+   .++...         +.+..+.+ |...|+++.
T Consensus       254 ~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~---------~~~a~l~g~~~eiVR~i~  323 (376)
T KOG1188|consen  254 DVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLL---------TEPAILQGGHEEIVRDIL  323 (376)
T ss_pred             cchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeeccccccc---------CccccccCCcHHHHHHHh
Confidence            10          1122222 223 4445555444 455555433   444333         55566666 667899999


Q ss_pred             eccCCCcccceeeEEeeecceeeee
Q psy2305         309 WKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       309 ~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |  ...+    .++.|||+||.+++
T Consensus       324 ~--~~~~----~~l~TGGEDG~l~~  342 (376)
T KOG1188|consen  324 F--DVKN----DVLYTGGEDGLLQA  342 (376)
T ss_pred             h--hccc----ceeeccCCCceEEE
Confidence            9  8888    89999999999874

>KOG1538|consensus

Probab=99.91  E-value=1.2e-22  Score=170.40  Aligned_cols=267  Identities=15%  Similarity=0.165  Sum_probs=205.2

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|..++|-|||..|+.+.. ..+.+||...+...              .++.+ |...|++++|       +.||+.+++
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~ll--------------qtLKg-HKDtVycVAy-------s~dGkrFAS   70 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLL--------------QPLKG-HKDTVYCVAY-------AKDGKRFAS   70 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccc--------------ccccc-ccceEEEEEE-------ccCCceecc
Confidence            4788999999998877754 47999999999876              46665 5688999988       779999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      |+.|..|.+|+.+-...++ +.   |.+   .|.||.|+|-.+.|++++-...-+|....  +.+.     .......+.
T Consensus        71 G~aDK~VI~W~~klEG~Lk-YS---H~D---~IQCMsFNP~~h~LasCsLsdFglWS~~q--K~V~-----K~kss~R~~  136 (1081)
T KOG1538|consen   71 GSADKSVIIWTSKLEGILK-YS---HND---AIQCMSFNPITHQLASCSLSDFGLWSPEQ--KSVS-----KHKSSSRII  136 (1081)
T ss_pred             CCCceeEEEecccccceee-ec---cCC---eeeEeecCchHHHhhhcchhhccccChhh--hhHH-----hhhhheeEE
Confidence            9999999999865333332 22   333   89999999999999998866677898773  3322     123356788


Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec---cCCCCeEEEEEccCC-----cEEEeeecCCCeEEEEEccCC
Q psy2305         163 AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK---GHNGGITHLEFSSNG-----ILLFSGARKDCEIICWDLRNP  234 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-----~~l~~~~~~d~~i~iwd~~~~  234 (334)
                      +.+|..||+ +++.|-.+|+|.+-+- ++++...+.   +...+|.+++|+|+.     ..+++.. ...++.+|.+.  
T Consensus       137 ~CsWtnDGq-ylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D-W~qTLSFy~Ls--  211 (1081)
T KOG1538|consen  137 CCSWTNDGQ-YLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD-WGQTLSFYQLS--  211 (1081)
T ss_pred             EeeecCCCc-EEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe-ccceeEEEEec--
Confidence            999999999 9999999999999874 455444443   467899999999964     3677777 67888888776  


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                      ++.+..-..  ..-...++.+-++|.|+..|+.|+.+++|--+.             ..+.++......|+.++.  .|+
T Consensus       212 G~~Igk~r~--L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-------------vrLGTvg~~D~WIWtV~~--~PN  274 (1081)
T KOG1538|consen  212 GKQIGKDRA--LNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-------------VRLGTVGEQDSWIWTVQA--KPN  274 (1081)
T ss_pred             ceeeccccc--CCCCchhheeccCCcEEEEccCCCceEEEeecC-------------eEEeeccccceeEEEEEE--ccC
Confidence            333321111  123345678889999999999999999997665             455666666779999999  999


Q ss_pred             cccceeeEEeeecceeee
Q psy2305         315 ERDLLVADATCSGQITNV  332 (334)
Q Consensus       315 ~~~~~~~l~t~~~d~~i~  332 (334)
                      +    +.++.|+.||++.
T Consensus       275 s----Q~v~~GCqDGTiA  288 (1081)
T KOG1538|consen  275 S----QYVVVGCQDGTIA  288 (1081)
T ss_pred             C----ceEEEEEccCeee
Confidence            9    9999999999974

>KOG0307|consensus

Probab=99.91  E-value=3.4e-24  Score=189.28  Aligned_cols=249  Identities=19%  Similarity=0.259  Sum_probs=190.5

Q ss_pred             eeEEEEcCCCcE----EEEeeCCCeEEEEECCCC---CceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC
Q psy2305           4 EEDVDEAPDGTC----LLTNSNDNHLRTFDLPSE---LHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF   76 (334)
Q Consensus         4 V~~~~~sp~~~~----l~~~~~d~~v~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~   76 (334)
                      -+.++|.+.|..    ||.|..||.|.+||...-   ...           ....... .|.+.|..+.|++.      .
T Consensus        67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~-----------~~la~~~-~h~G~V~gLDfN~~------q  128 (1049)
T KOG0307|consen   67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASE-----------EVLATKS-KHTGPVLGLDFNPF------Q  128 (1049)
T ss_pred             ceeeeecccCCCccceeeccccCCceEEecchhhccCcch-----------HHHhhhc-ccCCceeeeecccc------C
Confidence            467899987765    888889999999998763   111           0112233 46688988888653      4


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCE-EEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          77 TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK-IYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        77 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      +++||+|+.||.|.|||+..-+.-....   .......|.+++|+..-.+ |++++ +|.+.|||++. .+.+...  ..
T Consensus       129 ~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~l--s~  202 (1049)
T KOG0307|consen  129 GNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKL--SD  202 (1049)
T ss_pred             CceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhhccCCCCCceeccccC-CCccccc--cc
Confidence            5699999999999999998755444332   1122238999999987654 55666 88999999997 3444421  12


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCC---eEEEEECCCC-CceEeeccCCCCeEEEEEccCC-cEEEeeecCCCeEEEE
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSK---IIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICW  229 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iw  229 (334)
                      ......+..++|+|+..+.+++++.|.   .|.+||+|.. .+++++++|...|.++.|.+.+ ++|++++ .|+.|.+|
T Consensus       203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~ii~w  281 (1049)
T KOG0307|consen  203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRIICW  281 (1049)
T ss_pred             CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCeeEe
Confidence            222345789999999987888887664   6999999864 6788889999999999999966 7888998 89999999


Q ss_pred             EccCCCccceeecccccCCceEEEEecCCCc-eEEeeecCCcEEEEeCCCCC
Q psy2305         230 DLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~  280 (334)
                      +.++ ++.+..+...  ..++..+.|.|... .+++++.||.|.|+.+....
T Consensus       282 N~~t-gEvl~~~p~~--~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  282 NPNT-GEVLGELPAQ--GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cCCC-ceEeeecCCC--CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9998 8878877753  67888899999775 78888999999999998764

>KOG0270|consensus

Probab=99.91  E-value=3.9e-22  Score=159.40  Aligned_cols=236  Identities=15%  Similarity=0.200  Sum_probs=168.4

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCee---eEEE-------------cCccccccccceeEEEEcCCC-CEEEEee-CCcEE
Q psy2305          75 GFTSYFLCSSMYAPIHLWDSVGGEI---KATY-------------RPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVK  136 (334)
Q Consensus        75 ~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~-------------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~  136 (334)
                      ..|+++|.|..|..|.|||+.--..   ...+             +.+....+...|..++|+..- +.|++|+ |.+|+
T Consensus       190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK  269 (463)
T ss_pred             CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence            3578999999999999999742110   0000             111111222267788888875 4566787 99999


Q ss_pred             EEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCc-E
Q psy2305         137 IFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGI-L  215 (334)
Q Consensus       137 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~  215 (334)
                      +||+.+ +++..    .+..|.+.|.++.|+|....+|++|+.|+++.+.|.|........-...+.|-.++|.|... .
T Consensus       270 lWD~~~-g~p~~----s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~  344 (463)
T KOG0270|consen  270 LWDVDT-GKPKS----SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENS  344 (463)
T ss_pred             EEEcCC-CCcce----ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCcee
Confidence            999998 66655    57789999999999999887999999999999999985333222222467899999999665 4


Q ss_pred             EEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCCCCCCCCcccccccc
Q psy2305         216 LFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL  294 (334)
Q Consensus       216 l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  294 (334)
                      ++++. .||+++-+|+|..++++.++..|  ...+.++++++.- .++++++.|+.|++|++.....          +..
T Consensus       345 f~~~t-ddG~v~~~D~R~~~~~vwt~~AH--d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~----------~~v  411 (463)
T KOG0270|consen  345 FFVST-DDGTVYYFDIRNPGKPVWTLKAH--DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP----------KSV  411 (463)
T ss_pred             EEEec-CCceEEeeecCCCCCceeEEEec--cCCcceEEecCCCCcceeeccccceEEEEeecCCCC----------ccc
Confidence            55666 89999999999988999999988  5577777777754 5788999999999999876421          111


Q ss_pred             ceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         295 YKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       295 ~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ..-.---+...++++  .|+-+   -.||.||..+.+.+
T Consensus       412 ~~~~~~~~rl~c~~~--~~~~a---~~la~GG~k~~~~v  445 (463)
T KOG0270|consen  412 KEHSFKLGRLHCFAL--DPDVA---FTLAFGGEKAVLRV  445 (463)
T ss_pred             ccccccccceeeccc--CCCcc---eEEEecCccceEEE
Confidence            111111123566677  77762   45777877775543

>KOG2096|consensus

Probab=99.91  E-value=3.9e-22  Score=153.23  Aligned_cols=248  Identities=13%  Similarity=0.106  Sum_probs=173.4

Q ss_pred             eeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeee--EEEcCccccccccceeEEEEcCCCCEEEE
Q psy2305          52 TLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK--ATYRPYNQVDEVTHAYSLAFSLDGNKIYA  129 (334)
Q Consensus        52 ~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  129 (334)
                      .+. +|...|++++|       +.||++|++++.|+.|++|+++.-...  +.++..-..+   -.+.+.|.||-+-++.
T Consensus        81 ~LK-gH~~~vt~~~F-------sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~s~vv  149 (420)
T KOG2096|consen   81 VLK-GHKKEVTDVAF-------SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCKSVVV  149 (420)
T ss_pred             hhh-ccCCceeeeEE-------cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcceEEE
Confidence            344 46688988877       789999999999999999998753221  1111111111   4689999999887764


Q ss_pred             e--eCCcEEEEEcCCC--CCeee-eecc----cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC
Q psy2305         130 G--FLSEVKIFSTDRP--GRECV-SRNL----KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH  200 (334)
Q Consensus       130 ~--~d~~i~i~d~~~~--~~~~~-~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  200 (334)
                      .  ....+++|.+...  +.... ..+.    ....|...+..+-...++. +|++++.|..|.+|+++ |+.+..+...
T Consensus       150 ~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq~L~~idtn  227 (420)
T KOG2096|consen  150 SVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQLLQSIDTN  227 (420)
T ss_pred             EEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-Cceeeeeccc
Confidence            4  3788999987641  11111 0000    1234566777787778888 99999999999999998 8888888776


Q ss_pred             CCCeEEEEEccCCcEEEeeecCCCeEEEEEccC--CC-----ccceeecccccCCceEEEEecCCCceEEeeecCCcEEE
Q psy2305         201 NGGITHLEFSSNGILLFSGARKDCEIICWDLRN--PG-----CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSI  273 (334)
Q Consensus       201 ~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~--~~-----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i  273 (334)
                      ...-+..+.||+|++|++++ ....+++|.+--  .+     ..+..+++|  ...+..++|+++...+++.+.||+++|
T Consensus       228 q~~n~~aavSP~GRFia~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH--~saV~~~aFsn~S~r~vtvSkDG~wri  304 (420)
T KOG2096|consen  228 QSSNYDAAVSPDGRFIAVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGH--QSAVLAAAFSNSSTRAVTVSKDGKWRI  304 (420)
T ss_pred             cccccceeeCCCCcEEEEec-CCCCceEEEEEeccCcchhhhhhhheeccc--hhheeeeeeCCCcceeEEEecCCcEEE
Confidence            66777889999999999999 899999999742  11     123455666  677899999999999999999999999


Q ss_pred             EeCCCCCCCCCCCcccccccccee----cccccccceeeeccCCCcccceeeEEeee
Q psy2305         274 WNVNTSNLPSSPYEESVQEPLYKF----SAHQDCTNGVRWKHHKFERDLLVADATCS  326 (334)
Q Consensus       274 wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~s~~~~~~~~~l~t~~  326 (334)
                      ||.+-.-.   ..++  ++.+...    ....+....+..  +|.+    +.||.+.
T Consensus       305 wdtdVrY~---~~qD--pk~Lk~g~~pl~aag~~p~RL~l--sP~g----~~lA~s~  350 (420)
T KOG2096|consen  305 WDTDVRYE---AGQD--PKILKEGSAPLHAAGSEPVRLEL--SPSG----DSLAVSF  350 (420)
T ss_pred             eeccceEe---cCCC--chHhhcCCcchhhcCCCceEEEe--CCCC----cEEEeec
Confidence            99763200   0000  0222222    112223347888  8998    8777654

>KOG1007|consensus

Probab=99.91  E-value=4.9e-22  Score=150.67  Aligned_cols=257  Identities=17%  Similarity=0.144  Sum_probs=185.7

Q ss_pred             CceeEEEEcCC-CcEEEEeeCC-------CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEeccccee
Q psy2305           2 DIEEDVDEAPD-GTCLLTNSND-------NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSI   73 (334)
Q Consensus         2 d~V~~~~~sp~-~~~l~~~~~d-------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   73 (334)
                      ..|+.++-+|- .+.|+|+..+       -.+.||.+......     +.....+.+..+...+-+.|.++.|.      
T Consensus        64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-----S~~~tlE~v~~Ldteavg~i~cvew~------  132 (370)
T KOG1007|consen   64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-----SNSSTLECVASLDTEAVGKINCVEWE------  132 (370)
T ss_pred             cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-----cccchhhHhhcCCHHHhCceeeEEEc------
Confidence            35788888884 4456665432       24778998765432     11222334445554444688898885      


Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCee-eEEEcCccccccccceeEEEEcC--CCCEEEEeeCCcEEEEEcCCCCCeeeee
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEI-KATYRPYNQVDEVTHAYSLAFSL--DGNKIYAGFLSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~d~~i~i~d~~~~~~~~~~~  150 (334)
                       |++..+++-. |..|.+|+++.+.. ...+............++-+|+|  +++.+++.+|+++..||+++. +.... 
T Consensus       133 -Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~-~~~~s-  208 (370)
T KOG1007|consen  133 -PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTM-KKNNS-  208 (370)
T ss_pred             -CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccch-hhhcc-
Confidence             5888888776 78899999987765 44443322222122678889998  789999999999999999973 33332 


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccC-CcEEEeeecCCCeEEE
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSN-GILLFSGARKDCEIIC  228 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~d~~i~i  228 (334)
                        .-..|...|..+.|+|+.+++|++++.||.|++||.+.. .+++++.+|...|.++.|+|. .++|++++ .|..+.+
T Consensus       209 --I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~-SDs~V~L  285 (370)
T KOG1007|consen  209 --IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG-SDSAVNL  285 (370)
T ss_pred             --hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC-CCceeEE
Confidence              456788899999999999989999999999999999764 688999999999999999994 46788888 8999999


Q ss_pred             EEccCCCc----------------------------cceeecccccCCceEEEEecCCCc-eEEeeecCCcEEEEeCCC
Q psy2305         229 WDLRNPGC----------------------------ILHTFPRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       229 wd~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~  278 (334)
                      |....-..                            .+.++..  +...+.+++||.-.. .+|+-+.||++.|=.+..
T Consensus       286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             EeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            97643110                            1122333  356788999988554 567789999998877654

>KOG0290|consensus

Probab=99.91  E-value=8.8e-22  Score=149.43  Aligned_cols=294  Identities=13%  Similarity=0.139  Sum_probs=202.6

Q ss_pred             ceeEEEEcC--C-CcEEEEee----CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305           3 IEEDVDEAP--D-GTCLLTNS----NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         3 ~V~~~~~sp--~-~~~l~~~~----~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~   75 (334)
                      ++.++.||.  + ..+||.|+    ..+.|.|-.+......            ....-...|.-+++.+-|.|.....-|
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e------------~~~~a~fd~~YP~tK~~wiPd~~g~~p  113 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGE------------LVEDANFDHPYPVTKLMWIPDSKGVYP  113 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCc------------eeccCCCCCCCCccceEecCCccccCc
Confidence            356788883  3 44788887    4567888766532221            111112345677888888774433333


Q ss_pred             CCcEEEEeeCCCcEEEEeCCC--Cee--eEEEcCccccccccceeEEEEcCCC-CEEEEee-CCcEEEEEcCCC-CCeee
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVG--GEI--KATYRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFSTDRP-GRECV  148 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~--~~~--~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~-~~~~~  148 (334)
                        ++||+++  ..+++|.+..  .+.  ...+..+.......+++++.|+.-. +++.+++ |-+..|||+++. ...++
T Consensus       114 --dlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vk  189 (364)
T KOG0290|consen  114 --DLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVK  189 (364)
T ss_pred             --chhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccccee
Confidence              3566654  4699998763  221  2223333333344489999999854 5566777 999999999973 11133


Q ss_pred             eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee---ccCCCCeEEEEEccC-CcEEEeeecCCC
Q psy2305         149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL---KGHNGGITHLEFSSN-GILLFSGARKDC  224 (334)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~-~~~l~~~~~~d~  224 (334)
                      .   .+-.|...|..++|...+...||+.+.||.+++||++..+--..+   .....+...++|++. -+++++-.-...
T Consensus       190 T---QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~  266 (364)
T KOG0290|consen  190 T---QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN  266 (364)
T ss_pred             e---EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence            3   678899999999999988879999999999999999876543333   223567888999874 457777652456


Q ss_pred             eEEEEEccCCCccceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccc
Q psy2305         225 EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDC  303 (334)
Q Consensus       225 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (334)
                      .|.|.|++.+..++.++.+|  ...+..++|.|.. ..|++++.|.++.+||+.....      +....++..+. -.+.
T Consensus       267 ~V~iLDiR~P~tpva~L~~H--~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~------~~~~dPilay~-a~~E  337 (364)
T KOG0290|consen  267 KVVILDIRVPCTPVARLRNH--QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR------ENGEDPILAYT-AGGE  337 (364)
T ss_pred             eEEEEEecCCCcceehhhcC--cccccceEecCCCCceeeecCCcceEEEEecccccc------cCCCCchhhhh-ccce
Confidence            79999999989999999988  6778889999965 6889999999999999987522      01113344444 3567


Q ss_pred             cceeeeccCCCcccceeeEEeeecce
Q psy2305         304 TNGVRWKHHKFERDLLVADATCSGQI  329 (334)
Q Consensus       304 i~~~~~~~s~~~~~~~~~l~t~~~d~  329 (334)
                      |+.+.|  +|..+   ..++.+....
T Consensus       338 VNqi~W--s~~~~---Dwiai~~~kk  358 (364)
T KOG0290|consen  338 VNQIQW--SSSQP---DWIAICFGKK  358 (364)
T ss_pred             eeeeee--cccCC---CEEEEEecCe
Confidence            999999  86653   6777776543

>KOG4378|consensus

Probab=99.90  E-value=9.3e-23  Score=165.28  Aligned_cols=220  Identities=13%  Similarity=0.137  Sum_probs=177.5

Q ss_pred             EEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC
Q psy2305           6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM   85 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~   85 (334)
                      |++......|+++|+..+.|+|||++.....              +.+. .|...|+++.|       +-...+||+++.
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h--------------r~lk-dh~stvt~v~Y-------N~~DeyiAsvs~  141 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAKLIH--------------RFLK-DHQSTVTYVDY-------NNTDEYIASVSD  141 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHHHHh--------------hhcc-CCcceeEEEEe-------cCCcceeEEecc
Confidence            4444445579999999999999999955443              2333 45688998888       447789999999


Q ss_pred             CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCCeeeeecccccccccceEE
Q psy2305          86 YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSA  163 (334)
Q Consensus        86 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~  163 (334)
                      .|.|.|..+.++.....|......    .|.-+.|+|..++++ +++ +|.|.+||+.. ..+...   ....|..+...
T Consensus       142 gGdiiih~~~t~~~tt~f~~~sgq----svRll~ys~skr~lL~~asd~G~VtlwDv~g-~sp~~~---~~~~HsAP~~g  213 (673)
T KOG4378|consen  142 GGDIIIHGTKTKQKTTTFTIDSGQ----SVRLLRYSPSKRFLLSIASDKGAVTLWDVQG-MSPIFH---ASEAHSAPCRG  213 (673)
T ss_pred             CCcEEEEecccCccccceecCCCC----eEEEeecccccceeeEeeccCCeEEEEeccC-CCcccc---hhhhccCCcCc
Confidence            999999999998877777653221    678999999988777 445 89999999985 333333   46789999999


Q ss_pred             EEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecc
Q psy2305         164 IAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR  243 (334)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~  243 (334)
                      ++|+|....+|++.+.|..|.+||.+..+....+. ...+...++|.++|.+|+.|+ ..|.|..||++....++..+..
T Consensus       214 icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~-s~G~~i~YD~R~~k~Pv~v~sa  291 (673)
T KOG4378|consen  214 ICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGN-SKGELIAYDMRSTKAPVAVRSA  291 (673)
T ss_pred             ceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeec-CCceEEEEecccCCCCceEeee
Confidence            99999988788999999999999998877766665 567889999999999999999 8999999999987888888887


Q ss_pred             cccCCceEEEEecCCC
Q psy2305         244 QVSTNQRVYFDLTSCS  259 (334)
Q Consensus       244 ~~~~~~~~~~~~s~~~  259 (334)
                      |  ...+.+++|-|..
T Consensus       292 h--~~sVt~vafq~s~  305 (673)
T KOG4378|consen  292 H--DASVTRVAFQPSP  305 (673)
T ss_pred             c--ccceeEEEeeecc
Confidence            7  5557777776653

>KOG1539|consensus

Probab=99.90  E-value=8.4e-22  Score=168.80  Aligned_cols=241  Identities=12%  Similarity=0.165  Sum_probs=186.2

Q ss_pred             CceeEEEEcCC-----CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeee----eceeEEEEEEecccce
Q psy2305           2 DIEEDVDEAPD-----GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK----EGGIIYDYVWYPKTSS   72 (334)
Q Consensus         2 d~V~~~~~sp~-----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~   72 (334)
                      .+|..+++.-.     .+.++..-.+...+.|++.....-+             ..+...    ....+.+       ++
T Consensus       396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~-------------~~L~~~~~~~~~~~~~a-------v~  455 (910)
T KOG1539|consen  396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR-------------HVLDPKRFKKDDINATA-------VC  455 (910)
T ss_pred             CcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc-------------EEecCccccccCcceEE-------EE
Confidence            45566666542     2345555567789999998766521             122111    2233444       44


Q ss_pred             ecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEc-CccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeee
Q psy2305          73 IDGFTSYFLCSSMYAPIHLWDSVGGEIKATYR-PYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        73 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~  150 (334)
                      .++-|++.+.|...|.|-+|++++|-....+. ...|.   ++|+.++...-++.+++++ +|.+++||...  +.+.. 
T Consensus       456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~---~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~--k~l~~-  529 (910)
T KOG1539|consen  456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHK---GEVTGLAVDGTNRLLVSAGADGILKFWDFKK--KVLKK-  529 (910)
T ss_pred             EeccCceEEEeccCCeEEEEEcccCeeecccccCcccc---CceeEEEecCCCceEEEccCcceEEEEecCC--cceee-
Confidence            47899999999999999999999998888773 11222   2899999999999999876 99999999985  33221 


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                         .-.-...+.++..+.... +++++..|-.|+++|..+.+.++.|.+|.+.|++++|||||++|++++ .|++|++||
T Consensus       530 ---~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas-mD~tIr~wD  604 (910)
T KOG1539|consen  530 ---SLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS-MDSTIRTWD  604 (910)
T ss_pred             ---eeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee-cCCcEEEEe
Confidence               222345678888888888 999999999999999999999999999999999999999999999999 999999999


Q ss_pred             ccCCCccceeecccccCCceEEEEecCCCceEEeeecC-CcEEEEeCC
Q psy2305         231 LRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-GDLSIWNVN  277 (334)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~i~iwd~~  277 (334)
                      +.+ +.++-.+.   .+....++.|+|+|.+||+...| .-|++|--.
T Consensus       605 lpt-~~lID~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  605 LPT-GTLIDGLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             ccC-cceeeeEe---cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            998 66555444   36677889999999999999887 679999643

>KOG0321|consensus

Probab=99.90  E-value=9.5e-22  Score=163.86  Aligned_cols=255  Identities=15%  Similarity=0.177  Sum_probs=176.4

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|..+.|-|....|++++.|.++++||+++.....             ..+..+|...|.+++|.|.      +...|+
T Consensus       101 nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G-------------~~~~~GH~~SvkS~cf~~~------n~~vF~  161 (720)
T KOG0321|consen  101 NAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG-------------GRLNLGHTGSVKSECFMPT------NPAVFC  161 (720)
T ss_pred             ceeEeeccCCCceeEEEccCCceeeeeeeccceeec-------------ceeecccccccchhhhccC------CCccee
Confidence            578899999977789999999999999999888752             1234457788988888664      556899


Q ss_pred             EeeCCCcEEEEeCCCCee-------eEEEcCccc---------------cccccceeE---EEEcCCCCEEEEee--CCc
Q psy2305          82 CSSMYAPIHLWDSVGGEI-------KATYRPYNQ---------------VDEVTHAYS---LAFSLDGNKIYAGF--LSE  134 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~-------~~~~~~~~~---------------~~~~~~v~~---~~~~~~~~~l~~~~--d~~  134 (334)
                      +|++||.|.|||+.-...       .+....++.               ......|.+   +.+..|...|++++  |+.
T Consensus       162 tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~  241 (720)
T KOG0321|consen  162 TGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADST  241 (720)
T ss_pred             eccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcc
Confidence            999999999999853220       000000000               001113333   45556777788654  999


Q ss_pred             EEEEEcCCCCCeeeeecc---ccccc---ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC--CceEeeccCCCCe--
Q psy2305         135 VKIFSTDRPGRECVSRNL---KPWFR---KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG--RPLFFLKGHNGGI--  204 (334)
Q Consensus       135 i~i~d~~~~~~~~~~~~~---~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i--  204 (334)
                      |++||++.........+.   .+..|   ...+.++.....|. +|.+.+.|+.|++|++.+-  .++..+.++...-  
T Consensus       242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~  320 (720)
T KOG0321|consen  242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFY  320 (720)
T ss_pred             eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCcCchhhccCcccceee
Confidence            999999974333322211   12222   34577888888888 5555666999999999764  3444444443211  


Q ss_pred             EEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCC
Q psy2305         205 THLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       205 ~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ..-..+|++.+|++|+ .|...++|.+.........+.+|  ...+.+++|.|.. .-+++++.|..++||++..+
T Consensus       321 vks~lSpd~~~l~SgS-sd~~ayiw~vs~~e~~~~~l~Gh--t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  321 VKSELSPDDCSLLSGS-SDEQAYIWVVSSPEAPPALLLGH--TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             eeeecCCCCceEeccC-CCcceeeeeecCccCChhhhhCc--ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            1223589999999999 89999999999877777777777  6678888887743 33556699999999999665

>KOG0322|consensus

Probab=99.90  E-value=1.6e-22  Score=151.34  Aligned_cols=280  Identities=12%  Similarity=0.029  Sum_probs=191.4

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|+++.|-.+++ |++|...|.|++|.+.+....              ..++.++...|..+.-       -|+ ..+.
T Consensus        15 ~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~--------------~~~r~~g~~~it~lq~-------~p~-d~l~   71 (323)
T KOG0322|consen   15 SSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL--------------PLIRLFGRLFITNLQS-------IPN-DSLD   71 (323)
T ss_pred             chheehhhccchh-hhcccccceEEEEEeecCccc--------------hhhhhhccceeeceee-------cCC-cchh
Confidence            4678888887775 889999999999999998866              4666667778877765       344 5688


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-----CCC----EEEEeeC--CcEEEEEcCCCCCeeeee
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-----DGN----KIYAGFL--SEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~----~l~~~~d--~~i~i~d~~~~~~~~~~~  150 (334)
                      +-++|..+.+|++..+..+..-..        .++++.|.+     .++    .++.-+.  ..+++-|.....+.... 
T Consensus        72 tqgRd~~L~lw~ia~s~~i~i~Si--------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~-  142 (323)
T KOG0322|consen   72 TQGRDPLLILWTIAYSAFISIHSI--------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIA-  142 (323)
T ss_pred             hcCCCceEEEEEccCcceEEEeee--------eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEcc-
Confidence            889999999999987655433221        334444433     221    2222111  12333333221111110 


Q ss_pred             cccccccccceEEEEEcCC-CC-cEEEEeecCCeEEEEECCCCC----------ceEeeccCCCCeEEEEEccCCcEEEe
Q psy2305         151 NLKPWFRKNIVSAIAINPV-HP-DICALGTYSKIIGLFSDSDGR----------PLFFLKGHNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~  218 (334)
                      +-......+.+++..+..+ +. -+++.|.++|.+.+||+.++.          .+.....|..+|.++.|.+.-..=++
T Consensus       143 dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGis  222 (323)
T KOG0322|consen  143 DDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGIS  222 (323)
T ss_pred             CchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcC
Confidence            0012234566777775433 22 255678889999999998873          33334568899999999876555577


Q ss_pred             eecCCCeEEEEEccCC-CccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee
Q psy2305         219 GARKDCEIICWDLRNP-GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF  297 (334)
Q Consensus       219 ~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  297 (334)
                      ++ .+..+..|.++.. +..............+..+..-||++.+|+++.|++|++|+.++.            .++..+
T Consensus       223 gg-a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl------------~pLAVL  289 (323)
T KOG0322|consen  223 GG-ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL------------NPLAVL  289 (323)
T ss_pred             CC-ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC------------Cchhhh
Confidence            77 7888999998753 221111111111223445667899999999999999999999998            889999


Q ss_pred             cccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         298 SAHQDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       298 ~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      +.|.+.|++++|  +|+.    .++|++|.|++|-
T Consensus       290 kyHsagvn~vAf--spd~----~lmAaaskD~rIS  318 (323)
T KOG0322|consen  290 KYHSAGVNAVAF--SPDC----ELMAAASKDARIS  318 (323)
T ss_pred             hhhhcceeEEEe--CCCC----chhhhccCCceEE
Confidence            999999999999  9999    8999999999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.90  E-value=4.1e-20  Score=154.71  Aligned_cols=273  Identities=12%  Similarity=0.093  Sum_probs=170.8

Q ss_pred             EEeeCCCeEEEEECCCC-CceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee-CCCcEEEEeC
Q psy2305          17 LTNSNDNHLRTFDLPSE-LHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS-MYAPIHLWDS   94 (334)
Q Consensus        17 ~~~~~d~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~-~d~~i~iwd~   94 (334)
                      ++...++.|++|++.+. +..            ....+.  ..+       .|..++++|++++|++++ .++.|.+|++
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~------------~~~~~~--~~~-------~~~~l~~spd~~~lyv~~~~~~~i~~~~~   64 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALT------------LLQVVD--VPG-------QVQPMVISPDKRHLYVGVRPEFRVLSYRI   64 (330)
T ss_pred             EEcCCCCCEEEEEECCCCcee------------eeeEEe--cCC-------CCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence            33467899999999643 321            001111  112       234466799999887664 5788999998


Q ss_pred             CC-CeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCC
Q psy2305          95 VG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHP  171 (334)
Q Consensus        95 ~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  171 (334)
                      .. ++. ..........   .+..++|+|++++|+++.  ++.|.+|+++..+......  ....+.....+++++|+++
T Consensus        65 ~~~g~l-~~~~~~~~~~---~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~--~~~~~~~~~~~~~~~p~g~  138 (330)
T PRK11028         65 ADDGAL-TFAAESPLPG---SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI--QIIEGLEGCHSANIDPDNR  138 (330)
T ss_pred             CCCCce-EEeeeecCCC---CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce--eeccCCCcccEeEeCCCCC
Confidence            63 332 1111111111   457899999999998775  8999999997533221110  1112223467789999999


Q ss_pred             cEE-EEeecCCeEEEEECCCCCceE-------eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC-Cc--ccee
Q psy2305         172 DIC-ALGTYSKIIGLFSDSDGRPLF-------FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP-GC--ILHT  240 (334)
Q Consensus       172 ~~l-~~~~~dg~i~i~d~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~-~~--~~~~  240 (334)
                       ++ ++...++.|.+||+.+...+.       ... .......++|+|+|++++++...++.|.+|+++.. +.  ....
T Consensus       139 -~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~  216 (330)
T PRK11028        139 -TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT  216 (330)
T ss_pred             -EEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence             55 555567999999997643221       111 12345789999999999988834999999999742 22  1222


Q ss_pred             eccc----ccCCceEEEEecCCCceEEeeec-CCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         241 FPRQ----VSTNQRVYFDLTSCSNYLLSGNT-NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       241 ~~~~----~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      +...    ........+.++|+|++++++.. ++.|.+|++......        .+.+..... ......+.+  +|++
T Consensus       217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~--------~~~~~~~~~-~~~p~~~~~--~~dg  285 (330)
T PRK11028        217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV--------LSFEGHQPT-ETQPRGFNI--DHSG  285 (330)
T ss_pred             EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe--------EEEeEEEec-cccCCceEE--CCCC
Confidence            2211    01123345789999999998854 689999999654210        012222221 124578999  9999


Q ss_pred             ccceeeEEeeec-ceeeee
Q psy2305         316 RDLLVADATCSG-QITNVK  333 (334)
Q Consensus       316 ~~~~~~l~t~~~-d~~i~~  333 (334)
                          ++|+++.. +++|.+
T Consensus       286 ----~~l~va~~~~~~v~v  300 (330)
T PRK11028        286 ----KYLIAAGQKSHHISV  300 (330)
T ss_pred             ----CEEEEEEccCCcEEE
Confidence                88887765 776654

>KOG1034|consensus

Probab=99.90  E-value=3.2e-22  Score=154.18  Aligned_cols=247  Identities=16%  Similarity=0.145  Sum_probs=182.9

Q ss_pred             eeEEEEcCC----CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           4 EEDVDEAPD----GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         4 V~~~~~sp~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      ...++|+-|    ..+||.|+.-|.|+|.|+.+++..              ..+. +|+..|+.+.++|.      +.++
T Consensus        92 fytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~--------------~~~~-ghG~sINeik~~p~------~~ql  150 (385)
T KOG1034|consen   92 FYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS--------------KNYR-GHGGSINEIKFHPD------RPQL  150 (385)
T ss_pred             eEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc--------------ccee-ccCccchhhhcCCC------CCcE
Confidence            456677653    458999999999999999998876              3444 47789999999774      5579


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCC--------------
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPG--------------  144 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~--------------  144 (334)
                      +++++.|..|++|+++++.++..+-+..  .+...|.++.|+++|.++++++ |.++++|++..+.              
T Consensus       151 vls~SkD~svRlwnI~~~~Cv~VfGG~e--gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~  228 (385)
T KOG1034|consen  151 VLSASKDHSVRLWNIQTDVCVAVFGGVE--GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPN  228 (385)
T ss_pred             EEEecCCceEEEEeccCCeEEEEecccc--cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCC
Confidence            9999999999999999999998887632  2223899999999999999887 9999999998311              


Q ss_pred             Cee-------eeecc--cccccccceEEEEEcCCCCcEEEEeecCCeEEEEEC-CCCCc-------------eEeeccCC
Q psy2305         145 REC-------VSRNL--KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSD-SDGRP-------------LFFLKGHN  201 (334)
Q Consensus       145 ~~~-------~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~-------------~~~~~~~~  201 (334)
                      +..       ...+.  +...|...|-|+.|--  + ++++-+-++.|..|.. +-++.             +..+.-..
T Consensus       229 ~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~  305 (385)
T KOG1034|consen  229 KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM  305 (385)
T ss_pred             CccCcCCccccccccccccccccchHHHHHHHh--h-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc
Confidence            000       00000  2234666777777765  4 8888888899999987 11111             22233333


Q ss_pred             CCeEEEE--EccCCcEEEeeecCCCeEEEEEccCCCc-cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305         202 GGITHLE--FSSNGILLFSGARKDCEIICWDLRNPGC-ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN  277 (334)
Q Consensus       202 ~~i~~~~--~~~~~~~l~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  277 (334)
                      ..|.-+.  |.|-+++|+.|. ..|.+++||++.... ...++..+.....+...+|+.||.+|+....|++|.-||..
T Consensus       306 c~iWfirf~~d~~~~~la~gn-q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  306 CDIWFIRFAFDPWQKMLALGN-QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cceEEEEEeecHHHHHHhhcc-CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            4455544  567788999999 899999999997333 23445555556778889999999999999999999999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.89  E-value=5.6e-20  Score=153.91  Aligned_cols=246  Identities=12%  Similarity=0.179  Sum_probs=160.1

Q ss_pred             eeEEEEcCCCcEEEEee-CCCeEEEEECCC-CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           4 EEDVDEAPDGTCLLTNS-NDNHLRTFDLPS-ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~-~d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ...++++|++++|++++ .++.|.+|++.. +...              ..-......       .|..++++|++++|+
T Consensus        37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~--------------~~~~~~~~~-------~p~~i~~~~~g~~l~   95 (330)
T PRK11028         37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT--------------FAAESPLPG-------SPTHISTDHQGRFLF   95 (330)
T ss_pred             CccEEECCCCCEEEEEECCCCcEEEEEECCCCceE--------------EeeeecCCC-------CceEEEECCCCCEEE
Confidence            56789999999987765 578899999873 3321              000000111       233466689999888


Q ss_pred             EeeC-CCcEEEEeCCC-Cee---eEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeee--ecc
Q psy2305          82 CSSM-YAPIHLWDSVG-GEI---KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVS--RNL  152 (334)
Q Consensus        82 ~~~~-d~~i~iwd~~~-~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~--~~~  152 (334)
                      +++. ++.|.+|++.+ +..   ...+...   .   .+..++++|++++++++.  ++.|.+||++..+.....  ...
T Consensus        96 v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~---~---~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~  169 (330)
T PRK11028         96 SASYNANCVSVSPLDKDGIPVAPIQIIEGL---E---GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV  169 (330)
T ss_pred             EEEcCCCeEEEEEECCCCCCCCceeeccCC---C---cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCce
Confidence            8764 78999999864 322   2222211   1   467889999999997654  799999999863322110  000


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeec-CCeEEEEECCC--CC--ceEeeccC------CCCeEEEEEccCCcEEEeeec
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTY-SKIIGLFSDSD--GR--PLFFLKGH------NGGITHLEFSSNGILLFSGAR  221 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~--~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~  221 (334)
                      .. ........++|+|+++ +++++.. ++.|.+|+++.  ++  .+..+..+      ......+.++|++++|+++.+
T Consensus       170 ~~-~~g~~p~~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~  247 (330)
T PRK11028        170 TT-VEGAGPRHMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR  247 (330)
T ss_pred             ec-CCCCCCceEEECCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC
Confidence            11 1123467899999999 7776665 89999999973  22  23333221      112346889999999999875


Q ss_pred             CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeec-CCcEEEEeCCC
Q psy2305         222 KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT-NGDLSIWNVNT  278 (334)
Q Consensus       222 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~  278 (334)
                      .++.|.+|++...+..+..............+.++|+|++|+++.. +++|.+|+++.
T Consensus       248 ~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        248 TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            6899999999763332222221111223456889999999998775 88999998753

>KOG0649|consensus

Probab=99.89  E-value=3.4e-20  Score=137.55  Aligned_cols=280  Identities=13%  Similarity=0.101  Sum_probs=185.2

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCccee-eeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYT-LKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .|.+-+++|.+++|++|..+|.|.+..+.+.....      ...+.-... ....|.++++.++|+         .++|+
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s------a~~~gk~~iv~eqahdgpiy~~~f~---------d~~Ll   76 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS------AEPPGKLKIVPEQAHDGPIYYLAFH---------DDFLL   76 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc------cCCCCCcceeeccccCCCeeeeeee---------hhhee
Confidence            35667899999999999999999999987543321      111111122 225577999999983         45677


Q ss_pred             EeeCCCcEEEEeCCCCee------eEEEcCc--cccccccceeEEEEcCCCCEEE-EeeCCcEEEEEcCCCCCeeeeecc
Q psy2305          82 CSSMYAPIHLWDSVGGEI------KATYRPY--NQVDEVTHAYSLAFSLDGNKIY-AGFLSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~------~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      +|+ ||.|+=|.......      +...+..  ...-+...|++|...|..+-++ +|+|+.++-||+++ ++...    
T Consensus        77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~-G~i~r----  150 (325)
T KOG0649|consen   77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLED-GRIQR----  150 (325)
T ss_pred             ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecC-CEEEE----
Confidence            776 69999886543221      1111111  1122334789999998765554 56699999999997 55544    


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC----------CCCeEEEEEccCCcEEEeeecC
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH----------NGGITHLEFSSNGILLFSGARK  222 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~~  222 (334)
                      .+.+|.+.+.++.--.... .+++|++||++++||.++++.+..+...          ...|.+++-  +..+|+.|+  
T Consensus       151 ~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg--  225 (325)
T KOG0649|consen  151 EYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG--  225 (325)
T ss_pred             EEcCCcceeeeeeecccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC--
Confidence            7899999999999844444 6999999999999999999988877432          123555554  455888776  


Q ss_pred             CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc
Q psy2305         223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD  302 (334)
Q Consensus       223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (334)
                      ...+.+|.++. ..+...+.-   ...+-.+.|.  .+.++++++.+.|.-|.+..-             ..........
T Consensus       226 Gp~lslwhLrs-se~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv-------------l~a~ip~~s~  286 (325)
T KOG0649|consen  226 GPKLSLWHLRS-SESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLNGV-------------LQANIPVEST  286 (325)
T ss_pred             CCceeEEeccC-CCceEEEec---ccceeEeeee--cceEEEeccccceeeeeeccE-------------EEEeccCCcc
Confidence            78899999998 555555553   3334445554  457777887888999988762             2222332233


Q ss_pred             ccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         303 CTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       303 ~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      ..++..|.-+| -    ++|-.++....+-
T Consensus       287 ~c~s~s~~~~p-~----k~~s~ag~s~~~~  311 (325)
T KOG0649|consen  287 ACYSASWQTSP-I----KFISIAGFSNKLH  311 (325)
T ss_pred             ceeeecccCCc-e----EEEEecccceeee
Confidence            45556662233 2    4566666555543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=5.6e-19  Score=153.19  Aligned_cols=279  Identities=25%  Similarity=0.347  Sum_probs=207.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCC-ceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-E
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSEL-HCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-Y   79 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~   79 (334)
                      +.+.++.|.+.+..++.++.|+.+.+|+..... ..              ..+...+...+..+.+     . ++++. .
T Consensus        66 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-----~-~~~~~~~  125 (466)
T COG2319          66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI--------------KSLEGLHDSSVSKLAL-----S-SPDGNSI  125 (466)
T ss_pred             ceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE--------------EEEeccCCCceeeEEE-----E-CCCcceE
Confidence            468899999999999999999999999998886 32              2333222223444333     1 44555 4


Q ss_pred             EEEeeC-CCcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeeccccc
Q psy2305          80 FLCSSM-YAPIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        80 l~~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      ++..+. |+.+.+|+... ......+..+..     .|..++|+|++..++.+.  ++.+++|++.. +....    .+.
T Consensus       126 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~  195 (466)
T COG2319         126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSE-----SVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-GKPLS----TLA  195 (466)
T ss_pred             EeccCCCCccEEEEEecCCCeEEEEEecCcc-----cEEEEEECCCCCEEEecCCCCCceEEEEcCC-CceEE----eec
Confidence            555444 89999999987 667777776555     788999999999887664  89999999986 44444    456


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE-eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF-FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP  234 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~  234 (334)
                      +|...+.+++|+|++...+++++.|+.|++||...+.... .+.+|.... ...|+|++.++++++ .|+.+++|+.+..
T Consensus       196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~~~~~~~  273 (466)
T COG2319         196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS-SDGTIRLWDLRSS  273 (466)
T ss_pred             cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec-CCCcEEEeeecCC
Confidence            6999999999999997234444899999999998777777 688888775 448999998888888 8999999999974


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee--cccccccceeeeccC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF--SAHQDCTNGVRWKHH  312 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~s  312 (334)
                      ......+..|  ...+.++.|+|++..+++++.|+.+.+|+....            ......  ..|...+..+.|  .
T Consensus       274 ~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~  337 (466)
T COG2319         274 SSLLRTLSGH--SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG------------KLLSSLTLKGHEGPVSSLSF--S  337 (466)
T ss_pred             CcEEEEEecC--CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC------------ceEEEeeecccCCceEEEEE--C
Confidence            4323334233  667888899998888888888988999988886            333333  367777899999  5


Q ss_pred             CCcccceeeEEee-ecceeee
Q psy2305         313 KFERDLLVADATC-SGQITNV  332 (334)
Q Consensus       313 ~~~~~~~~~l~t~-~~d~~i~  332 (334)
                      +++    ..++.+ ..|+.+.
T Consensus       338 ~~~----~~~~~~~~~d~~~~  354 (466)
T COG2319         338 PDG----SLLVSGGSDDGTIR  354 (466)
T ss_pred             CCC----CEEEEeecCCCcEE
Confidence            774    445554 5666554

>KOG1517|consensus

Probab=99.88  E-value=2.2e-20  Score=164.08  Aligned_cols=290  Identities=15%  Similarity=0.209  Sum_probs=199.8

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      -..+.|+|-...++++...-.|+|||.+.++....+....            .....|.++.+--     ..|..++++|
T Consensus      1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~------------~~~t~Vs~l~liN-----e~D~aLlLta 1129 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA------------FPDTRVSDLELIN-----EQDDALLLTA 1129 (1387)
T ss_pred             CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC------------CCCCccceeeeec-----ccchhheeee
Confidence            4567899988899999877799999999888653222111            1224566666532     3356689999


Q ss_pred             eCCCcEEEEeC-CCC----eeeEEEcCcccc---ccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          84 SMYAPIHLWDS-VGG----EIKATYRPYNQV---DEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        84 ~~d~~i~iwd~-~~~----~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      +.||.|+||+- .++    +.+.........   ..... .-+.|.....+|++++ -..|+|||... ...+..+   .
T Consensus      1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~-E~~~~di---P 1204 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHK-EQVVADI---P 1204 (1387)
T ss_pred             ccCceEEEecccccccCCceeEEeeccccccCccCCCCC-eeeehhhhCCeEEecCCeeEEEEEeccc-ceeEeec---c
Confidence            99999999953 222    233222221110   10001 3456776655666555 68999999997 5555542   3


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC---ceEeeccCCCC--eEEEEEccCCc-EEEeeecCCCeEEE
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR---PLFFLKGHNGG--ITHLEFSSNGI-LLFSGARKDCEIIC  228 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~~~d~~i~i  228 (334)
                      .+....++++.-+..+.+.++.|..||.|++||.+...   .+...+.|...  |..+.+.+.|- .|++|+ .+|.|++
T Consensus      1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs-~~G~I~~ 1283 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS-QDGDIQL 1283 (1387)
T ss_pred             cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec-cCCeEEE
Confidence            44566788877655543399999999999999997643   46667778877  99999998775 499999 8999999


Q ss_pred             EEccCC-Cccceeeccccc-CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccce---e-ccccc
Q psy2305         229 WDLRNP-GCILHTFPRQVS-TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK---F-SAHQD  302 (334)
Q Consensus       229 wd~~~~-~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~-~~~~~  302 (334)
                      ||++.. ......+..+.. +...+++..+++...+|+|+. +.|+||++....+.          .+..   + ....+
T Consensus      1284 ~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~----------~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1284 LDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLN----------IIKYNPGFMGQRIG 1352 (1387)
T ss_pred             EecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhc----------ccccCcccccCcCC
Confidence            999973 222223333322 224788999999999999998 89999999875321          1111   1 11234


Q ss_pred             ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         303 CTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       303 ~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+.+++|  +|..    -+||+|+.|.+|.+
T Consensus      1353 s~scL~F--HP~~----~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1353 SVSCLAF--HPHR----LLLAAGSADSTVSI 1377 (1387)
T ss_pred             Ccceeee--cchh----HhhhhccCCceEEE
Confidence            6799999  9999    89999999999876

>KOG1587|consensus

Probab=99.88  E-value=8.3e-20  Score=156.89  Aligned_cols=268  Identities=12%  Similarity=0.108  Sum_probs=194.0

Q ss_pred             CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCee--e
Q psy2305          23 NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEI--K  100 (334)
Q Consensus        23 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~--~  100 (334)
                      +.+.||++.....               +.+...-...|.+++|+|.      +..+++.|..+|.|.+||+..+..  .
T Consensus       222 ~~~~vW~~~~p~~---------------Pe~~~~~~s~v~~~~f~p~------~p~ll~gG~y~GqV~lWD~~~~~~~~~  280 (555)
T KOG1587|consen  222 GVLLVWSLKNPNT---------------PELVLESPSEVTCLKFCPF------DPNLLAGGCYNGQVVLWDLRKGSDTPP  280 (555)
T ss_pred             ceEEEEecCCCCC---------------ceEEEecCCceeEEEeccC------CcceEEeeccCceEEEEEccCCCCCCC
Confidence            4788999887732               2344445678999999774      556899999999999999987765  3


Q ss_pred             EEEcC--ccccccccceeEEEEcCCCC--EEEEee-CCcEEEEEcCCCCCeeeeeccccc-------ccccceEEEEEcC
Q psy2305         101 ATYRP--YNQVDEVTHAYSLAFSLDGN--KIYAGF-LSEVKIFSTDRPGRECVSRNLKPW-------FRKNIVSAIAINP  168 (334)
Q Consensus       101 ~~~~~--~~~~~~~~~v~~~~~~~~~~--~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~  168 (334)
                      ..+..  +.|..   +++.+.|..+-.  -+++++ ||.|..|+++.-..+.....+...       .....+++++|.+
T Consensus       281 s~ls~~~~sh~~---~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~  357 (555)
T KOG1587|consen  281 SGLSALEVSHSE---PVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP  357 (555)
T ss_pred             cccccccccCCc---CeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc
Confidence            32222  23333   889999977543  377766 999999998752222221111111       2234688999999


Q ss_pred             CCCcEEEEeecCCeEEEEECCC---C-----CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         169 VHPDICALGTYSKIIGLFSDSD---G-----RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       169 ~~~~~l~~~~~dg~i~i~d~~~---~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      ...+.+++|+++|.|.--....   .     +....+..|.++|+.+.++|-+..++..+ .|-+++||.......++..
T Consensus       358 ~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~-gDW~vriWs~~~~~~Pl~~  436 (555)
T KOG1587|consen  358 TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV-GDWTVRIWSEDVIASPLLS  436 (555)
T ss_pred             CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee-ccceeEeccccCCCCcchh
Confidence            9888999999999998744322   1     12334566889999999999887766666 6999999998843666666


Q ss_pred             ecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccce
Q psy2305         241 FPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLL  319 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~  319 (334)
                      +..+  ...+.+++|||.. ..++++..||.|.+||+.....          .+......+....+.+.|  ++.+    
T Consensus       437 ~~~~--~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~----------~Pv~s~~~~~~~l~~~~~--s~~g----  498 (555)
T KOG1587|consen  437 LDSS--PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE----------EPVLSQKVCSPALTRVRW--SPNG----  498 (555)
T ss_pred             hhhc--cceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc----------CCcccccccccccceeec--CCCC----
Confidence            6654  5568899999976 5667778899999999987543          456666555666788889  9999    


Q ss_pred             eeEEeeecceeeee
Q psy2305         320 VADATCSGQITNVK  333 (334)
Q Consensus       320 ~~l~t~~~d~~i~~  333 (334)
                      +.|+.|...|++.+
T Consensus       499 ~~lavGd~~G~~~~  512 (555)
T KOG1587|consen  499 KLLAVGDANGTTHI  512 (555)
T ss_pred             cEEEEecCCCcEEE
Confidence            99999999997764

>KOG1273|consensus

Probab=99.88  E-value=1.1e-20  Score=145.10  Aligned_cols=234  Identities=12%  Similarity=0.112  Sum_probs=167.5

Q ss_pred             cceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeee
Q psy2305          70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECV  148 (334)
Q Consensus        70 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~  148 (334)
                      ++.|++.|.+||+|..||.|.|||+.+....+.+..|.+     +|++++||+||+.|++++ |..|.+||+.. +....
T Consensus        28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-----pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~  101 (405)
T KOG1273|consen   28 CCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVR-----PITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLK  101 (405)
T ss_pred             eEEeccCcceeeeeccCCcEEEEEccccchhhhhhcccc-----ceeEEEecCCCCEeeeecCCceeEEEeccC-CCcee
Confidence            345688999999999999999999999888888887776     999999999999999998 99999999997 55444


Q ss_pred             eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc-CC----CCeEEEEEccCCcEEEeeecCC
Q psy2305         149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG-HN----GGITHLEFSSNGILLFSGARKD  223 (334)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~----~~i~~~~~~~~~~~l~~~~~~d  223 (334)
                      .     .....+|..+.|+|...+..++.-.+..-.+-++..++. ..+.. ..    ....+..|.+.|+++++|. ..
T Consensus       102 r-----irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGt-sK  174 (405)
T KOG1273|consen  102 R-----IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGT-SK  174 (405)
T ss_pred             E-----EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEec-Cc
Confidence            3     345789999999998875666555555555555544221 11211 11    1122346899999999999 89


Q ss_pred             CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccc--c
Q psy2305         224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH--Q  301 (334)
Q Consensus       224 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~  301 (334)
                      |.+.++|..+ .+++..++-.. ...+-++.++-.|++|+.-+.|..|+.|+++.-...   ..+.-.++.+++..-  .
T Consensus       175 Gkllv~~a~t-~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~---~r~~e~e~~~K~qDvVNk  249 (405)
T KOG1273|consen  175 GKLLVYDAET-LECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE---GRDGEVEPEHKLQDVVNK  249 (405)
T ss_pred             ceEEEEecch-heeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc---CccCCcChhHHHHHHHhh
Confidence            9999999998 66666665432 245667889999999999999999999998742110   000001222333211  1


Q ss_pred             cccceeeeccCCCcccceeeEEeeec
Q psy2305         302 DCTNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       302 ~~i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                      -.=..++|  +.+|    .|+..++.
T Consensus       250 ~~Wk~ccf--s~dg----eYv~a~s~  269 (405)
T KOG1273|consen  250 LQWKKCCF--SGDG----EYVCAGSA  269 (405)
T ss_pred             hhhhheee--cCCc----cEEEeccc
Confidence            12356788  8899    88887764

>KOG1587|consensus

Probab=99.88  E-value=5.2e-20  Score=158.14  Aligned_cols=261  Identities=17%  Similarity=0.167  Sum_probs=181.8

Q ss_pred             CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      ..|.|++|+| +..++|.|..+|.|.+||+..+...         .+.........|..++..+.|-.     ++.+.-+
T Consensus       243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~---------~~s~ls~~~~sh~~~v~~vvW~~-----~~~~~~f  308 (555)
T KOG1587|consen  243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT---------PPSGLSALEVSHSEPVTAVVWLQ-----NEHNTEF  308 (555)
T ss_pred             CceeEEEeccCCcceEEeeccCceEEEEEccCCCCC---------CCcccccccccCCcCeEEEEEec-----cCCCCce
Confidence            3689999999 5667888889999999999887652         01223445566888999999965     3344558


Q ss_pred             EEeeCCCcEEEEeCCCCee---eEEEcCcc----ccccccceeEEEEcCCC-CEEEEee-CCcEEEEEc---CCCCCeee
Q psy2305          81 LCSSMYAPIHLWDSVGGEI---KATYRPYN----QVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFST---DRPGRECV  148 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~---~~~~~~~~----~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~---~~~~~~~~  148 (334)
                      ++++.||.|..|+++.-..   ........    .......+++++|.+.. ..++.|. +|.|.--.-   ........
T Consensus       309 ~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~  388 (555)
T KOG1587|consen  309 FSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSY  388 (555)
T ss_pred             EEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccc
Confidence            8999999999998754222   11111111    11112278999999865 4566776 788876332   22110010


Q ss_pred             eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC-CCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEE
Q psy2305         149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS-DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEII  227 (334)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~  227 (334)
                      ........|.++|+++.++|-+...+++++ |.+++||... ...++..+..+...+++++|||....++...+.||.|.
T Consensus       389 ~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~  467 (555)
T KOG1587|consen  389 KGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD  467 (555)
T ss_pred             cccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence            100145678899999999999985566555 9999999987 67788888888888999999997765444443899999


Q ss_pred             EEEccCC-CccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         228 CWDLRNP-GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       228 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      +||+... ..+..+....  ......+.|++.|+.|++|...|++++|++...
T Consensus       468 iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  468 IWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             hhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            9999852 2233333322  334455778899999999999999999999754

>KOG4328|consensus

Probab=99.87  E-value=1.5e-20  Score=150.90  Aligned_cols=244  Identities=13%  Similarity=0.110  Sum_probs=170.7

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe----eeEEEcCccccccccceeEEEEcCCC-CEEEEe-
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE----IKATYRPYNQVDEVTHAYSLAFSLDG-NKIYAG-  130 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-  130 (334)
                      +.+.|++++|+|     ..+-+++++|..-|+|-+||+.+.+    .+..+..|..     +|.++.|+|.+ ..+++. 
T Consensus       185 ~~~Rit~l~fHP-----t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~-----~Vs~l~F~P~n~s~i~ssS  254 (498)
T KOG4328|consen  185 TDRRITSLAFHP-----TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG-----PVSGLKFSPANTSQIYSSS  254 (498)
T ss_pred             cccceEEEEecc-----cCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCc-----cccceEecCCChhheeeec
Confidence            457899999987     3355789999999999999995221    2344444333     89999999975 344454 


Q ss_pred             eCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc-eEeeccCCCCeEEEEE
Q psy2305         131 FLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP-LFFLKGHNGGITHLEF  209 (334)
Q Consensus       131 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~  209 (334)
                      +||+|++-|++.  ..... .+........+.++.|+.+.. .++.+..=|...+||+++++. ...+.-|...|.++++
T Consensus       255 yDGtiR~~D~~~--~i~e~-v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  255 YDGTIRLQDFEG--NISEE-VLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL  330 (498)
T ss_pred             cCceeeeeeecc--hhhHH-HhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence            499999999985  22211 002233455678889988888 777777778999999998755 5556778889999999


Q ss_pred             ccCC-cEEEeeecCCCeEEEEEccCCCccce-eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCc
Q psy2305         210 SSNG-ILLFSGARKDCEIICWDLRNPGCILH-TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYE  287 (334)
Q Consensus       210 ~~~~-~~l~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  287 (334)
                      +|.. .+|++++ .|++.+|||++.-..... .+..-.+...|.+..|||.+-.|++.+.|..|+|||..--...     
T Consensus       331 NP~~p~~laT~s-~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~-----  404 (498)
T KOG4328|consen  331 NPVCPWFLATAS-LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK-----  404 (498)
T ss_pred             CCCCchheeecc-cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc-----
Confidence            9955 5788999 899999999986322111 2333334667888999999888999999999999998511000     


Q ss_pred             cccccccceecccc----c--ccceeeeccCCCcccceeeEEeeeccee
Q psy2305         288 ESVQEPLYKFSAHQ----D--CTNGVRWKHHKFERDLLVADATCSGQIT  330 (334)
Q Consensus       288 ~~~~~~~~~~~~~~----~--~i~~~~~~~s~~~~~~~~~l~t~~~d~~  330 (334)
                         .++...+. |.    .  .....+|  .|+.    .++++|-.-..
T Consensus       405 ---~~p~~~I~-Hn~~t~RwlT~fKA~W--~P~~----~li~vg~~~r~  443 (498)
T KOG4328|consen  405 ---DEPLGTIP-HNNRTGRWLTPFKAAW--DPDY----NLIVVGRYPRP  443 (498)
T ss_pred             ---CCccceee-ccCcccccccchhhee--CCCc----cEEEEeccCcc
Confidence               02222221 22    1  3456789  9988    88888765433

>KOG2111|consensus

Probab=99.87  E-value=1.1e-18  Score=134.27  Aligned_cols=241  Identities=12%  Similarity=0.222  Sum_probs=171.6

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE-
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC-   82 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~-   82 (334)
                      ..+++|+.|...+++|..+| .+||+.+.-+....            ..... .+-.+..+-|         ..++|+. 
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~------------r~~~~-~G~~~veMLf---------R~N~laLV   64 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS------------RQFID-GGFKIVEMLF---------RSNYLALV   64 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhh------------hcccc-CchhhhhHhh---------hhceEEEe
Confidence            45699999999999998877 99999986443200            00000 0111222222         2334433 


Q ss_pred             eeCC------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccc
Q psy2305          83 SSMY------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        83 ~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      |+.+      ..|.|||=...+++.++....      +|.++.+.++  .|++.-.+.|.+|.....-+.+...  ....
T Consensus        65 GGg~~pky~pNkviIWDD~k~~~i~el~f~~------~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~--et~~  134 (346)
T KOG2111|consen   65 GGGSRPKYPPNKVIIWDDLKERCIIELSFNS------EIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVI--ETRS  134 (346)
T ss_pred             cCCCCCCCCCceEEEEecccCcEEEEEEecc------ceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeee--eccc
Confidence            3332      479999965666666665433      8999999976  6888888999999998534443321  1222


Q ss_pred             cccceEEEEEcCCCCcEEEE-eecCCeEEEEECCCCCc--eEeeccCCCCeEEEEEccCCcEEEeeecCCCe-EEEEEcc
Q psy2305         157 RKNIVSAIAINPVHPDICAL-GTYSKIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNGILLFSGARKDCE-IICWDLR  232 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~-i~iwd~~  232 (334)
                      ....+.+++-+.+.. +||. |-.-|.|+|-|+...+.  ...+.+|.+.|.+++.+.+|..+|+++ ..|+ |||||..
T Consensus       135 NPkGlC~~~~~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS-tkGTLIRIFdt~  212 (346)
T KOG2111|consen  135 NPKGLCSLCPTSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS-TKGTLIRIFDTE  212 (346)
T ss_pred             CCCceEeecCCCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec-cCcEEEEEEEcC
Confidence            233344444333433 5554 45569999999977655  467889999999999999999999999 7777 7999999


Q ss_pred             CCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         233 NPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      + +..+.++........+.+++|||++.+|++++..|+++||.++...
T Consensus       213 ~-g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  213 D-GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             C-CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            8 8888999887778889999999999999999999999999987643

>KOG1524|consensus

Probab=99.87  E-value=1.8e-20  Score=153.59  Aligned_cols=267  Identities=13%  Similarity=0.100  Sum_probs=186.9

Q ss_pred             CCceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           1 MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         1 ~d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      ++-|.|+.|+.+...+.+++ |..+.+|.--+....+....+..-.|....              -.+++..--.....|
T Consensus        14 ~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h--------------~~~rs~~~g~~~d~~   78 (737)
T KOG1524|consen   14 SEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMH--------------LGGRSSGGGKGSDTL   78 (737)
T ss_pred             ceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCcccc--------------ccccccCCCCCcceE
Confidence            35577899998887666655 555555544333322111111111111000              001111111234578


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +.++.||.+.+.+ +.++..+.+..|..     .+.+-.|+|||.-|++++ ||.|++|.-.  |.. +.   .+.....
T Consensus        79 ~i~s~DGkf~il~-k~~rVE~sv~AH~~-----A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GML-RS---tl~Q~~~  146 (737)
T KOG1524|consen   79 LICSNDGRFVILN-KSARVERSISAHAA-----AISSGRWSPDGAGLLTAGEDGVIKIWSRS--GML-RS---TVVQNEE  146 (737)
T ss_pred             EEEcCCceEEEec-ccchhhhhhhhhhh-----hhhhcccCCCCceeeeecCCceEEEEecc--chH-HH---HHhhcCc
Confidence            8889999999987 46777677776655     889999999999999776 9999999865  332 22   4566778


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccce
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                      +|.|++|.|+..+.+.+.  .+.+.|=-+.-...+...+.|.+-|.++.|+|....+++|+ +|-..++||-.  +..+.
T Consensus       147 ~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~--G~~Lf  221 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQ--GANLF  221 (737)
T ss_pred             eeEEEEECCCCCceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecC-CceeEEeeccc--Ccccc
Confidence            999999999998455443  46777777776767778899999999999999999999999 99999999987  56555


Q ss_pred             eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccce
Q psy2305         240 TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLL  319 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~  319 (334)
                      .-..|  ..++++++|+|+ +.++.++.+ +++   ++.                    ...+.|..++|  ||||    
T Consensus       222 ~S~~~--ey~ITSva~npd-~~~~v~S~n-t~R---~~~--------------------p~~GSifnlsW--S~DG----  268 (737)
T KOG1524|consen  222 TSAAE--EYAITSVAFNPE-KDYLLWSYN-TAR---FSS--------------------PRVGSIFNLSW--SADG----  268 (737)
T ss_pred             cCChh--ccceeeeeeccc-cceeeeeee-eee---ecC--------------------CCccceEEEEE--cCCC----
Confidence            44444  778999999999 666666543 344   222                    12567999999  9999    


Q ss_pred             eeEEeeecceeee
Q psy2305         320 VADATCSGQITNV  332 (334)
Q Consensus       320 ~~l~t~~~d~~i~  332 (334)
                      ..++.|...|.+.
T Consensus       269 TQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  269 TQATCGTSTGQLI  281 (737)
T ss_pred             ceeeccccCceEE
Confidence            9999999988775

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.87  E-value=4.2e-20  Score=159.30  Aligned_cols=236  Identities=13%  Similarity=0.087  Sum_probs=159.2

Q ss_pred             CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC---CcEEEEeCCCCe
Q psy2305          22 DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY---APIHLWDSVGGE   98 (334)
Q Consensus        22 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~   98 (334)
                      +..|++||.+.....               .+.. +...+....|       +|||+.|+.++.+   ..|.+||+.+++
T Consensus       183 ~~~i~i~d~dg~~~~---------------~lt~-~~~~v~~p~w-------SPDG~~la~~s~~~~~~~i~i~dl~tg~  239 (429)
T PRK01742        183 PYEVRVADYDGFNQF---------------IVNR-SSQPLMSPAW-------SPDGSKLAYVSFENKKSQLVVHDLRSGA  239 (429)
T ss_pred             eEEEEEECCCCCCce---------------Eecc-CCCccccceE-------cCCCCEEEEEEecCCCcEEEEEeCCCCc
Confidence            468999998766532               3332 3456777676       7799999887654   369999998876


Q ss_pred             eeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEE
Q psy2305          99 IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICAL  176 (334)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  176 (334)
                      .........      ....++|+|||+.|+.+ . +|.+.||.++..+....    .+..+...+....|+|+|+ .|+.
T Consensus       240 ~~~l~~~~g------~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~wSpDG~-~i~f  308 (429)
T PRK01742        240 RKVVASFRG------HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS----QLTSGAGNNTEPSWSPDGQ-SILF  308 (429)
T ss_pred             eEEEecCCC------ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE----eeccCCCCcCCEEECCCCC-EEEE
Confidence            433221111      23468999999988865 3 77766665443233333    3455666788999999999 6554


Q ss_pred             -eecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEE
Q psy2305         177 -GTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD  254 (334)
Q Consensus       177 -~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  254 (334)
                       +..+|...+|++... .....+ .+..  ....|+|+|++|++.+ .++ +.+||+.+ +... .+....   ....+.
T Consensus       309 ~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~-~~~-i~~~Dl~~-g~~~-~lt~~~---~~~~~~  378 (429)
T PRK01742        309 TSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMIN-GDN-VVKQDLTS-GSTE-VLSSTF---LDESPS  378 (429)
T ss_pred             EECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEc-CCC-EEEEECCC-CCeE-EecCCC---CCCCce
Confidence             445788888877432 223333 3433  4678999999999888 555 55699986 4432 222211   123467


Q ss_pred             ecCCCceEEeeecCCcEEEEeCC--CCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         255 LTSCSNYLLSGNTNGDLSIWNVN--TSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       255 ~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      |+|+|++|+.++.++...+|++.  .+            +....+..|.+.+..++|  +|-.
T Consensus       379 ~sPdG~~i~~~s~~g~~~~l~~~~~~G------------~~~~~l~~~~g~~~~p~w--sp~~  427 (429)
T PRK01742        379 ISPNGIMIIYSSTQGLGKVLQLVSADG------------RFKARLPGSDGQVKFPAW--SPYL  427 (429)
T ss_pred             ECCCCCEEEEEEcCCCceEEEEEECCC------------CceEEccCCCCCCCCccc--CCCC
Confidence            99999999999999988888764  33            566777788888999999  8853

>KOG1523|consensus

Probab=99.87  E-value=2.8e-19  Score=137.65  Aligned_cols=210  Identities=17%  Similarity=0.156  Sum_probs=160.7

Q ss_pred             CCceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           1 MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         1 ~d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +++|+|.+|++|++.+|++.....|.||.....+.-           +..+++.. |...|+.++|       +|..+.|
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w-----------~~~htls~-Hd~~vtgvdW-------ap~snrI   70 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW-----------EPAHTLSE-HDKIVTGVDW-------APKSNRI   70 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCc-----------eeceehhh-hCcceeEEee-------cCCCCce
Confidence            368999999999999999999999999998877621           12244443 6688999999       5588899


Q ss_pred             EEeeCCCcEEEEeC-CCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          81 LCSSMYAPIHLWDS-VGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        81 ~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      ++++.|..-++|.. ..++...++....+..   .++++.|+|.++.+++|+ ...|.+|-.+.+..--.. ...-..+.
T Consensus        71 vtcs~drnayVw~~~~~~~WkptlvLlRiNr---AAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs-KhikkPir  146 (361)
T KOG1523|consen   71 VTCSHDRNAYVWTQPSGGTWKPTLVLLRINR---AATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS-KHIKKPIR  146 (361)
T ss_pred             eEccCCCCccccccCCCCeeccceeEEEecc---ceeeEeecCcCceEEeccCccEEEEEEEecccceehh-hhhCCccc
Confidence            99999999999998 4554443333222222   889999999999999998 788899888753221111 10235567


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECC-----C-------------CCceEeeccCCCCeEEEEEccCCcEEEeee
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDS-----D-------------GRPLFFLKGHNGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-----~-------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  220 (334)
                      ..|+++.|+|++- +++.|+.|+..++|..-     +             |+.+.++....+.+..+.|+|+|..|+-.+
T Consensus       147 Stv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~  225 (361)
T KOG1523|consen  147 STVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG  225 (361)
T ss_pred             cceeeeeccCCcc-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence            8899999999999 99999999999998641     1             123344444567899999999999999999


Q ss_pred             cCCCeEEEEEccCCC
Q psy2305         221 RKDCEIICWDLRNPG  235 (334)
Q Consensus       221 ~~d~~i~iwd~~~~~  235 (334)
                       .|..+.+-|...+.
T Consensus       226 -Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  226 -HDSTVSFVDAAGPS  239 (361)
T ss_pred             -CCCceEEeecCCCc
Confidence             89999999988644

>KOG0303|consensus

Probab=99.86  E-value=6.5e-20  Score=144.86  Aligned_cols=208  Identities=12%  Similarity=0.160  Sum_probs=156.7

Q ss_pred             eeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCee-------eEEEcCccccccccceeEEEEcCCC-
Q psy2305          53 LKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEI-------KATYRPYNQVDEVTHAYSLAFSLDG-  124 (334)
Q Consensus        53 ~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~-  124 (334)
                      +..+|.++|.+++|+|.      +.+.||+|+.|.+|.||.+..+.+       +..+.+|..     .|--++|+|.. 
T Consensus        76 ~v~GHt~~vLDi~w~Pf------nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r-----rVg~V~wHPtA~  144 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPF------NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR-----RVGLVQWHPTAP  144 (472)
T ss_pred             CccCccccccccccCcc------CCceeecCCCCceEEEEECCCcccccCcccceEEEeecce-----eEEEEeecccch
Confidence            34467899999999884      677899999999999999876543       445555444     88999999975 


Q ss_pred             CEEEEe-eCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCC-
Q psy2305         125 NKIYAG-FLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNG-  202 (334)
Q Consensus       125 ~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-  202 (334)
                      +.|+++ +|+.|.+|++.+ +..+.    .+. |...|.++.|+.+|. +|++.+.|..|+|||.++++.+..-.+|.+ 
T Consensus       145 NVLlsag~Dn~v~iWnv~t-geali----~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~  217 (472)
T KOG0303|consen  145 NVLLSAGSDNTVSIWNVGT-GEALI----TLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA  217 (472)
T ss_pred             hhHhhccCCceEEEEeccC-Cceee----ecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCC
Confidence            445555 499999999998 55554    234 999999999999999 999999999999999999999988877765 


Q ss_pred             CeEEEEEccCCcEEEeeec--CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEe-eecCCcEEEEeCCCC
Q psy2305         203 GITHLEFSSNGILLFSGAR--KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLS-GNTNGDLSIWNVNTS  279 (334)
Q Consensus       203 ~i~~~~~~~~~~~l~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~  279 (334)
                      .-..+.|-.+|..+-+|-.  .+..+-+||......++....-. ....++---|.||.+.++. |-.|+.|+.|.+...
T Consensus       218 k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  218 KPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             CcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence            3445678888885444421  46789999998755553333222 2333433337888887765 455999999999875

>KOG0290|consensus

Probab=99.86  E-value=1.8e-19  Score=137.02  Aligned_cols=252  Identities=12%  Similarity=0.176  Sum_probs=179.4

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeC----CCcEEEEeC--CCCeeeEEEcCccccccccceeEEEEcCCCC----E
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSM----YAPIHLWDS--VGGEIKATYRPYNQVDEVTHAYSLAFSLDGN----K  126 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~----d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~  126 (334)
                      ..-+++++.|+..    ...+.+|+.|+.    .+.|.|..+  .+++.+..-. ..+..   +++.+.|.|+..    -
T Consensus        43 ap~~lya~~Ws~~----~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~Y---P~tK~~wiPd~~g~~pd  114 (364)
T KOG0290|consen   43 APWPLYAMNWSVR----PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPY---PVTKLMWIPDSKGVYPD  114 (364)
T ss_pred             CCCceeeeccccC----CCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCC---CccceEecCCccccCcc
Confidence            3456888888542    223446888863    356666544  3444433222 22322   899999999863    3


Q ss_pred             EEEeeCCcEEEEEcCCCCCeeeeecc----cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC---ceEeecc
Q psy2305         127 IYAGFLSEVKIFSTDRPGRECVSRNL----KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR---PLFFLKG  199 (334)
Q Consensus       127 l~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~  199 (334)
                      |++.++..+++|.+............    ....+..+++++.|+.-..+++.+.+-|-+..|||++++.   ....+-+
T Consensus       115 lLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA  194 (364)
T KOG0290|consen  115 LLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA  194 (364)
T ss_pred             hhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence            34444568999999853222221110    2344567899999998888799999999999999999863   3566788


Q ss_pred             CCCCeEEEEEccCCc-EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCC-ceEEeeecC-CcEEEEeC
Q psy2305         200 HNGGITHLEFSSNGI-LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTN-GDLSIWNV  276 (334)
Q Consensus       200 ~~~~i~~~~~~~~~~-~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~d-g~i~iwd~  276 (334)
                      |...|..++|...+. .+++.+ .||.++++|++.....--.++..........++|+++. +++|+-..| ..|.|.|+
T Consensus       195 HDKEV~DIaf~~~s~~~FASvg-aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi  273 (364)
T KOG0290|consen  195 HDKEVYDIAFLKGSRDVFASVG-ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI  273 (364)
T ss_pred             cCcceeEEEeccCccceEEEec-CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence            999999999998654 678888 89999999999733322233333335677889998854 677766554 57999999


Q ss_pred             CCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         277 NTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +...           .++..+.+|.+.|+.++|  .|...   ..|.|||+|...-|
T Consensus       274 R~P~-----------tpva~L~~H~a~VNgIaW--aPhS~---~hictaGDD~qali  314 (364)
T KOG0290|consen  274 RVPC-----------TPVARLRNHQASVNGIAW--APHSS---SHICTAGDDCQALI  314 (364)
T ss_pred             cCCC-----------cceehhhcCcccccceEe--cCCCC---ceeeecCCcceEEE
Confidence            9864           678899999999999999  99874   78999999987643

>KOG2139|consensus

Probab=99.86  E-value=5.3e-19  Score=138.35  Aligned_cols=242  Identities=14%  Similarity=0.117  Sum_probs=165.9

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      ++.++|++.-..+|++..|-.|++|+-.....               ..+.......|.+++|.|.      .+..|+.|
T Consensus       101 lr~~aWhqH~~~fava~nddvVriy~ksst~p---------------t~Lks~sQrnvtclawRPl------saselavg  159 (445)
T KOG2139|consen  101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP---------------TKLKSVSQRNVTCLAWRPL------SASELAVG  159 (445)
T ss_pred             eeeEeechhhhhhhhhccCcEEEEeccCCCCC---------------ceecchhhcceeEEEeccC------Ccceeeee
Confidence            57889999766788999999999999877333               3555556678999999885      23467777


Q ss_pred             eCCCcEEEEeCCCC----e--------eeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeee
Q psy2305          84 SMYAPIHLWDSVGG----E--------IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVS  149 (334)
Q Consensus        84 ~~d~~i~iwd~~~~----~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~  149 (334)
                      .+.| |.+|.....    .        ....++..+|    .+|++|.|++||..+++++  +..|.|||.++ +.....
T Consensus       160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh----~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL  233 (445)
T KOG2139|consen  160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH----NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPL  233 (445)
T ss_pred             ecce-eEEEEcCcccccccccccccccchhheeCCCC----ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccc
Confidence            7665 999975421    1        1112222222    2899999999999999886  89999999997 433321


Q ss_pred             ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         150 RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                          .....+.++-+.|+||+. +|..++-|+..++|......-........+.|....|+|+|++|+...  .|.-++|
T Consensus       234 ----~~~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~--sgsp~ly  306 (445)
T KOG2139|consen  234 ----IPKGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC--SGSPRLY  306 (445)
T ss_pred             ----cccCCCceeeEEEcCCCC-EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE--cCCceEE
Confidence                123346788899999999 888899999999996543322222222455899999999999887776  4556666


Q ss_pred             EccCCCccceee--------------c------c-cccCCceEEEEecCCCceEEeeecCC--------cEEEEeCCCC
Q psy2305         230 DLRNPGCILHTF--------------P------R-QVSTNQRVYFDLTSCSNYLLSGNTNG--------DLSIWNVNTS  279 (334)
Q Consensus       230 d~~~~~~~~~~~--------------~------~-~~~~~~~~~~~~s~~~~~l~~~~~dg--------~i~iwd~~~~  279 (334)
                      .+...++.....              .      + ....+..-+++|.|.|.+|++.-..+        .|.+||.+..
T Consensus       307 sl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  307 SLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             EEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence            665322211100              0      0 11134567799999999999875433        4667776653

>KOG1538|consensus

Probab=99.86  E-value=6.6e-19  Score=148.20  Aligned_cols=202  Identities=18%  Similarity=0.185  Sum_probs=161.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecc------------
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK------------   69 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------   69 (334)
                      |.|+|++|+.||+++|+|+.|..|.+|+-.-.                 ..++..|+..|.++.|+|.            
T Consensus        54 DtVycVAys~dGkrFASG~aDK~VI~W~~klE-----------------G~LkYSH~D~IQCMsFNP~~h~LasCsLsdF  116 (1081)
T KOG1538|consen   54 DTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-----------------GILKYSHNDAIQCMSFNPITHQLASCSLSDF  116 (1081)
T ss_pred             ceEEEEEEccCCceeccCCCceeEEEeccccc-----------------ceeeeccCCeeeEeecCchHHHhhhcchhhc
Confidence            78999999999999999999999999986432                 3456667778888888772            


Q ss_pred             --------------------cceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC-----
Q psy2305          70 --------------------TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG-----  124 (334)
Q Consensus        70 --------------------~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----  124 (334)
                                          +.+|..||++++.|-.+|+|.+-+- +++....++..+..+  .+|++++|+|..     
T Consensus       117 glWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~N--spiwsi~~~p~sg~G~~  193 (1081)
T KOG1538|consen  117 GLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSN--SPIWSICWNPSSGEGRN  193 (1081)
T ss_pred             cccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCC--CCceEEEecCCCCCCcc
Confidence                                3677899999999999999999874 555555555433222  289999999963     


Q ss_pred             CEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCC
Q psy2305         125 NKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG  203 (334)
Q Consensus       125 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  203 (334)
                      ..+++.. ..++.+|.+.  |+.+..    -..-.....|+.+.++|. +++.|+.|+.+.+|. +.|-.+.++......
T Consensus       194 di~aV~DW~qTLSFy~Ls--G~~Igk----~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fT-R~GvrLGTvg~~D~W  265 (1081)
T KOG1538|consen  194 DILAVADWGQTLSFYQLS--GKQIGK----DRALNFDPCCISYFTNGE-YILLGGSDKQLSLFT-RDGVRLGTVGEQDSW  265 (1081)
T ss_pred             ceEEEEeccceeEEEEec--ceeecc----cccCCCCchhheeccCCc-EEEEccCCCceEEEe-ecCeEEeecccccee
Confidence            3566666 8899999988  665542    223344567999999999 999999999999998 567777777667889


Q ss_pred             eEEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         204 ITHLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       204 i~~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      |..++..|++++++.|+ .||+|-.|++-
T Consensus       266 IWtV~~~PNsQ~v~~GC-qDGTiACyNl~  293 (1081)
T KOG1538|consen  266 IWTVQAKPNSQYVVVGC-QDGTIACYNLI  293 (1081)
T ss_pred             EEEEEEccCCceEEEEE-ccCeeehhhhH
Confidence            99999999999999999 89999999874

>KOG2919|consensus

Probab=99.86  E-value=5.5e-20  Score=141.77  Aligned_cols=238  Identities=15%  Similarity=0.101  Sum_probs=171.9

Q ss_pred             ceeEEEEc-------CCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeee-eceeEEEEEEecccceec
Q psy2305           3 IEEDVDEA-------PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK-EGGIIYDYVWYPKTSSID   74 (334)
Q Consensus         3 ~V~~~~~s-------p~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~s   74 (334)
                      .|...+|-       |+..++|+.+.+.-|++||.-+++...              .++.- |...+.+.    .++.|+
T Consensus       106 tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lra--------------Sy~~ydh~de~taA----hsL~Fs  167 (406)
T KOG2919|consen  106 TVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRA--------------SYRAYDHQDEYTAA----HSLQFS  167 (406)
T ss_pred             EEEEEEeeeccccCCCccceeeeccccCceeeeecccccccc--------------chhhhhhHHhhhhh----eeEEec
Confidence            45555554       677899999999999999999998762              22211 12222211    136679


Q ss_pred             CCCcEEEEeeCCCcEEEEeC-CCCeeeEEEc--CccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeee
Q psy2305          75 GFTSYFLCSSMYAPIHLWDS-VGGEIKATYR--PYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVS  149 (334)
Q Consensus        75 ~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~  149 (334)
                      |||..|++|- ...|+++|+ +.|+.-..+.  .++.....+-+.+++|+|-.. .+++|+ ..++-||.-.. ..++. 
T Consensus       168 ~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~-  244 (406)
T KOG2919|consen  168 PDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQ-  244 (406)
T ss_pred             CCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCcee-
Confidence            9999998774 678999998 4554322221  121222334789999999654 788887 77888887764 45555 


Q ss_pred             ecccccccccceEEEEEcCCCCcEEEEeec-CCeEEEEECCC-CCceEeeccCCC-CeEEEE--EccCCcEEEeeecCCC
Q psy2305         150 RNLKPWFRKNIVSAIAINPVHPDICALGTY-SKIIGLFSDSD-GRPLFFLKGHNG-GITHLE--FSSNGILLFSGARKDC  224 (334)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~~~~~~~~~-~i~~~~--~~~~~~~l~~~~~~d~  224 (334)
                         .+.+|.+.|+.+.|.++|+ .|.+|.. +..|.+||++. ..++..+.+|.+ .-..|-  ..|++++|++|+ .||
T Consensus       245 ---llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~-tdG  319 (406)
T KOG2919|consen  245 ---LLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD-TDG  319 (406)
T ss_pred             ---eecccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC-CCc
Confidence               5779999999999999999 8888764 67899999986 467777877765 333444  468999999999 899


Q ss_pred             eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC
Q psy2305         225 EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN  268 (334)
Q Consensus       225 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  268 (334)
                      .|++||+...+.....+..+  ...+..++++|-=.++++++..
T Consensus       320 ~V~vwdlk~~gn~~sv~~~~--sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  320 SVRVWDLKDLGNEVSVTGNY--SDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cEEEEecCCCCCcccccccc--cccccceecCcccceeeeccCc
Confidence            99999999877766666554  5567778899987778877644

>KOG1334|consensus

Probab=99.85  E-value=2.6e-20  Score=150.85  Aligned_cols=288  Identities=16%  Similarity=0.128  Sum_probs=213.8

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      -|..|.|+..|..|++|+.|..|.+||+......              ..+..+|...|....|-|.     .+.+.+++
T Consensus       144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--------------l~f~SGH~~NvfQaKFiP~-----s~d~ti~~  204 (559)
T KOG1334|consen  144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--------------LSFESGHCNNVFQAKFIPF-----SGDRTIVT  204 (559)
T ss_pred             ccceeeecccCceeeccCccceEEeehhhccCcc--------------cccccccccchhhhhccCC-----CCCcCcee
Confidence            4788999999999999999999999999988876              4667778888888888773     35567999


Q ss_pred             eeCCCcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCE-EEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          83 SSMYAPIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNK-IYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        83 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++.||.+++=.+.. +.+..+.....|.+   +|..++.-|+..+ |.+++ |+.+.-+|+++ +....... ....+..
T Consensus       205 ~s~dgqvr~s~i~~t~~~e~t~rl~~h~g---~vhklav~p~sp~~f~S~geD~~v~~~Dlr~-~~pa~~~~-cr~~~~~  279 (559)
T KOG1334|consen  205 SSRDGQVRVSEILETGYVENTKRLAPHEG---PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ-DVPAEKFV-CREADEK  279 (559)
T ss_pred             ccccCceeeeeeccccceecceecccccC---ccceeeecCCCCCcccccccccceeeeeecc-CCccceee-eeccCCc
Confidence            99999999876543 33322222222333   8899999998754 33444 99999999986 33322211 1223333


Q ss_pred             ---ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC------ceEeec------cCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305         160 ---IVSAIAINPVHPDICALGTYSKIIGLFSDSDGR------PLFFLK------GHNGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       160 ---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                         ....++.+|...+.+++++.|..+++||.+.-.      .+..+.      .....|++++|+.++.-|+++- .|-
T Consensus       280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY-nDe  358 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY-NDE  358 (559)
T ss_pred             cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-ccc
Confidence               567899999988899999999999999986521      123332      2235699999998777666666 688


Q ss_pred             eEEEEEccCC-C----------ccce-eecccccCCceEEEE-ecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccc
Q psy2305         225 EIICWDLRNP-G----------CILH-TFPRQVSTNQRVYFD-LTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQ  291 (334)
Q Consensus       225 ~i~iwd~~~~-~----------~~~~-~~~~~~~~~~~~~~~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  291 (334)
                      .|+++.-... +          ..+. .+++|.....|-.+- |-|...|+++|+.=|.|.||+-.++            
T Consensus       359 ~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~------------  426 (559)
T KOG1334|consen  359 DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG------------  426 (559)
T ss_pred             ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh------------
Confidence            9999954321 1          1122 367776665555543 5788999999999999999999998            


Q ss_pred             cccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         292 EPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       292 ~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +.+..+.+....|+++.=  +|.-    ++||++|-|.-|||
T Consensus       427 eii~~MegDr~VVNCLEp--HP~~----PvLAsSGid~DVKI  462 (559)
T KOG1334|consen  427 EIIRFMEGDRHVVNCLEP--HPHL----PVLASSGIDHDVKI  462 (559)
T ss_pred             HHHHHhhcccceEeccCC--CCCC----chhhccCCccceee
Confidence            778888887778999999  9999    99999999999987

>KOG0303|consensus

Probab=99.85  E-value=4.5e-19  Score=140.18  Aligned_cols=206  Identities=16%  Similarity=0.246  Sum_probs=157.0

Q ss_pred             CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      .+|..++|+| +...+|+|+.|.+|.||.+..+.....       +-+....+. +|...|.-+.|+|.      ..+.|
T Consensus        82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-------ltepvv~L~-gH~rrVg~V~wHPt------A~NVL  147 (472)
T KOG0303|consen   82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-------LTEPVVELY-GHQRRVGLVQWHPT------APNVL  147 (472)
T ss_pred             ccccccccCccCCceeecCCCCceEEEEECCCcccccC-------cccceEEEe-ecceeEEEEeeccc------chhhH
Confidence            4688899999 567899999999999999987665421       112334454 46688999999885      45689


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++++.|.+|.+||+.+|+.+.++.   |.+   .|+++.|+.||.+|+++. |..|+|||.++ +..+..    ...|.+
T Consensus       148 lsag~Dn~v~iWnv~tgeali~l~---hpd---~i~S~sfn~dGs~l~TtckDKkvRv~dpr~-~~~v~e----~~~heG  216 (472)
T KOG0303|consen  148 LSAGSDNTVSIWNVGTGEALITLD---HPD---MVYSMSFNRDGSLLCTTCKDKKVRVIDPRR-GTVVSE----GVAHEG  216 (472)
T ss_pred             hhccCCceEEEEeccCCceeeecC---CCC---eEEEEEeccCCceeeeecccceeEEEcCCC-CcEeee----cccccC
Confidence            999999999999999999887776   333   899999999999999887 99999999997 555553    345543


Q ss_pred             -ceEEEEEcCCCCcEEEEee---cCCeEEEEECCCCC---ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         160 -IVSAIAINPVHPDICALGT---YSKIIGLFSDSDGR---PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       160 -~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                       .-..+.|-.++. ++.+|.   .++.+-+||..+-+   ....+.. +..|.---|.|+.+.++.++..|+.|+.|.+.
T Consensus       217 ~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  217 AKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             CCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence             345667888887 666663   46789999976543   2344443 44565566889999888777689999999998


Q ss_pred             CC
Q psy2305         233 NP  234 (334)
Q Consensus       233 ~~  234 (334)
                      ..
T Consensus       295 ~d  296 (472)
T KOG0303|consen  295 NE  296 (472)
T ss_pred             CC
Confidence            73

>KOG0771|consensus

Probab=99.85  E-value=5.9e-20  Score=146.31  Aligned_cols=199  Identities=23%  Similarity=0.251  Sum_probs=152.1

Q ss_pred             eEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee
Q psy2305           5 EDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS   84 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~   84 (334)
                      .+++|+++|..|++++.||++|||++.....+               .....|...|.++.|       +|||++|++-+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~---------------l~e~~~~~eV~DL~F-------S~dgk~lasig  205 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI---------------LEEIAHHAEVKDLDF-------SPDGKFLASIG  205 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhh---------------hhhHhhcCcccccee-------CCCCcEEEEec
Confidence            57999999999999999999999998877654               223345577888777       78999999999


Q ss_pred             CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC---CEEEEe--e-CCcEEEEEcCCCCCe--eeeecccccc
Q psy2305          85 MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG---NKIYAG--F-LSEVKIFSTDRPGRE--CVSRNLKPWF  156 (334)
Q Consensus        85 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~--~-d~~i~i~d~~~~~~~--~~~~~~~~~~  156 (334)
                      .| ..+||++++|..+..........   ....+.|+.|+   .+.+.+  . .+.|..|++..-.+.  +...  ....
T Consensus       206 ~d-~~~VW~~~~g~~~a~~t~~~k~~---~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~--~~~~  279 (398)
T KOG0771|consen  206 AD-SARVWSVNTGAALARKTPFSKDE---MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR--KKIK  279 (398)
T ss_pred             CC-ceEEEEeccCchhhhcCCcccch---hhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchh--hhhh
Confidence            99 89999999997666555322211   56778888876   333332  3 577888777642221  1100  1222


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      ....|++++.+++|+ +++.|+.||.|.+++..+-+.++.. +.|...|+.+.|+|+.+++++.+ .+..+.+..+.-
T Consensus       280 ~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svS-s~~~~~v~~l~v  355 (398)
T KOG0771|consen  280 RFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVS-SDNEAAVTKLAV  355 (398)
T ss_pred             ccCcceeEEEcCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccc-cCCceeEEEEee
Confidence            235799999999999 9999999999999999887766655 57999999999999999999988 899988887764

>KOG0649|consensus

Probab=99.85  E-value=9.3e-19  Score=129.96  Aligned_cols=211  Identities=17%  Similarity=0.204  Sum_probs=150.7

Q ss_pred             ecCCCcEEEEeeCCCcEEEEeCCC---------Ce-eeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCC
Q psy2305          73 IDGFTSYFLCSSMYAPIHLWDSVG---------GE-IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDR  142 (334)
Q Consensus        73 ~s~~~~~l~~~~~d~~i~iwd~~~---------~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~  142 (334)
                      ++|.+++|++|+.+|.|.+..+++         ++ .+...+.|..     +++.++|.  ..+|++++||.|+-|.-+.
T Consensus        18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg-----piy~~~f~--d~~Lls~gdG~V~gw~W~E   90 (325)
T KOG0649|consen   18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG-----PIYYLAFH--DDFLLSGGDGLVYGWEWNE   90 (325)
T ss_pred             hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC-----Ceeeeeee--hhheeeccCceEEEeeehh
Confidence            478999999999999999998753         11 1222333333     99999999  4578888899999998664


Q ss_pred             CCCeeeeecc---ccccc-----ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCc
Q psy2305         143 PGRECVSRNL---KPWFR-----KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGI  214 (334)
Q Consensus       143 ~~~~~~~~~~---~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  214 (334)
                      ..+....+++   ...-|     --.|+++-..|..+ -+++++.|+.++.||+++|+..+++++|...|.++.-.....
T Consensus        91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~  169 (325)
T KOG0649|consen   91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG  169 (325)
T ss_pred             hhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence            2221111100   11112     23578999998887 566666899999999999999999999999999999855555


Q ss_pred             EEEeeecCCCeEEEEEccCCCccceeecccc--------cCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCC
Q psy2305         215 LLFSGARKDCEIICWDLRNPGCILHTFPRQV--------STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPY  286 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  286 (334)
                      .+++|+ +||++++||+++ ++.+..+....        ...++.+++  -+..+|++|+. ..+.+|++++.       
T Consensus       170 qilsG~-EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgG-p~lslwhLrss-------  237 (325)
T KOG0649|consen  170 QILSGA-EDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGG-PKLSLWHLRSS-------  237 (325)
T ss_pred             ceeecC-CCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCC-CceeEEeccCC-------
Confidence            788999 999999999998 66666654321        123344444  56678888764 56999999997       


Q ss_pred             ccccccccceecccccccceeee
Q psy2305         287 EESVQEPLYKFSAHQDCTNGVRW  309 (334)
Q Consensus       287 ~~~~~~~~~~~~~~~~~i~~~~~  309 (334)
                           ++...+.- ...+..+.|
T Consensus       238 -----e~t~vfpi-pa~v~~v~F  254 (325)
T KOG0649|consen  238 -----ESTCVFPI-PARVHLVDF  254 (325)
T ss_pred             -----CceEEEec-ccceeEeee
Confidence                 45444442 345788888

>KOG1445|consensus

Probab=99.84  E-value=5.2e-20  Score=153.90  Aligned_cols=236  Identities=12%  Similarity=0.106  Sum_probs=168.8

Q ss_pred             cCCCcEEEE--eeCCCcEEEEeCCCCee-----eEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCC
Q psy2305          74 DGFTSYFLC--SSMYAPIHLWDSVGGEI-----KATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPG  144 (334)
Q Consensus        74 s~~~~~l~~--~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~  144 (334)
                      ..+...+++  ++.-|.|-||++.....     +..+... .     .|+.+.|.| |...|+++. ||.|++|.+...+
T Consensus       588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ng-t-----~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g  661 (1012)
T KOG1445|consen  588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNG-T-----LVTDLHWDPFDDERLAVATDDGQINLWRLTANG  661 (1012)
T ss_pred             eeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccC-c-----eeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence            335555554  45578999999875322     2222211 1     789999999 667788776 9999999998743


Q ss_pred             Ceeee--ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecC
Q psy2305         145 RECVS--RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARK  222 (334)
Q Consensus       145 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  222 (334)
                      -....  -...+..|...|+++.|+|-....|++++.|-+|++||+++++....+.+|.+.|.+++|||+|+.+++.+ .
T Consensus       662 l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc-K  740 (1012)
T KOG1445|consen  662 LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC-K  740 (1012)
T ss_pred             CCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee-c
Confidence            22110  00146789999999999998766999999999999999999999999999999999999999999999999 9


Q ss_pred             CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC----CcEEEEeCCCCCCCCCCCccccccccceec
Q psy2305         223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN----GDLSIWNVNTSNLPSSPYEESVQEPLYKFS  298 (334)
Q Consensus       223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  298 (334)
                      ||+|++|+.++..+++++-.+... ..-..+.|.-+|+++++.+.|    .+|.+||.++-..          .++....
T Consensus       741 Dg~~rVy~Prs~e~pv~Eg~gpvg-tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~----------~pl~t~~  809 (1012)
T KOG1445|consen  741 DGTLRVYEPRSREQPVYEGKGPVG-TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL----------RPLYTQV  809 (1012)
T ss_pred             CceEEEeCCCCCCCccccCCCCcc-CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC----------Ccceeee
Confidence            999999999986666665554432 334457788899999988776    4788998877532          2333221


Q ss_pred             cc-ccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         299 AH-QDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       299 ~~-~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      -. .-.+.--.|  .+|..   -++++|-.|..|+
T Consensus       810 lDvaps~LvP~Y--D~Ds~---~lfltGKGD~~v~  839 (1012)
T KOG1445|consen  810 LDVAPSPLVPHY--DYDSN---VLFLTGKGDRFVN  839 (1012)
T ss_pred             ecccCccccccc--cCCCc---eEEEecCCCceEE
Confidence            11 112222334  55652   4566776777665

>KOG1310|consensus

Probab=99.84  E-value=7.3e-19  Score=144.68  Aligned_cols=206  Identities=16%  Similarity=0.180  Sum_probs=151.2

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      -|+|++|+.+|.+|++|+.|-.+.|||.-..+..              ..+..+|...|.++.|-|     ..+++++++
T Consensus        52 CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--------------hsI~TgHtaNIFsvKFvP-----~tnnriv~s  112 (758)
T KOG1310|consen   52 CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--------------HSISTGHTANIFSVKFVP-----YTNNRIVLS  112 (758)
T ss_pred             eecceeecCCCCEEeecCCcceEEeecchhccee--------------eeeecccccceeEEeeec-----cCCCeEEEe
Confidence            3899999999999999999999999999877765              688888999999999988     457788999


Q ss_pred             eeCCCcEEEEeCCCC----------eeeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeee
Q psy2305          83 SSMYAPIHLWDSVGG----------EIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~  150 (334)
                      |+.|..|+++|+...          +....+..|..     .|..++-.|++. .+.+++ ||+++-+|++.+.......
T Consensus       113 gAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~-----rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~  187 (758)
T KOG1310|consen  113 GAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTD-----RVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE  187 (758)
T ss_pred             ccCcceEEEEecccccccccccCccchhhhhhhhhh-----hhhheecCCCCCceEEEecCCcceeeecccCCccCCccc
Confidence            999999999998742          12233333332     788999999984 444776 9999999999632211110


Q ss_pred             -----cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC--------CC----------ceEee-ccCC-----
Q psy2305         151 -----NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD--------GR----------PLFFL-KGHN-----  201 (334)
Q Consensus       151 -----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------~~----------~~~~~-~~~~-----  201 (334)
                           ...+...--...|+.++|..+++|++|+.|-..++||.+.        +.          ++..+ .+|.     
T Consensus       188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g  267 (758)
T KOG1310|consen  188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG  267 (758)
T ss_pred             cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence                 0011222345679999999998999999999999999431        11          12222 1221     


Q ss_pred             ------CCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         202 ------GGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       202 ------~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                            ..++.+.|+|+|.-|++.- ....++++|+..
T Consensus       268 n~~~~~~~~t~vtfnpNGtElLvs~-~gEhVYlfdvn~  304 (758)
T KOG1310|consen  268 NLDRYITCCTYVTFNPNGTELLVSW-GGEHVYLFDVNE  304 (758)
T ss_pred             ccccceeeeEEEEECCCCcEEEEee-CCeEEEEEeecC
Confidence                  1256788999998777765 567899999864

>KOG0771|consensus

Probab=99.84  E-value=1.4e-18  Score=138.57  Aligned_cols=191  Identities=15%  Similarity=0.115  Sum_probs=142.6

Q ss_pred             eEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce
Q psy2305         116 YSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL  194 (334)
Q Consensus       116 ~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  194 (334)
                      ..++|+++|..|+++. ||.+++|+... ...+.    ....|...|.++.|+|||+ +|++-+.| ..+||+.+++..+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l----~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTIL----EEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAAL  220 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc-chhhh----hhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchh
Confidence            6899999999999997 99999999664 22222    4677889999999999999 99999888 9999999999777


Q ss_pred             Eeecc--CCCCeEEEEEccCC---cE--EEeeecCCCeEEEEEccCCCc--cceeecccccCCceEEEEecCCCceEEee
Q psy2305         195 FFLKG--HNGGITHLEFSSNG---IL--LFSGARKDCEIICWDLRNPGC--ILHTFPRQVSTNQRVYFDLTSCSNYLLSG  265 (334)
Q Consensus       195 ~~~~~--~~~~i~~~~~~~~~---~~--l~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  265 (334)
                      .....  .......+.|+.++   .+  ++... .-+.|+.||+.....  .+...+.-.....+.+++.+++|++++.|
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~-~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG  299 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQF-PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG  299 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecC-CCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence            66642  22345577888776   32  23333 456677777754222  11111111123467889999999999999


Q ss_pred             ecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceee
Q psy2305         266 NTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       266 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i  331 (334)
                      +.||.|.|++..+.+           .....-+.|...|+.+.|  +||.    +++++.+.|...
T Consensus       300 T~dGsVai~~~~~lq-----------~~~~vk~aH~~~VT~ltF--~Pds----r~~~svSs~~~~  348 (398)
T KOG0771|consen  300 TMDGSVAIYDAKSLQ-----------RLQYVKEAHLGFVTGLTF--SPDS----RYLASVSSDNEA  348 (398)
T ss_pred             ccCCcEEEEEeceee-----------eeEeehhhheeeeeeEEE--cCCc----CcccccccCCce
Confidence            999999999999873           223334578889999999  9999    999988877654

>KOG1354|consensus

Probab=99.84  E-value=3.6e-19  Score=138.46  Aligned_cols=315  Identities=15%  Similarity=0.188  Sum_probs=204.4

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCc-eeeeeCC-CCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELH-CKSVWRP-SNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      |-|.++.|..+|.+||||..+|.|.+|.-..... .-.+... ....++....-...-...|..+.|.+     ..+...
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~-----~~n~a~  100 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD-----DGNLAE  100 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC-----CCCccE
Confidence            5688999999999999999999999997543321 1001110 11112222111222346788889965     235556


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeE--------------------EEc--------------CccccccccceeEEEEcCCCC
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKA--------------------TYR--------------PYNQVDEVTHAYSLAFSLDGN  125 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~--------------------~~~--------------~~~~~~~~~~v~~~~~~~~~~  125 (334)
                      ++..+.|.+|++|.+.......                    .+.              .+.|..   -|.++.++.|..
T Consensus       101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHty---hiNSIS~NsD~E  177 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTY---HINSISVNSDKE  177 (433)
T ss_pred             EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccccee---EeeeeeecCccc
Confidence            7778889999999775322111                    011              011211   578999999999


Q ss_pred             EEEEeeCCcEEEEEcCCCCCeeeee---cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce----Eee-
Q psy2305         126 KIYAGFLSEVKIFSTDRPGRECVSR---NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL----FFL-  197 (334)
Q Consensus       126 ~l~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~-  197 (334)
                      .++++.|=.|.+|+++...+.....   |..+..-..-|++..|+|..-++++-.+..|+|++.|++...+-    +.+ 
T Consensus       178 t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  178 TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence            9999999999999998644433221   11223334568899999987778998999999999999854211    111 


Q ss_pred             -----------ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccC----------Cc---eEEE
Q psy2305         198 -----------KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST----------NQ---RVYF  253 (334)
Q Consensus       198 -----------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------~~---~~~~  253 (334)
                                 ..--..|..+.|+++|+++++-.  =-++++||+....+++..+.-|...          ..   -..+
T Consensus       258 epedp~~rsffseiIsSISDvKFs~sGryilsRD--yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec  335 (433)
T KOG1354|consen  258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC  335 (433)
T ss_pred             cccCCcchhhHHHHhhhhhceEEccCCcEEEEec--cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence                       11124688899999999998754  5799999998767777776644321          11   2346


Q ss_pred             EecCCCceEEeeecCCcEEEEeCCCCCCC-----CC-----CCccccccccceec------------ccccccceeeecc
Q psy2305         254 DLTSCSNYLLSGNTNGDLSIWNVNTSNLP-----SS-----PYEESVQEPLYKFS------------AHQDCTNGVRWKH  311 (334)
Q Consensus       254 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~-----~~~~~~~~~~~~~~------------~~~~~i~~~~~~~  311 (334)
                      +|+.++.++++|+....++++++..+...     .+     |....+.+.+..-.            .....+...+|  
T Consensus       336 ~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aW--  413 (433)
T KOG1354|consen  336 SWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAW--  413 (433)
T ss_pred             EEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhcc--
Confidence            79999999999999999999996655322     00     11000111111000            01224677899  


Q ss_pred             CCCcccceeeEEeeecceeee
Q psy2305         312 HKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       312 s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      +|..    ..+|.+..+..+.
T Consensus       414 hp~e----n~ia~aatnnlyi  430 (433)
T KOG1354|consen  414 HPKE----NSIAVAATNNLYI  430 (433)
T ss_pred             CCcc----ceeeeeecCceEE
Confidence            9999    8898888776554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=7.6e-17  Score=139.79  Aligned_cols=274  Identities=22%  Similarity=0.323  Sum_probs=200.0

Q ss_pred             CceeEEEEcCCCcEEEEeeC-CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-E
Q psy2305           2 DIEEDVDEAPDGTCLLTNSN-DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-Y   79 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~   79 (334)
                      +.|..++|+|++.++++++. |+.+++|+.......              ..+.. |...|.+++|       +|++. .
T Consensus       156 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~v~~~~~-------~~~~~~~  213 (466)
T COG2319         156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL--------------STLAG-HTDPVSSLAF-------SPDGGLL  213 (466)
T ss_pred             ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceE--------------Eeecc-CCCceEEEEE-------cCCcceE
Confidence            45789999999998888885 999999999985544              23333 6678888888       45776 5


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeE-EEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKA-TYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +++++.|+.|++||...+.... .+..+..     .. ...|+|++..+++++ ++.+++|++........    ....|
T Consensus       214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~  283 (466)
T COG2319         214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSD-----SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR----TLSGH  283 (466)
T ss_pred             EEEecCCCcEEEEECCCCcEEeeecCCCCc-----ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE----EEecC
Confidence            5555899999999988777766 4555432     32 228999998888776 99999999996443233    23677


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec--cCCCCeEEEEEccCCcEEEee-ecCCCeEEEEEccCC
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK--GHNGGITHLEFSSNGILLFSG-ARKDCEIICWDLRNP  234 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~-~~~d~~i~iwd~~~~  234 (334)
                      ...+.++.|+|++. .+++++.|+.+.+||..+........  .|...+..+.|.+++..++.+ . .|+.+.+|+....
T Consensus       284 ~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~  361 (466)
T COG2319         284 SSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS-DDGTIRLWDLRTG  361 (466)
T ss_pred             CccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeec-CCCcEEeeecCCC
Confidence            89999999999888 77778888889999998887666665  787789999994343556555 5 6899999999873


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEe-eecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLS-GNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHK  313 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~  313 (334)
                      . .......   ...+..+.+++ ...++. +..++.+.+|+....            ........+...+....+  ++
T Consensus       362 ~-~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~~  422 (466)
T COG2319         362 K-PLKTLEG---HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTG------------SLLRNLDGHTSRVTSLDF--SP  422 (466)
T ss_pred             c-eeEEecC---CceEEEEEECC-CCCEEEEecCCCceEEEecccC------------eeeeeccCCCCcEEEEEE--CC
Confidence            3 2222221   12266778888 544444 678899999999986            333333332267888899  99


Q ss_pred             CcccceeeEEeeecceeee
Q psy2305         314 FERDLLVADATCSGQITNV  332 (334)
Q Consensus       314 ~~~~~~~~l~t~~~d~~i~  332 (334)
                      ++    ..+++++.++.+.
T Consensus       423 ~~----~~~~~~~~~~~~~  437 (466)
T COG2319         423 DG----KSLASGSSDNTIR  437 (466)
T ss_pred             CC----cEEEEecCCCcEE
Confidence            99    8888888777665

>KOG1272|consensus

Probab=99.84  E-value=3.8e-20  Score=149.08  Aligned_cols=227  Identities=19%  Similarity=0.254  Sum_probs=181.1

Q ss_pred             eEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee
Q psy2305           5 EDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS   84 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~   84 (334)
                      +.+.++.+|++|+.|+..|.|-.+|+.+..+.                +...-...|.++.|       -.+.+++|++.
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~----------------~Ei~v~Etv~Dv~~-------LHneq~~AVAQ  189 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH----------------FEINVMETVRDVTF-------LHNEQFFAVAQ  189 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceee----------------eeeehhhhhhhhhh-------hcchHHHHhhh
Confidence            56788999999999999999999999998875                23334567777777       45677777764


Q ss_pred             CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEE
Q psy2305          85 MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSA  163 (334)
Q Consensus        85 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~  163 (334)
                       ...+.||| ..|..+..++.+.      .|..+.|.|-.-+|++++ .|.++--|+.+ |+.+.    .+....+.+..
T Consensus       190 -K~y~yvYD-~~GtElHClk~~~------~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~-GklVa----~~~t~~G~~~v  256 (545)
T KOG1272|consen  190 -KKYVYVYD-NNGTELHCLKRHI------RVARLEFLPYHFLLVAASEAGFLKYQDVST-GKLVA----SIRTGAGRTDV  256 (545)
T ss_pred             -hceEEEec-CCCcEEeehhhcC------chhhhcccchhheeeecccCCceEEEeech-hhhhH----HHHccCCccch
Confidence             56899999 4678888887655      789999999987777777 79999999998 66665    45556678888


Q ss_pred             EEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecc
Q psy2305         164 IAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR  243 (334)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~  243 (334)
                      +.-+|-+. .+-+|..+|+|.+|.....+++..+..|.++|.++++.++|+|+++.+ .|..++|||++... .+.++..
T Consensus       257 m~qNP~Na-Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~~-ql~t~~t  333 (545)
T KOG1272|consen  257 MKQNPYNA-VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNFY-QLHTYRT  333 (545)
T ss_pred             hhcCCccc-eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc-cccceeEeeecccc-ccceeec
Confidence            99999988 999999999999999999999999999999999999999999999999 99999999999844 3333332


Q ss_pred             cccCCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305         244 QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN  275 (334)
Q Consensus       244 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  275 (334)
                         ......+++|..| +||.+ ....+.||.
T Consensus       334 ---p~~a~~ls~Sqkg-lLA~~-~G~~v~iw~  360 (545)
T KOG1272|consen  334 ---PHPASNLSLSQKG-LLALS-YGDHVQIWK  360 (545)
T ss_pred             ---CCCcccccccccc-ceeee-cCCeeeeeh
Confidence               3344456676554 34433 445799994

>KOG1240|consensus

Probab=99.83  E-value=1.6e-17  Score=148.49  Aligned_cols=304  Identities=14%  Similarity=0.141  Sum_probs=190.8

Q ss_pred             eeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeee-eceeEEEEEEecccceecCCCcEEE
Q psy2305           4 EEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK-EGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         4 V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      |..++.++ ++.++++|+.||+|++|+...-....         ......+..+ .+..+..+..       -+.++.+|
T Consensus      1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---------~s~rS~ltys~~~sr~~~vt~-------~~~~~~~A 1114 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---------GSARSELTYSPEGSRVEKVTM-------CGNGDQFA 1114 (1431)
T ss_pred             ccceeecCCCCceEEEecCCceEEEeeehhhhcCc---------ceeeeeEEEeccCCceEEEEe-------ccCCCeEE
Confidence            45666665 45899999999999999987543210         0011222222 4456666655       34788999


Q ss_pred             EeeCCCcEEEEeCCC--CeeeE--EEcCccccccccceeEEEEcCC-CC-EEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          82 CSSMYAPIHLWDSVG--GEIKA--TYRPYNQVDEVTHAYSLAFSLD-GN-KIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~--~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      +++.||.|.+.++..  .+...  .....+.......|..-+|... +. .|+.+. .+.|..||+++. ......  ..
T Consensus      1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~-~~~w~l--k~ 1191 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR-HDAWRL--KN 1191 (1431)
T ss_pred             EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh-hhHHhh--hc
Confidence            999999999998765  21111  1111111111113333344433 23 455555 789999999863 222211  34


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEccC---CcEEEeeec-CCCeEEEE
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSSN---GILLFSGAR-KDCEIICW  229 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~---~~~l~~~~~-~d~~i~iw  229 (334)
                      ....+.|++++.+|.+. ++++|+..|.+.+||++-+.++.+.. ++..+|+.+..+|-   ....++++. ..+.+.+|
T Consensus      1192 ~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             CccccceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence            44568899999999999 99999999999999999888887764 34577888877763   345655552 46789999


Q ss_pred             EccCCCccceeeccc-----------------ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCC--CCCC----
Q psy2305         230 DLRNPGCILHTFPRQ-----------------VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLP--SSPY----  286 (334)
Q Consensus       230 d~~~~~~~~~~~~~~-----------------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~----  286 (334)
                      ++.+ +.....+...                 ..........+..-+.++.+|+.|..|+.||.......  ..|.    
T Consensus      1271 n~~~-g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~ 1349 (1431)
T KOG1240|consen 1271 NMET-GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTS 1349 (1431)
T ss_pred             eccc-CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccc
Confidence            9987 5444443322                 00111122233445568889999999999998765432  0000    


Q ss_pred             ----cc-------------------------c---------cccccceecccccccceeeeccCCCcccceeeEEeeecc
Q psy2305         287 ----EE-------------------------S---------VQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQ  328 (334)
Q Consensus       287 ----~~-------------------------~---------~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d  328 (334)
                          .+                         .         .......-..|.+.|+++++++.+ .    .+|++++.|
T Consensus      1350 ~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~-q----~llvs~s~d 1424 (1431)
T KOG1240|consen 1350 YSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSE-Q----PLLVSSSRD 1424 (1431)
T ss_pred             ccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccC-c----cEEEEecCC
Confidence                00                         0         000111123577899999995555 5    799999999


Q ss_pred             eeeee
Q psy2305         329 ITNVK  333 (334)
Q Consensus       329 ~~i~~  333 (334)
                      |.|++
T Consensus      1425 G~Iki 1429 (1431)
T KOG1240|consen 1425 GVIKI 1429 (1431)
T ss_pred             Ceeee
Confidence            99986

>KOG1963|consensus

Probab=99.83  E-value=1.8e-17  Score=143.55  Aligned_cols=246  Identities=16%  Similarity=0.245  Sum_probs=176.5

Q ss_pred             EEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC
Q psy2305           7 VDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY   86 (334)
Q Consensus         7 ~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d   86 (334)
                      -.||+|+++++... +..|.||...+++..              ..+. .+..++..+...|.    .++-.++.+++.|
T Consensus        22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i--------------~~l~-~~~a~l~s~~~~~~----~~~~~~~~~~sl~   81 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCT-GNFVKVYSTATGECI--------------TSLE-DHTAPLTSVIVLPS----SENANYLIVCSLD   81 (792)
T ss_pred             cccccCCcEEEEee-CCEEEEEecchHhhh--------------hhcc-cccCccceeeecCC----CccceEEEEEecC
Confidence            35889999887765 458999999999887              2333 35567777776552    2223578899999


Q ss_pred             CcEEEEeCCCCeeeEEEcCcccccc----------c-------------------------------------------c
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDE----------V-------------------------------------------T  113 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~----------~-------------------------------------------~  113 (334)
                      |.|++||...+.+++.+....+...          .                                           .
T Consensus        82 G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~  161 (792)
T KOG1963|consen   82 GTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ  161 (792)
T ss_pred             ccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc
Confidence            9999999988887776543211000          0                                           0


Q ss_pred             ceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC---
Q psy2305         114 HAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD---  190 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---  190 (334)
                      ...++.+++.|.+.....+..+.+|......+...... ....|...+++.+++|+++ ++|+|..||.|.+|.--.   
T Consensus       162 ~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~-~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~  239 (792)
T KOG1963|consen  162 EPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRD-ITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSD  239 (792)
T ss_pred             CCccEEEcCCceEEEEEEeeeEEEEEecccceeeccch-hhhhhcccceeEEeccccc-eEEEeccCCcEEEEecccccc
Confidence            01344445555554445556677777775332211111 2345777799999999999 999999999999997422   


Q ss_pred             -CCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC
Q psy2305         191 -GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG  269 (334)
Q Consensus       191 -~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg  269 (334)
                       ....+.+.-|...|.+++|+++|.+|++|+ .++.+.+|.+.++ + .+-+..  -...+..+.+|||+.+.+....|+
T Consensus       240 ~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG-~E~VLv~Wq~~T~-~-kqfLPR--Lgs~I~~i~vS~ds~~~sl~~~DN  314 (792)
T KOG1963|consen  240 DSETCTLLHWHHDEVNSLSFSSDGAYLLSGG-REGVLVLWQLETG-K-KQFLPR--LGSPILHIVVSPDSDLYSLVLEDN  314 (792)
T ss_pred             ccccceEEEecccccceeEEecCCceEeecc-cceEEEEEeecCC-C-cccccc--cCCeeEEEEEcCCCCeEEEEecCc
Confidence             234556778999999999999999999999 8999999999983 3 222332  367788999999999999999999


Q ss_pred             cEEEEeCCCC
Q psy2305         270 DLSIWNVNTS  279 (334)
Q Consensus       270 ~i~iwd~~~~  279 (334)
                      .|.+....+.
T Consensus       315 qI~li~~~dl  324 (792)
T KOG1963|consen  315 QIHLIKASDL  324 (792)
T ss_pred             eEEEEeccch
Confidence            9999987654

>KOG0644|consensus

Probab=99.82  E-value=5.1e-20  Score=158.20  Aligned_cols=272  Identities=15%  Similarity=0.149  Sum_probs=199.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|+|+.|...|.++++|+.|..|+||..++....              ...++ |.+.|++++-       +.++.+++
T Consensus       191 naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--------------As~rG-hs~ditdlav-------s~~n~~ia  248 (1113)
T KOG0644|consen  191 NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--------------ASCRG-HSGDITDLAV-------SSNNTMIA  248 (1113)
T ss_pred             hheeeeeeccccceEeecCccceeeeeeccchhhh--------------ccCCC-Cccccchhcc-------chhhhhhh
Confidence            57999999999999999999999999999888765              45555 4566766544       66788899


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      +++.|..|++|.+.++..+..+.+|..     .|++++|+|-.   .++.||++++||.+-........++.+ ....-+
T Consensus       249 aaS~D~vIrvWrl~~~~pvsvLrghtg-----avtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~  319 (1113)
T KOG0644|consen  249 AASNDKVIRVWRLPDGAPVSVLRGHTG-----AVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKF-TEKDLV  319 (1113)
T ss_pred             hcccCceEEEEecCCCchHHHHhcccc-----ceeeeccCccc---cCCCCCceEeccccccccccCCCCCCc-ccccce
Confidence            999999999999999999998888665     99999999964   334499999999883122222222222 223556


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC-cEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      .++.|..++. -+++++.|+.-..|.+..-      ..+...+.-+.++.+- .+.+++- .+-.+++|++.. +.....
T Consensus       320 ~s~~~~~~~~-~f~Tgs~d~ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar-~~~~~~vwnl~~-g~l~H~  390 (1113)
T KOG0644|consen  320 DSILFENNGD-RFLTGSRDGEARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTAR-NDHRLCVWNLYT-GQLLHN  390 (1113)
T ss_pred             eeeecccccc-ccccccCCcccccchhhHh------hhhccceEEEeccccccccceeee-eeeEeeeeeccc-chhhhh
Confidence            7778888888 8999999998888876432      1122222222232232 3444554 788999999998 777777


Q ss_pred             ecccccCCceEEEEecCCCce-EEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccce
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNY-LLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLL  319 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~  319 (334)
                      +.+|  ...+..+.++|-... ..+++.||...|||+..+            .+++.+....+.+.+.+|  +++|    
T Consensus       391 l~gh--sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg------------~pik~y~~gh~kl~d~kF--Sqdg----  450 (1113)
T KOG0644|consen  391 LMGH--SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG------------IPIKHYFIGHGKLVDGKF--SQDG----  450 (1113)
T ss_pred             hccc--ccceeeeeecCCCcHhhhhccCCCceEeeecccC------------Ccceeeecccceeecccc--CCCC----
Confidence            7777  445566778996654 458899999999999988            344433333456778899  9999    


Q ss_pred             eeEEeeecceeeee
Q psy2305         320 VADATCSGQITNVK  333 (334)
Q Consensus       320 ~~l~t~~~d~~i~~  333 (334)
                      ..++....-|.++|
T Consensus       451 ts~~lsd~hgql~i  464 (1113)
T KOG0644|consen  451 TSIALSDDHGQLYI  464 (1113)
T ss_pred             ceEecCCCCCceEE
Confidence            88888777777776

>KOG1524|consensus

Probab=99.82  E-value=5.3e-19  Score=145.06  Aligned_cols=208  Identities=14%  Similarity=0.148  Sum_probs=161.0

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEe
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWD   93 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd   93 (334)
                      ..|+.++.||.+.|.+-.... .              ..+. .|.+.+.+-.|       +|||.-|++++.||.|++|.
T Consensus        76 d~~~i~s~DGkf~il~k~~rV-E--------------~sv~-AH~~A~~~gRW-------~~dGtgLlt~GEDG~iKiWS  132 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSARV-E--------------RSIS-AHAAAISSGRW-------SPDGAGLLTAGEDGVIKIWS  132 (737)
T ss_pred             ceEEEEcCCceEEEecccchh-h--------------hhhh-hhhhhhhhccc-------CCCCceeeeecCCceEEEEe
Confidence            468888999999998754332 2              2333 36677888788       67999999999999999998


Q ss_pred             CCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcE
Q psy2305          94 SVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDI  173 (334)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  173 (334)
                       ++|-+..++.....     +|+|++|.|+.+.++.+..+.+.|=-+....+.+     ....|.+-|.++.|++..+ +
T Consensus       133 -rsGMLRStl~Q~~~-----~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i-----~WkAHDGiiL~~~W~~~s~-l  200 (737)
T KOG1524|consen  133 -RSGMLRSTVVQNEE-----SIRCARWAPNSNSIVFCQGGHISIKPLAANSKII-----RWRAHDGLVLSLSWSTQSN-I  200 (737)
T ss_pred             -ccchHHHHHhhcCc-----eeEEEEECCCCCceEEecCCeEEEeeccccccee-----EEeccCcEEEEeecCcccc-c
Confidence             46665554443333     8999999999988887776677776666433333     4789999999999999999 9


Q ss_pred             EEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEE
Q psy2305         174 CALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYF  253 (334)
Q Consensus       174 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  253 (334)
                      +++|++|-..++||. .|..+..-..|+-+|++++|.|+ +.++.++  -.+++             +.. ...+.+..+
T Consensus       201 I~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S--~nt~R-------------~~~-p~~GSifnl  262 (737)
T KOG1524|consen  201 IASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWS--YNTAR-------------FSS-PRVGSIFNL  262 (737)
T ss_pred             eeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeee--eeeee-------------ecC-CCccceEEE
Confidence            999999999999995 57777777889999999999999 6666776  33444             111 125668889


Q ss_pred             EecCCCceEEeeecCCcEEEE
Q psy2305         254 DLTSCSNYLLSGNTNGDLSIW  274 (334)
Q Consensus       254 ~~s~~~~~l~~~~~dg~i~iw  274 (334)
                      +||+||..++.|...|.+.+-
T Consensus       263 sWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  263 SWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             EEcCCCceeeccccCceEEEe
Confidence            999999999999998877654

>KOG1009|consensus

Probab=99.82  E-value=1.1e-18  Score=138.46  Aligned_cols=200  Identities=13%  Similarity=0.125  Sum_probs=148.4

Q ss_pred             eeeeeeceeEEEEEEecccceecCCCc-EEEEeeCCCcEEEEeCCCCe------e---eEEEcCccccccccceeEEEEc
Q psy2305          52 TLKIKEGGIIYDYVWYPKTSSIDGFTS-YFLCSSMYAPIHLWDSVGGE------I---KATYRPYNQVDEVTHAYSLAFS  121 (334)
Q Consensus        52 ~~~~~~~~~v~~~~~~~~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~------~---~~~~~~~~~~~~~~~v~~~~~~  121 (334)
                      .+.-|...+++.+.|.+       +.. .+++|+.|..|++|-+..+.      .   ...+..|..     .|+++.|+
T Consensus         7 ei~wH~~~pv~s~dfq~-------n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~-----aVN~vRf~   74 (434)
T KOG1009|consen    7 EISWHDHEPVYSVDFQK-------NSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTR-----AVNVVRFS   74 (434)
T ss_pred             EEEecCCCceEEEEecc-------CcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcc-----eeEEEEEc
Confidence            34445667888888854       333 89999999999999765322      1   233443333     89999999


Q ss_pred             CCCCEEEEee-CCcEEEEEcCC------CC-----CeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC
Q psy2305         122 LDGNKIYAGF-LSEVKIFSTDR------PG-----RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS  189 (334)
Q Consensus       122 ~~~~~l~~~~-d~~i~i~d~~~------~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  189 (334)
                      |+|..|++|+ +|.+.+|....      ..     ++.......+.+|...+..++|+|++. ++++++.|..+++||+.
T Consensus        75 p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~  153 (434)
T KOG1009|consen   75 PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVH  153 (434)
T ss_pred             CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEec
Confidence            9999999998 79999998761      01     111111115677999999999999999 99999999999999999


Q ss_pred             CCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee---------------------ecccccCC
Q psy2305         190 DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT---------------------FPRQVSTN  248 (334)
Q Consensus       190 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~---------------------~~~~~~~~  248 (334)
                      .|+....+..|...+..++|.|-++++++-+ .|...+.+.+.. .+..+.                     +.......
T Consensus       154 ~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s-~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlks  231 (434)
T KOG1009|consen  154 AGQLLAILDDHEHYVQGVAWDPLNQYVASKS-SDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKS  231 (434)
T ss_pred             cceeEeeccccccccceeecchhhhhhhhhc-cCcccceeeeee-eeeeeeeeeeEeeecccCCCCcceeeeeecCchhh
Confidence            9999999999999999999999999999998 788777776654 211111                     11111122


Q ss_pred             ceEEEEecCCCceEEeee
Q psy2305         249 QRVYFDLTSCSNYLLSGN  266 (334)
Q Consensus       249 ~~~~~~~s~~~~~l~~~~  266 (334)
                      ....++|+|+|.+|++..
T Consensus       232 FFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  232 FFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             hhhhcccCCCCcEEEccc
Confidence            234578999999998764

>KOG0642|consensus

Probab=99.82  E-value=4.3e-19  Score=146.25  Aligned_cols=251  Identities=14%  Similarity=0.214  Sum_probs=175.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      |.|+.++|.|-...|++++.||++++|+++....      ......+...++++ |.++|.+++.       .++++.++
T Consensus       295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~------s~~~~~epi~tfra-H~gPVl~v~v-------~~n~~~~y  360 (577)
T KOG0642|consen  295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK------SAEKDVEPILTFRA-HEGPVLCVVV-------PSNGEHCY  360 (577)
T ss_pred             hhhhhhhcCCCCCeEEEeccccchhhhhhcccCC------ccccceeeeEEEec-ccCceEEEEe-------cCCceEEE
Confidence            5678889999999999999999999999943111      11111223345555 5588888776       67999999


Q ss_pred             EeeCCCcEEEEeCCCC----------eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeee
Q psy2305          82 CSSMYAPIHLWDSVGG----------EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~  150 (334)
                      +|+.||+|+.|++...          .....+.+|..     .|+.+++|+....|++++ ||++++|+... ...+.. 
T Consensus       361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-----avw~l~~s~~~~~Llscs~DgTvr~w~~~~-~~~~~f-  433 (577)
T KOG0642|consen  361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-----AVWLLALSSTKDRLLSCSSDGTVRLWEPTE-ESPCTF-  433 (577)
T ss_pred             eeccCceeeeeccCCCCCcccccCcchhccceecccc-----ceeeeeecccccceeeecCCceEEeeccCC-cCcccc-
Confidence            9999999999965421          12233444333     899999999988898876 99999999875 222110 


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc-------CCCCeEEEEEccCCcEEEeeecCC
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG-------HNGGITHLEFSSNGILLFSGARKD  223 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~~d  223 (334)
                        ......+...++.+-.......++...-+.-.+++++....+..+..       ....+..+.++|.+...+++. .|
T Consensus       434 --~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h-ed  510 (577)
T KOG0642|consen  434 --GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH-ED  510 (577)
T ss_pred             --CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc-cC
Confidence              11122233455665444321233333333344445444444444421       123467788999999999999 99


Q ss_pred             CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       224 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      +.|+++|..+ +.++.....|  ...+.++++.|+|-+|++++.|+.+++|.+...
T Consensus       511 ~~Ir~~dn~~-~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  511 RSIRFFDNKT-GKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             Cceecccccc-cccchheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence            9999999998 7777777666  667788999999999999999999999999775

>KOG1272|consensus

Probab=99.82  E-value=6.6e-20  Score=147.67  Aligned_cols=218  Identities=10%  Similarity=0.106  Sum_probs=185.5

Q ss_pred             EEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCC
Q psy2305          65 VWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPG  144 (334)
Q Consensus        65 ~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~  144 (334)
                      .|.|..+.++.+|++|+.+++.|.|..+|..++++...+....      .|..+.|-.+.+++|++..+.+.|||-.  |
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E------tv~Dv~~LHneq~~AVAQK~y~yvYD~~--G  200 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME------TVRDVTFLHNEQFFAVAQKKYVYVYDNN--G  200 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh------hhhhhhhhcchHHHHhhhhceEEEecCC--C
Confidence            4566667779999999999999999999999999988887644      7899999999999999999999999977  6


Q ss_pred             CeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305         145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                      ..+.    .+..| ..|..+.|-|..- +|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|. ..|
T Consensus       201 tElH----Clk~~-~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh-snG  273 (545)
T KOG1272|consen  201 TELH----CLKRH-IRVARLEFLPYHF-LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH-SNG  273 (545)
T ss_pred             cEEe----ehhhc-Cchhhhcccchhh-eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC-CCc
Confidence            6665    34443 6788999999987 899999999999999999999999988889999999999888999999 899


Q ss_pred             eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccccc
Q psy2305         225 EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCT  304 (334)
Q Consensus       225 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  304 (334)
                      ++.+|...+ ..++..+..|  .+.+.++++.++|+|+++.+.|..++|||++.-            ..+.++.. .-..
T Consensus       274 tVSlWSP~s-kePLvKiLcH--~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~------------~ql~t~~t-p~~a  337 (545)
T KOG1272|consen  274 TVSLWSPNS-KEPLVKILCH--RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF------------YQLHTYRT-PHPA  337 (545)
T ss_pred             eEEecCCCC-cchHHHHHhc--CCCcceEEECCCCcEEeecccccceeEeeeccc------------cccceeec-CCCc
Confidence            999999998 6777766666  778889999999999999999999999999986            33333332 2356


Q ss_pred             ceeeeccCCCc
Q psy2305         305 NGVRWKHHKFE  315 (334)
Q Consensus       305 ~~~~~~~s~~~  315 (334)
                      ..+++  |..|
T Consensus       338 ~~ls~--Sqkg  346 (545)
T KOG1272|consen  338 SNLSL--SQKG  346 (545)
T ss_pred             ccccc--cccc
Confidence            77888  7777

>KOG1963|consensus

Probab=99.82  E-value=4.5e-17  Score=141.05  Aligned_cols=292  Identities=12%  Similarity=0.075  Sum_probs=190.4

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCC--CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPS--ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|.++||+++++|+|..||.|.+|.--.  ....            ....+.- |...|.++.|       +++|.+|+
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~------------t~t~lHW-H~~~V~~L~f-------S~~G~~Ll  267 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE------------TCTLLHW-HHDEVNSLSF-------SSDGAYLL  267 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccccccc------------cceEEEe-cccccceeEE-------ecCCceEe
Confidence            68999999999999999999999997443  2111            1123333 3356776666       78999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-eCCcEEEEEcCCCCCe--eeeecc----cc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPGRE--CVSRNL----KP  154 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~--~~~~~~----~~  154 (334)
                      +|+.++.+.+|.+.+++ .+-+...+.     +|..+.++||+.+.+.. .|+.|.+.........  +.....    ..
T Consensus       268 SGG~E~VLv~Wq~~T~~-kqfLPRLgs-----~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k  341 (792)
T KOG1963|consen  268 SGGREGVLVLWQLETGK-KQFLPRLGS-----PILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK  341 (792)
T ss_pred             ecccceEEEEEeecCCC-cccccccCC-----eeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence            99999999999999887 334444344     89999999999888765 4999999876431110  000000    01


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-----------cCCCCeEEEEEccCCcEEEeeec--
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-----------GHNGGITHLEFSSNGILLFSGAR--  221 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~--  221 (334)
                      ....+-.+.++++|.-+ .++..+..|.|.+||+.+.+.+..+.           .+.-.++.++.+..|.++++.-.  
T Consensus       342 ~~~~~l~t~~~idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~  420 (792)
T KOG1963|consen  342 TRPQSLTTGVSIDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARI  420 (792)
T ss_pred             ccccccceeEEEcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeee
Confidence            12345577889999655 77788899999999998877666552           12234677888888999887631  


Q ss_pred             -----C--CCeEEEEEccCCCcc---ceeecccccCCceEE-EEecCCCc-eEEeeecCCcEEEEeCCCCCCCCCCCccc
Q psy2305         222 -----K--DCEIICWDLRNPGCI---LHTFPRQVSTNQRVY-FDLTSCSN-YLLSGNTNGDLSIWNVNTSNLPSSPYEES  289 (334)
Q Consensus       222 -----~--d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~-~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  289 (334)
                           .  .-.+++|-.....+.   ...+.. .++..... +..++... .+++++.||.++||-+...+......  .
T Consensus       421 d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~-PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~--s  497 (792)
T KOG1963|consen  421 DKFNFFDGEVSLKFWQYNPNSKTFILNTKINN-PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS--S  497 (792)
T ss_pred             hhhhccCceEEEEEEEEcCCcceeEEEEEEec-CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc--c
Confidence                 2  235788987652221   112221 12332222 33344333 88999999999999985543221111  1


Q ss_pred             cccccceecccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         290 VQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       290 ~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      .|.+...-.-|..++++++|  +.||    .. +++|.|++|.
T Consensus       498 ~W~c~~i~sy~k~~i~a~~f--s~dG----sl-la~s~~~~It  533 (792)
T KOG1963|consen  498 NWTCKAIGSYHKTPITALCF--SQDG----SL-LAVSFDDTIT  533 (792)
T ss_pred             ceEEeeeeccccCcccchhh--cCCC----cE-EEEecCCEEE
Confidence            23333333346788999999  9999    65 4555555554

>KOG1188|consensus

Probab=99.82  E-value=3.3e-18  Score=132.92  Aligned_cols=193  Identities=14%  Similarity=0.131  Sum_probs=146.0

Q ss_pred             cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      ..+|++-..|.|++||..+++.+..++.+..     .+..++|..+  ...+.+++ ||+|++||++..++....   ..
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~-----~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~---~~  112 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-----TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI---SW  112 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCC-----cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe---ec
Confidence            4588888899999999999999999988665     6678888773  44555665 999999999985554443   34


Q ss_pred             cccc-cceEEEEEcCCCCcEEEEeec----CCeEEEEECCCCCc-eEee-ccCCCCeEEEEEccC-CcEEEeeecCCCeE
Q psy2305         155 WFRK-NIVSAIAINPVHPDICALGTY----SKIIGLFSDSDGRP-LFFL-KGHNGGITHLEFSSN-GILLFSGARKDCEI  226 (334)
Q Consensus       155 ~~~~-~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~-~~~~~~i~~~~~~~~-~~~l~~~~~~d~~i  226 (334)
                      ..+. .+..+++.+-+++ ++++|++    +-.|.+||+|..+. +..+ ..|...|+++.|+|. .++|++|+ .||.+
T Consensus       113 ~~~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS-vDGLv  190 (376)
T KOG1188|consen  113 TQQSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS-VDGLV  190 (376)
T ss_pred             cCCCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec-ccceE
Confidence            4554 5777888877777 8888753    56799999998765 5554 679999999999995 56899999 89999


Q ss_pred             EEEEccCCCccceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCC
Q psy2305         227 ICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       227 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      .+||+..+...-..+..-.....+..+.|..++ +.+.+-+..+...+|+++.+.
T Consensus       191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            999998642211111111134557788898877 457788889999999999885

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=8.9e-17  Score=138.42  Aligned_cols=234  Identities=12%  Similarity=0.100  Sum_probs=155.2

Q ss_pred             eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC---CCcEEEEeCCCCeee
Q psy2305          24 HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM---YAPIHLWDSVGGEIK  100 (334)
Q Consensus        24 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~---d~~i~iwd~~~~~~~  100 (334)
                      .|.++|.+.....               .+.. ....+...+|       ||||+.|+..+.   +..|.+|++.+++..
T Consensus       180 ~l~~~d~dg~~~~---------------~lt~-~~~~~~~p~w-------SPDG~~la~~s~~~g~~~i~i~dl~~G~~~  236 (429)
T PRK03629        180 ELRVSDYDGYNQF---------------VVHR-SPQPLMSPAW-------SPDGSKLAYVTFESGRSALVIQTLANGAVR  236 (429)
T ss_pred             eEEEEcCCCCCCE---------------Eeec-CCCceeeeEE-------cCCCCEEEEEEecCCCcEEEEEECCCCCeE
Confidence            6888888766543               2322 3356777777       779999887542   347999999887644


Q ss_pred             EEEcCccccccccceeEEEEcCCCCEEEEe-e-CC--cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEE
Q psy2305         101 ATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LS--EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICAL  176 (334)
Q Consensus       101 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  176 (334)
                      .......      .+..++|+|||+.|+.. . ++  .|.+||+.+ +. ..    .+..+...+....|+|+|+ .|+.
T Consensus       237 ~l~~~~~------~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~-~~----~lt~~~~~~~~~~wSPDG~-~I~f  303 (429)
T PRK03629        237 QVASFPR------HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQ-IR----QVTDGRSNNTEPTWFPDSQ-NLAY  303 (429)
T ss_pred             EccCCCC------CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CC-EE----EccCCCCCcCceEECCCCC-EEEE
Confidence            3322211      34568999999988854 3 44  588889875 33 33    2333445678899999999 7766


Q ss_pred             eecC-C--eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC--CeEEEEEccCCCccceeecccccCCceE
Q psy2305         177 GTYS-K--IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD--CEIICWDLRNPGCILHTFPRQVSTNQRV  251 (334)
Q Consensus       177 ~~~d-g--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~  251 (334)
                      .+.+ +  .|+++|+.+++. ..+..+........|+|+|++|+..+..+  ..|.+||+.+ +. ...+...   ....
T Consensus       304 ~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~---~~~~  377 (429)
T PRK03629        304 TSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTDT---FLDE  377 (429)
T ss_pred             EeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCCC---CCCC
Confidence            5543 4  455557666544 34443444566789999999998766223  3588889876 43 3344322   1123


Q ss_pred             EEEecCCCceEEeeecCCc---EEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCC
Q psy2305         252 YFDLTSCSNYLLSGNTNGD---LSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       252 ~~~~s~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                      ...|+|||++|+.++.++.   +.++++..             .....+.+|.+.+...+|  +|-
T Consensus       378 ~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G-------------~~~~~l~~~~~~~~~p~W--sp~  428 (429)
T PRK03629        378 TPSIAPNGTMVIYSSSQGMGSVLNLVSTDG-------------RFKARLPATDGQVKFPAW--SPY  428 (429)
T ss_pred             CceECCCCCEEEEEEcCCCceEEEEEECCC-------------CCeEECccCCCCcCCccc--CCC
Confidence            4679999999998887754   67778855             345667777888999999  873

>KOG1523|consensus

Probab=99.81  E-value=4.1e-18  Score=131.32  Aligned_cols=209  Identities=14%  Similarity=0.097  Sum_probs=160.4

Q ss_pred             ceeEEEEcCCCCEEEEee-CCcEEEEEcCCCC-CeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC
Q psy2305         114 HAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPG-RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG  191 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  191 (334)
                      +|+|.+|++|+..++.+- ...|.||.....+ -....   ++..|...|+++.|+|..+ .|++++.|..-++|....+
T Consensus        12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~h---tls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen   12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAH---TLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ceeeeeecCCCceEEeccCCceEEEEEecCCCCceece---ehhhhCcceeEEeecCCCC-ceeEccCCCCccccccCCC
Confidence            899999999999999886 7899999988522 11222   6889999999999999998 8999999999999998443


Q ss_pred             ---CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc-ceeecccccCCceEEEEecCCCceEEeeec
Q psy2305         192 ---RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI-LHTFPRQVSTNQRVYFDLTSCSNYLLSGNT  267 (334)
Q Consensus       192 ---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  267 (334)
                         ++.-.+..++...+++.|+|.++.+++|+ ....|.+|-++....- +....+......+.+++|+|++-+|++|+.
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgS-gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~  166 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGS-GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST  166 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEecc-CccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence               45566677899999999999999999999 8999999988752221 111122223567899999999999999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCcc-----cc-ccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         268 NGDLSIWNVNTSNLPSSPYEE-----SV-QEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       268 dg~i~iwd~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |+..++|..--......|...     .+ .+.+.++....+.+..+.|  +|.|    ..|+-.+.|..+.+
T Consensus       167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f--s~sG----~~lawv~Hds~v~~  232 (361)
T KOG1523|consen  167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF--SPSG----NRLAWVGHDSTVSF  232 (361)
T ss_pred             CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe--CCCC----CEeeEecCCCceEE
Confidence            999999975433222222111     11 1223334345678999999  9999    99999999998764

>KOG0642|consensus

Probab=99.81  E-value=7.9e-19  Score=144.72  Aligned_cols=235  Identities=11%  Similarity=0.051  Sum_probs=168.5

Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCCC--------CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcC
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSVG--------GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTD  141 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~  141 (334)
                      ++|.|....|++++.||.+++|+++.        -+.+.+|..|..     +|.|+++.+++.++++|+ ||+|+.|++.
T Consensus       300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g-----PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p  374 (577)
T KOG0642|consen  300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG-----PVLCVVVPSNGEHCYSGGIDGTIRCWNLP  374 (577)
T ss_pred             hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC-----ceEEEEecCCceEEEeeccCceeeeeccC
Confidence            44567788899999999999999932        123455666554     999999999999999998 9999999776


Q ss_pred             CCCCeee-----eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc--CCCCeEEEEEccCCc
Q psy2305         142 RPGRECV-----SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG--HNGGITHLEFSSNGI  214 (334)
Q Consensus       142 ~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~  214 (334)
                      .......     ...-.+.+|.+.+..+++++... .|++++.||++++|+.....+ .++..  ..+.-.++.+.....
T Consensus       375 ~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~  452 (577)
T KOG0642|consen  375 PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRP  452 (577)
T ss_pred             CCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchh
Confidence            3211111     11115789999999999999998 899999999999999866555 33322  122334555543331


Q ss_pred             -EEEeeecCCCeEEEEEccCCCccceeeccccc-----CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcc
Q psy2305         215 -LLFSGARKDCEIICWDLRNPGCILHTFPRQVS-----TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEE  288 (334)
Q Consensus       215 -~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  288 (334)
                       ..++.. .-+.--++++.. ...+..+.....     ...+..+.++|.+.+.+++..|+.|+++|..++         
T Consensus       453 a~~~~s~-~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~---------  521 (577)
T KOG0642|consen  453 AHSLASF-RFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG---------  521 (577)
T ss_pred             Hhhhhhc-ccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc---------
Confidence             222222 233333444443 222333322111     233455778999999999999999999999998         


Q ss_pred             ccccccceecccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         289 SVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       289 ~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                         .++.....|...++++++  .|+|    .+|++++.|+.+.
T Consensus       522 ---~~l~s~~a~~~svtslai--~~ng----~~l~s~s~d~sv~  556 (577)
T KOG0642|consen  522 ---KILHSMVAHKDSVTSLAI--DPNG----PYLMSGSHDGSVR  556 (577)
T ss_pred             ---ccchheeeccceecceee--cCCC----ceEEeecCCceee
Confidence               788899999999999999  9999    9999999999874

>KOG4497|consensus

Probab=99.80  E-value=2.9e-17  Score=127.33  Aligned_cols=270  Identities=15%  Similarity=0.159  Sum_probs=175.1

Q ss_pred             EEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE-Eee
Q psy2305           6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL-CSS   84 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~-~~~   84 (334)
                      -++|||+|+++|+++.- .+.|=|.++-+..+              .+..  -..|.-+.|       ..|..+++ ...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q--------------lf~c--ldki~yieW-------~ads~~ilC~~y   68 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ--------------LFLC--LDKIVYIEW-------KADSCHILCVAY   68 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHH--------------HHHH--HHHhhheee-------eccceeeeeeee
Confidence            36899999999999765 67787888776541              2211  244555666       45666654 456


Q ss_pred             CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          85 MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        85 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      .++.|.+|++...+....+.....     ++..++|||||+.++.. . +-.|.+|.+.+. +...     +...+..+.
T Consensus        69 k~~~vqvwsl~Qpew~ckIdeg~a-----gls~~~WSPdgrhiL~tseF~lriTVWSL~t~-~~~~-----~~~pK~~~k  137 (447)
T KOG4497|consen   69 KDPKVQVWSLVQPEWYCKIDEGQA-----GLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-KGYL-----LPHPKTNVK  137 (447)
T ss_pred             ccceEEEEEeecceeEEEeccCCC-----cceeeeECCCcceEeeeecceeEEEEEEeccc-eeEE-----ecccccCce
Confidence            788999999988887777765333     88999999999877744 4 899999999962 2221     233344568


Q ss_pred             EEEEcCCCCcEEEEeecCC------------------------------------eEEEEECCCCCceEeeccCCCCeEE
Q psy2305         163 AIAINPVHPDICALGTYSK------------------------------------IIGLFSDSDGRPLFFLKGHNGGITH  206 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~~~~~~~~~~~~~~i~~  206 (334)
                      .++|+|+|+ +.+..+...                                    .+.+||---.-.+..+. -.-.+..
T Consensus       138 g~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~  215 (447)
T KOG4497|consen  138 GYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKF  215 (447)
T ss_pred             eEEECCCCc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeE
Confidence            889999998 766654322                                    23333321111111111 2245788


Q ss_pred             EEEccCCcEEEeeecCCCeEEEEEccCC---Cc---------------------c-------------------------
Q psy2305         207 LEFSSNGILLFSGARKDCEIICWDLRNP---GC---------------------I-------------------------  237 (334)
Q Consensus       207 ~~~~~~~~~l~~~~~~d~~i~iwd~~~~---~~---------------------~-------------------------  237 (334)
                      ++|+|.+++|++|+ .|+.+++.+--+.   ++                     .                         
T Consensus       216 v~wsP~~qflavGs-yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~  294 (447)
T KOG4497|consen  216 VEWSPCNQFLAVGS-YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESET  294 (447)
T ss_pred             EEeccccceEEeec-cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchh
Confidence            99999999999999 8988887543210   00                     0                         


Q ss_pred             ----------ceeec----ccccCCceEEEEecCCCceEEeeec--CCcEEEEeCCCCCCCCCCCccccccccceecccc
Q psy2305         238 ----------LHTFP----RQVSTNQRVYFDLTSCSNYLLSGNT--NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ  301 (334)
Q Consensus       238 ----------~~~~~----~~~~~~~~~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (334)
                                +..++    .......+.-++|++|..|+++-..  -+.+-+||++..            +. .......
T Consensus       295 ~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l------------~l-~avLiQk  361 (447)
T KOG4497|consen  295 IYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL------------KL-HAVLIQK  361 (447)
T ss_pred             hhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh------------hh-hhhhhhc
Confidence                      00000    0001122345789999999998754  367999999986            33 3333345


Q ss_pred             cccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         302 DCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       302 ~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      .+|....|  +|..    ..|+.+....+++
T Consensus       362 ~piraf~W--dP~~----prL~vctg~srLY  386 (447)
T KOG4497|consen  362 HPIRAFEW--DPGR----PRLVVCTGKSRLY  386 (447)
T ss_pred             cceeEEEe--CCCC----ceEEEEcCCceEE
Confidence            67999999  9998    7777665554443

>KOG2110|consensus

Probab=99.80  E-value=4.7e-16  Score=122.31  Aligned_cols=156  Identities=15%  Similarity=0.120  Sum_probs=124.9

Q ss_pred             eeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e--CCcE
Q psy2305          59 GIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F--LSEV  135 (334)
Q Consensus        59 ~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~--d~~i  135 (334)
                      ..|.++..         +.+.|+++-.+. |.|||+++.+.+.++.....  .+..+..+.+++.+.+|+.- +  .|.|
T Consensus        88 t~IL~Vrm---------Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~--n~~gl~AlS~n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   88 TSILAVRM---------NRKRLVVCLEES-IYIYDIKDMKLLHTIETTPP--NPKGLCALSPNNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             CceEEEEE---------ccceEEEEEccc-EEEEecccceeehhhhccCC--CccceEeeccCCCCceEEecCCCCCceE
Confidence            45555555         666777776554 99999999999888765311  11257777777778899842 2  6999


Q ss_pred             EEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCe-EEEEECCCCCceEeeccCC--CCeEEEEEccC
Q psy2305         136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKI-IGLFSDSDGRPLFFLKGHN--GGITHLEFSSN  212 (334)
Q Consensus       136 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~  212 (334)
                      .+||+.+ -+...    .+..|++.+.+++|+++|. +||++++.|+ ||+|.+.+|+.+.+|....  ..|.+++|+|+
T Consensus       156 ~l~d~~n-l~~v~----~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  156 VLFDTIN-LQPVN----TINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD  229 (391)
T ss_pred             EEEEccc-ceeee----EEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence            9999986 33333    5679999999999999999 9999999997 7899999999999986543  46889999999


Q ss_pred             CcEEEeeecCCCeEEEEEccC
Q psy2305         213 GILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       213 ~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      +++|.+.+ ..++|.++.+..
T Consensus       230 s~~L~~sS-~TeTVHiFKL~~  249 (391)
T KOG2110|consen  230 SQFLAASS-NTETVHIFKLEK  249 (391)
T ss_pred             CCeEEEec-CCCeEEEEEecc
Confidence            99999999 899999999864

>KOG1517|consensus

Probab=99.79  E-value=1.5e-17  Score=146.64  Aligned_cols=255  Identities=17%  Similarity=0.200  Sum_probs=171.1

Q ss_pred             eeEEEEcC--CCcEEEEeeCCCeEEEEECCCCC-ceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           4 EEDVDEAP--DGTCLLTNSNDNHLRTFDLPSEL-HCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         4 V~~~~~sp--~~~~l~~~~~d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      |..+.+-.  |..+|++|+.||.||||+-.... ....+......+.++...-++  .+  .-+.|       .....+|
T Consensus      1112 Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~--~~--~v~dW-------qQ~~G~L 1180 (1387)
T KOG1517|consen 1112 VSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARG--TG--LVVDW-------QQQSGHL 1180 (1387)
T ss_pred             cceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCC--CC--eeeeh-------hhhCCeE
Confidence            55666643  45689999999999999754332 111111111111111111111  11  12234       4455566


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      ++++.-..|+|||.........+.....    ..|+++.-+- .|+.+++|. ||.|++||.+.........  ....|.
T Consensus      1181 l~tGd~r~IRIWDa~~E~~~~diP~~s~----t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~--~~R~h~ 1254 (1387)
T KOG1517|consen 1181 LVTGDVRSIRIWDAHKEQVVADIPYGSS----TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC--VYREHN 1254 (1387)
T ss_pred             EecCCeeEEEEEecccceeEeecccCCC----ccceeecccccCCceEEEeecCCceEEeecccCCccccce--eecccC
Confidence            6666678999999988777766654322    1566665443 368888997 9999999998744421110  456777


Q ss_pred             cc--eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee--ccCC--C-CeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305         159 NI--VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--KGHN--G-GITHLEFSSNGILLFSGARKDCEIICWDL  231 (334)
Q Consensus       159 ~~--v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~--~-~i~~~~~~~~~~~l~~~~~~d~~i~iwd~  231 (334)
                      ..  |..+.+.+.|-..|++|+.+|.|++||++.......+  ..|.  + ..+++..+++...+++|+ . +.|+||++
T Consensus      1255 ~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs-~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS-A-QLIKIYSL 1332 (1387)
T ss_pred             CcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC-c-ceEEEEec
Confidence            76  9999999988756999999999999999874322222  2222  3 589999999999999998 6 99999999


Q ss_pred             cCCCccceeeccc-----ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         232 RNPGCILHTFPRQ-----VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       232 ~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .  ++.+..+..+     .....+.+++|+|..-++|+|+.|..|.||.....
T Consensus      1333 ~--G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1333 S--GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             C--hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            8  4444444322     12345688999999999999999999999988765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=1.6e-17  Score=143.32  Aligned_cols=213  Identities=14%  Similarity=0.056  Sum_probs=142.5

Q ss_pred             ceeEEEEcCCCcEEEEeeCC---CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           3 IEEDVDEAPDGTCLLTNSND---NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      .+.+++|||||++|+..+.+   ..|++||+.+++..               .+... .+.....+       |+|||+.
T Consensus       205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~---------------~l~~~-~g~~~~~~-------wSPDG~~  261 (429)
T PRK01742        205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK---------------VVASF-RGHNGAPA-------FSPDGSR  261 (429)
T ss_pred             ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE---------------EEecC-CCccCcee-------ECCCCCE
Confidence            57889999999999887643   47999999887643               11111 11222344       4889998


Q ss_pred             EEEee-CCCcEEEE--eCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccc
Q psy2305          80 FLCSS-MYAPIHLW--DSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        80 l~~~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      |+.++ .+|.+.||  |+.+++.. .+..+..     .+....|+|||+.|+..+  ++...+|+++..+.....    .
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~-----~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~----l  331 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGTPS-QLTSGAG-----NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL----V  331 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCCeE-eeccCCC-----CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----e
Confidence            88764 67765555  66665543 3433222     567899999999887554  688899988653333321    2


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC-
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN-  233 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~-  233 (334)
                       .+..  ....|+|+|+ .|+..+.++ +.+||+.+++.......+  ....+.|+|+|++|++++ .++...+|++.. 
T Consensus       332 -~~~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s-~~g~~~~l~~~~~  403 (429)
T PRK01742        332 -GGRG--YSAQISADGK-TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS-TQGLGKVLQLVSA  403 (429)
T ss_pred             -cCCC--CCccCCCCCC-EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEE-cCCCceEEEEEEC
Confidence             2222  4578999999 887776654 666999888654332222  235688999999999999 788888887642 


Q ss_pred             CCccceeecccccCCceEEEEecCC
Q psy2305         234 PGCILHTFPRQVSTNQRVYFDLTSC  258 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~  258 (334)
                      .+.....+..+  ...+...+|+|-
T Consensus       404 ~G~~~~~l~~~--~g~~~~p~wsp~  426 (429)
T PRK01742        404 DGRFKARLPGS--DGQVKFPAWSPY  426 (429)
T ss_pred             CCCceEEccCC--CCCCCCcccCCC
Confidence            25666667644  345566778874

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=1.2e-16  Score=137.71  Aligned_cols=217  Identities=14%  Similarity=0.108  Sum_probs=139.3

Q ss_pred             ceeEEEEEEecccceecCCCcEEEEeeCC---CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEE-ee-C
Q psy2305          58 GGIIYDYVWYPKTSSIDGFTSYFLCSSMY---APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA-GF-L  132 (334)
Q Consensus        58 ~~~v~~~~~~~~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-d  132 (334)
                      ...+...+|       +|||+.|+..+.+   ..|.+||+.+++....... ..     .+...+|+|||+.|+. .+ +
T Consensus       195 ~~~v~~p~w-------SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~g-----~~~~~~~SPDG~~la~~~~~~  261 (427)
T PRK02889        195 PEPIISPAW-------SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-KG-----SNSAPAWSPDGRTLAVALSRD  261 (427)
T ss_pred             CCCcccceE-------cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-CC-----CccceEECCCCCEEEEEEccC
Confidence            455666666       7799998877643   3599999988875443222 11     4568899999998874 44 7


Q ss_pred             CcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeec-CCeEEEEEC--CCCCceEeeccCCCCeEEEEE
Q psy2305         133 SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY-SKIIGLFSD--SDGRPLFFLKGHNGGITHLEF  209 (334)
Q Consensus       133 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~i~~~~~  209 (334)
                      +...+|.++..+....    .+..+........|+|||+ .|+..+. +|...+|.+  .+++. ..+..........+|
T Consensus       262 g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~wSpDG~-~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~  335 (427)
T PRK02889        262 GNSQIYTVNADGSGLR----RLTQSSGIDTEPFFSPDGR-SIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRI  335 (427)
T ss_pred             CCceEEEEECCCCCcE----ECCCCCCCCcCeEEcCCCC-EEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEE
Confidence            7777776654333333    2344455566789999999 6665543 455555554  44443 223222333456889


Q ss_pred             ccCCcEEEeeecCCC---eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC---cEEEEeCCCCCCCC
Q psy2305         210 SSNGILLFSGARKDC---EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG---DLSIWNVNTSNLPS  283 (334)
Q Consensus       210 ~~~~~~l~~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~  283 (334)
                      +|+|++|+..+ .++   .|.+||+.. +.. ..+...   .......|+|||++|+..+.++   .+.+.++..     
T Consensus       336 SpDG~~Ia~~s-~~~g~~~I~v~d~~~-g~~-~~lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-----  404 (427)
T PRK02889        336 SPDGKLLAYIS-RVGGAFKLYVQDLAT-GQV-TALTDT---TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-----  404 (427)
T ss_pred             CCCCCEEEEEE-ccCCcEEEEEEECCC-CCe-EEccCC---CCccCceECCCCCEEEEEEecCCCEEEEEEECCC-----
Confidence            99999998877 443   699999986 432 333322   1224568999999988776543   355556643     


Q ss_pred             CCCccccccccceecccccccceeeeccCCC
Q psy2305         284 SPYEESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                              .....+..+.+.+...+|  +|-
T Consensus       405 --------~~~~~l~~~~g~~~~p~w--sp~  425 (427)
T PRK02889        405 --------RIKQRLSVQGGDVREPSW--GPF  425 (427)
T ss_pred             --------CceEEeecCCCCCCCCcc--CCC
Confidence                    344455556677888899  874

>KOG2394|consensus

Probab=99.78  E-value=3.5e-17  Score=134.50  Aligned_cols=202  Identities=10%  Similarity=0.184  Sum_probs=146.1

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCC------
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGR------  145 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~------  145 (334)
                      .+.+--++.+-.-|.|.+.|....+..+.+....+.+. ..|+++.|-|.+..++ ++. +|.+.+||......      
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~k-tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~  260 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINK-SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY  260 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccc-cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence            45566688888889999998766333333332222222 3899999999765444 444 99999997642100      


Q ss_pred             -------eeee---------ecc-cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEE
Q psy2305         146 -------ECVS---------RNL-KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE  208 (334)
Q Consensus       146 -------~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  208 (334)
                             ....         -++ .+..-++.|+.++|+|||+ +||+.+.||.++|||..+.+++..++..-+...|++
T Consensus       261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvc  339 (636)
T KOG2394|consen  261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVC  339 (636)
T ss_pred             cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEE
Confidence                   0000         000 1122345788999999999 999999999999999999988888888888999999


Q ss_pred             EccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecC-------------------------------
Q psy2305         209 FSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTS-------------------------------  257 (334)
Q Consensus       209 ~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~-------------------------------  257 (334)
                      |||||++|++|+ +|.-+.||.+.. .+.+..-.+|  ..+|..++|.|                               
T Consensus       340 WSPDGKyIvtGG-EDDLVtVwSf~e-rRVVARGqGH--kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~  415 (636)
T KOG2394|consen  340 WSPDGKYIVTGG-EDDLVTVWSFEE-RRVVARGQGH--KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANG  415 (636)
T ss_pred             EcCCccEEEecC-CcceEEEEEecc-ceEEEecccc--ccceeeEeecccccccccccccccccccccchhcccccccCC
Confidence            999999999999 999999999987 6666655555  66777777763                               


Q ss_pred             C----C-------------ceEEeeecCCcEEEEeCCCCCC
Q psy2305         258 C----S-------------NYLLSGNTNGDLSIWNVNTSNL  281 (334)
Q Consensus       258 ~----~-------------~~l~~~~~dg~i~iwd~~~~~~  281 (334)
                      +    +             -.+.+.+.|.++.+||+....+
T Consensus       416 ~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  416 TGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             CCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence            0    1             1466788999999999987543

>KOG2321|consensus

Probab=99.77  E-value=2.1e-16  Score=131.04  Aligned_cols=270  Identities=17%  Similarity=0.175  Sum_probs=189.3

Q ss_pred             ceeEEEEcCCCcEE-EEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGTCL-LTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l-~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +-+.|..+|||+|+ |+|.....|++||+....+.                +..|-...+..+.  |    ++.|-..++
T Consensus        53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK----------------FERhlDae~V~fe--i----LsDD~SK~v  110 (703)
T KOG2321|consen   53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK----------------FERHLDAEVVDFE--I----LSDDYSKSV  110 (703)
T ss_pred             ccceeEecCCCcEEEEecccCCceEEEEcccceee----------------eeecccccceeEE--E----eccchhhhe
Confidence            34678999999976 67778999999999876653                3334333332221  1    233433344


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC-EEEEeeCCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      .-..|.+|.+..- -|... .+....      .-..|+++.-.. ++++|+...|.-++++. |+-+.    .+......
T Consensus       111 ~L~~DR~IefHak-~G~hy-~~RIP~------~GRDm~y~~~scDly~~gsg~evYRlNLEq-GrfL~----P~~~~~~~  177 (703)
T KOG2321|consen  111 FLQNDRTIEFHAK-YGRHY-RTRIPK------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ-GRFLN----PFETDSGE  177 (703)
T ss_pred             EeecCceeeehhh-cCeee-eeecCc------CCccccccCCCccEEEeecCcceEEEEccc-ccccc----cccccccc
Confidence            4455777766542 23221 111111      335677765444 44455677899999987 66665    45556688


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec------cCCC-----CeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK------GHNG-----GITHLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~-----~i~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                      ++++..++-.. +|++|+.+|.|..||.++...+.++.      .|.+     .|+++.|+.+|-.+++|+ .+|.+.||
T Consensus       178 lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt-s~G~v~iy  255 (703)
T KOG2321|consen  178 LNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT-STGSVLIY  255 (703)
T ss_pred             ceeeeecCccc-eEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec-cCCcEEEE
Confidence            99999999998 99999999999999999877666653      2333     499999999999999999 89999999


Q ss_pred             EccCCCccceeecccccCCceEEEEecCC--CceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccccccee
Q psy2305         230 DLRNPGCILHTFPRQVSTNQRVYFDLTSC--SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV  307 (334)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  307 (334)
                      |++. .+++ ....|....++..+.|-+.  +..+++. ....++|||-.++            +....+.. ...++.+
T Consensus       256 DLRa-~~pl-~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G------------k~~asiEp-t~~lND~  319 (703)
T KOG2321|consen  256 DLRA-SKPL-LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG------------KPMASIEP-TSDLNDF  319 (703)
T ss_pred             Eccc-CCce-eecccCCccceeeecccccCCCceEEec-chHHhhhcccccC------------Cceeeccc-cCCcCce
Confidence            9997 4543 3455666778888999775  4556554 3467999999998            55555554 3459999


Q ss_pred             eeccCCCcccceeeEEeeecceee
Q psy2305         308 RWKHHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       308 ~~~~s~~~~~~~~~l~t~~~d~~i  331 (334)
                      ++  -|++    -++++|-++..+
T Consensus       320 C~--~p~s----Gm~f~Ane~~~m  337 (703)
T KOG2321|consen  320 CF--VPGS----GMFFTANESSKM  337 (703)
T ss_pred             ee--ecCC----ceEEEecCCCcc
Confidence            99  9999    899988777543

>KOG0322|consensus

Probab=99.77  E-value=4.2e-17  Score=122.59  Aligned_cols=248  Identities=11%  Similarity=0.094  Sum_probs=166.5

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc--EE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS--YF   80 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~--~l   80 (334)
                      .|+.+.--|+ ..|.+-++|+.+.+|++.....+                  ..|.-.++++.|++.++.-.+...  .+
T Consensus        58 ~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------------------~i~Si~~nslgFCrfSl~~~~k~~eqll  118 (323)
T KOG0322|consen   58 FITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFI------------------SIHSIVVNSLGFCRFSLVKKPKNSEQLL  118 (323)
T ss_pred             eeeceeecCC-cchhhcCCCceEEEEEccCcceE------------------EEeeeeccccccccceeccCCCcchhhe
Confidence            4566666676 46788899999999999886654                  123466778888775443333222  22


Q ss_pred             EEeeCCC-cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC-CCE--EEEee-CCcEEEEEcCCCCCeeeeecc---
Q psy2305          81 LCSSMYA-PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD-GNK--IYAGF-LSEVKIFSTDRPGRECVSRNL---  152 (334)
Q Consensus        81 ~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~--l~~~~-d~~i~i~d~~~~~~~~~~~~~---  152 (334)
                      +.-++.. .+.+-|......+.... .....+.+.+.+..+..+ +.+  |++|. +|.+.+||+.+. ..+...+.   
T Consensus       119 ~yp~rgsde~h~~D~g~~tqv~i~d-d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~-~~~~~~~~~~k  196 (323)
T KOG0322|consen  119 EYPSRGSDETHKQDGGDTTQVQIAD-DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTG-DKIIQLPQSSK  196 (323)
T ss_pred             ecCCcccchhhhhccCccceeEccC-chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCC-ceeeccccccc
Confidence            3222211 12223322222222221 122222336677765443 333  33666 899999999973 22221111   


Q ss_pred             ---cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC--Cc--eEeeccCCCCeEEEEEccCCcEEEeeecCCCe
Q psy2305         153 ---KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG--RP--LFFLKGHNGGITHLEFSSNGILLFSGARKDCE  225 (334)
Q Consensus       153 ---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~  225 (334)
                         ....|+.+|.++.+.+... .=++|+.+..+..|.+...  .+  -..+.-.+-.|..+..-||++.+++++ .|+.
T Consensus       197 v~~~~ash~qpvlsldyas~~~-rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG-WD~R  274 (323)
T KOG0322|consen  197 VESPNASHKQPVLSLDYASSCD-RGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG-WDHR  274 (323)
T ss_pred             cccchhhccCcceeeeechhhc-CCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc-cCCc
Confidence               3567899999999987765 5567888888999988543  21  122222344688899999999999999 8999


Q ss_pred             EEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305         226 IICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       226 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  276 (334)
                      |++|..++ .+++..++.|  ...+.+++|+|+...+|+++.|++|.+|++
T Consensus       275 iRVyswrt-l~pLAVLkyH--sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  275 IRVYSWRT-LNPLAVLKYH--SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEEEecc-CCchhhhhhh--hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999998 8889999888  578899999999999999999999999986

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.77  E-value=3.6e-15  Score=125.07  Aligned_cols=254  Identities=15%  Similarity=0.227  Sum_probs=161.8

Q ss_pred             eeEEEEcCCCcEEEEeeC----CCeEEEEECCCC--CceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           4 EEDVDEAPDGTCLLTNSN----DNHLRTFDLPSE--LHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~----d~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      ...++++|++++|++...    ++.|..|++...  .+.            ....... .+..       |..++++|++
T Consensus        39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~------------~~~~~~~-~g~~-------p~~i~~~~~g   98 (345)
T PF10282_consen   39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT------------LLNSVPS-GGSS-------PCHIAVDPDG   98 (345)
T ss_dssp             ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE------------EEEEEEE-SSSC-------EEEEEECTTS
T ss_pred             CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE------------Eeeeecc-CCCC-------cEEEEEecCC
Confidence            456889999999988865    578999988764  322            0011110 1111       2235668999


Q ss_pred             cEEEEeeC-CCcEEEEeCCC-CeeeEEEcCcc--------ccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCC
Q psy2305          78 SYFLCSSM-YAPIHLWDSVG-GEIKATYRPYN--------QVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGR  145 (334)
Q Consensus        78 ~~l~~~~~-d~~i~iwd~~~-~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~  145 (334)
                      ++|+++.. +|.|.++++.. |..........        .......++++.|+|+++++++..  ...|.+|+++....
T Consensus        99 ~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~  178 (345)
T PF10282_consen   99 RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG  178 (345)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-
T ss_pred             CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCc
Confidence            99988874 78999999976 44433211110        011122678999999999998775  67899999986432


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC--CCC--ceEeecc----C--CCCeEEEEEccCCcE
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS--DGR--PLFFLKG----H--NGGITHLEFSSNGIL  215 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~--~~~~~~~----~--~~~i~~~~~~~~~~~  215 (334)
                      .+..............+.++|+|+++...++...++.|.+|++.  +++  .+..+..    .  ......++++|||++
T Consensus       179 ~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~  258 (345)
T PF10282_consen  179 KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRF  258 (345)
T ss_dssp             TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSE
T ss_pred             eEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCE
Confidence            23221101223345678999999999444556678899999997  332  2222211    1  125788999999999


Q ss_pred             EEeeecCCCeEEEEEccCCCccceeecc-cccCCceEEEEecCCCceEEeeec-CCcEEEEeCC
Q psy2305         216 LFSGARKDCEIICWDLRNPGCILHTFPR-QVSTNQRVYFDLTSCSNYLLSGNT-NGDLSIWNVN  277 (334)
Q Consensus       216 l~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~  277 (334)
                      |+++.+..+.|.+|+++.....+..+.. .........++++|+|++|+++.. ++.|.+|++.
T Consensus       259 lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  259 LYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            9999888899999999542222333322 122455788999999999998875 5789999764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.77  E-value=3.5e-15  Score=124.96  Aligned_cols=267  Identities=11%  Similarity=0.072  Sum_probs=163.5

Q ss_pred             cEE-EEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305          14 TCL-LTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW   92 (334)
Q Consensus        14 ~~l-~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw   92 (334)
                      +++ ++-..++.|.+.|..+.+..              ..+..+. ..-..       +.++|||++++++++||.|.++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~--------------~~i~~~~-~~h~~-------~~~s~Dgr~~yv~~rdg~vsvi   63 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVV--------------ARIPTGG-APHAG-------LKFSPDGRYLYVANRDGTVSVI   63 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEE--------------EEEE-ST-TEEEE-------EE-TT-SSEEEEEETTSEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEE--------------EEEcCCC-CceeE-------EEecCCCCEEEEEcCCCeEEEE
Confidence            344 45557899999999998876              3444322 11122       3358899999999999999999


Q ss_pred             eCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeeccc---ccccccceEEEEEc
Q psy2305          93 DSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLK---PWFRKNIVSAIAIN  167 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~v~~~~~~  167 (334)
                      |+.+++.+.+++...      ...++++++||++++++.  .+.+.++|.++ .+.+...+..   .......+.++..+
T Consensus        64 D~~~~~~v~~i~~G~------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s  136 (369)
T PF02239_consen   64 DLATGKVVATIKVGG------NPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPTGGMPVDGPESRVAAIVAS  136 (369)
T ss_dssp             ETTSSSEEEEEE-SS------EEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-
T ss_pred             ECCcccEEEEEecCC------CcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeecccccccccccCCCceeEEec
Confidence            999999999887644      568999999999999775  89999999987 5555543221   11134567888888


Q ss_pred             CCCCcEEEEeecCCeEEEEECCCCCceE-eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeec----
Q psy2305         168 PVHPDICALGTYSKIIGLFSDSDGRPLF-FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP----  242 (334)
Q Consensus       168 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~----  242 (334)
                      |..+.+++.--+.+.|.+.|....+.+. .............|+|++++++++...++.|-++|..+ ++....+.    
T Consensus       137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~-~k~v~~i~~g~~  215 (369)
T PF02239_consen  137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT-GKLVALIDTGKK  215 (369)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT-TEEEEEEE-SSS
T ss_pred             CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeecc-ceEEEEeecccc
Confidence            9888344444455899999987665432 22224456778999999998877654677888888765 32211110    


Q ss_pred             ---------ccc---------------------------------------cCCceEEEEecCCCceEEee----ecCCc
Q psy2305         243 ---------RQV---------------------------------------STNQRVYFDLTSCSNYLLSG----NTNGD  270 (334)
Q Consensus       243 ---------~~~---------------------------------------~~~~~~~~~~s~~~~~l~~~----~~dg~  270 (334)
                               .|.                                       ......-+..+|+++++.+.    ...++
T Consensus       216 p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~  295 (369)
T PF02239_consen  216 PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADT  295 (369)
T ss_dssp             BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-
T ss_pred             ccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCce
Confidence                     000                                       00111234568999999887    44589


Q ss_pred             EEEEeCCCCCCCCCCCccccccccceecccc-cccceeeeccCCCcccceeeEEeeecc
Q psy2305         271 LSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ-DCTNGVRWKHHKFERDLLVADATCSGQ  328 (334)
Q Consensus       271 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~s~~~~~~~~~l~t~~~d  328 (334)
                      |.++|.++.            +....+.... ..+..+.|  +++|    +.+..+..+
T Consensus       296 v~viD~~tl------------~~~~~i~~~~~~~~~h~ef--~~dG----~~v~vS~~~  336 (369)
T PF02239_consen  296 VQVIDKKTL------------KVVKTITPGPGKRVVHMEF--NPDG----KEVWVSVWD  336 (369)
T ss_dssp             EEEEECCGT------------EEEE-HHHHHT--EEEEEE---TTS----SEEEEEEE-
T ss_pred             EEEEECcCc------------ceeEEEeccCCCcEeccEE--CCCC----CEEEEEEec
Confidence            999999986            4445544322 24889999  9999    765555443

...

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=3.8e-16  Score=135.12  Aligned_cols=234  Identities=13%  Similarity=0.064  Sum_probs=151.1

Q ss_pred             CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC---CcEEEEeCCCCee
Q psy2305          23 NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY---APIHLWDSVGGEI   99 (334)
Q Consensus        23 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~   99 (334)
                      ..|.+||.......               .+.. +...+....|       +|||+.|+..+.+   ..|.+||+.+++.
T Consensus       184 ~~l~i~D~~g~~~~---------------~lt~-~~~~v~~p~w-------SpDg~~la~~s~~~~~~~l~~~dl~~g~~  240 (433)
T PRK04922        184 YALQVADSDGYNPQ---------------TILR-SAEPILSPAW-------SPDGKKLAYVSFERGRSAIYVQDLATGQR  240 (433)
T ss_pred             EEEEEECCCCCCce---------------Eeec-CCCccccccC-------CCCCCEEEEEecCCCCcEEEEEECCCCCE
Confidence            46888998655432               2332 2345666555       7899998887643   4699999988765


Q ss_pred             eEEEcCccccccccceeEEEEcCCCCEEEE-ee-CC--cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEE
Q psy2305         100 KATYRPYNQVDEVTHAYSLAFSLDGNKIYA-GF-LS--EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICA  175 (334)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  175 (334)
                      ... .....     .....+|+|||+.|+. .+ ++  .|.+||+.+ +. ..    .+..+......++|+|+|+ .|+
T Consensus       241 ~~l-~~~~g-----~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~-g~-~~----~lt~~~~~~~~~~~spDG~-~l~  307 (433)
T PRK04922        241 ELV-ASFRG-----INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGS-RQ-LT----RLTNHFGIDTEPTWAPDGK-SIY  307 (433)
T ss_pred             EEe-ccCCC-----CccCceECCCCCEEEEEEeCCCCceEEEEECCC-CC-eE----ECccCCCCccceEECCCCC-EEE
Confidence            432 22121     3457899999998874 33 44  688899875 33 33    2344445556789999999 776


Q ss_pred             Eee-cCCe--EEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC--eEEEEEccCCCccceeecccccCCce
Q psy2305         176 LGT-YSKI--IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC--EIICWDLRNPGCILHTFPRQVSTNQR  250 (334)
Q Consensus       176 ~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~  250 (334)
                      ..+ .+|.  |+++|+.+++.. .+..+......++|+|+|++|+..+..++  .|.+||+.+ +.. ..+...   ...
T Consensus       308 f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~-~~Lt~~---~~~  381 (433)
T PRK04922        308 FTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSV-RTLTPG---SLD  381 (433)
T ss_pred             EEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCe-EECCCC---CCC
Confidence            655 3444  777777666543 33323334557899999999988762222  689999876 443 333321   123


Q ss_pred             EEEEecCCCceEEeeecC---CcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCC
Q psy2305         251 VYFDLTSCSNYLLSGNTN---GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHK  313 (334)
Q Consensus       251 ~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~  313 (334)
                      ....|+|||++++..+.+   +.|.++++...             ....+..+.+.+...+|  +|
T Consensus       382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-------------~~~~l~~~~g~~~~p~w--sp  432 (433)
T PRK04922        382 ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-------------VRQRLVSADGEVREPAW--SP  432 (433)
T ss_pred             CCceECCCCCEEEEEEecCCceEEEEEECCCC-------------ceEEcccCCCCCCCCcc--CC
Confidence            346799999988876653   46788888653             34445555567788889  77

>KOG2139|consensus

Probab=99.77  E-value=1.2e-15  Score=119.90  Aligned_cols=253  Identities=13%  Similarity=0.093  Sum_probs=160.0

Q ss_pred             ceeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      -|+|++|-|. ++-|+.|+..| |.+|.............  -........++......|+++.|       .+||..++
T Consensus       142 nvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~--~~s~~~~qvl~~pgh~pVtsmqw-------n~dgt~l~  211 (445)
T KOG2139|consen  142 NVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIR--MMSTHHLQVLQDPGHNPVTSMQW-------NEDGTILV  211 (445)
T ss_pred             ceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccc--cccccchhheeCCCCceeeEEEE-------cCCCCEEe
Confidence            4899999995 55788888766 99998765433210000  00001112333333468888888       56899999


Q ss_pred             EeeC-CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSM-YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +++. |..|.|||+.++..+........     .+.-+.|||||.+|+++. |+..++|+... .....    ...-..+
T Consensus       212 tAS~gsssi~iWdpdtg~~~pL~~~glg-----g~slLkwSPdgd~lfaAt~davfrlw~e~q-~wt~e----rw~lgsg  281 (445)
T KOG2139|consen  212 TASFGSSSIMIWDPDTGQKIPLIPKGLG-----GFSLLKWSPDGDVLFAATCDAVFRLWQENQ-SWTKE----RWILGSG  281 (445)
T ss_pred             ecccCcceEEEEcCCCCCcccccccCCC-----ceeeEEEcCCCCEEEEecccceeeeehhcc-cceec----ceeccCC
Confidence            9875 56899999999887665422112     788999999999999887 99999997664 22222    1222345


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCC--CC-----------ceEee------cc---CCCCeEEEEEccCCcEEE
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSD--GR-----------PLFFL------KG---HNGGITHLEFSSNGILLF  217 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~-----------~~~~~------~~---~~~~i~~~~~~~~~~~l~  217 (334)
                      .|....|+|.|+.+|++.+..-.++-.....  +.           ++..+      .+   -.+++.+++|.|.|.+|+
T Consensus       282 rvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLa  361 (445)
T KOG2139|consen  282 RVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLA  361 (445)
T ss_pred             ceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEE
Confidence            8999999999995555554444333222211  10           01111      11   146788999999999999


Q ss_pred             eeecCCC--------eEEEEEccCCCccceeec--ccccCCceEEEEecC---CCceEEeeecCCcEEEEeCCC
Q psy2305         218 SGARKDC--------EIICWDLRNPGCILHTFP--RQVSTNQRVYFDLTS---CSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       218 ~~~~~d~--------~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~s~---~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      +.- ..+        .|.+||.+. . +...+.  +.........+.|+|   ++.+|..+-..|.+.-|++.-
T Consensus       362 v~f-Kg~~~v~~~k~~i~~fdtr~-s-p~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f  432 (445)
T KOG2139|consen  362 VIF-KGQSFVLLCKLHISRFDTRK-S-PPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF  432 (445)
T ss_pred             EEE-cCCchhhhhhhhhhhhcccc-c-CceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence            876 443        377788875 2 222222  222222233455555   677888888889888887654

>KOG2394|consensus

Probab=99.76  E-value=6.2e-17  Score=133.05  Aligned_cols=173  Identities=16%  Similarity=0.229  Sum_probs=130.9

Q ss_pred             cCCCCEEEEee-CCcEEEEEcCCCCCeeee-ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-------
Q psy2305         121 SLDGNKIYAGF-LSEVKIFSTDRPGRECVS-RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-------  191 (334)
Q Consensus       121 ~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------  191 (334)
                      .|.+--|+.|. -|.+.+.|...  ..... ......-.+..|+|+.|-|.++..++.+..+|.+++||....       
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~--~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~  259 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPIN--FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS  259 (636)
T ss_pred             CCCCcceEEeeccCceEEecchh--hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence            34566677776 78999888764  22111 000112235789999999998878888999999999976311       


Q ss_pred             ---------------------CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCce
Q psy2305         192 ---------------------RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR  250 (334)
Q Consensus       192 ---------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  250 (334)
                                           .++..+.--.+.|..++|+|||++|++.+ .||.++|+|+.+ ..++..++..  -+..
T Consensus       260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS-qDGfLRvF~fdt-~eLlg~mkSY--FGGL  335 (636)
T KOG2394|consen  260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVS-QDGFLRIFDFDT-QELLGVMKSY--FGGL  335 (636)
T ss_pred             ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEe-cCceEEEeeccH-HHHHHHHHhh--ccce
Confidence                                 11111222245788999999999999999 899999999987 5544444332  4567


Q ss_pred             EEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCC
Q psy2305         251 VYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHK  313 (334)
Q Consensus       251 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~  313 (334)
                      ++++|||||+|+++|++|.-|.||.+...            +.+..-.+|..+|..|+|  .|
T Consensus       336 LCvcWSPDGKyIvtGGEDDLVtVwSf~er------------RVVARGqGHkSWVs~VaF--Dp  384 (636)
T KOG2394|consen  336 LCVCWSPDGKYIVTGGEDDLVTVWSFEER------------RVVARGQGHKSWVSVVAF--DP  384 (636)
T ss_pred             EEEEEcCCccEEEecCCcceEEEEEeccc------------eEEEeccccccceeeEee--cc
Confidence            89999999999999999999999999998            788888999999999999  64

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.76  E-value=7.7e-15  Score=122.91  Aligned_cols=245  Identities=11%  Similarity=0.128  Sum_probs=152.4

Q ss_pred             eEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee
Q psy2305           5 EDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS   84 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~   84 (334)
                      ..+.|+|||+++++++.||.|.++|+.+.+..              ..+..+  ....       .+++|+||++++++.
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v--------------~~i~~G--~~~~-------~i~~s~DG~~~~v~n   96 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVV--------------ATIKVG--GNPR-------GIAVSPDGKYVYVAN   96 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEE--------------EEEE-S--SEEE-------EEEE--TTTEEEEEE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEE--------------EEEecC--CCcc-------eEEEcCCCCEEEEEe
Confidence            34679999999999999999999999999876              344332  2223       355588999988775


Q ss_pred             -CCCcEEEEeCCCCeeeEEEcCccccc--cccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          85 -MYAPIHLWDSVGGEIKATYRPYNQVD--EVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        85 -~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                       .++.+.++|.++.+.++.+.......  ...++..+..+|....++..-  .+.|.+.|.... ..+..   .......
T Consensus        97 ~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-~~~~~---~~i~~g~  172 (369)
T PF02239_consen   97 YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-KNLKV---TTIKVGR  172 (369)
T ss_dssp             EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-SCEEE---EEEE--T
T ss_pred             cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-cccce---eeecccc
Confidence             57899999999999988876533211  122677888899888666553  488888887753 33322   2333445


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-----------------------------------------
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-----------------------------------------  198 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------------------------------  198 (334)
                      ......|+|+++++++....+..|-++|.++++.+..+.                                         
T Consensus       173 ~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~  252 (369)
T PF02239_consen  173 FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVS  252 (369)
T ss_dssp             TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT
T ss_pred             cccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccc
Confidence            677899999999444445667788888887765443221                                         


Q ss_pred             --------------cCCCCeEEEEEccCCcEEEee---ecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCce
Q psy2305         199 --------------GHNGGITHLEFSSNGILLFSG---ARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNY  261 (334)
Q Consensus       199 --------------~~~~~i~~~~~~~~~~~l~~~---~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  261 (334)
                                    ...++ .-+..+|+++++++.   +...++|.++|.++ .+....+... ....+..+.|+++|++
T Consensus       253 v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t-l~~~~~i~~~-~~~~~~h~ef~~dG~~  329 (369)
T PF02239_consen  253 VHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT-LKVVKTITPG-PGKRVVHMEFNPDGKE  329 (369)
T ss_dssp             -STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG-TEEEE-HHHH-HT--EEEEEE-TTSSE
T ss_pred             cchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC-cceeEEEecc-CCCcEeccEECCCCCE
Confidence                          00111 335668999999988   32568999999997 4444444422 2334888999999998


Q ss_pred             EEeeecC--CcEEEEeCCCC
Q psy2305         262 LLSGNTN--GDLSIWNVNTS  279 (334)
Q Consensus       262 l~~~~~d--g~i~iwd~~~~  279 (334)
                      +..+..+  +.|.+||..+.
T Consensus       330 v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  330 VWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             EEEEEE--TTEEEEEETTTT
T ss_pred             EEEEEecCCCEEEEEECCCc
Confidence            7665443  37999999997

...

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.75  E-value=4.1e-14  Score=118.68  Aligned_cols=244  Identities=11%  Similarity=0.105  Sum_probs=156.5

Q ss_pred             ecccceecCCCcEEEEeeC----CCcEEEEeCCC--Ceee--EEEcCccccccccceeEEEEcCCCCEEEEee--CCcEE
Q psy2305          67 YPKTSSIDGFTSYFLCSSM----YAPIHLWDSVG--GEIK--ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVK  136 (334)
Q Consensus        67 ~~~~~~~s~~~~~l~~~~~----d~~i~iwd~~~--~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~  136 (334)
                      .|..++++|++++|.+...    ++.|..|.+..  +++.  ........     ....++++|++++|+++.  +|.+.
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~-----~p~~i~~~~~g~~l~vany~~g~v~  112 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS-----SPCHIAVDPDGRFLYVANYGGGSVS  112 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS-----CEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC-----CcEEEEEecCCCEEEEEEccCCeEE
Confidence            4566788999999988866    46888887765  3332  22221112     567899999999999885  89999


Q ss_pred             EEEcCCCCCeeeeecc-cc--------cccccceEEEEEcCCCCcEEEEe-ecCCeEEEEECCCCC--ce--Eeec-cCC
Q psy2305         137 IFSTDRPGRECVSRNL-KP--------WFRKNIVSAIAINPVHPDICALG-TYSKIIGLFSDSDGR--PL--FFLK-GHN  201 (334)
Q Consensus       137 i~d~~~~~~~~~~~~~-~~--------~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~--~~~~-~~~  201 (334)
                      ++++...+........ ..        ........++.++|+++ ++++. -....|.+|++....  ..  ..+. ...
T Consensus       113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~-~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G  191 (345)
T PF10282_consen  113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR-FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG  191 (345)
T ss_dssp             EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS-EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred             EEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC-EEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence            9999975444332111 01        11234578999999999 66554 345689999997654  21  1221 234


Q ss_pred             CCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccce---eec---ccc-cCCceEEEEecCCCceEEeeec-CCcEEE
Q psy2305         202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH---TFP---RQV-STNQRVYFDLTSCSNYLLSGNT-NGDLSI  273 (334)
Q Consensus       202 ~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~---~~~---~~~-~~~~~~~~~~s~~~~~l~~~~~-dg~i~i  273 (334)
                      ...+.+.|+|+++++++....++.|.++++......+.   .+.   ... .......+.++|||++|+++.. .+.|.+
T Consensus       192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v  271 (345)
T PF10282_consen  192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV  271 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred             CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence            56789999999999988876789999999983121111   111   111 1125667899999999887654 678999


Q ss_pred             EeCCC--CCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeec-ceeee
Q psy2305         274 WNVNT--SNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG-QITNV  332 (334)
Q Consensus       274 wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~-d~~i~  332 (334)
                      |++..  +.+          +.+..+.......+.+++  +|++    ++|+++.. ++.|.
T Consensus       272 f~~d~~~g~l----------~~~~~~~~~G~~Pr~~~~--s~~g----~~l~Va~~~s~~v~  317 (345)
T PF10282_consen  272 FDLDPATGTL----------TLVQTVPTGGKFPRHFAF--SPDG----RYLYVANQDSNTVS  317 (345)
T ss_dssp             EEECTTTTTE----------EEEEEEEESSSSEEEEEE---TTS----SEEEEEETTTTEEE
T ss_pred             EEEecCCCce----------EEEEEEeCCCCCccEEEE--eCCC----CEEEEEecCCCeEE
Confidence            99943  221          344444433445799999  9999    88887764 44443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=7.5e-16  Score=132.75  Aligned_cols=214  Identities=10%  Similarity=0.007  Sum_probs=137.3

Q ss_pred             ceeEEEEcCCCcEEEEee---CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           3 IEEDVDEAPDGTCLLTNS---NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~---~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      .+.+.+|||||+.|+..+   .+..|.+|++.+++..               .+.. ..+.+....|       +|||+.
T Consensus       200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---------------~l~~-~~~~~~~~~~-------SPDG~~  256 (429)
T PRK03629        200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------------QVAS-FPRHNGAPAF-------SPDGSK  256 (429)
T ss_pred             ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---------------EccC-CCCCcCCeEE-------CCCCCE
Confidence            578899999999988754   3457999999887643               1111 1122223444       889998


Q ss_pred             EEEe-eCCC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccc
Q psy2305          80 FLCS-SMYA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        80 l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      |+.. +.+|  .|.+||+++++....... ..     .+....|+|||+.|+..+  ++...+|.++..+.....    +
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~-----~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~----l  326 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVTDG-RS-----NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR----I  326 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEccCC-CC-----CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE----e
Confidence            8765 4444  588999988766543322 21     567899999999888655  455556644332333332    2


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecC---CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCe---EEE
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYS---KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCE---IIC  228 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~---i~i  228 (334)
                      ...........|+|+|+ .|+..+.+   ..|.+||+.+++.. .+... .......|+|||++|+.++ .++.   +.+
T Consensus       327 t~~~~~~~~~~~SpDG~-~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s-~~~~~~~l~~  402 (429)
T PRK03629        327 TWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSS-SQGMGSVLNL  402 (429)
T ss_pred             ecCCCCccCEEECCCCC-EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEE-cCCCceEEEE
Confidence            22334456789999999 77665433   35889999877643 34322 2234688999999999988 6654   666


Q ss_pred             EEccCCCccceeecccccCCceEEEEecC
Q psy2305         229 WDLRNPGCILHTFPRQVSTNQRVYFDLTS  257 (334)
Q Consensus       229 wd~~~~~~~~~~~~~~~~~~~~~~~~~s~  257 (334)
                      +++.  +.....+..+  ...+...+|+|
T Consensus       403 ~~~~--G~~~~~l~~~--~~~~~~p~Wsp  427 (429)
T PRK03629        403 VSTD--GRFKARLPAT--DGQVKFPAWSP  427 (429)
T ss_pred             EECC--CCCeEECccC--CCCcCCcccCC
Confidence            7765  5555556543  34455567776

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=3.8e-15  Score=129.09  Aligned_cols=234  Identities=10%  Similarity=0.025  Sum_probs=151.7

Q ss_pred             CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC---CCcEEEEeCCCCee
Q psy2305          23 NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM---YAPIHLWDSVGGEI   99 (334)
Q Consensus        23 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~---d~~i~iwd~~~~~~   99 (334)
                      ..|.++|.+.....               .+. .+...+...+|       +|||+.|+..+.   +..|.+||+.+++.
T Consensus       182 ~~l~~~d~dg~~~~---------------~lt-~~~~~v~~p~w-------SpDG~~lay~s~~~g~~~i~~~dl~~g~~  238 (435)
T PRK05137        182 KRLAIMDQDGANVR---------------YLT-DGSSLVLTPRF-------SPNRQEITYMSYANGRPRVYLLDLETGQR  238 (435)
T ss_pred             eEEEEECCCCCCcE---------------EEe-cCCCCeEeeEE-------CCCCCEEEEEEecCCCCEEEEEECCCCcE
Confidence            37888888665542               233 24456777777       779998888753   45899999988765


Q ss_pred             eEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCc--EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEE
Q psy2305         100 KATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSE--VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICA  175 (334)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  175 (334)
                      .. +.....     .+...+|+|||+.|+ +.+ ++.  |.+||+..  ....    .+..+........|+|+|+ .|+
T Consensus       239 ~~-l~~~~g-----~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--~~~~----~Lt~~~~~~~~~~~spDG~-~i~  305 (435)
T PRK05137        239 EL-VGNFPG-----MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS--GTTT----RLTDSPAIDTSPSYSPDGS-QIV  305 (435)
T ss_pred             EE-eecCCC-----cccCcEECCCCCEEEEEEecCCCceEEEEECCC--CceE----EccCCCCccCceeEcCCCC-EEE
Confidence            43 332222     567889999999887 434 554  66667764  3333    2444555667899999999 777


Q ss_pred             Eeec-CC--eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC--CeEEEEEccCCCccceeecccccCCce
Q psy2305         176 LGTY-SK--IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD--CEIICWDLRNPGCILHTFPRQVSTNQR  250 (334)
Q Consensus       176 ~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~  250 (334)
                      ..+. +|  .|+++|+..++. ..+..+.+.+....|+|+|+.|+......  ..|.+||+.. + ....+...   ...
T Consensus       306 f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~-~-~~~~lt~~---~~~  379 (435)
T PRK05137        306 FESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG-S-GERILTSG---FLV  379 (435)
T ss_pred             EEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC-C-ceEeccCC---CCC
Confidence            6553 33  688889766544 44443455667789999999998876222  3578888754 2 23333321   234


Q ss_pred             EEEEecCCCceEEeeecC------CcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCC
Q psy2305         251 VYFDLTSCSNYLLSGNTN------GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       251 ~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                      ....|+|||++|+..+.+      ..+.++|+..+.             ...+. ..+.+...+|  +|-
T Consensus       380 ~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~-------------~~~l~-~~~~~~~p~W--sp~  433 (435)
T PRK05137        380 EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN-------------EREVP-TPGDASDPAW--SPL  433 (435)
T ss_pred             CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc-------------eEEcc-CCCCccCccc--CCC
Confidence            457899999998765542      257888887652             22333 2345677888  764

>KOG0280|consensus

Probab=99.75  E-value=1.6e-15  Score=115.90  Aligned_cols=272  Identities=17%  Similarity=0.118  Sum_probs=184.3

Q ss_pred             CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-EEEEeeCCCcEEEEeCCCCeee
Q psy2305          22 DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-YFLCSSMYAPIHLWDSVGGEIK  100 (334)
Q Consensus        22 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~  100 (334)
                      .|.+.+|++...+..            ...++.......++.+.|+...    .+|. .++-+..+|.|.++........
T Consensus        45 ~Gkl~Lys~~d~~~~------------~l~~~q~~dts~~~dm~w~~~~----~~g~~~l~~a~a~G~i~~~r~~~~~ss  108 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLS------------PLDTLQCTDTSTEFDMLWRIRE----TDGDFNLLDAHARGQIQLYRNDEDESS  108 (339)
T ss_pred             ccceEEEeecccccC------------ccceeeeecccccceeeeeecc----CCccceeeeccccceEEEEeeccceee
Confidence            467888988877654            1234444455778888886532    2444 4666777899999977655555


Q ss_pred             EEEcCcccccccc-ceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee
Q psy2305         101 ATYRPYNQVDEVT-HAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT  178 (334)
Q Consensus       101 ~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  178 (334)
                      ..+++.....-.. ...++.|++.+..++++. +|.+.+-+...  ..++... ..+.|..+..-..|+...++++.+|+
T Consensus       109 ~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~--~~le~vq-~wk~He~E~Wta~f~~~~pnlvytGg  185 (339)
T KOG0280|consen  109 VHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETE--MVLEKVQ-TWKVHEFEAWTAKFSDKEPNLVYTGG  185 (339)
T ss_pred             eeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecce--eeeeecc-cccccceeeeeeecccCCCceEEecC
Confidence            5554432211100 246888999999888885 88888555442  2222211 57889999999999888777999999


Q ss_pred             cCCeEEEEECCCC-CceEe-eccCCCCeEEEEEcc-CCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEe
Q psy2305         179 YSKIIGLFSDSDG-RPLFF-LKGHNGGITHLEFSS-NGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDL  255 (334)
Q Consensus       179 ~dg~i~i~d~~~~-~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  255 (334)
                      +|+.+..||++.. +.+.. -+.|...|.++.-+| .+.++++|+ .|..|++||.|+-++++..-.   ..+.++.+.+
T Consensus       186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs-YDe~i~~~DtRnm~kPl~~~~---v~GGVWRi~~  261 (339)
T KOG0280|consen  186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS-YDECIRVLDTRNMGKPLFKAK---VGGGVWRIKH  261 (339)
T ss_pred             CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec-cccceeeeehhcccCccccCc---cccceEEEEe
Confidence            9999999999943 33332 356888899998876 577999999 899999999997677765443   3577899999


Q ss_pred             cCCC--ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeec-cee
Q psy2305         256 TSCS--NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG-QIT  330 (334)
Q Consensus       256 s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~-d~~  330 (334)
                      +|.-  +.|+++-.+| .+|-+.+.+...       -.......+.|.+-...-.|  ....    ..||||+. |+.
T Consensus       262 ~p~~~~~lL~~CMh~G-~ki~~~~~~~~e-------~~~~~~s~~~hdSl~YG~DW--d~~~----~~lATCsFYDk~  325 (339)
T KOG0280|consen  262 HPEIFHRLLAACMHNG-AKILDSSDKVLE-------FQIVLPSDKIHDSLCYGGDW--DSKD----SFLATCSFYDKK  325 (339)
T ss_pred             cchhhhHHHHHHHhcC-ceEEEecccccc-------hheeeeccccccceeecccc--cccc----ceeeeeeccccc
Confidence            9853  4555555555 778877765321       00133344566666677777  5555    57888763 444

>KOG1310|consensus

Probab=99.73  E-value=1.1e-16  Score=132.01  Aligned_cols=218  Identities=15%  Similarity=0.145  Sum_probs=153.7

Q ss_pred             eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC--CCEEE
Q psy2305          51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIY  128 (334)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~  128 (334)
                      ..+.+ |.+.|+++.|       +.+|.+|++|+.|-.+.|||....+.+..+.. +|..   .|.++.|-|.  .++++
T Consensus        44 ~eL~G-H~GCVN~LeW-------n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-gHta---NIFsvKFvP~tnnriv~  111 (758)
T KOG1310|consen   44 AELTG-HTGCVNCLEW-------NADGELLASGSDDTRLIVWDPFEYKLLHSIST-GHTA---NIFSVKFVPYTNNRIVL  111 (758)
T ss_pred             hhhcc-ccceecceee-------cCCCCEEeecCCcceEEeecchhcceeeeeec-cccc---ceeEEeeeccCCCeEEE
Confidence            45554 6688999888       77999999999999999999987777766643 2333   8999999994  45666


Q ss_pred             Eee-CCcEEEEEcCCCCC------eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc-------e
Q psy2305         129 AGF-LSEVKIFSTDRPGR------ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP-------L  194 (334)
Q Consensus       129 ~~~-d~~i~i~d~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~  194 (334)
                      +|. |..|+++|+.....      ...... .+.-|...|..++-.|++++.+.++++||+|+-||++....       .
T Consensus       112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~-~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~  190 (758)
T KOG1310|consen  112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTR-CWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP  190 (758)
T ss_pred             eccCcceEEEEecccccccccccCccchhh-hhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence            776 99999999984110      111100 35678889999999999977999999999999999986321       1


Q ss_pred             Eee---ccCCCCeEEEEEccCC-cEEEeeecCCCeEEEEEccCCCc-----------------cceeec-ccc------c
Q psy2305         195 FFL---KGHNGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGC-----------------ILHTFP-RQV------S  246 (334)
Q Consensus       195 ~~~---~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iwd~~~~~~-----------------~~~~~~-~~~------~  246 (334)
                      ..+   ...--...++..+|.. .+|++|+ .|...++||.+...+                 ++..+. +|.      .
T Consensus       191 ~~l~ny~~~lielk~ltisp~rp~~laVGg-sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~  269 (758)
T KOG1310|consen  191 SILVNYNPQLIELKCLTISPSRPYYLAVGG-SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNL  269 (758)
T ss_pred             HHHHHhchhhheeeeeeecCCCCceEEecC-CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccc
Confidence            111   1122345688999955 5788888 899999999543111                 111111 111      0


Q ss_pred             CC---ceEEEEecCCCceEEeeecCCcEEEEeCCCCCCC
Q psy2305         247 TN---QRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLP  282 (334)
Q Consensus       247 ~~---~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  282 (334)
                      ..   ....+.|+|+|..|+..-....|+++|+..++.+
T Consensus       270 ~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  270 DRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             ccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            11   1345789999988777666668999999987644

>KOG4497|consensus

Probab=99.73  E-value=4.1e-15  Score=115.55  Aligned_cols=278  Identities=15%  Similarity=0.157  Sum_probs=180.5

Q ss_pred             CCceeEEEEcCCCcEEEEe-eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           1 MDIEEDVDEAPDGTCLLTN-SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         1 ~d~V~~~~~sp~~~~l~~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      +|.|..+.|..|..+++++ ..++.|.+|++...+.-              ..+.. ....+..++|       ||||+.
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~--------------ckIde-g~agls~~~W-------SPdgrh  105 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY--------------CKIDE-GQAGLSSISW-------SPDGRH  105 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecceeE--------------EEecc-CCCcceeeeE-------CCCcce
Confidence            3567788999988776655 57889999999877654              23332 2356777788       779966


Q ss_pred             E-EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CC--cEEE-----------EEcCCC
Q psy2305          80 F-LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LS--EVKI-----------FSTDRP  143 (334)
Q Consensus        80 l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~--~i~i-----------~d~~~~  143 (334)
                      + .+..-+-.|.+|.+.+.+... ++-.++     .+..++|+|||++.+..+  |.  .+.|           +++++.
T Consensus       106 iL~tseF~lriTVWSL~t~~~~~-~~~pK~-----~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~  179 (447)
T KOG4497|consen  106 ILLTSEFDLRITVWSLNTQKGYL-LPHPKT-----NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTI  179 (447)
T ss_pred             EeeeecceeEEEEEEeccceeEE-eccccc-----CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcc
Confidence            5 556668899999998765433 222223     678899999999887553  32  1111           111110


Q ss_pred             ----------CCeeeee--cc----cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce-------------
Q psy2305         144 ----------GRECVSR--NL----KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL-------------  194 (334)
Q Consensus       144 ----------~~~~~~~--~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------  194 (334)
                                +..+...  .+    ....-.-.+..++|+|.++ ++++|+.|+.+++.+--+.++.             
T Consensus       180 DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~  258 (447)
T KOG4497|consen  180 DLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPT  258 (447)
T ss_pred             cccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCch
Confidence                      1111100  00    0112235688899999999 9999999998887643211100             


Q ss_pred             -----------------------------------------------Eeec------cCCCCeEEEEEccCCcEEEeeec
Q psy2305         195 -----------------------------------------------FFLK------GHNGGITHLEFSSNGILLFSGAR  221 (334)
Q Consensus       195 -----------------------------------------------~~~~------~~~~~i~~~~~~~~~~~l~~~~~  221 (334)
                                                                     ..++      ...-.+.-++|++|..++++-..
T Consensus       259 ~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd  338 (447)
T KOG4497|consen  259 LHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND  338 (447)
T ss_pred             hhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC
Confidence                                                           0000      11123556899999999988651


Q ss_pred             -CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccc
Q psy2305         222 -KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH  300 (334)
Q Consensus       222 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  300 (334)
                       .-+.+-+||++. .+....+.   ...++.++.|+|....|+.+.....+++|.....            ..+. ....
T Consensus       339 ~~PnalW~Wdlq~-l~l~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~------------~~V~-vP~~  401 (447)
T KOG4497|consen  339 KYPNALWLWDLQN-LKLHAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP------------RVVG-VPKK  401 (447)
T ss_pred             CCCceEEEEechh-hhhhhhhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCc------------eEEe-cCCC
Confidence             125689999986 44333332   2557888999999988888877778999988774            2332 2222


Q ss_pred             ccccceeeeccCCCcccceeeEEeeeccee
Q psy2305         301 QDCTNGVRWKHHKFERDLLVADATCSGQIT  330 (334)
Q Consensus       301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~  330 (334)
                      .-.|..+.|  ..+|    ..++.++.|.-
T Consensus       402 GF~i~~l~W--~~~g----~~i~l~~kDaf  425 (447)
T KOG4497|consen  402 GFNIQKLQW--LQPG----EFIVLCGKDAF  425 (447)
T ss_pred             CceeeeEEe--cCCC----cEEEEEcCCce
Confidence            347999999  9999    99999998853

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.73  E-value=7.8e-16  Score=117.42  Aligned_cols=151  Identities=17%  Similarity=0.314  Sum_probs=109.6

Q ss_pred             eEEEEcCCCCEEEEe-e----------CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEE--eecCCe
Q psy2305         116 YSLAFSLDGNKIYAG-F----------LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICAL--GTYSKI  182 (334)
Q Consensus       116 ~~~~~~~~~~~l~~~-~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~  182 (334)
                      ..+.|+|+|.+|++- .          -+...+|.++..+.....   ......++|.+++|+|+|+ .|++  |..++.
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~---i~l~~~~~I~~~~WsP~g~-~favi~g~~~~~   84 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVES---IELKKEGPIHDVAWSPNGN-EFAVIYGSMPAK   84 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccce---eeccCCCceEEEEECcCCC-EEEEEEccCCcc
Confidence            478899999888732 1          134667777543444432   1122345799999999999 6544  446789


Q ss_pred             EEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec--CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCc
Q psy2305         183 IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR--KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN  260 (334)
Q Consensus       183 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  260 (334)
                      |.+||++ ++.+..+.  ...+..+.|+|+|++|++++.  ..|.+.+||.+. .+.+....    ...+..++|+|+|+
T Consensus        85 v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~~----~~~~t~~~WsPdGr  156 (194)
T PF08662_consen   85 VTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTFE----HSDATDVEWSPDGR  156 (194)
T ss_pred             cEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeeccc----cCcEEEEEEcCCCC
Confidence            9999996 66666664  457789999999999998861  246799999996 55555444    23467899999999


Q ss_pred             eEEeeec------CCcEEEEeCCC
Q psy2305         261 YLLSGNT------NGDLSIWNVNT  278 (334)
Q Consensus       261 ~l~~~~~------dg~i~iwd~~~  278 (334)
                      +|+++..      |+.++||+...
T Consensus       157 ~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  157 YLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEEEEEeccceeccccEEEEEecC
Confidence            9998864      78899999875

>KOG4227|consensus

Probab=99.73  E-value=4e-16  Score=123.82  Aligned_cols=244  Identities=11%  Similarity=0.072  Sum_probs=171.1

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCC------eeeEEEcCccccccccceeEEEEcCCCCEEEE
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGG------EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA  129 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  129 (334)
                      .|.+.|+++.|       +.++++|++|+.|..+++|++...      +.+. +..+.|..   .|.|++|...++++++
T Consensus        54 ~H~GCiNAlqF-------S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~~~~~H~S---NIF~L~F~~~N~~~~S  122 (609)
T KOG4227|consen   54 EHTGCINALQF-------SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-VMEHPHRS---NIFSLEFDLENRFLYS  122 (609)
T ss_pred             hhccccceeee-------ccCCeEEeecCCcceeeeechHHHHhhcCCCCce-eccCcccc---ceEEEEEccCCeeEec
Confidence            35577777666       779999999999999999998532      2222 22333322   7999999999999999


Q ss_pred             ee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC-ceE--eeccCCCCeE
Q psy2305         130 GF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR-PLF--FLKGHNGGIT  205 (334)
Q Consensus       130 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~--~~~~~~~~i~  205 (334)
                      |. +++|.+.|+++ .+.+...  ......+.|..+..+|..+ .|++.+.++.|.+||.+... .+.  .+........
T Consensus       123 G~~~~~VI~HDiEt-~qsi~V~--~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~  198 (609)
T KOG4227|consen  123 GERWGTVIKHDIET-KQSIYVA--NENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY  198 (609)
T ss_pred             CCCcceeEeeeccc-ceeeeee--cccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence            98 99999999997 3333310  1223345899999999977 99999999999999998754 222  2233455678


Q ss_pred             EEEEccCC-cEEEeeecCCCeEEEEEccCCCccceeeccccc----CCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         206 HLEFSSNG-ILLFSGARKDCEIICWDLRNPGCILHTFPRQVS----TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       206 ~~~~~~~~-~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      .+.|+|.. .+|++.+ ..+-+-+||.+.+..++........    ...-....|+|.|..|++--....-.+||+-+..
T Consensus       199 t~~F~P~~P~Li~~~~-~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R  277 (609)
T KOG4227|consen  199 TAEFHPETPALILVNS-ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR  277 (609)
T ss_pred             eeeecCCCceeEEecc-ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence            89999965 4677777 7888999999986655544433211    1223557799999998887666666788887753


Q ss_pred             CCCCCCccccccccceec----c--cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         281 LPSSPYEESVQEPLYKFS----A--HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~----~--~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +           ++..+.    +  ....+.+++|  .-|.     -+++|+++-.+++
T Consensus       278 ~-----------~V~k~D~N~~GY~N~~T~KS~~F--~~D~-----~v~tGSD~~~i~~  318 (609)
T KOG4227|consen  278 C-----------FVLKSDHNPNGYCNIKTIKSMTF--IDDY-----TVATGSDHWGIHI  318 (609)
T ss_pred             c-----------eeEeccCCCCcceeeeeeeeeee--ecce-----eeeccCcccceEE
Confidence            2           222222    1  1125778888  5554     4899999877664

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.5e-15  Score=131.09  Aligned_cols=207  Identities=15%  Similarity=0.043  Sum_probs=133.2

Q ss_pred             CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--C--CcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--L--SEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      ..|.++|.. +...+.+.....     .+.+.+|+|||+.|+..+  +  ..|.+||+.+ +....     +........
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~-----~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~~~-----l~~~~g~~~  243 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPE-----PIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRRRV-----VANFKGSNS  243 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCC-----CcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCEEE-----eecCCCCcc
Confidence            357777763 444344433222     688999999999988654  2  4599999986 43322     222334566


Q ss_pred             EEEEcCCCCcEEE-EeecCCeEEEEE--CCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccce
Q psy2305         163 AIAINPVHPDICA-LGTYSKIIGLFS--DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       163 ~~~~~~~~~~~l~-~~~~dg~i~i~d--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                      ..+|+|||+ .|+ +.+.+|...+|.  +..+. ...+..+.+......|+|||+.|+..+..++...+|.+...+....
T Consensus       244 ~~~~SPDG~-~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~  321 (427)
T PRK02889        244 APAWSPDGR-TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ  321 (427)
T ss_pred             ceEECCCCC-EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE
Confidence            899999999 555 566777655554  44443 5556556656677899999998887662356667776653232233


Q ss_pred             eecccccCCceEEEEecCCCceEEeeecCC---cEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305         240 TFPRQVSTNQRVYFDLTSCSNYLLSGNTNG---DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER  316 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~  316 (334)
                      .+...  .......+|+|+|++|+..+.++   .|.+||+.+++            . ..+... .......|  +||+ 
T Consensus       322 ~lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~------------~-~~lt~~-~~~~~p~~--spdg-  382 (427)
T PRK02889        322 RVTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ------------V-TALTDT-TRDESPSF--APNG-  382 (427)
T ss_pred             EEecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC------------e-EEccCC-CCccCceE--CCCC-
Confidence            33221  22233467999999998776554   69999998863            2 222222 23467899  9999 


Q ss_pred             cceeeEEeeecce
Q psy2305         317 DLLVADATCSGQI  329 (334)
Q Consensus       317 ~~~~~l~t~~~d~  329 (334)
                         ++|+.++.++
T Consensus       383 ---~~l~~~~~~~  392 (427)
T PRK02889        383 ---RYILYATQQG  392 (427)
T ss_pred             ---CEEEEEEecC
Confidence               8888777554

>KOG2111|consensus

Probab=99.73  E-value=2.9e-14  Score=110.33  Aligned_cols=177  Identities=15%  Similarity=0.102  Sum_probs=130.5

Q ss_pred             CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCC-CCeeeE
Q psy2305          23 NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSV-GGEIKA  101 (334)
Q Consensus        23 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~  101 (334)
                      +.|.|||-.....                ..+.....+|.++..         ....|++.- ++.|.||... ..+.+.
T Consensus        75 NkviIWDD~k~~~----------------i~el~f~~~I~~V~l---------~r~riVvvl-~~~I~VytF~~n~k~l~  128 (346)
T KOG2111|consen   75 NKVIIWDDLKERC----------------IIELSFNSEIKAVKL---------RRDRIVVVL-ENKIYVYTFPDNPKLLH  128 (346)
T ss_pred             ceEEEEecccCcE----------------EEEEEeccceeeEEE---------cCCeEEEEe-cCeEEEEEcCCChhhee
Confidence            5899999444433                333345577888777         344566654 6689999987 445566


Q ss_pred             EEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeec
Q psy2305         102 TYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY  179 (334)
Q Consensus       102 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  179 (334)
                      .+.......   ...+++-+.+..+|+.-+  -|+|+|-|+.........   ....|...|.|++.+.+|. ++|+++.
T Consensus       129 ~~et~~NPk---GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~---~I~AH~s~Iacv~Ln~~Gt-~vATaSt  201 (346)
T KOG2111|consen  129 VIETRSNPK---GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPS---IINAHDSDIACVALNLQGT-LVATAST  201 (346)
T ss_pred             eeecccCCC---ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCce---EEEcccCceeEEEEcCCcc-EEEEecc
Confidence            555432211   455554444455666433  699999999863221111   5789999999999999999 9999999


Q ss_pred             CCe-EEEEECCCCCceEeeccC--CCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         180 SKI-IGLFSDSDGRPLFFLKGH--NGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       180 dg~-i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      .|+ |+|||.++++.+.++...  ...|++++|||++.+|++++ +-|++.|+.++.
T Consensus       202 kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS-dKgTlHiF~l~~  257 (346)
T KOG2111|consen  202 KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS-DKGTLHIFSLRD  257 (346)
T ss_pred             CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc-CCCeEEEEEeec
Confidence            998 899999999999998643  45799999999999999999 899999999985

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.72  E-value=5.3e-14  Score=111.10  Aligned_cols=254  Identities=11%  Similarity=0.179  Sum_probs=169.2

Q ss_pred             CceeEEEEcCCCcEEEEeeC---CCeEEEEECCC--CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC
Q psy2305           2 DIEEDVDEAPDGTCLLTNSN---DNHLRTFDLPS--ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF   76 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~---d~~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~   76 (334)
                      ..++-|+|+|++++|+++-.   +|.|.-|.++.  +.+..            ...... .+.       .|..++++++
T Consensus        40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~------------ln~~~~-~g~-------~p~yvsvd~~   99 (346)
T COG2706          40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF------------LNRQTL-PGS-------PPCYVSVDED   99 (346)
T ss_pred             CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE------------eecccc-CCC-------CCeEEEECCC
Confidence            45678999999999988864   47788877765  44320            000000 011       1134677999


Q ss_pred             CcEEEEeeC-CCcEEEEeCCC-CeeeEEEcCccccc-------cccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCC
Q psy2305          77 TSYFLCSSM-YAPIHLWDSVG-GEIKATYRPYNQVD-------EVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGR  145 (334)
Q Consensus        77 ~~~l~~~~~-d~~i~iwd~~~-~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~  145 (334)
                      +++|+++.. .|.|.++-+++ |......+...|..       +..-+....+.|++++|++..  -..|.+|++.. ++
T Consensus       100 g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d-g~  178 (346)
T COG2706         100 GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD-GK  178 (346)
T ss_pred             CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc-Cc
Confidence            999999875 47899998865 44332222111211       111378999999999999875  56899999994 55


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEE-EeecCCeEEEEECCCC-CceEeecc---------CCCCeEEEEEccCCc
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICA-LGTYSKIIGLFSDSDG-RPLFFLKG---------HNGGITHLEFSSNGI  214 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~-~~~~~~~~---------~~~~i~~~~~~~~~~  214 (334)
                      .....+..+ ......+.|.|+|+++ +.. +.--+++|.+|..... ..+..++.         .......+..+|||+
T Consensus       179 L~~~~~~~v-~~G~GPRHi~FHpn~k-~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr  256 (346)
T COG2706         179 LTPADPAEV-KPGAGPRHIVFHPNGK-YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR  256 (346)
T ss_pred             ccccccccc-CCCCCcceEEEcCCCc-EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC
Confidence            443322222 3345678899999999 554 4556899999998763 22222221         234567899999999


Q ss_pred             EEEeeecCCCeEEEEEccCCCccceeecccc-cCCceEEEEecCCCceEEeeecC-CcEEEEeCCC
Q psy2305         215 LLFSGARKDCEIICWDLRNPGCILHTFPRQV-STNQRVYFDLTSCSNYLLSGNTN-GDLSIWNVNT  278 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~d-g~i~iwd~~~  278 (334)
                      +|+++.|....|.+|.+...+..+....... +......+.|+|.|++|+++.++ ..|.+|..+.
T Consensus       257 FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         257 FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            9999998778999999886544444333322 23446789999999999988875 4688886654

>KOG3881|consensus

Probab=99.72  E-value=2.2e-15  Score=119.45  Aligned_cols=200  Identities=17%  Similarity=0.141  Sum_probs=150.2

Q ss_pred             EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC--CcEEEE
Q psy2305          15 CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY--APIHLW   92 (334)
Q Consensus        15 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d--~~i~iw   92 (334)
                      .|++|-.+|.+++|....+....          .....+.  .+..+..+.-+|.      +..++++|+..  ..+.+|
T Consensus       117 ~Litc~~sG~l~~~~~k~~d~hs----------s~l~~la--~g~g~~~~r~~~~------~p~Iva~GGke~~n~lkiw  178 (412)
T KOG3881|consen  117 TLITCVSSGNLQVRHDKSGDLHS----------SKLIKLA--TGPGLYDVRQTDT------DPYIVATGGKENINELKIW  178 (412)
T ss_pred             EEEEEecCCcEEEEeccCCcccc----------ccceeee--cCCceeeeccCCC------CCceEecCchhcccceeee
Confidence            57778889999999998554210          0001222  2244555554332      34467779988  789999


Q ss_pred             eCCCCeeeEEEcCcccc----ccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEE
Q psy2305          93 DSVGGEIKATYRPYNQV----DEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIA  165 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (334)
                      |++..+.+..-+.....    .-+-.++.+.|-+.  ...|+++. -+++++||.+.+.+++.    .+.--+.+++++.
T Consensus       179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~----~fd~~E~~is~~~  254 (412)
T KOG3881|consen  179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA----QFDFLENPISSTG  254 (412)
T ss_pred             ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee----EeccccCcceeee
Confidence            99887555443322110    11225678899887  78888887 89999999998556665    4555578999999


Q ss_pred             EcCCCCcEEEEeecCCeEEEEECCCCCceEe-eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccce
Q psy2305         166 INPVHPDICALGTYSKIIGLFSDSDGRPLFF-LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       166 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                      ..|.++ ++++|...|.+..||++.++.... +.+-.+.|+++..+|.+++|++++ -|..++|+|+.+ .+++.
T Consensus       255 l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G-LDRyvRIhD~kt-rkll~  326 (412)
T KOG3881|consen  255 LTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG-LDRYVRIHDIKT-RKLLH  326 (412)
T ss_pred             ecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec-cceeEEEeeccc-chhhh
Confidence            999999 999999999999999999988777 888899999999999999999999 999999999998 44443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=6.3e-15  Score=127.75  Aligned_cols=205  Identities=9%  Similarity=-0.017  Sum_probs=136.9

Q ss_pred             CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee----CCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----LSEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      ..|.++|... ...+.+..+..     .+.+.+|+|||+.|+..+    +..|.+||+.+ +.. .    .+..+.+.+.
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~-----~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~~-~----~l~~~~g~~~  249 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSS-----LVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQR-E----LVGNFPGMTF  249 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCC-----CeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-CcE-E----EeecCCCccc
Confidence            3788888754 44444444333     789999999999888653    46899999986 333 2    2344556777


Q ss_pred             EEEEcCCCCcEEEEeecCCe--EEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC--eEEEEEccCCCccc
Q psy2305         163 AIAINPVHPDICALGTYSKI--IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC--EIICWDLRNPGCIL  238 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~iwd~~~~~~~~  238 (334)
                      ..+|+|+|+.++++.+.++.  |++||+.+++. ..+..+........|+|||+.|+..+..++  .|+++|+.. +. .
T Consensus       250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-~~-~  326 (435)
T PRK05137        250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-SN-P  326 (435)
T ss_pred             CcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-CC-e
Confidence            89999999933445555554  78889877654 456656666778999999999887762233  677888764 33 3


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecC---CcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTN---GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      ..+...  ........|+|+|++|+....+   ..|.+||+..+.             ...+. ....+..+.|  +|||
T Consensus       327 ~~lt~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-------------~~~lt-~~~~~~~p~~--spDG  388 (435)
T PRK05137        327 RRISFG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-------------ERILT-SGFLVEGPTW--APNG  388 (435)
T ss_pred             EEeecC--CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-------------eEecc-CCCCCCCCeE--CCCC
Confidence            444322  2334457799999999876543   368888886642             12222 1224678899  9999


Q ss_pred             ccceeeEEeeecc
Q psy2305         316 RDLLVADATCSGQ  328 (334)
Q Consensus       316 ~~~~~~l~t~~~d  328 (334)
                          ++|+..+.+
T Consensus       389 ----~~i~~~~~~  397 (435)
T PRK05137        389 ----RVIMFFRQT  397 (435)
T ss_pred             ----CEEEEEEcc
Confidence                887766543

>KOG3881|consensus

Probab=99.71  E-value=2e-15  Score=119.64  Aligned_cols=245  Identities=15%  Similarity=0.125  Sum_probs=176.5

Q ss_pred             ceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEE----cCccccccccceeEEEEcCCCCEEEEeeCC
Q psy2305          58 GGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATY----RPYNQVDEVTHAYSLAFSLDGNKIYAGFLS  133 (334)
Q Consensus        58 ~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~  133 (334)
                      ...+..++|.     ..++.+.+...+.+..+..+.+........+    ..+....   +|..++.. |+.++.+-++|
T Consensus        55 ~~ris~l~~~-----~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~---~I~gl~~~-dg~Litc~~sG  125 (412)
T KOG3881|consen   55 LDRISSLLFG-----VDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTK---SIKGLKLA-DGTLITCVSSG  125 (412)
T ss_pred             hhhhhhheee-----cCCceeEeeccccCcccccccccCCccccccccccccccccc---cccchhhc-CCEEEEEecCC
Confidence            3456666663     2455566666666777777777766655443    1111111   55566544 45555555699


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC--CeEEEEECCCCCceEeeccC---------CC
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS--KIIGLFSDSDGRPLFFLKGH---------NG  202 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~---------~~  202 (334)
                      .+.+|....+...  ..++........+..+.-++..++++++|+..  ..+.+||+++.+.+.+-+.-         .-
T Consensus       126 ~l~~~~~k~~d~h--ss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv  203 (412)
T KOG3881|consen  126 NLQVRHDKSGDLH--SSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV  203 (412)
T ss_pred             cEEEEeccCCccc--cccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence            9999998842211  10101122235567777788877678889998  88999999887555443321         23


Q ss_pred             CeEEEEEccC--CcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         203 GITHLEFSSN--GILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       203 ~i~~~~~~~~--~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      .++++.|-|.  ...|++++ .-+.+++||.+....++..+...  ...+.++...|.++++++|..-|.+..||++.+ 
T Consensus       204 W~tdi~Fl~g~~~~~fat~T-~~hqvR~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~-  279 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATIT-RYHQVRLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG-  279 (412)
T ss_pred             eeccceecCCCCCceEEEEe-cceeEEEecCcccCcceeEeccc--cCcceeeeecCCCcEEEEecccchhheecccCc-
Confidence            4678889887  78899999 79999999999877788777755  566778888999999999999999999999998 


Q ss_pred             CCCCCCccccccccc-eecccccccceeeeccCCCcccceeeEEeeecceeeeeC
Q psy2305         281 LPSSPYEESVQEPLY-KFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVKQ  334 (334)
Q Consensus       281 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~~  334 (334)
                                 +.+. .+.+..+.|+++..  +|..    ++||+||-|+.+.|.
T Consensus       280 -----------kl~g~~~kg~tGsirsih~--hp~~----~~las~GLDRyvRIh  317 (412)
T KOG3881|consen  280 -----------KLLGCGLKGITGSIRSIHC--HPTH----PVLASCGLDRYVRIH  317 (412)
T ss_pred             -----------eeeccccCCccCCcceEEE--cCCC----ceEEeeccceeEEEe
Confidence                       4444 48888899999999  9999    999999999998873

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=5.9e-15  Score=127.73  Aligned_cols=204  Identities=14%  Similarity=0.058  Sum_probs=133.9

Q ss_pred             CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee----CCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----LSEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      ..|.+||.... ..+.+..+..     .+.+.+|+|||+.|+..+    ...|.+||+.. +....     +........
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~-----~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~~~-----l~~~~g~~~  251 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAE-----PILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQREL-----VASFRGING  251 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCC-----ccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCEEE-----eccCCCCcc
Confidence            36889998544 3344443333     688999999999988654    24699999975 33222     223344456


Q ss_pred             EEEEcCCCCcEEE-EeecCC--eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCe--EEEEEccCCCcc
Q psy2305         163 AIAINPVHPDICA-LGTYSK--IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCE--IICWDLRNPGCI  237 (334)
Q Consensus       163 ~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~--i~iwd~~~~~~~  237 (334)
                      ++.|+|+|+ .++ +.+.+|  .|++||+.+++. ..+..+.......+|+|||+.|+..+..++.  |+++|+.. +. 
T Consensus       252 ~~~~SpDG~-~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g~-  327 (433)
T PRK04922        252 APSFSPDGR-RLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-GS-  327 (433)
T ss_pred             CceECCCCC-EEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-
Confidence            789999999 554 555555  699999987764 4455565556789999999988877623444  66666654 33 


Q ss_pred             ceeecccccCCceEEEEecCCCceEEeeecCC---cEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCC
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG---DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                      ...+...  .......+|+|+|++|+..+.++   .|.+||+.+++            .. .+. +........|  +||
T Consensus       328 ~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~------------~~-~Lt-~~~~~~~p~~--spd  389 (433)
T PRK04922        328 AERLTFQ--GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS------------VR-TLT-PGSLDESPSF--APN  389 (433)
T ss_pred             eEEeecC--CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC------------eE-ECC-CCCCCCCceE--CCC
Confidence            3333322  22333578999999998765432   69999998762            22 232 2223557799  999


Q ss_pred             cccceeeEEeeecc
Q psy2305         315 ERDLLVADATCSGQ  328 (334)
Q Consensus       315 ~~~~~~~l~t~~~d  328 (334)
                      |    ++|+..+.+
T Consensus       390 G----~~i~~~s~~  399 (433)
T PRK04922        390 G----SMVLYATRE  399 (433)
T ss_pred             C----CEEEEEEec
Confidence            9    887776653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.69  E-value=3.9e-13  Score=106.25  Aligned_cols=242  Identities=10%  Similarity=0.072  Sum_probs=161.2

Q ss_pred             cccceecCCCcEEEEeeCC---CcEEEEeCCC--CeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEc
Q psy2305          68 PKTSSIDGFTSYFLCSSMY---APIHLWDSVG--GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFST  140 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~~d---~~i~iwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~  140 (334)
                      |+.++++|++++|.++..+   |.|.-|.+..  |++...-+. ...+.  +.+.++++++|++++++.  .|.|.++-+
T Consensus        42 ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~  118 (346)
T COG2706          42 PTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPL  118 (346)
T ss_pred             CceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEc
Confidence            4556778899998887654   6777776653  554322111 11111  448899999999999886  799999999


Q ss_pred             CCCCCeeeeecccccccccc----------eEEEEEcCCCCcEEEEee-cCCeEEEEECCCCCceEee---ccCCCCeEE
Q psy2305         141 DRPGRECVSRNLKPWFRKNI----------VSAIAINPVHPDICALGT-YSKIIGLFSDSDGRPLFFL---KGHNGGITH  206 (334)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~---~~~~~~i~~  206 (334)
                      +..+......  ....|.+.          +....+.|+++ ++++.. .-.+|.+|++..++....-   -.....-+.
T Consensus       119 ~~dG~l~~~v--~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH  195 (346)
T COG2706         119 QADGSLQPVV--QVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH  195 (346)
T ss_pred             ccCCccccce--eeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence            8754433221  12333333          88899999999 666654 3357999999877543221   123455689


Q ss_pred             EEEccCCcEEEeeecCCCeEEEEEccCCCccceeecc-------cccCCceEEEEecCCCceEEeeec-CCcEEEEeCCC
Q psy2305         207 LEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR-------QVSTNQRVYFDLTSCSNYLLSGNT-NGDLSIWNVNT  278 (334)
Q Consensus       207 ~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~  278 (334)
                      |.|+|++++.+..+.-+++|.+|........+..+..       ........++..+|||++|.++.. ...|.+|.+..
T Consensus       196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            9999999999888867999999999874333333321       112345567889999999988754 34788887765


Q ss_pred             CCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecce
Q psy2305         279 SNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQI  329 (334)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~  329 (334)
                      ....        .........+....+++.|  +|++    ++|+++..|+
T Consensus       276 ~~g~--------L~~~~~~~teg~~PR~F~i--~~~g----~~Liaa~q~s  312 (346)
T COG2706         276 DGGK--------LELVGITPTEGQFPRDFNI--NPSG----RFLIAANQKS  312 (346)
T ss_pred             CCCE--------EEEEEEeccCCcCCcccee--CCCC----CEEEEEccCC
Confidence            4210        0233333444455789999  9999    9999988764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.69  E-value=6e-14  Score=121.65  Aligned_cols=231  Identities=15%  Similarity=0.113  Sum_probs=145.2

Q ss_pred             CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC---CcEEEEeCCCCee
Q psy2305          23 NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY---APIHLWDSVGGEI   99 (334)
Q Consensus        23 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~   99 (334)
                      ..|.++|.......               .+.. +...+....|       +|||++|+.+..+   ..|.+||+.+++.
T Consensus       170 ~~l~~~d~~g~~~~---------------~l~~-~~~~~~~p~~-------Spdg~~la~~~~~~~~~~i~v~d~~~g~~  226 (417)
T TIGR02800       170 YELQVADYDGANPQ---------------TITR-SREPILSPAW-------SPDGQKLAYVSFESGKPEIYVQDLATGQR  226 (417)
T ss_pred             ceEEEEcCCCCCCE---------------Eeec-CCCceecccC-------CCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            35777787654432               2222 2334555555       8899999887644   4799999988765


Q ss_pred             eEEEcCccccccccceeEEEEcCCCCEEEEe-e-C--CcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEE
Q psy2305         100 KATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-L--SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICA  175 (334)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  175 (334)
                      ..... ...     .+.+++|+|||+.|+.. . +  ..|.+||+.+ + ...    .+..+........|+|+|+ .|+
T Consensus       227 ~~~~~-~~~-----~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~-~-~~~----~l~~~~~~~~~~~~s~dg~-~l~  293 (417)
T TIGR02800       227 EKVAS-FPG-----MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG-K-QLT----RLTNGPGIDTEPSWSPDGK-SIA  293 (417)
T ss_pred             EEeec-CCC-----CccceEECCCCCEEEEEECCCCCccEEEEECCC-C-CEE----ECCCCCCCCCCEEECCCCC-EEE
Confidence            43322 121     45678999999988743 3 3  3588888875 3 222    2333444455778999999 666


Q ss_pred             Eeec-CC--eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC---eEEEEEccCCCccceeecccccCCc
Q psy2305         176 LGTY-SK--IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC---EIICWDLRNPGCILHTFPRQVSTNQ  249 (334)
Q Consensus       176 ~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~  249 (334)
                      ..+. ++  .|+++|+.+++. ..+..+...+..+.|+|+|++|+.++ .++   .|.+||+.+ +. ...+...   ..
T Consensus       294 ~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~-~~~~~~~i~~~d~~~-~~-~~~l~~~---~~  366 (417)
T TIGR02800       294 FTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVH-REGGGFNIAVMDLDG-GG-ERVLTDT---GL  366 (417)
T ss_pred             EEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEE-ccCCceEEEEEeCCC-CC-eEEccCC---CC
Confidence            5543 33  688888876654 34444556677889999999999888 565   788888875 33 2333321   11


Q ss_pred             eEEEEecCCCceEEeeecCC---cEEEEeCCCCCCCCCCCccccccccceecccccccceeee
Q psy2305         250 RVYFDLTSCSNYLLSGNTNG---DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW  309 (334)
Q Consensus       250 ~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  309 (334)
                      .....|+|+|++|+..+.++   .+.+.+....             ....+..+.+.+..++|
T Consensus       367 ~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~-------------~~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       367 DESPSFAPNGRMILYATTRGGRGVLGLVSTDGR-------------FRARLPLGNGDVREPAW  416 (417)
T ss_pred             CCCceECCCCCEEEEEEeCCCcEEEEEEECCCc-------------eeeECCCCCCCcCCCCC
Confidence            23357999999888776653   4556565442             33334434455666666

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=1e-13  Score=120.13  Aligned_cols=216  Identities=13%  Similarity=0.061  Sum_probs=133.0

Q ss_pred             ceeEEEEEEecccceecCCCcEEEEeeCC-C--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-C
Q psy2305          58 GGIIYDYVWYPKTSSIDGFTSYFLCSSMY-A--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-L  132 (334)
Q Consensus        58 ~~~v~~~~~~~~~~~~s~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d  132 (334)
                      ...+....|       +|||+.|+..+.+ +  .|.+||+.+++....... ..     .....+|+|||+.|+.. . +
T Consensus       217 ~~~~~~p~w-------SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g-----~~~~~~wSPDG~~La~~~~~~  283 (448)
T PRK04792        217 PEPLMSPAW-------SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG-----INGAPRFSPDGKKLALVLSKD  283 (448)
T ss_pred             CCcccCceE-------CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CC-----CcCCeeECCCCCEEEEEEeCC
Confidence            345555566       7899988876543 2  588889988765332221 11     33478999999988754 4 5


Q ss_pred             Cc--EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee-cCC--eEEEEECCCCCceEeeccCCCCeEEE
Q psy2305         133 SE--VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT-YSK--IIGLFSDSDGRPLFFLKGHNGGITHL  207 (334)
Q Consensus       133 ~~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~  207 (334)
                      +.  |.++|+.+  ....    .+..+........|+|+|+ .|+..+ .++  .|+++|+.+++... +..........
T Consensus       284 g~~~Iy~~dl~t--g~~~----~lt~~~~~~~~p~wSpDG~-~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~  355 (448)
T PRK04792        284 GQPEIYVVDIAT--KALT----RITRHRAIDTEPSWHPDGK-SLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGG  355 (448)
T ss_pred             CCeEEEEEECCC--CCeE----ECccCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCe
Confidence            54  66677764  3333    2344445567889999999 665544 333  57777887766433 32222233457


Q ss_pred             EEccCCcEEEeeecCCCe--EEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-C--cEEEEeCCCCCCC
Q psy2305         208 EFSSNGILLFSGARKDCE--IICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-G--DLSIWNVNTSNLP  282 (334)
Q Consensus       208 ~~~~~~~~l~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~  282 (334)
                      +|+|||++|+..+..++.  |.++|+.+ +. ...+....   ......|+|+|+.|+....+ +  .+.+++...    
T Consensus       356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----  426 (448)
T PRK04792        356 SITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----  426 (448)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC----
Confidence            899999998887633443  55566665 33 23333221   11234699999988766543 3  367778754    


Q ss_pred             CCCCccccccccceecccccccceeeeccCCC
Q psy2305         283 SSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                               .....+..+.+.+...+|  +|-
T Consensus       427 ---------~~~~~l~~~~g~~~~p~W--sp~  447 (448)
T PRK04792        427 ---------RFKARLPAGQGEVKSPAW--SPF  447 (448)
T ss_pred             ---------CceEECcCCCCCcCCCcc--CCC
Confidence                     344455555667788899  773

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.68  E-value=9.8e-15  Score=111.39  Aligned_cols=151  Identities=16%  Similarity=0.241  Sum_probs=104.9

Q ss_pred             ecCCCcEEEEeeC---C-------CcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCEEEE--ee-CCcEEEE
Q psy2305          73 IDGFTSYFLCSSM---Y-------APIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA--GF-LSEVKIF  138 (334)
Q Consensus        73 ~s~~~~~l~~~~~---d-------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~-d~~i~i~  138 (334)
                      |+++|++|++-..   |       +...+|.++. +.....+.....    ++|.+++|+|+|+.+++  |. ++.|.+|
T Consensus        13 W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~----~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen   13 WQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE----GPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             ecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC----CceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            3678887665332   1       2344554422 223333332111    16999999999998764  33 6899999


Q ss_pred             EcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeec---CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcE
Q psy2305         139 STDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY---SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGIL  215 (334)
Q Consensus       139 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  215 (334)
                      |++  .+.+..    +  +...+..+.|+|+|+ ++++++.   .|.|.+||.++.+.+.... |. .++.++|+|+|++
T Consensus        89 d~~--~~~i~~----~--~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~  157 (194)
T PF08662_consen   89 DVK--GKKIFS----F--GTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRY  157 (194)
T ss_pred             cCc--ccEeEe----e--cCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCE
Confidence            997  444442    2  346778999999999 8888764   4779999999888887765 33 4789999999999


Q ss_pred             EEeeec-----CCCeEEEEEccCCCcccee
Q psy2305         216 LFSGAR-----KDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       216 l~~~~~-----~d~~i~iwd~~~~~~~~~~  240 (334)
                      |+++..     .|+.++||+..  ++.+..
T Consensus       158 ~~ta~t~~r~~~dng~~Iw~~~--G~~l~~  185 (194)
T PF08662_consen  158 LATATTSPRLRVDNGFKIWSFQ--GRLLYK  185 (194)
T ss_pred             EEEEEeccceeccccEEEEEec--CeEeEe
Confidence            999873     27889999986  554443

>KOG2315|consensus

Probab=99.67  E-value=1e-13  Score=115.01  Aligned_cols=266  Identities=15%  Similarity=0.212  Sum_probs=171.2

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      .+..++|++|+++|.+. +..++|++.......                +.... ..++++.|       ||-+.+|.+=
T Consensus        37 ~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~----------------lt~~~-~~~~~L~f-------SP~g~yL~T~   91 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV----------------LCVEL-KKTYDLLF-------SPKGNYLLTW   91 (566)
T ss_pred             ceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE----------------EEecc-ceeeeeee-------cccccccccc
Confidence            56788999999887764 568999999887532                22222 25677666       6677777652


Q ss_pred             -----eC-----CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc
Q psy2305          84 -----SM-----YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        84 -----~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                           ..     .-.+.+|+++++.....++....     .-++..|+.|..+.+--..+.+++|++.. .+.+.     
T Consensus        92 e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q-----~~W~~qfs~dEsl~arlv~nev~f~~~~~-f~~~~-----  160 (566)
T KOG2315|consen   92 EPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ-----NGWVPQFSIDESLAARLVSNEVQFYDLGS-FKTIQ-----  160 (566)
T ss_pred             cccccccCCCCCCCceeeeeeccceehhheehhhh-----cCcccccccchhhhhhhhcceEEEEecCC-cccee-----
Confidence                 11     23578999999666555554333     22688888887654433366788888764 11111     


Q ss_pred             ccccccceEEEEEcC----------------------------------------------------CCCcEEEEeec--
Q psy2305         154 PWFRKNIVSAIAINP----------------------------------------------------VHPDICALGTY--  179 (334)
Q Consensus       154 ~~~~~~~v~~~~~~~----------------------------------------------------~~~~~l~~~~~--  179 (334)
                      ..-|...++.+.++|                                                    -|..+|+.++.  
T Consensus       161 ~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdV  240 (566)
T KOG2315|consen  161 HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDV  240 (566)
T ss_pred             eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEee
Confidence            122233344444444                                                    44323322221  


Q ss_pred             C---------CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEe--eecCCCeEEEEEccCCCccceeecccccCC
Q psy2305         180 S---------KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFS--GARKDCEIICWDLRNPGCILHTFPRQVSTN  248 (334)
Q Consensus       180 d---------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  248 (334)
                      |         .++++++++.......+. ..++|.++.|+|+++-+++  |- +-..+.|+|++  +.++..+.    .+
T Consensus       241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGf-MPAkvtifnlr--~~~v~df~----eg  312 (566)
T KOG2315|consen  241 DKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGF-MPAKVTIFNLR--GKPVFDFP----EG  312 (566)
T ss_pred             cCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEec-ccceEEEEcCC--CCEeEeCC----CC
Confidence            1         134455544222222222 4689999999999976554  44 67889999998  67777665    45


Q ss_pred             ceEEEEecCCCceEEeeec---CCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEee
Q psy2305         249 QRVYFDLTSCSNYLLSGNT---NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       249 ~~~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~  325 (334)
                      +-.++-|+|.|++++.++.   .|.|-|||+.+.            +.+..+...  .-+-+.|  +|||    ++++|+
T Consensus       313 pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~------------K~i~~~~a~--~tt~~eW--~PdG----e~flTA  372 (566)
T KOG2315|consen  313 PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR------------KLIAKFKAA--NTTVFEW--SPDG----EYFLTA  372 (566)
T ss_pred             CccceEECCCCCEEEEeecCCCCCceEEEeccch------------hhccccccC--CceEEEE--cCCC----cEEEEE
Confidence            5566789999999998776   489999999996            666666643  2456789  9999    999999


Q ss_pred             ecceeeee
Q psy2305         326 SGQITNVK  333 (334)
Q Consensus       326 ~~d~~i~~  333 (334)
                      ..--++.|
T Consensus       373 TTaPRlrv  380 (566)
T KOG2315|consen  373 TTAPRLRV  380 (566)
T ss_pred             eccccEEe
Confidence            87644443

>KOG2314|consensus

Probab=99.67  E-value=5e-14  Score=116.75  Aligned_cols=271  Identities=12%  Similarity=0.094  Sum_probs=168.3

Q ss_pred             eEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee
Q psy2305           5 EDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS   84 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~   84 (334)
                      +-+.|||-|.||+|--..| |.+|--.+-...+                +..|. .|.-       +.|||+.++|++-+
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~----------------RF~Hp-~Vq~-------idfSP~EkYLVT~s  268 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ----------------RFYHP-GVQF-------IDFSPNEKYLVTYS  268 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHH----------------hccCC-Ccee-------eecCCccceEEEec
Confidence            4689999999999987766 8999766655431                12232 2333       55688999999865


Q ss_pred             C-----------CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc
Q psy2305          85 M-----------YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        85 ~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      .           ...++|||+.+|...+.|........  .-.-+.||.|++++|.-..++|.||+... -..+...   
T Consensus       269 ~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~--~WP~frWS~DdKy~Arm~~~sisIyEtps-f~lld~K---  342 (698)
T KOG2314|consen  269 PEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYL--KWPIFRWSHDDKYFARMTGNSISIYETPS-FMLLDKK---  342 (698)
T ss_pred             CCccccCcccCCCceEEEEEccccchhcceeccCCCcc--ccceEEeccCCceeEEeccceEEEEecCc-eeeeccc---
Confidence            3           14799999999999988876432210  22357899999999976667899998764 2222211   


Q ss_pred             ccccccceEEEEEcCCCCcEEEEeecC-----CeEEE-------------------------------------------
Q psy2305         154 PWFRKNIVSAIAINPVHPDICALGTYS-----KIIGL-------------------------------------------  185 (334)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i-------------------------------------------  185 (334)
                       .-....|....|+|.+. +||-=...     ..+.+                                           
T Consensus       343 -slki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~  420 (698)
T KOG2314|consen  343 -SLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKV  420 (698)
T ss_pred             -ccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccc
Confidence             11234466667777665 55422110     01111                                           


Q ss_pred             ---------EECCCCCc-eEeeccCCCCeEEEEEccCCcEEEeeec--CCCeEEEEEccCCCc---cceeecccccCCce
Q psy2305         186 ---------FSDSDGRP-LFFLKGHNGGITHLEFSSNGILLFSGAR--KDCEIICWDLRNPGC---ILHTFPRQVSTNQR  250 (334)
Q Consensus       186 ---------~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~  250 (334)
                               +.++.... +..+ .-...|...+|-|.|..+++.+.  ...++.+|.+.....   .+..+.    ....
T Consensus       421 ~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d----k~~~  495 (698)
T KOG2314|consen  421 KGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD----KKFA  495 (698)
T ss_pred             cceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc----cccc
Confidence                     11111110 0011 12345677889999987766541  245788998884222   222332    3445


Q ss_pred             EEEEecCCCceEEeee---cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeec
Q psy2305         251 VYFDLTSCSNYLLSGN---TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       251 ~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                      ..+.|+|.|++++.+.   ..|.+.++|......           .......|. ..+.+.|  .|.|    +|++|++.
T Consensus       496 N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~-----------k~~~~~eh~-~at~veW--DPtG----RYvvT~ss  557 (698)
T KOG2314|consen  496 NTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL-----------KDTASPEHF-AATEVEW--DPTG----RYVVTSSS  557 (698)
T ss_pred             ceEEEcCCCcEEEEEEecccccceEEEecchhhh-----------hhccCcccc-ccccceE--CCCC----CEEEEeee
Confidence            6688999999998764   478999999885311           111222333 4678999  9999    99999987


Q ss_pred             ceee
Q psy2305         328 QITN  331 (334)
Q Consensus       328 d~~i  331 (334)
                      -...
T Consensus       558 ~wrh  561 (698)
T KOG2314|consen  558 SWRH  561 (698)
T ss_pred             hhhh
Confidence            6543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=2.3e-13  Score=118.22  Aligned_cols=234  Identities=14%  Similarity=0.074  Sum_probs=146.0

Q ss_pred             eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC---CcEEEEeCCCCeee
Q psy2305          24 HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY---APIHLWDSVGGEIK  100 (334)
Q Consensus        24 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~  100 (334)
                      .|.++|.+.....               .+. .+...+....|       +|||+.|+..+.+   ..|.+||+.+++..
T Consensus       180 ~l~~~d~~g~~~~---------------~l~-~~~~~~~~p~w-------SpDG~~la~~s~~~~~~~l~~~~l~~g~~~  236 (430)
T PRK00178        180 TLQRSDYDGARAV---------------TLL-QSREPILSPRW-------SPDGKRIAYVSFEQKRPRIFVQNLDTGRRE  236 (430)
T ss_pred             EEEEECCCCCCce---------------EEe-cCCCceeeeeE-------CCCCCEEEEEEcCCCCCEEEEEECCCCCEE
Confidence            4777787765432               222 23355666666       7799998876543   36889999887654


Q ss_pred             EEEcCccccccccceeEEEEcCCCCEEEE-ee-CC--cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEE
Q psy2305         101 ATYRPYNQVDEVTHAYSLAFSLDGNKIYA-GF-LS--EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICAL  176 (334)
Q Consensus       101 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  176 (334)
                      ..... ..     .+....|+|||+.|+. .. ++  .|.+||+.+ + ...    .+..+........|+|+|+ .++.
T Consensus       237 ~l~~~-~g-----~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~-~-~~~----~lt~~~~~~~~~~~spDg~-~i~f  303 (430)
T PRK00178        237 QITNF-EG-----LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS-R-QLS----RVTNHPAIDTEPFWGKDGR-TLYF  303 (430)
T ss_pred             EccCC-CC-----CcCCeEECCCCCEEEEEEccCCCceEEEEECCC-C-CeE----EcccCCCCcCCeEECCCCC-EEEE
Confidence            33221 11     3457899999998874 33 44  677888875 3 233    2334445566789999999 6655


Q ss_pred             ee-cCC--eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC--eEEEEEccCCCccceeecccccCCceE
Q psy2305         177 GT-YSK--IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC--EIICWDLRNPGCILHTFPRQVSTNQRV  251 (334)
Q Consensus       177 ~~-~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~  251 (334)
                      .+ .+|  .|+++|+.+++... +...........|+|+|++|+..++.++  .|.+||+.+ +. ...+...   ....
T Consensus       304 ~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~~~lt~~---~~~~  377 (430)
T PRK00178        304 TSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-VRILTDT---SLDE  377 (430)
T ss_pred             EECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC-CC-EEEccCC---CCCC
Confidence            44 333  57888887776433 3222223346789999999988773333  578888876 33 2333321   1112


Q ss_pred             EEEecCCCceEEeeecC---CcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCC
Q psy2305         252 YFDLTSCSNYLLSGNTN---GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       252 ~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                      ...|+|+|++++..+.+   ..+.++++...             ....+..+.+.+...+|  +|-
T Consensus       378 ~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-------------~~~~l~~~~g~~~~p~w--s~~  428 (430)
T PRK00178        378 SPSVAPNGTMLIYATRQQGRGVLMLVSINGR-------------VRLPLPTAQGEVREPSW--SPY  428 (430)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEEECCCC-------------ceEECcCCCCCcCCCcc--CCC
Confidence            35799999998876653   35677777553             33344445566788888  764

>KOG0644|consensus

Probab=99.65  E-value=3.1e-16  Score=135.32  Aligned_cols=192  Identities=21%  Similarity=0.322  Sum_probs=145.5

Q ss_pred             ceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC
Q psy2305         114 HAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR  192 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  192 (334)
                      .|+|+.|...|.++++|+ |..++||.+.+ +..+.    ...+|.+.++.++.+.+.- ++++++.|..|++|-+.++.
T Consensus       192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lA----s~rGhs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  192 AVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLA----SCRGHSGDITDLAVSSNNT-MIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             heeeeeeccccceEeecCccceeeeeeccc-hhhhc----cCCCCccccchhccchhhh-hhhhcccCceEEEEecCCCc
Confidence            799999999999999998 89999999886 45444    6899999999999999888 99999999999999999999


Q ss_pred             ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC-CCc------------cceeec----------ccc----
Q psy2305         193 PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN-PGC------------ILHTFP----------RQV----  245 (334)
Q Consensus       193 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~-~~~------------~~~~~~----------~~~----  245 (334)
                      ++..+.+|.+.|++++|+|-.    +.+ .||++++||.+- +..            ....+.          +..    
T Consensus       266 pvsvLrghtgavtaiafsP~~----sss-~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea  340 (1113)
T KOG0644|consen  266 PVSVLRGHTGAVTAIAFSPRA----SSS-DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA  340 (1113)
T ss_pred             hHHHHhccccceeeeccCccc----cCC-CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence            999999999999999999965    566 799999999982 100            000000          000    


Q ss_pred             cCCceEEEEecCCC-----------ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCC
Q psy2305         246 STNQRVYFDLTSCS-----------NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       246 ~~~~~~~~~~s~~~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                      .......++|....           .+.+++-.+-.+.+|++.++            .....+.+|.+.+..+.+  +|-
T Consensus       341 ~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g------------~l~H~l~ghsd~~yvLd~--Hpf  406 (1113)
T KOG0644|consen  341 RNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG------------QLLHNLMGHSDEVYVLDV--HPF  406 (1113)
T ss_pred             ccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc------------hhhhhhcccccceeeeee--cCC
Confidence            00001111122222           23334444567888999888            677888999999999999  998


Q ss_pred             cccceeeEEeeecceeeee
Q psy2305         315 ERDLLVADATCSGQITNVK  333 (334)
Q Consensus       315 ~~~~~~~l~t~~~d~~i~~  333 (334)
                      ++   +...+++.||...|
T Consensus       407 n~---ri~msag~dgst~i  422 (1113)
T KOG0644|consen  407 NP---RIAMSAGYDGSTII  422 (1113)
T ss_pred             Cc---HhhhhccCCCceEe
Confidence            74   56677888887654

>KOG4547|consensus

Probab=99.63  E-value=3.4e-13  Score=112.66  Aligned_cols=201  Identities=17%  Similarity=0.182  Sum_probs=154.0

Q ss_pred             cCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEe------cc-------cceecCC
Q psy2305          10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWY------PK-------TSSIDGF   76 (334)
Q Consensus        10 sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~-------~~~~s~~   76 (334)
                      .|-+.|+|....||.+++|+...++..+.+.....            -.+...+..|.      |.       .-.-+.+
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~------------~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~   69 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS------------LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD   69 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchh------------ccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence            35567999999999999999998877542222111            11233333442      10       0111345


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccc
Q psy2305          77 TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        77 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      ...++-|...|.|.+|++..|+....+....|.+   .|.++.++.+-..|.+++ |+.+..|+... .+.+.    ...
T Consensus        70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~---~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~----~~~  141 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYG---NVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIR----IWK  141 (541)
T ss_pred             ceEEEeecCCccEEEEEecCCeEEEEEecCCCCC---cceeeecccccCceEecCCceeEEEEeccc-ceeee----eec
Confidence            5578888899999999999999988887655544   899999999888898876 99999999985 44444    567


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccC-----CcEEEeeecCCCeEEEEE
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN-----GILLFSGARKDCEIICWD  230 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~~d~~i~iwd  230 (334)
                      .....+.+++.+||+. .+++++  +.|.+||+++++.+..|++|.++|+++.|.-+     |.+++++...+..|.+|-
T Consensus       142 ~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  142 EQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             cCCCccceEEEcCCCC-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            7778899999999999 888775  79999999999999999999999999999877     777776653677788887


Q ss_pred             ccC
Q psy2305         231 LRN  233 (334)
Q Consensus       231 ~~~  233 (334)
                      ...
T Consensus       219 v~~  221 (541)
T KOG4547|consen  219 VEK  221 (541)
T ss_pred             EEc
Confidence            765

>KOG2041|consensus

Probab=99.62  E-value=1.4e-13  Score=117.65  Aligned_cols=280  Identities=11%  Similarity=0.085  Sum_probs=193.3

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeC-CCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWR-PSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      ..|++|+....|+|+|+.||.+++..+.+........+ .......+..++.+ |.+.|.-+.|       +.+.+.|-+
T Consensus        17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTW-------Ne~~QKLTt   88 (1189)
T KOG2041|consen   17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTW-------NENNQKLTT   88 (1189)
T ss_pred             EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEe-------ccccccccc
Confidence            57999999999999999999999999876654322111 11122234456665 5577888888       557778999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      +..+|.|.+|-+-.|...........   .+-|.+++|+.||..++... ||.|.+=.++  |..+.-.  .+++  ...
T Consensus        89 SDt~GlIiVWmlykgsW~EEMiNnRn---KSvV~SmsWn~dG~kIcIvYeDGavIVGsvd--GNRIwgK--eLkg--~~l  159 (1189)
T KOG2041|consen   89 SDTSGLIIVWMLYKGSWCEEMINNRN---KSVVVSMSWNLDGTKICIVYEDGAVIVGSVD--GNRIWGK--ELKG--QLL  159 (1189)
T ss_pred             cCCCceEEEEeeecccHHHHHhhCcC---ccEEEEEEEcCCCcEEEEEEccCCEEEEeec--cceecch--hcch--hec
Confidence            99999999999988775443332111   12789999999999999887 9999988887  5544321  1222  234


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCC-------ceEe----eccCCCCeEEEEEc--------cCCcEEEeeecC
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGR-------PLFF----LKGHNGGITHLEFS--------SNGILLFSGARK  222 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-------~~~~----~~~~~~~i~~~~~~--------~~~~~l~~~~~~  222 (334)
                      ..+.|++|.+ .++.+-.+|.+++||.+..-       +...    +......|..+.|.        |+...|+++- .
T Consensus       160 ~hv~ws~D~~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy-~  237 (1189)
T KOG2041|consen  160 AHVLWSEDLE-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY-A  237 (1189)
T ss_pred             cceeecccHH-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE-c
Confidence            5789999998 88888899999999974321       1011    11122335566663        5777899998 8


Q ss_pred             CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC---------CcEEEEeCCCCCCCCCCCccccccc
Q psy2305         223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN---------GDLSIWNVNTSNLPSSPYEESVQEP  293 (334)
Q Consensus       223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~  293 (334)
                      .|.+.|..-.+...++..-.    +-.+....|+++|..|++++.+         +.|++|..-.             +.
T Consensus       238 nGr~QiMR~eND~~Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G-------------~i  300 (1189)
T KOG2041|consen  238 NGRMQIMRSENDPEPVVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG-------------HI  300 (1189)
T ss_pred             CceehhhhhcCCCCCeEEec----ccEeecceecCCCcEEEEccCcccccCccccceEEEeccch-------------hh
Confidence            99998876655344332222    4566778999999999998764         2566665443             56


Q ss_pred             cceecccccccceeeeccCCCcccceeeEEee
Q psy2305         294 LYKFSAHQDCTNGVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~  325 (334)
                      +..++.....|++++|  -..|    -.+|.+
T Consensus       301 ~gtlkvpg~~It~lsW--Eg~g----LriA~A  326 (1189)
T KOG2041|consen  301 VGTLKVPGSCITGLSW--EGTG----LRIAIA  326 (1189)
T ss_pred             eEEEecCCceeeeeEE--cCCc----eEEEEE
Confidence            6777777788999999  7666    555544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.2e-12  Score=112.49  Aligned_cols=214  Identities=12%  Similarity=-0.011  Sum_probs=128.2

Q ss_pred             ecCCCcE--E-EEeeCCC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CC----cEEEEEcC
Q psy2305          73 IDGFTSY--F-LCSSMYA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LS----EVKIFSTD  141 (334)
Q Consensus        73 ~s~~~~~--l-~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~----~i~i~d~~  141 (334)
                      |||||+.  + ++...++  .|.+.++.+++..+.... ..     .....+|+|||+.|+...  +|    .+..|++.
T Consensus       192 wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~g-----~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~  265 (428)
T PRK01029        192 WMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-QG-----NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE  265 (428)
T ss_pred             EccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-CC-----CccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence            3789875  2 2444443  577778887765433322 22     345689999999888543  23    33446665


Q ss_pred             CC-CCeeeeecccccccccceEEEEEcCCCCcEEEEee-cCCe--EEEEECCC-CCceEeeccCCCCeEEEEEccCCcEE
Q psy2305         142 RP-GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT-YSKI--IGLFSDSD-GRPLFFLKGHNGGITHLEFSSNGILL  216 (334)
Q Consensus       142 ~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l  216 (334)
                      .. ......   ............+|+|||+ .|+..+ .+|.  |+++++.. +.....+..+...+....|+|||+.|
T Consensus       266 ~g~~g~~~~---lt~~~~~~~~~p~wSPDG~-~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L  341 (428)
T PRK01029        266 TGAIGKPRR---LLNEAFGTQGNPSFSPDGT-RLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI  341 (428)
T ss_pred             cCCCCcceE---eecCCCCCcCCeEECCCCC-EEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence            31 111121   1222223446789999999 666554 4564  44445432 33345555555667789999999999


Q ss_pred             EeeecCC--CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeec---CCcEEEEeCCCCCCCCCCCccccc
Q psy2305         217 FSGARKD--CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT---NGDLSIWNVNTSNLPSSPYEESVQ  291 (334)
Q Consensus       217 ~~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~  291 (334)
                      +..+..+  ..|.+||+.+ ++. ..+...  ........|+|||++|+....   ...|.++|+..++           
T Consensus       342 af~~~~~g~~~I~v~dl~~-g~~-~~Lt~~--~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~-----------  406 (428)
T PRK01029        342 AFCSVIKGVRQICVYDLAT-GRD-YQLTTS--PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK-----------  406 (428)
T ss_pred             EEEEcCCCCcEEEEEECCC-CCe-EEccCC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-----------
Confidence            8776222  4689999986 443 334322  223456789999998875433   3568888998762           


Q ss_pred             cccceecccccccceeeeccCCCc
Q psy2305         292 EPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       292 ~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                        ...+....+.+...+|  +|-.
T Consensus       407 --~~~Lt~~~g~~~~p~W--s~~~  426 (428)
T PRK01029        407 --TRKIVIGSGEKRFPSW--GAFP  426 (428)
T ss_pred             --EEEeecCCCcccCcee--cCCC
Confidence              2233333455678889  7754

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.61  E-value=4.2e-13  Score=116.41  Aligned_cols=205  Identities=12%  Similarity=0.028  Sum_probs=133.8

Q ss_pred             CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--C--CcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--L--SEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      ..|.++|...... +.+..+..     .+...+|+|||++|+...  +  ..|.+||+.+ ++...     ...+...+.
T Consensus       170 ~~l~~~d~~g~~~-~~l~~~~~-----~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~~~-----~~~~~~~~~  237 (417)
T TIGR02800       170 YELQVADYDGANP-QTITRSRE-----PILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-GQREK-----VASFPGMNG  237 (417)
T ss_pred             ceEEEEcCCCCCC-EEeecCCC-----ceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-CCEEE-----eecCCCCcc
Confidence            3578888754433 33433232     578899999999998654  2  4799999986 33322     233445566


Q ss_pred             EEEEcCCCCcEEE-EeecCC--eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC--eEEEEEccCCCcc
Q psy2305         163 AIAINPVHPDICA-LGTYSK--IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC--EIICWDLRNPGCI  237 (334)
Q Consensus       163 ~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~iwd~~~~~~~  237 (334)
                      +++|+|+|+ .|+ +.+.++  .|++||+.+++. ..+..+........|+|+|+.|+..+..++  .|+++|+.. ++ 
T Consensus       238 ~~~~spDg~-~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-  313 (417)
T TIGR02800       238 APAFSPDGS-KLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-  313 (417)
T ss_pred             ceEECCCCC-EEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-
Confidence            789999998 554 444444  588999887654 344445555567899999998877662233  577777765 33 


Q ss_pred             ceeecccccCCceEEEEecCCCceEEeeecCC---cEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCC
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG---DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                      ...+...  ........|+|+|++++.++.++   .|.+||+.++.             ...+... .......|  +|+
T Consensus       314 ~~~l~~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~-------------~~~l~~~-~~~~~p~~--spd  375 (417)
T TIGR02800       314 VRRLTFR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG-------------ERVLTDT-GLDESPSF--APN  375 (417)
T ss_pred             EEEeecC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC-------------eEEccCC-CCCCCceE--CCC
Confidence            2333322  33445678999999999887765   78899988752             1222221 23456789  999


Q ss_pred             cccceeeEEeeecce
Q psy2305         315 ERDLLVADATCSGQI  329 (334)
Q Consensus       315 ~~~~~~~l~t~~~d~  329 (334)
                      +    ++|+..+.++
T Consensus       376 g----~~l~~~~~~~  386 (417)
T TIGR02800       376 G----RMILYATTRG  386 (417)
T ss_pred             C----CEEEEEEeCC
Confidence            9    8887776654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974|consensus

Probab=99.61  E-value=4.5e-14  Score=124.93  Aligned_cols=192  Identities=13%  Similarity=0.142  Sum_probs=152.7

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccc
Q psy2305          75 GFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        75 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      -+...++.+..++.+.+||...+.....++.....--. ...-+-++++.-++++|+ -+.|.+|+......+.     .
T Consensus        97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~-~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-----~  170 (967)
T KOG0974|consen   97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLY-SSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-----R  170 (967)
T ss_pred             hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEE-eEEEEeccCcEEEEEeccccccEEEEeccccCCcc-----e
Confidence            35567888888889999999887776666543221000 122334566666788887 8999999988422222     4


Q ss_pred             ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE-eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         154 PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF-FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      +.+|++.+.++.++-+|+ ++++.++|+++++|++++.+... ..-+|+..+..+.|.|+  .+++++ .|-+.++|+.+
T Consensus       171 l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g-edctcrvW~~~  246 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG-EDCTCRVWGVN  246 (967)
T ss_pred             ecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec-cceEEEEEecc
Confidence            789999999999999999 99999999999999999987766 66789999999999999  899999 99999999776


Q ss_pred             CCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         233 NPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                        +..+..+..|. ...+..++..++...+++++.|+.+++|++...
T Consensus       247 --~~~l~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  247 --GTQLEVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             --cceehhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence              55566777773 456778888999999999999999999998764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.60  E-value=6.3e-12  Score=103.22  Aligned_cols=243  Identities=12%  Similarity=0.061  Sum_probs=148.0

Q ss_pred             EcCCCcEEEEeeC----------CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc
Q psy2305           9 EAPDGTCLLTNSN----------DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         9 ~sp~~~~l~~~~~----------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      +||||+.|+++..          +..|.+||..+.+...              .+....... ...--.|..++++|||+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~--------------~i~~p~~p~-~~~~~~~~~~~ls~dgk  117 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA--------------DIELPEGPR-FLVGTYPWMTSLTPDNK  117 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe--------------EEccCCCch-hhccCccceEEECCCCC
Confidence            8999998877654          7899999999998763              222111100 00111223466799999


Q ss_pred             EEEEee-C-CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccc
Q psy2305          79 YFLCSS-M-YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        79 ~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +|++.. . +..|.+.|+.+++.+..+....      ...-+.. ++..+++-+.||......+...++........+..
T Consensus       118 ~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~------~~~vy~t-~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~  190 (352)
T TIGR02658       118 TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD------CYHIFPT-ANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHP  190 (352)
T ss_pred             EEEEecCCCCCEEEEEECCCCcEEEEEeCCC------CcEEEEe-cCCccEEEeecCceEEEEecCCCceEEeeeeeecC
Confidence            988776 3 6899999999999998887532      1222222 22333333345555544444433322110000111


Q ss_pred             cccceE-EEEEcC-CCCcEEEEeecCCeEEEEECCCC-----CceEeecc-------CCCCeEEEEEccCCcEEEeee-c
Q psy2305         157 RKNIVS-AIAINP-VHPDICALGTYSKIIGLFSDSDG-----RPLFFLKG-------HNGGITHLEFSSNGILLFSGA-R  221 (334)
Q Consensus       157 ~~~~v~-~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~-~  221 (334)
                      ...++. .-.|.+ +|+ ++.+..+ |+|.+.|+...     +....+..       ..+.+.-++++|+++.+++.. .
T Consensus       191 ~~~~v~~rP~~~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~  268 (352)
T TIGR02658       191 EDEYLINHPAYSNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ  268 (352)
T ss_pred             CccccccCCceEcCCCc-EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence            000000 004455 777 6665555 99999996432     22222211       233445599999999888843 0


Q ss_pred             --------CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCc-eEEeee-cCCcEEEEeCCCC
Q psy2305         222 --------KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSGN-TNGDLSIWNVNTS  279 (334)
Q Consensus       222 --------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~  279 (334)
                              ..+.|.++|..+ .+.+..+.-   ...+..++++||++ +|++.. .++.|.++|..++
T Consensus       269 ~~~~thk~~~~~V~ViD~~t-~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       269 RAKWTHKTASRFLFVVDAKT-GKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             CccccccCCCCEEEEEECCC-CeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence                    225799999987 666666653   45677899999999 777665 5788999999998

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0974|consensus

Probab=99.60  E-value=1.6e-13  Score=121.59  Aligned_cols=190  Identities=14%  Similarity=0.063  Sum_probs=142.5

Q ss_pred             ceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc-c---ceEEEEEcCCCCcEEEEeecCCeEEEEEC
Q psy2305         114 HAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK-N---IVSAIAINPVHPDICALGTYSKIIGLFSD  188 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~-~---~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  188 (334)
                      .+....+..+.+.++.+. ++.+.+||... +.....    ..... .   ...-+.++++.- ++++|+.-+.|.+|+.
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~-~~~~~~----i~~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~  162 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKN-SSVLSK----IQSDERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKP  162 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEeccc-Cceehh----cCCCceEEEEeEEEEeccCcEE-EEEeccccccEEEEec
Confidence            344455566667777665 89999999885 333322    11111 1   112233455554 8999999999999998


Q ss_pred             CCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC
Q psy2305         189 SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN  268 (334)
Q Consensus       189 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  268 (334)
                      ...+.-..+.+|.+.|.++.|+-||+++++.+ +|.++++|++.+........-+  +...++++.|.|+  .+++++.|
T Consensus       163 ~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~S-dDRsiRlW~i~s~~~~~~~~fg--HsaRvw~~~~~~n--~i~t~ged  237 (967)
T KOG0974|consen  163 HEDNKPIRLKGHEGSIFSIVTSLDGRYIASVS-DDRSIRLWPIDSREVLGCTGFG--HSARVWACCFLPN--RIITVGED  237 (967)
T ss_pred             cccCCcceecccCCceEEEEEccCCcEEEEEe-cCcceeeeecccccccCccccc--ccceeEEEEeccc--eeEEeccc
Confidence            74444446899999999999999999999999 9999999999983332223333  4778889999998  99999999


Q ss_pred             CcEEEEeCCCCCCCCCCCccccccccceeccccc-ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         269 GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD-CTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       269 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      -+.++|+.+.             ..+..+.+|.+ .|+.++.  .++.    ..++|++.|+.++.
T Consensus       238 ctcrvW~~~~-------------~~l~~y~~h~g~~iw~~~~--~~~~----~~~vT~g~Ds~lk~  284 (967)
T KOG0974|consen  238 CTCRVWGVNG-------------TQLEVYDEHSGKGIWKIAV--PIGV----IIKVTGGNDSTLKL  284 (967)
T ss_pred             eEEEEEeccc-------------ceehhhhhhhhcceeEEEE--cCCc----eEEEeeccCcchhh
Confidence            9999997776             34557777765 7899999  8888    89999999998864

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=6e-13  Score=115.34  Aligned_cols=213  Identities=11%  Similarity=-0.023  Sum_probs=126.5

Q ss_pred             ceeEEEEcCCCcEEEEeeCC---CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           3 IEEDVDEAPDGTCLLTNSND---NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      .+.+..|||||+.|+..+.+   ..|++||+.+++..               .+... .+......       |+|||+.
T Consensus       219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---------------~lt~~-~g~~~~~~-------wSPDG~~  275 (448)
T PRK04792        219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---------------KVTSF-PGINGAPR-------FSPDGKK  275 (448)
T ss_pred             cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE---------------EecCC-CCCcCCee-------ECCCCCE
Confidence            45688999999998876532   36888898877643               11111 11222334       4889998


Q ss_pred             EEE-eeCCCc--EEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCc--EEEEEcCCCCCeeeeecc
Q psy2305          80 FLC-SSMYAP--IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSE--VKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        80 l~~-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~--i~i~d~~~~~~~~~~~~~  152 (334)
                      |+. .+.++.  |.++|+.+++... +..+..     .....+|+|||+.|+..+  ++.  |.++|+.. ++ ....  
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~-----~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~L--  345 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTR-ITRHRA-----IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSRL--  345 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEE-CccCCC-----CccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEE--
Confidence            765 455664  7778988776543 332221     456789999999888554  444  55556653 33 2211  


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeec-CC--eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCe--EE
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTY-SK--IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCE--II  227 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~--i~  227 (334)
                      ...+  ......+|+|+|+ .|+..+. ++  .|.++|+.+++.. .+... .......|+|+|+.|+..+..++.  ++
T Consensus       346 t~~g--~~~~~~~~SpDG~-~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~  420 (448)
T PRK04792        346 TFEG--EQNLGGSITPDGR-SMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLA  420 (448)
T ss_pred             ecCC--CCCcCeeECCCCC-EEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEE
Confidence            1222  2234578999999 6665544 34  4666788777543 33322 122346899999988876633443  66


Q ss_pred             EEEccCCCccceeecccccCCceEEEEecC
Q psy2305         228 CWDLRNPGCILHTFPRQVSTNQRVYFDLTS  257 (334)
Q Consensus       228 iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~  257 (334)
                      +++..  +.....+...  ...+...+|+|
T Consensus       421 ~~~~~--G~~~~~l~~~--~g~~~~p~Wsp  446 (448)
T PRK04792        421 AVSID--GRFKARLPAG--QGEVKSPAWSP  446 (448)
T ss_pred             EEECC--CCceEECcCC--CCCcCCCccCC
Confidence            66664  5555555432  23344456766

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=9.2e-13  Score=114.44  Aligned_cols=213  Identities=12%  Similarity=0.038  Sum_probs=128.4

Q ss_pred             ceeEEEEcCCCcEEEEeeCC---CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           3 IEEDVDEAPDGTCLLTNSND---NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      .+...+|||||++|+..+.+   ..|.+|++.+++..               .+.. ..+.+....|       +|||+.
T Consensus       200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~---------------~l~~-~~g~~~~~~~-------SpDG~~  256 (430)
T PRK00178        200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE---------------QITN-FEGLNGAPAW-------SPDGSK  256 (430)
T ss_pred             ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE---------------EccC-CCCCcCCeEE-------CCCCCE
Confidence            46788999999999876643   46899999887653               1111 1122223444       889988


Q ss_pred             EEE-eeCCC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CC--cEEEEEcCCCCCeeeeecc
Q psy2305          80 FLC-SSMYA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LS--EVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        80 l~~-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~  152 (334)
                      |+. .+.++  .|.+||+.+++... +.....     ......|+|||+.|+..+  ++  .|.++++.. ++ ....  
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~-----~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~l--  326 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSR-VTNHPA-----IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AERV--  326 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEE-cccCCC-----CcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEe--
Confidence            774 44454  58888998876543 332221     345678999999887554  34  466667664 33 2211  


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeec-CC--eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC--eEE
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTY-SK--IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC--EII  227 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~  227 (334)
                      ...+  .......|+|+|+ .++.... ++  .|.++|+.+++. ..+.. ........|+|+|+.++..+..++  .+.
T Consensus       327 t~~~--~~~~~~~~Spdg~-~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~  401 (430)
T PRK00178        327 TFVG--NYNARPRLSADGK-TLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLM  401 (430)
T ss_pred             ecCC--CCccceEECCCCC-EEEEEEccCCceEEEEEECCCCCE-EEccC-CCCCCCceECCCCCEEEEEEecCCceEEE
Confidence            1111  2334578999999 6665543 33  588999987754 33332 222335689999999887763333  355


Q ss_pred             EEEccCCCccceeecccccCCceEEEEecC
Q psy2305         228 CWDLRNPGCILHTFPRQVSTNQRVYFDLTS  257 (334)
Q Consensus       228 iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~  257 (334)
                      ++++.  +.....+...  ...+...+|+|
T Consensus       402 ~~~~~--g~~~~~l~~~--~g~~~~p~ws~  427 (430)
T PRK00178        402 LVSIN--GRVRLPLPTA--QGEVREPSWSP  427 (430)
T ss_pred             EEECC--CCceEECcCC--CCCcCCCccCC
Confidence            56664  4434444322  23344455665

>KOG1240|consensus

Probab=99.59  E-value=8.2e-13  Score=119.06  Aligned_cols=199  Identities=18%  Similarity=0.206  Sum_probs=135.0

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCe-------eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCC-C
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGE-------IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRP-G  144 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~-~  144 (334)
                      ++.+.++++|+.||+|++|+...-.       ...++....     +.+.++...+.+..+|+++ ||.|++.+++.. .
T Consensus      1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~-----sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG-----SRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV 1132 (1431)
T ss_pred             CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC-----CceEEEEeccCCCeEEEEcCCCeEEEEEcccccc
Confidence            4566999999999999999986411       122222112     2789999999999999887 999999999851 1


Q ss_pred             Ce--eee-ecccccccccceEEEEEcCCCCc-EEEEeecCCeEEEEECCCCCceEeec--cCCCCeEEEEEccCCcEEEe
Q psy2305         145 RE--CVS-RNLKPWFRKNIVSAIAINPVHPD-ICALGTYSKIIGLFSDSDGRPLFFLK--GHNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       145 ~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~  218 (334)
                      ..  ... +.........-|..-++....+. .++.+...+.|..||++......+++  ...+.|++++.+|.+.+++.
T Consensus      1133 ~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1133 SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred             ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE
Confidence            11  000 00011122223333444443332 67788889999999998876555543  34578999999999999999


Q ss_pred             eecCCCeEEEEEccCCCccceeecccccCCceEEEEecC---CCceEEeee--cCCcEEEEeCCCCC
Q psy2305         219 GARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTS---CSNYLLSGN--TNGDLSIWNVNTSN  280 (334)
Q Consensus       219 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~~~--~dg~i~iwd~~~~~  280 (334)
                      |+ ..|.+.+||++- +.++...... ...++..+..+|   .....++++  ..+.|.+|++.++.
T Consensus      1213 Gt-s~G~l~lWDLRF-~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1213 GT-SRGQLVLWDLRF-RVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ec-CCceEEEEEeec-CceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            99 899999999996 6666655432 235555555544   334555544  46789999999884

>KOG1334|consensus

Probab=99.58  E-value=8.8e-14  Score=113.48  Aligned_cols=257  Identities=13%  Similarity=0.120  Sum_probs=180.0

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC--CCEEEEee-CC
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LS  133 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~  133 (334)
                      |.+.|+.+.|       ...|..|++++.|..|.+||...+.....+.. .|..   .|....|-|.  .+.+++++ ||
T Consensus       141 H~GcVntV~F-------N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-GH~~---NvfQaKFiP~s~d~ti~~~s~dg  209 (559)
T KOG1334|consen  141 HKGCVNTVHF-------NQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-GHCN---NVFQAKFIPFSGDRTIVTSSRDG  209 (559)
T ss_pred             CCCccceeee-------cccCceeeccCccceEEeehhhccCccccccc-cccc---chhhhhccCCCCCcCceeccccC
Confidence            4466766665       67899999999999999999998887766654 2332   5566667664  24566555 99


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee---ccCCC---CeEEE
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL---KGHNG---GITHL  207 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~---~i~~~  207 (334)
                      .+++=.+...+......  .+..|.++|..++.-|+..+.|.+++.|+.+.-+|++++.+...+   ..+..   ....+
T Consensus       210 qvr~s~i~~t~~~e~t~--rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I  287 (559)
T KOG1334|consen  210 QVRVSEILETGYVENTK--RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI  287 (559)
T ss_pred             ceeeeeeccccceecce--ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence            99998877544433221  467899999999999999989999999999999999887654443   22333   56788


Q ss_pred             EEccCCc-EEEeeecCCCeEEEEEccCCCcc-----ceeeccc----ccCCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305         208 EFSSNGI-LLFSGARKDCEIICWDLRNPGCI-----LHTFPRQ----VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN  277 (334)
Q Consensus       208 ~~~~~~~-~l~~~~~~d~~i~iwd~~~~~~~-----~~~~~~~----~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  277 (334)
                      +..|... .+++++ .|...++||.+...+.     +..+..+    .....|++++|+.++.-|.++-.|-.|++++-.
T Consensus       288 a~~P~nt~~faVgG-~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~  366 (559)
T KOG1334|consen  288 AVDPRNTNEFAVGG-SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS  366 (559)
T ss_pred             ecCCCCccccccCC-hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence            8888655 788888 8999999999852211     2222211    235678899999887777777778889999554


Q ss_pred             CCCCCCCCCcccc-cccc-ceeccccc--ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         278 TSNLPSSPYEESV-QEPL-YKFSAHQD--CTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       278 ~~~~~~~~~~~~~-~~~~-~~~~~~~~--~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+.. ..|+...+ .... +.+++|..  .|..+-|. -|..    .|+++||+=|.|.|
T Consensus       367 ~~~G-~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf-GPrs----EyVvSGSDCGhIFi  420 (559)
T KOG1334|consen  367 MGDG-SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFF-GPRS----EYVVSGSDCGHIFI  420 (559)
T ss_pred             cccC-CCCCCCcchhhccchhhcccccccccceeeec-cCcc----ceEEecCccceEEE
Confidence            4322 11221111 1122 23778865  67777762 6888    89999999888865

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.56  E-value=2.9e-13  Score=104.77  Aligned_cols=265  Identities=15%  Similarity=0.224  Sum_probs=171.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCce-----eeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHC-----KSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF   76 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~   76 (334)
                      |.|+++.|...|.||++|...|.|.+|.-....-.     ..+...+   ++....-...-...|..+.|.-     ...
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe---~EFDYLkSleieEKin~I~w~~-----~t~   98 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHE---LEFDYLKSLEIEEKINAIEWFD-----DTG   98 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccc---cchhhhhhccHHHHhhheeeec-----CCC
Confidence            56899999999999999999999999976543311     0011111   1111111111235688888843     112


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCeee---------------------------EEEcCcc-----------ccccccceeEE
Q psy2305          77 TSYFLCSSMYAPIHLWDSVGGEIK---------------------------ATYRPYN-----------QVDEVTHAYSL  118 (334)
Q Consensus        77 ~~~l~~~~~d~~i~iwd~~~~~~~---------------------------~~~~~~~-----------~~~~~~~v~~~  118 (334)
                      ...++..+.|.+|++|.+......                           ..+..|.           ...++--+.++
T Consensus        99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi  178 (460)
T COG5170          99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI  178 (460)
T ss_pred             cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence            335667778999999976432100                           0000000           00112256799


Q ss_pred             EEcCCCCEEEEeeCCcEEEEEcCCCCCeeeee---cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc--
Q psy2305         119 AFSLDGNKIYAGFLSEVKIFSTDRPGRECVSR---NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP--  193 (334)
Q Consensus       119 ~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--  193 (334)
                      .|+.|...++++.|-.|.+|+++.........   |..+..-..-|++..|+|...+.+.-.+..|.|++-|+++...  
T Consensus       179 S~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd  258 (460)
T COG5170         179 SFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD  258 (460)
T ss_pred             eecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence            99999999999999999999998644433221   1112223456889999998776888888999999999985321  


Q ss_pred             ----eEe----------eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccccc----------CCc
Q psy2305         194 ----LFF----------LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS----------TNQ  249 (334)
Q Consensus       194 ----~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~~~  249 (334)
                          +..          +.+-...|..+.|+++|+++++-.  --++++||.+....++.++.-|..          ...
T Consensus       259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd--yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa  336 (460)
T COG5170         259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD--YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA  336 (460)
T ss_pred             CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec--cceEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence                111          122235688899999999998765  679999999987888887753321          111


Q ss_pred             ---eEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305         250 ---RVYFDLTSCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       250 ---~~~~~~s~~~~~l~~~~~dg~i~iwd~  276 (334)
                         -..+.||.|.+.+.+|+..+..-+|-.
T Consensus       337 ifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         337 IFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             eeeeEEEEecCCcccccccccccceeeecc
Confidence               234678888888888887776666653

>KOG1064|consensus

Probab=99.55  E-value=5e-14  Score=130.91  Aligned_cols=195  Identities=15%  Similarity=0.211  Sum_probs=152.4

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.++.=+|...+.+||+.||.|++|.+..++.+              ..++......|..+.|       +.+|+.+.
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v--------------~~~rt~g~s~vtr~~f-------~~qGnk~~ 2267 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV--------------VCFRTAGNSRVTRSRF-------NHQGNKFG 2267 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeE--------------EEeeccCcchhhhhhh-------cccCCcee
Confidence            56788888898899999999999999999988766              3444444466766555       67899999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe---e-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG---F-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      .+..||.+.+|.+. .+.....+.|+.     ....+.|-.  ..++++   + ++.+.+||...++....    ....|
T Consensus      2268 i~d~dg~l~l~q~~-pk~~~s~qchnk-----~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~----v~~~H 2335 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQAS-PKPYTSWQCHNK-----ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL----VHTCH 2335 (2439)
T ss_pred             eeccCCceeecccC-CcceeccccCCc-----cccceeeee--hhhhccccCCCCCcccchhcccCcccce----eeeec
Confidence            99999999999975 455555565544     566777765  455543   2 68999999876544433    34789


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI  237 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~  237 (334)
                      .+.++++++.|..+ +|++|+.+|.|++||++..+.++.++.         +. ...++++++ ..|.|+||++... ..
T Consensus      2336 ~~gaT~l~~~P~~q-llisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s-s~g~ikIw~~s~~-~l 2402 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS-SEGNIKIWRLSEF-GL 2402 (2439)
T ss_pred             CCCceEEEEcCcce-EEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC-cccceEEEEcccc-ch
Confidence            99999999999999 999999999999999999888877764         44 566899999 8999999999873 45


Q ss_pred             ceeec
Q psy2305         238 LHTFP  242 (334)
Q Consensus       238 ~~~~~  242 (334)
                      +..+.
T Consensus      2403 l~~~p 2407 (2439)
T KOG1064|consen 2403 LHTFP 2407 (2439)
T ss_pred             hhcCc
Confidence            55554

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=5.5e-12  Score=108.52  Aligned_cols=206  Identities=12%  Similarity=0.112  Sum_probs=121.6

Q ss_pred             CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE---Eee-C--CcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY---AGF-L--SEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      ..|.+.|...+.. +.+.....     ...+-+|+|||+.++   +.. +  ..|.+.++.. +.. .    .+....+.
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~-----~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~-g~~-~----~lt~~~g~  232 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHS-----LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLEN-PAG-K----KILALQGN  232 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCC-----CcccceEccCCCceEEEEEEccCCCceEEEEECCC-CCc-e----EeecCCCC
Confidence            3577777754443 33333222     456779999997532   343 3  3577777775 322 2    12233444


Q ss_pred             eEEEEEcCCCCcEEEEee-cCC----eEEEEECCCC---CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEE--
Q psy2305         161 VSAIAINPVHPDICALGT-YSK----IIGLFSDSDG---RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD--  230 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~-~dg----~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd--  230 (334)
                      ....+|+|||+ .|+... .+|    .+..|++..+   +.......+.+.....+|+|||+.|+..+..++...+|.  
T Consensus       233 ~~~p~wSPDG~-~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        233 QLMPTFSPRKK-LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             ccceEECCCCC-EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence            55789999999 666543 223    3444777653   333333333334467899999998887663466555554  


Q ss_pred             ccCCCccceeecccccCCceEEEEecCCCceEEeeecC---CcEEEEeCCCCCCCCCCCccccccccceeccccccccee
Q psy2305         231 LRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN---GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV  307 (334)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  307 (334)
                      +...+.....+...  ........|||||+.|+..+.+   ..|.+||+.+++            . ..+......+...
T Consensus       312 ~~~~g~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~------------~-~~Lt~~~~~~~~p  376 (428)
T PRK01029        312 IDPEGQSPRLLTKK--YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR------------D-YQLTTSPENKESP  376 (428)
T ss_pred             CcccccceEEeccC--CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC------------e-EEccCCCCCccce
Confidence            43212223334332  2344567899999998876543   469999998873            2 2233223356789


Q ss_pred             eeccCCCcccceeeEEeee
Q psy2305         308 RWKHHKFERDLLVADATCS  326 (334)
Q Consensus       308 ~~~~s~~~~~~~~~l~t~~  326 (334)
                      .|  +|||    ++|+..+
T Consensus       377 ~w--SpDG----~~L~f~~  389 (428)
T PRK01029        377 SW--AIDS----LHLVYSA  389 (428)
T ss_pred             EE--CCCC----CEEEEEE
Confidence            99  9999    8776543

>KOG2315|consensus

Probab=99.55  E-value=5.7e-12  Score=104.85  Aligned_cols=236  Identities=15%  Similarity=0.212  Sum_probs=154.0

Q ss_pred             eEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE--
Q psy2305           5 EDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC--   82 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~--   82 (334)
                      ++..|++|..+.|-- ..+.+++|+....+..                ....+...|..+..+|     .|....+|+  
T Consensus       129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~----------------~~kl~~~~i~~f~lSp-----gp~~~~vAvyv  186 (566)
T KOG2315|consen  129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTI----------------QHKLSVSGITMLSLSP-----GPEPPFVAVYV  186 (566)
T ss_pred             cccccccchhhhhhh-hcceEEEEecCCccce----------------eeeeeccceeeEEecC-----CCCCceEEEEc
Confidence            577888887654432 3467999999875543                2223456677777755     344445554  


Q ss_pred             ---eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE--E-ee-CC---------cEEEEEcCCCCCe
Q psy2305          83 ---SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY--A-GF-LS---------EVKIFSTDRPGRE  146 (334)
Q Consensus        83 ---~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~-~~-d~---------~i~i~d~~~~~~~  146 (334)
                         .+.-..|+||.......-..+........  .=..+.|++-|.-|+  + .. |.         ++++++++  +..
T Consensus       187 Pe~kGaPa~vri~~~~~~~~~~~~a~ksFFka--dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~--g~s  262 (566)
T KOG2315|consen  187 PEKKGAPASVRIYKYPEEGQHQPVANKSFFKA--DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ--GES  262 (566)
T ss_pred             cCCCCCCcEEEEeccccccccchhhhcccccc--ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec--Cce
Confidence               24456899998753222111111000000  224788998876443  2 22 43         57777776  444


Q ss_pred             eeeecccccccccceEEEEEcCCCCcEEEE--eecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec--C
Q psy2305         147 CVSRNLKPWFRKNIVSAIAINPVHPDICAL--GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR--K  222 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~  222 (334)
                      ..    ..-...++|.++.|+|+++ .+++  |-+--.+.|||++ ++++..+.  .++=.++-|+|.|++|+.++-  .
T Consensus       263 ~~----V~L~k~GPVhdv~W~~s~~-EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL  334 (566)
T KOG2315|consen  263 VS----VPLLKEGPVHDVTWSPSGR-EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNL  334 (566)
T ss_pred             EE----EecCCCCCceEEEECCCCC-EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCC
Confidence            33    1233478999999999998 5544  4556789999985 66766664  456678999999999887761  3


Q ss_pred             CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeec------CCcEEEEeCCCC
Q psy2305         223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT------NGDLSIWNVNTS  279 (334)
Q Consensus       223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~  279 (334)
                      .|.|.+||..+ .+.+..+...    ..+-+.|+|||++++++..      |+.++||++...
T Consensus       335 ~G~mEvwDv~n-~K~i~~~~a~----~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  335 PGDMEVWDVPN-RKLIAKFKAA----NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             CCceEEEeccc-hhhccccccC----CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            47899999998 6666666532    3345789999999998864      788999998774

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.55  E-value=1e-11  Score=102.33  Aligned_cols=276  Identities=16%  Similarity=0.162  Sum_probs=175.2

Q ss_pred             ceeEEEEcCCCcEEEEeeCC---------------CeEEEEECCCCCceeeeeCCCCC--CCCcc--------------e
Q psy2305           3 IEEDVDEAPDGTCLLTNSND---------------NHLRTFDLPSELHCKSVWRPSNQ--RPKLN--------------Y   51 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d---------------~~v~iw~~~~~~~~~~~~~~~~~--~~~~~--------------~   51 (334)
                      -|..+.|||.++||.+=+..               +.+.+||..++.....+......  .+...              .
T Consensus        73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~  152 (561)
T COG5354          73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS  152 (561)
T ss_pred             CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence            47889999999999985543               35999999999887655443322  11000              0


Q ss_pred             eeeeee--------------ceeEEEEEEecccceecCCCcEEEE-----eeCCCcEEEEeCCCCeeeEEEcCccccccc
Q psy2305          52 TLKIKE--------------GGIIYDYVWYPKTSSIDGFTSYFLC-----SSMYAPIHLWDSVGGEIKATYRPYNQVDEV  112 (334)
Q Consensus        52 ~~~~~~--------------~~~v~~~~~~~~~~~~s~~~~~l~~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  112 (334)
                      .+..++              ...+....|+|.     .++..|+.     .+..+.+++|.+..+..+.+-....-    
T Consensus       153 sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~-----~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~----  223 (561)
T COG5354         153 SLYIHEITDNIEEHPFKNLRPVGILDFSISPE-----GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV----  223 (561)
T ss_pred             eEEEEecCCccccCchhhccccceeeEEecCC-----CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee----
Confidence            111111              122334444331     12333443     34567889998876665544332222    


Q ss_pred             cceeEEEEcCCCCEEEEe------e------CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEE--ee
Q psy2305         113 THAYSLAFSLDGNKIYAG------F------LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICAL--GT  178 (334)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~------~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~  178 (334)
                       .=..+.|.+.|++|++-      +      ...+.++++.  ++.+..    .....++|..++|.|.++ .+++  |-
T Consensus       224 -~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~--e~~i~V----~~~~~~pVhdf~W~p~S~-~F~vi~g~  295 (561)
T COG5354         224 -SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT--ERSIPV----EKDLKDPVHDFTWEPLSS-RFAVISGY  295 (561)
T ss_pred             -cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec--ccccce----eccccccceeeeecccCC-ceeEEecc
Confidence             22578999999987631      1      2467888887  444432    225688999999999998 5544  35


Q ss_pred             cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC---CeEEEEEccCCCccceeecccccCCceEEEEe
Q psy2305         179 YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD---CEIICWDLRNPGCILHTFPRQVSTNQRVYFDL  255 (334)
Q Consensus       179 ~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  255 (334)
                      ..-.+.++|++.+ ....+  ....=..+.|+|.+++++.++ -|   |.+.+||..........+.+    .....+.|
T Consensus       296 ~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~ag-F~nl~gni~i~~~~~rf~~~~~~~~----~n~s~~~w  367 (561)
T COG5354         296 MPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAG-FDNLQGNIEIFDPAGRFKVAGAFNG----LNTSYCDW  367 (561)
T ss_pred             cccceeecccccc-eEEec--CCcccccccccCcccEEEEec-CCccccceEEeccCCceEEEEEeec----CCceEeec
Confidence            7888999999765 44333  334445688999999998866 44   67999998853333334432    23344679


Q ss_pred             cCCCceEEeee------cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecce
Q psy2305         256 TSCSNYLLSGN------TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQI  329 (334)
Q Consensus       256 s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~  329 (334)
                      +|+++++.+..      .|..+.|||+...             ...       ..+.+.|  .|.+    ++..+.|.+.
T Consensus       368 spd~qF~~~~~ts~k~~~Dn~i~l~~v~g~-------------~~f-------el~~~~W--~p~~----~~~ttsSs~~  421 (561)
T COG5354         368 SPDGQFYDTDTTSEKLRVDNSIKLWDVYGA-------------KVF-------ELTNITW--DPSG----QYVTTSSSCP  421 (561)
T ss_pred             cCCceEEEecCCCcccccCcceEEEEecCc-------------hhh-------hhhhccc--cCCc----ccceeeccCC
Confidence            99999988763      3788999999885             221       4566778  7777    6666665544

>KOG4547|consensus

Probab=99.54  E-value=1.9e-12  Score=108.27  Aligned_cols=192  Identities=15%  Similarity=0.204  Sum_probs=149.8

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEc------C--------------CCCEEEEee-CC
Q psy2305          75 GFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS------L--------------DGNKIYAGF-LS  133 (334)
Q Consensus        75 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~--------------~~~~l~~~~-d~  133 (334)
                      |...++|....||.+++|+...++....|....+...  ..++..|.      |              |...++-|. .|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~--t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g   80 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG--TCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG   80 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccC--cceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence            4567899999999999999999998888876544332  23344432      2              223555565 89


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG  213 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  213 (334)
                      .|.+|++.. ++.....  ....|.+.|.++.++.+-. .|.+++.|..+..|+....+.++.+......+.+++.+|||
T Consensus        81 ~v~~ys~~~-g~it~~~--st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~  156 (541)
T KOG4547|consen   81 SVLLYSVAG-GEITAKL--STDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG  156 (541)
T ss_pred             cEEEEEecC-CeEEEEE--ecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence            999999985 3333221  3467999999999999988 99999999999999999999999999888899999999999


Q ss_pred             cEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCC-----CceEEee-ecCCcEEEEeCCC
Q psy2305         214 ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC-----SNYLLSG-NTNGDLSIWNVNT  278 (334)
Q Consensus       214 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~~~l~~~-~~dg~i~iwd~~~  278 (334)
                      +.|++++   +.|++||+.+ ++.+..|.+|  ...+.+++|-.+     |.++.++ ..+.-+.+|-+..
T Consensus       157 ~~l~~as---~~ik~~~~~~-kevv~~ftgh--~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  157 KILLTAS---RQIKVLDIET-KEVVITFTGH--GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CEEEecc---ceEEEEEccC-ceEEEEecCC--CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            9999887   5899999998 8889999998  566777766655     6666654 4455677886655

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.52  E-value=1.2e-10  Score=95.81  Aligned_cols=266  Identities=11%  Similarity=0.030  Sum_probs=156.4

Q ss_pred             CCcEEEEeeCC-----CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC-
Q psy2305          12 DGTCLLTNSND-----NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM-   85 (334)
Q Consensus        12 ~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~-   85 (334)
                      ++..+++....     ++|.+.|..+.+..              ..+..+         +.|+.+ +|||++.|+++.. 
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~--------------g~i~~G---------~~P~~~-~spDg~~lyva~~~   66 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVL--------------GMTDGG---------FLPNPV-VASDGSFFAHASTV   66 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEE--------------EEEEcc---------CCCcee-ECCCCCEEEEEecc
Confidence            45555554332     89999999998765              233322         234443 6899998877654 


Q ss_pred             ---------CCcEEEEeCCCCeeeEEEcCccccc--cccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeeeeec
Q psy2305          86 ---------YAPIHLWDSVGGEIKATYRPYNQVD--EVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        86 ---------d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~  151 (334)
                               +..|.+||.++++.+..+.......  .......++++|||++|++..   +..|.+.|+.+ ++.+...+
T Consensus        67 ~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~  145 (352)
T TIGR02658        67 YSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMD  145 (352)
T ss_pred             ccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC-CcEEEEEe
Confidence                     6789999999999998887532100  011345899999999999764   79999999997 55555432


Q ss_pred             ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCce-E---eeccCCCCe-EEEEEcc-CCcEEEeeecCCC
Q psy2305         152 LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRPL-F---FLKGHNGGI-THLEFSS-NGILLFSGARKDC  224 (334)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~-~---~~~~~~~~i-~~~~~~~-~~~~l~~~~~~d~  224 (334)
                      .     .....-+..+++..  + .-+.||......+.+ ++.. .   .+.....++ ..-.|.+ +|+++++.. + |
T Consensus       146 v-----p~~~~vy~t~e~~~--~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-e-G  215 (352)
T TIGR02658       146 V-----PDCYHIFPTANDTF--F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-T-G  215 (352)
T ss_pred             C-----CCCcEEEEecCCcc--E-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-C-C
Confidence            1     11111222222221  1 123344444433322 2211 0   111100000 0014455 888888877 4 9


Q ss_pred             eEEEEEccCCC----ccceeeccc-----ccCCceEEEEecCCCceEEeeec----------CCcEEEEeCCCCCCCCCC
Q psy2305         225 EIICWDLRNPG----CILHTFPRQ-----VSTNQRVYFDLTSCSNYLLSGNT----------NGDLSIWNVNTSNLPSSP  285 (334)
Q Consensus       225 ~i~iwd~~~~~----~~~~~~~~~-----~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~  285 (334)
                      .|.+.|+....    .....+...     .......-++++|+++.+++...          .+.|.++|..++      
T Consensus       216 ~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~------  289 (352)
T TIGR02658       216 KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG------  289 (352)
T ss_pred             eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC------
Confidence            99999975421    112222111     11222223889999998887431          257999999997      


Q ss_pred             CccccccccceecccccccceeeeccCCCccccee-eEEeee-cceee
Q psy2305         286 YEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV-ADATCS-GQITN  331 (334)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~-~l~t~~-~d~~i  331 (334)
                            +.+..+.. ...+..+++  +||+    + +|++.. .++.+
T Consensus       290 ------kvi~~i~v-G~~~~~iav--S~Dg----kp~lyvtn~~s~~V  324 (352)
T TIGR02658       290 ------KRLRKIEL-GHEIDSINV--SQDA----KPLLYALSTGDKTL  324 (352)
T ss_pred             ------eEEEEEeC-CCceeeEEE--CCCC----CeEEEEeCCCCCcE
Confidence                  56665553 346889999  9999    8 777665 45544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0280|consensus

Probab=99.52  E-value=4.9e-12  Score=97.15  Aligned_cols=240  Identities=16%  Similarity=0.159  Sum_probs=150.8

Q ss_pred             CCc-EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEE
Q psy2305          12 DGT-CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIH   90 (334)
Q Consensus        12 ~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~   90 (334)
                      +|. .|+-+-.+|.|.+|........              ..+++-....+....  ..++.+++.+..++++-.+|.+.
T Consensus        83 ~g~~~l~~a~a~G~i~~~r~~~~~ss--------------~~L~~ls~~ki~~~~--~lslD~~~~~~~i~vs~s~G~~~  146 (339)
T KOG0280|consen   83 DGDFNLLDAHARGQIQLYRNDEDESS--------------VHLRGLSSKKISVVE--ALSLDISTSGTKIFVSDSRGSIS  146 (339)
T ss_pred             CccceeeeccccceEEEEeeccceee--------------eeecccchhhhhhee--eeEEEeeccCceEEEEcCCCcEE
Confidence            344 4455566788888876654433              122221111111110  01345577888899998999998


Q ss_pred             EEeCCCCeeeE--EEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEE
Q psy2305          91 LWDSVGGEIKA--TYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAI  166 (334)
Q Consensus        91 iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (334)
                      +-+........  ..+.|..     +++...|+.... .+++|+ |+.+..||++.++..+..   ....|...|.++.-
T Consensus       147 ~v~~t~~~le~vq~wk~He~-----E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~---n~kvH~~GV~SI~s  218 (339)
T KOG0280|consen  147 GVYETEMVLEKVQTWKVHEF-----EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH---NSKVHTSGVVSIYS  218 (339)
T ss_pred             EEecceeeeeecccccccce-----eeeeeecccCCCceEEecCCCceEEEEEecCCcceeee---cceeeecceEEEec
Confidence            66655554433  5666655     788999987654 556887 899999999976655554   46778999999999


Q ss_pred             cCCCCcEEEEeecCCeEEEEECCC-CCceEeeccCCCCeEEEEEccCCc-EEEeeecCCCeEEEEEccCCCcc----cee
Q psy2305         167 NPVHPDICALGTYSKIIGLFSDSD-GRPLFFLKGHNGGITHLEFSSNGI-LLFSGARKDCEIICWDLRNPGCI----LHT  240 (334)
Q Consensus       167 ~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~iwd~~~~~~~----~~~  240 (334)
                      +|..+.++++|+.|..|++||.++ ++++..-. -.+.|..+.++|.-. .|+.++ .-+-.+|-+.......    ...
T Consensus       219 s~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s  296 (339)
T KOG0280|consen  219 SPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDKVLEFQIVLPS  296 (339)
T ss_pred             CCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHH-HhcCceEEEecccccchheeeec
Confidence            988776999999999999999985 56655443 457899999999533 333333 4444667776642221    111


Q ss_pred             ecccccCCceEEEEecCCCceEEeee-cCCcEE-EEeCCCC
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLS-IWNVNTS  279 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~-iwd~~~~  279 (334)
                      .+.|  ..-...-+|.....+|++++ .|+.++ +|-.-++
T Consensus       297 ~~~h--dSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  297 DKIH--DSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             cccc--cceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            2222  22233334544445677765 366644 7755444

>KOG0309|consensus

Probab=99.50  E-value=5.4e-13  Score=114.36  Aligned_cols=296  Identities=16%  Similarity=0.142  Sum_probs=190.4

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .+.++..+|.|+-+|.+++-| +.+-|+...-..             ...+.....-.|-+..|+|     +|...+-++
T Consensus        26 ~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~p-------------pr~l~h~tpw~vad~qws~-----h~a~~~wiV   86 (1081)
T KOG0309|consen   26 GFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTP-------------PRWLHHITPWQVADVQWSP-----HPAKPYWIV   86 (1081)
T ss_pred             cccceeeccccchhhhhhhcC-eEEEeccCCCCC-------------ceeeeccCcchhcceeccc-----CCCCceeEE
Confidence            467788999999999998877 555577644321             0233322344577788877     556566666


Q ss_pred             eeCCCcEEEEeCCCCe-eeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          83 SSMYAPIHLWDSVGGE-IKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ......-.+|++.... ..-.|-.|+|..   .|+.+.|+|... .+++++ |-.+..||++.+...+..    ...-..
T Consensus        87 sts~qkaiiwnlA~ss~~aIef~lhghsr---aitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys----~~~w~s  159 (1081)
T KOG0309|consen   87 STSNQKAIIWNLAKSSSNAIEFVLHGHSR---AITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS----TSSWRS  159 (1081)
T ss_pred             ecCcchhhhhhhhcCCccceEEEEecCcc---ceeccccCCCCCcceeeccccccceeeeccCCCcceee----eecccc
Confidence            5556667789886432 223344444544   899999999875 455777 999999999987777663    444445


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccC-CcEEEeeecCCCeEEEEEccCCCcc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSN-GILLFSGARKDCEIICWDLRNPGCI  237 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~d~~i~iwd~~~~~~~  237 (334)
                      ....|+|+-... .+.+.+....|++||++.+ .++..+++|...|..++|..- ...+.+.+ .|++++.||.....+.
T Consensus       160 ~asqVkwnyk~p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~-~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  160 AASQVKWNYKDP-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS-NDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             cCceeeecccCc-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC-CCCceeeecccccccc
Confidence            667889998877 5555667889999999876 678888999999999998752 34677888 8999999999863332


Q ss_pred             ceeecccccCCceEEEEecCCCc--eEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCSN--YLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      ......  ....++.-.+-|-|.  ++.---.+..+.+++-+.....  ...-...+++..|.+|.+.|...-|  -..+
T Consensus       238 ~~~~vt--t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e--~n~~~~~~pVh~F~GH~D~V~eFlW--R~r~  311 (1081)
T KOG0309|consen  238 SKRTVT--TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE--WNVFDLNTPVHTFVGHDDVVLEFLW--RKRK  311 (1081)
T ss_pred             cceecc--ccCcceeccccccCceeEeccccCCeeeeeccccchhhh--hccccCCcceeeecCcchHHHHHhh--hhcc
Confidence            222211  133444445556443  2221111223444333221100  0000112789999999999988888  4332


Q ss_pred             c------cceeeEEeeecceeee
Q psy2305         316 R------DLLVADATCSGQITNV  332 (334)
Q Consensus       316 ~------~~~~~l~t~~~d~~i~  332 (334)
                      .      ...=.|+|-|.|.+++
T Consensus       312 e~~~d~d~rdfQLVTWSkD~~lr  334 (1081)
T KOG0309|consen  312 ECDGDYDSRDFQLVTWSKDQTLR  334 (1081)
T ss_pred             cccCCCCccceeEEEeecCCceE
Confidence            0      0001599999998875

>KOG1409|consensus

Probab=99.50  E-value=4.4e-12  Score=99.43  Aligned_cols=241  Identities=15%  Similarity=0.192  Sum_probs=155.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEEC-CCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDL-PSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      |.|+....-|-..-+++.+.|.++|||-- +.++.-              +.+......++.++.+       .++...|
T Consensus        25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w--------------psI~~~mP~~~~~~~y-------~~e~~~L   83 (404)
T KOG1409|consen   25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW--------------PSIYHYMPSPCSAMEY-------VSESRRL   83 (404)
T ss_pred             hhhhhheeccCCCCeEEccccceeeeEEeccccccC--------------chhhhhCCCCceEeee-------eccceEE
Confidence            34555556666667899999999999954 444432              1222223455666555       6688889


Q ss_pred             EEeeCCCcEEEEeCC----CCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccc
Q psy2305          81 LCSSMYAPIHLWDSV----GGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      +++-..|++.-+.+.    .....+....|..     .+..+-|+-...++++.+ |..+. |-....+..+-..     
T Consensus        84 ~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~-----~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y-----  152 (404)
T KOG1409|consen   84 YVGQDNGTVTEFALSEDFNKMTFLKDYLAHQA-----RVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGY-----  152 (404)
T ss_pred             EEEEecceEEEEEhhhhhhhcchhhhhhhhhc-----ceeeEEecCCceeEEEeccccceE-EEeeccCCcccce-----
Confidence            999999999888554    3333444444333     888999998888888777 65544 4433223322210     


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEEC--CCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSD--SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      ......+++.+.-.   +...|...|.|....+  ..-.++.++.+|.+.+++++|.|....|+++. .|..+.+||+-.
T Consensus       153 ~~~~~~t~~~~d~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~-~d~~vi~wdigg  228 (404)
T KOG1409|consen  153 NFETPASALQFDAL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA-SDHSVIMWDIGG  228 (404)
T ss_pred             EeeccCCCCceeeE---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc-ccCceEEEeccC
Confidence            00111111111111   3344555566555544  34467888999999999999999999999999 899999999975


Q ss_pred             CCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         234 PGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      .......+.+|  ...+..+..-+--+.+++++.||.|.+|+.+...
T Consensus       229 ~~g~~~el~gh--~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  229 RKGTAYELQGH--NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             Ccceeeeeccc--hhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            33334455555  3444445555666889999999999999987543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.50  E-value=1.7e-11  Score=100.95  Aligned_cols=240  Identities=14%  Similarity=0.111  Sum_probs=160.9

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      ++..++|||.|++|++....| |.+|.-......                .+..| ..|+.+.|       +|++++|.+
T Consensus        34 p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l----------------~~~~~-~~V~~~~f-------SP~~kYL~t   88 (561)
T COG5354          34 PVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKL----------------VRFRH-PDVKYLDF-------SPNEKYLVT   88 (561)
T ss_pred             chhheeecCcchheehhhccc-eEEccccchhhe----------------eeeec-CCceeccc-------Ccccceeee
Confidence            678899999999999887665 999987766532                22222 45666555       789999998


Q ss_pred             eeCC---------------CcEEEEeCCCCeeeEEEcCcccccccccee-EEEEcCCCCEEEEeeCCcEEEEEcCCCCCe
Q psy2305          83 SSMY---------------APIHLWDSVGGEIKATYRPYNQVDEVTHAY-SLAFSLDGNKIYAGFLSEVKIFSTDRPGRE  146 (334)
Q Consensus        83 ~~~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~  146 (334)
                      =++.               ..+.+||..+|..+..+.......   ..+ -+.|+-+.++++--....+.++++.  ...
T Consensus        89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~---~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t--~n~  163 (561)
T COG5354          89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY---LGWPVLKFSIDDKYVARVVGSSLYIHEIT--DNI  163 (561)
T ss_pred             eccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc---cccceeeeeecchhhhhhccCeEEEEecC--Ccc
Confidence            6543               358999999999999887755421   134 7889999888774455679999973  222


Q ss_pred             eeeecccccc-cccceEEEEEcCCCCc-EEEE-----eecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEee
Q psy2305         147 CVSRNLKPWF-RKNIVSAIAINPVHPD-ICAL-----GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSG  219 (334)
Q Consensus       147 ~~~~~~~~~~-~~~~v~~~~~~~~~~~-~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  219 (334)
                      ...   .+.. ....+....|+|.++. .|+.     .+..+.+++|.+..+..+.+-.-....=..+.|.+.|++|++-
T Consensus       164 ~~~---p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l  240 (561)
T COG5354         164 EEH---PFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVL  240 (561)
T ss_pred             ccC---chhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEE
Confidence            111   1111 1356888999998541 3332     4567899999998766555433222333478999999987653


Q ss_pred             ec----------CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee--cCCcEEEEeCCCC
Q psy2305         220 AR----------KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN--TNGDLSIWNVNTS  279 (334)
Q Consensus       220 ~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~  279 (334)
                      ..          .+..++|++++.  .-+....  .....|..++|+|.++.+++.+  .+-.+.++|++..
T Consensus       241 ~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         241 VMTHTKSNKSYFGESNLYLLRITE--RSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             EEEeeecccceeccceEEEEeecc--cccceec--cccccceeeeecccCCceeEEecccccceeecccccc
Confidence            20          135678888874  2222221  2356788899999988776554  5778899998874

>KOG1064|consensus

Probab=99.49  E-value=6.8e-13  Score=123.62  Aligned_cols=180  Identities=18%  Similarity=0.322  Sum_probs=143.1

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      +|...+.++|+.||.+++|....++.+..++..+.    ..|+.+.|+.+|+.+..+. ||.+.+|...  .+...    
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~----s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~~~---- 2286 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN----SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKPYT---- 2286 (2439)
T ss_pred             CCCCceEEecCCCceEEEEeccCCCeEEEeeccCc----chhhhhhhcccCCceeeeccCCceeecccC--Cccee----
Confidence            56777899999999999999988888877765443    2799999999999888775 9999999997  34443    


Q ss_pred             cccccccceEEEEEcCCCCcEEEEee---cCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEE
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGT---YSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIIC  228 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i  228 (334)
                      ..+.|....+.+.|-.  . .+++++   .++.+.+||..-. ..-..-+.|.+.++++++.|..+.|++|+ .+|.+++
T Consensus      2287 s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg-r~G~v~l 2362 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG-RKGEVCL 2362 (2439)
T ss_pred             ccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC-CcCcEEE
Confidence            5677888888888876  3 666654   5789999997432 21112278999999999999999999999 7999999


Q ss_pred             EEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         229 WDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       229 wd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      ||++. .+..+.+..           +. ...++++|+..|.++||++....
T Consensus      2363 ~D~rq-rql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2363 FDIRQ-RQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             eehHH-HHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccc
Confidence            99996 555555442           33 56789999999999999998863

>KOG1354|consensus

Probab=99.48  E-value=5e-12  Score=99.21  Aligned_cols=249  Identities=14%  Similarity=0.152  Sum_probs=158.8

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe-----eeEEEcCcccc-------ccccceeEEEEcCCC
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE-----IKATYRPYNQV-------DEVTHAYSLAFSLDG  124 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~-------~~~~~v~~~~~~~~~  124 (334)
                      +...|.++.|       ...|.+|++|..+|.|.++.-....     ....++.|...       .-...|..+.|.+++
T Consensus        24 eadiis~vef-------~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~   96 (433)
T KOG1354|consen   24 EADIISAVEF-------DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG   96 (433)
T ss_pred             hhcceeeEEe-------ecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC
Confidence            3455655555       7799999999999999999543211     22233332210       001267889999886


Q ss_pred             C---EEEEeeCCcEEEEEcCCCCCee----------------eeecc---------------cccccccceEEEEEcCCC
Q psy2305         125 N---KIYAGFLSEVKIFSTDRPGREC----------------VSRNL---------------KPWFRKNIVSAIAINPVH  170 (334)
Q Consensus       125 ~---~l~~~~d~~i~i~d~~~~~~~~----------------~~~~~---------------~~~~~~~~v~~~~~~~~~  170 (334)
                      +   +|+++.|.+|++|.+...+...                ...++               ....|.-.|+++.++.|+
T Consensus        97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~  176 (433)
T KOG1354|consen   97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK  176 (433)
T ss_pred             CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence            4   5556779999999987422211                00000               223577788999999999


Q ss_pred             CcEEEEeecCCeEEEEECCCCCc---eEeeccCC-----CCeEEEEEccCC-cEEEeeecCCCeEEEEEccCCCccc---
Q psy2305         171 PDICALGTYSKIIGLFSDSDGRP---LFFLKGHN-----GGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGCIL---  238 (334)
Q Consensus       171 ~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~-----~~i~~~~~~~~~-~~l~~~~~~d~~i~iwd~~~~~~~~---  238 (334)
                      . .++++ .|=.|.+|+++-...   +..++.+.     .-|++..|+|.. ..++..+ ..|+|++-|++...-+.   
T Consensus       177 E-t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS-SKGtIrLcDmR~~aLCd~hs  253 (433)
T KOG1354|consen  177 E-TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS-SKGTIRLCDMRQSALCDAHS  253 (433)
T ss_pred             c-eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec-CCCcEEEeechhhhhhcchh
Confidence            8 67655 678999999864322   22223332     358889999954 4555556 79999999999421110   


Q ss_pred             eeecccc----------cCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccc-------
Q psy2305         239 HTFPRQV----------STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ-------  301 (334)
Q Consensus       239 ~~~~~~~----------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------  301 (334)
                      +.+....          .-..+..+.|+++|+|+++-+. -+|++||+....           +++..+.-|.       
T Consensus       254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~-----------~pv~t~~vh~~lr~kLc  321 (433)
T KOG1354|consen  254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA-----------KPVETYPVHEYLRSKLC  321 (433)
T ss_pred             hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC-----------CcceEEeehHhHHHHHH
Confidence            1111100          0123567899999999998654 579999996543           4555554443       


Q ss_pred             -----ccc---ceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         302 -----DCT---NGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       302 -----~~i---~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                           +.|   ..++|  +-++    .+++|||....+.+
T Consensus       322 ~lYEnD~IfdKFec~~--sg~~----~~v~TGsy~n~frv  355 (433)
T KOG1354|consen  322 SLYENDAIFDKFECSW--SGND----SYVMTGSYNNVFRV  355 (433)
T ss_pred             HHhhccchhheeEEEE--cCCc----ceEecccccceEEE
Confidence                 223   34788  8888    89999998877654

>KOG1409|consensus

Probab=99.47  E-value=9.1e-12  Score=97.71  Aligned_cols=200  Identities=13%  Similarity=0.186  Sum_probs=139.9

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      +++++.+.++...|++|-..|++.-+.+...-...           ........|...+..+-|       +-....+++
T Consensus        70 ~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm-----------~~~r~~~~h~~~v~~~if-------~~~~e~V~s  131 (404)
T KOG1409|consen   70 PCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM-----------TFLKDYLAHQARVSAIVF-------SLTHEWVLS  131 (404)
T ss_pred             CceEeeeeccceEEEEEEecceEEEEEhhhhhhhc-----------chhhhhhhhhcceeeEEe-------cCCceeEEE
Confidence            57889999999999999999999888765322110           001222235567776666       445678888


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      .+.|..+.---.+.+..+..+....      ..+.+.+.-.  +.+.|. .|.|.+..+....-....   .+.+|.+.+
T Consensus       132 ~~~dk~~~~hc~e~~~~lg~Y~~~~------~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~---~~~~h~~~~  200 (404)
T KOG1409|consen  132 TGKDKQFAWHCTESGNRLGGYNFET------PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLIT---TFNGHTGEV  200 (404)
T ss_pred             eccccceEEEeeccCCcccceEeec------cCCCCceeeE--EEEecccccceEEEEEeecCCceEE---EEcCcccce
Confidence            8888877555555554433222111      1122222211  444555 677777776643433333   688999999


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      .++.|.|... ++.+|..|..+.+||+--. .....+.+|...|..+.+.+--+.|.+++ .||.|.+|+++.
T Consensus       201 ~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~-edg~i~~w~mn~  271 (404)
T KOG1409|consen  201 TCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG-EDGGIVVWNMNV  271 (404)
T ss_pred             EEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc-CCCeEEEEeccc
Confidence            9999999998 9999999999999999543 34566788999999999988888999999 899999999874

>KOG2321|consensus

Probab=99.46  E-value=1.6e-11  Score=102.56  Aligned_cols=216  Identities=13%  Similarity=0.106  Sum_probs=145.9

Q ss_pred             cceecCCCcEE-EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-EeeCCcEEEEEcCCCCCee
Q psy2305          70 TSSIDGFTSYF-LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGFLSEVKIFSTDRPGREC  147 (334)
Q Consensus        70 ~~~~s~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~i~d~~~~~~~~  147 (334)
                      .+..+|||+|+ ++|..--.|++||+....+  .|..|-...   .|.-.-++.|-..++ -..|.+|.+....  |...
T Consensus        56 ~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae---~V~feiLsDD~SK~v~L~~DR~IefHak~--G~hy  128 (703)
T KOG2321|consen   56 RIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAE---VVDFEILSDDYSKSVFLQNDRTIEFHAKY--GRHY  128 (703)
T ss_pred             eeEecCCCcEEEEecccCCceEEEEccccee--eeeeccccc---ceeEEEeccchhhheEeecCceeeehhhc--Ceee
Confidence            35568999985 5666788999999976543  233322222   444444555544343 3447777765543  3322


Q ss_pred             eeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEE
Q psy2305         148 VSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEII  227 (334)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~  227 (334)
                      ..      .-...-..++++.-.- -|++++....|+-++++.|.-+..+....+.++++..++...+|++|+ .+|.+.
T Consensus       129 ~~------RIP~~GRDm~y~~~sc-Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt-~~g~VE  200 (703)
T KOG2321|consen  129 RT------RIPKFGRDMKYHKPSC-DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT-EDGVVE  200 (703)
T ss_pred             ee------ecCcCCccccccCCCc-cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecc-cCceEE
Confidence            21      1112234556654333 355566677899999999999999988889999999999888999999 899999


Q ss_pred             EEEccCCCccceeeccc---------ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceec
Q psy2305         228 CWDLRNPGCILHTFPRQ---------VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS  298 (334)
Q Consensus       228 iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  298 (334)
                      .||.+. ...+..+...         .....++++.|+.+|-.+++|..+|.+.|||++..+           ..+..-.
T Consensus       201 fwDpR~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~-----------pl~~kdh  268 (703)
T KOG2321|consen  201 FWDPRD-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK-----------PLLVKDH  268 (703)
T ss_pred             Eecchh-hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-----------ceeeccc
Confidence            999997 4444443321         112348899999999999999999999999999973           1222222


Q ss_pred             ccccccceeeeccCCC
Q psy2305         299 AHQDCTNGVRWKHHKF  314 (334)
Q Consensus       299 ~~~~~i~~~~~~~s~~  314 (334)
                      +..-+|..+.|  .+.
T Consensus       269 ~~e~pi~~l~~--~~~  282 (703)
T KOG2321|consen  269 GYELPIKKLDW--QDT  282 (703)
T ss_pred             CCccceeeecc--ccc
Confidence            33447888888  655

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.43  E-value=5.5e-10  Score=105.84  Aligned_cols=261  Identities=11%  Similarity=0.089  Sum_probs=156.2

Q ss_pred             eEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeC-CCCCCCCcceeeeeeeceeEEE-EEEecccceecCCCcEEE
Q psy2305           5 EDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWR-PSNQRPKLNYTLKIKEGGIIYD-YVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         5 ~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~s~~~~~l~   81 (334)
                      ..++++++ |..+++-+.++.|++||....... .+.. .....          ..+.... .-..|..++++++++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~-~ig~~g~~G~----------~dG~~~~a~f~~P~GIavd~~gn~LY  639 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIV-QIGSTGEEGL----------RDGSFEDATFNRPQGLAYNAKKNLLY  639 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEE-EEccCCCcCC----------CCCchhccccCCCcEEEEeCCCCEEE
Confidence            46788875 556666678889999998654321 1110 00000          0011111 112366777888888666


Q ss_pred             Eee-CCCcEEEEeCCCCeeeEEEcCcccc------------ccccceeEEEEcCCCCEE-EEee-CCcEEEEEcCCCCCe
Q psy2305          82 CSS-MYAPIHLWDSVGGEIKATYRPYNQV------------DEVTHAYSLAFSLDGNKI-YAGF-LSEVKIFSTDRPGRE  146 (334)
Q Consensus        82 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l-~~~~-d~~i~i~d~~~~~~~  146 (334)
                      ++. ..+.|+++|+.++.. .++......            ......+.++++|++..+ ++.. ++.|++||... +..
T Consensus       640 VaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~-g~v  717 (1057)
T PLN02919        640 VADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD-GVT  717 (1057)
T ss_pred             EEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC-CeE
Confidence            654 456799999877643 333211000            001135689999955444 4444 78999999875 221


Q ss_pred             eeeec----ccccc------cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-------------cC---
Q psy2305         147 CVSRN----LKPWF------RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-------------GH---  200 (334)
Q Consensus       147 ~~~~~----~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~---  200 (334)
                      .....    ....+      .-.....++++|+++.++++...++.|++||+.++.......             ..   
T Consensus       718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~  797 (1057)
T PLN02919        718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV  797 (1057)
T ss_pred             EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence            11000    00000      113456799999998455556677999999998765321110             00   


Q ss_pred             -----CCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc------------cCCceEEEEecCCCceEE
Q psy2305         201 -----NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV------------STNQRVYFDLTSCSNYLL  263 (334)
Q Consensus       201 -----~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------~~~~~~~~~~s~~~~~l~  263 (334)
                           -....+++++++|+.+++-. .++.|++||..+ +... .+.+..            .-.....++++++|++++
T Consensus       798 g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~t-g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV  874 (1057)
T PLN02919        798 GSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPAT-KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV  874 (1057)
T ss_pred             hhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCC-CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence                 11235889999998777777 899999999975 3322 222210            012456788999999888


Q ss_pred             eeecCCcEEEEeCCCCCC
Q psy2305         264 SGNTNGDLSIWNVNTSNL  281 (334)
Q Consensus       264 ~~~~dg~i~iwd~~~~~~  281 (334)
                      +-+.++.|++||+.++..
T Consensus       875 aDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        875 ADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EECCCCEEEEEECCCCcc
Confidence            888899999999988754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=7.9e-10  Score=94.70  Aligned_cols=192  Identities=9%  Similarity=0.008  Sum_probs=118.5

Q ss_pred             eEEEEEEecccceecCCCcE-EEEeeCC---CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e---
Q psy2305          60 IIYDYVWYPKTSSIDGFTSY-FLCSSMY---APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F---  131 (334)
Q Consensus        60 ~v~~~~~~~~~~~~s~~~~~-l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~---  131 (334)
                      ......|       +|||+. ++..+.+   ..|.++|+.+++....... ..     ......|+|||+.|+.. +   
T Consensus       189 ~~~~p~w-------SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~g-----~~~~~~~SPDG~~la~~~~~~g  255 (419)
T PRK04043        189 LNIFPKW-------ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-QG-----MLVVSDVSKDGSKLLLTMAPKG  255 (419)
T ss_pred             CeEeEEE-------CCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-CC-----cEEeeEECCCCCEEEEEEccCC
Confidence            4555566       779984 5544433   4688899988876554432 21     45567899999888743 2   


Q ss_pred             CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee-cCC--eEEEEECCCCCceEeeccCCCCeEEEE
Q psy2305         132 LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT-YSK--IIGLFSDSDGRPLFFLKGHNGGITHLE  208 (334)
Q Consensus       132 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~  208 (334)
                      +..|.++|+.. + ...    .+..+........|+|||+ .|+..+ ..+  .|+++|+.+++..+.... ..  ....
T Consensus       256 ~~~Iy~~dl~~-g-~~~----~LT~~~~~d~~p~~SPDG~-~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~  325 (419)
T PRK04043        256 QPDIYLYDTNT-K-TLT----QITNYPGIDVNGNFVEDDK-RIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSS  325 (419)
T ss_pred             CcEEEEEECCC-C-cEE----EcccCCCccCccEECCCCC-EEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCce
Confidence            35677778764 3 333    2333333344568999999 555444 333  688888887765443321 11  1358


Q ss_pred             EccCCcEEEeeecCC--------CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC---CcEEEEeCC
Q psy2305         209 FSSNGILLFSGARKD--------CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN---GDLSIWNVN  277 (334)
Q Consensus       209 ~~~~~~~l~~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~  277 (334)
                      |+|+|++|+......        ..|.+.|+.. +. ...+....   ......|+|||+.++....+   ..+.+.++.
T Consensus       326 ~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~-~~~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        326 VSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY-IRRLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             ECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-eEECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence            999999988776322        3677888775 33 34444321   12246799999988766543   246677776


Q ss_pred             CC
Q psy2305         278 TS  279 (334)
Q Consensus       278 ~~  279 (334)
                      ..
T Consensus       401 g~  402 (419)
T PRK04043        401 YN  402 (419)
T ss_pred             CC
Confidence            63

>KOG4532|consensus

Probab=99.42  E-value=1.5e-10  Score=88.08  Aligned_cols=242  Identities=12%  Similarity=-0.056  Sum_probs=149.1

Q ss_pred             EEEEcC-----CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           6 DVDEAP-----DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         6 ~~~~sp-----~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      .+.|-|     .-.+||.|+..|...+|...+.+...              .+-..+...|.-..   +.   ....--+
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~--------------~~cd~snn~v~~~~---r~---cd~~~~~  131 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHL--------------YQCDVSNNDVTLVK---RY---CDLKFPL  131 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccce--------------eeecccccchhhhh---hh---cccccce
Confidence            355555     23479999999999999998766431              11111111111000   00   0011235


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ..++.|.++++.++..+..........-     .+.++++++|++++++.+ ...|..|.++..+..+...  .....+.
T Consensus       132 ~i~sndht~k~~~~~~~s~~~~~h~~~~-----~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~--~~a~t~D  204 (344)
T KOG4532|consen  132 NIASNDHTGKTMVVSGDSNKFAVHNQNL-----TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI--YEAPTSD  204 (344)
T ss_pred             eeccCCcceeEEEEecCcccceeecccc-----ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee--EecccCC
Confidence            6677888899888765543333222111     478999999999999766 6899999998755544431  2334445


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce-----EeeccCCCCeEEEEEccCCc--EEEeeecCCCeEEEEEcc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL-----FFLKGHNGGITHLEFSSNGI--LLFSGARKDCEIICWDLR  232 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~--~l~~~~~~d~~i~iwd~~  232 (334)
                      .-.+..|+.... .+|++..||++.|||++.....     .+-..|.+.++.+.|+|-|.  +|+..- .-+.+.+.|++
T Consensus       205 ~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE-hfs~~hv~D~R  282 (344)
T KOG4532|consen  205 HGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE-HFSRVHVVDTR  282 (344)
T ss_pred             CceeeeeccCcc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec-CcceEEEEEcc
Confidence            556888999988 9999999999999999875322     22245889999999998664  444444 67889999999


Q ss_pred             CCCccceeecccc------cCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         233 NPGCILHTFPRQV------STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       233 ~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      + ....+.+....      ....+..-.|+.++.-+.+.+++ .+.=|++.+
T Consensus       283 ~-~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s  332 (344)
T KOG4532|consen  283 N-YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS  332 (344)
T ss_pred             c-CceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence            8 33222222110      01123334455655555554443 344455544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.39  E-value=2.7e-09  Score=87.72  Aligned_cols=174  Identities=14%  Similarity=0.094  Sum_probs=124.6

Q ss_pred             EcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCC
Q psy2305           9 EAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYA   87 (334)
Q Consensus         9 ~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~   87 (334)
                      |++ +|.+++..++ |...|.+...+-.                 +...+.+.|.-...       ..+++-++.|..||
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-----------------iqv~~~~~VrY~r~-------~~~~e~~vigt~dg  381 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-----------------IQVGKKGGVRYRRI-------QVDPEGDVIGTNDG  381 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCee-----------------EEcCCCCceEEEEE-------ccCCcceEEeccCC
Confidence            444 6888888875 6677777655543                 23344444544433       44666788899998


Q ss_pred             -cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEE
Q psy2305          88 -PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIA  165 (334)
Q Consensus        88 -~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (334)
                       .+-|+|..+++..+......      .|.++..+++|++++++. ...+.+.|+++ +....    .-+...+-|+.+.
T Consensus       382 D~l~iyd~~~~e~kr~e~~lg------~I~av~vs~dGK~~vvaNdr~el~vididn-gnv~~----idkS~~~lItdf~  450 (668)
T COG4946         382 DKLGIYDKDGGEVKRIEKDLG------NIEAVKVSPDGKKVVVANDRFELWVIDIDN-GNVRL----IDKSEYGLITDFD  450 (668)
T ss_pred             ceEEEEecCCceEEEeeCCcc------ceEEEEEcCCCcEEEEEcCceEEEEEEecC-CCeeE----ecccccceeEEEE
Confidence             89999998877655544333      799999999999999887 68899999997 44332    2344567899999


Q ss_pred             EcCCCCcEEEEeecC----CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeee
Q psy2305         166 INPVHPDICALGTYS----KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       166 ~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  220 (334)
                      |+|+++ ++|-+--+    ..|++||+..++....-. ..+.=.+-+|.|++++|+.-+
T Consensus       451 ~~~nsr-~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         451 WHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EcCCce-eEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence            999999 99876544    479999998877554332 333445788999999887665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.37  E-value=2.4e-09  Score=82.70  Aligned_cols=204  Identities=13%  Similarity=0.103  Sum_probs=128.5

Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCCCC--eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCee
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSVGG--EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGREC  147 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~  147 (334)
                      ++.+.+|++||.- .|..|.|=..++.  ..+...+..  .+....=+.++||||+.+||.+. .|+|++||+.  +..+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVp--kD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~--g~~l   77 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVP--KDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM--GSEL   77 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecC--CCCCchheEEEECCCCcEEEEEcCCCeEEEEecc--ccee
Confidence            3457799888776 4667777655432  222333321  12222567899999999999886 8999999998  4444


Q ss_pred             eeecccc---cccccceEEEEEcCCC-----CcEEEEeecCCeEEEEECCC-----CCceEeec---cCCCCeEEEEEcc
Q psy2305         148 VSRNLKP---WFRKNIVSAIAINPVH-----PDICALGTYSKIIGLFSDSD-----GRPLFFLK---GHNGGITHLEFSS  211 (334)
Q Consensus       148 ~~~~~~~---~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~---~~~~~i~~~~~~~  211 (334)
                      ..++...   ..-...|.++.|.+..     ...|++-..+|.++=|-+..     .+...++.   .+...|.++.|+|
T Consensus        78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p  157 (282)
T PF15492_consen   78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP  157 (282)
T ss_pred             EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence            4322111   1123456677675432     12466667788887776532     22333332   2467899999999


Q ss_pred             CCcEEEeeecCCC----------eEEEEEccCCCcccee--------------------------ecc-cccCCceEEEE
Q psy2305         212 NGILLFSGARKDC----------EIICWDLRNPGCILHT--------------------------FPR-QVSTNQRVYFD  254 (334)
Q Consensus       212 ~~~~l~~~~~~d~----------~i~iwd~~~~~~~~~~--------------------------~~~-~~~~~~~~~~~  254 (334)
                      ..++|++|+.+..          -+.-|.+-+ +.+...                          +.. ......+..|.
T Consensus       158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS  236 (282)
T PF15492_consen  158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS  236 (282)
T ss_pred             CCCEEEEeccCCCCCccccccccCceEEEEcC-CCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence            9888887763222          256676543 111000                          000 11345677899


Q ss_pred             ecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         255 LTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       255 ~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      .||||..||+...+|.|.+|++.+-+
T Consensus       237 lSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  237 LSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             ECCCCCEEEEEEcCCeEEEEecCcch
Confidence            99999999999999999999999873

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.37  E-value=1.6e-09  Score=102.73  Aligned_cols=256  Identities=13%  Similarity=0.055  Sum_probs=152.6

Q ss_pred             cccceecCC-CcEEEEeeCCCcEEEEeCCCCeeeEEEcCcccc---------ccccceeEEEEcCCCCEEEEee--CCcE
Q psy2305          68 PKTSSIDGF-TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQV---------DEVTHAYSLAFSLDGNKIYAGF--LSEV  135 (334)
Q Consensus        68 ~~~~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~--d~~i  135 (334)
                      |..++++++ ++++++-+..+.|.++|.. +..+..+......         ........+++.++++.|+++.  .+.|
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            455777764 5667776778899999975 5544444321110         0112468999999988777654  5789


Q ss_pred             EEEEcCCCCCeeeeecc------cccc-------cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc---
Q psy2305         136 KIFSTDRPGRECVSRNL------KPWF-------RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG---  199 (334)
Q Consensus       136 ~i~d~~~~~~~~~~~~~------~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---  199 (334)
                      +.+|+.+  ..+....-      ...+       .-.....++++|++..++++...++.|++||..++... .+.+   
T Consensus       649 r~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~  725 (1057)
T PLN02919        649 REIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGY  725 (1057)
T ss_pred             EEEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCc
Confidence            9999874  22221100      0000       01234689999954427777778899999998766432 2211   


Q ss_pred             ------C------CCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccce------------eeccc------ccCCc
Q psy2305         200 ------H------NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH------------TFPRQ------VSTNQ  249 (334)
Q Consensus       200 ------~------~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~------------~~~~~------~~~~~  249 (334)
                            +      -.....++++|+++.|+++...++.|++||+.+.+....            .+...      .....
T Consensus       726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~  805 (1057)
T PLN02919        726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH  805 (1057)
T ss_pred             cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence                  0      123457999999986666654789999999986221110            00000      00112


Q ss_pred             eEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCC-ccccccccceecccccccceeeeccCCCcccceeeEEeeecc
Q psy2305         250 RVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPY-EESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQ  328 (334)
Q Consensus       250 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d  328 (334)
                      ...++++++|+++++-..+++|++||..++......- ......--....+.-.....+++  +++|    +++++.+.+
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav--d~dG----~lyVaDt~N  879 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL--GENG----RLFVADTNN  879 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE--eCCC----CEEEEECCC
Confidence            3568899999988888889999999998762210000 00000000001112235678999  9999    888888888


Q ss_pred             eeeee
Q psy2305         329 ITNVK  333 (334)
Q Consensus       329 ~~i~~  333 (334)
                      ++|.+
T Consensus       880 n~Irv  884 (1057)
T PLN02919        880 SLIRY  884 (1057)
T ss_pred             CEEEE
Confidence            87753

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1e-09  Score=94.04  Aligned_cols=189  Identities=13%  Similarity=0.015  Sum_probs=114.2

Q ss_pred             eeEEEEcCCCcE-EEEeeC---CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           4 EEDVDEAPDGTC-LLTNSN---DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         4 V~~~~~sp~~~~-l~~~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      .....|+|||+. ++..+.   +..|.++|+.+++..               .+.. ..+......|       +|||+.
T Consensus       190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------------~lt~-~~g~~~~~~~-------SPDG~~  246 (419)
T PRK04043        190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------------KIAS-SQGMLVVSDV-------SKDGSK  246 (419)
T ss_pred             eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---------------EEec-CCCcEEeeEE-------CCCCCE
Confidence            457899999985 554433   357899999888764               2222 2233334445       789987


Q ss_pred             EEEe-eCC--CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CC--cEEEEEcCCCCCeeeeecc
Q psy2305          80 FLCS-SMY--APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LS--EVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        80 l~~~-~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~  152 (334)
                      |+.. +.+  ..|.++|+.+++..+ +.....     ......|+|||+.|+..+  .+  .|.++|+.. +. ....  
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~-----~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~-~~rl--  316 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPG-----IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GS-VEQV--  316 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcEEE-cccCCC-----ccCccEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEeC--
Confidence            6654 333  468888987776443 332221     123557999999888554  33  577777764 33 2221  


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecC---------CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYS---------KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD  223 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d  223 (334)
                      ...+.  .  ...|+|+|+ .++.....         ..|.+.|+.+++. ..+... .......|+|||+.|+......
T Consensus       317 t~~g~--~--~~~~SPDG~-~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~  389 (419)
T PRK04043        317 VFHGK--N--NSSVSTYKN-YIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLG  389 (419)
T ss_pred             ccCCC--c--CceECCCCC-EEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccC
Confidence            12221  1  248999999 66554432         3788889887754 444433 2334689999999887766233


Q ss_pred             Ce--EEEEEcc
Q psy2305         224 CE--IICWDLR  232 (334)
Q Consensus       224 ~~--i~iwd~~  232 (334)
                      +.  +.+.++.
T Consensus       390 ~~~~L~~~~l~  400 (419)
T PRK04043        390 NQSALGIIRLN  400 (419)
T ss_pred             CcEEEEEEecC
Confidence            33  4455554

>KOG2314|consensus

Probab=99.35  E-value=5.7e-10  Score=93.19  Aligned_cols=245  Identities=13%  Similarity=0.147  Sum_probs=147.3

Q ss_pred             ceeEEEEcCCCcEEEEeeC-----------CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccc
Q psy2305           3 IEEDVDEAPDGTCLLTNSN-----------DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTS   71 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~-----------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   71 (334)
                      .|.-+.|||..+||+|-+.           ...+.|||+.+|....              .+......   .+.|  ...
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr--------------sF~~~~~~---~~~W--P~f  311 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR--------------SFPVIKSP---YLKW--PIF  311 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhc--------------ceeccCCC---cccc--ceE
Confidence            4778999999999998652           2579999999998763              22221111   1112  124


Q ss_pred             eecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee------CCcEEEEEcCCCCC
Q psy2305          72 SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF------LSEVKIFSTDRPGR  145 (334)
Q Consensus        72 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~i~d~~~~~~  145 (334)
                      .||.|++++|--..+ .|.||+..+..++.. +    .-.+..|....|+|.++.||-=.      -..+.+..+.+ .+
T Consensus       312 rWS~DdKy~Arm~~~-sisIyEtpsf~lld~-K----slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs-~~  384 (698)
T KOG2314|consen  312 RWSHDDKYFARMTGN-SISIYETPSFMLLDK-K----SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS-KR  384 (698)
T ss_pred             EeccCCceeEEeccc-eEEEEecCceeeecc-c----ccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc-cc
Confidence            458899999877654 689998765333211 1    11112677788888877777311      12333333322 11


Q ss_pred             eeeeecc------------------------------------------------cccccccceEEEEEcCCCCcEEEEe
Q psy2305         146 ECVSRNL------------------------------------------------KPWFRKNIVSAIAINPVHPDICALG  177 (334)
Q Consensus       146 ~~~~~~~------------------------------------------------~~~~~~~~v~~~~~~~~~~~~l~~~  177 (334)
                      .++...+                                                ..-.-+..|...+|-|.|+ .+++-
T Consensus       385 ~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gd-kF~vi  463 (698)
T KOG2314|consen  385 EIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGD-KFAVI  463 (698)
T ss_pred             eeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCC-eEEEE
Confidence            1111100                                                1112345677889999999 55543


Q ss_pred             e-c--CCeEEEEECCCC----CceEeeccCCCCeEEEEEccCCcEEEeeec--CCCeEEEEEccCCCccceeecccccCC
Q psy2305         178 T-Y--SKIIGLFSDSDG----RPLFFLKGHNGGITHLEFSSNGILLFSGAR--KDCEIICWDLRNPGCILHTFPRQVSTN  248 (334)
Q Consensus       178 ~-~--dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~  248 (334)
                      + .  ..++.+|.+++.    +.+..+..  ...+.+.|+|.|++++.++-  ..|.+.++|+.. ... ... ++....
T Consensus       464 ~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~-a~~-k~~-~~~eh~  538 (698)
T KOG2314|consen  464 SGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY-ADL-KDT-ASPEHF  538 (698)
T ss_pred             EccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecch-hhh-hhc-cCcccc
Confidence            2 2  357889988742    33444432  45678999999999887641  368899999874 111 111 111122


Q ss_pred             ceEEEEecCCCceEEeeec------CCcEEEEeCCCC
Q psy2305         249 QRVYFDLTSCSNYLLSGNT------NGDLSIWNVNTS  279 (334)
Q Consensus       249 ~~~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~  279 (334)
                      ....+.|.|.|+|+++++.      |.--+||+....
T Consensus       539 ~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr  575 (698)
T KOG2314|consen  539 AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR  575 (698)
T ss_pred             ccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence            3445789999999999875      445677877653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.35  E-value=3.6e-09  Score=90.52  Aligned_cols=287  Identities=12%  Similarity=0.059  Sum_probs=157.0

Q ss_pred             CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCC--C--CcceeeeeeeceeEEEEE-------Eec---ccceecC--
Q psy2305          12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQR--P--KLNYTLKIKEGGIIYDYV-------WYP---KTSSIDG--   75 (334)
Q Consensus        12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~v~~~~-------~~~---~~~~~s~--   75 (334)
                      .+.++++++.+|.|..+|..+++............  +  .-...+.....+.++++.       |..   ..+.-+|  
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v  143 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV  143 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE
Confidence            45567777777888888877777654332221100  0  000111111222333322       110   0000011  


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      .+..++.+..++.+..||.++|+.+..++............+.... + ..++.+. ++.+..+|..+ ++.........
T Consensus       144 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~t-G~~~W~~~~~~  220 (377)
T TIGR03300       144 ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQT-GQPLWEQRVAL  220 (377)
T ss_pred             ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccC-CCEeeeecccc
Confidence            2345667778999999999999988776543210000000111111 2 3555665 79999999886 55443211100


Q ss_pred             c-ccc--cc---e-EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEE
Q psy2305         155 W-FRK--NI---V-SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEII  227 (334)
Q Consensus       155 ~-~~~--~~---v-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~  227 (334)
                      . +..  ..   + ....+  .+. .+++++.+|.++.||.++++.+..... . ....+.  ..+..+++++ .+|.+.
T Consensus       221 ~~g~~~~~~~~~~~~~p~~--~~~-~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~--~~~~~vyv~~-~~G~l~  292 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVV--DGG-QVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPA--VDDNRLYVTD-ADGVVV  292 (377)
T ss_pred             CCCCCchhhhhccCCccEE--ECC-EEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCce--EeCCEEEEEC-CCCeEE
Confidence            0 000  00   0 11112  234 677788899999999999987766542 1 111222  2456788888 799999


Q ss_pred             EEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccccc-ce
Q psy2305         228 CWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCT-NG  306 (334)
Q Consensus       228 iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~  306 (334)
                      .+|..+ ++.+....... .........  .+..|++++.+|.|+++|..++            +.+..+..+...+ ..
T Consensus       293 ~~d~~t-G~~~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG------------~~~~~~~~~~~~~~~s  356 (377)
T TIGR03300       293 ALDRRS-GSELWKNDELK-YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG------------SFVARLKTDGSGIASP  356 (377)
T ss_pred             EEECCC-CcEEEcccccc-CCccccCEE--ECCEEEEEeCCCEEEEEECCCC------------CEEEEEEcCCCccccC
Confidence            999987 66554442211 111111111  3668888999999999999998            6666666555332 33


Q ss_pred             eeeccCCCcccceeeEEeeecceeeee
Q psy2305         307 VRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       307 ~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ..+   .++     .|+.++.||.++.
T Consensus       357 p~~---~~~-----~l~v~~~dG~l~~  375 (377)
T TIGR03300       357 PVV---VGD-----GLLVQTRDGDLYA  375 (377)
T ss_pred             CEE---ECC-----EEEEEeCCceEEE
Confidence            333   234     4888999998763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.34  E-value=1.9e-08  Score=80.63  Aligned_cols=215  Identities=15%  Similarity=0.149  Sum_probs=136.1

Q ss_pred             eecC-CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEc-CCCCEEEEeeCCcEEEEEcCCCCCeeee
Q psy2305          72 SIDG-FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS-LDGNKIYAGFLSEVKIFSTDRPGRECVS  149 (334)
Q Consensus        72 ~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~  149 (334)
                      .|.+ ++.++++--..+.|..|+..+++... +..  .     ....+++. +++. |+.+..+.+.++|+.+ ++....
T Consensus         6 ~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~-----~~~G~~~~~~~g~-l~v~~~~~~~~~d~~~-g~~~~~   75 (246)
T PF08450_consen    6 VWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--P-----GPNGMAFDRPDGR-LYVADSGGIAVVDPDT-GKVTVL   75 (246)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES--S-----SEEEEEEECTTSE-EEEEETTCEEEEETTT-TEEEEE
T ss_pred             EEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec--C-----CCceEEEEccCCE-EEEEEcCceEEEecCC-CcEEEE
Confidence            3465 67777777778899999998876543 222  1     35678888 6655 4544545566668875 322221


Q ss_pred             ecccc-cc-cccceEEEEEcCCCCcEEEEeecC--------CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEee
Q psy2305         150 RNLKP-WF-RKNIVSAIAINPVHPDICALGTYS--------KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSG  219 (334)
Q Consensus       150 ~~~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  219 (334)
                      .. .. .. .....+.+++.|+|+ +.++....        |.|..++.. ++... +...-...+.++|+|+++.|+++
T Consensus        76 ~~-~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~  151 (246)
T PF08450_consen   76 AD-LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVA  151 (246)
T ss_dssp             EE-EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEEE
T ss_pred             ee-ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcchheeec
Confidence            10 11 11 345788999999998 66665433        568888876 44333 33334567899999999988755


Q ss_pred             ecCCCeEEEEEccCCCccc---eeecc-cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccc
Q psy2305         220 ARKDCEIICWDLRNPGCIL---HTFPR-QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY  295 (334)
Q Consensus       220 ~~~d~~i~iwd~~~~~~~~---~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  295 (334)
                      ....+.|..+++...+..+   ..+.. .......-.+++..+|++.++....+.|.+++.+ +            +.+.
T Consensus       152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G------------~~~~  218 (246)
T PF08450_consen  152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G------------KLLR  218 (246)
T ss_dssp             ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S------------CEEE
T ss_pred             ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c------------cEEE
Confidence            4378889999997533311   12211 1112235668899999988887788999999988 5            5555


Q ss_pred             eecccccccceeeeccC-CCc
Q psy2305         296 KFSAHQDCTNGVRWKHH-KFE  315 (334)
Q Consensus       296 ~~~~~~~~i~~~~~~~s-~~~  315 (334)
                      .+......+++++|  . ++.
T Consensus       219 ~i~~p~~~~t~~~f--gg~~~  237 (246)
T PF08450_consen  219 EIELPVPRPTNCAF--GGPDG  237 (246)
T ss_dssp             EEE-SSSSEEEEEE--ESTTS
T ss_pred             EEcCCCCCEEEEEE--ECCCC
Confidence            55544457899999  5 554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.33  E-value=2.8e-09  Score=87.61  Aligned_cols=219  Identities=14%  Similarity=0.152  Sum_probs=151.2

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCc---c-cccc---ccceeEEE-EcC-CCCEEEEeeCCcEEEEEcCCCC
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPY---N-QVDE---VTHAYSLA-FSL-DGNKIYAGFLSEVKIFSTDRPG  144 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~-~~~~---~~~v~~~~-~~~-~~~~l~~~~d~~i~i~d~~~~~  144 (334)
                      +.||+.++.. .-|.|.++|.++....+ +...   . ..+.   ..+..-+. |++ +|.+++..+.|...+.+... +
T Consensus       275 nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~-~  351 (668)
T COG4946         275 NSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWD-G  351 (668)
T ss_pred             CCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCC-C
Confidence            5577776654 45789999987755432 2211   0 0000   00111111 333 57888888999999888764 3


Q ss_pred             CeeeeecccccccccceEEEEEcCCCCcEEEEeecCC-eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC
Q psy2305         145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK-IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD  223 (334)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d  223 (334)
                      ..+      ..++...|.-..+.-+++ -++.|..|| .+-+||.++++. +.+...-+.|.++..+|+|++++++. ..
T Consensus       352 ~~i------qv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaN-dr  422 (668)
T COG4946         352 YSI------QVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVAN-DR  422 (668)
T ss_pred             eeE------EcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEc-Cc
Confidence            332      245667788888888887 788899998 899999887754 45566778899999999999999998 78


Q ss_pred             CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC----cEEEEeCCCCCCCCCCCccccccccceecc
Q psy2305         224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG----DLSIWNVNTSNLPSSPYEESVQEPLYKFSA  299 (334)
Q Consensus       224 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  299 (334)
                      ..|.+.|+.+ +.. +.+... ...-++.++|+|+++++|.+--+|    .|+++|+..++             +.....
T Consensus       423 ~el~vididn-gnv-~~idkS-~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K-------------iy~vTT  486 (668)
T COG4946         423 FELWVIDIDN-GNV-RLIDKS-EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK-------------IYDVTT  486 (668)
T ss_pred             eEEEEEEecC-CCe-eEeccc-ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe-------------EEEecC
Confidence            8999999997 553 333322 356788999999999999886654    79999999863             223333


Q ss_pred             cccccceeeeccCCCcccceeeEEeee
Q psy2305         300 HQDCTNGVRWKHHKFERDLLVADATCS  326 (334)
Q Consensus       300 ~~~~i~~~~~~~s~~~~~~~~~l~t~~  326 (334)
                      ....=.+-+|  .||+    ++|.--+
T Consensus       487 ~ta~DfsPaF--D~d~----ryLYfLs  507 (668)
T COG4946         487 PTAYDFSPAF--DPDG----RYLYFLS  507 (668)
T ss_pred             CcccccCccc--CCCC----cEEEEEe
Confidence            3333456678  8888    7765443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.33  E-value=2.6e-09  Score=99.58  Aligned_cols=280  Identities=11%  Similarity=0.060  Sum_probs=167.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEE----ECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTF----DLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      +.|.++.|-++...++.+..+|.|.+.    +..+...                ...+.-...|.+++|       |||+
T Consensus        76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~----------------E~VG~vd~GI~a~~W-------SPD~  132 (928)
T PF04762_consen   76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI----------------EIVGSVDSGILAASW-------SPDE  132 (928)
T ss_pred             CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee----------------EEEEEEcCcEEEEEE-------CCCc
Confidence            468889999998888888899999999    4444443                334445577888888       7799


Q ss_pred             cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcE--E-EEEcCCCCCeeeeecccc
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEV--K-IFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i--~-i~d~~~~~~~~~~~~~~~  154 (334)
                      .+|+..+.++++.+.+ .+.+.+.....+...-.....-++-|-.....+= |+.|.-  + +-|...+  .....  .+
T Consensus       133 Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~-Gs~gK~aa~~~~~p~~~--~~d~~--~~  206 (928)
T PF04762_consen  133 ELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFH-GSAGKAAARQLRDPTVP--KVDEG--KL  206 (928)
T ss_pred             CEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccC-cchhhhhhhhccCCCCC--ccccC--cc
Confidence            9999999999888875 4555554443321110000112222322211111 000000  0 0111100  00000  12


Q ss_pred             cccccceEEEEEcCCCCcEEEEeec------CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC--CeE
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTY------SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD--CEI  226 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d--~~i  226 (334)
                      . ....-..++|-.||. ++|+.+.      -+.+++|+- .|+...+-..-.+--.+++|.|.|++|++..+..  ..|
T Consensus       207 s-~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  207 S-WDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDV  283 (928)
T ss_pred             c-cCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEE
Confidence            2 445667899999999 8887764      257999994 5765555444444445799999999999887423  345


Q ss_pred             EEEEccCCCccceeeccc--ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccc-ccc
Q psy2305         227 ICWDLRNPGCILHTFPRQ--VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH-QDC  303 (334)
Q Consensus       227 ~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  303 (334)
                      .+|.-+  |-....|.-.  .....+..+.|++|+..||..-.|. |.+|-..+..          |-..+.+.-. ...
T Consensus       284 vFfErN--GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH----------WYLKqei~~~~~~~  350 (928)
T PF04762_consen  284 VFFERN--GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH----------WYLKQEIRFSSSES  350 (928)
T ss_pred             EEEecC--CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE----------EEEEEEEEccCCCC
Confidence            566544  4333333322  2356788999999999999977665 9999887752          1222333322 223


Q ss_pred             cceeeeccCCCcccceeeEEeeecceee
Q psy2305         304 TNGVRWKHHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       304 i~~~~~~~s~~~~~~~~~l~t~~~d~~i  331 (334)
                      +..+.|  +|..+   ..|.....+|.+
T Consensus       351 ~~~~~W--dpe~p---~~L~v~t~~g~~  373 (928)
T PF04762_consen  351 VNFVKW--DPEKP---LRLHVLTSNGQY  373 (928)
T ss_pred             CCceEE--CCCCC---CEEEEEecCCcE
Confidence            555889  88763   446666654544

>KOG3914|consensus

Probab=99.32  E-value=7.3e-11  Score=94.57  Aligned_cols=159  Identities=15%  Similarity=0.191  Sum_probs=113.3

Q ss_pred             cccceecCCCcEEEEeeCCCcEEEEeCCCCee----eEEEcCccccccccceeEEEEcCCCCEEEEee----CCcEEEEE
Q psy2305          68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEI----KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----LSEVKIFS  139 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~i~d  139 (334)
                      +.....++++++||++..+....++++.....    ........      ..+.+.|..+......+.    ...+.+|.
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~------~~~ai~~~~~~~sv~v~dkagD~~~~di~s  138 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK------RPTAISFIREDTSVLVADKAGDVYSFDILS  138 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc------CcceeeeeeccceEEEEeecCCceeeeeec
Confidence            34456688999999998888877777654332    22222111      345556655555444332    35566666


Q ss_pred             cCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-ccCCCCeEEEEEccCCcEEEe
Q psy2305         140 TDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~  218 (334)
                      ... + ...    ...+|-..++.++|+||++ +|+++..|..|++-.......+..+ -||..-|..++.-++. .|++
T Consensus       139 ~~~-~-~~~----~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS  210 (390)
T KOG3914|consen  139 ADS-G-RCE----PILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLS  210 (390)
T ss_pred             ccc-c-Ccc----hhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeee
Confidence            553 2 222    4679999999999999999 9999999999999888766555555 5799999999998765 5888


Q ss_pred             eecCCCeEEEEEccCCCccceeec
Q psy2305         219 GARKDCEIICWDLRNPGCILHTFP  242 (334)
Q Consensus       219 ~~~~d~~i~iwd~~~~~~~~~~~~  242 (334)
                      ++ .|+++++||+++ ++.+..+.
T Consensus       211 ~s-GD~tlr~Wd~~s-gk~L~t~d  232 (390)
T KOG3914|consen  211 GS-GDKTLRLWDITS-GKLLDTCD  232 (390)
T ss_pred             cC-CCCcEEEEeccc-CCcccccc
Confidence            88 899999999998 66665554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.28  E-value=4.1e-08  Score=78.26  Aligned_cols=232  Identities=16%  Similarity=0.210  Sum_probs=145.7

Q ss_pred             eEEEEcC-CCcEEEEeeCCCe-EEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           5 EDVDEAP-DGTCLLTNSNDNH-LRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         5 ~~~~~sp-~~~~l~~~~~d~~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      ..++.+| ++..++.+-..|+ ..+||..+++...              .+....+.-.+.      --.||+||++|++
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~--------------~~~a~~gRHFyG------Hg~fs~dG~~Lyt   67 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ--------------RLWAPPGRHFYG------HGVFSPDGRLLYT   67 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee--------------EEcCCCCCEEec------CEEEcCCCCEEEE
Confidence            4678889 5667777777764 6679999988762              222222111111      1235899999998


Q ss_pred             eeC-----CCcEEEEeCC-CCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeC--------C-----------cEEE
Q psy2305          83 SSM-----YAPIHLWDSV-GGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL--------S-----------EVKI  137 (334)
Q Consensus        83 ~~~-----d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--------~-----------~i~i  137 (334)
                      .-.     .|.|-|||.. +-+.+..+..+.-     ....+.+.|||+.|+++..        |           ++..
T Consensus        68 TEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI-----GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~  142 (305)
T PF07433_consen   68 TENDYETGRGVIGVYDAARGYRRIGEFPSHGI-----GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVY  142 (305)
T ss_pred             eccccCCCcEEEEEEECcCCcEEEeEecCCCc-----ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEE
Confidence            643     4789999998 5566777776554     5678999999988886532        2           2334


Q ss_pred             EEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCC-------eEEEEECCCCCceEee-------ccCCCC
Q psy2305         138 FSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK-------IIGLFSDSDGRPLFFL-------KGHNGG  203 (334)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~-------~~~~~~  203 (334)
                      .|..+ +..+.+..+....|...+..+++.++|. .++..-..|       -|.+++.  ++.+..+       ..-.+.
T Consensus       143 ld~~s-G~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y  218 (305)
T PF07433_consen  143 LDARS-GALLEQVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGY  218 (305)
T ss_pred             EecCC-CceeeeeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCc
Confidence            44444 5555443222245778899999999996 444332222       2444443  2222222       223467


Q ss_pred             eEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEE
Q psy2305         204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLS  272 (334)
Q Consensus       204 i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  272 (334)
                      +-+|++++++..+++.+...+.+.+||..+ +..+....    -..+..++-.+++ ++++.+ .|.+.
T Consensus       219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~----l~D~cGva~~~~~-f~~ssG-~G~~~  280 (305)
T PF07433_consen  219 IGSIAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVP----LPDACGVAPTDDG-FLVSSG-QGQLI  280 (305)
T ss_pred             eEEEEEeCCCCEEEEECCCCCEEEEEECCC-CCEeeccc----cCceeeeeecCCc-eEEeCC-CccEE
Confidence            889999999998877665788999999998 66555443    2234445555555 555554 45433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.28  E-value=7.4e-09  Score=80.03  Aligned_cols=214  Identities=11%  Similarity=0.141  Sum_probs=126.7

Q ss_pred             EEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeee-eceeEEEEEEecccceecCCCcEEEEee
Q psy2305           6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK-EGGIIYDYVWYPKTSSIDGFTSYFLCSS   84 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~s~~~~~l~~~~   84 (334)
                      .++.+.||+.||.. .|..|.|=..+..-..            ........ ...+    .|  +-++||||+.+||.+.
T Consensus         2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~s------------i~~kcqVpkD~~P----QW--Rkl~WSpD~tlLa~a~   62 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSS------------IIGKCQVPKDPNP----QW--RKLAWSPDCTLLAYAE   62 (282)
T ss_pred             ceeecCCCcEEEEE-eccEEEEEeccCCchh------------eeEEEecCCCCCc----hh--eEEEECCCCcEEEEEc
Confidence            46788999988876 5667777554432111            00000100 0111    11  2355589999999999


Q ss_pred             CCCcEEEEeCCCCeeeEEEcCcc-c-cccccceeEEEEcCCC-------CEEEEeeCCcEEEEEcCC--CCCeeeeeccc
Q psy2305          85 MYAPIHLWDSVGGEIKATYRPYN-Q-VDEVTHAYSLAFSLDG-------NKIYAGFLSEVKIFSTDR--PGRECVSRNLK  153 (334)
Q Consensus        85 ~d~~i~iwd~~~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~-------~~l~~~~d~~i~i~d~~~--~~~~~~~~~~~  153 (334)
                      ..|+|+++|+.. ..+..+.... . .+-...|..|.|.+-.       .+|+...+|.++-|-+..  ...-.......
T Consensus        63 S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs  141 (282)
T PF15492_consen   63 STGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS  141 (282)
T ss_pred             CCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE
Confidence            999999999864 4444443311 0 0111267777776532       355566688888777632  11111111112


Q ss_pred             c-cccccceEEEEEcCCCCcEEEEeec-CC----------eEEEEECCCCCceEe--------------------e----
Q psy2305         154 P-WFRKNIVSAIAINPVHPDICALGTY-SK----------IIGLFSDSDGRPLFF--------------------L----  197 (334)
Q Consensus       154 ~-~~~~~~v~~~~~~~~~~~~l~~~~~-dg----------~i~i~d~~~~~~~~~--------------------~----  197 (334)
                      + ..+...|.++.++|..+ +|++|+. ..          -+.-|.+-++.+...                    +    
T Consensus       142 f~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~  220 (282)
T PF15492_consen  142 FSSHYPHGINSAVYHPKHR-LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK  220 (282)
T ss_pred             ecccCCCceeEEEEcCCCC-EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee
Confidence            2 23467899999999998 7766643 21          255665432211100                    0    


Q ss_pred             -----ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeec
Q psy2305         198 -----KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP  242 (334)
Q Consensus       198 -----~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~  242 (334)
                           ......|..|..||||+.|++.. .+|.|.+|++.+ -.......
T Consensus       221 ~fs~~~~~~d~i~kmSlSPdg~~La~ih-~sG~lsLW~iPs-L~~~~~W~  268 (282)
T PF15492_consen  221 FFSRQGQEQDGIFKMSLSPDGSLLACIH-FSGSLSLWEIPS-LRLQRSWK  268 (282)
T ss_pred             eeeccccCCCceEEEEECCCCCEEEEEE-cCCeEEEEecCc-chhhcccc
Confidence                 11245688999999999999999 899999999986 44444443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.26  E-value=3.9e-08  Score=91.92  Aligned_cols=248  Identities=9%  Similarity=0.070  Sum_probs=151.8

Q ss_pred             eeEEEEcCCCcEEEEeeC------CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           4 EEDVDEAPDGTCLLTNSN------DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      -..++|-.||.|+|+.+.      -..+|||+-+ +...              .     ..+++..+.   ..++|-|.|
T Consensus       212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~--------------s-----tSE~v~gLe---~~l~WrPsG  268 (928)
T PF04762_consen  212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQ--------------S-----TSEPVDGLE---GALSWRPSG  268 (928)
T ss_pred             ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEE--------------e-----ccccCCCcc---CCccCCCCC
Confidence            357889999999998764      2589999976 4332              0     112232221   235567899


Q ss_pred             cEEEEeeC---CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccc
Q psy2305          78 SYFLCSSM---YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        78 ~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      ++||+...   ...|.+|. ++|-....|..... .....|..+.|++|+..|+......|.+|-...-.-.+++.  ..
T Consensus       269 ~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~-~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqe--i~  344 (928)
T PF04762_consen  269 NLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFD-PEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQE--IR  344 (928)
T ss_pred             CEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCC-CCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEE--EE
Confidence            99998865   34677777 34544444443221 11127899999999999998765569999987421122221  11


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECC----CC--------CceEeec-----------------------c
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS----DG--------RPLFFLK-----------------------G  199 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~--------~~~~~~~-----------------------~  199 (334)
                      ......+..+.|+|.....|...+.+|.+..++..    .+        ..+..+.                       .
T Consensus       345 ~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~  424 (928)
T PF04762_consen  345 FSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE  424 (928)
T ss_pred             ccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc
Confidence            22233455599999877677777776777665541    11        0111110                       1


Q ss_pred             CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc-------ceeecc--------cccCCceEEEEecCCCceEEe
Q psy2305         200 HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI-------LHTFPR--------QVSTNQRVYFDLTSCSNYLLS  264 (334)
Q Consensus       200 ~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~-------~~~~~~--------~~~~~~~~~~~~s~~~~~l~~  264 (334)
                      -..+|.+++|++++..+++-. .||.|.+|........       ...+..        .........+.|..+..+++.
T Consensus       425 ~~~~v~~vaf~~~~~~~avl~-~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (928)
T PF04762_consen  425 LPSPVNDVAFSPSNSRFAVLT-SDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVL  503 (928)
T ss_pred             CCCCcEEEEEeCCCCeEEEEE-CCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEE
Confidence            246789999999998888888 7999999986542111       111111        112334567778777776666


Q ss_pred             eecC---CcEEEEeCCCC
Q psy2305         265 GNTN---GDLSIWNVNTS  279 (334)
Q Consensus       265 ~~~d---g~i~iwd~~~~  279 (334)
                      ...+   ..+.++++...
T Consensus       504 ~~~~~~~~~i~~~~~~~~  521 (928)
T PF04762_consen  504 SDSDSNQSKIVLVDIDDS  521 (928)
T ss_pred             EecCcccceEEEEEeccC
Confidence            5554   67888887543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.25  E-value=1.8e-08  Score=86.16  Aligned_cols=186  Identities=11%  Similarity=0.057  Sum_probs=109.9

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-eCCcEEEEEcCCCCCeeeeecccc
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      ++..+++++.++.+..+|..+|+.+.......      .+.+.-...++ .++.+ .++.+..||..+ ++.........
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------~~~~~p~v~~~-~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~  175 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS------EVLSPPLVANG-LVVVRTNDGRLTALDAAT-GERLWTYSRVT  175 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc------eeecCCEEECC-EEEEECCCCeEEEEEcCC-CceeeEEccCC
Confidence            45677888889999999999999887665422      22211111233 45555 489999999987 55544321100


Q ss_pred             cccc-cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC--C--Ce---EEEEEcc--CCcEEEeeecCCC
Q psy2305         155 WFRK-NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN--G--GI---THLEFSS--NGILLFSGARKDC  224 (334)
Q Consensus       155 ~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~--~i---~~~~~~~--~~~~l~~~~~~d~  224 (334)
                      .... ......... + . .++.+..++.+..+|.++++.+.......  +  .+   ..+.-+|  .+..+++++ .++
T Consensus       176 ~~~~~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~-~~g  251 (377)
T TIGR03300       176 PALTLRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVS-YQG  251 (377)
T ss_pred             CceeecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEE-cCC
Confidence            0000 000111121 2 3 67778888999999999998765432110  0  00   0011111  245777788 799


Q ss_pred             eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         225 EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       225 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      .++.+|..+ ++.+......  .  ....  ...+..++.++.+|.+..+|..+++
T Consensus       252 ~l~a~d~~t-G~~~W~~~~~--~--~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       252 RVAALDLRS-GRVLWKRDAS--S--YQGP--AVDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             EEEEEECCC-CcEEEeeccC--C--ccCc--eEeCCEEEEECCCCeEEEEECCCCc
Confidence            999999987 6655544321  1  1111  1245677777889999999999883

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190|consensus

Probab=99.25  E-value=6.7e-11  Score=98.83  Aligned_cols=288  Identities=14%  Similarity=0.136  Sum_probs=172.5

Q ss_pred             eEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee
Q psy2305           5 EDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS   84 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~   84 (334)
                      +.++--.+.+.+++++.|.+|++|.++...-.       .....+..++. .|..+|.++.|       -.+.++++++ 
T Consensus       739 Rai~AidNENSFiSASkDKTVKLWSik~EgD~-------~~tsaCQfTY~-aHkk~i~~igf-------L~~lr~i~Sc-  802 (1034)
T KOG4190|consen  739 RAIAAIDNENSFISASKDKTVKLWSIKPEGDE-------IGTSACQFTYQ-AHKKPIHDIGF-------LADLRSIASC-  802 (1034)
T ss_pred             HHHHhcccccceeeccCCceEEEEEeccccCc-------cccceeeeEhh-hccCcccceee-------eeccceeeec-
Confidence            33333345667899999999999998753211       01111222333 35677877776       4466666654 


Q ss_pred             CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          85 MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        85 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                       ||-|.+||.--++.+............+.|.++. +-+...++++ + ..+|+++|.+..+.....+.....+...-++
T Consensus       803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             -cCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence             7889999988887765443222222111333332 2234455555 4 8999999998744333321112234456789


Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEE-EEccCCCccceee
Q psy2305         163 AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIIC-WDLRNPGCILHTF  241 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i-wd~~~~~~~~~~~  241 (334)
                      +++..+.|+ .++.+-.+|.|.+.|.++|+.+..+....-....++ .|..+.|+... .|.++.+ |..-. +......
T Consensus       881 ~iaVa~~GN-~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sa-ldHslaVnWhald-gimh~q~  956 (1034)
T KOG4190|consen  881 AIAVADKGN-KLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSA-LDHSLAVNWHALD-GIMHLQD  956 (1034)
T ss_pred             EEEeccCcc-hhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhc-ccceeEeeehhcC-Ceeeecc
Confidence            999999999 999999999999999999998888765544444444 46667777777 7889888 87654 4333333


Q ss_pred             cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceec--ccccccceeeeccCCCcccce
Q psy2305         242 PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS--AHQDCTNGVRWKHHKFERDLL  319 (334)
Q Consensus       242 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~s~~~~~~~  319 (334)
                      +........    .-.-|.-|+++.....+.+|.-......        ...+.++.  ...+..++++-  -|-+    
T Consensus       957 kpppepahf----lqsvgpSLV~a~~Gn~lgVYad~a~~ha--------~stitKiR~d~f~G~lTala~--LPLN---- 1018 (1034)
T KOG4190|consen  957 KPPPEPAHF----LQSVGPSLVTAQNGNILGVYADSAELHA--------ESTITKIRPDEFPGTLTALAP--LPLN---- 1018 (1034)
T ss_pred             CCCCcchhh----hhccCceeEEeccCcEEEEEecchhhhh--------hhhhccccccccCCccceeee--cccc----
Confidence            322111111    1123556677666666777742211000        01111221  12356777887  7877    


Q ss_pred             eeEEeeecceeee
Q psy2305         320 VADATCSGQITNV  332 (334)
Q Consensus       320 ~~l~t~~~d~~i~  332 (334)
                      .-+..|.+.|.|.
T Consensus      1019 ~afLaGne~G~Ia 1031 (1034)
T KOG4190|consen 1019 CAFLAGNEHGAIA 1031 (1034)
T ss_pred             chhhccCCCCcee
Confidence            6777777777664

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.25  E-value=1.6e-07  Score=75.25  Aligned_cols=222  Identities=14%  Similarity=0.095  Sum_probs=137.9

Q ss_pred             eEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceec-CCCcEEEE
Q psy2305           5 EDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSID-GFTSYFLC   82 (334)
Q Consensus         5 ~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~l~~   82 (334)
                      .++.|.+ ++.++++--..+.|..|+..++...               .+..   .....+.+       . +++.++++
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~---------------~~~~---~~~~G~~~-------~~~~g~l~v~   57 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE---------------VIDL---PGPNGMAF-------DRPDGRLYVA   57 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEE---------------EEES---SSEEEEEE-------ECTTSEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEE---------------EEec---CCCceEEE-------EccCCEEEEE
Confidence            3678998 6777777768899999999887653               1111   11333333       5 56655444


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C--------CcEEEEEcCCCCCeeeeeccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L--------SEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d--------~~i~i~d~~~~~~~~~~~~~~  153 (334)
                       ... .+.++|..+++................++.+++.|+|++.++.. .        |.+..++..  ++ ..    .
T Consensus        58 -~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~----~  128 (246)
T PF08450_consen   58 -DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VT----V  128 (246)
T ss_dssp             -ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SE-EE----E
T ss_pred             -EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--Ce-EE----E
Confidence             444 46666998887654444321111222789999999999777643 2        334445544  22 22    1


Q ss_pred             ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc-------eEeeccCCCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305         154 PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP-------LFFLKGHNGGITHLEFSSNGILLFSGARKDCEI  226 (334)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i  226 (334)
                      ....-...+.++|+|+++.++++-+..+.|..|++.....       ...+....+....+++..+|++.++.. ..+.|
T Consensus       129 ~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I  207 (246)
T PF08450_consen  129 VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRI  207 (246)
T ss_dssp             EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEE
T ss_pred             EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEE
Confidence            2333456789999999983445667788999999864322       112222223478899999998777766 78999


Q ss_pred             EEEEccCCCccceeecccccCCceEEEEe-cCCCceEEee
Q psy2305         227 ICWDLRNPGCILHTFPRQVSTNQRVYFDL-TSCSNYLLSG  265 (334)
Q Consensus       227 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~  265 (334)
                      .+++.+  ++.+..+...  ...+++++| .++.+.|+..
T Consensus       208 ~~~~p~--G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  208 VVFDPD--GKLLREIELP--VPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEETT--SCEEEEEE-S--SSSEEEEEEESTTSSEEEEE
T ss_pred             EEECCC--ccEEEEEcCC--CCCEEEEEEECCCCCEEEEE
Confidence            999987  6666666644  346788888 4665555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2695|consensus

Probab=99.24  E-value=4.5e-11  Score=93.99  Aligned_cols=152  Identities=16%  Similarity=0.169  Sum_probs=118.4

Q ss_pred             EEEcCC--CCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC----
Q psy2305         118 LAFSLD--GNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG----  191 (334)
Q Consensus       118 ~~~~~~--~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----  191 (334)
                      .+|+-+  +-++.+|.+..+-+-|+.+.-.  +     ....++.|.++.|...++ ++..|+.+|.|..+|++..    
T Consensus       217 CawSlni~gyhfs~G~sqqv~L~nvetg~~--q-----sf~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~  288 (425)
T KOG2695|consen  217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQ--Q-----SFQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGN  288 (425)
T ss_pred             hhhhhccceeeecccccceeEEEEeecccc--c-----ccccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCC
Confidence            355532  3344455688888888886222  1     233677899999999888 9999999999999999864    


Q ss_pred             -CceEeeccCCCCeEEEEEcc-CCcEEEeeecCCCeEEEEEccCCCcc---ceeecccccCCceEEEEecCCCceEEeee
Q psy2305         192 -RPLFFLKGHNGGITHLEFSS-NGILLFSGARKDCEIICWDLRNPGCI---LHTFPRQVSTNQRVYFDLTSCSNYLLSGN  266 (334)
Q Consensus       192 -~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  266 (334)
                       .+.+.+. |...|+++..-. ++++|++.+ .+|+|++||++. .+.   +..+.+|.......-+-..+....+++++
T Consensus       289 ~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~-M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G  365 (425)
T KOG2695|consen  289 GWCAQRLY-HDSSVTSLQILQFSQQKLMASD-MTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG  365 (425)
T ss_pred             CcceEEEE-cCcchhhhhhhccccceEeecc-CcCceeEeeehh-hhcccceeeeecccccccccccccccccceEEEcc
Confidence             4555555 888999998776 788898888 999999999997 444   78888887766555566778888999999


Q ss_pred             cCCcEEEEeCCCCC
Q psy2305         267 TNGDLSIWNVNTSN  280 (334)
Q Consensus       267 ~dg~i~iwd~~~~~  280 (334)
                      .|-..+||.+.++.
T Consensus       366 dDcytRiWsl~~gh  379 (425)
T KOG2695|consen  366 DDCYTRIWSLDSGH  379 (425)
T ss_pred             CeeEEEEEecccCc
Confidence            99999999999983

>KOG3914|consensus

Probab=99.23  E-value=2.8e-10  Score=91.30  Aligned_cols=164  Identities=14%  Similarity=0.039  Sum_probs=111.1

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      +..+..+|.+++||++..+....++++.......                   .-..+.++.-.|..+.+-.+...+..+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~-------------------kl~~~~~v~~~~~ai~~~~~~~sv~v~  125 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGA-------------------KLLDVSCVPKRPTAISFIREDTSVLVA  125 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcc-------------------eeeeEeecccCcceeeeeeccceEEEE
Confidence            3445678899999999888887777776544210                   012233333334444444454444444


Q ss_pred             e---CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          84 S---MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        84 ~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      .   ....+.+|....+..... -+  |   ...++.++|+||+++++++. |..|++-.... ...+..   ...+|+.
T Consensus       126 dkagD~~~~di~s~~~~~~~~~-lG--h---vSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~Ies---fclGH~e  195 (390)
T KOG3914|consen  126 DKAGDVYSFDILSADSGRCEPI-LG--H---VSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIES---FCLGHKE  195 (390)
T ss_pred             eecCCceeeeeecccccCcchh-hh--h---hhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhh---hccccHh
Confidence            3   344555665554433322 22  2   22889999999999999998 99999977764 223332   4678999


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK  198 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  198 (334)
                      .|..++.-++.  .|++++.|++|++||+++++.+.++.
T Consensus       196 FVS~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  196 FVSTISLTDNY--LLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             heeeeeeccCc--eeeecCCCCcEEEEecccCCcccccc
Confidence            99999998876  58999999999999999999887664

>KOG2041|consensus

Probab=99.21  E-value=3.1e-10  Score=97.67  Aligned_cols=233  Identities=13%  Similarity=0.100  Sum_probs=159.7

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCee---------------eEEEcCccccccccceeEEEEc
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEI---------------KATYRPYNQVDEVTHAYSLAFS  121 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~  121 (334)
                      ....+.++.|       +.+..++++|+.||.+++..+.+...               -+++.+|+.     .|..+.|+
T Consensus        13 nnvkL~c~~W-------Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-----sV~vvTWN   80 (1189)
T KOG2041|consen   13 NNVKLHCAEW-------NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-----SVMVVTWN   80 (1189)
T ss_pred             CCceEEEEEE-------cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc-----eEEEEEec
Confidence            4456777777       56888999999999999997654221               123344333     89999999


Q ss_pred             CCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce-Eeecc
Q psy2305         122 LDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL-FFLKG  199 (334)
Q Consensus       122 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~  199 (334)
                      .+.+.|.++. +|-|.+|-+-. +.-+...  .....++-|.+++|+.+|. .+....+||.|.+=.++-++.- +.+++
T Consensus        81 e~~QKLTtSDt~GlIiVWmlyk-gsW~EEM--iNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLkg  156 (1189)
T KOG2041|consen   81 ENNQKLTTSDTSGLIIVWMLYK-GSWCEEM--INNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELKG  156 (1189)
T ss_pred             cccccccccCCCceEEEEeeec-ccHHHHH--hhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcch
Confidence            9999998887 99999999886 3332210  2234567789999999999 9999999999988776533221 11222


Q ss_pred             CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeec--------ccc--cCCceEEEEe--------cCCCce
Q psy2305         200 HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP--------RQV--STNQRVYFDL--------TSCSNY  261 (334)
Q Consensus       200 ~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~--~~~~~~~~~~--------s~~~~~  261 (334)
                        .....+.|++|.+.++.+- ..|.+.+||...  .....+.        +..  .+..+..+.|        -|+...
T Consensus       157 --~~l~hv~ws~D~~~~Lf~~-ange~hlydnqg--nF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~  231 (1189)
T KOG2041|consen  157 --QLLAHVLWSEDLEQALFKK-ANGETHLYDNQG--NFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR  231 (1189)
T ss_pred             --heccceeecccHHHHHhhh-cCCcEEEecccc--cHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE
Confidence              2234789999999988888 899999999863  2111111        000  0111222222        357889


Q ss_pred             EEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecce
Q psy2305         262 LLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQI  329 (334)
Q Consensus       262 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~  329 (334)
                      |+++-.+|.+.|-.-....           .+...-.  .-.+.+..|  +++|    .+||.+|.|.
T Consensus       232 lavcy~nGr~QiMR~eND~-----------~Pvv~dt--gm~~vgakW--nh~G----~vLAvcG~~~  280 (1189)
T KOG2041|consen  232 LAVCYANGRMQIMRSENDP-----------EPVVVDT--GMKIVGAKW--NHNG----AVLAVCGNDS  280 (1189)
T ss_pred             EEEEEcCceehhhhhcCCC-----------CCeEEec--ccEeeccee--cCCC----cEEEEccCcc
Confidence            9999999999987665542           2332222  246889999  9999    9999998874

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=7.8e-10  Score=86.08  Aligned_cols=247  Identities=15%  Similarity=0.135  Sum_probs=152.6

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe-----eeEEEcCcccc-------ccccceeEEEEcCCC
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE-----IKATYRPYNQV-------DEVTHAYSLAFSLDG  124 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~-------~~~~~v~~~~~~~~~  124 (334)
                      +...|+++.|       ...|.+|++|...|.|.++.-....     ....++.|...       .-...|..+.|..++
T Consensus        25 ead~ItaVef-------d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t   97 (460)
T COG5170          25 EADKITAVEF-------DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT   97 (460)
T ss_pred             ccceeeEEEe-------ccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC
Confidence            4466777666       6688999999999999999754322     11223332210       001157788887664


Q ss_pred             ---CEEEEeeCCcEEEEEcCCC------------------CCeeee------------------ecc--cccccccceEE
Q psy2305         125 ---NKIYAGFLSEVKIFSTDRP------------------GRECVS------------------RNL--KPWFRKNIVSA  163 (334)
Q Consensus       125 ---~~l~~~~d~~i~i~d~~~~------------------~~~~~~------------------~~~--~~~~~~~~v~~  163 (334)
                         .+|+++.|.+|++|.+...                  +.++..                  .+.  ....|.-.+.+
T Consensus        98 ~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS  177 (460)
T COG5170          98 GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINS  177 (460)
T ss_pred             CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeee
Confidence               4667778999999998642                  000000                  000  12346667889


Q ss_pred             EEEcCCCCcEEEEeecCCeEEEEECCCCC---ceEeeccCC-----CCeEEEEEccCCc-EEEeeecCCCeEEEEEccCC
Q psy2305         164 IAINPVHPDICALGTYSKIIGLFSDSDGR---PLFFLKGHN-----GGITHLEFSSNGI-LLFSGARKDCEIICWDLRNP  234 (334)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~-----~~i~~~~~~~~~~-~l~~~~~~d~~i~iwd~~~~  234 (334)
                      +.++.+.. .++++ .|=.|.+|+++-..   .+..++.|.     .-|++..|+|... .+...+ ..|.|++-|++..
T Consensus       178 iS~NsD~e-t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs-SkG~Ikl~DlRq~  254 (460)
T COG5170         178 ISFNSDKE-TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS-SKGEIKLNDLRQS  254 (460)
T ss_pred             eeecCchh-eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec-CCCcEEehhhhhh
Confidence            99999987 66654 67889999986432   122234443     3578899999654 444445 6999999999842


Q ss_pred             C-----ccceeeccc--------ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccc
Q psy2305         235 G-----CILHTFPRQ--------VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ  301 (334)
Q Consensus       235 ~-----~~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (334)
                      .     +.+......        .....+..+.|+++|+++++-+. -+++|||++..+           .++.+..-|.
T Consensus       255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k-----------~pikTi~~h~  322 (460)
T COG5170         255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK-----------NPIKTIPMHC  322 (460)
T ss_pred             hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc-----------CCceeechHH
Confidence            1     111111100        01234567899999999998754 479999999875           4555554432


Q ss_pred             ------------ccc---ceeeeccCCCcccceeeEEeeecceee
Q psy2305         302 ------------DCT---NGVRWKHHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       302 ------------~~i---~~~~~~~s~~~~~~~~~l~t~~~d~~i  331 (334)
                                  +.|   ..+.|  +-|.    ..+++|+....+
T Consensus       323 ~l~~~l~d~YEnDaifdkFeisf--Sgd~----~~v~sgsy~NNf  361 (460)
T COG5170         323 DLMDELNDVYENDAIFDKFEISF--SGDD----KHVLSGSYSNNF  361 (460)
T ss_pred             HHHHHHHhhhhccceeeeEEEEe--cCCc----ccccccccccce
Confidence                        122   23567  7777    777777766554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.20  E-value=8.6e-08  Score=76.46  Aligned_cols=196  Identities=12%  Similarity=0.092  Sum_probs=133.3

Q ss_pred             ecC-CCcEEEEeeCCCc-EEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee------CCcEEEEEcCCCC
Q psy2305          73 IDG-FTSYFLCSSMYAP-IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF------LSEVKIFSTDRPG  144 (334)
Q Consensus        73 ~s~-~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~i~d~~~~~  144 (334)
                      .+| ....++.+-+-|+ ..+||..+++....+......-   ..-.-.|++||++|++..      .|.|-+||....-
T Consensus        12 ~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH---FyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen   12 AHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH---FYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             eCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE---EecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            366 5666778877775 6789999999887776533211   223578999999999752      4789999998423


Q ss_pred             CeeeeecccccccccceEEEEEcCCCCcEEEEee------------------cCCeEEEEECCCCCceEe--e--ccCCC
Q psy2305         145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGT------------------YSKIIGLFSDSDGRPLFF--L--KGHNG  202 (334)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~--~--~~~~~  202 (334)
                      +.+.    .+..|.-....+.+.|||+ .|+++.                  .+..+.+.|..+++.+..  +  .-|..
T Consensus        89 ~ri~----E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l  163 (305)
T PF07433_consen   89 RRIG----EFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL  163 (305)
T ss_pred             EEEe----EecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence            3333    4566666667888999997 565542                  223577778888887766  4  33777


Q ss_pred             CeEEEEEccCCcEEEeeecCCCe-------EEEEEccCCCccceeecc-----cccCCceEEEEecCCCceEEeee-cCC
Q psy2305         203 GITHLEFSSNGILLFSGARKDCE-------IICWDLRNPGCILHTFPR-----QVSTNQRVYFDLTSCSNYLLSGN-TNG  269 (334)
Q Consensus       203 ~i~~~~~~~~~~~l~~~~~~d~~-------i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~-~dg  269 (334)
                      .|..+++.++|..++..- ..+.       +-+++..   ..+..+..     ..-..++-++++++++.++++.+ ..+
T Consensus       164 SiRHLa~~~~G~V~~a~Q-~qg~~~~~~PLva~~~~g---~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg  239 (305)
T PF07433_consen  164 SIRHLAVDGDGTVAFAMQ-YQGDPGDAPPLVALHRRG---GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG  239 (305)
T ss_pred             ceeeEEecCCCcEEEEEe-cCCCCCccCCeEEEEcCC---CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence            899999999997666554 3332       3333332   22332322     11246788899999998876554 567


Q ss_pred             cEEEEeCCCCC
Q psy2305         270 DLSIWNVNTSN  280 (334)
Q Consensus       270 ~i~iwd~~~~~  280 (334)
                      .+.+||..++.
T Consensus       240 ~~~~~d~~tg~  250 (305)
T PF07433_consen  240 RVAVWDAATGR  250 (305)
T ss_pred             EEEEEECCCCC
Confidence            89999999983

>KOG4532|consensus

Probab=99.19  E-value=2e-09  Score=82.11  Aligned_cols=206  Identities=11%  Similarity=0.073  Sum_probs=128.1

Q ss_pred             eCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCC-----CCEEEEee-CCcEEEEEcCCCCCeeeeeccccc
Q psy2305          84 SMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLD-----GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      ++...+.+|++-+..  .+...            ..|.|-|.     --+|+.|+ .|...+|...+......    ...
T Consensus        49 ~~t~sv~i~~~y~N~~~iv~~y------------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~----~cd  112 (344)
T KOG4532|consen   49 SKTISVPINSHYSNPKGIVEFY------------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLY----QCD  112 (344)
T ss_pred             cceeeeEeccccCCchhhEEee------------ecccccchHhhccccEEEeccccceeeeecccCccccee----eec
Confidence            344557778776543  22222            24455542     34677775 89999999986443333    233


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG  235 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~  235 (334)
                      .+...|+-+.=.-+...-+..++.|.+++++++.-+.....+....-.+.+++++++++++++.+ ....|..|.+...+
T Consensus       113 ~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vg-ds~~Vf~y~id~~s  191 (344)
T KOG4532|consen  113 VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVG-DSRRVFRYAIDDES  191 (344)
T ss_pred             ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEec-CCCcceEEEeCCcc
Confidence            33332221111112222455677888888888754433222221222378999999999999999 79999999998755


Q ss_pred             ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      .-+..+........-.+..|+.....+|++..||++.|||++....+   -    ......-..|.+.+..+.|  ++.|
T Consensus       192 ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp---m----~~~sstrp~hnGa~R~c~F--sl~g  262 (344)
T KOG4532|consen  192 EYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP---M----AEISSTRPHHNGAFRVCRF--SLYG  262 (344)
T ss_pred             ceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc---h----hhhcccCCCCCCceEEEEe--cCCC
Confidence            44433222223344556779999999999999999999999986422   0    0111222347889999999  8866

>KOG4714|consensus

Probab=99.14  E-value=1.2e-09  Score=82.83  Aligned_cols=147  Identities=18%  Similarity=0.209  Sum_probs=100.8

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCeee-EEEcCccccccccceeEEEEcCCCCEEEEee------CCcEEEEEcCCCCCeee
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGEIK-ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF------LSEVKIFSTDRPGRECV  148 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~  148 (334)
                      -++.++++..||.+.+++.+....+ ..+.. .+.    .-.+.++...++.+.++.      -+..++|+++.......
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~-~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~  174 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPS-IHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP  174 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhccc-ccc----cccccceeecccEEecCCcceEeeccceeeecccccccccc
Confidence            3556899999999999987652111 11111 111    122334444556665542      35667777764222221


Q ss_pred             eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC-ceEeeccCCCCeEEEEEcc-CCcEEEeeecCCCeE
Q psy2305         149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR-PLFFLKGHNGGITHLEFSS-NGILLFSGARKDCEI  226 (334)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i  226 (334)
                           .......|++++-+|..++++++|+.||.+-+||.++.. +...+..|+.+|..+-|+| ++..|++++ +||.+
T Consensus       175 -----~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s-edGsl  248 (319)
T KOG4714|consen  175 -----SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS-EDGSL  248 (319)
T ss_pred             -----cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec-CCCcE
Confidence                 112223499999999988788999999999999998874 4455688999999999999 677899999 99999


Q ss_pred             EEEEccC
Q psy2305         227 ICWDLRN  233 (334)
Q Consensus       227 ~iwd~~~  233 (334)
                      ..||..+
T Consensus       249 w~wdas~  255 (319)
T KOG4714|consen  249 WHWDAST  255 (319)
T ss_pred             EEEcCCC
Confidence            9999873

>KOG1912|consensus

Probab=99.13  E-value=7e-08  Score=84.26  Aligned_cols=201  Identities=14%  Similarity=0.111  Sum_probs=132.3

Q ss_pred             ceeEEEEcCC------C------cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEeccc
Q psy2305           3 IEEDVDEAPD------G------TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT   70 (334)
Q Consensus         3 ~V~~~~~sp~------~------~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (334)
                      .|+.+.|.|-      +      -+||++...|.|.+||...+...               ....++..++.+++|.|. 
T Consensus        57 ~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~---------------~~l~~~~~~~qdl~W~~~-  120 (1062)
T KOG1912|consen   57 AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI---------------NWLSHSNDSVQDLCWVPA-  120 (1062)
T ss_pred             ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh---------------hhhcCCCcchhheeeeec-
Confidence            4778888762      1      25778888899999999887765               233356788899999763 


Q ss_pred             ceecCCC-cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-CCCEEE-EeeCCcEEEEEcCC-----
Q psy2305          71 SSIDGFT-SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-DGNKIY-AGFLSEVKIFSTDR-----  142 (334)
Q Consensus        71 ~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~-~~~d~~i~i~d~~~-----  142 (334)
                         -++. .+|++-....++.+|+..+|+......-...     ...|+.+.| |.+++. .++.|.+.+-+.-.     
T Consensus       121 ---rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-----iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~  192 (1062)
T KOG1912|consen  121 ---RDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-----ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPD  192 (1062)
T ss_pred             ---cCcchheeEEecCCcEEEEEEccCCceeeccccCCc-----ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCC
Confidence               3444 4566666778999999999998776553222     456688877 344444 44466665554321     


Q ss_pred             -CCCeeeeeccccccccc-------------------------ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe
Q psy2305         143 -PGRECVSRNLKPWFRKN-------------------------IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF  196 (334)
Q Consensus       143 -~~~~~~~~~~~~~~~~~-------------------------~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  196 (334)
                       +++..+.    ...|..                         ....++|+|.-+ .++.....+.+.++|++-..++..
T Consensus       193 ~pgk~~qI----~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~r-n~lfi~~prellv~dle~~~~l~v  267 (1062)
T KOG1912|consen  193 VPGKEFQI----TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWR-NILFITFPRELLVFDLEYECCLAV  267 (1062)
T ss_pred             CCceeEEE----ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhh-ceEEEEeccceEEEcchhhceeEE
Confidence             1111110    111110                         012356788877 444456788999999988888887


Q ss_pred             eccCCCCeEEEEEccCCc--EEEeeecCCCeEEEEEccC
Q psy2305         197 LKGHNGGITHLEFSSNGI--LLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       197 ~~~~~~~i~~~~~~~~~~--~l~~~~~~d~~i~iwd~~~  233 (334)
                      ..-..+.+.-+.+-|+++  .|+... .||.+.+|-.+.
T Consensus       268 vpier~~akfv~vlP~~~rd~LfclH-~nG~ltirvrk~  305 (1062)
T KOG1912|consen  268 VPIERGGAKFVDVLPDPRRDALFCLH-SNGRLTIRVRKE  305 (1062)
T ss_pred             EEeccCCcceeEeccCCCcceEEEEe-cCCeEEEEEeec
Confidence            766666666677777654  688888 899999996553

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.11  E-value=9.7e-08  Score=76.22  Aligned_cols=187  Identities=16%  Similarity=0.125  Sum_probs=113.3

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-eCCcEEEEEcCCCCCeeeeecccc
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      ++..+++++.++.|..||..+|+.+..+.......      ..... ++..++++ .++.+..+|..+ ++.........
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~------~~~~~-~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~  106 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS------GAPVV-DGGRVYVGTSDGSLYALDAKT-GKVLWSIYLTS  106 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG------SGEEE-ETTEEEEEETTSEEEEEETTT-SCEEEEEEE-S
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc------ceeee-cccccccccceeeeEecccCC-cceeeeecccc
Confidence            55667777889999999999999988877633211      11122 23445544 488999999887 66655411001


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCC----------eEEEEEccCCcEEEeeecCCC
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG----------ITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~~d~  224 (334)
                      ...............+. .++.+..++.|..+|+++|+.+.........          +..-....++ .++.++ .++
T Consensus       107 ~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~-~~g  183 (238)
T PF13360_consen  107 SPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS-GDG  183 (238)
T ss_dssp             SCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC-CTS
T ss_pred             ccccccccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEc-CCC
Confidence            00011112222222355 7888888999999999999988777553322          1122222345 666666 577


Q ss_pred             e-EEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         225 E-IICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       225 ~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      . +.+ |+.+ ++.+....    ...... ...+++..|+.++.++.|..||+++++
T Consensus       184 ~~~~~-d~~t-g~~~w~~~----~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  184 RVVAV-DLAT-GEKLWSKP----ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             SEEEE-ETTT-TEEEEEEC----SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             eEEEE-ECCC-CCEEEEec----CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            5 555 9987 55333222    111221 134677888888789999999999983

...

>KOG1912|consensus

Probab=99.08  E-value=2.8e-08  Score=86.64  Aligned_cols=245  Identities=17%  Similarity=0.183  Sum_probs=162.8

Q ss_pred             eEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccce---ecCC--CcE
Q psy2305           5 EDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSS---IDGF--TSY   79 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~s~~--~~~   79 (334)
                      .++.|+|.| ++|.|+. ..|.+-|..+.+.+              ..+. +|...|+.+.|.|...-   +||.  .-+
T Consensus        19 ~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~i--------------qsie-~h~s~V~~VrWap~~~p~~llS~~~~~ll   81 (1062)
T KOG1912|consen   19 NAADWSPSG-LIAYGSH-SLVSVVDSRSLQLI--------------QSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLL   81 (1062)
T ss_pred             cccccCccc-eEEEecC-ceEEEEehhhhhhh--------------hccc-cCccceeEEEeccCCCchhccCcccccee
Confidence            467889888 6777765 46888898888776              2444 45588999999884322   3432  335


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC---CCCE-EEEe-eCCcEEEEEcCCCCCeeeeecccc
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL---DGNK-IYAG-FLSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~-l~~~-~d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      ||++...|.|.+||+..+..+..++.+..     ++..++|-+   +.+. |++- +..++.+|+..+ |.....    .
T Consensus        82 iAsaD~~GrIil~d~~~~s~~~~l~~~~~-----~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt-G~k~Wk----~  151 (1062)
T KOG1912|consen   82 IASADISGRIILVDFVLASVINWLSHSND-----SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT-GEKFWK----Y  151 (1062)
T ss_pred             EEeccccCcEEEEEehhhhhhhhhcCCCc-----chhheeeeeccCcchheeEEecCCcEEEEEEccC-Cceeec----c
Confidence            77778889999999998888777776544     677888865   3433 3333 478999999998 555552    3


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-------CCceEeeccCCC------------C------------
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-------GRPLFFLKGHNG------------G------------  203 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~------------~------------  203 (334)
                      ........|+.+.|-....+..-+..|.+.+.+.--       ++..+.-..|..            .            
T Consensus       152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fit  231 (1062)
T KOG1912|consen  152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFIT  231 (1062)
T ss_pred             ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHH
Confidence            333456778999997665666666778777776521       222222222221            0            


Q ss_pred             -eEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         204 -ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       204 -i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                       ...++|+|.-+.++... ....+.++|++- ..++....-.........+-=.|+...|++.-.||.+.+|-.+.
T Consensus       232 y~a~faf~p~~rn~lfi~-~prellv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  232 YCAQFAFSPHWRNILFIT-FPRELLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             HHHhhhcChhhhceEEEE-eccceEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence             11356788766666666 688999999987 56666655443344454443334456889999999999997655

>KOG4714|consensus

Probab=99.08  E-value=3e-09  Score=80.74  Aligned_cols=194  Identities=14%  Similarity=0.084  Sum_probs=112.3

Q ss_pred             CCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee-----cCCeEEEEECCCCCceEee
Q psy2305         124 GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT-----YSKIIGLFSDSDGRPLFFL  197 (334)
Q Consensus       124 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~  197 (334)
                      ++.+++++ ||.+.+++.+..-+...+   ....|.+ -.+.++...+. .+.++.     .-+..+.|+++..+....-
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~---i~~~~~~-~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~  175 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSR---IPSIHSG-SASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPS  175 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhh---ccccccc-ccccceeeccc-EEecCCcceEeeccceeeeccccccccccc
Confidence            45677777 999999998741111111   1111211 11223333444 444332     2234556666543322211


Q ss_pred             ccCCCCeEEEEEccCCcE-EEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecC-CCceEEeeecCCcEEEEe
Q psy2305         198 KGHNGGITHLEFSSNGIL-LFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWN  275 (334)
Q Consensus       198 ~~~~~~i~~~~~~~~~~~-l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd  275 (334)
                      ......|.+++-+|..+. +++|+ .||.+-+||.+....+...+..|  ...+..+-|+| ++..|+++++||.+..||
T Consensus       176 ~~~~~~v~~l~~hp~qq~~v~cgt-~dg~~~l~d~rn~~~p~S~l~ah--k~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  176 KKALDAVTALCSHPAQQHLVCCGT-DDGIVGLWDARNVAMPVSLLKAH--KAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             ccccccchhhhCCcccccEEEEec-CCCeEEEEEcccccchHHHHHHh--hhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            222334889999997654 55566 89999999999855555666666  56677788999 568899999999999999


Q ss_pred             CCCCCCCCCCCcc--------cccccc----ceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         276 VNTSNLPSSPYEE--------SVQEPL----YKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       276 ~~~~~~~~~~~~~--------~~~~~~----~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ..+.-+-.+++..        .+.+..    ..+......|+++..    .|    ..|++|++-+.|+.
T Consensus       253 as~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV----~g----~~lVcgtd~eaIyl  314 (319)
T KOG4714|consen  253 ASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV----LG----PCLVCGTDAEAIYL  314 (319)
T ss_pred             CCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec----cC----ceEEeccccceEEE
Confidence            8854322222221        001111    111112224555555    67    77999988877764

>KOG0309|consensus

Probab=99.08  E-value=2.3e-09  Score=92.73  Aligned_cols=199  Identities=14%  Similarity=0.218  Sum_probs=139.1

Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCCCC-eeeEEEcCccccccccceeEEEEcCCC--C-EEEEeeCCcEEEEEcCCCCCe
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSVGG-EIKATYRPYNQVDEVTHAYSLAFSLDG--N-KIYAGFLSEVKIFSTDRPGRE  146 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~--~-~l~~~~d~~i~i~d~~~~~~~  146 (334)
                      ++++|.|+-++.+++-| +.+-|+... ..-+-+.   |.... .|..+.|+|..  . .+++.+...-.+|++......
T Consensus        30 ~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~---h~tpw-~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~  104 (1081)
T KOG0309|consen   30 VSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH---HITPW-QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN  104 (1081)
T ss_pred             eeeccccchhhhhhhcC-eEEEeccCCCCCceeee---ccCcc-hhcceecccCCCCceeEEecCcchhhhhhhhcCCcc
Confidence            44578888899988877 455566532 2222221   11111 56778888764  2 344555666778998754333


Q ss_pred             eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCe
Q psy2305         147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCE  225 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~  225 (334)
                      ....  .+.+|...++.+.|+|+.+..+++++.|-.+..||+++. .++..+..-......++|+-....+++.+ ..+.
T Consensus       105 aIef--~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass-hg~~  181 (1081)
T KOG0309|consen  105 AIEF--VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS-HGND  181 (1081)
T ss_pred             ceEE--EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc-cCCc
Confidence            2221  568899999999999998889999999999999999886 45666655555667899987544555556 6889


Q ss_pred             EEEEEccCCCccceeecccccCCceEEEEecC-CCceEEeeecCCcEEEEeCCCC
Q psy2305         226 IICWDLRNPGCILHTFPRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       226 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      |++||.+..+.++..++++  ...+..++|.. ....+.+.+.||+|++||....
T Consensus       182 i~vwd~r~gs~pl~s~K~~--vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  182 IFVWDLRKGSTPLCSLKGH--VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             eEEEeccCCCcceEEeccc--ceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence            9999999988888888875  33444555543 2346778889999999998765

>KOG1832|consensus

Probab=99.06  E-value=2.5e-10  Score=100.44  Aligned_cols=213  Identities=12%  Similarity=0.081  Sum_probs=144.1

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .-+|++|+-+.++|+.|+..|.|++|++.++...              ... ..|+.+|+-+.-       +.+|..+++
T Consensus      1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--------------~s~-ncH~SavT~veP-------s~dgs~~Lt 1160 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--------------ESV-NCHQSAVTLVEP-------SVDGSTQLT 1160 (1516)
T ss_pred             ceeeEEeecCCceEEeeeccceEEEEEccCcccc--------------ccc-cccccccccccc-------cCCcceeee
Confidence            4589999999999999999999999999999875              222 345667766554       558877766


Q ss_pred             eeCCC--cEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          83 SSMYA--PIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        83 ~~~d~--~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      .+.-.  ...+|++.+ +.....|.         .-.++.|+.....-+.|. .....+||+++ +..+........+..
T Consensus      1161 sss~S~PlsaLW~~~s~~~~~Hsf~---------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT-~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTGGPRHSFD---------EDKAVKFSNSLQFRALGTEADDALLYDVQT-CSPLQTYLTDTVTSS 1230 (1516)
T ss_pred             eccccCchHHHhccccccCcccccc---------ccceeehhhhHHHHHhcccccceEEEeccc-CcHHHHhcCcchhhh
Confidence            55433  467899754 33344443         345888988755555554 56789999998 444442100111122


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      ..-++..|+|+.. +++   .||  .+||.+..+.++.|......+ .=.|+|+|..++..+      .|||+++ .+.+
T Consensus      1231 y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS------EIwD~RT-F~lL 1296 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCDT-LIL---NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS------EIWDMRT-FKLL 1296 (1516)
T ss_pred             hhccccccCCCcc-eEe---eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec------hhhhhHH-HHHH
Confidence            2336789999998 665   344  689999998888886554332 345999999998887      3899998 4544


Q ss_pred             eeecccccCCceEEEEecCCCceEEee
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSG  265 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~  265 (334)
                      +...    .-.-..+.|+..|..++..
T Consensus      1297 h~VP----~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1297 HSVP----SLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             hcCc----cccceEEEeccCccchhhh
Confidence            4433    3334557788888776543

>KOG4190|consensus

Probab=99.04  E-value=7.1e-10  Score=92.85  Aligned_cols=163  Identities=15%  Similarity=0.119  Sum_probs=112.8

Q ss_pred             ceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeec--ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC
Q psy2305         114 HAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRN--LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD  190 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  190 (334)
                      .|..++--.+.+-+++++ |++|++|.++..+.......  .++..|+.+|.++.|-.+-+ .++++  ||.|++||.--
T Consensus       737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~giHlWDPFi  813 (1034)
T KOG4190|consen  737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DGGIHLWDPFI  813 (1034)
T ss_pred             HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cCcceeecccc
Confidence            555555444555667666 99999999987544332111  15788999999999999987 77654  89999999877


Q ss_pred             CCceEeec--cCCCCeEEEEEcc--CCcEEEeeecCCCeEEEEEccCCCccceeecc---cccCCceEEEEecCCCceEE
Q psy2305         191 GRPLFFLK--GHNGGITHLEFSS--NGILLFSGARKDCEIICWDLRNPGCILHTFPR---QVSTNQRVYFDLTSCSNYLL  263 (334)
Q Consensus       191 ~~~~~~~~--~~~~~i~~~~~~~--~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~  263 (334)
                      ++++..+.  ...+.+..+..-|  +...+..++....+++++|.+. ..-...++-   ......+.+++..+.|++++
T Consensus       814 gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRs-ce~~~E~kVcna~~Pna~~R~iaVa~~GN~lA  892 (1034)
T KOG4190|consen  814 GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARS-CEWTCELKVCNAPGPNALTRAIAVADKGNKLA  892 (1034)
T ss_pred             cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccc-ccceeeEEeccCCCCchheeEEEeccCcchhh
Confidence            76665432  1223333444444  3445555532789999999997 443333332   22234567788899999999


Q ss_pred             eeecCCcEEEEeCCCCC
Q psy2305         264 SGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       264 ~~~~dg~i~iwd~~~~~  280 (334)
                      ++-.+|.|.+.|.++|+
T Consensus       893 a~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  893 AALSNGCIAILDARNGK  909 (1034)
T ss_pred             HHhcCCcEEEEecCCCc
Confidence            99999999999999984

>KOG0882|consensus

Probab=99.03  E-value=1e-08  Score=83.83  Aligned_cols=238  Identities=12%  Similarity=0.094  Sum_probs=156.1

Q ss_pred             CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC-CCcEE
Q psy2305          12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM-YAPIH   90 (334)
Q Consensus        12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~-d~~i~   90 (334)
                      -.+++.+++.||.++.|.-..-.-..           ....++. |...|.+       ++.+.++.++.+.+. |..++
T Consensus        19 ka~fiiqASlDGh~KFWkKs~isGvE-----------fVKhFra-HL~~I~s-------l~~S~dg~L~~Sv~d~Dhs~K   79 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRISGVE-----------FVKHFRA-HLGVILS-------LAVSYDGWLFRSVEDPDHSVK   79 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCcccee-----------ehhhhHH-HHHHHHh-------hhccccceeEeeccCccccee
Confidence            45689999999999999865422210           1112222 3344433       344779988999777 99999


Q ss_pred             EEeCCCCeeeEEEcCccccccccceeEEEEcCCC--CEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEE
Q psy2305          91 LWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG--NKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAI  166 (334)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (334)
                      ++|+++-..+.-++...-   + ...+...++..  ..++++.  ++.+.++|-.....+...   ...-|..+|.++.+
T Consensus        80 vfDvEn~DminmiKL~~l---P-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~---fkklH~sPV~~i~y  152 (558)
T KOG0882|consen   80 VFDVENFDMINMIKLVDL---P-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY---FKKLHFSPVKKIRY  152 (558)
T ss_pred             EEEeeccchhhhcccccC---C-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce---ecccccCceEEEEe
Confidence            999987555433332111   0 11122223221  2455443  799999998753333322   34668999999999


Q ss_pred             cCCCCcEEEEeecCCeEEEEECCC------CCceEe---------eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305         167 NPVHPDICALGTYSKIIGLFSDSD------GRPLFF---------LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL  231 (334)
Q Consensus       167 ~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~---------~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~  231 (334)
                      +|.+. .+++....|.|..|....      .+....         +........++.|+|+|..+.+-+ .|..|+++++
T Consensus       153 ~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-~DrkVR~F~~  230 (558)
T KOG0882|consen  153 NQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-PDRKVRGFVF  230 (558)
T ss_pred             ecccc-ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-cccEEEEEEe
Confidence            99999 888888899999999762      111111         122345678999999999999999 8999999999


Q ss_pred             cCCCccceeec--------------------------------ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         232 RNPGCILHTFP--------------------------------RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       232 ~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .+ ++.++.+.                                .+ .......+.|...|++|+.++.=| |++.++.++
T Consensus       231 Kt-GklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~-~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn  307 (558)
T KOG0882|consen  231 KT-GKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH-GSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN  307 (558)
T ss_pred             cc-chhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh-cCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence            87 55443332                                11 111223456888999999988766 888888876


Q ss_pred             C
Q psy2305         280 N  280 (334)
Q Consensus       280 ~  280 (334)
                      .
T Consensus       308 ~  308 (558)
T KOG0882|consen  308 T  308 (558)
T ss_pred             e
Confidence            3

>KOG2066|consensus

Probab=98.98  E-value=6.9e-08  Score=84.57  Aligned_cols=182  Identities=9%  Similarity=0.032  Sum_probs=126.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      |++.|++++  +++|+-|+.+|.|++++....-..               .+.  |...             ..+|.+++
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~~---------------~~~--~s~~-------------~~~Gey~a   87 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNPKT---------------NFD--HSSS-------------ILEGEYVA   87 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCcccc---------------ccc--cccc-------------ccCCceEE
Confidence            455666665  578999999999999998765311               111  1111             34899999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC-----CCEEEEee-CCcEEEEEcCCCCCeeeeeccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD-----GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      +|+.||.|.|-.+-+.+....+..+.      ++.+++++|+     .+.+++|+ .| +.++.-+--+.....   ...
T Consensus        88 sCS~DGkv~I~sl~~~~~~~~~df~r------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v---~l~  157 (846)
T KOG2066|consen   88 SCSDDGKVVIGSLFTDDEITQYDFKR------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV---VLS  157 (846)
T ss_pred             EecCCCcEEEeeccCCccceeEecCC------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce---eee
Confidence            99999999999888887766665433      8899999998     46788887 55 777765432322221   345


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCe------EEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGI------THLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i------~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                      ...++|.++.|..+   ++|-++.+| |++||+.+.+.+..++.....+      ..+.|.++.+ |+.|  ...+|+|.
T Consensus       158 ~~eG~I~~i~W~g~---lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG--W~d~v~i~  230 (846)
T KOG2066|consen  158 EGEGPIHSIKWRGN---LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG--WGDSVKIC  230 (846)
T ss_pred             cCccceEEEEecCc---EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe--cCCeEEEE
Confidence            66789999999755   888887554 8999998888777665433332      3577876654 4444  35678888


Q ss_pred             Ecc
Q psy2305         230 DLR  232 (334)
Q Consensus       230 d~~  232 (334)
                      .++
T Consensus       231 ~I~  233 (846)
T KOG2066|consen  231 SIK  233 (846)
T ss_pred             EEe
Confidence            887

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.97  E-value=3.3e-07  Score=78.30  Aligned_cols=177  Identities=13%  Similarity=0.039  Sum_probs=108.2

Q ss_pred             cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee----C-CcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          88 PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----L-SEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        88 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      .+.+-|.. +.....+.....     .+..-+|+|+++.++...    . ..+.++++++.......   ...   +.-.
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~-----~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~---~~~---g~~~  241 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGS-----LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL---NFN---GNNG  241 (425)
T ss_pred             eEEEEccC-CcceeEecccCc-----ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee---ccC---CccC
Confidence            34444433 444444443233     667789999998877432    2 35889999874333322   223   3344


Q ss_pred             EEEEcCCCCcEEEEeecCCe--EEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         163 AIAINPVHPDICALGTYSKI--IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      ..+|+|||+.++++...||.  |+++|+..+. ...+....+.-..-.|+|||++|+..+...|.-.||-....+.....
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r  320 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR  320 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence            56899999955556666665  6677776665 34455444444578899999999888745666555555443444455


Q ss_pred             ecccccCCceEEEEecCCCceEEeeec-CCc--EEEEeCCCC
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNT-NGD--LSIWNVNTS  279 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~--i~iwd~~~~  279 (334)
                      +........  .-.|+|||++++..+. +|.  |.+.|+.++
T Consensus       321 iT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~  360 (425)
T COG0823         321 LTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASG  360 (425)
T ss_pred             eeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence            544322222  4568999999987664 344  666666665

>KOG2114|consensus

Probab=98.96  E-value=4.7e-07  Score=80.14  Aligned_cols=194  Identities=11%  Similarity=0.105  Sum_probs=127.1

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccc-eeEEEEcCCCCEEEEee-C-C----cEEEEEcCCCC--
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTH-AYSLAFSLDGNKIYAGF-L-S----EVKIFSTDRPG--  144 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-d-~----~i~i~d~~~~~--  144 (334)
                      ++.+..++.|+.+|.|.+.+- .-+.+..++.+.+     . |..+....+..+|++-. | +    .+++|+++...  
T Consensus        32 ~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~-----siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   32 SSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQ-----SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             cCCCceEEEeeccccEEEecc-cceeeehheecch-----hhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            678889999999999988873 4445577776655     4 44444444445676543 3 3    69999998631  


Q ss_pred             C--eee----eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC----CCceEeeccCCCCeEEEEEccCCc
Q psy2305         145 R--ECV----SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD----GRPLFFLKGHNGGITHLEFSSNGI  214 (334)
Q Consensus       145 ~--~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~  214 (334)
                      .  .+.    ..+........++.+++.+.+-+ .+|+|-.+|.|.++.-.-    +....-......+|+++++..+++
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~  184 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK  184 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence            1  111    11111222467889999999988 999999999999986421    222222233567999999999998


Q ss_pred             EEEeeecCCCeEEEEEccCCCccce-eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         215 LLFSGARKDCEIICWDLRNPGCILH-TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .++... ....|.+|.+.. ..+.. .+..+  +....+..+++....+++++ +..+.+|+....
T Consensus       185 s~lFv~-Tt~~V~~y~l~g-r~p~~~~ld~~--G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  185 SVLFVA-TTEQVMLYSLSG-RTPSLKVLDNN--GISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR  245 (933)
T ss_pred             eeEEEE-ecceeEEEEecC-CCcceeeeccC--CccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence            744444 467899999985 33333 34433  66677777777655466555 346999998875

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.95  E-value=2.5e-06  Score=69.11  Aligned_cols=247  Identities=11%  Similarity=0.064  Sum_probs=143.5

Q ss_pred             EEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305           6 DVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~   75 (334)
                      .+..+||++.+++++          +.-.|.+||..+.....              .+..........+ -.+..++++.
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~--------------EI~iP~k~R~~~~-~~~~~~~ls~  104 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG--------------EIEIPPKPRAQVV-PYKNMFALSA  104 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE--------------EEEETTS-B--BS---GGGEEE-T
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc--------------eEecCCcchheec-ccccceEEcc
Confidence            467899999888753          34579999999887652              2222211011111 1345567789


Q ss_pred             CCcEEEEee--CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc
Q psy2305          76 FTSYFLCSS--MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        76 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      |++++++..  --..|.|.|++.++.+..+....       +..+--+++..+...|.||.+.-..+...++........
T Consensus       105 dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-------C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~  177 (342)
T PF06433_consen  105 DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-------CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKV  177 (342)
T ss_dssp             TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-------EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEE
T ss_pred             CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-------EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccc
Confidence            999988764  44579999999999988886533       233322333345556679999999999767765432111


Q ss_pred             ccccccce-EEEEEcCCCCcEEEEeecCCeEEEEECCCCCce--Eeecc----------CCCCeEEEEEccCCcEEEeee
Q psy2305         154 PWFRKNIV-SAIAINPVHPDICALGTYSKIIGLFSDSDGRPL--FFLKG----------HNGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       154 ~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~----------~~~~i~~~~~~~~~~~l~~~~  220 (334)
                      +.....++ ..-++...+. .++.-+.+|.|+-.|+......  ..+.-          ..+.-.-+++++....|++.-
T Consensus       178 F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  178 FDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             SSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             cCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence            22222222 2334455554 5666788999999998654321  11110          012233477777665555432


Q ss_pred             c-------CCC--eEEEEEccCCCccceeecccccCCceEEEEecCCCc-eEEee-ecCCcEEEEeCCCC
Q psy2305         221 R-------KDC--EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSG-NTNGDLSIWNVNTS  279 (334)
Q Consensus       221 ~-------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~-~~dg~i~iwd~~~~  279 (334)
                      .       .|+  .|.++|+.+ ++.+.++...   ..+.+++.+.+.+ +|++. ..++.+.+||..++
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTT-TEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             cCCCCCCccCCceEEEEEECCC-CeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            0       122  367777777 6666666632   3354677777665 55444 45789999999998

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.95  E-value=1.7e-06  Score=74.48  Aligned_cols=263  Identities=12%  Similarity=0.067  Sum_probs=145.5

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW   92 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw   92 (334)
                      +..++.++.+|.+.-+|.++++..-              ...  ....+.+   .|   .+  .+..++.+..++.+.-+
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W--------------~~~--~~~~~~s---sP---~v--~~~~v~v~~~~g~l~al  175 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAW--------------QTK--VAGEALS---RP---VV--SDGLVLVHTSNGMLQAL  175 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcc--------------ccc--CCCceec---CC---EE--ECCEEEEECCCCEEEEE
Confidence            4567778889999999999988652              111  1111111   11   01  23456667778999999


Q ss_pred             eCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-eCCcEEEEEcCCCCCeeeeeccccc-c-cc-cceEEEEEcC
Q psy2305          93 DSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPGRECVSRNLKPW-F-RK-NIVSAIAINP  168 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~-~-~~-~~v~~~~~~~  168 (334)
                      |.++|+.+..+.............+-... ++ .++.+ .++.+..+|..+ ++.......... + +. .....+..+|
T Consensus       176 d~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~-~v~~~~~~g~v~a~d~~~-G~~~W~~~~~~~~~~~~~~~~~~~~~sP  252 (394)
T PRK11138        176 NESDGAVKWTVNLDVPSLTLRGESAPATA-FG-GAIVGGDNGRVSAVLMEQ-GQLIWQQRISQPTGATEIDRLVDVDTTP  252 (394)
T ss_pred             EccCCCEeeeecCCCCcccccCCCCCEEE-CC-EEEEEcCCCEEEEEEccC-ChhhheeccccCCCccchhcccccCCCc
Confidence            99999998777642110000000011111 23 34444 488898888876 544332110000 0 00 0001111112


Q ss_pred             --CCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccccc
Q psy2305         169 --VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS  246 (334)
Q Consensus       169 --~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  246 (334)
                        .+. .++.++.+|.+..+|..+++.+-...-  +....+.  ..+..|+.++ .++.+..+|..+ ++.+....... 
T Consensus       253 ~v~~~-~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~-~~g~l~ald~~t-G~~~W~~~~~~-  324 (394)
T PRK11138        253 VVVGG-VVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVD-QNDRVYALDTRG-GVELWSQSDLL-  324 (394)
T ss_pred             EEECC-EEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEc-CCCeEEEEECCC-CcEEEcccccC-
Confidence              233 566677899999999999987655431  1111222  2455777788 799999999987 65544332110 


Q ss_pred             CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccc-eeeeccCCCcccceeeEEee
Q psy2305         247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN-GVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       247 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~s~~~~~~~~~l~t~  325 (334)
                      .....+...  .+.+|+.++.+|.++..|..++            +.+.........+. ...+    .+    ..|+.+
T Consensus       325 ~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG------------~~~~~~~~~~~~~~s~P~~----~~----~~l~v~  382 (394)
T PRK11138        325 HRLLTAPVL--YNGYLVVGDSEGYLHWINREDG------------RFVAQQKVDSSGFLSEPVV----AD----DKLLIQ  382 (394)
T ss_pred             CCcccCCEE--ECCEEEEEeCCCEEEEEECCCC------------CEEEEEEcCCCcceeCCEE----EC----CEEEEE
Confidence            011111111  2556778889999999999998            45544433222222 2233    34    468888


Q ss_pred             ecceeee
Q psy2305         326 SGQITNV  332 (334)
Q Consensus       326 ~~d~~i~  332 (334)
                      +.||.++
T Consensus       383 t~~G~l~  389 (394)
T PRK11138        383 ARDGTVY  389 (394)
T ss_pred             eCCceEE
Confidence            9999876

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.94  E-value=1.3e-06  Score=76.42  Aligned_cols=188  Identities=7%  Similarity=-0.005  Sum_probs=120.2

Q ss_pred             eecCCCcEEEEe-eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C----CcEEEEEcCCCCC
Q psy2305          72 SIDGFTSYFLCS-SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L----SEVKIFSTDRPGR  145 (334)
Q Consensus        72 ~~s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~  145 (334)
                      -++|||+.+... -..+.+.+.|.++.+...++....      ....++++|+|+++++.+ +    .++...+... ..
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e-~d  271 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE-RD  271 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC------CcccceECCCCCEEEEeccCcccCcceeeecccc-Cc
Confidence            346788765433 345678888998888777766533      446789999999998653 2    3343333322 11


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-----CCceEeeccCCCCeEEEEEccCCcEEEeee
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-----GRPLFFLKGHNGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  220 (334)
                      .+...  ....      .-++.++|+ +...+  ++.|.+.|.++     .+.+..+. -......+.++|||+++++++
T Consensus       272 ~~vvf--ni~~------iea~vkdGK-~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVan  339 (635)
T PRK02888        272 WVVVF--NIAR------IEEAVKAGK-FKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANG  339 (635)
T ss_pred             eEEEE--chHH------HHHhhhCCC-EEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeC
Confidence            11100  0000      013456787 55543  67899999988     34444444 445568899999999998887


Q ss_pred             cCCCeEEEEEccCCCccc-------eeeccc-ccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         221 RKDCEIICWDLRNPGCIL-------HTFPRQ-VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       221 ~~d~~i~iwd~~~~~~~~-------~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      ..+.++.+.|+.+....+       ..+... ..+...+..+|.++|....+-..|..|..||+..
T Consensus       340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            579999999998622210       111111 1133345678999998888888899999999886

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.92  E-value=3.5e-06  Score=71.28  Aligned_cols=269  Identities=13%  Similarity=0.070  Sum_probs=142.8

Q ss_pred             cCCCcEEEEe---------eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305          10 APDGTCLLTN---------SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus        10 sp~~~~l~~~---------~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      |||+++++..         +..+.+.|||+.+++..               .+... ...+....|       ||+|+.+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~---------------~l~~~-~~~~~~~~~-------sP~g~~~   57 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT---------------PLTPP-PPKLQDAKW-------SPDGKYI   57 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE---------------ESS-E-ETTBSEEEE--------SSSTEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE---------------ECcCC-cccccccee-------ecCCCee
Confidence            6899988774         23467999999998764               12211 244555555       7799999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCcccc------------cc-ccceeEEEEcCCCCEEEEee--CCcEEEEEcC---C
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQV------------DE-VTHAYSLAFSLDGNKIYAGF--LSEVKIFSTD---R  142 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------------~~-~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~---~  142 (334)
                      +... ++.|.+++..+++..+.-. .+..            ++ ...-..+.||||+++|+...  +..|..+.+.   .
T Consensus        58 ~~v~-~~nly~~~~~~~~~~~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~  135 (353)
T PF00930_consen   58 AFVR-DNNLYLRDLATGQETQLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSP  135 (353)
T ss_dssp             EEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESS
T ss_pred             EEEe-cCceEEEECCCCCeEEecc-ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCC
Confidence            8885 6789999987775443222 1100            00 11336789999999999653  4444443321   1


Q ss_pred             CCC---eeeeecc-----------------------------cccccccceEEEEEcCCCCcEEEEeecC-----CeEEE
Q psy2305         143 PGR---ECVSRNL-----------------------------KPWFRKNIVSAIAINPVHPDICALGTYS-----KIIGL  185 (334)
Q Consensus       143 ~~~---~~~~~~~-----------------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i  185 (334)
                      ...   .......                             ........+..+.|.+++. .|+..-.+     ..+.+
T Consensus       136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~-~l~~~~~nR~q~~~~l~~  214 (353)
T PF00930_consen  136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK-RLWVQWLNRDQNRLDLVL  214 (353)
T ss_dssp             STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE-EEEEEEEETTSTEEEEEE
T ss_pred             ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc-EEEEEEcccCCCEEEEEE
Confidence            000   0110000                             0112234577888999887 45544333     24777


Q ss_pred             EECCCCCceEeecc-CCCCe---EEEEEc-cCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceE-EEEecCCC
Q psy2305         186 FSDSDGRPLFFLKG-HNGGI---THLEFS-SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRV-YFDLTSCS  259 (334)
Q Consensus       186 ~d~~~~~~~~~~~~-~~~~i---~~~~~~-~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~  259 (334)
                      +|..+++....+.. ..+.|   ....|. +++..++..+..+|.-.||-+...+.....+...  .-.+. -+.+++++
T Consensus       215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G--~~~V~~i~~~d~~~  292 (353)
T PF00930_consen  215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG--DWEVTSILGWDEDN  292 (353)
T ss_dssp             EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S--SS-EEEEEEEECTS
T ss_pred             EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC--ceeecccceEcCCC
Confidence            88877755433321 22222   245554 6665544444368876666665544444444432  23342 35678887


Q ss_pred             ceEE-eeecC--C--cEEEEeCC-CCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEee
Q psy2305         260 NYLL-SGNTN--G--DLSIWNVN-TSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       260 ~~l~-~~~~d--g--~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~  325 (334)
                      +.|+ ++..+  +  .|..-++. .+             .+..+....+.-..+.|  ||++    ++++-.
T Consensus       293 ~~iyf~a~~~~p~~r~lY~v~~~~~~-------------~~~~LT~~~~~~~~~~~--Spdg----~y~v~~  345 (353)
T PF00930_consen  293 NRIYFTANGDNPGERHLYRVSLDSGG-------------EPKCLTCEDGDHYSASF--SPDG----KYYVDT  345 (353)
T ss_dssp             SEEEEEESSGGTTSBEEEEEETTETT-------------EEEESSTTSSTTEEEEE---TTS----SEEEEE
T ss_pred             CEEEEEecCCCCCceEEEEEEeCCCC-------------CeEeccCCCCCceEEEE--CCCC----CEEEEE
Confidence            6554 44432  2  45555566 32             33444433332258999  9999    776543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1920|consensus

Probab=98.92  E-value=1.3e-06  Score=80.31  Aligned_cols=246  Identities=11%  Similarity=0.021  Sum_probs=142.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      |-|.++.|-.++..++.+...|.|.+-|..+....                +.+.-...|.+++|       |||++.++
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----------------ivg~vd~GI~aasw-------S~Dee~l~  125 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE----------------IVGNVDNGISAASW-------SPDEELLA  125 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee----------------eeeeccCceEEEee-------cCCCcEEE
Confidence            35788888888888888889999999988777653                33444567888888       77999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      ..+..+++.+-+ .+-..+..-..+......+....+-|-...+.+ -|+.|.....+.....+...     .......=
T Consensus       126 liT~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs~gr~~~~~~~~~ek~~~-----~~~~~~~~  198 (1265)
T KOG1920|consen  126 LITGRQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKETQF-RGSEGRQAARQKIEKEKALE-----QIEQDDHK  198 (1265)
T ss_pred             EEeCCcEEEEEe-ccccchhccccccccccccccceecccccceee-ecchhhhccccccccccccc-----chhhccCC
Confidence            998887776643 233322221111111111122233333222111 12222222222211111000     00112233


Q ss_pred             EEEEEcCCCCcEEEEe-----ecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec--CCCeEEEEEccCC
Q psy2305         162 SAIAINPVHPDICALG-----TYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR--KDCEIICWDLRNP  234 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~~i~iwd~~~~  234 (334)
                      +.+.|--||+ ++|+.     ...+.|++||.+ +..-..-....+.-.+++|-|.|..+++-..  .|+.|.++.-+..
T Consensus       199 ~~IsWRgDg~-~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  199 TSISWRGDGE-YFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             ceEEEccCCc-EEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence            5789999999 88873     223789999975 4433222223334457999999999887541  3567888876631


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEe---eecCCcEEEEeCCCC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLS---GNTNGDLSIWNVNTS  279 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~---~~~dg~i~iwd~~~~  279 (334)
                      ..-...+........+..++|+.++..|+.   ......|++|-+.+.
T Consensus       277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence            111122222222344788999999999987   444556999987764

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.90  E-value=5.9e-09  Score=57.15  Aligned_cols=38  Identities=32%  Similarity=0.624  Sum_probs=36.1

Q ss_pred             CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         192 RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       192 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                      +++.++.+|.+.|.+++|+|++.+|++++ .|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGS-SDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence            56788999999999999999999999999 899999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695|consensus

Probab=98.89  E-value=7.2e-09  Score=81.87  Aligned_cols=152  Identities=16%  Similarity=0.250  Sum_probs=110.9

Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++.+.+..|-+-|+++|... .|... .     .|.++.|...+++++.|. +|.|..+|++... .-...+....-|..
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~sk-s-----DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn-qG~~~~a~rlyh~S  299 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQSK-S-----DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN-QGNGWCAQRLYHDS  299 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccccc-h-----hHHHHHhcccCCeeEecccCCcEEEEEeeecc-cCCCcceEEEEcCc
Confidence            44455667888888877543 34321 2     788999999889999887 9999999998631 10000003455888


Q ss_pred             ceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCc---eEeeccCCCCeEEEE--EccCCcEEEeeecCCCeEEEEEccC
Q psy2305         160 IVSAIAINP-VHPDICALGTYSKIIGLFSDSDGRP---LFFLKGHNGGITHLE--FSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       160 ~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~--~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      .|+++..-. +++ +|++.+.+|+|.+||++--++   ++++.+|...-..+-  ..+....+++++ .|...+||.++.
T Consensus       300 svtslq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-dDcytRiWsl~~  377 (425)
T KOG2695|consen  300 SVTSLQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-DDCYTRIWSLDS  377 (425)
T ss_pred             chhhhhhhccccc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-CeeEEEEEeccc
Confidence            999998877 666 888889999999999987666   888888865443333  345566788888 899999999998


Q ss_pred             CCccceeecc
Q psy2305         234 PGCILHTFPR  243 (334)
Q Consensus       234 ~~~~~~~~~~  243 (334)
                       +..+.++..
T Consensus       378 -ghLl~tipf  386 (425)
T KOG2695|consen  378 -GHLLCTIPF  386 (425)
T ss_pred             -CceeeccCC
Confidence             777777654

>KOG1832|consensus

Probab=98.84  E-value=2.5e-09  Score=94.42  Aligned_cols=181  Identities=17%  Similarity=0.200  Sum_probs=131.5

Q ss_pred             cceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--C-CcEEEEEcCCCCCe
Q psy2305          70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--L-SEVKIFSTDRPGRE  146 (334)
Q Consensus        70 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~  146 (334)
                      +++|+.+.++|++|+..|.|+++++.+|.......+|+.     +|+.+.-+.||..+++.+  . --..+|++...+..
T Consensus      1106 c~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-----avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~ 1180 (1516)
T KOG1832|consen 1106 CIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-----AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGP 1180 (1516)
T ss_pred             eEEeecCCceEEeeeccceEEEEEccCcccccccccccc-----ccccccccCCcceeeeeccccCchHHHhccccccCc
Confidence            455688999999999999999999999999888888776     899999999998887553  3 36789999863333


Q ss_pred             eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-cc---CCCCeEEEEEccCCcEEEeeecC
Q psy2305         147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-KG---HNGGITHLEFSSNGILLFSGARK  222 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~---~~~~i~~~~~~~~~~~l~~~~~~  222 (334)
                      ..    .+    ..-.++.|+..-. .-+.|+......+||++++.+..++ .+   ....-....|+|+.++++-    
T Consensus      1181 ~H----sf----~ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---- 1247 (1516)
T KOG1832|consen 1181 RH----SF----DEDKAVKFSNSLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---- 1247 (1516)
T ss_pred             cc----cc----cccceeehhhhHH-HHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee----
Confidence            32    12    2345788887755 5566777788999999999877663 21   1122257889999988763    


Q ss_pred             CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ||  .+||.+. ...++.|....  .... -.|+|.|..++.-+     .|||+++-
T Consensus      1248 dG--vLWDvR~-~~aIh~FD~ft--~~~~-G~FHP~g~eVIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1248 DG--VLWDVRI-PEAIHRFDQFT--DYGG-GGFHPSGNEVIINS-----EIWDMRTF 1293 (1516)
T ss_pred             Cc--eeeeecc-HHHHhhhhhhe--eccc-ccccCCCceEEeec-----hhhhhHHH
Confidence            44  4799998 45566665432  2222 24899999988765     38999886

>KOG1275|consensus

Probab=98.84  E-value=1.3e-07  Score=84.09  Aligned_cols=183  Identities=12%  Similarity=0.062  Sum_probs=131.9

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      ++..++.|+-...+..+|+.+.+..+.......     .|.-|+  .+++++++|. .|+|.+-|.++ -+.+.    ++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-----~v~imR--~Nnr~lf~G~t~G~V~LrD~~s-~~~ih----t~  213 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS-----GVTIMR--YNNRNLFCGDTRGTVFLRDPNS-FETIH----TF  213 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCC-----ceEEEE--ecCcEEEeecccceEEeecCCc-Cceee----ee
Confidence            445677777677788889988877766554322     344444  4578888998 89999999986 44444    68


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecC---------CeEEEEECCCCCceEeeccCCCCeEEEEEccCC-cEEEeeecCCC
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYS---------KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG-ILLFSGARKDC  224 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~  224 (334)
                      ..|.+.+..+..  .|+ +|++++..         .-|++||++..+.+..+.-+.++ .-+.|+|.- ..+++++ ..|
T Consensus       214 ~aHs~siSDfDv--~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S-~sG  288 (1118)
T KOG1275|consen  214 DAHSGSISDFDV--QGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS-QSG  288 (1118)
T ss_pred             eccccceeeeec--cCC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe-ccc
Confidence            899999987665  455 88887654         45889999987766665544443 457788853 4677777 799


Q ss_pred             eEEEEEccCCCcc-ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305         225 EIICWDLRNPGCI-LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN  275 (334)
Q Consensus       225 ~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  275 (334)
                      ...+-|......+ ...+.-+.....+..+++|++|+.++.|..+|.|.+|.
T Consensus       289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            9999995432333 33333344455688999999999999999999999997

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.84  E-value=5.8e-06  Score=71.21  Aligned_cols=236  Identities=12%  Similarity=0.048  Sum_probs=130.6

Q ss_pred             CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEE
Q psy2305          12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHL   91 (334)
Q Consensus        12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~i   91 (334)
                      .+..+++++.++.|.-+|..+++..-........     ..+.......+   .-.   ..  -++..++.++.++.+.-
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-----~~~~~~~~~~~---~~~---~~--v~~~~v~v~~~~g~l~a  134 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKD-----GWFSKNKSALL---SGG---VT--VAGGKVYIGSEKGQVYA  134 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc-----ccccccccccc---ccc---cE--EECCEEEEEcCCCEEEE
Confidence            3557778888899999999988865322111100     00000000000   000   01  13455677788999999


Q ss_pred             EeCCCCeeeEEEcCccccccccceeE-EEEcCCCCEEEEe-eCCcEEEEEcCCCCCeeeeecccccccc-cceEEEEEcC
Q psy2305          92 WDSVGGEIKATYRPYNQVDEVTHAYS-LAFSLDGNKIYAG-FLSEVKIFSTDRPGRECVSRNLKPWFRK-NIVSAIAINP  168 (334)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~  168 (334)
                      +|.++|+.+...+....      +.+ ... .++ .++.+ .++.+..+|..+ ++............. ......... 
T Consensus       135 ld~~tG~~~W~~~~~~~------~~ssP~v-~~~-~v~v~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~~sP~v~-  204 (394)
T PRK11138        135 LNAEDGEVAWQTKVAGE------ALSRPVV-SDG-LVLVHTSNGMLQALNESD-GAVKWTVNLDVPSLTLRGESAPATA-  204 (394)
T ss_pred             EECCCCCCcccccCCCc------eecCCEE-ECC-EEEEECCCCEEEEEEccC-CCEeeeecCCCCcccccCCCCCEEE-
Confidence            99999998877664321      111 111 134 44444 489999999987 666553221100000 000111111 


Q ss_pred             CCCcEEEEeecCCeEEEEECCCCCceEeeccCC--C-----CeEEEEEcc--CCcEEEeeecCCCeEEEEEccCCCccce
Q psy2305         169 VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN--G-----GITHLEFSS--NGILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       169 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~-----~i~~~~~~~--~~~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                      + . .++.++.+|.+..+|..+++.+.......  +     ....+.-+|  .+..++.++ .++.+..+|..+ ++.+.
T Consensus       205 ~-~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~t-G~~~W  280 (394)
T PRK11138        205 F-G-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRS-GQIVW  280 (394)
T ss_pred             C-C-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCC-CCEEE
Confidence            2 2 56667789999999999987765542110  0     011111222  244677777 799999999987 66554


Q ss_pred             eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         240 TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      +....  .  ...+.  ..+..++.++.+|.+..+|..+++
T Consensus       281 ~~~~~--~--~~~~~--~~~~~vy~~~~~g~l~ald~~tG~  315 (394)
T PRK11138        281 KREYG--S--VNDFA--VDGGRIYLVDQNDRVYALDTRGGV  315 (394)
T ss_pred             eecCC--C--ccCcE--EECCEEEEEcCCCeEEEEECCCCc
Confidence            43311  1  11111  245667777789999999998874

>KOG2114|consensus

Probab=98.82  E-value=2.4e-06  Score=75.88  Aligned_cols=206  Identities=15%  Similarity=0.144  Sum_probs=127.9

Q ss_pred             EEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCC
Q psy2305           8 DEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYA   87 (334)
Q Consensus         8 ~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~   87 (334)
                      +|++.+..+|.|+.+|.|.+++-.-.. .              ..+.....+.|..+ |      ...+..+|++.+.|+
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~~-~--------------~~fqa~~~siv~~L-~------~~~~~~~L~sv~Ed~   87 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQL-I--------------RGFQAYEQSIVQFL-Y------ILNKQNFLFSVGEDE   87 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccccee-e--------------ehheecchhhhhHh-h------cccCceEEEEEeecC
Confidence            577888899999999998887643221 1              12222222212111 1      122335677766554


Q ss_pred             -----cEEEEeCCCC------eee---EEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCC-CCeeeeec
Q psy2305          88 -----PIHLWDSVGG------EIK---ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRP-GRECVSRN  151 (334)
Q Consensus        88 -----~i~iwd~~~~------~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~-~~~~~~~~  151 (334)
                           .+++|+++.-      +++   +.+. +.....+.++.+++.+.+-+.+|+|. +|.|..+.-+-. .+-.+.. 
T Consensus        88 ~~np~llkiw~lek~~~n~sP~c~~~~ri~~-~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~-  165 (933)
T KOG2114|consen   88 QGNPVLLKIWDLEKVDKNNSPQCLYEHRIFT-IKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD-  165 (933)
T ss_pred             CCCceEEEEecccccCCCCCcceeeeeeeec-cCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee-
Confidence                 4899998632      233   2222 11112234889999999999999997 999998853210 1111110 


Q ss_pred             ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc-eEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         152 LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP-LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                       .....+.+|+++++..++. .++....-..|.+|.+....+ ...+..|..++.|-.+++....+++++  +..+.+|+
T Consensus       166 -~~~~~~~pITgL~~~~d~~-s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~  241 (933)
T KOG2114|consen  166 -YSHRGKEPITGLALRSDGK-SVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYD  241 (933)
T ss_pred             -eeccCCCCceeeEEecCCc-eeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEEc
Confidence             2234467999999999998 423333456799999874332 455777888999999987665566665  67899999


Q ss_pred             ccCCCccceeec
Q psy2305         231 LRNPGCILHTFP  242 (334)
Q Consensus       231 ~~~~~~~~~~~~  242 (334)
                      ... ..+...+.
T Consensus       242 sd~-~~~cfaf~  252 (933)
T KOG2114|consen  242 SDG-RGPCFAFE  252 (933)
T ss_pred             CCC-cceeeeec
Confidence            886 44444554

>KOG1008|consensus

Probab=98.81  E-value=5.5e-09  Score=89.08  Aligned_cols=200  Identities=13%  Similarity=0.144  Sum_probs=131.9

Q ss_pred             ceeEEEEcCCC--cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           3 IEEDVDEAPDG--TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         3 ~V~~~~~sp~~--~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      .+.|++++-+.  ..+++|..+|.|-+-.+......             ...+...+....++++|++.      |.++|
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------------s~E~tp~~ar~Ct~lAwneL------Dtn~L  118 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------------SAEVTPGYARPCTSLAWNEL------DTNHL  118 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccc-------------cceecccccccccccccccc------cHHHH
Confidence            36677776643  47888999999999887654321             02344456677888888653      66777


Q ss_pred             EEee----CCCcEEEEeCCCCe--e--eEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeec
Q psy2305          81 LCSS----MYAPIHLWDSVGGE--I--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        81 ~~~~----~d~~i~iwd~~~~~--~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~  151 (334)
                      |+|-    .|..+.|||+.++-  .  ...+.. ...   ....+++|..+.+++.+|. ...++++|++.  ....   
T Consensus       119 Aagldkhrnds~~~Iwdi~s~ltvPke~~~fs~-~~l---~gqns~cwlrd~klvlaGm~sr~~~ifdlRq--s~~~---  189 (783)
T KOG1008|consen  119 AAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS-STL---DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ--SLDS---  189 (783)
T ss_pred             HhhhhhhcccCCccceecccccCCCcccccccc-ccc---cCccccccccCcchhhcccccchhhhhhhhh--hhhh---
Confidence            7763    45689999998762  1  122222 011   1566899998888888887 78999999984  1111   


Q ss_pred             ccccccccceEEEEEcC-CCCcEEEEeecCCeEEEEE-CCC-CCceEeeccCC----CCeEEEEEccCCc-EEEeeecCC
Q psy2305         152 LKPWFRKNIVSAIAINP-VHPDICALGTYSKIIGLFS-DSD-GRPLFFLKGHN----GGITHLEFSSNGI-LLFSGARKD  223 (334)
Q Consensus       152 ~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d-~~~-~~~~~~~~~~~----~~i~~~~~~~~~~-~l~~~~~~d  223 (334)
                       ...-.+..+..+...| .+. ++++-. ||.|.+|| .++ .+++..+....    ..+..++|.|... .+++..|..
T Consensus       190 -~~svnTk~vqG~tVdp~~~n-Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS  266 (783)
T KOG1008|consen  190 -VSSVNTKYVQGITVDPFSPN-YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS  266 (783)
T ss_pred             -hhhhhhhhcccceecCCCCC-ceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc
Confidence             1222344567788888 444 777554 99999999 333 23333332222    2488999999543 566777678


Q ss_pred             CeEEEEEccC
Q psy2305         224 CEIICWDLRN  233 (334)
Q Consensus       224 ~~i~iwd~~~  233 (334)
                      ++|+++|+..
T Consensus       267 ~tIrlydi~~  276 (783)
T KOG1008|consen  267 ITIRLYDICV  276 (783)
T ss_pred             ceEEEecccc
Confidence            9999999974

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.74  E-value=1.6e-05  Score=63.48  Aligned_cols=177  Identities=12%  Similarity=0.121  Sum_probs=106.8

Q ss_pred             CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEE
Q psy2305          86 YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAI  164 (334)
Q Consensus        86 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~  164 (334)
                      +|.|..||..+|+.+..........   ..... ..+++..+++++ ++.+..||..+ ++......  ........  .
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~---~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~--~~~~~~~~--~   72 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIG---GPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFD--LPGPISGA--P   72 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCS---SEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEE--CSSCGGSG--E
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCC---Cccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEee--ccccccce--e
Confidence            6889999999999988875422111   22222 233455666664 99999999987 66655422  11111111  1


Q ss_pred             EEcCCCCcEEEEeecCCeEEEEECCCCCceEee-ccCC---CCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         165 AINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-KGHN---GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       165 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~---~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                       ...++  .+++++.++.++.+|.++++.+... ....   ...........+..++++. .++.|..+|+++ ++.+..
T Consensus        73 -~~~~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~d~~t-G~~~w~  147 (238)
T PF13360_consen   73 -VVDGG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-SSGKLVALDPKT-GKLLWK  147 (238)
T ss_dssp             -EEETT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-TCSEEEEEETTT-TEEEEE
T ss_pred             -eeccc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe-ccCcEEEEecCC-CcEEEE
Confidence             22233  5666778889999999999988874 3221   1122333333477888888 799999999998 777666


Q ss_pred             ecccccCC--c-------eEEEEecCCCceEEeeecCCc-EEEEeCCCC
Q psy2305         241 FPRQVSTN--Q-------RVYFDLTSCSNYLLSGNTNGD-LSIWNVNTS  279 (334)
Q Consensus       241 ~~~~~~~~--~-------~~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~  279 (334)
                      ........  .       ...+.+. ++ .++.++.++. +.+ |+.++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg  193 (238)
T PF13360_consen  148 YPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATG  193 (238)
T ss_dssp             EESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTT
T ss_pred             eecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCC
Confidence            65432111  1       1223222 44 6666666775 555 99998

...

>KOG2066|consensus

Probab=98.72  E-value=1.2e-06  Score=77.08  Aligned_cols=146  Identities=10%  Similarity=0.014  Sum_probs=107.9

Q ss_pred             ceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC
Q psy2305         114 HAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR  192 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  192 (334)
                      .+.+++++  +++|+-|. +|.|++++..  +.. .    ....|...      ..+|. ++++|+.||+|.|..+-+.+
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~--~~~-~----~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~  104 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQ--GNP-K----TNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDD  104 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecC--Ccc-c----cccccccc------ccCCc-eEEEecCCCcEEEeeccCCc
Confidence            45566665  56888887 9999999987  443 2    23444333      67788 99999999999999998887


Q ss_pred             ceEeeccCCCCeEEEEEccC-----CcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeec
Q psy2305         193 PLFFLKGHNGGITHLEFSSN-----GILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT  267 (334)
Q Consensus       193 ~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  267 (334)
                      ...++. ...++.+++++|+     .+.+++|+ ..| +.++.-+-.+.. .....+...+.+.++.|.  |+++|-++.
T Consensus       105 ~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG-~ag-lvL~er~wlgnk-~~v~l~~~eG~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  105 EITQYD-FKRPIKSIALHPDFSRQQSKQFVSGG-MAG-LVLSERNWLGNK-DSVVLSEGEGPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             cceeEe-cCCcceeEEeccchhhhhhhheeecC-cce-EEEehhhhhcCc-cceeeecCccceEEEEec--CcEEEEecC
Confidence            777665 4568999999998     46788888 677 777765532222 222344457788888885  789999987


Q ss_pred             CCcEEEEeCCCCCCC
Q psy2305         268 NGDLSIWNVNTSNLP  282 (334)
Q Consensus       268 dg~i~iwd~~~~~~~  282 (334)
                      +| |++||+..++..
T Consensus       179 ~G-v~vyd~~~~~~l  192 (846)
T KOG2066|consen  179 DG-VKVYDTPTRQRL  192 (846)
T ss_pred             CC-cEEEecccccee
Confidence            77 999999987543

>KOG3617|consensus

Probab=98.71  E-value=2.3e-06  Score=76.02  Aligned_cols=277  Identities=12%  Similarity=0.036  Sum_probs=150.9

Q ss_pred             EEEcCCCcEEEEee----CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           7 VDEAPDGTCLLTNS----NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         7 ~~~sp~~~~l~~~~----~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      ..|+|...++|+++    ..|.|.||- ++++...              -..  ..-.+.+++|       +|..-.|+.
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr--------------~Vt--~P~hatSLCW-------Hpe~~vLa~   76 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR--------------DVT--YPVHATSLCW-------HPEEFVLAQ   76 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc--------------ccc--cceehhhhcc-------ChHHHHHhh
Confidence            46899999999886    458888884 4444321              010  1122455677       556777888


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecc---------
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNL---------  152 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~---------  152 (334)
                      |-.-|.+.+|...+.+.-.....|..     ++..+.||++|..|+++. -|.+.+|.....++. ...++         
T Consensus        77 gwe~g~~~v~~~~~~e~htv~~th~a-----~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~-q~~~~~~hel~~~l  150 (1416)
T KOG3617|consen   77 GWEMGVSDVQKTNTTETHTVVETHPA-----PIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI-QTSNIMQHELNDQL  150 (1416)
T ss_pred             ccccceeEEEecCCceeeeeccCCCC-----CceeEEecCCCCeEEEcCCCceeEEEEeeecccc-ccchhhhhHhhcee
Confidence            88889999999776555444444333     899999999999999998 799999987742211 10000         


Q ss_pred             --------------------cccccccceE------------EE--EEcCCCCcEEEEeecCCeEEEEECCCCCceEeec
Q psy2305         153 --------------------KPWFRKNIVS------------AI--AINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK  198 (334)
Q Consensus       153 --------------------~~~~~~~~v~------------~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  198 (334)
                                          ...+....+-            ++  .-.|+|. .++.++.+|+|+..|- .++.....+
T Consensus       151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~-~F~~~~~~GtVyyvdq-~g~~~~V~k  228 (1416)
T KOG3617|consen  151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGT-EFLFAGKSGTVYYVDQ-NGRQRTVHK  228 (1416)
T ss_pred             eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCc-EEEEEcCCceEEEEcC-CCcEEEEEE
Confidence                                0000000000            00  0135566 7777888888888883 454444332


Q ss_pred             cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc---------------------------cce-e-ecccccCCc
Q psy2305         199 GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC---------------------------ILH-T-FPRQVSTNQ  249 (334)
Q Consensus       199 ~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~---------------------------~~~-~-~~~~~~~~~  249 (334)
                      ..+.  ..+-|.+-...+.... .+-++.++-....+.                           .+. . --+...+..
T Consensus       229 ~dS~--vQmLf~~~~eai~~i~-e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~  305 (1416)
T KOG3617|consen  229 LDSE--VQMLFMGYCEAISIII-EFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEG  305 (1416)
T ss_pred             ccch--HHHHHhcccceEEEEe-eeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCc
Confidence            2111  1122222222222222 222222221111000                           000 0 001123456


Q ss_pred             eEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeee
Q psy2305         250 RVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCS  326 (334)
Q Consensus       250 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~  326 (334)
                      +.+++++..+..|..|...|.+.+|--........|. ...|. +.......+.|+.+.|  .|-.    ..++.-+
T Consensus       306 ~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~-~d~w~-l~~~~e~~g~I~~i~W--g~~k----~~~avn~  374 (1416)
T KOG3617|consen  306 ILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPT-IDVWT-LNGKRESLGKISLIRW--GPIK----STAAVNT  374 (1416)
T ss_pred             eEEEEEeccceEEEecccCCcEEEeeecCccccCCCC-cceEE-ecCchhhccceEEEEe--cccc----chhhhhh
Confidence            7889999999999999999999999544332222221 11111 1122223467899999  8866    5544433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.70  E-value=6.2e-05  Score=59.45  Aligned_cols=203  Identities=11%  Similarity=0.089  Sum_probs=109.3

Q ss_pred             CceeEEEEcCCCc-EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGT-CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +-+..++|+|+.. ++++....+.|..++.+ ++...              .+.....+..-++++       ..++.++
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr--------------~i~l~g~~D~EgI~y-------~g~~~~v   79 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLR--------------RIPLDGFGDYEGITY-------LGNGRYV   79 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE--------------EEE-SS-SSEEEEEE--------STTEEE
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEE--------------EEeCCCCCCceeEEE-------ECCCEEE
Confidence            3488999999755 56666778888888875 45442              222221233444444       5577777


Q ss_pred             EEeeCCCcEEEEeCCCCe------eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCC--CCCeeeee-
Q psy2305          81 LCSSMYAPIHLWDSVGGE------IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDR--PGRECVSR-  150 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~--~~~~~~~~-  150 (334)
                      ++.-+++.+.++++....      ....+...........+-.++|.|.++.|+.+. ..-..+|.++.  ....+... 
T Consensus        80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred             EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence            776678889888873321      112222111111112688999999988887775 55566666653  11111110 


Q ss_pred             ccc---ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC---------CCeEEEEEccCCcEEEe
Q psy2305         151 NLK---PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN---------GGITHLEFSSNGILLFS  218 (334)
Q Consensus       151 ~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~  218 (334)
                      ...   .......+.+++++|...++++....+..|..+| .+|+.+..+.-..         ...-.|+|.++|++. .
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-I  237 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-I  237 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-E
T ss_pred             ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-E
Confidence            000   1123456789999999776888888899999999 6787766553221         246789999999644 4


Q ss_pred             eecCCCeEEEE
Q psy2305         219 GARKDCEIICW  229 (334)
Q Consensus       219 ~~~~d~~i~iw  229 (334)
                      .+ +-+..+++
T Consensus       238 vs-EpNlfy~f  247 (248)
T PF06977_consen  238 VS-EPNLFYRF  247 (248)
T ss_dssp             EE-TTTEEEEE
T ss_pred             Ec-CCceEEEe
Confidence            55 55555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1275|consensus

Probab=98.70  E-value=9.4e-07  Score=78.80  Aligned_cols=183  Identities=17%  Similarity=0.200  Sum_probs=128.0

Q ss_pred             CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEE
Q psy2305          12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHL   91 (334)
Q Consensus        12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~i   91 (334)
                      ++..++.|+....+..+|+.+.+..              ..... ....|.=++.         +++++.+|...|+|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~--------------r~~~v-~a~~v~imR~---------Nnr~lf~G~t~G~V~L  201 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKET--------------RTTNV-SASGVTIMRY---------NNRNLFCGDTRGTVFL  201 (1118)
T ss_pred             CCcceeecchhhheeeeecccceee--------------eeeec-cCCceEEEEe---------cCcEEEeecccceEEe
Confidence            3445667776667777888877654              12222 2223555555         7899999999999999


Q ss_pred             EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee----------CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----------LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      -|..+.+.+.++..|..     .+..  |.-.|+.|++++          |.-|++||++. -+.+..    ..-+.+ .
T Consensus       202 rD~~s~~~iht~~aHs~-----siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~P----I~~~~~-P  268 (1118)
T KOG1275|consen  202 RDPNSFETIHTFDAHSG-----SISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSP----IQFPYG-P  268 (1118)
T ss_pred             ecCCcCceeeeeecccc-----ceee--eeccCCeEEEeecccccccccccchhhhhhhhh-hhccCC----cccccC-c
Confidence            99999999999998664     4444  555677888542          33589999996 333332    122222 2


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEEC---CCC-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSD---SDG-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~---~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      .-+.|+|.-...+++++..|...+-|.   .+. ..+..+......+..+.++++|..++.+. .+|.|.+|.-+
T Consensus       269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd-~~g~v~~wa~~  342 (1118)
T KOG1275|consen  269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD-HEGHVNLWADR  342 (1118)
T ss_pred             hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec-ccCcEeeecCC
Confidence            456788887668889999999999994   333 12233333445599999999999999999 89999999844

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.70  E-value=2e-06  Score=73.43  Aligned_cols=114  Identities=19%  Similarity=0.237  Sum_probs=81.8

Q ss_pred             ceeEEEEcCC-CCEEEEe----e-CCc----EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeE
Q psy2305         114 HAYSLAFSLD-GNKIYAG----F-LSE----VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKII  183 (334)
Q Consensus       114 ~v~~~~~~~~-~~~l~~~----~-d~~----i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  183 (334)
                      ...++.|+.. ...+.+.    + +|.    -.+|++.. . .++............+.+++++|+.. .++.|+.||.|
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r-~-klqrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSi  283 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSR-N-KLQRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSI  283 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeec-C-ceeEEEEEEEecCCcceEEecCcccc-eEEEEecCCeE
Confidence            3467778763 3344432    2 443    44677764 2 23332223446678899999999999 99999999999


Q ss_pred             EEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         184 GLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       184 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      .+||...+.  ..+....-..+.++|+|+|..+++|+ ..|.+.+||+.-
T Consensus       284 iLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s-~qGelQ~FD~AL  330 (545)
T PF11768_consen  284 ILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGS-EQGELQCFDMAL  330 (545)
T ss_pred             EEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEc-CCceEEEEEeec
Confidence            999986552  22333445678899999999999999 899999999975

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.68  E-value=2.5e-05  Score=66.10  Aligned_cols=245  Identities=13%  Similarity=0.116  Sum_probs=123.0

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEE-E--------eccccee
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYV-W--------YPKTSSI   73 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~--------~~~~~~~   73 (334)
                      .+....|||+|+.+|... ++.|.+++..++...+ +...             +.....+++. |        ....+-|
T Consensus        44 ~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~-lT~d-------------g~~~i~nG~~dwvyeEEv~~~~~~~~W  108 (353)
T PF00930_consen   44 KLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ-LTTD-------------GEPGIYNGVPDWVYEEEVFDRRSAVWW  108 (353)
T ss_dssp             TBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE-SES---------------TTTEEESB--HHHHHHTSSSSBSEEE
T ss_pred             ccccceeecCCCeeEEEe-cCceEEEECCCCCeEE-eccc-------------cceeEEcCccceeccccccccccceEE
Confidence            467789999999998875 5789999988774431 1110             0000011110 0        0123445


Q ss_pred             cCCCcEEEEeeCC-C-----------------------------------cEEEEeCCCCeeeEEEcCccccccccceeE
Q psy2305          74 DGFTSYFLCSSMY-A-----------------------------------PIHLWDSVGGEIKATYRPYNQVDEVTHAYS  117 (334)
Q Consensus        74 s~~~~~l~~~~~d-~-----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  117 (334)
                      |||+++|+....| .                                   .+.|+|+.+++....-...........+..
T Consensus       109 Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~  188 (353)
T PF00930_consen  109 SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTR  188 (353)
T ss_dssp             -TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEE
T ss_pred             CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCccc
Confidence            7888888765432 1                                   233445555443211100000111126789


Q ss_pred             EEEcCCCCEEEEe--e-C---CcEEEEEcCCCCCeeeeecccccccccceEEEEEc-CCCCcEEEEeecCCe--EEEEEC
Q psy2305         118 LAFSLDGNKIYAG--F-L---SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN-PVHPDICALGTYSKI--IGLFSD  188 (334)
Q Consensus       118 ~~~~~~~~~l~~~--~-d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~--i~i~d~  188 (334)
                      +.|.++++.|+..  + +   ..+.++|..+......... ...+--.......+. +++..++.....+|.  |.+++.
T Consensus       189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~  267 (353)
T PF00930_consen  189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE-TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL  267 (353)
T ss_dssp             EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE-ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred             ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe-cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence            9999999844432  2 2   2455667765222222100 111111222355554 777746666667775  555565


Q ss_pred             CCCCceEeeccCCCCeEE-EEEccCCcEEEeeecCC--CeEEEEEccCC-CccceeecccccCCceEEEEecCCCceEEe
Q psy2305         189 SDGRPLFFLKGHNGGITH-LEFSSNGILLFSGARKD--CEIICWDLRNP-GCILHTFPRQVSTNQRVYFDLTSCSNYLLS  264 (334)
Q Consensus       189 ~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~~d--~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  264 (334)
                      ..+. ...+....-.|.. +.++++++.|+..+..+  ..-.+|.+... +.....+.......  ..+.|||++++++.
T Consensus       268 ~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~--~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  268 DGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH--YSASFSPDGKYYVD  344 (353)
T ss_dssp             TSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT--EEEEE-TTSSEEEE
T ss_pred             cccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc--eEEEECCCCCEEEE
Confidence            4444 4566655666754 77888877665444132  23444544433 34455555432222  56889999999875


Q ss_pred             ee
Q psy2305         265 GN  266 (334)
Q Consensus       265 ~~  266 (334)
                      ..
T Consensus       345 ~~  346 (353)
T PF00930_consen  345 TY  346 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.67  E-value=3.6e-06  Score=72.09  Aligned_cols=183  Identities=18%  Similarity=0.075  Sum_probs=109.6

Q ss_pred             ceeEEEEcCCCcEEEEee---CC-CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc
Q psy2305           3 IEEDVDEAPDGTCLLTNS---ND-NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~---~d-~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      .+..-+|+|+++.++..+   .. ..+.++++++++..              ..+.  ..+.-       ...+|+|||+
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~--------------~i~~--~~g~~-------~~P~fspDG~  250 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP--------------VILN--FNGNN-------GAPAFSPDGS  250 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc--------------eeec--cCCcc-------CCccCCCCCC
Confidence            355667899988765543   22 46888999888754              1111  11111       2245688999


Q ss_pred             EEEEe-eCCCc--EEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeeccc
Q psy2305          79 YFLCS-SMYAP--IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        79 ~l~~~-~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      .|+.+ .+||.  |.+.|+..+...+ +.....     .-..-.|+|||+.++..+  .|.-.||-++..+.....    
T Consensus       251 ~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~g-----i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r----  320 (425)
T COG0823         251 KLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFG-----INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR----  320 (425)
T ss_pred             EEEEEECCCCCccEEEEcCCCCccee-cccCCc-----cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE----
Confidence            87765 45664  5666887666433 332221     223668999999999654  465555554443544432    


Q ss_pred             ccccccceEEEEEcCCCCcEEEEeec-CCe--EEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeee
Q psy2305         154 PWFRKNIVSAIAINPVHPDICALGTY-SKI--IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  220 (334)
                      +......-..-.|+|+|+ +++..+. +|.  |.+.|+.++...+.+. +........|.|+|+.++..+
T Consensus       321 iT~~~~~~~~p~~SpdG~-~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         321 LTFSGGGNSNPVWSPDGD-KIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             eeccCCCCcCccCCCCCC-EEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence            222222222778999999 7766554 344  7777776665555554 334445677889998887766

>KOG1645|consensus

Probab=98.63  E-value=4.2e-06  Score=68.00  Aligned_cols=236  Identities=17%  Similarity=0.192  Sum_probs=131.7

Q ss_pred             eceeEEEEEEecccceecCCCc-EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCE-EEEee-CC
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTS-YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK-IYAGF-LS  133 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-d~  133 (334)
                      ++..|.+++|       ||..+ ++..++.+..|+|.|+++......+..+.      .+++++|.-|... +++|. .|
T Consensus       192 ~g~~Irdlaf-------Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~------~~wSC~wDlde~h~IYaGl~nG  258 (463)
T KOG1645|consen  192 EGSFIRDLAF-------SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN------QIWSCCWDLDERHVIYAGLQNG  258 (463)
T ss_pred             cchhhhhhcc-------CccccceeeeeccCceEEEEecccceeeeheeccC------CceeeeeccCCcceeEEeccCc
Confidence            4455655555       66666 78889999999999999998888887654      8999999988754 55665 89


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEcC------CCCcEEEEeecCCeEEEEECCC--C--CceEeeccCCCC
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINP------VHPDICALGTYSKIIGLFSDSD--G--RPLFFLKGHNGG  203 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~l~~~~~dg~i~i~d~~~--~--~~~~~~~~~~~~  203 (334)
                      .|.+||++.+.......  .-.....+|..++.-+      .|. +++....  .+..|++.-  +  -++..+. ..+.
T Consensus       259 ~VlvyD~R~~~~~~~e~--~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele-~pG~  332 (463)
T KOG1645|consen  259 MVLVYDMRQPEGPLMEL--VANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELE-PPGI  332 (463)
T ss_pred             eEEEEEccCCCchHhhh--hhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccC-CCcc
Confidence            99999999755444321  0112234454444332      233 3433322  244555421  1  2222222 3556


Q ss_pred             eEEEEEccCCcEEEeeecCCCe------EEE-EEccCCCccceeecccccCCc------eEEEEecCCCceEE-eeecCC
Q psy2305         204 ITHLEFSSNGILLFSGARKDCE------IIC-WDLRNPGCILHTFPRQVSTNQ------RVYFDLTSCSNYLL-SGNTNG  269 (334)
Q Consensus       204 i~~~~~~~~~~~l~~~~~~d~~------i~i-wd~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~l~-~~~~dg  269 (334)
                      ..++++.+-.+.++...|.+..      +-. -|.+. +.++..-.....+..      -..+.-.++.++++ +++..+
T Consensus       333 cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~d-G~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn  411 (463)
T KOG1645|consen  333 CISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRD-GFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN  411 (463)
T ss_pred             eeeeeecCccceEEEEecCCCCCccceeeeeeecccc-CceeeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence            6677777755555554433211      111 11111 222211111000000      00111135556655 445567


Q ss_pred             cEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecce
Q psy2305         270 DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQI  329 (334)
Q Consensus       270 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~  329 (334)
                      .+.+||..+.            +.++.+.- ..+|.+++.+....+    .+|++-.+|.
T Consensus       412 ~lil~D~~s~------------evvQ~l~~-~epv~Dicp~~~n~~----syLa~LTd~~  454 (463)
T KOG1645|consen  412 ELILQDPHSF------------EVVQTLAL-SEPVLDICPNDTNGS----SYLALLTDDR  454 (463)
T ss_pred             eeEEeccchh------------heeeeccc-CcceeecceeecCCc----chhhheecce
Confidence            8999999997            56666654 367888887433334    6777766654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.62  E-value=1.1e-05  Score=73.37  Aligned_cols=138  Identities=15%  Similarity=0.179  Sum_probs=98.9

Q ss_pred             CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC-------CEEEEe-eCCcEEEEEcCCCCCeeeeecccccc
Q psy2305          85 MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG-------NKIYAG-FLSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        85 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      ....|+-.|++.|+.+.....+...    +|.  .+.|+.       ...+.| +++.+..||.+..+..+.........
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~----~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~  575 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDI----PVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS  575 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCc----cee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence            4567889999999999998875531    233  444432       233445 58999999999755333221112234


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      .....+|++-+.+|  +||+|+.+|.|++||--..+....+.+-..+|.+|..+.||++|++.+  +..+.+++..
T Consensus       576 ~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~  647 (794)
T PF08553_consen  576 SKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL  647 (794)
T ss_pred             cCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence            45678899988888  699999999999999433333444567788999999999999998876  7888888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.62  E-value=1.2e-07  Score=51.78  Aligned_cols=34  Identities=18%  Similarity=0.159  Sum_probs=32.5

Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEE
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS  187 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  187 (334)
                      .+.+|...|.+++|+|++. +|++++.|+.|++||
T Consensus         6 ~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            5789999999999999999 999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1008|consensus

Probab=98.61  E-value=1.7e-08  Score=86.22  Aligned_cols=194  Identities=15%  Similarity=0.121  Sum_probs=124.5

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCeee-EEE-cCccccccccceeEEEEcC-CCCEEEEee-----CCcEEEEEcCCCCCee
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGEIK-ATY-RPYNQVDEVTHAYSLAFSL-DGNKIYAGF-----LSEVKIFSTDRPGREC  147 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-----d~~i~i~d~~~~~~~~  147 (334)
                      +..++++|..+|.|.+-.+....-. ..+ ..+..     .+++++|++ |.+.||+|-     |..+.|||+.+.-...
T Consensus        69 d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar-----~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP  143 (783)
T KOG1008|consen   69 DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYAR-----PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP  143 (783)
T ss_pred             chhhhhhccccCceEEeecCCcccccceecccccc-----cccccccccccHHHHHhhhhhhcccCCccceecccccCCC
Confidence            4457888999999998876543322 222 22222     789999998 456788773     5789999998631111


Q ss_pred             eeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc-eEeeccCCCCeEEEEEcc-CCcEEEeeecCCCe
Q psy2305         148 VSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP-LFFLKGHNGGITHLEFSS-NGILLFSGARKDCE  225 (334)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~  225 (334)
                      ...+....+......+++|..+.+ ++.+|...+.+.++|++.... ...+  ....+..+...| .+.++++..  |+.
T Consensus       144 ke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~--dg~  218 (783)
T KOG1008|consen  144 KESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS--DGD  218 (783)
T ss_pred             ccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc--cCc
Confidence            111111112445566889998888 888999999999999984322 2222  223456677888 677887665  999


Q ss_pred             EEEEE-ccCCCccceeeccccc--CCceEEEEecCCCc-eEEeee-cCCcEEEEeCCCC
Q psy2305         226 IICWD-LRNPGCILHTFPRQVS--TNQRVYFDLTSCSN-YLLSGN-TNGDLSIWNVNTS  279 (334)
Q Consensus       226 i~iwd-~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~  279 (334)
                      |.+|| .+....++..+.....  ......++|.|... .+++.. ..++|+++++..-
T Consensus       219 iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v  277 (783)
T KOG1008|consen  219 IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV  277 (783)
T ss_pred             eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence            99999 5554455544443211  23478899999643 344443 4578999987653

>KOG3621|consensus

Probab=98.60  E-value=1.5e-05  Score=69.50  Aligned_cols=207  Identities=11%  Similarity=0.035  Sum_probs=116.7

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeee-eceeEEEEEEecccceecCCCcEEEE
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK-EGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      |.--+++..+++++.|+.-|.|++|+-..++..               .+... ..+.+..       ..++++..++|.
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~---------------~~~~~~~~~~~~~-------~~vs~~e~lvAa   93 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR---------------KLKNEGATGITCV-------RSVSSVEYLVAA   93 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhh---------------cccccCccceEEE-------EEecchhHhhhh
Confidence            344566778899999999999999999888754               11111 1122222       334778888999


Q ss_pred             eeCCCcEEEEeCCCCeee-EEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          83 SSMYAPIHLWDSVGGEIK-ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      |+..|.|.++-+..+... ..+-.+.+..+...|++++|++++..+++|. .|.|..-.++.. .........+......
T Consensus        94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~~~~q~il~~ds~  172 (726)
T KOG3621|consen   94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFLSKSQEILSEDSE  172 (726)
T ss_pred             hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhccccceeeccCcc
Confidence            999999999987653321 1111122222344899999999999999997 799998887751 1110000022233455


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc--eEeeccCCCCeEEEEEccC----CcEEEeeecCCCeEEEEEccCC
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSN----GILLFSGARKDCEIICWDLRNP  234 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~----~~~l~~~~~~d~~i~iwd~~~~  234 (334)
                      |--+.+...   +|++++.- ...+++++.+..  +..-....-.-...+|-|.    .+-.+.++  -.-.|+|..+-.
T Consensus       173 IVQlD~~q~---~LLVStl~-r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca--RPG~RlWead~~  246 (726)
T KOG3621|consen  173 IVQLDYLQS---YLLVSTLT-RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA--RPGLRLWEADFA  246 (726)
T ss_pred             eEEeecccc---eehHhhhh-hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe--cCCCceEEeecc
Confidence            666665433   34433322 234455543321  1111111111234556553    33344444  234677877654


Q ss_pred             Cccce
Q psy2305         235 GCILH  239 (334)
Q Consensus       235 ~~~~~  239 (334)
                      |..+.
T Consensus       247 G~V~~  251 (726)
T KOG3621|consen  247 GEVIK  251 (726)
T ss_pred             eeEEE
Confidence            54433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.58  E-value=6.2e-06  Score=70.92  Aligned_cols=141  Identities=13%  Similarity=0.043  Sum_probs=84.7

Q ss_pred             ceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc
Q psy2305         114 HAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP  193 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  193 (334)
                      .+..+.++|+|++++++++|...+|.... .+.         ...+.-..++|.+.+  .+|+-..+++|.++.--+.+.
T Consensus        34 ~p~~ls~npngr~v~V~g~geY~iyt~~~-~r~---------k~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVCGDGEYEIYTALA-WRN---------KAFGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV  101 (443)
T ss_dssp             --SEEEE-TTSSEEEEEETTEEEEEETTT-TEE---------EEEEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T
T ss_pred             CCeeEEECCCCCEEEEEcCCEEEEEEccC-Ccc---------cccCceeEEEEecCc--cEEEEECCCeEEEEEcCcccc
Confidence            56899999999999998899999998442 111         113445678899955  566676788999974333333


Q ss_pred             eEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEE
Q psy2305         194 LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSI  273 (334)
Q Consensus       194 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i  273 (334)
                      ...++. ...+..+-.   |..|...+  ++.|.+||..+ ++.+.++...    .+..+.|+++|.+++..+.+ .+.|
T Consensus       102 ~k~i~~-~~~~~~If~---G~LL~~~~--~~~i~~yDw~~-~~~i~~i~v~----~vk~V~Ws~~g~~val~t~~-~i~i  169 (443)
T PF04053_consen  102 VKSIKL-PFSVEKIFG---GNLLGVKS--SDFICFYDWET-GKLIRRIDVS----AVKYVIWSDDGELVALVTKD-SIYI  169 (443)
T ss_dssp             T------SS-EEEEE----SSSEEEEE--TTEEEEE-TTT---EEEEESS-----E-EEEEE-TTSSEEEEE-S--SEEE
T ss_pred             ceEEcC-CcccceEEc---CcEEEEEC--CCCEEEEEhhH-cceeeEEecC----CCcEEEEECCCCEEEEEeCC-eEEE
Confidence            334432 223444433   88888777  55899999998 7777777632    36778999999999998765 5788


Q ss_pred             EeCCC
Q psy2305         274 WNVNT  278 (334)
Q Consensus       274 wd~~~  278 (334)
                      ++...
T Consensus       170 l~~~~  174 (443)
T PF04053_consen  170 LKYNL  174 (443)
T ss_dssp             EEE-H
T ss_pred             EEecc
Confidence            76554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=0.00012  Score=62.58  Aligned_cols=197  Identities=15%  Similarity=0.129  Sum_probs=132.7

Q ss_pred             eEEEEcCCCcEEEE-eeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           5 EDVDEAPDGTCLLT-NSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         5 ~~~~~sp~~~~l~~-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      ..++.++.+..++. ...++.|.+.|..+.....              ..      .+-   ..|..++++++++.+.++
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~--------------~~------~vG---~~P~~~~~~~~~~~vYV~  133 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG--------------SI------PVG---LGPVGLAVDPDGKYVYVA  133 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceee--------------Ee------eec---cCCceEEECCCCCEEEEE
Confidence            46778888875544 4456889999976665541              11      111   156677889999877766


Q ss_pred             eC---CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeee-eeccccccc
Q psy2305          84 SM---YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECV-SRNLKPWFR  157 (334)
Q Consensus        84 ~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~-~~~~~~~~~  157 (334)
                      ..   ++++.+.|..+++.......-..     + ..++++|+|+.++...  ++.+.+.|...  ..+. ........-
T Consensus       134 n~~~~~~~vsvid~~t~~~~~~~~vG~~-----P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~--~~v~~~~~~~~~~~  205 (381)
T COG3391         134 NAGNGNNTVSVIDAATNKVTATIPVGNT-----P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG--NSVVRGSVGSLVGV  205 (381)
T ss_pred             ecccCCceEEEEeCCCCeEEEEEecCCC-----c-ceEEECCCCCeEEEEecCCCeEEEEeCCC--cceecccccccccc
Confidence            54   68899999998888777543221     3 7999999999887664  89999999764  2222 100001222


Q ss_pred             ccceEEEEEcCCCCcEEEEeecC---CeEEEEECCCCCceEe-eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         158 KNIVSAIAINPVHPDICALGTYS---KIIGLFSDSDGRPLFF-LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      ......+.++|+|. .+.+....   +.+...|..++..... +.........+..+|+|+.+++.....+.+.+-|...
T Consensus       206 ~~~P~~i~v~~~g~-~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         206 GTGPAGIAVDPDGN-RVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             CCCCceEEECCCCC-EEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence            33446789999999 55444333   5899999988776654 2211114567899999999998863458889988876

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=0.0004  Score=59.42  Aligned_cols=197  Identities=12%  Similarity=0.153  Sum_probs=130.4

Q ss_pred             EecccceecCCCcEE-EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee----CCcEEEEEc
Q psy2305          66 WYPKTSSIDGFTSYF-LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----LSEVKIFST  140 (334)
Q Consensus        66 ~~~~~~~~s~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~i~d~  140 (334)
                      +.|..+++++.+..+ +....++.|.+.|..+.+.......-.      ....++++|+++.+..+.    ++.+.+.|.
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~  147 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDA  147 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc------CCceEEECCCCCEEEEEecccCCceEEEEeC
Confidence            556677788888854 444556889999987777666554422      457999999998888653    467777777


Q ss_pred             CCCCCeeeeecccccccccceEEEEEcCCCCcEEEEe-ecCCeEEEEECCCCCceE-e----eccCCCCeEEEEEccCCc
Q psy2305         141 DRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALG-TYSKIIGLFSDSDGRPLF-F----LKGHNGGITHLEFSSNGI  214 (334)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~-~----~~~~~~~i~~~~~~~~~~  214 (334)
                      .+ ......    ...-..+ ..++++|+|. .++.. ..++.|.+.|.......+ .    .. -...-..+.++|+|.
T Consensus       148 ~t-~~~~~~----~~vG~~P-~~~a~~p~g~-~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~  219 (381)
T COG3391         148 AT-NKVTAT----IPVGNTP-TGVAVDPDGN-KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGN  219 (381)
T ss_pred             CC-CeEEEE----EecCCCc-ceEEECCCCC-eEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCC
Confidence            65 444442    1111233 8899999999 55544 478999999976654442 1    11 122345789999999


Q ss_pred             EEEeeecCC--CeEEEEEccCCCcccee-ecccccCCceEEEEecCCCceEEeeec-CCcEEEEeCCCC
Q psy2305         215 LLFSGARKD--CEIICWDLRNPGCILHT-FPRQVSTNQRVYFDLTSCSNYLLSGNT-NGDLSIWNVNTS  279 (334)
Q Consensus       215 ~l~~~~~~d--~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~  279 (334)
                      ++++....+  +.+...|... +..... .... .. ....+..+|+|+++.+... .+.+.+.|..+.
T Consensus       220 ~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~-~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         220 RVYVANDGSGSNNVLKIDTAT-GNVTATDLPVG-SG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             EEEEEeccCCCceEEEEeCCC-ceEEEeccccc-cC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            877766223  4788888876 333322 2211 11 3445678999999888744 478999988875

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.51  E-value=9.6e-06  Score=69.45  Aligned_cols=115  Identities=13%  Similarity=0.110  Sum_probs=82.1

Q ss_pred             ccceEEEEEcCCCCcEEEEee----cCCe----EEEEECCCCCce----EeeccCCCCeEEEEEccCCcEEEeeecCCCe
Q psy2305         158 KNIVSAIAINPVHPDICALGT----YSKI----IGLFSDSDGRPL----FFLKGHNGGITHLEFSSNGILLFSGARKDCE  225 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~----~dg~----i~i~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~  225 (334)
                      +....++.|+-..++.+.+..    .+|.    -.+|+...++..    .++ .....+.+.+++|+...|+.|+ .||+
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC-~DgS  282 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGC-EDGS  282 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEe-cCCe
Confidence            344567788775554565542    2332    456776544321    122 3667899999999999999999 9999


Q ss_pred             EEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         226 IICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       226 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      |.+||... +.  ..+...  ......++|+|+|.++++|+..|.+.+||+.-.
T Consensus       283 iiLyD~~~-~~--t~~~ka--~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  283 IILYDTTR-GV--TLLAKA--EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEEcCC-Ce--eeeeee--cccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            99999986 32  222222  344567899999999999999999999998765

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.49  E-value=0.00034  Score=57.07  Aligned_cols=259  Identities=11%  Similarity=0.061  Sum_probs=145.7

Q ss_pred             CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee----------CCCcEEEE
Q psy2305          23 NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS----------MYAPIHLW   92 (334)
Q Consensus        23 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~----------~d~~i~iw   92 (334)
                      +++.++|.++++..              ..+..+....          +.++|+++.+.+++          +.-.|.+|
T Consensus        17 ~rv~viD~d~~k~l--------------Gmi~~g~~~~----------~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~   72 (342)
T PF06433_consen   17 SRVYVIDADSGKLL--------------GMIDTGFLGN----------VALSPDGKTIYVAETFYSRGTRGERTDVVEIW   72 (342)
T ss_dssp             EEEEEEETTTTEEE--------------EEEEEESSEE----------EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ceEEEEECCCCcEE--------------EEeecccCCc----------eeECCCCCEEEEEEEEEeccccccceeEEEEE
Confidence            57999998888765              3333333222          33588999888753          33478999


Q ss_pred             eCCCCeeeEEEcCccc--cccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeeeeecccccccccceEEEEEc
Q psy2305          93 DSVGGEIKATYRPYNQ--VDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN  167 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (334)
                      |.++-.....+.....  .........++++.|+++++...   -.+|.+-|+.. ++....++     -.+   |.-.-
T Consensus        73 D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~-~kvv~ei~-----~PG---C~~iy  143 (342)
T PF06433_consen   73 DTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA-KKVVGEID-----TPG---CWLIY  143 (342)
T ss_dssp             ETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT-TEEEEEEE-----GTS---EEEEE
T ss_pred             ecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCC-Cceeeeec-----CCC---EEEEE
Confidence            9999887765544321  11111345678999999998764   67899999985 44433211     112   22222


Q ss_pred             CCCCcEEEEeecCCeEEEEECC-CCCceEee----ccCCCCe-EEEEEccCCcEEEeeecCCCeEEEEEccCCCc-ccee
Q psy2305         168 PVHPDICALGTYSKIIGLFSDS-DGRPLFFL----KGHNGGI-THLEFSSNGILLFSGARKDCEIICWDLRNPGC-ILHT  240 (334)
Q Consensus       168 ~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~----~~~~~~i-~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~-~~~~  240 (334)
                      |.++.-|.+-|.||.+.-..+. .|+...+.    .....++ ..-++...+..++..+ .+|.|+--|+..... ....
T Consensus       144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S-y~G~v~~~dlsg~~~~~~~~  222 (342)
T PF06433_consen  144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS-YEGNVYSADLSGDSAKFGKP  222 (342)
T ss_dssp             EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB-TTSEEEEEEETTSSEEEEEE
T ss_pred             ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEe-cCCEEEEEeccCCcccccCc
Confidence            3333257778889999999886 45554322    1112222 2334455555555567 799999999875321 1111


Q ss_pred             ecc---c-ccCCce----EEEEecCCCceEEeeec--------CC--cEEEEeCCCCCCCCCCCccccccccceeccccc
Q psy2305         241 FPR---Q-VSTNQR----VYFDLTSCSNYLLSGNT--------NG--DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD  302 (334)
Q Consensus       241 ~~~---~-~~~~~~----~~~~~s~~~~~l~~~~~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (334)
                      +..   . ....+.    --+++++..+.|++.-.        |+  .|.++|+.++            +.+..+.. ..
T Consensus       223 ~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~------------krv~Ri~l-~~  289 (342)
T PF06433_consen  223 WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH------------KRVARIPL-EH  289 (342)
T ss_dssp             EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT------------EEEEEEEE-EE
T ss_pred             ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC------------eEEEEEeC-CC
Confidence            110   0 001111    12567776555554322        22  4777788887            56666653 34


Q ss_pred             ccceeeeccCCCcccceeeEEee-ecceeeee
Q psy2305         303 CTNGVRWKHHKFERDLLVADATC-SGQITNVK  333 (334)
Q Consensus       303 ~i~~~~~~~s~~~~~~~~~l~t~-~~d~~i~~  333 (334)
                      .+.++..  +.+..   ++|.+. ..++.+.+
T Consensus       290 ~~~Si~V--sqd~~---P~L~~~~~~~~~l~v  316 (342)
T PF06433_consen  290 PIDSIAV--SQDDK---PLLYALSAGDGTLDV  316 (342)
T ss_dssp             EESEEEE--ESSSS----EEEEEETTTTEEEE
T ss_pred             ccceEEE--ccCCC---cEEEEEcCCCCeEEE
Confidence            6789999  87762   566554 45676654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.49  E-value=0.00011  Score=61.53  Aligned_cols=181  Identities=14%  Similarity=0.083  Sum_probs=111.6

Q ss_pred             cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC----CCEEEEee---C--------CcEEEEEcCCC-C--Ceeee
Q psy2305          88 PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD----GNKIYAGF---L--------SEVKIFSTDRP-G--RECVS  149 (334)
Q Consensus        88 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~---d--------~~i~i~d~~~~-~--~~~~~  149 (334)
                      .|++.|..+.+.+..+..... .....+..+.+..+    ..++++|.   .        |.|.++++... .  ..+..
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            578888888777666554322 11113334445543    45676542   1        78999999862 1  12221


Q ss_pred             ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC-ceEeec-cCCCCeEEEEEccCCcEEEeeecCCCeEE
Q psy2305         150 RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR-PLFFLK-GHNGGITHLEFSSNGILLFSGARKDCEII  227 (334)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~  227 (334)
                      .  .....+++|++++-- ++  .|+.+ .++.|.+|++...+ ....-. .....+.++...  +.++++|. ....+.
T Consensus        82 i--~~~~~~g~V~ai~~~-~~--~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD-~~~sv~  152 (321)
T PF03178_consen   82 I--HSTEVKGPVTAICSF-NG--RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGD-AMKSVS  152 (321)
T ss_dssp             E--EEEEESS-EEEEEEE-TT--EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEE-SSSSEE
T ss_pred             E--EEEeecCcceEhhhh-CC--EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEE-cccCEE
Confidence            1  234557889998876 33  44433 46899999998777 332221 122355555544  56899998 788888


Q ss_pred             EEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         228 CWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       228 iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      ++..+.....+..+........+.++.|-++++.++.+..+|.+.++....
T Consensus       153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            887765344455565555567788888876767899999999999998764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1645|consensus

Probab=98.48  E-value=2.6e-06  Score=69.17  Aligned_cols=122  Identities=12%  Similarity=0.151  Sum_probs=91.4

Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCc-EEEeeecCCCeEEEEEc
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGI-LLFSGARKDCEIICWDL  231 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~iwd~  231 (334)
                      .+..+...|.+++|+|..+.++..++.+..|.|.|+++...+..+..+ ..+.+++|.-|.. +|+.|- ..|.|.+||+
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl-~nG~VlvyD~  265 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGL-QNGMVLVYDM  265 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEec-cCceEEEEEc
Confidence            356677889999999998767888999999999999999998888877 7899999988765 566666 8999999999


Q ss_pred             cCCCccceeecccccCCceEEEEe------cCCCceEEeeecCCcEEEEeCCC
Q psy2305         232 RNPGCILHTFPRQVSTNQRVYFDL------TSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~------s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      +.+..++..+.......++..++.      .+.|.+|+....+  +..|++..
T Consensus       266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~  316 (463)
T KOG1645|consen  266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVF  316 (463)
T ss_pred             cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhc
Confidence            987777766665444455544322      2344555554443  56777654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.48  E-value=0.00022  Score=61.41  Aligned_cols=171  Identities=13%  Similarity=0.067  Sum_probs=94.2

Q ss_pred             cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccc-----cceE
Q psy2305          88 PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRK-----NIVS  162 (334)
Q Consensus        88 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~v~  162 (334)
                      .|.+|+. .|+.+..+.-...     .+.++.|+.+..+++...||.+++||+.  +..  ...+......     ..+.
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~-----~iv~~~wt~~e~LvvV~~dG~v~vy~~~--G~~--~fsl~~~i~~~~v~e~~i~  131 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSG-----RIVGMGWTDDEELVVVQSDGTVRVYDLF--GEF--QFSLGEEIEEEKVLECRIF  131 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCC-----CEEEEEECCCCeEEEEEcCCEEEEEeCC--Cce--eechhhhccccCccccccc
Confidence            4899986 5777776655332     8999999998777777789999999987  333  1110111111     1222


Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEECCCCC-ceEeec---c-------CCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305         163 AIAINPVHPDICALGTYSKIIGLFSDSDGR-PLFFLK---G-------HNGGITHLEFSSNGILLFSGARKDCEIICWDL  231 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~-------~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~  231 (334)
                      ...+..+|- .++  ..++.+.+..-.... ..+.+.   .       +........++.+....+... .++.+.+.+-
T Consensus       132 ~~~~~~~Gi-vvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~-~g~~i~~i~~  207 (410)
T PF04841_consen  132 AIWFYKNGI-VVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA-NGETIYIIDE  207 (410)
T ss_pred             ccccCCCCE-EEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe-cCCEEEEEEc
Confidence            223333452 233  334555544322211 111111   1       111000123444444444545 4556664443


Q ss_pred             cCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         232 RNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .. ...   +.   ....+..++.||+|+++|.-..+|.+.+....-.
T Consensus       208 ~~-~~~---i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  208 NS-FKQ---ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             cc-ccc---cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence            32 111   11   1356888999999999999999999998876544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.47  E-value=0.00013  Score=62.91  Aligned_cols=218  Identities=11%  Similarity=0.104  Sum_probs=112.9

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      ...+.++|+|++++++ .||.-.||.....+..                    ..+.-....|       .+.++ +|+-
T Consensus        35 p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k--------------------~~G~g~~~vw-------~~~n~-yAv~   85 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNK--------------------AFGSGLSFVW-------SSRNR-YAVL   85 (443)
T ss_dssp             -SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEE--------------------EEEE-SEEEE--------TSSE-EEEE
T ss_pred             CeeEEECCCCCEEEEE-cCCEEEEEEccCCccc--------------------ccCceeEEEE-------ecCcc-EEEE
Confidence            5789999999999885 5788888884333321                    1233334455       55554 6666


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEE
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSA  163 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~  163 (334)
                      ...++|.++.--+.+..+.++...      .+..+-.   |..|...+++.|.+||..+ ++.+...    .  -.+|..
T Consensus        86 ~~~~~I~I~kn~~~~~~k~i~~~~------~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i----~--v~~vk~  149 (443)
T PF04053_consen   86 ESSSTIKIYKNFKNEVVKSIKLPF------SVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRI----D--VSAVKY  149 (443)
T ss_dssp             -TTS-EEEEETTEE-TT-----SS-------EEEEE----SSSEEEEETTEEEEE-TTT---EEEEE----S--S-E-EE
T ss_pred             ECCCeEEEEEcCccccceEEcCCc------ccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEE----e--cCCCcE
Confidence            668889996422333333444321      2333322   8888888877999999997 5665532    2  124899


Q ss_pred             EEEcCCCCcEEEEeecCCeEEEEECCCC-----------CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         164 IAINPVHPDICALGTYSKIIGLFSDSDG-----------RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      +.|++++. +++..+. ..+.+++....           .....+..-...|.+..|..+  .++..+ .. .++.  +.
T Consensus       150 V~Ws~~g~-~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-~~-~lkY--l~  221 (443)
T PF04053_consen  150 VIWSDDGE-LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-SN-HLKY--LV  221 (443)
T ss_dssp             EEE-TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--TT-EEEE--EE
T ss_pred             EEEECCCC-EEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-CC-eEEE--EE
Confidence            99999999 8887764 46777764322           133333333567889999866  444444 34 7766  33


Q ss_pred             CCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         233 NPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      . +. ...+..-  ..+..=+.+.|+.+.+.....|+.+..+.+..
T Consensus       222 ~-Ge-~~~i~~l--d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  222 N-GE-TGIIAHL--DKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             T-TE-EEEEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             c-CC-cceEEEc--CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            2 22 2222221  12233344567677888888888888887764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4649|consensus

Probab=98.47  E-value=0.00031  Score=54.35  Aligned_cols=101  Identities=13%  Similarity=0.057  Sum_probs=72.6

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW   92 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw   92 (334)
                      ..+++.|+..+.+.--|..++...                .+..-+..+.+-+.-        -|++++.|...|.+++.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~----------------We~ilg~RiE~sa~v--------vgdfVV~GCy~g~lYfl   78 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLI----------------WEAILGVRIECSAIV--------VGDFVVLGCYSGGLYFL   78 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEE----------------eehhhCceeeeeeEE--------ECCEEEEEEccCcEEEE
Confidence            457888899999999999998865                121122333332221        36679999999999999


Q ss_pred             eCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCC
Q psy2305          93 DSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDR  142 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~  142 (334)
                      ++++|.....+...+..+     ......+++..+.+|+ |++.+..|..+
T Consensus        79 ~~~tGs~~w~f~~~~~vk-----~~a~~d~~~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   79 CVKTGSQIWNFVILETVK-----VRAQCDFDGGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             Eecchhheeeeeehhhhc-----cceEEcCCCceEEEecCCCcEEEecccc
Confidence            999998887776544311     2345577888999998 99999999886

>KOG3617|consensus

Probab=98.46  E-value=9.1e-06  Score=72.35  Aligned_cols=106  Identities=13%  Similarity=0.073  Sum_probs=81.2

Q ss_pred             ceecCCCcEEEEee----CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCC
Q psy2305          71 SSIDGFTSYFLCSS----MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGR  145 (334)
Q Consensus        71 ~~~s~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~  145 (334)
                      .+|+|...++++++    +.|.|.||- ++|+..+...-.-      .+++++|+|..-.|+.|. -|.+.+|...+  +
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~------hatSLCWHpe~~vLa~gwe~g~~~v~~~~~--~   91 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV------HATSLCWHPEEFVLAQGWEMGVSDVQKTNT--T   91 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce------ehhhhccChHHHHHhhccccceeEEEecCC--c
Confidence            44567777888775    457888884 5676544333222      467899999988888887 79999999874  3


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS  189 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  189 (334)
                      ....   ....|+.++..+.|+|+|. .++++..-|.+.+|...
T Consensus        92 e~ht---v~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   92 ETHT---VVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eeee---eccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence            3333   4578999999999999999 99999999999999875

>KOG1920|consensus

Probab=98.44  E-value=8e-05  Score=69.07  Aligned_cols=227  Identities=11%  Similarity=0.061  Sum_probs=125.0

Q ss_pred             eeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEE
Q psy2305          59 GIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKI  137 (334)
Q Consensus        59 ~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i  137 (334)
                      ..|.++.|       ..+.+-++.+...|.|.+-|.++......-.. ..     .|.+++|+||++.++... .+++.+
T Consensus        69 ~~i~s~~f-------l~d~~~i~v~~~~G~iilvd~et~~~eivg~v-d~-----GI~aaswS~Dee~l~liT~~~tll~  135 (1265)
T KOG1920|consen   69 DEIVSVQF-------LADTNSICVITALGDIILVDPETLELEIVGNV-DN-----GISAASWSPDEELLALITGRQTLLF  135 (1265)
T ss_pred             cceEEEEE-------ecccceEEEEecCCcEEEEcccccceeeeeec-cC-----ceEEEeecCCCcEEEEEeCCcEEEE
Confidence            36666666       45777788888899999998877654322111 22     899999999999998766 566655


Q ss_pred             EEcCCCCCeeeeecc-cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc-eEeeccCCCCeEEEEEccCCcE
Q psy2305         138 FSTDRPGRECVSRNL-KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP-LFFLKGHNGGITHLEFSSNGIL  215 (334)
Q Consensus       138 ~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~  215 (334)
                      .+-.  -.++...++ .-....+..-.+-|-.... .| -|+ .|...-.+....+. .....-++ .=+++.|--||++
T Consensus       136 mT~~--f~~i~E~~L~~d~~~~sk~v~VGwGrkeT-qf-rgs-~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~  209 (1265)
T KOG1920|consen  136 MTKD--FEPIAEKPLDADDERKSKFVNVGWGRKET-QF-RGS-EGRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEY  209 (1265)
T ss_pred             Eecc--ccchhccccccccccccccceecccccce-ee-ecc-hhhhcccccccccccccchhhcc-CCceEEEccCCcE
Confidence            4332  112111110 0000111222333333222 11 111 12111111111100 01011122 2246999999999


Q ss_pred             EEe-----eecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee---cCCcEEEEeCCCCCCCCCCCc
Q psy2305         216 LFS-----GARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN---TNGDLSIWNVNTSNLPSSPYE  287 (334)
Q Consensus       216 l~~-----~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~  287 (334)
                      +++     .. ..+.|++||-.  +..-..-..  ....-.+++|-|.|..+++..   .|+.|.+|.-+.-..-     
T Consensus       210 fAVs~~~~~~-~~RkirV~drE--g~Lns~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg-----  279 (1265)
T KOG1920|consen  210 FAVSFVESET-GTRKIRVYDRE--GALNSTSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG-----  279 (1265)
T ss_pred             EEEEEEeccC-CceeEEEeccc--chhhcccCc--ccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc-----
Confidence            988     33 23899999987  332111111  123334588999999998763   3567999987654221     


Q ss_pred             cccccccceecccccccceeeeccCCCcccceeeEEe
Q psy2305         288 ESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADAT  324 (334)
Q Consensus       288 ~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t  324 (334)
                          .....+......+..++|  +.++    ..||+
T Consensus       280 ----~f~l~~p~de~~ve~L~W--ns~s----diLAv  306 (1265)
T KOG1920|consen  280 ----EFVLPFPLDEKEVEELAW--NSNS----DILAV  306 (1265)
T ss_pred             ----ccccCCcccccchheeee--cCCC----Cceee
Confidence                223333434445899999  9999    88887

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.44  E-value=2.6e-05  Score=68.48  Aligned_cols=136  Identities=11%  Similarity=-0.059  Sum_probs=89.5

Q ss_pred             eecCCCcEEEEeeCCCcEEEEeCCC-----CeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCC
Q psy2305          72 SIDGFTSYFLCSSMYAPIHLWDSVG-----GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPG  144 (334)
Q Consensus        72 ~~s~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~  144 (334)
                      ++.++|++...+  ++.|.+.|..+     .+.+..+....      ..+.+.++|||+++++++  +.++.++|+.+..
T Consensus       283 a~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGK------sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k  354 (635)
T PRK02888        283 EAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPK------NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD  354 (635)
T ss_pred             HhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCC------CccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence            346688876663  57899999987     35556555433      678999999999999765  8999999998622


Q ss_pred             Ce----------eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC----------CCceEeeccCCCCe
Q psy2305         145 RE----------CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD----------GRPLFFLKGHNGGI  204 (334)
Q Consensus       145 ~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~i  204 (334)
                      ..          +..   ...- .......+|.++|. ...+-..|..|..|++.+          ...+..+.-|-.+-
T Consensus       355 ~~~~~~~~~~~~vva---evev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg  429 (635)
T PRK02888        355 DLFDGKIKPRDAVVA---EPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG  429 (635)
T ss_pred             hhhhccCCccceEEE---eecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence            11          111   1111 22334668999998 888888899999999865          23344443333222


Q ss_pred             E-----EEEEccCCcEEEeee
Q psy2305         205 T-----HLEFSSNGILLFSGA  220 (334)
Q Consensus       205 ~-----~~~~~~~~~~l~~~~  220 (334)
                      .     +=.-.|+|++|++..
T Consensus       430 h~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        430 HNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             eeeecCCCcCCCCCCEEEEcc
Confidence            1     122357788887764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.43  E-value=0.00067  Score=56.76  Aligned_cols=222  Identities=11%  Similarity=0.143  Sum_probs=128.1

Q ss_pred             CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC----CCcEEEEeeC----------CCc
Q psy2305          23 NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG----FTSYFLCSSM----------YAP   88 (334)
Q Consensus        23 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~----~~~~l~~~~~----------d~~   88 (334)
                      ..|++.|..+.+..              ..+.....+.+.+++.    +.+..    ...+|++|..          .|.
T Consensus         2 s~i~l~d~~~~~~~--------------~~~~l~~~E~~~s~~~----~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr   63 (321)
T PF03178_consen    2 SSIRLVDPTTFEVL--------------DSFELEPNEHVTSLCS----VKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR   63 (321)
T ss_dssp             -EEEEEETTTSSEE--------------EEEEEETTEEEEEEEE----EEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred             cEEEEEeCCCCeEE--------------EEEECCCCceEEEEEE----EEEcCccccccCEEEEEecccccccccccCcE
Confidence            36888888877765              3555556667777665    23333    2567777642          288


Q ss_pred             EEEEeCCCC----eeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEE
Q psy2305          89 IHLWDSVGG----EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAI  164 (334)
Q Consensus        89 i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~  164 (334)
                      |.++++.+.    ..+..+.....   .++|++++--  +..|+++.++.|.+|++... +.+...  ........+.++
T Consensus        64 i~v~~i~~~~~~~~~l~~i~~~~~---~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~-~~l~~~--~~~~~~~~i~sl  135 (321)
T PF03178_consen   64 ILVFEISESPENNFKLKLIHSTEV---KGPVTAICSF--NGRLVVAVGNKLYVYDLDNS-KTLLKK--AFYDSPFYITSL  135 (321)
T ss_dssp             EEEEEECSS-----EEEEEEEEEE---SS-EEEEEEE--TTEEEEEETTEEEEEEEETT-SSEEEE--EEE-BSSSEEEE
T ss_pred             EEEEEEEcccccceEEEEEEEEee---cCcceEhhhh--CCEEEEeecCEEEEEEccCc-ccchhh--heecceEEEEEE
Confidence            999999874    22222222122   2278888766  34587787899999999963 313221  222233356666


Q ss_pred             EEcCCCCcEEEEeecCCeEEEEECCC-CCceEeec--cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC------C
Q psy2305         165 AINPVHPDICALGTYSKIIGLFSDSD-GRPLFFLK--GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP------G  235 (334)
Q Consensus       165 ~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~------~  235 (334)
                      ...  ++ ++++|.....+.++..+. ++.+..+.  .....++++.|-++++.++.+. .+|.+.++.....      +
T Consensus       136 ~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D-~~gnl~~l~~~~~~~~~~~~  211 (321)
T PF03178_consen  136 SVF--KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD-KDGNLFVLRYNPEIPNSRDG  211 (321)
T ss_dssp             EEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE-TTSEEEEEEE-SS-SSTTTT
T ss_pred             ecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc-CCCeEEEEEECCCCcccccc
Confidence            655  44 899998888888875543 22233332  2345688888887777888888 8999999988631      1


Q ss_pred             c-cceeecccccCCceEEE---EecCC--C------ceEEeeecCCcEEEE
Q psy2305         236 C-ILHTFPRQVSTNQRVYF---DLTSC--S------NYLLSGNTNGDLSIW  274 (334)
Q Consensus       236 ~-~~~~~~~~~~~~~~~~~---~~s~~--~------~~l~~~~~dg~i~iw  274 (334)
                      . .+........+..+.++   .+.|.  +      ..++.++.+|.|...
T Consensus       212 ~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  212 DPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             TTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            1 12222222234556665   44452  2      247778889988843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG0882|consensus

Probab=98.42  E-value=3.5e-06  Score=69.42  Aligned_cols=205  Identities=12%  Similarity=0.040  Sum_probs=137.2

Q ss_pred             ceeEEEEcCCCCEEEEee-CCcEEEEEcCC-CCCeeeeecccccccccceEEEEEcCCCCcEEEEeec-CCeEEEEECCC
Q psy2305         114 HAYSLAFSLDGNKIYAGF-LSEVKIFSTDR-PGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY-SKIIGLFSDSD  190 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  190 (334)
                      .|+.+.- .-.+++.+++ ||.++.|--.. .+-....   .+..|-..+.+++.+-++. ++.+.+. |..++++|+++
T Consensus        11 ~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVK---hFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen   11 VITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVK---HFRAHLGVILSLAVSYDGW-LFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             eeeeEee-ehhheEEeeecchhhhhcCCCCccceeehh---hhHHHHHHHHhhhccccce-eEeeccCcccceeEEEeec
Confidence            3444432 3346788888 99999998663 2333322   5677888999999999998 8888777 99999999987


Q ss_pred             CCceEeec--cCCCCeEEEEEccCC--cEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee
Q psy2305         191 GRPLFFLK--GHNGGITHLEFSSNG--ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN  266 (334)
Q Consensus       191 ~~~~~~~~--~~~~~i~~~~~~~~~--~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  266 (334)
                      -..+..++  --.+.+ +...+|..  ..|++....++.+.++|-.....+...+. ..+..++..+.+.+-+..+++..
T Consensus        86 ~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk-klH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   86 FDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK-KLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             cchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec-ccccCceEEEEeeccccceeecc
Confidence            65443322  122222 22223321  14555554789999999987444443333 23467888889999999999999


Q ss_pred             cCCcEEEEeCCCCCCCCCCCcccc-----ccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         267 TNGDLSIWNVNTSNLPSSPYEESV-----QEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       267 ~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ..|.|.-|..+.  ..+.|.....     ...+..+........++.|  +|++    ..+++-+.|..|.+
T Consensus       164 ~~gmVEyWs~e~--~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef--sp~g----~qistl~~DrkVR~  227 (558)
T KOG0882|consen  164 ISGMVEYWSAEG--PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF--SPDG----AQISTLNPDRKVRG  227 (558)
T ss_pred             ccceeEeecCCC--cccCccccccccccccchhhcccccccCccceEE--cccc----CcccccCcccEEEE
Confidence            999999998874  1111221111     1223334444567889999  9999    99999999988865

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.42  E-value=0.00021  Score=56.55  Aligned_cols=193  Identities=11%  Similarity=0.028  Sum_probs=105.2

Q ss_pred             ceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC
Q psy2305         114 HAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG  191 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  191 (334)
                      .+..++|+|+...|++..  .+.|..++.+  ++.+...+  +.+ .+..-+|++..++. ++++...++.+.++++...
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~--l~g-~~D~EgI~y~g~~~-~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIP--LDG-FGDYEGITYLGNGR-YVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE---SS--SSEEEEEE-STTE-EEEEETTTTEEEEEEE---
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEe--CCC-CCCceeEEEECCCE-EEEEEcCCCcEEEEEEecc
Confidence            689999999987777654  5666666654  77776543  233 45678899988886 6666666899999998432


Q ss_pred             C-c-----eEee-----ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC--CCccceeec------ccccCCceEE
Q psy2305         192 R-P-----LFFL-----KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN--PGCILHTFP------RQVSTNQRVY  252 (334)
Q Consensus       192 ~-~-----~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~--~~~~~~~~~------~~~~~~~~~~  252 (334)
                      . .     ...+     ..++..+-.++|.|.++.|+++- +..-..+|.++.  ....+....      .......+.+
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~  175 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG  175 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence            1 1     1112     12445689999999888887777 666667777763  111111111      1111223556


Q ss_pred             EEecCC-CceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee--cc-c------ccccceeeeccCCCcccceeeE
Q psy2305         253 FDLTSC-SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF--SA-H------QDCTNGVRWKHHKFERDLLVAD  322 (334)
Q Consensus       253 ~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~-~------~~~i~~~~~~~s~~~~~~~~~l  322 (334)
                      +.++|. +++++....+..|..+|...             +++..+  .. .      -...-.|+|  .++|    ++.
T Consensus       176 l~~~p~t~~lliLS~es~~l~~~d~~G-------------~~~~~~~L~~g~~gl~~~~~QpEGIa~--d~~G----~LY  236 (248)
T PF06977_consen  176 LSYDPRTGHLLILSDESRLLLELDRQG-------------RVVSSLSLDRGFHGLSKDIPQPEGIAF--DPDG----NLY  236 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE-TT---------------EEEEEE-STTGGG-SS---SEEEEEE---TT------EE
T ss_pred             eEEcCCCCeEEEEECCCCeEEEECCCC-------------CEEEEEEeCCcccCcccccCCccEEEE--CCCC----CEE
Confidence            778885 45666667778888888443             333222  21 1      124578999  9998    544


Q ss_pred             Eeeecceeeee
Q psy2305         323 ATCSGQITNVK  333 (334)
Q Consensus       323 ~t~~~d~~i~~  333 (334)
                       ..|+-+.+++
T Consensus       237 -IvsEpNlfy~  246 (248)
T PF06977_consen  237 -IVSEPNLFYR  246 (248)
T ss_dssp             -EEETTTEEEE
T ss_pred             -EEcCCceEEE
Confidence             4445555543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621|consensus

Probab=98.41  E-value=7.6e-06  Score=71.24  Aligned_cols=149  Identities=13%  Similarity=0.067  Sum_probs=98.3

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCee--eee
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGREC--VSR  150 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~--~~~  150 (334)
                      +..+++++.|+.-|.+++|+-..++.. .++....   .+.+.....+++..++|+|+ .|.|.++.++......  ...
T Consensus        42 dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~---~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t  117 (726)
T KOG3621|consen   42 DATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGA---TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT  117 (726)
T ss_pred             ecCCceEEEecccceEEEEecCchhhh-cccccCc---cceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence            568899999999999999997665543 3332111   11566677788887778777 8999999887622221  111


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC----CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG----RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEI  226 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i  226 (334)
                      + .-..|+..|++++|++++. .+++|...|+|.+-.+.+.    ...+.+....+.|..+.+. ++ +|++++ .-. -
T Consensus       118 ~-~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~-~LLVSt-l~r-~  191 (726)
T KOG3621|consen  118 P-CDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QS-YLLVST-LTR-C  191 (726)
T ss_pred             c-ccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cc-eehHhh-hhh-h
Confidence            1 1234788999999999999 9999999999999888762    1223333345677777765 23 444443 222 3


Q ss_pred             EEEEcc
Q psy2305         227 ICWDLR  232 (334)
Q Consensus       227 ~iwd~~  232 (334)
                      .+++.+
T Consensus       192 ~Lc~tE  197 (726)
T KOG3621|consen  192 ILCQTE  197 (726)
T ss_pred             heeecc
Confidence            345554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.41  E-value=0.00068  Score=55.61  Aligned_cols=217  Identities=15%  Similarity=0.074  Sum_probs=122.1

Q ss_pred             ecCCCc-EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeec
Q psy2305          73 IDGFTS-YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        73 ~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~  151 (334)
                      |.++.. ++.+--..+.|.-|+..+++.. .+....      .+.++..-..+..|+++. ..+.+++.+. +.......
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~------~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~-~~~~t~~~  102 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPG------GFSSGALIDAGGRLIACE-HGVRLLDPDT-GGKITLLA  102 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCC------CcccceeecCCCeEEEEc-cccEEEeccC-CceeEEec
Confidence            355655 4444456678888888766443 232222      334444444444455443 2355666654 33211111


Q ss_pred             ccccc-cccceEEEEEcCCCCcEEEEeecC------------CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEe
Q psy2305         152 LKPWF-RKNIVSAIAINPVHPDICALGTYS------------KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       152 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  218 (334)
                      ....+ .....+.+...|+|. +.+ +...            |.|+.+|. .+..++.+..+-..-+.|+||||++.|+.
T Consensus       103 ~~~~~~~~~r~ND~~v~pdG~-~wf-gt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~  179 (307)
T COG3386         103 EPEDGLPLNRPNDGVVDPDGR-IWF-GDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             cccCCCCcCCCCceeEcCCCC-EEE-eCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEE
Confidence            01112 224567888999998 333 3222            33555554 45566666655555678999999998888


Q ss_pred             eecCCCeEEEEEccC-CCcc---ceeecccccCCceEEEEecCCCceEEeeecCC-cEEEEeCCCCCCCCCCCccccccc
Q psy2305         219 GARKDCEIICWDLRN-PGCI---LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG-DLSIWNVNTSNLPSSPYEESVQEP  293 (334)
Q Consensus       219 ~~~~d~~i~iwd~~~-~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~  293 (334)
                      +-...+.|..|++.. .+..   ...+.........-.++...+|.+.+++-.+| .|.+|+.. +            +.
T Consensus       180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G------------~l  246 (307)
T COG3386         180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G------------KL  246 (307)
T ss_pred             EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C------------cE
Confidence            763458888887762 1111   10111111223333456677888876555554 89999998 5            56


Q ss_pred             cceecccccccceeeeccCCCc
Q psy2305         294 LYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      +..+.-....+++++|- .|+.
T Consensus       247 ~~~i~lP~~~~t~~~Fg-G~~~  267 (307)
T COG3386         247 LGEIKLPVKRPTNPAFG-GPDL  267 (307)
T ss_pred             EEEEECCCCCCccceEe-CCCc
Confidence            67766665778888982 3444

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.40  E-value=0.00078  Score=56.06  Aligned_cols=222  Identities=12%  Similarity=0.056  Sum_probs=104.1

Q ss_pred             EEcCCCcEEEEee-CC--CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee
Q psy2305           8 DEAPDGTCLLTNS-ND--NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS   84 (334)
Q Consensus         8 ~~sp~~~~l~~~~-~d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~   84 (334)
                      +|.+||+.|+.++ .|  ..+.+.|+.+++..+               +..+.......       ..++|+++.++...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q---------------LTdg~g~~~~g-------~~~s~~~~~~~Yv~   99 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ---------------LTDGPGDNTFG-------GFLSPDDRALYYVK   99 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE------------------SS-B-TTT--------EE-TTSSEEEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE---------------CccCCCCCccc-------eEEecCCCeEEEEE
Confidence            5778997766655 34  466777888887652               22211111111       22367778777665


Q ss_pred             CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEE--cCCCCEEEEee----CC-------------------cEEEEE
Q psy2305          85 MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAF--SLDGNKIYAGF----LS-------------------EVKIFS  139 (334)
Q Consensus        85 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~----d~-------------------~i~i~d  139 (334)
                      ....|+-.|+++.+....+.....     .+-...|  +.|+..++...    +.                   .|.-.|
T Consensus       100 ~~~~l~~vdL~T~e~~~vy~~p~~-----~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id  174 (386)
T PF14583_consen  100 NGRSLRRVDLDTLEERVVYEVPDD-----WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID  174 (386)
T ss_dssp             TTTEEEEEETTT--EEEEEE--TT-----EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred             CCCeEEEEECCcCcEEEEEECCcc-----cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence            566888889999887666665443     3333444  45666665321    11                   233445


Q ss_pred             cCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC---C-eEEEEECCC-CCceEeeccCC--CCeEEEEEccC
Q psy2305         140 TDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS---K-IIGLFSDSD-GRPLFFLKGHN--GGITHLEFSSN  212 (334)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~i~d~~~-~~~~~~~~~~~--~~i~~~~~~~~  212 (334)
                      +.+ +. ..    .+......+..+.|+|....+|+.|.+.   . .-+||-+++ +.....+..+.  ..+..=-|.||
T Consensus       175 l~t-G~-~~----~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~D  248 (386)
T PF14583_consen  175 LKT-GE-RK----VVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPD  248 (386)
T ss_dssp             TTT----EE----EEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TT
T ss_pred             CCC-Cc-ee----EEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCC
Confidence            554 22 22    2333456678899999988556555432   1 235665543 33344443332  22334458999


Q ss_pred             CcEEEeeec----CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeec
Q psy2305         213 GILLFSGAR----KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT  267 (334)
Q Consensus       213 ~~~l~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  267 (334)
                      |..|..-+.    .+..|.-+|+.+ +.... +..   ......+..++||++++-=+.
T Consensus       249 G~~i~y~~~~~~~~~~~i~~~d~~t-~~~~~-~~~---~p~~~H~~ss~Dg~L~vGDG~  302 (386)
T PF14583_consen  249 GSTIWYDSYTPGGQDFWIAGYDPDT-GERRR-LME---MPWCSHFMSSPDGKLFVGDGG  302 (386)
T ss_dssp             SS-EEEEEEETTT--EEEEEE-TTT---EEE-EEE---E-SEEEEEE-TTSSEEEEEE-
T ss_pred             CCEEEEEeecCCCCceEEEeeCCCC-CCceE-EEe---CCceeeeEEcCCCCEEEecCC
Confidence            987654321    244677777776 33221 211   113445667899988874333

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.36  E-value=0.00065  Score=60.22  Aligned_cols=236  Identities=11%  Similarity=0.125  Sum_probs=128.1

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee---------
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS---------   84 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~---------   84 (334)
                      ..++.++.++.|.-+|.++++..-.+......             ..-..+.-.|   .+. + .+++.++         
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~-------------~~~~~i~ssP---~v~-~-~~v~vg~~~~~~~~~~  172 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV-------------PPGYTMTGAP---TIV-K-KLVIIGSSGAEFFACG  172 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCc-------------CcceEecCCC---EEE-C-CEEEEeccccccccCC
Confidence            57778888999999999999876322111000             0000011111   111 2 3344443         


Q ss_pred             CCCcEEEEeCCCCeeeEEEcCccccccc---------------cce-eEEEEcCCCCEEEEee-CC--------------
Q psy2305          85 MYAPIHLWDSVGGEIKATYRPYNQVDEV---------------THA-YSLAFSLDGNKIYAGF-LS--------------  133 (334)
Q Consensus        85 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~---------------~~v-~~~~~~~~~~~l~~~~-d~--------------  133 (334)
                      .++.+.-+|.++|+.+..++........               ..+ ...++.+.+..++.+. ++              
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~  252 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN  252 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence            3678888999999988776542110000               011 1344555556666654 44              


Q ss_pred             ----cEEEEEcCCCCCeeeeecccccccc--------cce-EEEEEcCCCC--cEEEEeecCCeEEEEECCCCCceEeec
Q psy2305         134 ----EVKIFSTDRPGRECVSRNLKPWFRK--------NIV-SAIAINPVHP--DICALGTYSKIIGLFSDSDGRPLFFLK  198 (334)
Q Consensus       134 ----~i~i~d~~~~~~~~~~~~~~~~~~~--------~~v-~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~  198 (334)
                          .+.-+|..+ ++..-...  ...+.        .++ ..+. .-++.  ..++.++.+|.+..+|.++++.+-...
T Consensus       253 ~~~~~l~Ald~~t-G~~~W~~~--~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         253 LYTDSIVALDADT-GKVKWFYQ--TTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP  328 (488)
T ss_pred             CceeeEEEEcCCC-CCEEEEee--CCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence                688889887 55554321  11111        111 1111 01221  257778899999999999999887654


Q ss_pred             cCCCCeEEEEEccCCcEEEee------------------ecCCCeEEEEEccCCCccceeecccccC------Cce--EE
Q psy2305         199 GHNGGITHLEFSSNGILLFSG------------------ARKDCEIICWDLRNPGCILHTFPRQVST------NQR--VY  252 (334)
Q Consensus       199 ~~~~~i~~~~~~~~~~~l~~~------------------~~~d~~i~iwd~~~~~~~~~~~~~~~~~------~~~--~~  252 (334)
                      ..   ...++.+| + .++.+                  . .+|.+.-.|..+ ++.+.+.......      ...  ..
T Consensus       329 ~~---~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~-~~G~l~AlD~~t-G~~~W~~~~~~~~~~~~~g~~~~~~~  401 (488)
T cd00216         329 EV---EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKP-GKGGLAALDPKT-GKVVWEKREGTIRDSWNIGFPHWGGS  401 (488)
T ss_pred             ee---ccccccCC-c-eEEEccccccccCcccccCCCCCC-CceEEEEEeCCC-CcEeeEeeCCccccccccCCcccCcc
Confidence            21   11233444 2 23221                  2 357788888877 6655554422000      011  11


Q ss_pred             EEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         253 FDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       253 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      +.  ..+..|+.++.||.|+.+|.++++
T Consensus       402 ~~--~~g~~v~~g~~dG~l~ald~~tG~  427 (488)
T cd00216         402 LA--TAGNLVFAGAADGYFRAFDATTGK  427 (488)
T ss_pred             eE--ecCCeEEEECCCCeEEEEECCCCc
Confidence            11  246788888899999999999993

The alignment model contains an 8-bladed beta-propeller.

>KOG4649|consensus

Probab=98.33  E-value=0.00073  Score=52.34  Aligned_cols=142  Identities=8%  Similarity=-0.023  Sum_probs=92.7

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccc
Q psy2305          77 TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        77 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      ..+++.|+..+.+.--|.++|.....-....      ++.+-+.- -|.+++.|. .|.+.+.+..+ +..+..    +.
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t-Gs~~w~----f~   90 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV------RIECSAIV-VGDFVVLGCYSGGLYFLCVKT-GSQIWN----FV   90 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCc------eeeeeeEE-ECCEEEEEEccCcEEEEEecc-hhheee----ee
Confidence            4567788888989889999998775543222      23322222 356777776 99999999998 555543    11


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      ....-=......+++. ++..|+.|++.+..|.++..++.+.+...+.-.+-+..|-...|+.+. ..|.+.--..+
T Consensus        91 ~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~-t~G~vlavt~~  165 (354)
T KOG4649|consen   91 ILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI-TAGAVLAVTKN  165 (354)
T ss_pred             ehhhhccceEEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe-ccceEEEEccC
Confidence            1111112334678888 999999999999999999999988775555445566666333444455 45655444443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.31  E-value=0.00057  Score=58.26  Aligned_cols=254  Identities=11%  Similarity=0.022  Sum_probs=127.5

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCcee--eeeCC---------------------CCCCCC----cc-eeee
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCK--SVWRP---------------------SNQRPK----LN-YTLK   54 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~--~~~~~---------------------~~~~~~----~~-~~~~   54 (334)
                      .|..+.|+++..-|++|...|.|.||.+...+.-.  .....                     ....+.    +. ..+-
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            48899999998889999999999999876543321  00000                     000011    11 1111


Q ss_pred             eeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCcc---ccccccceeEEEEcC-----CC--
Q psy2305          55 IKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYN---QVDEVTHAYSLAFSL-----DG--  124 (334)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~-----~~--  124 (334)
                      ....++|.+++-       | |=-+++.|..+|.+.|.|++....+..-....   .......++++.|.-     |+  
T Consensus        83 ~~~~g~vtal~~-------S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   83 DAKQGPVTALKN-------S-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             ---S-SEEEEEE---------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             eccCCcEeEEec-------C-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence            122456666554       3 44589999999999999998877765533222   111122677888862     33  


Q ss_pred             -CEEEEee-CCcEEEEEcCC-CCCeee-eecccccccccceEEEE-EcCC-C-------------------CcEEEEeec
Q psy2305         125 -NKIYAGF-LSEVKIFSTDR-PGRECV-SRNLKPWFRKNIVSAIA-INPV-H-------------------PDICALGTY  179 (334)
Q Consensus       125 -~~l~~~~-d~~i~i~d~~~-~~~~~~-~~~~~~~~~~~~v~~~~-~~~~-~-------------------~~~l~~~~~  179 (334)
                       -.|++|. .|.+.+|.+.- .+.... ...-....+.+++..+. ++.+ |                   + -+++...
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~-g~vVvvS  233 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIP-GYVVVVS  233 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-----EEEEEE-
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC-cEEEEEc
Confidence             3566776 79999998752 112111 11001123455555554 3222 1                   1 2334445


Q ss_pred             CCeEEEEECCCCCceEeeccCCCCeEEEEEc-----cCCcEEEeeecCCCeEEEEEccCCCccceeecccc--cCCceEE
Q psy2305         180 SKIIGLFSDSDGRPLFFLKGHNGGITHLEFS-----SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV--STNQRVY  252 (334)
Q Consensus       180 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~  252 (334)
                      +..++++...+.+..+......-....+.+-     ..+..|++-. .+|.+++|.+.. -+.+....-..  .......
T Consensus       234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~-Lkei~~~~l~~~~d~~~~~~  311 (395)
T PF08596_consen  234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPS-LKEIKSVSLPPPLDSRRLSS  311 (395)
T ss_dssp             SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT---EEEEEE-SS---HHHHTT
T ss_pred             ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCC-chHhhcccCCCccccccccc
Confidence            7789999998877665554222233344552     3566777788 899999999986 44444433211  1111223


Q ss_pred             EEecCCCceEEeeec
Q psy2305         253 FDLTSCSNYLLSGNT  267 (334)
Q Consensus       253 ~~~s~~~~~l~~~~~  267 (334)
                      ..++++|..++-.+.
T Consensus       312 ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  312 SSISRNGDIFYWTGP  326 (395)
T ss_dssp             -EE-TTS-EEEE-SS
T ss_pred             cEECCCCCEEEEeCc
Confidence            456889987776654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395|consensus

Probab=98.29  E-value=8.5e-05  Score=62.98  Aligned_cols=146  Identities=15%  Similarity=0.147  Sum_probs=102.9

Q ss_pred             CCcEE-EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC--------EEEEeeCCcEEEEEcCCCCCe
Q psy2305          76 FTSYF-LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN--------KIYAGFLSEVKIFSTDRPGRE  146 (334)
Q Consensus        76 ~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~l~~~~d~~i~i~d~~~~~~~  146 (334)
                      +.++| ..+.....++-.|++.|+.+.....+.      .|.-+.+.|+.+        .|+.-+++.|.-||++..+..
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~  417 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFED------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN  417 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccC------CcceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence            34444 344455568888999999998887654      467777888753        223235899999999975553


Q ss_pred             eeeec-ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC-ceEeeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305         147 CVSRN-LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR-PLFFLKGHNGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       147 ~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                      ..... ...........|++-..+|  ++++|+.+|.|++||- .+. ...-+++-..+|..+..+.+|++|+..+  +.
T Consensus       418 kl~~~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~t  492 (644)
T KOG2395|consen  418 KLAVVQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KT  492 (644)
T ss_pred             eeeeeeccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--cc
Confidence            22100 0112223456777777777  7999999999999996 543 3444677888999999999999998776  78


Q ss_pred             eEEEEEcc
Q psy2305         225 EIICWDLR  232 (334)
Q Consensus       225 ~i~iwd~~  232 (334)
                      ++.+.++.
T Consensus       493 yLlLi~t~  500 (644)
T KOG2395|consen  493 YLLLIDTL  500 (644)
T ss_pred             EEEEEEEe
Confidence            88888775

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.21  E-value=0.0036  Score=55.59  Aligned_cols=209  Identities=9%  Similarity=0.056  Sum_probs=112.3

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW   92 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw   92 (334)
                      +..++.++.++.|.-.|..+++..-..........         ....+..     ..+++. ++..++.++.++.|.-+
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~---------~~~~~~~-----~g~~~~-~~~~V~v~~~~g~v~Al  125 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADR---------GCCDVVN-----RGVAYW-DPRKVFFGTFDGRLVAL  125 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccc---------ccccccc-----CCcEEc-cCCeEEEecCCCeEEEE
Confidence            34567777789999999998876522111100000         0000000     001111 22567778889999999


Q ss_pred             eCCCCeeeEEEcCcccccccccee-EEEEcCCCCEEEEee----------CCcEEEEEcCCCCCeeeeeccccc------
Q psy2305          93 DSVGGEIKATYRPYNQVDEVTHAY-SLAFSLDGNKIYAGF----------LSEVKIFSTDRPGRECVSRNLKPW------  155 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~------  155 (334)
                      |.++|+.+..+...........+. ...+. + ..++.++          ++.+..+|..+ ++..-.......      
T Consensus       126 D~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~T-G~~~W~~~~~~~~~~~~~  202 (488)
T cd00216         126 DAETGKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVET-GKLLWRFYTTEPDPNAFP  202 (488)
T ss_pred             ECCCCCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCC-CceeeEeeccCCCcCCCC
Confidence            999999988776533210000011 11111 2 3344332          46788888887 555443211000      


Q ss_pred             c---------cc-cce-EEEEEcCCCCcEEEEeecCC------------------eEEEEECCCCCceEeeccCCCCe--
Q psy2305         156 F---------RK-NIV-SAIAINPVHPDICALGTYSK------------------IIGLFSDSDGRPLFFLKGHNGGI--  204 (334)
Q Consensus       156 ~---------~~-~~v-~~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~i--  204 (334)
                      .         +. ..+ ...++.+.+. .++.++.++                  .|.-+|.++++..-.++.-....  
T Consensus       203 ~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~  281 (488)
T cd00216         203 TWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWD  281 (488)
T ss_pred             CCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcc
Confidence            0         00 001 1345555555 677776555                  79999999999887764211111  


Q ss_pred             ----EEEEEc----cCCc---EEEeeecCCCeEEEEEccCCCccceeec
Q psy2305         205 ----THLEFS----SNGI---LLFSGARKDCEIICWDLRNPGCILHTFP  242 (334)
Q Consensus       205 ----~~~~~~----~~~~---~l~~~~~~d~~i~iwd~~~~~~~~~~~~  242 (334)
                          ....+.    -+|.   .++.++ .+|.+...|.++ ++.+....
T Consensus       282 ~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~t-G~~~W~~~  328 (488)
T cd00216         282 YDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTT-GKLISARP  328 (488)
T ss_pred             cccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCC-CcEeeEeE
Confidence                011111    1333   577777 799999999998 77666544

The alignment model contains an 8-bladed beta-propeller.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.16  E-value=0.00028  Score=47.42  Aligned_cols=105  Identities=21%  Similarity=0.163  Sum_probs=65.9

Q ss_pred             EEEEEEecccceecCCC-cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEE
Q psy2305          61 IYDYVWYPKTSSIDGFT-SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFS  139 (334)
Q Consensus        61 v~~~~~~~~~~~~s~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d  139 (334)
                      |.+++..    .|..+| +.|++|+.|..|++|+  ..+.+..+....      .|.+++-...+++.+.-.+|+|-+|+
T Consensus         2 V~al~~~----d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~------~v~~L~~~~~~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLF----DFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETD------KVTSLCSLGGGRFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEE----ecCCCCcceEEEecCCcEEEEEe--CCcEEEEEeccc------ceEEEEEcCCCEEEEEecCCEEEEEe
Confidence            4555552    234443 4699999999999998  345666666533      78888888775544444599999998


Q ss_pred             cCCCCCeeeeecccccccccceEEEEE---cCCCCcEEEEeecCCeEEE
Q psy2305         140 TDRPGRECVSRNLKPWFRKNIVSAIAI---NPVHPDICALGTYSKIIGL  185 (334)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~i~i  185 (334)
                      -.  .+..+.     + .+..+.++.+   +.+|...|++|-.+|.|-+
T Consensus        70 ~~--~RlWRi-----K-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   70 RS--QRLWRI-----K-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             Cc--ceeeee-----c-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            65  233221     1 1223444443   4445447888988888743

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.16  E-value=0.00028  Score=47.38  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=66.0

Q ss_pred             EcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc
Q psy2305         166 INPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV  245 (334)
Q Consensus       166 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~  245 (334)
                      |..+|.+.|++|+.|..|++|+-  .+.+..+.. ...|.++.-...+ .++.+. .+|+|-+|+-..   .+.+.+.. 
T Consensus        10 ~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~-~F~Y~l-~NGTVGvY~~~~---RlWRiKSK-   80 (111)
T PF14783_consen   10 FDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGG-RFAYAL-ANGTVGVYDRSQ---RLWRIKSK-   80 (111)
T ss_pred             cCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCC-EEEEEe-cCCEEEEEeCcc---eeeeeccC-
Confidence            45566678999999999999994  466777763 4567788777664 577777 799999997642   34444432 


Q ss_pred             cCCceEEEE---ecCCC-ceEEeeecCCcEEE
Q psy2305         246 STNQRVYFD---LTSCS-NYLLSGNTNGDLSI  273 (334)
Q Consensus       246 ~~~~~~~~~---~s~~~-~~l~~~~~dg~i~i  273 (334)
                        ..+.++.   +..|| ..|++|-.+|.|-+
T Consensus        81 --~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   81 --NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             --CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence              2344443   33334 47889988998743

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.11  E-value=0.0049  Score=53.24  Aligned_cols=87  Identities=11%  Similarity=0.096  Sum_probs=53.1

Q ss_pred             EcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc
Q psy2305         166 INPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV  245 (334)
Q Consensus       166 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~  245 (334)
                      ++.+.. ..+....++.+.+.+-...+.   +. ..+++..|+.||+|++|+.-. .+|.+.+....- .+.+..+... 
T Consensus       186 l~~~~~-~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t-~~g~l~v~ssDf-~~~~~e~~~~-  257 (410)
T PF04841_consen  186 LSSDRV-VEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFT-DSGNLWVVSSDF-SEKLCEFDTD-  257 (410)
T ss_pred             eecCcc-eEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEE-CCCCEEEEECcc-cceeEEeecC-
Confidence            444444 444445556666555332211   22 246899999999999999999 899999887654 4444444433 


Q ss_pred             cCCceEEEEecCCCc
Q psy2305         246 STNQRVYFDLTSCSN  260 (334)
Q Consensus       246 ~~~~~~~~~~s~~~~  260 (334)
                      .......+.|.-+..
T Consensus       258 ~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  258 SKSPPKQMAWCGNDA  272 (410)
T ss_pred             cCCCCcEEEEECCCc
Confidence            123445566665543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.09  E-value=0.0056  Score=53.30  Aligned_cols=243  Identities=15%  Similarity=0.085  Sum_probs=125.8

Q ss_pred             eeEEEEcCCCcEEEEe-eCC----CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc
Q psy2305           4 EEDVDEAPDGTCLLTN-SND----NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~-~~d----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      +...++||||++||.+ +..    ..++++|+.+++...             ..+..   ..-..+.|       .++++
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-------------d~i~~---~~~~~~~W-------~~d~~  182 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-------------DGIEN---PKFSSVSW-------SDDGK  182 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-------------EEEEE---EESEEEEE-------CTTSS
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-------------Ccccc---cccceEEE-------eCCCC
Confidence            4467899999998865 222    469999999997541             11111   11112455       77887


Q ss_pred             EEEEeeCCC-----------cEEEEeCCCCeee--EEEcCccccccccceeEEEEcCCCCEEEEe--e--C-CcEEEEEc
Q psy2305          79 YFLCSSMYA-----------PIHLWDSVGGEIK--ATYRPYNQVDEVTHAYSLAFSLDGNKIYAG--F--L-SEVKIFST  140 (334)
Q Consensus        79 ~l~~~~~d~-----------~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~--d-~~i~i~d~  140 (334)
                      .|+....+.           .|..|.+.+....  ..++......   ....+..++|+++|+..  +  + ..+.+.++
T Consensus       183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~---~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~  259 (414)
T PF02897_consen  183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPF---WFVSVSRSKDGRYLFISSSSGTSESEVYLLDL  259 (414)
T ss_dssp             EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTT---SEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred             EEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCc---EEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence            776654332           3788888765432  4444433210   25688899999998843  2  3 46777787


Q ss_pred             CCC---CCeeeeecccccccccce-EEEEEcCCCCcEEEEee---cCCeEEEEECCCCCc---eEeeccCCCCeEEEEEc
Q psy2305         141 DRP---GRECVSRNLKPWFRKNIV-SAIAINPVHPDICALGT---YSKIIGLFSDSDGRP---LFFLKGHNGGITHLEFS  210 (334)
Q Consensus       141 ~~~---~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~  210 (334)
                      ...   .....    .+......+ ..+... .+. +++...   .++.|.-.++.+...   ...+..+...+.-..+.
T Consensus       260 ~~~~~~~~~~~----~l~~~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~  333 (414)
T PF02897_consen  260 DDGGSPDAKPK----LLSPREDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS  333 (414)
T ss_dssp             CCTTTSS-SEE----EEEESSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred             cccCCCcCCcE----EEeCCCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence            752   11222    222223333 333333 443 444332   346788888877653   22454455533333333


Q ss_pred             cCCcEEEeeecCCC--eEEEEEccCCCccceeecccccCCceEEEEecCCCceEE-ee-ec--CCcEEEEeCCCCC
Q psy2305         211 SNGILLFSGARKDC--EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLL-SG-NT--NGDLSIWNVNTSN  280 (334)
Q Consensus       211 ~~~~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~-~~--dg~i~iwd~~~~~  280 (334)
                      ..+.+|+...+.++  .|+++++.. +.....+... ..+.+..+...+++..+. .. +.  -+++..||+.+++
T Consensus       334 ~~~~~Lvl~~~~~~~~~l~v~~~~~-~~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  334 LFKDYLVLSYRENGSSRLRVYDLDD-GKESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EETTEEEEEEEETTEEEEEEEETT--TEEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             EECCEEEEEEEECCccEEEEEECCC-CcEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            44555555443454  477788772 3333333322 133344454455554433 22 22  3678888998873

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.09  E-value=0.0038  Score=51.31  Aligned_cols=223  Identities=13%  Similarity=0.077  Sum_probs=121.2

Q ss_pred             EEcCCCcEE-EEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC
Q psy2305           8 DEAPDGTCL-LTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY   86 (334)
Q Consensus         8 ~~sp~~~~l-~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d   86 (334)
                      .|.++...| .+--..+.|.-|+..+++..               .+..  ...+.+..      .++..+ .|+++. .
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~---------------~~~~--p~~~~~~~------~~d~~g-~Lv~~~-~   85 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKR---------------VFPS--PGGFSSGA------LIDAGG-RLIACE-H   85 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceE---------------EEEC--CCCcccce------eecCCC-eEEEEc-c
Confidence            455665544 34446677888887766543               2221  12222221      223344 344443 2


Q ss_pred             CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeC----------CcEEEEEcCCCCCeeeeecccccc
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL----------SEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                       -+.+++.+++..+..+............+.+...|+|.+.++...          ..-.+|-+...+....    ....
T Consensus        86 -g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~----l~~~  160 (307)
T COG3386          86 -GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR----LLDD  160 (307)
T ss_pred             -ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE----eecC
Confidence             367777766665333322222222236678899999988774322          1113444442144433    2344


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCC--C----C-ceEeeccCCCCeEEEEEccCCcEEEeeecCCC-eEEE
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD--G----R-PLFFLKGHNGGITHLEFSSNGILLFSGARKDC-EIIC  228 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~----~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~-~i~i  228 (334)
                      +-..-+.++||||++.++++=+..+.|+-|++..  +    + ....+....+..-.++...+|.+.+++. .+| .|.+
T Consensus       161 ~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-~~g~~v~~  239 (307)
T COG3386         161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-WGGGRVVR  239 (307)
T ss_pred             cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc-cCCceEEE
Confidence            4556678999999983444445568888888752  1    1 1122233456666788888888775554 343 8999


Q ss_pred             EEccCCCccceeecccccCCceEEEEe-cCCCceEEee
Q psy2305         229 WDLRNPGCILHTFPRQVSTNQRVYFDL-TSCSNYLLSG  265 (334)
Q Consensus       229 wd~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~  265 (334)
                      |+..  ++.+..+.-..  ..+.+++| .|+.+.|++.
T Consensus       240 ~~pd--G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         240 FNPD--GKLLGEIKLPV--KRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             ECCC--CcEEEEEECCC--CCCccceEeCCCcCEEEEE
Confidence            9887  66666665442  33444444 3444444433

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=98.09  E-value=0.0019  Score=54.40  Aligned_cols=239  Identities=12%  Similarity=0.035  Sum_probs=104.9

Q ss_pred             CCcEEEEee-CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee--C---
Q psy2305          12 DGTCLLTNS-NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS--M---   85 (334)
Q Consensus        12 ~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~--~---   85 (334)
                      +.++|+..+ .++.|+|.|+.+.-..          |.+.++++..+-..-..+.. |..+---|+|++++++-  .   
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~----------P~l~KvIe~~ev~~k~g~s~-PHT~Hclp~G~imIS~lGd~~G~  154 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRK----------PRLHKVIEPEEVFEKTGLSR-PHTVHCLPDGRIMISALGDADGN  154 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-----------EEEEEE-HHHHHHHH-EEE-EEEEEE-SS--EEEEEEEETTS-
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCC----------CceEeeeCHHHHHhhcCCCC-CceeeecCCccEEEEeccCCCCC
Confidence            355777766 7789999999854332          11223332210000000000 10111156888888752  2   


Q ss_pred             -CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee---------------------CCcEEEEEcCCC
Q psy2305          86 -YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---------------------LSEVKIFSTDRP  143 (334)
Q Consensus        86 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------------------d~~i~i~d~~~~  143 (334)
                       -|-+.+.|-++.+.....+......  ..-+.+.|.|..+.++++.                     ..++.+||+.+ 
T Consensus       155 g~Ggf~llD~~tf~v~g~We~~~~~~--~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-  231 (461)
T PF05694_consen  155 GPGGFVLLDGETFEVKGRWEKDRGPQ--PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-  231 (461)
T ss_dssp             S--EEEEE-TTT--EEEE--SB-TT--------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-
T ss_pred             CCCcEEEEcCccccccceeccCCCCC--CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-
Confidence             2467888887777766665422211  1456788888888887632                     34799999996 


Q ss_pred             CCeeeeecccccccccceEEEEEc--CCCCcEEEEeecCCeEEEEEC-CCCC----ceEeecc-----------------
Q psy2305         144 GRECVSRNLKPWFRKNIVSAIAIN--PVHPDICALGTYSKIIGLFSD-SDGR----PLFFLKG-----------------  199 (334)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~i~d~-~~~~----~~~~~~~-----------------  199 (334)
                      .+.++.+.  +.........+.|.  |+...-++.+.-..+|..|-- +.++    .+..+..                 
T Consensus       232 r~~~Q~id--Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~  309 (461)
T PF05694_consen  232 RKLLQTID--LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA  309 (461)
T ss_dssp             TEEEEEEE--S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred             CcEeeEEe--cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence            55555422  22222345566664  444423443444555555543 3331    1222211                 


Q ss_pred             CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccc----------------ccCCceEEEEecCCCceEE
Q psy2305         200 HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ----------------VSTNQRVYFDLTSCSNYLL  263 (334)
Q Consensus       200 ~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~s~~~~~l~  263 (334)
                      -..-|+.|..|.|.++|++++...|.++.||+..+.++...-+-.                .......-+..|-||+.|.
T Consensus       310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY  389 (461)
T PF05694_consen  310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY  389 (461)
T ss_dssp             E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred             CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence            134578999999999999998889999999998765543322110                0011122366788998877


Q ss_pred             eee
Q psy2305         264 SGN  266 (334)
Q Consensus       264 ~~~  266 (334)
                      ..+
T Consensus       390 vTn  392 (461)
T PF05694_consen  390 VTN  392 (461)
T ss_dssp             EE-
T ss_pred             EEe
Confidence            553

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.08  E-value=0.0029  Score=52.81  Aligned_cols=198  Identities=12%  Similarity=0.027  Sum_probs=99.3

Q ss_pred             ccceecCCCcEEEEee-CCC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-eCCcEEEEEcCCCC
Q psy2305          69 KTSSIDGFTSYFLCSS-MYA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPG  144 (334)
Q Consensus        69 ~~~~~s~~~~~l~~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~  144 (334)
                      ..-+|.++|+.|+.++ .||  .+.+.|+++++..+.-.....     ......++|+++.++-. ....+.-.|+++. 
T Consensus        39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-----~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~-  112 (386)
T PF14583_consen   39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-----NTFGGFLSPDDRALYYVKNGRSLRRVDLDTL-  112 (386)
T ss_dssp             TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B------TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred             cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC-----CccceEEecCCCeEEEEECCCeEEEEECCcC-
Confidence            3445688997665554 455  567779988877665443221     22346677888887644 4678888898873 


Q ss_pred             CeeeeecccccccccceEEEEE--cCCCCcEEEEee---cC-------------------CeEEEEECCCCCceEeeccC
Q psy2305         145 RECVSRNLKPWFRKNIVSAIAI--NPVHPDICALGT---YS-------------------KIIGLFSDSDGRPLFFLKGH  200 (334)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~---~d-------------------g~i~i~d~~~~~~~~~~~~~  200 (334)
                      +...    .+......+-...|  +.++. .++-.-   .+                   ..|.-.|+.+++....+. .
T Consensus       113 e~~~----vy~~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~  186 (386)
T PF14583_consen  113 EERV----VYEVPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-D  186 (386)
T ss_dssp             -EEE----EEE--TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-E
T ss_pred             cEEE----EEECCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-c
Confidence            2211    23333444433445  44555 443211   11                   156667888777655544 4


Q ss_pred             CCCeEEEEEccCCcEEEeeecCCC-----eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee-----cCCc
Q psy2305         201 NGGITHLEFSSNGILLFSGARKDC-----EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-----TNGD  270 (334)
Q Consensus       201 ~~~i~~~~~~~~~~~l~~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-----~dg~  270 (334)
                      ...+..+.|+|....+++-+ .+|     .-+||-++..+...+.+..+.....+..=-|.|||..|..-+     .+..
T Consensus       187 ~~wlgH~~fsP~dp~li~fC-HEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~  265 (386)
T PF14583_consen  187 TDWLGHVQFSPTDPTLIMFC-HEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW  265 (386)
T ss_dssp             SS-EEEEEEETTEEEEEEEE-E-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred             CccccCcccCCCCCCEEEEe-ccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence            56788899999655444443 233     247888887676666666554444444556899998776432     2446


Q ss_pred             EEEEeCCCC
Q psy2305         271 LSIWNVNTS  279 (334)
Q Consensus       271 i~iwd~~~~  279 (334)
                      |.-+|+.++
T Consensus       266 i~~~d~~t~  274 (386)
T PF14583_consen  266 IAGYDPDTG  274 (386)
T ss_dssp             EEEE-TTT-
T ss_pred             EEeeCCCCC
Confidence            777788876

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.03  E-value=0.00086  Score=57.17  Aligned_cols=212  Identities=9%  Similarity=0.050  Sum_probs=109.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC---c
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT---S   78 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~---~   78 (334)
                      ++|++++.|.=| ++|.|..+|.+.|.|++....+.......       ..........+.++.|..  +.+..|+   -
T Consensus        87 g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~-------~~~~~~~~~~vt~ieF~v--m~~~~D~ySSi  156 (395)
T PF08596_consen   87 GPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE-------SFLSKSSSSYVTSIEFSV--MTLGGDGYSSI  156 (395)
T ss_dssp             -SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG---------T-SS----EEEEEEEE--EE-TTSSSEEE
T ss_pred             CcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc-------cccccccccCeeEEEEEE--EecCCCcccce
Confidence            578999998555 89999999999999998877652111000       011122345677888865  3334444   4


Q ss_pred             EEEEeeCCCcEEEEeCCC---CeeeEEEcCccccccccceeEEE-EcCC---------------------CCEEEEeeCC
Q psy2305          79 YFLCSSMYAPIHLWDSVG---GEIKATYRPYNQVDEVTHAYSLA-FSLD---------------------GNKIYAGFLS  133 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~-~~~~---------------------~~~l~~~~d~  133 (334)
                      .+++|...|.+.+|.+.-   +.....+.... ....++|..+. |+.+                     ..+++++++.
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~  235 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES  235 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred             EEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence            688889999999997641   22222221111 00111333333 2211                     1256667788


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEc-----CCCCcEEEEeecCCeEEEEECCCCCceEeeccCC----CCe
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN-----PVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN----GGI  204 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~i  204 (334)
                      .++++...+ .+....   .+ ........+.+-     ..+. .|++-..+|.|++|.+..-+.+..+.-..    ..+
T Consensus       236 ~irv~~~~~-~k~~~K---~~-~~~~~~~~~~vv~~~~~~~~~-~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~  309 (395)
T PF08596_consen  236 DIRVFKPPK-SKGAHK---SF-DDPFLCSSASVVPTISRNGGY-CLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL  309 (395)
T ss_dssp             EEEEE-TT----EEEE---E--SS-EEEEEEEEEEEE-EEEEE-EEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred             ceEEEeCCC-Ccccce---ee-ccccccceEEEEeecccCCce-EEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence            999999886 444332   22 222223334442     2344 77788899999999999888877765432    123


Q ss_pred             EEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         205 THLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       205 ~~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      ....++++|..++..+  ...+.++.+-
T Consensus       310 ~~ssis~~Gdi~~~~g--psE~~l~sv~  335 (395)
T PF08596_consen  310 SSSSISRNGDIFYWTG--PSEIQLFSVW  335 (395)
T ss_dssp             TT-EE-TTS-EEEE-S--SSEEEEEEEE
T ss_pred             cccEECCCCCEEEEeC--cccEEEEEEE
Confidence            3466788888776665  4444444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.99  E-value=0.0088  Score=52.09  Aligned_cols=193  Identities=15%  Similarity=0.111  Sum_probs=102.5

Q ss_pred             ceecCCCcEEEEe-eCCC----cEEEEeCCCCeeeEEE-cCccccccccceeEEEEcCCCCEEEEee-CC----------
Q psy2305          71 SSIDGFTSYFLCS-SMYA----PIHLWDSVGGEIKATY-RPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS----------  133 (334)
Q Consensus        71 ~~~s~~~~~l~~~-~~d~----~i~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~----------  133 (334)
                      ..+||+++++|.+ +..|    .++++|+++|+.+... ..  .     ....+.|.++++.|+... +.          
T Consensus       129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~-----~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~  201 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--P-----KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP  201 (414)
T ss_dssp             EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--E-----ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred             eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--c-----ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence            3458999998865 3333    5999999999776532 21  1     223499999998877442 21          


Q ss_pred             -cEEEEEcCCCCCeeeeeccccccccc--ceEEEEEcCCCCcEEEEe-ec--C-CeEEEEECCCC----CceEeeccCCC
Q psy2305         134 -EVKIFSTDRPGRECVSRNLKPWFRKN--IVSAIAINPVHPDICALG-TY--S-KIIGLFSDSDG----RPLFFLKGHNG  202 (334)
Q Consensus       134 -~i~i~d~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~-~~--d-g~i~i~d~~~~----~~~~~~~~~~~  202 (334)
                       .|..|.+.++...-..   .+.....  ....+..+++++ +++.. ..  + ..+++.|+..+    .....+.....
T Consensus       202 ~~v~~~~~gt~~~~d~l---vfe~~~~~~~~~~~~~s~d~~-~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~  277 (414)
T PF02897_consen  202 RQVYRHKLGTPQSEDEL---VFEEPDEPFWFVSVSRSKDGR-YLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED  277 (414)
T ss_dssp             EEEEEEETTS-GGG-EE---EEC-TTCTTSEEEEEE-TTSS-EEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred             cEEEEEECCCChHhCee---EEeecCCCcEEEEEEecCccc-EEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence             2777887763332111   2222222  256889999999 65543 22  2 45888898764    23334433333


Q ss_pred             CeE-EEEEccCCcEEEeeec--CCCeEEEEEccCCCc--cceeecccccCCceEEEEecCCCceEE-eeecCC--cEEEE
Q psy2305         203 GIT-HLEFSSNGILLFSGAR--KDCEIICWDLRNPGC--ILHTFPRQVSTNQRVYFDLTSCSNYLL-SGNTNG--DLSIW  274 (334)
Q Consensus       203 ~i~-~~~~~~~~~~l~~~~~--~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg--~i~iw  274 (334)
                      .+. .+... .+.+++....  ..+.|...++.....  ....+..+.....+..+.  ..+.+|+ ....++  .|+++
T Consensus       278 ~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~  354 (414)
T PF02897_consen  278 GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRVY  354 (414)
T ss_dssp             S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEEE
Confidence            343 34333 4444443321  245677777776332  111333332223344443  3344444 444444  68889


Q ss_pred             eCC
Q psy2305         275 NVN  277 (334)
Q Consensus       275 d~~  277 (334)
                      ++.
T Consensus       355 ~~~  357 (414)
T PF02897_consen  355 DLD  357 (414)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4640|consensus

Probab=97.94  E-value=6.9e-05  Score=64.73  Aligned_cols=79  Identities=23%  Similarity=0.192  Sum_probs=67.5

Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeE-EEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGIT-HLEFSSNGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      ...+..+.|+|.-. ++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|++|- .||+|++.|..+ +.
T Consensus        20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~-kdG~I~L~Dve~-~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGF-KDGTIRLHDVEK-GG   95 (665)
T ss_pred             ccceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEe-cCCeEEEEEccC-CC
Confidence            34577899999999 99999999999999987 777788876776777 999999999999999 899999999998 44


Q ss_pred             ccee
Q psy2305         237 ILHT  240 (334)
Q Consensus       237 ~~~~  240 (334)
                      .+..
T Consensus        96 ~l~~   99 (665)
T KOG4640|consen   96 RLVS   99 (665)
T ss_pred             ceec
Confidence            3433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.94  E-value=0.00041  Score=63.42  Aligned_cols=135  Identities=16%  Similarity=0.124  Sum_probs=90.5

Q ss_pred             EEEEe-ecCCeEEEEECCCCCceEeeccCCCC-eEEEEEccC-------CcEEEeeecCCCeEEEEEccCCCcccee--e
Q psy2305         173 ICALG-TYSKIIGLFSDSDGRPLFFLKGHNGG-ITHLEFSSN-------GILLFSGARKDCEIICWDLRNPGCILHT--F  241 (334)
Q Consensus       173 ~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~-------~~~l~~~~~~d~~i~iwd~~~~~~~~~~--~  241 (334)
                      +|+.. .....|+-.|++.|+.+..+..+... |..+  .|+       ....+.|- .+..+..||.|..+..+..  .
T Consensus       495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGl-s~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  495 MILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGL-SDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             eEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEE-CCCceEEeccCCCCCceeeccc
Confidence            44433 45678999999999999999877643 5444  343       22344555 6899999999975432211  1


Q ss_pred             cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceee
Q psy2305         242 PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVA  321 (334)
Q Consensus       242 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~  321 (334)
                      ..........+++-+.+ -+||+|+.+|.||+||--..            +....+++-..+|.+|..  +.||    ++
T Consensus       572 k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~------------~AKT~lp~lG~pI~~iDv--t~DG----kw  632 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGK------------RAKTALPGLGDPIIGIDV--TADG----KW  632 (794)
T ss_pred             cccccCCCceEEEecCC-ceEEEEeCCCcEEeecccch------------hhhhcCCCCCCCeeEEEe--cCCC----cE
Confidence            11112344556665544 47889999999999995432            444556677789999999  9999    88


Q ss_pred             EEeeecce
Q psy2305         322 DATCSGQI  329 (334)
Q Consensus       322 l~t~~~d~  329 (334)
                      |++.+..-
T Consensus       633 ilaTc~ty  640 (794)
T PF08553_consen  633 ILATCKTY  640 (794)
T ss_pred             EEEeecce
Confidence            76665543

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.92  E-value=0.0024  Score=57.51  Aligned_cols=189  Identities=12%  Similarity=0.104  Sum_probs=99.5

Q ss_pred             ccceecCCCcEEEEee------CCC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCC--cEEEE
Q psy2305          69 KTSSIDGFTSYFLCSS------MYA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLS--EVKIF  138 (334)
Q Consensus        69 ~~~~~s~~~~~l~~~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~--~i~i~  138 (334)
                      ...+++|+|+.++...      .|.  .|.+++. .+........  .     ..+.-.|+|||..|.+..++  .+++.
T Consensus       353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~-----~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--H-----SLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             ccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--C-----CCCCceECCCCCceEEEecCcceEEEe
Confidence            3456799999887765      243  4444454 2333222222  1     35678999998877766432  22232


Q ss_pred             EcCCCCCeeeeecc---cc-cccccceEEEEEcCCCCcEEEEeecCCeEEE---EECCCCCc-e---Eeec-cCCCCeEE
Q psy2305         139 STDRPGRECVSRNL---KP-WFRKNIVSAIAINPVHPDICALGTYSKIIGL---FSDSDGRP-L---FFLK-GHNGGITH  206 (334)
Q Consensus       139 d~~~~~~~~~~~~~---~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~-~---~~~~-~~~~~i~~  206 (334)
                      +-.. ...+....+   .. ......|..+.|+|||. .++... ++.|++   -....+.. +   ..+. .-...+.+
T Consensus       425 ~~~~-~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        425 RDPA-TGQLARTPVDASAVASRVPGPISELQLSRDGV-RAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             ccCC-CceEEEEeccCchhhhccCCCcCeEEECCCCC-EEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence            2221 111111000   00 02345799999999999 666544 577777   44334431 1   1122 22233678


Q ss_pred             EEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEE
Q psy2305         207 LEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLS  272 (334)
Q Consensus       207 ~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  272 (334)
                      +.|.+++.++ ++. .++.-.+|.+.-.+.....+........+.+++-+++  .++....+|.+.
T Consensus       502 l~W~~~~~L~-V~~-~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        502 LDWRTGDSLV-VGR-SDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ceEecCCEEE-EEe-cCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            9999999855 555 4555556666543443332233222344556665552  344555566333

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.92  E-value=0.0063  Score=48.07  Aligned_cols=190  Identities=11%  Similarity=0.127  Sum_probs=106.1

Q ss_pred             eecCCCcEEEEeeCC-----CcEEEEeCCCC-eeeEEEcCccccccccceeEEEEcCCCCEEEEeeCC------------
Q psy2305          72 SIDGFTSYFLCSSMY-----APIHLWDSVGG-EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLS------------  133 (334)
Q Consensus        72 ~~s~~~~~l~~~~~d-----~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~------------  133 (334)
                      .|||||.+|...-.|     |.|-|||...+ +.+..+..+.-     ....+.|.+||+.|+.+..|            
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~Gi-----GpHev~lm~DGrtlvvanGGIethpdfgR~~l  194 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGI-----GPHEVTLMADGRTLVVANGGIETHPDFGRTEL  194 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCc-----CcceeEEecCCcEEEEeCCceecccccCcccc
Confidence            368999998876443     67899998643 23444555444     66789999999999865422            


Q ss_pred             -------cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCe-----EEEEECCCCCceEeec---
Q psy2305         134 -------EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKI-----IGLFSDSDGRPLFFLK---  198 (334)
Q Consensus       134 -------~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~---  198 (334)
                             ++.+.|..+ +..+.+..+....+.-.+..++..++|. ..+-+-..|.     -.+=-...++++.-+.   
T Consensus       195 NldsMePSlvlld~at-G~liekh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pe  272 (366)
T COG3490         195 NLDSMEPSLVLLDAAT-GNLIEKHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPE  272 (366)
T ss_pred             chhhcCccEEEEeccc-cchhhhccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCH
Confidence                   133334332 4443332221224556788888889887 4443322221     0111112233333332   


Q ss_pred             ----cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEE
Q psy2305         199 ----GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW  274 (334)
Q Consensus       199 ----~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw  274 (334)
                          .....|-+++.+.+..+++..+...+...+||..+ +..+..-.-.  .  ...+  -+...-+++.+.+|.+.++
T Consensus       273 e~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t-G~vv~~a~l~--d--aaGv--a~~~~gf~vssg~G~~~~~  345 (366)
T COG3490         273 EQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT-GAVVSEAALP--D--AAGV--AAAKGGFAVSSGQGRIIFY  345 (366)
T ss_pred             HHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC-CcEEeccccc--c--cccc--eeccCceEEecCCceEEec
Confidence                12235667888766556655553566788999998 6654332211  1  1112  2334445556668888887


Q ss_pred             e
Q psy2305         275 N  275 (334)
Q Consensus       275 d  275 (334)
                      .
T Consensus       346 s  346 (366)
T COG3490         346 S  346 (366)
T ss_pred             c
Confidence            4

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.91  E-value=0.0033  Score=56.67  Aligned_cols=149  Identities=13%  Similarity=0.064  Sum_probs=85.0

Q ss_pred             ceeEEEEcCCCCEEEEee-------CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC------
Q psy2305         114 HAYSLAFSLDGNKIYAGF-------LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS------  180 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------  180 (334)
                      .+.+.+++|+|+.++...       |..-.+|-....+.. ..   ...+.  ..+.-.|+|+|+ .+++....      
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~---lt~g~--~~t~PsWspDG~-~lw~v~dg~~~~~v  423 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQ---VLEGH--SLTRPSWSLDAD-AVWVVVDGNTVVRV  423 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-ee---eecCC--CCCCceECCCCC-ceEEEecCcceEEE
Confidence            578999999999887432       333344443322322 21   12222  377889999988 67666432      


Q ss_pred             ------CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC--CCccceeec-----ccccC
Q psy2305         181 ------KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN--PGCILHTFP-----RQVST  247 (334)
Q Consensus       181 ------g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~--~~~~~~~~~-----~~~~~  247 (334)
                            +.+.+.+++.++...   ...+.|..+.|||||+.++...  ++.|++--+..  .+.  ..+.     .....
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~  496 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ--YALTNPREVGPGLG  496 (591)
T ss_pred             eccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc--eeecccEEeecccC
Confidence                  233333444333322   2345799999999999999887  57777732221  132  2221     11112


Q ss_pred             CceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305         248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVN  277 (334)
Q Consensus       248 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  277 (334)
                      ..+..+.|.+++.++ ++..++...+|.+.
T Consensus       497 ~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        497 DTAVSLDWRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             CccccceEecCCEEE-EEecCCCCceEEEe
Confidence            234678899999865 44444444455443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.90  E-value=0.0086  Score=48.90  Aligned_cols=225  Identities=17%  Similarity=0.113  Sum_probs=119.3

Q ss_pred             CCCcEEEEeeCCCeEEEEECCC-CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcE
Q psy2305          11 PDGTCLLTNSNDNHLRTFDLPS-ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPI   89 (334)
Q Consensus        11 p~~~~l~~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i   89 (334)
                      ..++.|+.|+.+| +.+++... ....              ...   +...|..+..       -++-+.|++-+ |+.+
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~--------------~i~---~~~~I~ql~v-------l~~~~~llvLs-d~~l   58 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPT--------------RIL---KLSSITQLSV-------LPELNLLLVLS-DGQL   58 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccce--------------eEe---ecceEEEEEE-------ecccCEEEEEc-CCcc
Confidence            4678899999998 89999832 2221              111   2223666554       44555555443 5999


Q ss_pred             EEEeCCCCeeeEEEc---C------ccccccccceeEEE---EcCCCCEEEEeeCCcEEEEEcCCCCCee-eeecccccc
Q psy2305          90 HLWDSVGGEIKATYR---P------YNQVDEVTHAYSLA---FSLDGNKIYAGFLSEVKIFSTDRPGREC-VSRNLKPWF  156 (334)
Q Consensus        90 ~iwd~~~~~~~~~~~---~------~~~~~~~~~v~~~~---~~~~~~~l~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~  156 (334)
                      .++++..-.......   .      .........+...+   -......|+++....|.+|......... ...  .-..
T Consensus        59 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~--ke~~  136 (275)
T PF00780_consen   59 YVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL--KEIS  136 (275)
T ss_pred             EEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee--EEEE
Confidence            999987544332110   0      00001111344444   2223455666667899999887531211 100  1122


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC------------CCCeEEEEEccCCcEEEeeecCCC
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH------------NGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                      -...+..++|.++   .++.|. .....+.|+.++.....+...            ..++..+.. +++.+|++.   +.
T Consensus       137 lp~~~~~i~~~~~---~i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~---~~  208 (275)
T PF00780_consen  137 LPDPPSSIAFLGN---KICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY---DN  208 (275)
T ss_pred             cCCCcEEEEEeCC---EEEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe---cc
Confidence            3477889999843   677676 455888999877654433211            122333333 345555533   33


Q ss_pred             eEEEEEccCCCccce--eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         225 EIICWDLRNPGCILH--TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       225 ~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .-.+.|..  +.+.+  .+.-   .....++++  ...||+.... +.|.||++.++
T Consensus       209 ~g~fv~~~--G~~~r~~~i~W---~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~  257 (275)
T PF00780_consen  209 IGVFVNKN--GEPSRKSTIQW---SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETG  257 (275)
T ss_pred             eEEEEcCC--CCcCcccEEEc---CCchhEEEE--ECCEEEEECC-CEEEEEECcCC
Confidence            44444554  43333  2221   122334444  3457777665 55999999998

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.88  E-value=0.0096  Score=48.64  Aligned_cols=145  Identities=13%  Similarity=0.041  Sum_probs=90.0

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecc-
Q psy2305          75 GFTSYFLCSSMYAPIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL-  152 (334)
Q Consensus        75 ~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~-  152 (334)
                      ..++.|+.|..+| +.+++... .......+.  .     .|..+...|+-+.|++-+|+.+.++++..-.......+. 
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~-----~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--S-----SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeec--c-----eEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccc
Confidence            3677899998888 89999832 222322221  1     589999999988888878899999998752222110000 


Q ss_pred             --------cccccccceEEEE--EcCCCCcEEEEeecCCeEEEEECCCC-----CceEeeccCCCCeEEEEEccCCcEEE
Q psy2305         153 --------KPWFRKNIVSAIA--INPVHPDICALGTYSKIIGLFSDSDG-----RPLFFLKGHNGGITHLEFSSNGILLF  217 (334)
Q Consensus       153 --------~~~~~~~~v~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~  217 (334)
                              ........+..++  -.+.+. ..+......+|.+|.....     +..+.+. -...+..++|.  ++.|+
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~  152 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKIC  152 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEE
Confidence                    0111223344444  223343 3344445668998887553     3445554 34678899998  55777


Q ss_pred             eeecCCCeEEEEEccC
Q psy2305         218 SGARKDCEIICWDLRN  233 (334)
Q Consensus       218 ~~~~~d~~i~iwd~~~  233 (334)
                      .+.  .+...+.|+.+
T Consensus       153 v~~--~~~f~~idl~~  166 (275)
T PF00780_consen  153 VGT--SKGFYLIDLNT  166 (275)
T ss_pred             EEe--CCceEEEecCC
Confidence            776  45588889985

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4640|consensus

Probab=97.88  E-value=0.00012  Score=63.38  Aligned_cols=93  Identities=14%  Similarity=0.100  Sum_probs=71.6

Q ss_pred             eeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCcccccccccee-EEEEcCCCCEEEEee-CCcEE
Q psy2305          59 GIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAY-SLAFSLDGNKIYAGF-LSEVK  136 (334)
Q Consensus        59 ~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~-d~~i~  136 (334)
                      ..+.-+.|       +|.-.++|.+..+|.|.+..+. .+.+.++..++.     .++ +++|.|||+.|++|. ||+|+
T Consensus        21 ~~i~~~ew-------nP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~-----~v~~sL~W~~DGkllaVg~kdG~I~   87 (665)
T KOG4640|consen   21 INIKRIEW-------NPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGE-----NVTASLCWRPDGKLLAVGFKDGTIR   87 (665)
T ss_pred             cceEEEEE-------cCccchhheeccCCcEEEEEec-cceeEeccCCCC-----ccceeeeecCCCCEEEEEecCCeEE
Confidence            44666677       5577899999999999999886 777777775444     455 999999999999997 99999


Q ss_pred             EEEcCCCCCeeeeecccccccccceEEEEEcC
Q psy2305         137 IFSTDRPGRECVSRNLKPWFRKNIVSAIAINP  168 (334)
Q Consensus       137 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  168 (334)
                      +.|+.+ +..+..   ........|.++.|.+
T Consensus        88 L~Dve~-~~~l~~---~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   88 LHDVEK-GGRLVS---FLFSVETDISKGIWDR  115 (665)
T ss_pred             EEEccC-CCceec---cccccccchheeeccc
Confidence            999998 444443   2344456788888874

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.82  E-value=0.01  Score=47.18  Aligned_cols=171  Identities=11%  Similarity=0.023  Sum_probs=104.9

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      -|.++.|+|+.+.|++......-.|+=...++.+.+.+-            .+.+  .       |..+.+..++++.++
T Consensus        87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL------------~g~~--D-------pE~Ieyig~n~fvi~  145 (316)
T COG3204          87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL------------TGFS--D-------PETIEYIGGNQFVIV  145 (316)
T ss_pred             cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc------------cccC--C-------hhHeEEecCCEEEEE
Confidence            378999999999888887777666766666666521111            1111  1       122334557777777


Q ss_pred             eeCCCcEEEEeCCCCeeeEEE-----cCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATY-----RPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      --+++.+.++.+..+.....+     +.............++|.|..+.|+.+- .+-+.||.+......+.. . ....
T Consensus       146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~-~-~~~~  223 (316)
T COG3204         146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV-H-ASLD  223 (316)
T ss_pred             ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc-c-cccC
Confidence            778888888876654322211     1111111122678999999998888886 667777776642211111 0 0111


Q ss_pred             -------cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee
Q psy2305         157 -------RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL  197 (334)
Q Consensus       157 -------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  197 (334)
                             .-..+.++.|++...++++.+.+++.+.-.|. .+..+..+
T Consensus       224 ~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~l  270 (316)
T COG3204         224 PTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELL  270 (316)
T ss_pred             cccccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeE
Confidence                   12457788999877668888888999998886 45544444

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.80  E-value=0.018  Score=49.30  Aligned_cols=88  Identities=13%  Similarity=0.122  Sum_probs=52.8

Q ss_pred             EEEEcCCCcEEEEeeCCCeEEE---EECCCCC-ceeeeeCCCCCCCCcceeeeeeeceeEEEEEEeccccee----cCCC
Q psy2305           6 DVDEAPDGTCLLTNSNDNHLRT---FDLPSEL-HCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSI----DGFT   77 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~~d~~v~i---w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----s~~~   77 (334)
                      .++.+|++++||.+..+..+.+   |+..... ....+.      ......+....++.|+++.|-|....-    .+|.
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~------~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw   79 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYS------ISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDW   79 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEE------EEeeeeccCCCCCEEEEEEEEEeecccccCCCCCc
Confidence            5688999999999987766655   5332111 100000      001112222223688999887632111    2667


Q ss_pred             cEEEEeeCCCcEEEEeCCCCeee
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGEIK  100 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~~~  100 (334)
                      ..+++|..+|.|++|.. +|.++
T Consensus        80 ~~I~VG~ssG~vrfyte-~G~LL  101 (415)
T PF14655_consen   80 TCIAVGTSSGYVRFYTE-NGVLL  101 (415)
T ss_pred             EEEEEEecccEEEEEec-cchHH
Confidence            88999999999999985 56544

>smart00320 WD40 WD40 repeats

Probab=97.79  E-value=7e-05  Score=39.93  Aligned_cols=38  Identities=42%  Similarity=0.643  Sum_probs=33.3

Q ss_pred             CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         192 RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       192 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                      ++...+..|...|.++.|.+++..+++++ .|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASAS-DDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence            45566777888999999999999999999 899999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.77  E-value=0.026  Score=50.54  Aligned_cols=159  Identities=13%  Similarity=0.045  Sum_probs=85.5

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee------CCC
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS------MYA   87 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~------~d~   87 (334)
                      ..++.++.|+.|.-.|..+++..-.....              ....-..+.-.|.    -.++. ++++.      .+|
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~--------------~~~~~~~~tssP~----v~~g~-Vivg~~~~~~~~~G  181 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNG--------------DYKAGYTITAAPL----VVKGK-VITGISGGEFGVRG  181 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccc--------------cccccccccCCcE----EECCE-EEEeecccccCCCc
Confidence            45777788999999999999876311110              0000000111110    01444 44432      267


Q ss_pred             cEEEEeCCCCeeeEEEcCccccc------------c--------------cccee-EEEEcCCCCEEEEee------CC-
Q psy2305          88 PIHLWDSVGGEIKATYRPYNQVD------------E--------------VTHAY-SLAFSLDGNKIYAGF------LS-  133 (334)
Q Consensus        88 ~i~iwd~~~~~~~~~~~~~~~~~------------~--------------~~~v~-~~~~~~~~~~l~~~~------d~-  133 (334)
                      .|.-+|.++|+.+..+.......            +              .+.++ .+++.|+..+++.+.      ++ 
T Consensus       182 ~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~  261 (527)
T TIGR03075       182 YVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSH  261 (527)
T ss_pred             EEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCC
Confidence            89999999999887655432110            0              00121 346666666666432      12 


Q ss_pred             ----------cEEEEEcCCCCCeeeeecccccccc-------cceEEEEEcCCCC--cEEEEeecCCeEEEEECCCCCce
Q psy2305         134 ----------EVKIFSTDRPGRECVSRNLKPWFRK-------NIVSAIAINPVHP--DICALGTYSKIIGLFSDSDGRPL  194 (334)
Q Consensus       134 ----------~i~i~d~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~  194 (334)
                                +|.-.|+++ ++..-..  ....|.       ....-+.+..+|+  ..++.+..+|.++++|.++++.+
T Consensus       262 ~r~gdnl~~~s~vAld~~T-G~~~W~~--Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       262 LRPGDNLYTSSIVARDPDT-GKIKWHY--QTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCCCCccceeEEEEcccc-CCEEEee--eCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence                      566677776 5554432  112221       1112223334553  37788999999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2395|consensus

Probab=97.73  E-value=0.00071  Score=57.65  Aligned_cols=139  Identities=15%  Similarity=0.100  Sum_probs=93.6

Q ss_pred             CCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCc-------EEEeeecCCCeEEEEEccCCCc-ccee
Q psy2305         169 VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGI-------LLFSGARKDCEIICWDLRNPGC-ILHT  240 (334)
Q Consensus       169 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~~d~~i~iwd~~~~~~-~~~~  240 (334)
                      +.+-++.++.....++-.|++.|+.+....-+.. |.-+.+.|+.+       .-+.|- .+..|.-||.+-.+. .+..
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGL-s~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGL-SDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEee-cCCceEEecccccCcceeee
Confidence            3442445566677899999999999999886665 77777777653       123444 589999999996443 1212


Q ss_pred             ecccc--cCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305         241 FPRQV--STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL  318 (334)
Q Consensus       241 ~~~~~--~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~  318 (334)
                      ...+.  ......|++-. ..-++++|+.+|.|++||- .+.           +....+++-..+|..+..  +.+|   
T Consensus       422 ~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~-----------~AKTAlPgLG~~I~hVdv--tadG---  483 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGR-----------RAKTALPGLGDAIKHVDV--TADG---  483 (644)
T ss_pred             eeccccccccccceeeec-CCceEEEeecCCcEEeehh-hhh-----------hhhhcccccCCceeeEEe--eccC---
Confidence            22221  12233444433 3458899999999999998 432           445567778889999999  9999   


Q ss_pred             eeeEEeeecc
Q psy2305         319 LVADATCSGQ  328 (334)
Q Consensus       319 ~~~l~t~~~d  328 (334)
                       ++|+..+..
T Consensus       484 -Kwil~Tc~t  492 (644)
T KOG2395|consen  484 -KWILATCKT  492 (644)
T ss_pred             -cEEEEeccc
Confidence             876665543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.72  E-value=0.015  Score=46.06  Aligned_cols=99  Identities=13%  Similarity=0.133  Sum_probs=66.6

Q ss_pred             ceeEEEEcCCCCE-EEEee--CCcEEEEEcCCCCCeeeeecc----cccccccceEEEEEcCCCCcEEEEeec-----CC
Q psy2305         114 HAYSLAFSLDGNK-IYAGF--LSEVKIFSTDRPGRECVSRNL----KPWFRKNIVSAIAINPVHPDICALGTY-----SK  181 (334)
Q Consensus       114 ~v~~~~~~~~~~~-l~~~~--d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg  181 (334)
                      ....++|+|.... ++.+.  .....++|.+. .+.......    .+.+|      =.|+|+|. +|+....     .|
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~-~~~pv~~~s~~~RHfyGH------Gvfs~dG~-~LYATEndfd~~rG  140 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNG-AQEPVTLVSQEGRHFYGH------GVFSPDGR-LLYATENDFDPNRG  140 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCC-CcCcEEEecccCceeecc------cccCCCCc-EEEeecCCCCCCCc
Confidence            4467889987654 34454  34567888886 333332211    12333      36999999 7665432     36


Q ss_pred             eEEEEECCCC-CceEeeccCCCCeEEEEEccCCcEEEeee
Q psy2305         182 IIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       182 ~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  220 (334)
                      .|-+||.+.+ +.+.++..|.-....+.|.+||+.|+.+.
T Consensus       141 ViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         141 VIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             eEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            7999999754 55677788887888999999999988765

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.68  E-value=0.024  Score=47.56  Aligned_cols=249  Identities=14%  Similarity=0.124  Sum_probs=116.8

Q ss_pred             CCceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           1 MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         1 ~d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      |+..++|+|.|||++|+ +...|.|++++ ..+.....+....        .+.......+..++++|.   |..++.+.
T Consensus         1 L~~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~--------~v~~~~~~gllgia~~p~---f~~n~~lY   67 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLP--------EVFADGERGLLGIAFHPD---FASNGYLY   67 (331)
T ss_dssp             ESSEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-T--------TTBTSTTBSEEEEEE-TT---CCCC-EEE
T ss_pred             CCCceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccc--------cccccccCCcccceeccc---cCCCCEEE
Confidence            35678999999997665 46699999999 3333211010000        011122345677777652   22244444


Q ss_pred             EEeeCC--------CcEEEEeCCCC-------eee-EEEcC---ccccccccceeEEEEcCCCCEEEEeeC-Cc------
Q psy2305          81 LCSSMY--------APIHLWDSVGG-------EIK-ATYRP---YNQVDEVTHAYSLAFSLDGNKIYAGFL-SE------  134 (334)
Q Consensus        81 ~~~~~d--------~~i~iwd~~~~-------~~~-~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~------  134 (334)
                      ++.+..        ..|.-|....+       +.+ ..+..   ..|     .-..|+|.|||.+.++.++ +.      
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H-----~g~~l~fgpDG~LYvs~G~~~~~~~~~~  142 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNH-----NGGGLAFGPDGKLYVSVGDGGNDDNAQD  142 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS------EEEEEE-TTSEEEEEEB-TTTGGGGCS
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCC-----CCccccCCCCCcEEEEeCCCCCcccccc
Confidence            444321        23444443332       111 11222   123     5578999999966664331 11      


Q ss_pred             -----EEEEEcCCCCCeeeeecc----------cccccccceEEEEEcCC-CCcEEEEe-ecCC--eEEEEEC-------
Q psy2305         135 -----VKIFSTDRPGRECVSRNL----------KPWFRKNIVSAIAINPV-HPDICALG-TYSK--IIGLFSD-------  188 (334)
Q Consensus       135 -----i~i~d~~~~~~~~~~~~~----------~~~~~~~~v~~~~~~~~-~~~~l~~~-~~dg--~i~i~d~-------  188 (334)
                           =+|+.++..+......+.          ...++. ....++|+|. |. ++++- +.++  .|.+..-       
T Consensus       143 ~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP  220 (331)
T PF07995_consen  143 PNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWP  220 (331)
T ss_dssp             TTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TT
T ss_pred             cccccceEEEecccCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCC
Confidence                 122333221221100000          112232 3458999999 65 44431 2222  2333211       


Q ss_pred             -CC------C-------------CceEeeccCCCCeEEEEEcc-------CCcEEEeeecCCCeEEEEEccCCCccceee
Q psy2305         189 -SD------G-------------RPLFFLKGHNGGITHLEFSS-------NGILLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       189 -~~------~-------------~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                       ..      +             .++..+. +...+..+.|.+       .|.+++..- ..+.|....+...+. +...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~-~~~~i~~~~~~~~~~-~~~~  297 (331)
T PF07995_consen  221 YCEGGPKYSGPPIGDAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADY-GGGRIWRLDLDEDGS-VTEE  297 (331)
T ss_dssp             TBSSSCSTTSS-ECTGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEET-TTTEEEEEEEETTEE-EEEE
T ss_pred             CCcCCCCCCCCccccccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecC-CCCEEEEEeeecCCC-ccce
Confidence             00      0             1222233 334566777753       345665555 577888888875333 2111


Q ss_pred             cc--cccCCceEEEEecCCCceEEeeecCCcEE
Q psy2305         242 PR--QVSTNQRVYFDLTSCSNYLLSGNTNGDLS  272 (334)
Q Consensus       242 ~~--~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  272 (334)
                      ..  ......+..+++.|||.++++-..+|.|.
T Consensus       298 ~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  298 EEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             EEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            11  11233678899999999998888888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.62  E-value=0.026  Score=46.21  Aligned_cols=146  Identities=16%  Similarity=0.135  Sum_probs=74.6

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      +++|+++++++.-....-||.-.......-.....     .|..|.|.|++.+.+.+..|.|+.=+..............
T Consensus       153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~-----riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~  227 (302)
T PF14870_consen  153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSR-----RIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIP  227 (302)
T ss_dssp             -TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS------EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-T
T ss_pred             CCCCcEEEEECcccEEEEecCCCccceEEccCccc-----eehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCC
Confidence            78999888887655556777432212222221112     8999999999988777778888887722211111110001


Q ss_pred             ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec---cCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         154 PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK---GHNGGITHLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                      .....-.+..++|.+++. ..++|+ .|.+. .....++.=+...   .-....+.+.|.++.+-++.|.  +|.|--|
T Consensus       228 ~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~--~G~ll~~  301 (302)
T PF14870_consen  228 IKTNGYGILDLAYRPPNE-IWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ--DGVLLRY  301 (302)
T ss_dssp             TSS--S-EEEEEESSSS--EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S--TTEEEEE
T ss_pred             cccCceeeEEEEecCCCC-EEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECC--CcEEEEe
Confidence            112333578999999987 666554 55443 3334554433332   2345688999987777777664  8877655

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.51  E-value=0.033  Score=44.74  Aligned_cols=207  Identities=9%  Similarity=0.029  Sum_probs=111.6

Q ss_pred             cceecCCCcEEEEeeCCCcEEEEeCC------CC-eeeEEEcCccccccccceeEEEEcCCCC-------------EEEE
Q psy2305          70 TSSIDGFTSYFLCSSMYAPIHLWDSV------GG-EIKATYRPYNQVDEVTHAYSLAFSLDGN-------------KIYA  129 (334)
Q Consensus        70 ~~~~s~~~~~l~~~~~d~~i~iwd~~------~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~l~~  129 (334)
                      .++++|.+.+-++....+...+||..      .. .++-.+............+.+.|+....             +|++
T Consensus        27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~  106 (336)
T TIGR03118        27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV  106 (336)
T ss_pred             eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence            35568888888887778899999986      11 2233333222222222567777775432             2444


Q ss_pred             eeCCcEEEEEcCCCCCee-eeeccccc-ccccc-eEEEEEcCC--CCcEEEEeecCCeEEEEECCCCCce--EeeccC--
Q psy2305         130 GFLSEVKIFSTDRPGREC-VSRNLKPW-FRKNI-VSAIAINPV--HPDICALGTYSKIIGLFSDSDGRPL--FFLKGH--  200 (334)
Q Consensus       130 ~~d~~i~i~d~~~~~~~~-~~~~~~~~-~~~~~-v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~--  200 (334)
                      +.||+|.-|........+ ... +.+. ..... ...+++...  +..+.++--..++|.+||-.-.+..  ..+...  
T Consensus       107 tEdGTisaW~p~v~~t~~~~~~-~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i  185 (336)
T TIGR03118       107 TEDGTLSGWAPALGTTRMTRAE-IVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL  185 (336)
T ss_pred             eCCceEEeecCcCCcccccccE-EEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence            458999999864311100 000 0111 11122 345555533  4424444456789999985322211  011100  


Q ss_pred             ---CC-----------CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecC------CCc
Q psy2305         201 ---NG-----------GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTS------CSN  260 (334)
Q Consensus       201 ---~~-----------~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~  260 (334)
                         -.           -|+...-.++++.=+.+. .-|.|-+||+.  +..++++.....-...+.++..|      .|.
T Consensus       186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~-G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGA-GLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCcceEEECCeEEEEEEecCCcccccccCC-CcceEEEEcCC--CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence               00           011112223332223333 45789999987  77788776443344455566555      456


Q ss_pred             eEEeeecCCcEEEEeCCCCC
Q psy2305         261 YLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       261 ~l~~~~~dg~i~iwd~~~~~  280 (334)
                      +|+---.||+|..||..+++
T Consensus       263 lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             eEEeecCCceeEEecCCCCc
Confidence            77766669999999999883

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.50  E-value=0.032  Score=44.25  Aligned_cols=183  Identities=13%  Similarity=0.004  Sum_probs=108.8

Q ss_pred             ceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC
Q psy2305         114 HAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD  190 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  190 (334)
                      ....+.|..+|.++-+.+   ...|+.+|+.+ ++.....++   ...----.++...+ + +....-.++...+||..+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-g~~~~~~~l---~~~~FgEGit~~~d-~-l~qLTWk~~~~f~yd~~t  119 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLET-GKVLQSVPL---PPRYFGEGITILGD-K-LYQLTWKEGTGFVYDPNT  119 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTT-SSEEEEEE----TTT--EEEEEEETT-E-EEEEESSSSEEEEEETTT
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCC-CcEEEEEEC---CccccceeEEEECC-E-EEEEEecCCeEEEEcccc
Confidence            456788877777666543   35899999997 665554322   11122234444433 3 555566889999999999


Q ss_pred             CCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCc---eEEEEecCCCceEEeeec
Q psy2305         191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQ---RVYFDLTSCSNYLLSGNT  267 (334)
Q Consensus       191 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~~l~~~~~  267 (334)
                      .+.+.++. ..+.=..++  .+++.|+... ....|+++|..+ -+....+.-.....+   +..+.|- +|...|=.-.
T Consensus       120 l~~~~~~~-y~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~-f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~  193 (264)
T PF05096_consen  120 LKKIGTFP-YPGEGWGLT--SDGKRLIMSD-GSSRLYFLDPET-FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ  193 (264)
T ss_dssp             TEEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred             ceEEEEEe-cCCcceEEE--cCCCEEEEEC-CccceEEECCcc-cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence            88888875 344556777  5677777776 688899999876 444455443322222   3345554 6766666666


Q ss_pred             CCcEEEEeCCCCCCCCCCCcccccccccee---------------cccccccceeeeccCCCcccceeeEEee
Q psy2305         268 NGDLSIWNVNTSNLPSSPYEESVQEPLYKF---------------SAHQDCTNGVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       268 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~~~~~~~s~~~~~~~~~l~t~  325 (334)
                      ...|...|..+|.            ....+               ....+..+.++|  .|...   ++++||
T Consensus       194 td~I~~Idp~tG~------------V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy--d~~~~---~l~vTG  249 (264)
T PF05096_consen  194 TDRIVRIDPETGK------------VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY--DPETD---RLFVTG  249 (264)
T ss_dssp             SSEEEEEETTT-B------------EEEEEE-HHHHHHHTSTTST--TTS-EEEEEE--ETTTT---EEEEEE
T ss_pred             CCeEEEEeCCCCe------------EEEEEEhhHhhhcccccccccccCCeeEeEeE--eCCCC---EEEEEe
Confidence            6778888888873            22211               011346799999  88762   556665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.49  E-value=0.033  Score=44.18  Aligned_cols=183  Identities=14%  Similarity=0.059  Sum_probs=107.7

Q ss_pred             eEEEEcCCCcEEEEeeCCC--eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           5 EDVDEAPDGTCLLTNSNDN--HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      ..+.|..+|.++-+.+.-|  .|+.+|+.+++.......+...+           ++.+.-          . ++++...
T Consensus        48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F-----------gEGit~----------~-~d~l~qL  105 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF-----------GEGITI----------L-GDKLYQL  105 (264)
T ss_dssp             EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------------EEEEEE----------E-TTEEEEE
T ss_pred             ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc-----------ceeEEE----------E-CCEEEEE
Confidence            4567767787777777555  79999999998653222111111           111111          1 3344444


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc-cccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF-RKNI  160 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~  160 (334)
                      .-.++...+||..+.+.+..+.-..      .=+.++  .|++.|+.+. ...+.++|..+ -+......+...+ .-..
T Consensus       106 TWk~~~~f~yd~~tl~~~~~~~y~~------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~-f~~~~~i~V~~~g~pv~~  176 (264)
T PF05096_consen  106 TWKEGTGFVYDPNTLKKIGTFPYPG------EGWGLT--SDGKRLIMSDGSSRLYFLDPET-FKEVRTIQVTDNGRPVSN  176 (264)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEE-SS------S--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---
T ss_pred             EecCCeEEEEccccceEEEEEecCC------cceEEE--cCCCEEEEECCccceEEECCcc-cceEEEEEEEECCEECCC
Confidence            5578899999999988888876432      336676  5666676554 78899999875 3343332211111 1234


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc---------------CCCCeEEEEEccCCcEEEeee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG---------------HNGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~  220 (334)
                      ++.+.|- +|. +.|=.-....|...|..+|+.+..+.-               ...-.+.++|.|....|+..+
T Consensus       177 LNELE~i-~G~-IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  177 LNELEYI-NGK-IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEEEE-TTE-EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             cEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            6667776 565 666566677888899999987765510               124578999999777666655

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.44  E-value=0.082  Score=47.45  Aligned_cols=207  Identities=10%  Similarity=0.038  Sum_probs=110.3

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW   92 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw   92 (334)
                      +..|++++.++.|.-+|..+++..-.+.......           .....+.....+.+++  .+..++.++.|+.+.-.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~-----------~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~AL  135 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDD-----------VIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVAL  135 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcc-----------cccccccccccccceE--ECCEEEEEcCCCEEEEE
Confidence            4467777778889999999988753221110000           0000000000011111  23456677789999999


Q ss_pred             eCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee------CCcEEEEEcCCCCCeeeeeccccccc---------
Q psy2305          93 DSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF------LSEVKIFSTDRPGRECVSRNLKPWFR---------  157 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~---------  157 (334)
                      |.++|+.+............ .+.+--.-.++..++..+      +|.|..+|.++ ++.+-.... ....         
T Consensus       136 Da~TGk~~W~~~~~~~~~~~-~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~T-G~~lW~~~~-~p~~~~~~~~~~~  212 (527)
T TIGR03075       136 DAKTGKVVWSKKNGDYKAGY-TITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKT-GKLVWRRYT-VPGDMGYLDKADK  212 (527)
T ss_pred             ECCCCCEEeecccccccccc-cccCCcEEECCEEEEeecccccCCCcEEEEEECCC-CceeEeccC-cCCCccccccccc
Confidence            99999998776542211000 111100011344333221      57888889887 555443221 1000         


Q ss_pred             -------------------ccc-eEEEEEcCCCCcEEEEeecC-----C-----------eEEEEECCCCCceEeeccCC
Q psy2305         158 -------------------KNI-VSAIAINPVHPDICALGTYS-----K-----------IIGLFSDSDGRPLFFLKGHN  201 (334)
Q Consensus       158 -------------------~~~-v~~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~  201 (334)
                                         ... =..+++.|... +++.+..+     +           .|.-.|+++++..-.++...
T Consensus       213 ~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~  291 (527)
T TIGR03075       213 PVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTP  291 (527)
T ss_pred             ccccccccCCCCCCccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCC
Confidence                               001 11346677666 66655422     2           67778889998877665422


Q ss_pred             CCeE---------EEEEccCCc---EEEeeecCCCeEEEEEccCCCccc
Q psy2305         202 GGIT---------HLEFSSNGI---LLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       202 ~~i~---------~~~~~~~~~---~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      ..+.         =+....+|+   .++.+. .+|.+++.|.++ ++++
T Consensus       292 ~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~-K~G~~~vlDr~t-G~~i  338 (527)
T TIGR03075       292 HDEWDYDGVNEMILFDLKKDGKPRKLLAHAD-RNGFFYVLDRTN-GKLL  338 (527)
T ss_pred             CCCccccCCCCcEEEEeccCCcEEEEEEEeC-CCceEEEEECCC-Ccee
Confidence            2221         122234665   677788 899999999987 6554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1897|consensus

Probab=97.42  E-value=0.11  Score=48.45  Aligned_cols=259  Identities=12%  Similarity=0.004  Sum_probs=137.4

Q ss_pred             eEEEEcCCCcEEEEeeCCCeEEEEECC--CCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc----
Q psy2305           5 EDVDEAPDGTCLLTNSNDNHLRTFDLP--SELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS----   78 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~----   78 (334)
                      .-.+|--|..+|+++..||.+.-|.+.  +++....-.......|...+.++......|.++.-.|. +-++.+++    
T Consensus       587 l~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~-viY~~n~kLv~s  665 (1096)
T KOG1897|consen  587 LLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPT-VIYSSNGKLVYS  665 (1096)
T ss_pred             eeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCE-EEEecCCcEEEe
Confidence            334455567899999999998876554  44433222222333344445555555555655544442 22222222    


Q ss_pred             --------------------EEEEeeCCCcEEEEeCCCCee--eEEEcCccccccccceeEEEEcCCCCEEEEeeC----
Q psy2305          79 --------------------YFLCSSMYAPIHLWDSVGGEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL----  132 (334)
Q Consensus        79 --------------------~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d----  132 (334)
                                          .|+++. .+.+++..+..-+.  .+++..+.      .+..+++.+....+.+.++    
T Consensus       666 pls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~------~prrI~~q~~sl~~~v~s~r~e~  738 (1096)
T KOG1897|consen  666 PLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGE------SPRRICYQESSLTFGVLSNRIES  738 (1096)
T ss_pred             ccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCC------ChhheEecccceEEEEEeccccc
Confidence                                233333 34466655443222  23333322      4567777774444443221    


Q ss_pred             -----------CcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee----------cCCeEEEEECCCC
Q psy2305         133 -----------SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT----------YSKIIGLFSDSDG  191 (334)
Q Consensus       133 -----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~  191 (334)
                                 ..++++|-++ -+.+......-....-.+.++.|..|...++++|+          ..|.|.+|.....
T Consensus       739 ~~~~~~ee~~~s~l~vlD~nT-f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~  817 (1096)
T KOG1897|consen  739 SAEYYGEEYEVSFLRVLDQNT-FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL  817 (1096)
T ss_pred             chhhcCCcceEEEEEEecCCc-eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC
Confidence                       1355566554 22111110001111224555568777443777774          2478888888774


Q ss_pred             CceEeeccC--CCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC
Q psy2305         192 RPLFFLKGH--NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG  269 (334)
Q Consensus       192 ~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg  269 (334)
                      +.+.....+  .+.+.++..- +|++||.-   ...|++|+... ++.++.-..+  ...+..+...-.|..+++|..-+
T Consensus       818 ~~L~~v~e~~v~Gav~aL~~f-ngkllA~I---n~~vrLye~t~-~~eLr~e~~~--~~~~~aL~l~v~gdeI~VgDlm~  890 (1096)
T KOG1897|consen  818 NSLELVAETVVKGAVYALVEF-NGKLLAGI---NQSVRLYEWTT-ERELRIECNI--SNPIIALDLQVKGDEIAVGDLMR  890 (1096)
T ss_pred             Cceeeeeeeeeccceeehhhh-CCeEEEec---CcEEEEEEccc-cceehhhhcc--cCCeEEEEEEecCcEEEEeeccc
Confidence            444433222  3444444322 57666543   56899999987 4444433333  44566677778899999998888


Q ss_pred             cEEEEeCCCC
Q psy2305         270 DLSIWNVNTS  279 (334)
Q Consensus       270 ~i~iwd~~~~  279 (334)
                      ++.+...+..
T Consensus       891 Sitll~y~~~  900 (1096)
T KOG1897|consen  891 SITLLQYKGD  900 (1096)
T ss_pred             eEEEEEEecc
Confidence            8877665543

>PHA02713 hypothetical protein; Provisional

Probab=97.42  E-value=0.055  Score=48.97  Aligned_cols=187  Identities=9%  Similarity=-0.040  Sum_probs=91.1

Q ss_pred             CCcEEEEeeCC------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEcCCC
Q psy2305          76 FTSYFLCSSMY------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFSTDRP  143 (334)
Q Consensus        76 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~  143 (334)
                      ++.+++.|+.+      ..+..||..++.... +.......   .-.+++ .-+|+..+.|+ +     ..+..||..+.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R---~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNR---CRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchh---hceeEE-EECCEEEEECCcCCCCCCceEEEEECCCC
Confidence            67777787753      347788887765432 21111100   111222 23566666665 4     24788998752


Q ss_pred             CCeeeeecccccccccceEEEEEcCCCCcEEEEeecCC-----------------------eEEEEECCCCC--ceEeec
Q psy2305         144 GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK-----------------------IIGLFSDSDGR--PLFFLK  198 (334)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~--~~~~~~  198 (334)
                      .  ....+ .+.........+.  -++. +.+.|+.++                       .+..||.++.+  .+..+.
T Consensus       378 ~--W~~~~-~mp~~r~~~~~~~--~~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~  451 (557)
T PHA02713        378 K--WKMLP-DMPIALSSYGMCV--LDQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW  451 (557)
T ss_pred             e--EEECC-CCCcccccccEEE--ECCE-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC
Confidence            1  11110 1111111111222  2565 777777542                       47778876653  222222


Q ss_pred             cCCCCeEEEEEccCCcEEEeeecCC------CeEEEEEccC-C-CccceeecccccCCceEEEEecCCCceEEeeecCC-
Q psy2305         199 GHNGGITHLEFSSNGILLFSGARKD------CEIICWDLRN-P-GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG-  269 (334)
Q Consensus       199 ~~~~~i~~~~~~~~~~~l~~~~~~d------~~i~iwd~~~-~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-  269 (334)
                      ...... +++ .-+++..+.|+ .+      ..+..||..+ . -..+..+......   ..++ .-+|++.++|+.++ 
T Consensus       452 ~~r~~~-~~~-~~~~~IYv~GG-~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~---~~~~-~~~~~iyv~Gg~~~~  524 (557)
T PHA02713        452 TGTIRP-GVV-SHKDDIYVVCD-IKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA---LHTI-LHDNTIMMLHCYESY  524 (557)
T ss_pred             cccccC-cEE-EECCEEEEEeC-CCCCCccceeEEEecCCCCCCeeEccccCccccc---ceeE-EECCEEEEEeeecce
Confidence            111111 122 23566666665 33      2467788875 1 1222222221111   1121 23788889999888 


Q ss_pred             -cEEEEeCCCCC
Q psy2305         270 -DLSIWNVNTSN  280 (334)
Q Consensus       270 -~i~iwd~~~~~  280 (334)
                       .+..||..+.+
T Consensus       525 ~~~e~yd~~~~~  536 (557)
T PHA02713        525 MLQDTFNVYTYE  536 (557)
T ss_pred             eehhhcCccccc
Confidence             77788888763

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.40  E-value=0.046  Score=43.68  Aligned_cols=160  Identities=11%  Similarity=0.064  Sum_probs=102.9

Q ss_pred             EEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEE
Q psy2305          61 IYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFS  139 (334)
Q Consensus        61 v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d  139 (334)
                      +.++.|       +|+.+.|++......-.++=..+|+.++++....-.    ....+.+..+|++.++-. ++.+.++.
T Consensus        88 vS~LTy-------np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~----DpE~Ieyig~n~fvi~dER~~~l~~~~  156 (316)
T COG3204          88 VSSLTY-------NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS----DPETIEYIGGNQFVIVDERDRALYLFT  156 (316)
T ss_pred             ccceee-------CCCcceEEEecCCCceEEEEecCCceEEEecccccC----ChhHeEEecCCEEEEEehhcceEEEEE
Confidence            666666       779898888887777777766789998887654322    445788888888777776 88999888


Q ss_pred             cCCCCCeeee----eccccccc-ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC-c--eEeeccC-------CCCe
Q psy2305         140 TDRPGRECVS----RNLKPWFR-KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR-P--LFFLKGH-------NGGI  204 (334)
Q Consensus       140 ~~~~~~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~--~~~~~~~-------~~~i  204 (334)
                      +......+..    .++....+ ....-.++|.|... .|..+-+..-+.||...... .  ......+       -..+
T Consensus       157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EcCCccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            8763333221    11112222 45677999999998 77777777767777664322 1  1111111       1346


Q ss_pred             EEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         205 THLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       205 ~~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      .++.|.+....|++-+.+++.+.-.|..
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecC
Confidence            7888987554444444267777777766

>KOG2079|consensus

Probab=97.36  E-value=0.0013  Score=60.70  Aligned_cols=99  Identities=24%  Similarity=0.431  Sum_probs=73.5

Q ss_pred             EEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccC-Cce
Q psy2305         173 ICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST-NQR  250 (334)
Q Consensus       173 ~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~  250 (334)
                      .++.|+..|.+-..|+... .+...=..-.++|++++|+.+|+.++.|- .+|.|.+||+.. +++++.+..+..+ ..+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~-~~G~V~v~D~~~-~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGL-GDGHVTVWDMHR-AKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceecccc-CCCcEEEEEccC-CcceeeeeecCCccceE
Confidence            7888999999999998653 11122233457899999999999999999 899999999998 7777777655433 234


Q ss_pred             EEEEecCCCceEEeeecCCcEEEEe
Q psy2305         251 VYFDLTSCSNYLLSGNTNGDLSIWN  275 (334)
Q Consensus       251 ~~~~~s~~~~~l~~~~~dg~i~iwd  275 (334)
                      ..+.+..++..+.++...|.  +|+
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEE
Confidence            55566667777888877775  454

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=97.34  E-value=0.0086  Score=51.24  Aligned_cols=146  Identities=14%  Similarity=0.080  Sum_probs=97.9

Q ss_pred             CCcEEE-EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC--------CEEEEeeCCcEEEEEcCCCCCe
Q psy2305          76 FTSYFL-CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG--------NKIYAGFLSEVKIFSTDRPGRE  146 (334)
Q Consensus        76 ~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~d~~i~i~d~~~~~~~  146 (334)
                      +..+|+ .++....++-.|++.|+.+.....+.      .+ -+.|.|+.        +.|+.-++..|.-.|.+..+..
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~d------dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK  550 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK  550 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCC------cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence            344443 45555677778999999988887654      33 67788754        2344446888888888876644


Q ss_pred             eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305         147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEI  226 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i  226 (334)
                      +......-...+....+..-..+|  ++|.++..|.|++||--.-+...-+++-...|-.+..+.+|+++++.+  ...+
T Consensus       551 i~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yl  626 (776)
T COG5167         551 IKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYL  626 (776)
T ss_pred             eeeeeehhccccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceE
Confidence            432111112223334444444455  899999999999999543344445677778899999999999988776  6788


Q ss_pred             EEEEcc
Q psy2305         227 ICWDLR  232 (334)
Q Consensus       227 ~iwd~~  232 (334)
                      .+-|++
T Consensus       627 lL~d~~  632 (776)
T COG5167         627 LLTDVP  632 (776)
T ss_pred             EEEecc
Confidence            888876

>smart00320 WD40 WD40 repeats

Probab=97.33  E-value=0.00071  Score=35.76  Aligned_cols=34  Identities=18%  Similarity=0.108  Sum_probs=30.2

Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEE
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFS  187 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d  187 (334)
                      .+..|...+.++.|++++. .+++++.|+.+++|+
T Consensus         7 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        7 TLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            3556788999999999998 999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.33  E-value=0.08  Score=45.04  Aligned_cols=203  Identities=11%  Similarity=0.076  Sum_probs=93.6

Q ss_pred             CCcEEEEee-CCCcEEEEeCCC----CeeeEEEcCccc--cccccceeEEEEcCCCCEEEEe--e-C----CcEEEEEcC
Q psy2305          76 FTSYFLCSS-MYAPIHLWDSVG----GEIKATYRPYNQ--VDEVTHAYSLAFSLDGNKIYAG--F-L----SEVKIFSTD  141 (334)
Q Consensus        76 ~~~~l~~~~-~d~~i~iwd~~~----~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~--~-d----~~i~i~d~~  141 (334)
                      +.++|+..+ ..+.|.|.|+.+    .+..+.++...-  .........+..-|+|+.++++  . +    |.+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            455666655 778999999873    345555553110  0111144556667899888864  2 2    457777766


Q ss_pred             CCCCeeeeecccccccccceEEEEEcCCCCcEEEEee--------------------cCCeEEEEECCCCCceEeeccCC
Q psy2305         142 RPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT--------------------YSKIIGLFSDSDGRPLFFLKGHN  201 (334)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~~~~~  201 (334)
                      + -....... .-.+....-..+-|.|..+ .+++..                    ...++.+||+.+.+.++++.-..
T Consensus       166 t-f~v~g~We-~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~  242 (461)
T PF05694_consen  166 T-FEVKGRWE-KDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE  242 (461)
T ss_dssp             T---EEEE---SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred             c-ccccceec-cCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence            4 22222110 1111223445777888777 777653                    23489999999999999886433


Q ss_pred             C--CeEEEEEcc--CCcEEEeeecCCCeEEEEEccCCCc----cceeecccc---------------cCCceEEEEecCC
Q psy2305         202 G--GITHLEFSS--NGILLFSGARKDCEIICWDLRNPGC----ILHTFPRQV---------------STNQRVYFDLTSC  258 (334)
Q Consensus       202 ~--~i~~~~~~~--~~~~l~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~---------------~~~~~~~~~~s~~  258 (334)
                      .  ....+.|..  +..+=++++.-..+|..|--...+.    .+-.+....               ...-++.+..|.|
T Consensus       243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD  322 (461)
T PF05694_consen  243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD  322 (461)
T ss_dssp             TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred             CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence            2  345677754  4444333331455665554422122    111111110               0234567889999


Q ss_pred             CceEEeee-cCCcEEEEeCCCCCC
Q psy2305         259 SNYLLSGN-TNGDLSIWNVNTSNL  281 (334)
Q Consensus       259 ~~~l~~~~-~dg~i~iwd~~~~~~  281 (334)
                      .++|...+ .+|.|+.||+.....
T Consensus       323 DrfLYvs~W~~GdvrqYDISDP~~  346 (461)
T PF05694_consen  323 DRFLYVSNWLHGDVRQYDISDPFN  346 (461)
T ss_dssp             S-EEEEEETTTTEEEEEE-SSTTS
T ss_pred             CCEEEEEcccCCcEEEEecCCCCC
Confidence            99997665 489999999998643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2079|consensus

Probab=97.30  E-value=0.0015  Score=60.45  Aligned_cols=101  Identities=14%  Similarity=0.083  Sum_probs=72.7

Q ss_pred             CCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC
Q psy2305         123 DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN  201 (334)
Q Consensus       123 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  201 (334)
                      .+..++.|+ .|.+-..|+...-+...    .-....++|++++|+.+|. .++.|-.+|.|.+||+..++..+.+..|.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~----~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLH----QNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHG  172 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhh----cCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecC
Confidence            345677676 78899888874211111    2344567999999999999 99999999999999999999998887776


Q ss_pred             CCeEEEE---EccCCcEEEeeecCCCeEEEEEc
Q psy2305         202 GGITHLE---FSSNGILLFSGARKDCEIICWDL  231 (334)
Q Consensus       202 ~~i~~~~---~~~~~~~l~~~~~~d~~i~iwd~  231 (334)
                      .+.+++-   +..++..++++. ..|.  +|.+
T Consensus       173 ap~t~vi~v~~t~~nS~llt~D-~~Gs--f~~l  202 (1206)
T KOG2079|consen  173 APVTGVIFVGRTSQNSKLLTSD-TGGS--FWKL  202 (1206)
T ss_pred             CccceEEEEEEeCCCcEEEEcc-CCCc--eEEE
Confidence            6655543   344555677776 5665  5554

>KOG4441|consensus

Probab=97.29  E-value=0.088  Score=47.67  Aligned_cols=219  Identities=11%  Similarity=0.069  Sum_probs=113.8

Q ss_pred             CCcEEEEeeCCC------cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C------CcEEEEEcCC
Q psy2305          76 FTSYFLCSSMYA------PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L------SEVKIFSTDR  142 (334)
Q Consensus        76 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d------~~i~i~d~~~  142 (334)
                      .+.+++.|+.++      .+..+|..+++...........    .-.+++... +...++|+ +      .++..||...
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r----~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR----CRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc----ccccEEEEC-CEEEEEccccCCCcccceEEEecCCC
Confidence            456777777763      5778898887554433322111    233445443 35555665 6      3577888875


Q ss_pred             CCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCC-----eEEEEECCCCC--ceEeeccCCCCeEEEEEccCCcE
Q psy2305         143 PGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK-----IIGLFSDSDGR--PLFFLKGHNGGITHLEFSSNGIL  215 (334)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~  215 (334)
                      ..  -...+ .+........ ++ .-+|. +.++|+.||     ++-.||.++.+  .+..+..........  .-+|+.
T Consensus       359 ~~--W~~~a-~M~~~R~~~~-v~-~l~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~i  430 (571)
T KOG4441|consen  359 NQ--WTPVA-PMNTKRSDFG-VA-VLDGK-LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKL  430 (571)
T ss_pred             Cc--eeccC-CccCccccce-eE-EECCE-EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEE
Confidence            22  22111 1221111111 11 12455 888899887     47788876653  222222111111112  235776


Q ss_pred             EEeeecCCC------eEEEEEccCCCcc--ceeecccccCCceEEEEecCCCceEEeeecCC-----cEEEEeCCCCCCC
Q psy2305         216 LFSGARKDC------EIICWDLRNPGCI--LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG-----DLSIWNVNTSNLP  282 (334)
Q Consensus       216 l~~~~~~d~------~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~  282 (334)
                      .++|+ .++      ++..||..+ ..-  +..........   .++ .-++.+.+.|+.|+     +|..||..+.+  
T Consensus       431 Yi~GG-~~~~~~~l~sve~YDP~t-~~W~~~~~M~~~R~~~---g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~--  502 (571)
T KOG4441|consen  431 YIIGG-GDGSSNCLNSVECYDPET-NTWTLIAPMNTRRSGF---GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ--  502 (571)
T ss_pred             EEEcC-cCCCccccceEEEEcCCC-CceeecCCcccccccc---eEE-EECCEEEEECCccCCCccceEEEEcCCCCc--
Confidence            66766 443      467788775 221  11111110111   121 23678888888776     37778888763  


Q ss_pred             CCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceee
Q psy2305         283 SSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i  331 (334)
                              |..+..+......+..+.+    ++    ...+.|+.||.-
T Consensus       503 --------W~~v~~m~~~rs~~g~~~~----~~----~ly~vGG~~~~~  535 (571)
T KOG4441|consen  503 --------WTMVAPMTSPRSAVGVVVL----GG----KLYAVGGFDGNN  535 (571)
T ss_pred             --------eeEcccCccccccccEEEE----CC----EEEEEecccCcc
Confidence                    2444444444444444455    66    778888888754

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.20  E-value=0.0017  Score=36.44  Aligned_cols=30  Identities=10%  Similarity=0.116  Sum_probs=27.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECC
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLP   31 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~   31 (334)
                      ..|.+++|+|...+||.++.+|.|.+|.+.
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            368899999999999999999999999984

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.19  E-value=0.02  Score=50.02  Aligned_cols=124  Identities=6%  Similarity=-0.029  Sum_probs=73.2

Q ss_pred             eeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCC-----CCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C
Q psy2305          59 GIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSV-----GGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L  132 (334)
Q Consensus        59 ~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d  132 (334)
                      +-|+++.|.|.+.+   +...|++......|.+|.+.     .++.+..-..+-....+--...+.|+|....|++-. .
T Consensus        57 EhV~GlsW~P~~~~---~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~  133 (671)
T PF15390_consen   57 EHVHGLSWAPPCTA---DTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR  133 (671)
T ss_pred             ceeeeeeecCcccC---CCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence            56999999885433   33234445567789999875     223322211111111111234778999998888554 3


Q ss_pred             CcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC
Q psy2305         133 SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS  189 (334)
Q Consensus       133 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~  189 (334)
                      ..-.++++......++.   .. ...+.|.|.+|.+||+.+++..+..=.-++||-.
T Consensus       134 dvSV~~sV~~d~srVka---Di-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKA---DI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ceeEeeeeeeCCceEEE---ec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            33345677654544442   23 4467899999999999444444444556788853

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.18  E-value=0.15  Score=44.95  Aligned_cols=122  Identities=13%  Similarity=0.118  Sum_probs=69.2

Q ss_pred             CceeEEEEcCC----CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           2 DIEEDVDEAPD----GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         2 d~V~~~~~sp~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      +-|..+.|.|-    -..|++......|.||.+.......       .-+-+..+-+..+.-+     -.|..+.|+|..
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~-------~K~l~sQtcEi~e~~p-----vLpQGCVWHPk~  124 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTER-------NKLLMSQTCEIREPFP-----VLPQGCVWHPKK  124 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcccc-------ccceeeeeeeccCCcc-----cCCCcccccCCC
Confidence            56899999994    2245555677889999986332210       0000001111111111     134556668888


Q ss_pred             cEEEEeeCCCcEEEEeCCCC--eeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcC
Q psy2305          78 SYFLCSSMYAPIHLWDSVGG--EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTD  141 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~  141 (334)
                      ..|++-.....-.++++...  +....++..+      .|.|.+|.+||+.|+++-  .=.-++||-.
T Consensus       125 ~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G------~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  125 AILTVLTARDVSVLPSVHCDSSRVKADIKTSG------LIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ceEEEEecCceeEeeeeeeCCceEEEeccCCc------eEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            88776554433334555432  3333444322      799999999999998664  4456678755

>KOG4441|consensus

Probab=97.17  E-value=0.15  Score=46.19  Aligned_cols=186  Identities=11%  Similarity=0.092  Sum_probs=92.8

Q ss_pred             CCcEEEEeeCC-C-----cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC-----cEEEEEcCCC
Q psy2305          76 FTSYFLCSSMY-A-----PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS-----EVKIFSTDRP  143 (334)
Q Consensus        76 ~~~~l~~~~~d-~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~-----~i~i~d~~~~  143 (334)
                      ++.+.++|+.| |     ++..||..+++....-.-... .   .-..++ .-+|...++|+ ||     ++..||..+.
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~-R---~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~  406 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK-R---SDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTN  406 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc-c---ccceeE-EECCEEEEEeccccccccccEEEecCCCC
Confidence            67788899888 3     567888877765432111111 0   001111 12456666665 64     5778888753


Q ss_pred             CCeeeeecccccccccceEEEEE-cCCCCcEEEEeecCC------eEEEEECCCCC--ceEeeccCCCCeEEEEEccCCc
Q psy2305         144 GRECVSRNLKPWFRKNIVSAIAI-NPVHPDICALGTYSK------IIGLFSDSDGR--PLFFLKGHNGGITHLEFSSNGI  214 (334)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg------~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~  214 (334)
                      .-...      ........+... .-+|. +.++|+.++      .+..||..+++  .+..+....... .++. -++.
T Consensus       407 ~W~~v------a~m~~~r~~~gv~~~~g~-iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~  477 (571)
T KOG4441|consen  407 KWTPV------APMLTRRSGHGVAVLGGK-LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGK  477 (571)
T ss_pred             ccccc------CCCCcceeeeEEEEECCE-EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCE
Confidence            22211      111112222222 23555 777787554      57788887653  222222111111 1322 2566


Q ss_pred             EEEeeecCCC-----eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC-----cEEEEeCCCC
Q psy2305         215 LLFSGARKDC-----EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG-----DLSIWNVNTS  279 (334)
Q Consensus       215 ~l~~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~  279 (334)
                      ..+.|+ .|+     ++..||..+ .+- .....-........++ .-+++..++|+.||     +|..||..+.
T Consensus       478 iYvvGG-~~~~~~~~~VE~ydp~~-~~W-~~v~~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  478 IYVVGG-FDGTSALSSVERYDPET-NQW-TMVAPMTSPRSAVGVV-VLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             EEEECC-ccCCCccceEEEEcCCC-Cce-eEcccCccccccccEE-EECCEEEEEecccCccccceeEEcCCCCC
Confidence            777777 565     367788875 221 1111110111111111 23567778888775     5677777665

>KOG2444|consensus

Probab=97.16  E-value=0.0019  Score=49.20  Aligned_cols=104  Identities=14%  Similarity=0.150  Sum_probs=65.0

Q ss_pred             CCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEE-EEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC
Q psy2305         124 GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSA-IAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN  201 (334)
Q Consensus       124 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  201 (334)
                      +..+++|. +|.|.+|.....+.....    ...-...+.+ +.-..++. +..++..+|.|+.|++.-++.+.....|.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~----~~s~~e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDR----VCSGEESIDLGIPNGRDSS-LGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHh----hhcccccceeccccccccc-eeEEeccCCceeeeccccCceeeeecccc
Confidence            45677776 999999998854443332    1222233333 33333344 88899999999999998877776666565


Q ss_pred             -CCeEEEEEccCCcEEEee--ecCCCeEEEEEccC
Q psy2305         202 -GGITHLEFSSNGILLFSG--ARKDCEIICWDLRN  233 (334)
Q Consensus       202 -~~i~~~~~~~~~~~l~~~--~~~d~~i~iwd~~~  233 (334)
                       .++..+..+..++.|..+  + .|..++.|++..
T Consensus       145 ~~~~e~~ivv~sd~~i~~a~~S-~d~~~k~W~ve~  178 (238)
T KOG2444|consen  145 FESGEELIVVGSDEFLKIADTS-HDRVLKKWNVEK  178 (238)
T ss_pred             CCCcceeEEecCCceEEeeccc-cchhhhhcchhh
Confidence             444445455555555555  5 566666666653

>KOG1897|consensus

Probab=97.15  E-value=0.22  Score=46.52  Aligned_cols=105  Identities=11%  Similarity=0.037  Sum_probs=66.1

Q ss_pred             eEEEEEccC-CcEEEeeec---------CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEE
Q psy2305         204 ITHLEFSSN-GILLFSGAR---------KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSI  273 (334)
Q Consensus       204 i~~~~~~~~-~~~l~~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i  273 (334)
                      |.+..|..| +.++++|..         ..|.|.++.+.. .+.++....+...+.+.++. --+|++||.-  +..|++
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~v~Gav~aL~-~fngkllA~I--n~~vrL  852 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETVVKGAVYALV-EFNGKLLAGI--NQSVRL  852 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeeeeccceeehh-hhCCeEEEec--CcEEEE
Confidence            444557666 667777752         357888888876 45555555554556666553 2367777754  567999


Q ss_pred             EeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeeccee
Q psy2305         274 WNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQIT  330 (334)
Q Consensus       274 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~  330 (334)
                      |+..+.            +.+..-..+...+..+..  .-.+    ..++.|.-=++
T Consensus       853 ye~t~~------------~eLr~e~~~~~~~~aL~l--~v~g----deI~VgDlm~S  891 (1096)
T KOG1897|consen  853 YEWTTE------------RELRIECNISNPIIALDL--QVKG----DEIAVGDLMRS  891 (1096)
T ss_pred             EEcccc------------ceehhhhcccCCeEEEEE--EecC----cEEEEeeccce
Confidence            999987            344444455556666666  5566    66666654443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.15  E-value=0.0023  Score=35.93  Aligned_cols=34  Identities=21%  Similarity=0.208  Sum_probs=30.0

Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP  193 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  193 (334)
                      ...|..++|+|..+ ++|.++.+|.|.+|.+ +++.
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence            45699999999999 9999999999999998 5544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.13  E-value=0.015  Score=52.24  Aligned_cols=111  Identities=14%  Similarity=0.104  Sum_probs=72.7

Q ss_pred             cCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcE
Q psy2305          10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPI   89 (334)
Q Consensus        10 sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i   89 (334)
                      |.-++..++-+....+.|||...+...              ..-.....+.|.++.|..     .|+++.+++.+..+.|
T Consensus        38 ss~~k~a~V~~~~~~LtIWD~~~~~lE--------------~~~~f~~~~~I~dLDWts-----t~d~qsiLaVGf~~~v   98 (631)
T PF12234_consen   38 SSIKKIAVVDSSRSELTIWDTRSGVLE--------------YEESFSEDDPIRDLDWTS-----TPDGQSILAVGFPHHV   98 (631)
T ss_pred             cccCcEEEEECCCCEEEEEEcCCcEEE--------------EeeeecCCCceeeceeee-----cCCCCEEEEEEcCcEE
Confidence            333444444444568999999888754              122223468899999964     7899999999999999


Q ss_pred             EEEeCC---------CCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCC
Q psy2305          90 HLWDSV---------GGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDR  142 (334)
Q Consensus        90 ~iwd~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~  142 (334)
                      .++.-.         +...++.+....+..+  +|.+..|.++|. |++|+++.+.++|-..
T Consensus        99 ~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h--~Igds~Wl~~G~-LvV~sGNqlfv~dk~~  157 (631)
T PF12234_consen   99 LLYTQLRYDYTNKGPSWAPIRKIDISSHTPH--PIGDSIWLKDGT-LVVGSGNQLFVFDKWL  157 (631)
T ss_pred             EEEEccchhhhcCCcccceeEEEEeecCCCC--CccceeEecCCe-EEEEeCCEEEEECCCc
Confidence            998431         1123344433223222  788999999985 5556677888887543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.13  E-value=0.13  Score=43.32  Aligned_cols=240  Identities=12%  Similarity=0.035  Sum_probs=113.2

Q ss_pred             cccceecCCCcEEEEeeCCCcEEEEeCCCCee---eEEEcCccccccccceeEEEEcCC---CCEEEEe-e-C-------
Q psy2305          68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEI---KATYRPYNQVDEVTHAYSLAFSLD---GNKIYAG-F-L-------  132 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~-~-d-------  132 (334)
                      |..++|.|||+++++ .+.|.|++++ ..+..   +..+... ..........++++|+   ..+|+.. . .       
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v-~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEV-FADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTT-BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccc-cccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            455677889987665 5699999999 45544   2223211 1111227899999995   3444432 2 1       


Q ss_pred             -CcEEEEEcCCCCCeeeeec-c--ccc---ccccceEEEEEcCCCCcEEEEeecC-------------CeEEEEECCCCC
Q psy2305         133 -SEVKIFSTDRPGRECVSRN-L--KPW---FRKNIVSAIAINPVHPDICALGTYS-------------KIIGLFSDSDGR  192 (334)
Q Consensus       133 -~~i~i~d~~~~~~~~~~~~-~--~~~---~~~~~v~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~  192 (334)
                       ..|.-|............. +  ...   .....-..|+|.|+|. +.++.+..             |.|.-.+.. ++
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~  158 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GS  158 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SS
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCcccccccccccceEEEeccc-Cc
Confidence             2444455543211111100 0  111   1234456799999997 55544332             233333322 21


Q ss_pred             c-------------eEee-ccCCCCeEEEEEccC-CcEEEeeecCCCeEEEEEccCCCc---------------------
Q psy2305         193 P-------------LFFL-KGHNGGITHLEFSSN-GILLFSGARKDCEIICWDLRNPGC---------------------  236 (334)
Q Consensus       193 ~-------------~~~~-~~~~~~i~~~~~~~~-~~~l~~~~~~d~~i~iwd~~~~~~---------------------  236 (334)
                      .             ...+ .++. ....++|+|. |+++++=...+..=.|..+.. +.                     
T Consensus       159 ~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~-G~nYGWP~~~~~~~~~~~~~~~~  236 (331)
T PF07995_consen  159 IPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEP-GGNYGWPYCEGGPKYSGPPIGDA  236 (331)
T ss_dssp             B-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-T-T-B--TTTBSSSCSTTSS-ECTG
T ss_pred             CCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEecc-CCcCCCCCCcCCCCCCCCccccc
Confidence            0             0111 1222 2457999998 765554321232222322322 11                     


Q ss_pred             --------cceeecccccCCceEEEEecC-------CCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccce-eccc
Q psy2305         237 --------ILHTFPRQVSTNQRVYFDLTS-------CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK-FSAH  300 (334)
Q Consensus       237 --------~~~~~~~~~~~~~~~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~  300 (334)
                              +...+..   ...+..+.|-.       +|.++++.-..+.|....+......         ..... +...
T Consensus       237 ~~~~~~~~P~~~~~~---~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~---------~~~~~~~~~~  304 (331)
T PF07995_consen  237 PSCPGFVPPVFAYPP---HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSV---------TEEEEFLGGF  304 (331)
T ss_dssp             SS-TTS---SEEETT---T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEE---------EEEEEECTTS
T ss_pred             cCCCCcCccceeecC---ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCc---------cceEEccccC
Confidence                    0111111   12233344432       3455655555567777777643111         11122 2333


Q ss_pred             ccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         301 QDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      ...+.++++  .|||    .+.++...+|.|+
T Consensus       305 ~~r~~~v~~--~pDG----~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  305 GGRPRDVAQ--GPDG----ALYVSDDSDGKIY  330 (331)
T ss_dssp             SS-EEEEEE--ETTS----EEEEEE-TTTTEE
T ss_pred             CCCceEEEE--cCCC----eEEEEECCCCeEe
Confidence            447899999  9999    9888888899886

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=97.13  E-value=0.22  Score=46.17  Aligned_cols=81  Identities=15%  Similarity=0.144  Sum_probs=54.5

Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCC----------CCce---Eee--------ccCCCCeEEEEEccC---C
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSD----------GRPL---FFL--------KGHNGGITHLEFSSN---G  213 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~---~~~--------~~~~~~i~~~~~~~~---~  213 (334)
                      ...|..+.++|+|. +++..+..| |.|..+..          ++..   +++        ..+...|..+.|+|.   +
T Consensus        84 ~f~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   84 LFEVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             ceeEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            45788999999999 888777654 44444421          1110   111        134457889999996   4


Q ss_pred             cEEEeeecCCCeEEEEEccCCCccceee
Q psy2305         214 ILLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       214 ~~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                      ..|++-. .|+++++||+.....+...+
T Consensus       162 ~~l~vLt-sdn~lR~y~~~~~~~p~~v~  188 (717)
T PF10168_consen  162 SHLVVLT-SDNTLRLYDISDPQHPWQVL  188 (717)
T ss_pred             CeEEEEe-cCCEEEEEecCCCCCCeEEE
Confidence            7888888 79999999998655444433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3630|consensus

Probab=97.00  E-value=0.014  Score=54.67  Aligned_cols=147  Identities=13%  Similarity=0.064  Sum_probs=94.5

Q ss_pred             ceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCee--eeecc----cccccccceEEEEEcCCCCcEEEEeecCCeEE
Q psy2305         114 HAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGREC--VSRNL----KPWFRKNIVSAIAINPVHPDICALGTYSKIIG  184 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~--~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  184 (334)
                      ++..+...+|+...++..   +-.|..||++.-....  ...++    ..........++.|+|.-....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            566777788887766543   4478899987521111  11111    11222345678899998664566778899999


Q ss_pred             EEECCCCC-ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccc--ccCCceEEEEecCCCce
Q psy2305         185 LFSDSDGR-PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ--VSTNQRVYFDLTSCSNY  261 (334)
Q Consensus       185 i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~  261 (334)
                      +..+.... .+..+. -....++++|+|.|+.++.|- ..|++.-|...-  +....+...  .....+.++.|-....+
T Consensus       182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~-nnGt~vQy~P~l--eik~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGR-NNGTEVQYEPSL--EIKSEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhhhhhhhhcccC-cccceeeEEeccccceeeEec-CCCeEEEeeccc--ceeecccCCCcCCCcceeEEEEecceeE
Confidence            98875432 233333 455688999999999999998 899999998763  323333322  12456788888776666


Q ss_pred             EEe
Q psy2305         262 LLS  264 (334)
Q Consensus       262 l~~  264 (334)
                      +++
T Consensus       258 lvv  260 (1405)
T KOG3630|consen  258 LVV  260 (1405)
T ss_pred             EEE
Confidence            654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.95  E-value=0.054  Score=46.33  Aligned_cols=145  Identities=11%  Similarity=0.055  Sum_probs=76.0

Q ss_pred             cccceecCCCcEEEEee-----------CCC-cEEEEeCCC--Cee--eEEEcCccccccccceeEEEEcCCCCEEEEee
Q psy2305          68 PKTSSIDGFTSYFLCSS-----------MYA-PIHLWDSVG--GEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF  131 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~-----------~d~-~i~iwd~~~--~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (334)
                      |..++++++|+++++-.           ..+ .|.+++-.+  |+.  ...+..  ...   ....+++.+++ .+++..
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--~l~---~p~Gi~~~~~G-lyV~~~   89 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--ELS---MVTGLAVAVGG-VYVATP   89 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--CCC---CccceeEecCC-EEEeCC
Confidence            45567788999877643           223 677775432  322  222221  111   46789999998 444433


Q ss_pred             CCcEEEEEcCCCCCee---eeecccccc----cccceEEEEEcCCCCcEEEEeec-------------------CCeEEE
Q psy2305         132 LSEVKIFSTDRPGREC---VSRNLKPWF----RKNIVSAIAINPVHPDICALGTY-------------------SKIIGL  185 (334)
Q Consensus       132 d~~i~i~d~~~~~~~~---~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~-------------------dg~i~i  185 (334)
                      ....++.|.+..+..-   ......+..    +......++|.|+|. +.++-+.                   .|.|.-
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r  168 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFR  168 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEE
Confidence            4333344554211110   100001211    234577899999998 5443331                   145666


Q ss_pred             EECCCCCceEeeccCCCCeEEEEEccCCcEEEeee
Q psy2305         186 FSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       186 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  220 (334)
                      ++...++....-.++ .....++|+|+|+++++-.
T Consensus       169 ~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       169 YNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             EecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence            665544432222332 3346899999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA02713 hypothetical protein; Provisional

Probab=96.95  E-value=0.2  Score=45.40  Aligned_cols=206  Identities=14%  Similarity=0.036  Sum_probs=98.7

Q ss_pred             cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C------CcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          88 PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L------SEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        88 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      .+..||..+++....-......    .-.+++. -++...+.|+ +      ..+..||..+.  .....+ .+......
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r----~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n--~W~~~~-~m~~~R~~  344 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHI----INYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENK--IHVELP-PMIKNRCR  344 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccc----cceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCC--eEeeCC-CCcchhhc
Confidence            5677888776543321111110    1112222 2555556654 3      34777887752  212111 11111111


Q ss_pred             eEEEEEcCCCCcEEEEeecCC-----eEEEEECCCCC--ceEeeccCCCCeEEEEEccCCcEEEeeecCC----------
Q psy2305         161 VSAIAINPVHPDICALGTYSK-----IIGLFSDSDGR--PLFFLKGHNGGITHLEFSSNGILLFSGARKD----------  223 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d----------  223 (334)
                      . +++ .-++. +.+.|+.++     .+..||..+.+  .+..+.........+.  -+|+..+.|+ .+          
T Consensus       345 ~-~~~-~~~g~-IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG-~~~~~~~~~~~~  418 (557)
T PHA02713        345 F-SLA-VIDDT-IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGG-RTEHIDYTSVHH  418 (557)
T ss_pred             e-eEE-EECCE-EEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeC-CCcccccccccc
Confidence            2 222 23555 778888754     48889987653  2222221111111222  2577666676 44          


Q ss_pred             -------------CeEEEEEccCCC-ccceeecccccCCceEEEEecCCCceEEeeecCC------cEEEEeCCC-CCCC
Q psy2305         224 -------------CEIICWDLRNPG-CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG------DLSIWNVNT-SNLP  282 (334)
Q Consensus       224 -------------~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg------~i~iwd~~~-~~~~  282 (334)
                                   ..+..||..+.. ..+..+.......   +++ .-++++.+.|+.++      .+..||..+ .+  
T Consensus       419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~---~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--  492 (557)
T PHA02713        419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP---GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--  492 (557)
T ss_pred             cccccccccccccceEEEECCCCCeEeecCCCCcccccC---cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCC--
Confidence                         246677776521 1111111110111   111 23567777776542      356788776 32  


Q ss_pred             CCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecce
Q psy2305         283 SSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQI  329 (334)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~  329 (334)
                              |..+..+.........+.+    ++    ++.++||.|+
T Consensus       493 --------W~~~~~m~~~r~~~~~~~~----~~----~iyv~Gg~~~  523 (557)
T PHA02713        493 --------WELITTTESRLSALHTILH----DN----TIMMLHCYES  523 (557)
T ss_pred             --------eeEccccCcccccceeEEE----CC----EEEEEeeecc
Confidence                    3555555544444444555    78    8889999887

>PRK10115 protease 2; Provisional

Probab=96.94  E-value=0.34  Score=45.15  Aligned_cols=239  Identities=10%  Similarity=-0.009  Sum_probs=117.9

Q ss_pred             eeEEEEcCCCcEEEEeeC-----CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc
Q psy2305           4 EEDVDEAPDGTCLLTNSN-----DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      +..+.+||||++|+.+..     ...|++.|+.++....             ..+..   .. ..++|       ++|++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-------------~~i~~---~~-~~~~w-------~~D~~  184 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP-------------ELLDN---VE-PSFVW-------ANDSW  184 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC-------------ccccC---cc-eEEEE-------eeCCC
Confidence            567889999998887532     2468888998776320             11111   11 33555       66887


Q ss_pred             EEEEeeCC------CcEEEEeCCCC--eeeEEEcCcccccccccee-EEEEcCCCCEEEEe--e--CCcEEEEEcCCCCC
Q psy2305          79 YFLCSSMY------APIHLWDSVGG--EIKATYRPYNQVDEVTHAY-SLAFSLDGNKIYAG--F--LSEVKIFSTDRPGR  145 (334)
Q Consensus        79 ~l~~~~~d------~~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~--~--d~~i~i~d~~~~~~  145 (334)
                      .|+....+      ..|..+++.++  +....+.....     ... ....+.++++++..  +  ++.+.+++......
T Consensus       185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~-----~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~  259 (686)
T PRK10115        185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDD-----TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA  259 (686)
T ss_pred             EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCC-----CEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC
Confidence            66665432      35777888877  33334443222     222 33445588876633  2  57899998643211


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeec---CCeEEEEECCCCCceEeeccC-C-CCeEEEEEccCCcEEEeee
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY---SKIIGLFSDSDGRPLFFLKGH-N-GGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~~~~  220 (334)
                      ....   ...........+. +..+. +++....   ...|...++.+......+..+ . ..+..+.+.. +.++++..
T Consensus       260 ~~~~---~~~~~~~~~~~~~-~~~~~-ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~  333 (686)
T PRK10115        260 EPFV---FLPRRKDHEYSLD-HYQHR-FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEER  333 (686)
T ss_pred             CceE---EEECCCCCEEEEE-eCCCE-EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEE
Confidence            1111   1111112222222 33333 3333322   234555555422222333334 3 3677888873 34445555


Q ss_pred             cCCCeEEEEEccCCCccceeecccccCCceEEEEec--CCCc-eEEeeec---CCcEEEEeCCCC
Q psy2305         221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLT--SCSN-YLLSGNT---NGDLSIWNVNTS  279 (334)
Q Consensus       221 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~-~l~~~~~---dg~i~iwd~~~~  279 (334)
                       .++.-+++-+...+.....+... ....+..+.++  +++. ++++.+.   -+.+..+|+.++
T Consensus       334 -~~g~~~l~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        334 -QRGLTSLRQINRKTREVIGIAFD-DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             -eCCEEEEEEEcCCCCceEEecCC-CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence             67776666554323333333311 11122223334  3433 4443332   467888888765

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.86  E-value=0.14  Score=46.83  Aligned_cols=151  Identities=11%  Similarity=0.206  Sum_probs=88.9

Q ss_pred             CCEEEEeeCCcEEEEEcCCCCCeeeee---cc--------------cccccccceEEEEEcCC-CCcEEEEeecCCeEEE
Q psy2305         124 GNKIYAGFLSEVKIFSTDRPGRECVSR---NL--------------KPWFRKNIVSAIAINPV-HPDICALGTYSKIIGL  185 (334)
Q Consensus       124 ~~~l~~~~d~~i~i~d~~~~~~~~~~~---~~--------------~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i  185 (334)
                      ..+|+.+..+.|.||+++.........   .+              ........|+-|....= +...|+.+.+||.|.+
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~  128 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA  128 (717)
T ss_pred             CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence            667777778888888876422211100   00              00001122444433221 2238888999999999


Q ss_pred             EECCC-------C-------------CceEeeccCCCCeEEEEEc--cCCcEEEeeecCCCeEEEEEccCCCccceeecc
Q psy2305         186 FSDSD-------G-------------RPLFFLKGHNGGITHLEFS--SNGILLFSGARKDCEIICWDLRNPGCILHTFPR  243 (334)
Q Consensus       186 ~d~~~-------~-------------~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~  243 (334)
                      |.+++       .             ++...+. ....+++++++  ...++||+++ ....|.||-+............
T Consensus       129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSs-Ns~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSS-NSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEec-CCceEEEEEEeccccccccccc
Confidence            97621       0             0112222 34578899998  7788898888 7888888877652111111112


Q ss_pred             cccCCceEEEEecCCC-----c-eEEeeecCCcEEEEeC
Q psy2305         244 QVSTNQRVYFDLTSCS-----N-YLLSGNTNGDLSIWNV  276 (334)
Q Consensus       244 ~~~~~~~~~~~~s~~~-----~-~l~~~~~dg~i~iwd~  276 (334)
                      +.....+-+++|-++.     . +|++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            2345566667775533     2 7788888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.80  E-value=0.2  Score=40.32  Aligned_cols=148  Identities=11%  Similarity=0.032  Sum_probs=83.4

Q ss_pred             cceecCCCcEEEEee--C-CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEE-cCCCC
Q psy2305          70 TSSIDGFTSYFLCSS--M-YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFS-TDRPG  144 (334)
Q Consensus        70 ~~~~s~~~~~l~~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d-~~~~~  144 (334)
                      ..+++++++.++...  . ...+.++..  +........ ..     .+..-.|++++...+... +...+++. ... +
T Consensus        28 s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~-g~-----~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~-g   98 (253)
T PF10647_consen   28 SPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLT-GG-----SLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS-G   98 (253)
T ss_pred             ceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeecc-CC-----ccccccccCCCCEEEEEcCCCceEEEEecCC-C
Confidence            345588998877665  2 234555543  333222211 12     567889999987777665 55555553 222 2


Q ss_pred             CeeeeecccccccccceEEEEEcCCCCcEEEEee---cCCeEEEEECC---CC------CceEeeccCCCCeEEEEEccC
Q psy2305         145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGT---YSKIIGLFSDS---DG------RPLFFLKGHNGGITHLEFSSN  212 (334)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~------~~~~~~~~~~~~i~~~~~~~~  212 (334)
                      ..... .+........|+.+.++|||. .++...   .++.|.+--+.   .+      ............+..+.|.++
T Consensus        99 ~~~~~-~v~~~~~~~~I~~l~vSpDG~-RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~  176 (253)
T PF10647_consen   99 TGEPV-EVDWPGLRGRITALRVSPDGT-RVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD  176 (253)
T ss_pred             cceeE-EecccccCCceEEEEECCCCc-EEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence            21111 001222222899999999999 555443   35677776552   22      112222233567899999999


Q ss_pred             CcEEEeeecCCCeEEE
Q psy2305         213 GILLFSGARKDCEIIC  228 (334)
Q Consensus       213 ~~~l~~~~~~d~~i~i  228 (334)
                      +.+++.+...++.+..
T Consensus       177 ~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  177 STLVVLGRSAGGPVVR  192 (253)
T ss_pred             CEEEEEeCCCCCceeE
Confidence            9887776634443443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.77  E-value=0.12  Score=44.17  Aligned_cols=147  Identities=12%  Similarity=0.042  Sum_probs=78.3

Q ss_pred             cceEEEEEcCCCCcEEEEee-----------cCC-eEEEEECCC--CCc--eEeeccCCCCeEEEEEccCCcEEEeeecC
Q psy2305         159 NIVSAIAINPVHPDICALGT-----------YSK-IIGLFSDSD--GRP--LFFLKGHNGGITHLEFSSNGILLFSGARK  222 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~-----------~dg-~i~i~d~~~--~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  222 (334)
                      .....|+|.++|+ ++++-.           ..+ .|.+++-.+  ++.  ...+.........+++.++|  |+++. .
T Consensus        14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~   89 (367)
T TIGR02604        14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-P   89 (367)
T ss_pred             CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC-C
Confidence            3456889999998 665532           223 777776543  332  23343333456789999998  44444 3


Q ss_pred             CCeEEEEEccCCC----cc---ceeecccc--cCCceEEEEecCCCceEEeeecC-------------------CcEEEE
Q psy2305         223 DCEIICWDLRNPG----CI---LHTFPRQV--STNQRVYFDLTSCSNYLLSGNTN-------------------GDLSIW  274 (334)
Q Consensus       223 d~~i~iwd~~~~~----~~---~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~d-------------------g~i~iw  274 (334)
                      ....++.|....+    +.   +..+....  .......+.|.|||.+.++-+..                   |.|.-+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            4433344553211    11   11121110  12335568899999877655421                   334444


Q ss_pred             eCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecc
Q psy2305         275 NVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQ  328 (334)
Q Consensus       275 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d  328 (334)
                      +...+             .+..+.........++|  +|++    +++++-..+
T Consensus       170 ~pdg~-------------~~e~~a~G~rnp~Gl~~--d~~G----~l~~tdn~~  204 (367)
T TIGR02604       170 NPDGG-------------KLRVVAHGFQNPYGHSV--DSWG----DVFFCDNDD  204 (367)
T ss_pred             ecCCC-------------eEEEEecCcCCCccceE--CCCC----CEEEEccCC
Confidence            44433             12222222234678999  9999    887765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.74  E-value=0.32  Score=41.93  Aligned_cols=152  Identities=9%  Similarity=-0.026  Sum_probs=85.4

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW   92 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw   92 (334)
                      ...+++|+..|.++||+........           ....++..-..+|..+.....  .-..+...||+ -.-..+.+|
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~-----------~~lllE~~l~~PILqv~~G~F--~s~~~~~~LaV-LhP~kl~vY  102 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQP-----------EDLLLETQLKDPILQVECGKF--VSGSEDLQLAV-LHPRKLSVY  102 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCC-----------ccEEEEEecCCcEEEEEeccc--cCCCCcceEEE-ecCCEEEEE
Confidence            3589999999999999986544320           113455555678888876431  00123334444 345667777


Q ss_pred             eCCC--Ce-------eeEEEcCccccccccceeEEEEcC----CCC-EEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          93 DSVG--GE-------IKATYRPYNQVDEVTHAYSLAFSL----DGN-KIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        93 d~~~--~~-------~~~~~~~~~~~~~~~~v~~~~~~~----~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      .+..  |.       .+..+..|.-..   ....++.-|    .++ ++.+-+ ||.+.+|+-+.  .....   .+.. 
T Consensus       103 ~v~~~~g~~~~g~~~~L~~~yeh~l~~---~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~--~~f~~---~lp~-  173 (418)
T PF14727_consen  103 SVSLVDGTVEHGNQYQLELIYEHSLQR---TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES--FAFSR---FLPD-  173 (418)
T ss_pred             EEEecCCCcccCcEEEEEEEEEEeccc---ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc--EEEEE---EcCC-
Confidence            6621  11       112222211111   334444433    223 444556 99999999774  22221   1111 


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEEC
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSD  188 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~  188 (334)
                      ---...+.|.+.-+ .|++++.+..+..|..
T Consensus       174 ~llPgPl~Y~~~tD-sfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  174 FLLPGPLCYCPRTD-SFVTASSSWTLECYKY  203 (418)
T ss_pred             CCCCcCeEEeecCC-EEEEecCceeEEEecH
Confidence            22233567888887 8999998899999876

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.68  E-value=0.12  Score=46.60  Aligned_cols=112  Identities=13%  Similarity=0.141  Sum_probs=70.2

Q ss_pred             ceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEE--cCCCCcEEEEeecCCeEEEEECC-
Q psy2305         114 HAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAI--NPVHPDICALGTYSKIIGLFSDS-  189 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~i~d~~-  189 (334)
                      .+.-+.-+.-++..++.+ ...+.|||.+. +.....   ......+.|.++.|  .|+++ .+++.+..+.|.+|--. 
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~-~~lE~~---~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R  105 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRS-GVLEYE---ESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLR  105 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCC-cEEEEe---eeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccc
Confidence            334444555555444544 67899999986 332222   22245778999998  57788 66667788888888541 


Q ss_pred             ----C----CCceEee--ccCC-CCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         190 ----D----GRPLFFL--KGHN-GGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       190 ----~----~~~~~~~--~~~~-~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                          +    ..+++.+  ..+. .+|.+..|.++|..++ |+  ++.+.|+|-.-
T Consensus       106 ~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~s--GNqlfv~dk~~  157 (631)
T PF12234_consen  106 YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GS--GNQLFVFDKWL  157 (631)
T ss_pred             hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-Ee--CCEEEEECCCc
Confidence                1    1223332  2233 5788999999996554 44  56788887543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG3630|consensus

Probab=96.66  E-value=0.043  Score=51.71  Aligned_cols=140  Identities=8%  Similarity=-0.088  Sum_probs=86.0

Q ss_pred             cCCCcEEEE--eeCCCcEEEEeCCCCeeeE-----EEcCcc-ccccccceeEEEEcCCCCEE--EEeeCCcEEEEEcCCC
Q psy2305          74 DGFTSYFLC--SSMYAPIHLWDSVGGEIKA-----TYRPYN-QVDEVTHAYSLAFSLDGNKI--YAGFLSEVKIFSTDRP  143 (334)
Q Consensus        74 s~~~~~l~~--~~~d~~i~iwd~~~~~~~~-----~~~~~~-~~~~~~~v~~~~~~~~~~~l--~~~~d~~i~i~d~~~~  143 (334)
                      .+|+...++  .+.+-.|..||+++-..-.     .+..+. ..+......++.|+|.=...  ++-.|+.|++..+...
T Consensus       109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~  188 (1405)
T KOG3630|consen  109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL  188 (1405)
T ss_pred             ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence            456554333  3344478889987533211     111111 11222256788899864333  3334899998887753


Q ss_pred             CCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc----CCCCeEEEEEccCCcEEEee
Q psy2305         144 GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG----HNGGITHLEFSSNGILLFSG  219 (334)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~  219 (334)
                      ...+.     ........++++|+|.|+ .+++|-..|++.-|.. +.+....+.+    ....|.++.|-....++++-
T Consensus       189 ~~~v~-----s~p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  189 AQNVT-----SFPVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             hhhhc-----ccCcccceeeEEeccccc-eeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            33222     123456789999999999 9999999999999985 3433333322    13678999998777777664


Q ss_pred             e
Q psy2305         220 A  220 (334)
Q Consensus       220 ~  220 (334)
                      +
T Consensus       262 ~  262 (1405)
T KOG3630|consen  262 G  262 (1405)
T ss_pred             c
Confidence            4

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.66  E-value=0.26  Score=39.69  Aligned_cols=149  Identities=15%  Similarity=0.079  Sum_probs=85.2

Q ss_pred             ceeEEEEcCCCcEEEEee---CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           3 IEEDVDEAPDGTCLLTNS---NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~---~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      .+.+.+++++|+.+|...   ....++++........               .+   ....+....|       ++++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~---------------~~---~g~~l~~PS~-------d~~g~~   79 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP---------------VL---TGGSLTRPSW-------DPDGWV   79 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee---------------ec---cCCccccccc-------cCCCCE
Confidence            467889999999776655   3345555554333221               11   2234555455       778877


Q ss_pred             EEEeeCCCcEEEEe-CCCCeee-EEEcCccccccccceeEEEEcCCCCEEEEee----CCcEEEEEcCCCCCe---eeee
Q psy2305          80 FLCSSMYAPIHLWD-SVGGEIK-ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----LSEVKIFSTDRPGRE---CVSR  150 (334)
Q Consensus        80 l~~~~~d~~i~iwd-~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~---~~~~  150 (334)
                      .+....+...+++. ..+++.. ..+.......   .|..+.+||||..++.-.    ++.|.+--+.....-   ....
T Consensus        80 W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~---~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~  156 (253)
T PF10647_consen   80 WTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRG---RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG  156 (253)
T ss_pred             EEEEcCCCceEEEEecCCCcceeEEecccccCC---ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence            77766666666663 3333322 2222211111   699999999999888432    677777665532222   1111


Q ss_pred             cc-cccccccceEEEEEcCCCCcEEEEeecC
Q psy2305         151 NL-KPWFRKNIVSAIAINPVHPDICALGTYS  180 (334)
Q Consensus       151 ~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (334)
                      +. ........+..+.|.+++. +++.+...
T Consensus       157 ~~~~~~~~~~~v~~v~W~~~~~-L~V~~~~~  186 (253)
T PF10647_consen  157 PRRVAPPLLSDVTDVAWSDDST-LVVLGRSA  186 (253)
T ss_pred             ceEecccccCcceeeeecCCCE-EEEEeCCC
Confidence            11 1123346789999999998 66655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.64  E-value=0.25  Score=39.28  Aligned_cols=196  Identities=10%  Similarity=0.069  Sum_probs=117.4

Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeee
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~  150 (334)
                      ++-+|||..-+++...+.|--.|..+|+....--....     ....+..-|||..-++-....|.-.|-++  -.....
T Consensus        67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga-----~Phgiv~gpdg~~Witd~~~aI~R~dpkt--~evt~f  139 (353)
T COG4257          67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGA-----SPHGIVVGPDGSAWITDTGLAIGRLDPKT--LEVTRF  139 (353)
T ss_pred             cccCCCCceEEecCccccceecCCCCCceEEEecCCCC-----CCceEEECCCCCeeEecCcceeEEecCcc--cceEEe
Confidence            45588998888888888888889999887554333232     45688888998877765433455555543  223333


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc-CCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG-HNGGITHLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                      ++....-........|.+.|. +-.++. .|.---.|-. ...+..+.. ....-+.|+-.|+|..-++.- .+..|-..
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyasl-agnaiari  215 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASL-AGNAIARI  215 (353)
T ss_pred             ecccccCCCcccceeeCCCcc-EEEeec-cccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEec-cccceEEc
Confidence            333334456677889999998 666654 2221111211 122333322 123456788999999877766 67788877


Q ss_pred             EccCCCccceeeccccc-CCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         230 DLRNPGCILHTFPRQVS-TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       230 d~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      |... +. ...+..... ......+--+|.|+.-++-...+.+..+|....
T Consensus       216 dp~~-~~-aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~  264 (353)
T COG4257         216 DPFA-GH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT  264 (353)
T ss_pred             cccc-CC-cceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence            7765 32 222221111 112223334678888888777788888877664

>PRK13684 Ycf48-like protein; Provisional

Probab=96.61  E-value=0.35  Score=40.71  Aligned_cols=146  Identities=12%  Similarity=0.017  Sum_probs=80.0

Q ss_pred             cCCCcEEEEeeCCCcEEE-EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecc
Q psy2305          74 DGFTSYFLCSSMYAPIHL-WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      .|++.+++++. .|.+.. ++ ..++.-.......    ...++.+.+.++++.++++..|.+.+=..+. +........
T Consensus       181 ~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~----~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~-G~sW~~~~~  253 (334)
T PRK13684        181 SPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNS----SRRLQSMGFQPDGNLWMLARGGQIRFNDPDD-LESWSKPII  253 (334)
T ss_pred             CCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCC----cccceeeeEcCCCCEEEEecCCEEEEccCCC-CCccccccC
Confidence            66776666554 554432 22 1222222222111    1178999999999988888777665322222 333221100


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec---cCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK---GHNGGITHLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                      ........+..+.+.|++. .+++ +.+|.+.. ....++.-....   .-....+.+.|..+++.+++|.  .|.|-.|
T Consensus       254 ~~~~~~~~l~~v~~~~~~~-~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~--~G~il~~  328 (334)
T PRK13684        254 PEITNGYGYLDLAYRTPGE-IWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ--RGVLLRY  328 (334)
T ss_pred             CccccccceeeEEEcCCCC-EEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC--CceEEEe
Confidence            0011224578899999887 5554 45675553 334444333332   2223577888887777777664  8888777


Q ss_pred             Ec
Q psy2305         230 DL  231 (334)
Q Consensus       230 d~  231 (334)
                      +-
T Consensus       329 ~~  330 (334)
T PRK13684        329 VG  330 (334)
T ss_pred             cC
Confidence            54

>PHA03098 kelch-like protein; Provisional

Probab=96.60  E-value=0.42  Score=43.33  Aligned_cols=186  Identities=9%  Similarity=0.040  Sum_probs=86.4

Q ss_pred             CCcEEEEeeCCC------cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEcCCC
Q psy2305          76 FTSYFLCSSMYA------PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFSTDRP  143 (334)
Q Consensus        76 ~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~  143 (334)
                      ++.+++.|+.++      .+..||..+++....-......    .-.+++ .-+++.++.|+ +     ..+..||..+.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R----~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPR----KNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccc----ccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence            566777776542      5778888777653321111110    111222 22456666664 3     35777887752


Q ss_pred             CCeeeeecccccccccceEEEEEcCCCCcEEEEeecC------CeEEEEECCCCCc--eEeeccCCCCeEEEEEccCCcE
Q psy2305         144 GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS------KIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNGIL  215 (334)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~  215 (334)
                      .  ....+ .+...... .+++. -++. +++.|+.+      ..+..||..+++-  +..+...... .++. ..+++.
T Consensus       369 ~--W~~~~-~lp~~r~~-~~~~~-~~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~-~~~~~i  440 (534)
T PHA03098        369 K--WREEP-PLIFPRYN-PCVVN-VNNL-IYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAI-YHDGKI  440 (534)
T ss_pred             c--eeeCC-CcCcCCcc-ceEEE-ECCE-EEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEE-EECCEE
Confidence            1  11110 11111111 12222 2455 77777632      4588899876432  1112111111 1222 235666


Q ss_pred             EEeeecCC--------CeEEEEEccCCCccceeeccccc-CCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305         216 LFSGARKD--------CEIICWDLRNPGCILHTFPRQVS-TNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS  279 (334)
Q Consensus       216 l~~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  279 (334)
                      ++.|+ .+        ..+.+||..+ .+- ..+..... ......+.  -++++++.|+.+     ..+.+||..+.
T Consensus       441 yv~GG-~~~~~~~~~~~~v~~yd~~~-~~W-~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        441 YVIGG-ISYIDNIKVYNIVESYNPVT-NKW-TELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             EEECC-ccCCCCCcccceEEEecCCC-Cce-eeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            66665 32        2378888875 221 11111100 11111122  267777777654     46888888875

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.56  E-value=0.34  Score=39.87  Aligned_cols=190  Identities=11%  Similarity=0.055  Sum_probs=90.5

Q ss_pred             eEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE
Q psy2305         116 YSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF  195 (334)
Q Consensus       116 ~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  195 (334)
                      ..+....++..++++..|.  ||.....++.-..   ........+..+.-+++|+ +++++.......-||--...-..
T Consensus       107 ~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~---~~~~~~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w~~  180 (302)
T PF14870_consen  107 FGITALGDGSAELAGDRGA--IYRTTDGGKTWQA---VVSETSGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTWQP  180 (302)
T ss_dssp             EEEEEEETTEEEEEETT----EEEESSTTSSEEE---EE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EE
T ss_pred             eEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeE---cccCCcceeEeEEECCCCc-EEEEECcccEEEEecCCCccceE
Confidence            3444444554444444454  4444444555443   2344557788999999998 88877655556677743211111


Q ss_pred             eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee--ecccccCCceEEEEecCCCceEEeeecCCcEEE
Q psy2305         196 FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT--FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSI  273 (334)
Q Consensus       196 ~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i  273 (334)
                      .-..-...|..|.|.|++...+.+  ..|.|++=+..........  .........+..++|.+++...++|+ .|.+ +
T Consensus       181 ~~r~~~~riq~~gf~~~~~lw~~~--~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~  256 (302)
T PF14870_consen  181 HNRNSSRRIQSMGFSPDGNLWMLA--RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-L  256 (302)
T ss_dssp             EE--SSS-EEEEEE-TTS-EEEEE--TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-E
T ss_pred             EccCccceehhceecCCCCEEEEe--CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-E
Confidence            112245789999999998766644  4888888872211111111  11112244578899999888887665 4533 3


Q ss_pred             EeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceee
Q psy2305         274 WNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       274 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i  331 (334)
                      .....++.         |+.......-...++.+.|  .+..    + -..-+.||.+
T Consensus       257 ~S~DgGkt---------W~~~~~~~~~~~n~~~i~f--~~~~----~-gf~lG~~G~l  298 (302)
T PF14870_consen  257 VSTDGGKT---------WQKDRVGENVPSNLYRIVF--VNPD----K-GFVLGQDGVL  298 (302)
T ss_dssp             EESSTTSS----------EE-GGGTTSSS---EEEE--EETT----E-EEEE-STTEE
T ss_pred             EeCCCCcc---------ceECccccCCCCceEEEEE--cCCC----c-eEEECCCcEE
Confidence            44555521         1222222233446788888  5444    3 3444555554

>KOG2444|consensus

Probab=96.52  E-value=0.015  Score=44.48  Aligned_cols=105  Identities=10%  Similarity=-0.068  Sum_probs=61.8

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW   92 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw   92 (334)
                      +..|++|+.+|.|.+|++.......             ....... ..|.++      +....++.+..+++.||.|+.|
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~-------------d~~~s~~-e~i~~~------Ip~~~~~~~~c~~~~dg~ir~~  129 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHS-------------DRVCSGE-ESIDLG------IPNGRDSSLGCVGAQDGRIRAC  129 (238)
T ss_pred             CceEEeecccceEEEecCCccchHH-------------Hhhhccc-ccceec------cccccccceeEEeccCCceeee
Confidence            4568889999999999987322110             0111111 112111      1123356678889999999999


Q ss_pred             eCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe--e-CCcEEEEEcC
Q psy2305          93 DSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG--F-LSEVKIFSTD  141 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~-d~~i~i~d~~  141 (334)
                      +++.++.+.....|...    ++..+..+..++.++.+  + +..++.|++.
T Consensus       130 n~~p~k~~g~~g~h~~~----~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  130 NIKPNKVLGYVGQHNFE----SGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             ccccCceeeeeccccCC----CcceeEEecCCceEEeeccccchhhhhcchh
Confidence            99888777665543311    34444444455555544  3 6667777765

>KOG2247|consensus

Probab=96.43  E-value=0.00041  Score=58.51  Aligned_cols=145  Identities=18%  Similarity=0.195  Sum_probs=100.6

Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      .....|-|.+. -++.++.+-.+..||- .++.+-... ..+....++|..++..++......+.+.+||+.+.......
T Consensus        37 pi~~~w~~e~~-nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   37 PIIHRWRPEGH-NLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             cceeeEecCCC-ceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            34567888888 5777888889999994 444444333 34555678888888766554436889999999863332222


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV  320 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~  320 (334)
                      +.+. +....  +.|++.+..++.+...|.+.|++..+.            +.+.....|...+..++|  .+.+     
T Consensus       114 ~gg~-~s~sl--l~wsKg~~el~ig~~~gn~viynhgts------------R~iiv~Gkh~RRgtq~av--~lEd-----  171 (615)
T KOG2247|consen  114 SGGT-SSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTS------------RRIIVMGKHQRRGTQIAV--TLED-----  171 (615)
T ss_pred             ccCc-chHHH--HhhccCCccccccccccceEEEeccch------------hhhhhhcccccceeEEEe--cccc-----
Confidence            2222 11112  568999999999999999999998886            444455558888999999  8877     


Q ss_pred             eEEeeeccee
Q psy2305         321 ADATCSGQIT  330 (334)
Q Consensus       321 ~l~t~~~d~~  330 (334)
                      +.+.++.|..
T Consensus       172 ~vil~dcd~~  181 (615)
T KOG2247|consen  172 YVILCDCDNT  181 (615)
T ss_pred             eeeecCcHHH
Confidence            4566666544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.41  E-value=0.87  Score=42.84  Aligned_cols=203  Identities=12%  Similarity=0.096  Sum_probs=110.6

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccc---cceeEEEEcC----------------CCCEEEEee-CCcEE
Q psy2305          77 TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEV---THAYSLAFSL----------------DGNKIYAGF-LSEVK  136 (334)
Q Consensus        77 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~----------------~~~~l~~~~-d~~i~  136 (334)
                      +..|..++.++.|.-.|.++|+.+..+.........   .....+++..                .+..++.+. |+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            446777777888999999999998887654321100   0122333321                233566665 99999


Q ss_pred             EEEcCCCCCeeeeecc----ccc----ccccceEEEEEcC--CCCcEEEEeec----------CCeEEEEECCCCCceEe
Q psy2305         137 IFSTDRPGRECVSRNL----KPW----FRKNIVSAIAINP--VHPDICALGTY----------SKIIGLFSDSDGRPLFF  196 (334)
Q Consensus       137 i~d~~~~~~~~~~~~~----~~~----~~~~~v~~~~~~~--~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~  196 (334)
                      -.|.++ ++.+.....    .+.    .....-..+.-.|  .+. .+++|+.          +|.|+-+|.++|+.+-.
T Consensus       274 ALDA~T-Gk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       274 ALDADT-GKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEECCC-CCEEEEecCCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            999887 666643110    000    0000000111111  022 5666642          68899999999998776


Q ss_pred             eccC---------CCC--------e-EEEEEccCCcEEEeeec-----------------CCCeEEEEEccCCCccceee
Q psy2305         197 LKGH---------NGG--------I-THLEFSSNGILLFSGAR-----------------KDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       197 ~~~~---------~~~--------i-~~~~~~~~~~~l~~~~~-----------------~d~~i~iwd~~~~~~~~~~~  241 (334)
                      +..-         .+.        + ..+++.|....++....                 ..+.|.-.|.++ ++....+
T Consensus       352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~T-Gk~~W~~  430 (764)
T TIGR03074       352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATT-GKERWVF  430 (764)
T ss_pred             EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCC-CceEEEe
Confidence            6311         011        1 23445554444443220                 124466667766 6665555


Q ss_pred             cccccCCc-------eEEEEecC-CCc---eEEeeecCCcEEEEeCCCCCCC
Q psy2305         242 PRQVSTNQ-------RVYFDLTS-CSN---YLLSGNTNGDLSIWNVNTSNLP  282 (334)
Q Consensus       242 ~~~~~~~~-------~~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~  282 (334)
                      +...++..       ..-+.+.. +|+   .++.++.+|.++++|.++++.+
T Consensus       431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI  482 (764)
T ss_pred             cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence            43222211       11122322 553   7889999999999999998755

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4499|consensus

Probab=96.28  E-value=0.37  Score=37.36  Aligned_cols=138  Identities=14%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC--------CCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN--------GGITHLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                      +.+.+.-..+|+|+ +++ |.....=..+....+....-+.+|.        +--..++|+.+.+.++.....+-+|.-|
T Consensus       108 knR~NDgkvdP~Gr-yy~-GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGR-YYG-GTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCc-eee-eeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            45666778899998 533 4322111122222222222222222        2234688988887766554356777778


Q ss_pred             EccCC-Cc-----cceeecccc--cCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccc
Q psy2305         230 DLRNP-GC-----ILHTFPRQV--STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ  301 (334)
Q Consensus       230 d~~~~-~~-----~~~~~~~~~--~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (334)
                      |..-+ +.     .+..+....  .....-.++...+|++.++.-..++|...|..++            +.+.++.-..
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG------------K~L~eiklPt  253 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG------------KILLEIKLPT  253 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC------------cEEEEEEcCC
Confidence            84321 21     222222210  0111112445667888888888899999999999            6777777778


Q ss_pred             cccceeee
Q psy2305         302 DCTNGVRW  309 (334)
Q Consensus       302 ~~i~~~~~  309 (334)
                      ..|++++|
T Consensus       254 ~qitsccF  261 (310)
T KOG4499|consen  254 PQITSCCF  261 (310)
T ss_pred             CceEEEEe
Confidence            88999999

>PRK10115 protease 2; Provisional

Probab=96.11  E-value=1.2  Score=41.63  Aligned_cols=191  Identities=10%  Similarity=0.054  Sum_probs=93.0

Q ss_pred             ceecCCCcEEEEeeCC-----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-C-----CcEEEE
Q psy2305          71 SSIDGFTSYFLCSSMY-----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-L-----SEVKIF  138 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d-----~~i~i~  138 (334)
                      +.+|||+++|+.+...     ..|++.|+.+|..+...-  ..     .-..++|.+|++.|+.. . +     ..|..+
T Consensus       132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~-----~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DN-----VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cC-----cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            4458899988876332     368888998875432111  11     11469999999877644 2 2     357777


Q ss_pred             EcCCCCCeeeeecccccccccceE-EEEEcCCCCcEEEEeec---CCeEEEEECC--CCCceEeeccCCCCeEEEEEccC
Q psy2305         139 STDRPGRECVSRNLKPWFRKNIVS-AIAINPVHPDICALGTY---SKIIGLFSDS--DGRPLFFLKGHNGGITHLEFSSN  212 (334)
Q Consensus       139 d~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~---dg~i~i~d~~--~~~~~~~~~~~~~~i~~~~~~~~  212 (334)
                      ++.++...-..   .+........ .+..+.+++ +++..+.   ++.+.+++..  +++....+....+....+. +..
T Consensus       205 ~lgt~~~~d~l---v~~e~~~~~~~~~~~s~d~~-~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  279 (686)
T PRK10115        205 TIGTPASQDEL---VYEEKDDTFYVSLHKTTSKH-YVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ  279 (686)
T ss_pred             ECCCChhHCeE---EEeeCCCCEEEEEEEcCCCC-EEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC
Confidence            88763211111   1222222222 333454777 5544433   3578888853  3433222322223333332 323


Q ss_pred             CcEEEeeecC-CCeEEEE--EccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305         213 GILLFSGARK-DCEIICW--DLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       213 ~~~l~~~~~~-d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  276 (334)
                      + .|+..+.. ....+|.  ++...+. ...+..+.....+..+.+. .+.++++...+|.-+++-+
T Consensus       280 ~-~ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        280 H-RFYLRSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             C-EEEEEEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence            3 33333312 2233444  4432122 2333333223355566666 3355556666765555433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.09  E-value=0.81  Score=39.44  Aligned_cols=115  Identities=8%  Similarity=-0.015  Sum_probs=65.0

Q ss_pred             ceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeee--EEEcCccccccccceeEEEEcCCCCEEEEeeCCcE
Q psy2305          58 GGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK--ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEV  135 (334)
Q Consensus        58 ~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i  135 (334)
                      ...+..+.+       .+++.+++++ ..|.+. +....++.-  ..+...........+..+.|.+++..+++|..|.+
T Consensus       280 ~~~l~~v~~-------~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v  350 (398)
T PLN00033        280 ARRIQNMGW-------RADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGIL  350 (398)
T ss_pred             ccceeeeeE-------cCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcE
Confidence            345666555       6688877665 456543 343444311  01221111101115889999999998888888877


Q ss_pred             EEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEE
Q psy2305         136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLF  186 (334)
Q Consensus       136 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  186 (334)
                      ....-.  ++.-...+ ....-....+.+.|.++++ .+++| .+|.|.-|
T Consensus       351 ~~s~D~--G~tW~~~~-~~~~~~~~ly~v~f~~~~~-g~~~G-~~G~il~~  396 (398)
T PLN00033        351 LRSTDG--GKSWKRDK-GADNIAANLYSVKFFDDKK-GFVLG-NDGVLLRY  396 (398)
T ss_pred             EEeCCC--CcceeEcc-ccCCCCcceeEEEEcCCCc-eEEEe-CCcEEEEe
Confidence            665432  44433211 1123345688999988776 56544 67776654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.09  E-value=0.03  Score=30.48  Aligned_cols=31  Identities=16%  Similarity=0.181  Sum_probs=26.4

Q ss_pred             CceeEEEEcCC-C--cEEEEeeCCCeEEEEECCC
Q psy2305           2 DIEEDVDEAPD-G--TCLLTNSNDNHLRTFDLPS   32 (334)
Q Consensus         2 d~V~~~~~sp~-~--~~l~~~~~d~~v~iw~~~~   32 (334)
                      .+|+++.|||+ +  .+|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            37899999984 4  5888888889999999985

It contains a characteristic DLL sequence motif.

>KOG2377|consensus

Probab=96.07  E-value=0.31  Score=41.61  Aligned_cols=136  Identities=11%  Similarity=0.011  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCC--ceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc-
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGR--PLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI-  237 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~-  237 (334)
                      +.+-|...++ .++ +...|.+.=|...-..  ..-++ ....++|.++.||+|.+.|++-- .+.+|.+++....... 
T Consensus        26 ngvFfDDaNk-qlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR-~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   26 NGVFFDDANK-QLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQR-TSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             cceeeccCcc-eEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEe-cCceEEEEecCCCchhh
Confidence            3444444343 332 3344555555543221  11122 22457999999999999999987 8999999998542211 


Q ss_pred             ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      ....+.......+..+.|+.. .-+|.....| +.+|.+...+           +.+...+.|.-.|+-..|  .++-
T Consensus       103 ~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek-----------rslRlVks~~~nvnWy~y--c~et  165 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK-----------RSLRLVKSHNLNVNWYMY--CPET  165 (657)
T ss_pred             HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh-----------hhhhhhhhcccCccEEEE--cccc
Confidence            122222223455888989866 5666665555 7777766543           455666677778999999  8877

>PHA03098 kelch-like protein; Provisional

Probab=96.04  E-value=0.8  Score=41.52  Aligned_cols=144  Identities=12%  Similarity=0.062  Sum_probs=67.4

Q ss_pred             CCcEEEEeeCC-----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C------CcEEEEEcCCC
Q psy2305          76 FTSYFLCSSMY-----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L------SEVKIFSTDRP  143 (334)
Q Consensus        76 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d------~~i~i~d~~~~  143 (334)
                      ++++++.|+.+     ..+..||..+++....-......    .-.+++. -+++..+.|+ +      +.+..||+.+.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r----~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~  416 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR----YNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN  416 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC----ccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence            67777888765     34677888776543221111110    1112222 2455555554 1      45788888752


Q ss_pred             CCeeeeecccccccccceEEEEEcCCCCcEEEEeecC--------CeEEEEECCCCCce--EeeccCCCCeEEEEEccCC
Q psy2305         144 GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS--------KIIGLFSDSDGRPL--FFLKGHNGGITHLEFSSNG  213 (334)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~  213 (334)
                        ...... ......... +++ ..++. +++.|+.+        ..+.+||..+++-.  ..+.........+.+  ++
T Consensus       417 --~W~~~~-~~p~~r~~~-~~~-~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~  488 (534)
T PHA03098        417 --KWSKGS-PLPISHYGG-CAI-YHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NN  488 (534)
T ss_pred             --eeeecC-CCCccccCc-eEE-EECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CC
Confidence              111110 111111111 222 23455 66777643        23888998765322  112111111112222  56


Q ss_pred             cEEEeeecCC-----CeEEEEEccC
Q psy2305         214 ILLFSGARKD-----CEIICWDLRN  233 (334)
Q Consensus       214 ~~l~~~~~~d-----~~i~iwd~~~  233 (334)
                      +.++.|+ .+     ..+.+||..+
T Consensus       489 ~iyv~GG-~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        489 KIYVVGG-DKYEYYINEIEVYDDKT  512 (534)
T ss_pred             EEEEEcC-CcCCcccceeEEEeCCC
Confidence            6666666 33     4577777664

>KOG2377|consensus

Probab=96.04  E-value=0.21  Score=42.53  Aligned_cols=113  Identities=7%  Similarity=0.024  Sum_probs=76.8

Q ss_pred             eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305          51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG  130 (334)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (334)
                      ..+.....++|.++.|       |+|++.||+--.+.+|.+.+....+....+. +.+......|....|+.+ .-++.-
T Consensus        59 iSfdm~d~G~I~SIkF-------SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~-~~ck~k~~~IlGF~W~~s-~e~A~i  129 (657)
T KOG2377|consen   59 ISFDMDDKGEIKSIKF-------SLDNKILAVQRTSKTVDFCNFIPDNSQLEYT-QECKTKNANILGFCWTSS-TEIAFI  129 (657)
T ss_pred             ceeeecCCCceeEEEe-------ccCcceEEEEecCceEEEEecCCCchhhHHH-HHhccCcceeEEEEEecC-eeEEEE
Confidence            4555556678988887       7799999999999999999985444322211 112211226889999976 556655


Q ss_pred             eCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEe
Q psy2305         131 FLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALG  177 (334)
Q Consensus       131 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  177 (334)
                      .+.-+.+|.+....+.++    ..+.|+..|.-..|.++.+ .++.+
T Consensus       130 ~~~G~e~y~v~pekrslR----lVks~~~nvnWy~yc~et~-v~LL~  171 (657)
T KOG2377|consen  130 TDQGIEFYQVLPEKRSLR----LVKSHNLNVNWYMYCPETA-VILLS  171 (657)
T ss_pred             ecCCeEEEEEchhhhhhh----hhhhcccCccEEEEccccc-eEeee
Confidence            666677887765344444    4677888899999999987 44433

>KOG1898|consensus

Probab=95.92  E-value=1.6  Score=41.48  Aligned_cols=37  Identities=19%  Similarity=0.087  Sum_probs=28.2

Q ss_pred             eeEEEEcCCC------cEEEEeeCCCeEEEEECCCCCceeeee
Q psy2305           4 EEDVDEAPDG------TCLLTNSNDNHLRTFDLPSELHCKSVW   40 (334)
Q Consensus         4 V~~~~~sp~~------~~l~~~~~d~~v~iw~~~~~~~~~~~~   40 (334)
                      |.|+++.++.      ++++.++.|+.++++.+........+.
T Consensus       585 vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls  627 (1205)
T KOG1898|consen  585 VACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLS  627 (1205)
T ss_pred             ehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcc
Confidence            6678888764      479999999999999998665554443

>KOG2247|consensus

Probab=95.86  E-value=0.0017  Score=54.93  Aligned_cols=142  Identities=10%  Similarity=0.140  Sum_probs=96.9

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeec
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~  151 (334)
                      -+.+.-++.++.+..+..||- .++.........      ....++|..++..++.- . .+.+.+||+.+......   
T Consensus        43 ~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg------~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL---  112 (615)
T KOG2247|consen   43 RPEGHNLAVACANTIVIYYDK-AGQVILELNPTG------KALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL---  112 (615)
T ss_pred             ecCCCceehhhhhhHHHhhhh-hcceecccCCch------hHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH---
Confidence            445556888888888899984 454444333222      56688899888877643 3 79999999986222111   


Q ss_pred             cccc-ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         152 LKPW-FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       152 ~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                       ... .+....  +.|++... .++.+...|.+.+++..+.+.+..+-.|...+.++++.+.+..+ .++ .|..+.+-.
T Consensus       113 -E~gg~~s~sl--l~wsKg~~-el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi-l~d-cd~~L~v~~  186 (615)
T KOG2247|consen  113 -ESGGTSSKSL--LAWSKGTP-ELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI-LCD-CDNTLSVTT  186 (615)
T ss_pred             -hccCcchHHH--HhhccCCc-cccccccccceEEEeccchhhhhhhcccccceeEEEecccceee-ecC-cHHHHHHhh
Confidence             111 122222  78999998 88889999999999998877766665588999999999987544 444 465554443


Q ss_pred             c
Q psy2305         231 L  231 (334)
Q Consensus       231 ~  231 (334)
                      .
T Consensus       187 q  187 (615)
T KOG2247|consen  187 Q  187 (615)
T ss_pred             h
Confidence            3

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.84  E-value=0.93  Score=38.08  Aligned_cols=106  Identities=20%  Similarity=0.185  Sum_probs=60.8

Q ss_pred             ccceecCCCcEEEEeeCC------CcEEEEeCCCCeeeEEEcCcc----------ccccccceeEEEEcCCCCEEEEee-
Q psy2305          69 KTSSIDGFTSYFLCSSMY------APIHLWDSVGGEIKATYRPYN----------QVDEVTHAYSLAFSLDGNKIYAGF-  131 (334)
Q Consensus        69 ~~~~~s~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~-  131 (334)
                      ..+++.+++.++++.-.+      ..|..++.. |+....+....          ........-+|+++|+|+.|++.. 
T Consensus        88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            445666788888877667      778888865 66655542211          111223788999999999655421 


Q ss_pred             -----CC--c-------EEEEEcC--CCCCeeeeecccccc-----cccceEEEEEcCCCCcEEEE
Q psy2305         132 -----LS--E-------VKIFSTD--RPGRECVSRNLKPWF-----RKNIVSAIAINPVHPDICAL  176 (334)
Q Consensus       132 -----d~--~-------i~i~d~~--~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~  176 (334)
                           |+  .       ++++..+  +.+.........+..     ....+..+.+-++++ +++.
T Consensus       167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvL  231 (326)
T PF13449_consen  167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVL  231 (326)
T ss_pred             ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEE
Confidence                 22  1       4554444  322222221111221     356778888888887 5554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.83  E-value=0.79  Score=37.22  Aligned_cols=222  Identities=16%  Similarity=0.124  Sum_probs=117.3

Q ss_pred             eEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeee----eeceeEEEEEEecc-cceecCCC--
Q psy2305           5 EDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKI----KEGGIIYDYVWYPK-TSSIDGFT--   77 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~~s~~~--   77 (334)
                      +.|+|+|.+..-++....+...+||........       ....+.-.+..    ......+.+.|+.. ...++..+  
T Consensus        26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g-------~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~   98 (336)
T TIGR03118        26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPL-------VQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT   98 (336)
T ss_pred             ceeEecCCCCEEEecCCcceEEeecCCcccccC-------CccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence            679999999888888888999999987221100       00001111110    01123455555432 11222222  


Q ss_pred             --cEEEEeeCCCcEEEEeCCCCee-----eEEEcCccccccccceeEEEEcCC--CCEEEEee--CCcEEEEEcCCCCCe
Q psy2305          78 --SYFLCSSMYAPIHLWDSVGGEI-----KATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF--LSEVKIFSTDRPGRE  146 (334)
Q Consensus        78 --~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~--d~~i~i~d~~~~~~~  146 (334)
                        ..++.++.||+|.=|...-+..     ...+..  . ....--..+++-..  +.+|+.+.  .++|.+||-.-  ..
T Consensus        99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~--s-~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f--~~  173 (336)
T TIGR03118        99 GPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDA--S-QQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF--RP  173 (336)
T ss_pred             cceeEEEEeCCceEEeecCcCCcccccccEEEEcc--C-CCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc--cc
Confidence              2367788999999998533222     111211  1 00113345666543  67888775  89999998653  11


Q ss_pred             eeeecccc-----ccc-----------ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec--cCCCCeEEEE
Q psy2305         147 CVSRNLKP-----WFR-----------KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK--GHNGGITHLE  208 (334)
Q Consensus       147 ~~~~~~~~-----~~~-----------~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~  208 (334)
                      +.. +-.+     ...           .-.|+-..-.++.. -=+.|.--|.|-+||+ .++.++++.  +.-..-+.|+
T Consensus       174 ~~~-~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~-d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a  250 (336)
T TIGR03118       174 PPL-PGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRN-DEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLA  250 (336)
T ss_pred             ccC-CCCccCCCCCCCCCCcceEEECCeEEEEEEecCCccc-ccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceee
Confidence            110 0000     000           00011111122222 2222344578999996 578888773  2233456677


Q ss_pred             Ecc------CCcEEEeeecCCCeEEEEEccCCCccceeecc
Q psy2305         209 FSS------NGILLFSGARKDCEIICWDLRNPGCILHTFPR  243 (334)
Q Consensus       209 ~~~------~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~  243 (334)
                      ..|      .|.+|+--- .||+|..+|..+ ++.+-.+..
T Consensus       251 ~APa~FG~~sg~lLVGNF-GDG~InaFD~~s-G~~~g~L~~  289 (336)
T TIGR03118       251 IAPESFGSLSGALLVGNF-GDGTINAYDPQS-GAQLGQLLD  289 (336)
T ss_pred             eChhhhCCCCCCeEEeec-CCceeEEecCCC-CceeeeecC
Confidence            755      455666555 799999999987 665555543

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.83  E-value=0.067  Score=29.14  Aligned_cols=33  Identities=12%  Similarity=0.155  Sum_probs=26.9

Q ss_pred             cceEEEEEcCCCC--cEEEEeecCCeEEEEECCCC
Q psy2305         159 NIVSAIAINPVHP--DICALGTYSKIIGLFSDSDG  191 (334)
Q Consensus       159 ~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~  191 (334)
                      +.+.++.|+|+..  .+|+.+...|.|.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3588999997543  48998888999999999853

It contains a characteristic DLL sequence motif.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.80  E-value=1.3  Score=40.85  Aligned_cols=110  Identities=11%  Similarity=0.053  Sum_probs=68.0

Q ss_pred             CCcEEEEeeCCCcEEEEeCCC-------C----ee---eEEEcCccccccccceeEEEEc--CCCCEEEEee-CCcEEEE
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVG-------G----EI---KATYRPYNQVDEVTHAYSLAFS--LDGNKIYAGF-LSEVKIF  138 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~-------~----~~---~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~-d~~i~i~  138 (334)
                      +...|+.|..||.|.+|.+++       .    +.   ...++..-.......+++++++  ...++||+++ ...|.+|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            567899999999999996521       1    00   0001111111111278999998  7778888877 5677777


Q ss_pred             EcCCC-CCeeeeecccccccccceEEEEEcCCC--Cc---EEEEeecCCeEEEEEC
Q psy2305         139 STDRP-GRECVSRNLKPWFRKNIVSAIAINPVH--PD---ICALGTYSKIIGLFSD  188 (334)
Q Consensus       139 d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~---~l~~~~~dg~i~i~d~  188 (334)
                      -.... .+....   ....+...|-+|+|-++.  ..   .+++++-.|.+.+|++
T Consensus       193 af~l~~~r~~~~---~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHV---PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccc---cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            65531 111111   112356678899997765  11   6777888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.78  E-value=1.1  Score=38.61  Aligned_cols=92  Identities=14%  Similarity=0.094  Sum_probs=53.7

Q ss_pred             ceecCCCcEEEEeeCCCcEEE---EeCC-----CCeeeEEEcCccccccccceeEEEEc-----------CCCCEEEEee
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHL---WDSV-----GGEIKATYRPYNQVDEVTHAYSLAFS-----------LDGNKIYAGF  131 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~i---wd~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~l~~~~  131 (334)
                      ++.+|++++|+.+..+..+.+   |+..     .+.........-..+....|+++.+-           +|...+++|.
T Consensus         7 isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG~   86 (415)
T PF14655_consen    7 ISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVGT   86 (415)
T ss_pred             EEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEEe
Confidence            456889999999977765554   5431     12222222211111100145555443           3456778887


Q ss_pred             -CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcC
Q psy2305         132 -LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINP  168 (334)
Q Consensus       132 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  168 (334)
                       +|.|++|...  +..+.    ...-|..+|..+....
T Consensus        87 ssG~vrfyte~--G~LL~----~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   87 SSGYVRFYTEN--GVLLL----SQLLHEEPVLKIKCRS  118 (415)
T ss_pred             cccEEEEEecc--chHHH----HHhcCccceEEEEecc
Confidence             9999999986  65554    3445677888777643

>KOG4499|consensus

Probab=95.72  E-value=0.71  Score=35.88  Aligned_cols=133  Identities=13%  Similarity=0.076  Sum_probs=80.7

Q ss_pred             ceeEEEEcCCCCEEEEe-eC---------CcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeE
Q psy2305         114 HAYSLAFSLDGNKIYAG-FL---------SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKII  183 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~-~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i  183 (334)
                      +.+.-..+|+|++.+.. .|         |.++.|-...  + +.    .....-..-+.++|+.+.+.+.++-+.+-.|
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~-v~----~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--Q-VE----LIWNCVGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccCC--C-ce----eeehhccCCccccccccCcEEEEEccCceEE
Confidence            56677889999985522 12         3444444431  1 11    1122223446789998888555666777788


Q ss_pred             EEEE--CCCCC-----ceEeecc----CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEE
Q psy2305         184 GLFS--DSDGR-----PLFFLKG----HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY  252 (334)
Q Consensus       184 ~i~d--~~~~~-----~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  252 (334)
                      .-||  ..+|.     .+..++.    .+-....++...+|++.++.- ..+++...|..+ ++.+.++.-.  ...+++
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~-ng~~V~~~dp~t-GK~L~eiklP--t~qits  258 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF-NGGTVQKVDPTT-GKILLEIKLP--TPQITS  258 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe-cCcEEEEECCCC-CcEEEEEEcC--CCceEE
Confidence            7777  44442     2333322    111223455666787777776 789999999998 8888887765  556777


Q ss_pred             EEecC
Q psy2305         253 FDLTS  257 (334)
Q Consensus       253 ~~~s~  257 (334)
                      ++|--
T Consensus       259 ccFgG  263 (310)
T KOG4499|consen  259 CCFGG  263 (310)
T ss_pred             EEecC
Confidence            77753

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=0.48  Score=36.06  Aligned_cols=187  Identities=12%  Similarity=0.037  Sum_probs=94.0

Q ss_pred             CCCEEEE-ee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc
Q psy2305         123 DGNKIYA-GF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG  199 (334)
Q Consensus       123 ~~~~l~~-~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  199 (334)
                      +|.++.+ |-  ...|+.||+.+ ++.+...++  .  ...+..=-...-+..+....-.+|.-..||.++-+++..+. 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~-gq~~~s~~l--~--~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-  128 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTT-GQEIFSEKL--A--PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-  128 (262)
T ss_pred             CCEEEEeccccccceeEEEeccC-ceEEEEeec--C--CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-
Confidence            3445554 32  57899999997 666654332  1  11111111111233133344568888999998888877765 


Q ss_pred             CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceE---EEEecCCCceEEeeecCCcEEEEeC
Q psy2305         200 HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRV---YFDLTSCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       200 ~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~~~l~~~~~dg~i~iwd~  276 (334)
                      ..+.=..++  .|++.|+.+. ...+++.-|..+ -....++.-...+.++.   .+.| -+|...|-.-.+..|...+.
T Consensus       129 y~GeGWgLt--~d~~~Limsd-GsatL~frdP~t-fa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p  203 (262)
T COG3823         129 YEGEGWGLT--SDDKNLIMSD-GSATLQFRDPKT-FAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDP  203 (262)
T ss_pred             cCCcceeee--cCCcceEeeC-CceEEEecCHHH-hhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcC
Confidence            344445554  4565666665 566777777665 22223222221222222   1222 25555555555555555555


Q ss_pred             CCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEee
Q psy2305         277 NTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~  325 (334)
                      ++++....-+.......+..-..+.+..+.+++  .|++.   ++++||
T Consensus       204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~--~~~~~---r~~iTG  247 (262)
T COG3823         204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAH--DPQQD---RFLITG  247 (262)
T ss_pred             CCCcEEEEEEccCCchhcCccccccccccceee--cCcCC---eEEEec
Confidence            555321000000000122222334556788999  88762   555554

>KOG1916|consensus

Probab=95.67  E-value=0.023  Score=52.12  Aligned_cols=140  Identities=15%  Similarity=0.152  Sum_probs=81.6

Q ss_pred             CcEEEEeCC--CCeeeEEEcCccccccccceeEEEEcC---CCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          87 APIHLWDSV--GGEIKATYRPYNQVDEVTHAYSLAFSL---DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        87 ~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      |.+.+|++.  .|+....+..+........+.-+.|.|   +.-++..+. ++++++...++..+.      .+.+|...
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~------l~rsHs~~  226 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS------LFRSHSQR  226 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHH------HHHhcCCC
Confidence            678889764  455444333322211111445555655   445555665 788988887652221      23446655


Q ss_pred             eEEEE-----------EcCCCCcEEEEeecCCeEEEEECC-----CCCceEeeccCC-CCeEEEEEccCC---------c
Q psy2305         161 VSAIA-----------INPVHPDICALGTYSKIIGLFSDS-----DGRPLFFLKGHN-GGITHLEFSSNG---------I  214 (334)
Q Consensus       161 v~~~~-----------~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~-~~i~~~~~~~~~---------~  214 (334)
                      +..++           .+|||. .++.++.||.++.|.+.     ...+....+.|. .+-.|.-++.+.         .
T Consensus       227 ~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~  305 (1283)
T KOG1916|consen  227 VTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWV  305 (1283)
T ss_pred             cccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeE
Confidence            54443           689999 99999999988877662     334556666666 333333343321         2


Q ss_pred             EEEeeecCCCeEEEEEccC
Q psy2305         215 LLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~  233 (334)
                      ++++++.....+++|....
T Consensus       306 ~~Itttd~nre~k~w~~a~  324 (1283)
T KOG1916|consen  306 LRITTTDVNREEKFWAEAP  324 (1283)
T ss_pred             EEEecccCCcceeEeeccc
Confidence            4555553566789998775

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.65  E-value=1.9  Score=40.30  Aligned_cols=90  Identities=13%  Similarity=0.133  Sum_probs=56.0

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCc-eeeeeCC-----CCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELH-CKSVWRP-----SNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      |..|.+||+|++||..|..| |.|-.+...-. ...+...     +...+--...+.......|..+.|+|.    ++++
T Consensus        87 v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~----s~~~  161 (717)
T PF10168_consen   87 VHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPW----SESD  161 (717)
T ss_pred             EEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCC----CCCC
Confidence            78899999999999998876 44444432100 0000000     000011112233344568999999884    6677


Q ss_pred             cEEEEeeCCCcEEEEeCCCCe
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGE   98 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~   98 (334)
                      ..|++=..|+++++||+...+
T Consensus       162 ~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CeEEEEecCCEEEEEecCCCC
Confidence            888888899999999996543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2280|consensus

Probab=95.45  E-value=2  Score=39.31  Aligned_cols=178  Identities=11%  Similarity=0.034  Sum_probs=91.1

Q ss_pred             cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEEEc
Q psy2305          88 PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN  167 (334)
Q Consensus        88 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (334)
                      .|+|++. +|+.+..+.-...     .+-.+.|+.+..+|+..-+|++.+|++-  +................|..+.+.
T Consensus        65 ~I~If~~-sG~lL~~~~w~~~-----~lI~mgWs~~eeLI~v~k~g~v~Vy~~~--ge~ie~~svg~e~~~~~I~ec~~f  136 (829)
T KOG2280|consen   65 YIRIFNI-SGQLLGRILWKHG-----ELIGMGWSDDEELICVQKDGTVHVYGLL--GEFIESNSVGFESQMSDIVECRFF  136 (829)
T ss_pred             eEEEEec-cccchHHHHhcCC-----CeeeecccCCceEEEEeccceEEEeecc--hhhhcccccccccccCceeEEEEe
Confidence            4788886 5666655544332     6789999999887777779999999987  444332111112223345555555


Q ss_pred             CCCCcEEEEeecCCeEEEEECCCCCceEeecc---CCCCeEEEEEccCCc---EEEeeecCCCeEEEEEccCCCccceee
Q psy2305         168 PVHPDICALGTYSKIIGLFSDSDGRPLFFLKG---HNGGITHLEFSSNGI---LLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       168 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~---~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                      .+|- .+  -..+|.+.+-.-.......+++.   ...+-.+-...+++.   .++-.....+ ..++-..........+
T Consensus       137 ~~GV-av--lt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  137 HNGV-AV--LTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHAL  212 (829)
T ss_pred             cCce-EE--EecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccccccc
Confidence            5653 23  33455555544222222233321   111112222222221   1111110011 0111111101111111


Q ss_pred             cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         242 PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       242 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ..  ....+..+..||+.++|+-=...|.|.+-+.+..
T Consensus       213 ~~--~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  213 SW--PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             CC--CCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence            11  1245667889999999999899999999887765

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.38  E-value=1.5  Score=37.30  Aligned_cols=200  Identities=12%  Similarity=0.130  Sum_probs=106.1

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCE--EEEee--C---CcEEEEEcCCCCCe
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK--IYAGF--L---SEVKIFSTDRPGRE  146 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~--d---~~i~i~d~~~~~~~  146 (334)
                      +|...+++....++-+.+||+ .|+.++.+.. ...+...-...+.+  .|+.  |+.++  +   ..|++|.++.....
T Consensus        65 dp~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~-Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~  140 (381)
T PF02333_consen   65 DPAKSLIIGTDKKGGLYVYDL-DGKELQSLPV-GRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGE  140 (381)
T ss_dssp             -GGG-EEEEEETTTEEEEEET-TS-EEEEE-S-S-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred             CcccceEEEEeCCCCEEEEcC-CCcEEEeecC-CCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence            456667888888888999998 4666666643 11111112223333  3433  44443  2   46999988742233


Q ss_pred             eeeecc---cccccccceEEEEE--cC-CCCcEEEEeecCCeEEEEECC---CC----CceEeeccCCCCeEEEEEccCC
Q psy2305         147 CVSRNL---KPWFRKNIVSAIAI--NP-VHPDICALGTYSKIIGLFSDS---DG----RPLFFLKGHNGGITHLEFSSNG  213 (334)
Q Consensus       147 ~~~~~~---~~~~~~~~v~~~~~--~~-~~~~~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~i~~~~~~~~~  213 (334)
                      +....-   .+......+..+++  +| +|..+++....+|.+..|.+.   ++    +.++.|.. ...+..+......
T Consensus       141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~  219 (381)
T PF02333_consen  141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET  219 (381)
T ss_dssp             EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT
T ss_pred             ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc
Confidence            332100   01111234666666  44 455456667788998888774   23    34666664 4478888888888


Q ss_pred             cEEEeeecCCCeEEEEEccCCCcc----ceeecccccCCceEEEEe--cCCC-ceEEee-ecCCcEEEEeCCCC
Q psy2305         214 ILLFSGARKDCEIICWDLRNPGCI----LHTFPRQVSTNQRVYFDL--TSCS-NYLLSG-NTNGDLSIWNVNTS  279 (334)
Q Consensus       214 ~~l~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~--s~~~-~~l~~~-~~dg~i~iwd~~~~  279 (334)
                      .+|+.+- ++.-|.-|+.+.....    +....+......+-.+++  .+++ .||+++ -.+++..+|+.+..
T Consensus       220 g~LYvgE-E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  220 GRLYVGE-EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             TEEEEEE-TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             CCEEEec-CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            8999998 8888888887642211    111112111222333333  3444 355544 44788999998764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG2280|consensus

Probab=95.38  E-value=2.2  Score=39.15  Aligned_cols=168  Identities=13%  Similarity=0.105  Sum_probs=81.3

Q ss_pred             eEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEE
Q psy2305          60 IIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFS  139 (334)
Q Consensus        60 ~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d  139 (334)
                      .+-.+.|       +.+. .|++...+|++.+|++. |+.+..... ........|..+.+..+|-.+.+.++.-+.+-+
T Consensus        85 ~lI~mgW-------s~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~sv-g~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~  154 (829)
T KOG2280|consen   85 ELIGMGW-------SDDE-ELICVQKDGTVHVYGLL-GEFIESNSV-GFESQMSDIVECRFFHNGVAVLTVSGQVILING  154 (829)
T ss_pred             Ceeeecc-------cCCc-eEEEEeccceEEEeecc-hhhhccccc-ccccccCceeEEEEecCceEEEecCCcEEEEcC
Confidence            5556666       5454 46667789999999974 444433211 000011145666666666444444444444444


Q ss_pred             cCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCe--EEEEECCCC-CceEeeccCCCCeEEEEEccCCcEE
Q psy2305         140 TDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKI--IGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILL  216 (334)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l  216 (334)
                      ...  ......+ .......+-.|-...+++......-.-+..  ..++..... .....+....+.+..+..||+.++|
T Consensus       155 ~~~--~~~~~~~-diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~l  231 (829)
T KOG2280|consen  155 VEE--PKLRKMP-DIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFL  231 (829)
T ss_pred             CCc--chhhhCC-CCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceE
Confidence            432  1111100 111111121233333332201110111100  111211111 1122232234567889999999999


Q ss_pred             EeeecCCCeEEEEEccCCCccceeec
Q psy2305         217 FSGARKDCEIICWDLRNPGCILHTFP  242 (334)
Q Consensus       217 ~~~~~~d~~i~iwd~~~~~~~~~~~~  242 (334)
                      +--. ..|.|.+-+.+. .+.+..+.
T Consensus       232 aLyt-~~G~i~~vs~D~-~~~lce~~  255 (829)
T KOG2280|consen  232 ALYT-ETGKIWVVSIDL-SQILCEFN  255 (829)
T ss_pred             EEEe-cCCcEEEEecch-hhhhhccC
Confidence            9998 899999988876 55555554

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.35  E-value=1.8  Score=37.97  Aligned_cols=34  Identities=9%  Similarity=0.059  Sum_probs=25.6

Q ss_pred             CCceeEEEEcCCCcEEEEeeCCCeEEEEECCCCC
Q psy2305           1 MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSEL   34 (334)
Q Consensus         1 ~d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~   34 (334)
                      |+.-+.|+|.|||++|++--..|.|++++..++.
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~   62 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGE   62 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc
Confidence            3567899999999877665446999999865543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.34  E-value=1.1  Score=35.72  Aligned_cols=240  Identities=14%  Similarity=0.116  Sum_probs=129.8

Q ss_pred             EEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC
Q psy2305           6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM   85 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~   85 (334)
                      .++-.|||..-+++...+.|--.|..+++..               .+....+.       +|..+...|||..-++-+.
T Consensus        66 dvapapdG~VWft~qg~gaiGhLdP~tGev~---------------~ypLg~Ga-------~Phgiv~gpdg~~Witd~~  123 (353)
T COG4257          66 DVAPAPDGAVWFTAQGTGAIGHLDPATGEVE---------------TYPLGSGA-------SPHGIVVGPDGSAWITDTG  123 (353)
T ss_pred             ccccCCCCceEEecCccccceecCCCCCceE---------------EEecCCCC-------CCceEEECCCCCeeEecCc
Confidence            4556677777777766666666666666654               22222221       1233444667766555333


Q ss_pred             CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEE
Q psy2305          86 YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIA  165 (334)
Q Consensus        86 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (334)
                      . -|.-.|.++.+.. .+..... ..........|.+.|++-+++..|.---.|..+  ..+...   -.........|+
T Consensus       124 ~-aI~R~dpkt~evt-~f~lp~~-~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~--~~i~vf---paPqG~gpyGi~  195 (353)
T COG4257         124 L-AIGRLDPKTLEVT-RFPLPLE-HADANLETAVFDPWGNLWFTGQIGAYGRLDPAR--NVISVF---PAPQGGGPYGIC  195 (353)
T ss_pred             c-eeEEecCcccceE-Eeecccc-cCCCcccceeeCCCccEEEeeccccceecCccc--Cceeee---ccCCCCCCcceE
Confidence            2 3444565555432 2222111 111267788999999998887643322223221  122211   111234456788


Q ss_pred             EcCCCCcEEEEeecCCeEEEEECCCCCceEee--ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecc
Q psy2305         166 INPVHPDICALGTYSKIIGLFSDSDGRPLFFL--KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR  243 (334)
Q Consensus       166 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~  243 (334)
                      ..|+|. .-++.-.+..|-..|..++.....-  ......-..+--+|.|+.-++.. ..+.+..+|.....-....+.+
T Consensus       196 atpdGs-vwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittw-g~g~l~rfdPs~~sW~eypLPg  273 (353)
T COG4257         196 ATPDGS-VWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTW-GTGSLHRFDPSVTSWIEYPLPG  273 (353)
T ss_pred             ECCCCc-EEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEecc-CCceeeEeCcccccceeeeCCC
Confidence            999999 6666667777888887666322111  11122344555677888777766 6888888887752211222322


Q ss_pred             cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         244 QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       244 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .  .....++.....++.-.+--..|.|.-+|.++.
T Consensus       274 s--~arpys~rVD~~grVW~sea~agai~rfdpeta  307 (353)
T COG4257         274 S--KARPYSMRVDRHGRVWLSEADAGAIGRFDPETA  307 (353)
T ss_pred             C--CCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence            2  233334444555655554444567777777764

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.25  E-value=0.42  Score=41.51  Aligned_cols=138  Identities=11%  Similarity=0.036  Sum_probs=88.1

Q ss_pred             CCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC--------cEEEeeecCCCeEEEEEccCCCccce
Q psy2305         168 PVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG--------ILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       168 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                      .+..-++..|+....++-.|++-|+.+..+..|...  -+.|.|..        +.|+-.  .+..|.-.|.+..+..+.
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGl--S~~svFrIDPR~~gNKi~  552 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGL--SDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEee--cccceEEecccccCCcee
Confidence            344423345666778899999999999998877664  47777753        244444  477777778876453332


Q ss_pred             eecc--cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccc
Q psy2305         240 TFPR--QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERD  317 (334)
Q Consensus       240 ~~~~--~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~  317 (334)
                      ....  ........+. ......|+|+++..|.|++||--..            +....+++-...|..+..  +.+|  
T Consensus       553 v~esKdY~tKn~Fss~-~tTesGyIa~as~kGDirLyDRig~------------rAKtalP~lG~aIk~idv--ta~G--  615 (776)
T COG5167         553 VVESKDYKTKNKFSSG-MTTESGYIAAASRKGDIRLYDRIGK------------RAKTALPGLGDAIKHIDV--TANG--  615 (776)
T ss_pred             eeeehhcccccccccc-ccccCceEEEecCCCceeeehhhcc------------hhhhcCcccccceeeeEe--ecCC--
Confidence            2221  1111111111 1235569999999999999996654            344556677778999999  9999  


Q ss_pred             ceeeEEeeecc
Q psy2305         318 LLVADATCSGQ  328 (334)
Q Consensus       318 ~~~~l~t~~~d  328 (334)
                        .++++.+..
T Consensus       616 --k~ilaTCk~  624 (776)
T COG5167         616 --KHILATCKN  624 (776)
T ss_pred             --cEEEEeecc
Confidence              776555443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.22  E-value=1.6  Score=36.70  Aligned_cols=116  Identities=19%  Similarity=0.200  Sum_probs=68.0

Q ss_pred             ceEEEEEcCCCCcEEEEeecC------CeEEEEECCCCCceEeec---------------cCCCCeEEEEEccCCcEEEe
Q psy2305         160 IVSAIAINPVHPDICALGTYS------KIIGLFSDSDGRPLFFLK---------------GHNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~  218 (334)
                      ..-++++.+++. ++++.-.+      ..|..++.. ++....+.               ..+....+|+++|+|+.|++
T Consensus        86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~  163 (326)
T PF13449_consen   86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA  163 (326)
T ss_pred             ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence            344788877887 77766666      788888865 65544431               13456789999999997776


Q ss_pred             eec----CCC---------eEEEEEcc--CCCccceeecccc-------cCCceEEEEecCCCceEEeee-----cCCcE
Q psy2305         219 GAR----KDC---------EIICWDLR--NPGCILHTFPRQV-------STNQRVYFDLTSCSNYLLSGN-----TNGDL  271 (334)
Q Consensus       219 ~~~----~d~---------~i~iwd~~--~~~~~~~~~~~~~-------~~~~~~~~~~s~~~~~l~~~~-----~dg~i  271 (334)
                      +..    .|+         .++++...  ..+.....+....       ....+..+.+-+++++|+.=-     ....+
T Consensus       164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~  243 (326)
T PF13449_consen  164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYK  243 (326)
T ss_pred             EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceE
Confidence            651    111         14555444  3232333332221       245566777888998776421     23455


Q ss_pred             EEEeCC
Q psy2305         272 SIWNVN  277 (334)
Q Consensus       272 ~iwd~~  277 (334)
                      +|+.+.
T Consensus       244 ri~~v~  249 (326)
T PF13449_consen  244 RIYRVD  249 (326)
T ss_pred             EEEEEE
Confidence            555443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.92  E-value=0.35  Score=37.89  Aligned_cols=69  Identities=16%  Similarity=0.158  Sum_probs=48.4

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcC----ccc-----cccccceeEEEEcCCCCEEEEeeCCcEEEEEcCC
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRP----YNQ-----VDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDR  142 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~-----~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~  142 (334)
                      ..++++|++.+.+|.+++||+.+++....-..    ...     ......|..+.++.+|.-+++-++|....|+.+.
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            33788899999999999999998876432200    000     0112278888888888877776778888888764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.91  E-value=1.3  Score=33.91  Aligned_cols=125  Identities=10%  Similarity=0.028  Sum_probs=61.3

Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc-ccce
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR-KNIV  161 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~v  161 (334)
                      -.+|.-..+|..+-+++..+.-..      .=+.++  .|++.|..++ ...++.-|..+ -.......+...+. -..+
T Consensus       108 w~egvaf~~d~~t~~~lg~~~y~G------eGWgLt--~d~~~LimsdGsatL~frdP~t-fa~~~~v~VT~~g~pv~~L  178 (262)
T COG3823         108 WKEGVAFKYDADTLEELGRFSYEG------EGWGLT--SDDKNLIMSDGSATLQFRDPKT-FAELDTVQVTDDGVPVSKL  178 (262)
T ss_pred             eccceeEEEChHHhhhhcccccCC------cceeee--cCCcceEeeCCceEEEecCHHH-hhhcceEEEEECCeecccc
Confidence            357777888888877766554322      224444  3454555543 55666666553 11111111011111 1122


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee------------ccCCCCeEEEEEccCCc-EEEee
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL------------KGHNGGITHLEFSSNGI-LLFSG  219 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~~~~i~~~~~~~~~~-~l~~~  219 (334)
                      +.+.|- +|. +.|-.-.+..|...|.++|+.+..+            ..+..-.+.+++.|++. ++++|
T Consensus       179 NELE~V-dG~-lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         179 NELEWV-DGE-LYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cceeee-ccE-EEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            334442 333 3443334444555555555544433            23445667899999874 44444

>KOG4460|consensus

Probab=94.76  E-value=2.6  Score=37.07  Aligned_cols=27  Identities=4%  Similarity=-0.171  Sum_probs=18.6

Q ss_pred             EecccceecCCCcEEEEeeCCCcEEEE
Q psy2305          66 WYPKTSSIDGFTSYFLCSSMYAPIHLW   92 (334)
Q Consensus        66 ~~~~~~~~s~~~~~l~~~~~d~~i~iw   92 (334)
                      |...-+..++.|..++.++.+|.+.++
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMe  130 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVME  130 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEE
Confidence            333345568899999988888855443

>KOG1916|consensus

Probab=94.66  E-value=0.063  Score=49.45  Aligned_cols=157  Identities=12%  Similarity=-0.015  Sum_probs=83.0

Q ss_pred             CeEEEEECCC--CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeee
Q psy2305          23 NHLRTFDLPS--ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK  100 (334)
Q Consensus        23 ~~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~  100 (334)
                      |.+.||+++-  ++..          +.+.-......+..+.-+.|+|.    -++.-++..+-.++.+++.+..+... 
T Consensus       153 g~lfVy~vd~l~G~iq----------~~l~v~~~~p~gs~~~~V~wcp~----~~~~~~ic~~~~~~~i~lL~~~ra~~-  217 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQ----------PQLEVTPITPYGSDPQLVSWCPI----AVNKVYICYGLKGGEIRLLNINRALR-  217 (1283)
T ss_pred             hhhheeehHhhccccc----------cceEEeecCcCCCCcceeeeccc----ccccceeeeccCCCceeEeeechHHH-
Confidence            5678888763  2221          11222333334556677788773    44566788888888888877654322 


Q ss_pred             EEEcCcccccc------ccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc-cceEEEEEcCCCC-
Q psy2305         101 ATYRPYNQVDE------VTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK-NIVSAIAINPVHP-  171 (334)
Q Consensus       101 ~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~-  171 (334)
                      ..+..|....-      .+.+.--..+|||+.++.+. ||.++.|.+.-.++....-....+.|. .+-.|.-++.+.. 
T Consensus       218 ~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~  297 (1283)
T KOG1916|consen  218 SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEIL  297 (1283)
T ss_pred             HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeecccccc
Confidence            22333221000      00111223799999999775 999999988754443221111345555 3333333333211 


Q ss_pred             ------c-EEEEe-ecCCeEEEEECCCCCce
Q psy2305         172 ------D-ICALG-TYSKIIGLFSDSDGRPL  194 (334)
Q Consensus       172 ------~-~l~~~-~~dg~i~i~d~~~~~~~  194 (334)
                            . +++++ ..+..+++|.....++.
T Consensus       298 ~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  298 VVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCccceeEEEEecccCCcceeEeeccchhhh
Confidence                  0 22333 34556888876655554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.59  E-value=0.36  Score=37.82  Aligned_cols=65  Identities=12%  Similarity=0.130  Sum_probs=49.0

Q ss_pred             EcCCCCcEEEEeecCCeEEEEECCCCCceEee-------c-------cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305         166 INPVHPDICALGTYSKIIGLFSDSDGRPLFFL-------K-------GHNGGITHLEFSSNGILLFSGARKDCEIICWDL  231 (334)
Q Consensus       166 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~-------~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~  231 (334)
                      +..++. ++++-+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-|++-+  +|..+.|+.
T Consensus        18 l~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls--ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS--NGDSYSYSP   94 (219)
T ss_pred             EEeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe--CCCEEEecc
Confidence            445666 8888999999999999887654321       1       3456788888888888777766  678888887


Q ss_pred             cC
Q psy2305         232 RN  233 (334)
Q Consensus       232 ~~  233 (334)
                      ..
T Consensus        95 ~L   96 (219)
T PF07569_consen   95 DL   96 (219)
T ss_pred             cc
Confidence            74

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=94.53  E-value=0.23  Score=26.50  Aligned_cols=33  Identities=12%  Similarity=0.247  Sum_probs=22.2

Q ss_pred             eccCCCCeEEEEEccCCcEEEeeecCC--CeEEEE
Q psy2305         197 LKGHNGGITHLEFSSNGILLFSGARKD--CEIICW  229 (334)
Q Consensus       197 ~~~~~~~i~~~~~~~~~~~l~~~~~~d--~~i~iw  229 (334)
                      +...........|+|||+.|+..+..+  |...||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334555677899999999988877455  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1900|consensus

Probab=94.41  E-value=1.5  Score=42.79  Aligned_cols=150  Identities=15%  Similarity=0.162  Sum_probs=85.7

Q ss_pred             eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEE-EEecccceecCCCcEEEEeeCCCcEEEEeCC---
Q psy2305          20 SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDY-VWYPKTSSIDGFTSYFLCSSMYAPIHLWDSV---   95 (334)
Q Consensus        20 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~---   95 (334)
                      +.|+.+.+|+.+++...+              .+.+.. ..|..+ -..|..=.|-|.=+++++-+.--.|.++-+.   
T Consensus        96 TiDn~L~lWny~~~~e~~--------------~~d~~s-htIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~  160 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELA--------------EYDGLS-HTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE  160 (1311)
T ss_pred             EeCCeEEEEEcCCCCccc--------------cccchh-hhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence            468899999999855431              222221 223222 2233333445555555555555556666332   


Q ss_pred             -CCee---eEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcC----CC--CCeeeeec-------------c
Q psy2305          96 -GGEI---KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTD----RP--GRECVSRN-------------L  152 (334)
Q Consensus        96 -~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~----~~--~~~~~~~~-------------~  152 (334)
                       ++..   ...++...  + ...|.++....+|+.+++|.||.  +|.+.    ..  ++.+....             +
T Consensus       161 ~~~~~~~f~~~~~i~~--d-g~~V~~I~~t~nGRIF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~  235 (1311)
T KOG1900|consen  161 FTGELSIFNTSFKISV--D-GVSVNCITYTENGRIFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL  235 (1311)
T ss_pred             ccCcccccccceeeec--C-CceEEEEEeccCCcEEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence             2211   11111101  1 11788999889999999998774  44432    10  11111110             0


Q ss_pred             ccc-ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC
Q psy2305         153 KPW-FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD  190 (334)
Q Consensus       153 ~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  190 (334)
                      ... .+..+|..++...... ++.+=++.|+|.+||+..
T Consensus       236 ~~~~~~~dpI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  236 SVPGSSKDPIRQITIDNSRN-ILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             cCCCCCCCcceeeEeccccc-eeeeeccCceEEEEEccC
Confidence            233 5677999999988777 999999999999999965

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.40  E-value=4.7  Score=38.19  Aligned_cols=217  Identities=13%  Similarity=0.129  Sum_probs=111.9

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecc--cc-------eecCCCcEEEEe
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK--TS-------SIDGFTSYFLCS   83 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~-------~~s~~~~~l~~~   83 (334)
                      +..|+.++.++.|.-.|..+++..-.+...........      + .....+.+...  ..       +-...+..++.+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~------~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~  266 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQ------H-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILP  266 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccc------c-ccccceEEecCCcccccccccccccccCCEEEEe
Confidence            45677788888999999999987644332211100000      0 00111111100  00       001234577788


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccc------c-ccceeEEEEcC--CCCEEEEee-----------CCcEEEEEcCCC
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVD------E-VTHAYSLAFSL--DGNKIYAGF-----------LSEVKIFSTDRP  143 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~------~-~~~v~~~~~~~--~~~~l~~~~-----------d~~i~i~d~~~~  143 (334)
                      +.|+.+.-.|.++|+....+......+      . ...-..+.-.|  .+..+++|+           +|.|+-+|..+ 
T Consensus       267 T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T-  345 (764)
T TIGR03074       267 TSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT-  345 (764)
T ss_pred             cCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC-
Confidence            889999999999999887764321100      0 00000111112  123444441           47799999988 


Q ss_pred             CCeeeeecccc--------c------ccccceEEEEEcCCCCcEEEEee------------------cCCeEEEEECCCC
Q psy2305         144 GRECVSRNLKP--------W------FRKNIVSAIAINPVHPDICALGT------------------YSKIIGLFSDSDG  191 (334)
Q Consensus       144 ~~~~~~~~~~~--------~------~~~~~v~~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~~  191 (334)
                      ++..-......        .      +....=..++++++.. +++.+.                  ..+.|.-.|.+++
T Consensus       346 Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TG  424 (764)
T TIGR03074       346 GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTG  424 (764)
T ss_pred             CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeCCCC
Confidence            66554321100        0      0000012345555544 443321                  2346777788888


Q ss_pred             CceEeeccCCCCeEE---------EEEcc-CCc---EEEeeecCCCeEEEEEccCCCcccee
Q psy2305         192 RPLFFLKGHNGGITH---------LEFSS-NGI---LLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       192 ~~~~~~~~~~~~i~~---------~~~~~-~~~---~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      +..-.++.....+..         +.+.. +|+   .++.++ .+|.+++.|-++ ++++..
T Consensus       425 k~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~t-G~~l~~  484 (764)
T TIGR03074       425 KERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRT-GEPIVP  484 (764)
T ss_pred             ceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCC-CCEEee
Confidence            887766542211111         22222 563   788888 899999999987 665543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.39  E-value=1.2  Score=33.45  Aligned_cols=35  Identities=9%  Similarity=0.158  Sum_probs=26.4

Q ss_pred             eEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCC
Q psy2305          60 IIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSV   95 (334)
Q Consensus        60 ~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~   95 (334)
                      .+..++|+|..+.-+ .+-+|++.+.++.|.||...
T Consensus        87 ~vv~~aWSP~Gl~~~-~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPN-GRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCC-CceEEEEEcCCCeEEEEecC
Confidence            788899988654422 34568888899999999865

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1900|consensus

Probab=93.92  E-value=1.9  Score=41.99  Aligned_cols=143  Identities=12%  Similarity=0.132  Sum_probs=86.6

Q ss_pred             CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEE--------cCCCC-EEEEeeCCcEEEEEcCCCCC----eeeeec
Q psy2305          85 MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAF--------SLDGN-KIYAGFLSEVKIFSTDRPGR----ECVSRN  151 (334)
Q Consensus        85 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~-~l~~~~d~~i~i~d~~~~~~----~~~~~~  151 (334)
                      .|+.+.+|+.+++.....+....|     .|..+..        .|.=+ .|+.+.--.|.++-+.-...    ......
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~sh-----tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~  171 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSH-----TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS  171 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhh-----hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc
Confidence            478899999999777777776665     4544443        23323 34455556666665442111    111000


Q ss_pred             ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEEC--CCC---C-c----------------eEeec-cCCCCeEEEE
Q psy2305         152 LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSD--SDG---R-P----------------LFFLK-GHNGGITHLE  208 (334)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~---~-~----------------~~~~~-~~~~~i~~~~  208 (334)
                      +........|+|+....+|+ .+. ++.||.|+-.-.  ..+   + +                +-.+. .+..+|..++
T Consensus       172 ~~i~~dg~~V~~I~~t~nGR-IF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~  249 (1311)
T KOG1900|consen  172 FKISVDGVSVNCITYTENGR-IFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT  249 (1311)
T ss_pred             eeeecCCceEEEEEeccCCc-EEE-eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence            01223355788999888998 666 456674442221  111   1 1                01122 4567899999


Q ss_pred             EccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305         209 FSSNGILLFSGARKDCEIICWDLRNPG  235 (334)
Q Consensus       209 ~~~~~~~l~~~~~~d~~i~iwd~~~~~  235 (334)
                      .......+++-+ ..++|.+||+...+
T Consensus       250 ID~SR~IlY~ls-ek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  250 IDNSRNILYVLS-EKGTVSAYDIGGNG  275 (1311)
T ss_pred             eccccceeeeec-cCceEEEEEccCCC
Confidence            988888899998 89999999998644

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.92  E-value=3.1  Score=34.27  Aligned_cols=141  Identities=9%  Similarity=0.141  Sum_probs=77.7

Q ss_pred             cEEEEEcCCCCCeeeeecc--cccccccceEEEEEcCCCC----cEEE-EeecCCeEEEEECCCCCceEeeccC------
Q psy2305         134 EVKIFSTDRPGRECVSRNL--KPWFRKNIVSAIAINPVHP----DICA-LGTYSKIIGLFSDSDGRPLFFLKGH------  200 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~----~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~------  200 (334)
                      .|.+||+.+ ++.++...+  ......+.+..+.+.....    .++. +-...+.|.++|+.+++.-+.+..+      
T Consensus        35 KLv~~Dl~t-~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   35 KLVAFDLKT-NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             EEEEEETTT-TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             EEEEEECCC-CcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            566777776 445443322  1122345677888766321    1333 3344568999999887655444221      


Q ss_pred             -------------CCCeEEEEEcc---CCcEEEeeecCCCeEEEEEccC-----CCc--------cceeecccccCCceE
Q psy2305         201 -------------NGGITHLEFSS---NGILLFSGARKDCEIICWDLRN-----PGC--------ILHTFPRQVSTNQRV  251 (334)
Q Consensus       201 -------------~~~i~~~~~~~---~~~~l~~~~~~d~~i~iwd~~~-----~~~--------~~~~~~~~~~~~~~~  251 (334)
                                   ...+..++.+|   +++.|+... ..+ -++|.+.+     ...        .+..+ +. ......
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~-lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~-k~~~s~  189 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHP-LSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GD-KGSQSD  189 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEE-TT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE----SEC
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEe-CCC-CcEEEEEHHHhhCccccccccccccceec-cc-cCCCCc
Confidence                         12366777765   777787766 332 33444432     000        01111 11 012344


Q ss_pred             EEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         252 YFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       252 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .++++++|.++++--..+.|..|+....
T Consensus       190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~  217 (287)
T PF03022_consen  190 GMAIDPNGNLYFTDVEQNAIGCWDPDGP  217 (287)
T ss_dssp             EEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred             eEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence            5778899999998888999999998873

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.90  E-value=6.1  Score=37.68  Aligned_cols=160  Identities=9%  Similarity=0.019  Sum_probs=92.9

Q ss_pred             ceeEEEEc---C----CCCEEEEeeCCcEEEEEcCCC------CC---eeeeecc-ccc---ccccceEEEEEcCCCCcE
Q psy2305         114 HAYSLAFS---L----DGNKIYAGFLSEVKIFSTDRP------GR---ECVSRNL-KPW---FRKNIVSAIAINPVHPDI  173 (334)
Q Consensus       114 ~v~~~~~~---~----~~~~l~~~~d~~i~i~d~~~~------~~---~~~~~~~-~~~---~~~~~v~~~~~~~~~~~~  173 (334)
                      +|..++|.   .    ..++|++-....+.|+...-.      ..   .+...++ .+.   ....+...++|+|.....
T Consensus        81 PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q  160 (765)
T PF10214_consen   81 PIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQ  160 (765)
T ss_pred             CeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccce
Confidence            67777777   2    224666656777888772210      00   0100000 111   123467789999987779


Q ss_pred             EEEeecCCeEEEEECCCC-----CceEeeccCCC----------CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         174 CALGTYSKIIGLFSDSDG-----RPLFFLKGHNG----------GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       174 l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      ||+....|...|||+...     ........+.+          .-..+.|.++-+.|++++  ...+.++|+..... .
T Consensus       161 ~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~--r~~l~~~d~~~~~~-~  237 (765)
T PF10214_consen  161 FAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN--RSKLMLIDFESNWQ-T  237 (765)
T ss_pred             EEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc--CCceEEEECCCCCc-c
Confidence            999999999999999211     11111111122          234788988888888887  67899999986322 1


Q ss_pred             eeecccccCCceEEEEecCC--CceEEeeecCCcEEEEeCCC
Q psy2305         239 HTFPRQVSTNQRVYFDLTSC--SNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~dg~i~iwd~~~  278 (334)
                      ..+........+..+.-+|.  +..++..  ...|...++..
T Consensus       238 ~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  238 EYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS  277 (765)
T ss_pred             chhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence            21333334566777777776  2333322  24566666666

These proteins are found in fungi.

>KOG1898|consensus

Probab=93.87  E-value=6.4  Score=37.79  Aligned_cols=180  Identities=13%  Similarity=0.093  Sum_probs=104.6

Q ss_pred             cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC--EEEEee------------CCcEEEEEcCCCCCeeeeeccc
Q psy2305          88 PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN--KIYAGF------------LSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        88 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~------------d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      .|++.|..+++.+..+........ -.+..+.|+....  +++++.            +|.++.|++-..+..+...  .
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a-~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lell--h  930 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAA-FSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELL--H  930 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcch-hheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeee--e
Confidence            377888777776655543222111 1566777776443  333321            2346777766545533310  1


Q ss_pred             ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec--cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305         154 PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK--GHNGGITHLEFSSNGILLFSGARKDCEIICWDL  231 (334)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~  231 (334)
                      ...-..++  .+..|... .+++ +....+++||+-..++++...  .-...|..+.+.  +..+++|. ..-.+.++..
T Consensus       931 ~T~~~~~v--~Ai~~f~~-~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD-~qeSV~~~~y 1003 (1205)
T KOG1898|consen  931 KTEIPGPV--GAICPFQG-RVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGD-IQESVHFVRY 1003 (1205)
T ss_pred             ccCCCccc--eEEeccCC-EEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEee-ccceEEEEEE
Confidence            12223344  44567766 5554 456799999998776655442  224556677664  56788887 5666666655


Q ss_pred             cCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         232 RNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      +...+.+..+........++++.+ -|-..+|.+..=|.+.+-.+..
T Consensus      1004 ~~~~n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1004 RREDNQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             ecCCCeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECCC
Confidence            554666667766555555665533 3556677777777777776654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.75  E-value=0.74  Score=34.60  Aligned_cols=31  Identities=13%  Similarity=0.176  Sum_probs=24.9

Q ss_pred             CCeEEEEEccCC------cEEEeeecCCCeEEEEEccC
Q psy2305         202 GGITHLEFSSNG------ILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       202 ~~i~~~~~~~~~------~~l~~~~~~d~~i~iwd~~~  233 (334)
                      ..+.+++|||.|      -+|++.+ .++.+.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLT-s~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLT-SNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEc-CCCeEEEEecCC
Confidence            378899999954      3677788 899999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.72  E-value=1.7  Score=30.67  Aligned_cols=105  Identities=13%  Similarity=0.130  Sum_probs=62.4

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCe--------eeEEEcCccccccccceeEEE---EcC--CCCEEEEeeCCcEEEEEc
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGE--------IKATYRPYNQVDEVTHAYSLA---FSL--DGNKIYAGFLSEVKIFST  140 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~v~~~~---~~~--~~~~l~~~~d~~i~i~d~  140 (334)
                      ......|++++.-|.|.|++.....        .+..+....      .|++++   |.|  +...|+.|+...+..||+
T Consensus         7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~------~italaaG~l~~~~~~D~LliGt~t~llaYDV   80 (136)
T PF14781_consen    7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ------EITALAAGRLKPDDGRDCLLIGTQTSLLAYDV   80 (136)
T ss_pred             CCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC------ceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence            3344468888888899999865332        233333222      555654   433  346788999999999999


Q ss_pred             CCCCCeeeeecccccccccceEEEEEcC----CCCcEEEEeecCCeEEEEECCCCC
Q psy2305         141 DRPGRECVSRNLKPWFRKNIVSAIAINP----VHPDICALGTYSKIIGLFSDSDGR  192 (334)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~  192 (334)
                      ... ..+     ..+.-...|+++.+-.    ..+ ++++| -+-.|.-||.+-.+
T Consensus        81 ~~N-~d~-----Fyke~~DGvn~i~~g~~~~~~~~-l~ivG-Gncsi~Gfd~~G~e  128 (136)
T PF14781_consen   81 ENN-SDL-----FYKEVPDGVNAIVIGKLGDIPSP-LVIVG-GNCSIQGFDYEGNE  128 (136)
T ss_pred             ccC-chh-----hhhhCccceeEEEEEecCCCCCc-EEEEC-ceEEEEEeCCCCcE
Confidence            863 322     2344456677776632    223 44444 46677777754333

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.51  E-value=1.9  Score=30.47  Aligned_cols=108  Identities=17%  Similarity=0.184  Sum_probs=63.5

Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEECCCC--------CceEeeccCCCCeEEEEEcc-----CCcEEEeeecCCCeEEEE
Q psy2305         163 AIAINPVHPDICALGTYSKIIGLFSDSDG--------RPLFFLKGHNGGITHLEFSS-----NGILLFSGARKDCEIICW  229 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~~d~~i~iw  229 (334)
                      .-.|....+ .|+.++.-|+|.|++....        ..+..|. -...|++++-.|     ....|+.|+  ...+..|
T Consensus         3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt--~t~llaY   78 (136)
T PF14781_consen    3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT--QTSLLAY   78 (136)
T ss_pred             EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec--cceEEEE
Confidence            345666777 7888888999999987532        2334443 455677776443     234677776  7889999


Q ss_pred             EccCCCccceeecccccCCceEEEEe---cC-CCceEEeeecCCcEEEEeCCCC
Q psy2305         230 DLRNPGCILHTFPRQVSTNQRVYFDL---TS-CSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~---s~-~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      |+........+--    ...+.++.+   .. ...++++| .+..|.-||.+..
T Consensus        79 DV~~N~d~Fyke~----~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~  127 (136)
T PF14781_consen   79 DVENNSDLFYKEV----PDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN  127 (136)
T ss_pred             EcccCchhhhhhC----ccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence            9987433322211    122333322   22 23444444 4566777776654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.47  E-value=0.8  Score=39.26  Aligned_cols=158  Identities=10%  Similarity=-0.025  Sum_probs=83.3

Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCCCCeee-EEEcCcccccccccee-EEEEcCCCCEEEEee-CCcEEEE-EcCCCCCe
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIK-ATYRPYNQVDEVTHAY-SLAFSLDGNKIYAGF-LSEVKIF-STDRPGRE  146 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~-d~~i~i~-d~~~~~~~  146 (334)
                      +-..|||+.+..-+. .++.++++.+.... +.+-.....+....|+ .+..-..|.-|.+++ ||-|.-| |++..+..
T Consensus       226 llL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p  304 (733)
T COG4590         226 LLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQP  304 (733)
T ss_pred             hEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCC
Confidence            456889998777654 57888887653321 1111110100001222 222223445555565 8877766 55543332


Q ss_pred             eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305         147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEI  226 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i  226 (334)
                      .......+.-...++..+.-..+.+ -+++-..+|++..+.....+.+- +..--..+.-+++||++.+|++-.  .|.|
T Consensus       305 ~l~h~R~f~l~pa~~~~l~pe~~rk-gF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e~--~gki  380 (733)
T COG4590         305 HLNHIRNFKLAPAEVQFLLPETNRK-GFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSED--QGKI  380 (733)
T ss_pred             cceeeeccccCcccceeeccccccc-eEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchheeec--CCce
Confidence            1110001111123333333222333 66777778888887754443332 222223566789999999998764  7889


Q ss_pred             EEEEccC
Q psy2305         227 ICWDLRN  233 (334)
Q Consensus       227 ~iwd~~~  233 (334)
                      +++.+++
T Consensus       381 ~~~~l~N  387 (733)
T COG4590         381 RLAQLEN  387 (733)
T ss_pred             EEEEecC
Confidence            9999886

>PHA02790 Kelch-like protein; Provisional

Probab=93.39  E-value=5.6  Score=35.59  Aligned_cols=141  Identities=9%  Similarity=0.028  Sum_probs=65.2

Q ss_pred             CCcEEEEeeCC--CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C---CcEEEEEcCCCCCeeee
Q psy2305          76 FTSYFLCSSMY--APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L---SEVKIFSTDRPGRECVS  149 (334)
Q Consensus        76 ~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~  149 (334)
                      ++.+.+.|+.+  ..+..||..+++....-......    .-.+++ .-+|+..+.|+ +   ..+..||..+.  .-..
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r----~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~  390 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPR----CNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHD--QWQF  390 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCC----cccEEE-EECCEEEEecCcCCCCccEEEEeCCCC--EEEe
Confidence            77777888754  35778887666543221111110    111222 23566666654 3   45778888752  2221


Q ss_pred             ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc--eEeeccCCCCeEEEEEccCCcEEEeeecCC----
Q psy2305         150 RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNGILLFSGARKD----  223 (334)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d----  223 (334)
                      .+ ......... +++ .-++. +.+.|   |.+.+||.++++=  +..+....... +++. -+|+..+.|+ .+    
T Consensus       391 ~~-~m~~~r~~~-~~~-~~~~~-IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG-~~~~~~  460 (480)
T PHA02790        391 GP-STYYPHYKS-CAL-VFGRR-LFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGG-FYRGSY  460 (480)
T ss_pred             CC-CCCCccccc-eEE-EECCE-EEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECC-cCCCcc
Confidence            11 111111111 222 23455 66666   4577888866532  22222111122 2222 2566666666 33    


Q ss_pred             -CeEEEEEccC
Q psy2305         224 -CEIICWDLRN  233 (334)
Q Consensus       224 -~~i~iwd~~~  233 (334)
                       ..+..||..+
T Consensus       461 ~~~ve~Yd~~~  471 (480)
T PHA02790        461 IDTIEVYNNRT  471 (480)
T ss_pred             cceEEEEECCC
Confidence             2355555543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.31  E-value=5.1  Score=34.85  Aligned_cols=147  Identities=8%  Similarity=0.074  Sum_probs=88.4

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCe-----eeEEEcCccccccccceeEEEEc---C--CCCEEEEeeCCcEEEEEcCCCCC
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGE-----IKATYRPYNQVDEVTHAYSLAFS---L--DGNKIYAGFLSEVKIFSTDRPGR  145 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~---~--~~~~l~~~~d~~i~i~d~~~~~~  145 (334)
                      +...|++|+..|.++||+...+.     .+-..+.. .     +|..+..-   +  +...||+-.-..+.+|.+.....
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~-~-----PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g  109 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK-D-----PILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDG  109 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecC-C-----cEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCC
Confidence            45689999999999999985443     22222211 1     66666543   2  33466666688899998843221


Q ss_pred             e------eeeeccccccccc--ceEEEEEcC----CCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC
Q psy2305         146 E------CVSRNLKPWFRKN--IVSAIAINP----VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG  213 (334)
Q Consensus       146 ~------~~~~~~~~~~~~~--~v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  213 (334)
                      .      ....  ....|.-  ....++.-|    .++.++.+-+.||.+.+|+-+.-.....+.. ---...+.|.|.-
T Consensus       110 ~~~~g~~~~L~--~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~t  186 (418)
T PF14727_consen  110 TVEHGNQYQLE--LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRT  186 (418)
T ss_pred             CcccCcEEEEE--EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecC
Confidence            1      1110  2233322  222333322    2234888899999999999765433333332 1112247888888


Q ss_pred             cEEEeeecCCCeEEEEEcc
Q psy2305         214 ILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       214 ~~l~~~~~~d~~i~iwd~~  232 (334)
                      ..|++++ .+..+.-|...
T Consensus       187 Dsfvt~s-ss~~l~~Yky~  204 (418)
T PF14727_consen  187 DSFVTAS-SSWTLECYKYQ  204 (418)
T ss_pred             CEEEEec-CceeEEEecHH
Confidence            8888888 78888888764

>PRK13684 Ycf48-like protein; Provisional

Probab=93.28  E-value=4.5  Score=34.17  Aligned_cols=150  Identities=9%  Similarity=-0.057  Sum_probs=79.7

Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEE-ECCCCCceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLF-SDSDGRPLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG  235 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~-d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~  235 (334)
                      ...+.++.+.|++. +++++ ..|.+..- | ..++.-... ......++++.+.|+++.++++.  .|.+++=..+. +
T Consensus       172 ~g~~~~i~~~~~g~-~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~--~G~~~~~s~d~-G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGK-YVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR--GGQIRFNDPDD-L  245 (334)
T ss_pred             cceEEEEEECCCCe-EEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec--CCEEEEccCCC-C
Confidence            45788999999986 66554 45655432 2 122222222 23346788999999998777664  67665322222 3


Q ss_pred             ccceeeccc--ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCC
Q psy2305         236 CILHTFPRQ--VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHK  313 (334)
Q Consensus       236 ~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~  313 (334)
                      ..-......  .....+..+.+.|++..++++ .+|.+. .....++.         |+.......-....+.+.|  ..
T Consensus       246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~t---------W~~~~~~~~~~~~~~~~~~--~~  312 (334)
T PRK13684        246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKT---------WEKDPVGEEVPSNFYKIVF--LD  312 (334)
T ss_pred             CccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCC---------CeECCcCCCCCcceEEEEE--eC
Confidence            222211111  012345678888888766655 567554 34444421         1222111111235677888  65


Q ss_pred             CcccceeeEEeeecceee
Q psy2305         314 FERDLLVADATCSGQITN  331 (334)
Q Consensus       314 ~~~~~~~~l~t~~~d~~i  331 (334)
                      ++    +.++ .+..|.|
T Consensus       313 ~~----~~~~-~G~~G~i  325 (334)
T PRK13684        313 PE----KGFV-LGQRGVL  325 (334)
T ss_pred             CC----ceEE-ECCCceE
Confidence            55    5544 5555554

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.55  E-value=0.85  Score=39.11  Aligned_cols=157  Identities=16%  Similarity=0.154  Sum_probs=89.0

Q ss_pred             ceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccccccccc----ceE-EEEEcCCCCcEEEEeecCCeEEEE-E
Q psy2305         114 HAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKN----IVS-AIAINPVHPDICALGTYSKIIGLF-S  187 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~l~~~~~dg~i~i~-d  187 (334)
                      .|..+-..|||+.|+.-+..++.++++..  +....+.+ .....+    .|+ .+..-..|. -++.++.||-|.-| |
T Consensus       222 ~v~qllL~Pdg~~LYv~~g~~~~v~~L~~--r~l~~rkl-~~dspg~~~~~Vte~l~lL~Gg~-SLLv~~~dG~vsQWFd  297 (733)
T COG4590         222 DVSQLLLTPDGKTLYVRTGSELVVALLDK--RSLQIRKL-VDDSPGDSRHQVTEQLYLLSGGF-SLLVVHEDGLVSQWFD  297 (733)
T ss_pred             chHhhEECCCCCEEEEecCCeEEEEeecc--cccchhhh-hhcCCCchHHHHHHHHHHHhCce-eEEEEcCCCceeeeee
Confidence            57788899999999877768899999884  33322111 111111    122 122223444 56778888888766 5


Q ss_pred             CCCC-Cc----eEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceE
Q psy2305         188 DSDG-RP----LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYL  262 (334)
Q Consensus       188 ~~~~-~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l  262 (334)
                      .+.+ .+    ++.++-...++..+.-..+.+-+++-. ..|++.++.... .+.+. +..-  -....-+++||.+.++
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~-~~G~L~~f~st~-~~~lL-~~~~--~~~~~~~~~Sp~~~~L  372 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLY-RNGTLQSFYSTS-EKLLL-FERA--YQAPQLVAMSPNQAYL  372 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEc-CCCceeeeeccc-Cccee-hhhh--hcCcceeeeCcccchh
Confidence            5432 21    222222223333333333445666777 688887776554 22211 1111  1123346789999999


Q ss_pred             EeeecCCcEEEEeCCCCC
Q psy2305         263 LSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       263 ~~~~~dg~i~iwd~~~~~  280 (334)
                      ++- ..|.++++.+++..
T Consensus       373 l~e-~~gki~~~~l~Nr~  389 (733)
T COG4590         373 LSE-DQGKIRLAQLENRN  389 (733)
T ss_pred             eee-cCCceEEEEecCCC
Confidence            875 35789999998763

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.10  E-value=5.6  Score=32.35  Aligned_cols=195  Identities=13%  Similarity=0.098  Sum_probs=109.6

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      +..+.++  +++.+.+..+.-++|.|+.+....               ++.+.-.-.=+...|       .-.|++..++
T Consensus        89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP---------------~~~~~lnt~gyaygv-------~vsGn~aYVa  144 (370)
T COG5276          89 FADVRVS--EEYVYVADWSSGLRIVDISTPDSP---------------TLIGFLNTDGYAYGV-------YVSGNYAYVA  144 (370)
T ss_pred             hheeEec--ccEEEEEcCCCceEEEeccCCCCc---------------ceeccccCCceEEEE-------EecCCEEEEe
Confidence            3445555  446666666677999999877653               222211111122222       2367888887


Q ss_pred             eCCCcEEEEeCCCCe---eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          84 SMYAPIHLWDSVGGE---IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ..|.-+.+.|+.+.+   +...+.....     ..+.++.|  |++-..+. |+-+.+.|+..+..+...   .......
T Consensus       145 dlddgfLivdvsdpssP~lagrya~~~~-----d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli---~~~n~g~  214 (370)
T COG5276         145 DLDDGFLIVDVSDPSSPQLAGRYALPGG-----DTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLI---GSYNTGP  214 (370)
T ss_pred             eccCcEEEEECCCCCCceeeeeeccCCC-----CceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEE---EEEecCC
Confidence            756557777876543   2333322221     23456665  55666554 899999999875554432   1222233


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC-CCCeEEE-EEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-NGGITHL-EFSSNGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~-~~~~~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      .+.++..+++.. +++.  .+.-+.+-|....+....+... ...+.++ .+.-.+++.+.+. .+.-+-+-|+.++..
T Consensus       215 g~~sv~vsdnr~-y~vv--y~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvad-ga~gl~~idisnp~s  289 (370)
T COG5276         215 GTYSVSVSDNRA-YLVV--YDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVAD-GAKGLPIIDISNPPS  289 (370)
T ss_pred             ceEEEEecCCee-EEEE--cccceEEEecCCCCCceEeeccccCCcccccceecccceeeeec-cccCceeEeccCCCC
Confidence            677888887754 4443  3556777787666544444211 1122222 2333466777777 677788888876444

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.05  E-value=1.1  Score=24.08  Aligned_cols=31  Identities=10%  Similarity=0.037  Sum_probs=23.3

Q ss_pred             CCCcEEEEee-CCCcEEEEeCCCCeeeEEEcC
Q psy2305          75 GFTSYFLCSS-MYAPIHLWDSVGGEIKATYRP  105 (334)
Q Consensus        75 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~  105 (334)
                      |+++.|+++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            4666655544 578999999999888887765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA02790 Kelch-like protein; Provisional

Probab=92.03  E-value=8.7  Score=34.39  Aligned_cols=184  Identities=9%  Similarity=-0.053  Sum_probs=84.6

Q ss_pred             CCcEEEEeeCCC-----cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C--CcEEEEEcCCCCCee
Q psy2305          76 FTSYFLCSSMYA-----PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L--SEVKIFSTDRPGREC  147 (334)
Q Consensus        76 ~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d--~~i~i~d~~~~~~~~  147 (334)
                      ++.++++|+.++     .+..||..+++....-......    .-.+++ .-++...+.|+ +  ..+..||..+ + ..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r----~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~-n-~W  343 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR----LYASGV-PANNKLYVVGGLPNPTSVERWFHGD-A-AW  343 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh----hcceEE-EECCEEEEECCcCCCCceEEEECCC-C-eE
Confidence            556677777543     4667888776543322211110    111222 23566666665 3  4678888764 2 22


Q ss_pred             eeecccccccccceEEEEEcCCCCcEEEEeecCC---eEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEEEeeecC
Q psy2305         148 VSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK---IIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILLFSGARK  222 (334)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~  222 (334)
                      ...+ .+.........+  .-+|+ +.+.|+.++   .+..||.++.+=..  .+....... +++ .-+++..+.|+  
T Consensus       344 ~~~~-~l~~~r~~~~~~--~~~g~-IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG--  415 (480)
T PHA02790        344 VNMP-SLLKPRCNPAVA--SINNV-IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR--  415 (480)
T ss_pred             EECC-CCCCCCcccEEE--EECCE-EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC--
Confidence            2111 111111111122  23565 777777653   46788876543211  111111111 221 23555555554  


Q ss_pred             CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305         223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS  279 (334)
Q Consensus       223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  279 (334)
                        ...+||..+ .+- ..+..-.....-..++ .-+|+..+.|+.+     ..+..||..+.
T Consensus       416 --~~e~ydp~~-~~W-~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        416 --NAEFYCESS-NTW-TLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             --ceEEecCCC-CcE-eEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence              356788765 221 1111110111111122 2367788888754     35777777764

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.97  E-value=0.93  Score=24.38  Aligned_cols=41  Identities=7%  Similarity=0.072  Sum_probs=26.3

Q ss_pred             CCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEE
Q psy2305         168 PVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEF  209 (334)
Q Consensus       168 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  209 (334)
                      |+++.++++...++.|.++|..+++.+..+... .....+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            566634444556789999999888877776542 22334444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=91.97  E-value=1.7  Score=28.41  Aligned_cols=42  Identities=12%  Similarity=0.042  Sum_probs=29.7

Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF  131 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (334)
                      ..+|.+..||..+++....+....      ..+.+++++|+.+++.+.
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L~------fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGLY------FPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEES------SEEEEEE-TTSSEEEEEE
T ss_pred             CCCcCEEEEECCCCeEEEehhCCC------ccCeEEEcCCCCEEEEEe
Confidence            345889999999987655554433      568999999999888774

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.71  E-value=7.7  Score=33.15  Aligned_cols=207  Identities=12%  Similarity=0.147  Sum_probs=106.5

Q ss_pred             CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE--EEEee-CC--
Q psy2305          12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY--FLCSS-MY--   86 (334)
Q Consensus        12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~--l~~~~-~d--   86 (334)
                      ...+++....++-+.+||+...+..               .+....-+.| ++.+.   +.+  +|+.  |+.++ ++  
T Consensus        67 ~kSlIigTdK~~GL~VYdL~Gk~lq---------------~~~~Gr~NNV-Dvryg---f~l--~g~~vDlavas~R~~g  125 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDGKELQ---------------SLPVGRPNNV-DVRYG---FPL--NGKTVDLAVASDRSDG  125 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS-EEE---------------EE-SS-EEEE-EEEEE---EEE--TTEEEEEEEEEE-CCC
T ss_pred             ccceEEEEeCCCCEEEEcCCCcEEE---------------eecCCCccee-eeecc---eec--CCceEEEEEEecCcCC
Confidence            4456777778888999999987654               2222111222 22221   111  3443  44443 32  


Q ss_pred             -CcEEEEeCC--CCeeeEEEcCccc--cccccceeEEEEc--C-CCCEEE-Eee-CCcEEEEEcCCCCC-eeeeeccccc
Q psy2305          87 -APIHLWDSV--GGEIKATYRPYNQ--VDEVTHAYSLAFS--L-DGNKIY-AGF-LSEVKIFSTDRPGR-ECVSRNLKPW  155 (334)
Q Consensus        87 -~~i~iwd~~--~~~~~~~~~~~~~--~~~~~~v~~~~~~--~-~~~~l~-~~~-d~~i~i~d~~~~~~-~~~~~~~~~~  155 (334)
                       ..|++|.+.  ++.. ..+....+  ......++.+++-  + +|.+.+ ... +|.+..|.+...+. .+....+...
T Consensus       126 ~n~l~~f~id~~~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f  204 (381)
T PF02333_consen  126 RNSLRLFRIDPDTGEL-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF  204 (381)
T ss_dssp             T-EEEEEEEETTTTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE
T ss_pred             CCeEEEEEecCCCCcc-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe
Confidence             468898654  4443 33322111  0111146677763  3 455444 444 89888888863222 1111111112


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-----CceEeecc--CCCCeEEEEEc--cCCc-EEEeeecCCCe
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-----RPLFFLKG--HNGGITHLEFS--SNGI-LLFSGARKDCE  225 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~--~~~~i~~~~~~--~~~~-~l~~~~~~d~~  225 (334)
                      .-...+..+....... .|+.+-++.-|.-|+.+..     +.+....+  ....|..|++-  ++++ ||++++..+++
T Consensus       205 ~~~sQ~EGCVVDDe~g-~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~s  283 (381)
T PF02333_consen  205 KVGSQPEGCVVDDETG-RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNS  283 (381)
T ss_dssp             E-SS-EEEEEEETTTT-EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred             cCCCcceEEEEecccC-CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCe
Confidence            2344678888888777 8999999998988888532     22222222  34567788774  3443 67776657889


Q ss_pred             EEEEEccCCCccceee
Q psy2305         226 IICWDLRNPGCILHTF  241 (334)
Q Consensus       226 i~iwd~~~~~~~~~~~  241 (334)
                      ..+|+...+...+..|
T Consensus       284 f~Vy~r~~~~~~~g~f  299 (381)
T PF02333_consen  284 FAVYDREGPNAYVGSF  299 (381)
T ss_dssp             EEEEESSTT--EEEEE
T ss_pred             EEEEecCCCCcccceE
Confidence            9999988533333333

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=91.44  E-value=6.1  Score=31.47  Aligned_cols=126  Identities=10%  Similarity=0.062  Sum_probs=66.8

Q ss_pred             eecCCCcEEEEeeC-C--CcEEEEeCCC--CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-CcEEEEEcCCCC
Q psy2305          72 SIDGFTSYFLCSSM-Y--APIHLWDSVG--GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-SEVKIFSTDRPG  144 (334)
Q Consensus        72 ~~s~~~~~l~~~~~-d--~~i~iwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~  144 (334)
                      ++-+||++|.+|+. +  ..+++++..+  +.+.. .+..........-.++..-|||+.|+.|+ . ....+|.-....
T Consensus        73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w-~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~  151 (243)
T PF07250_consen   73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDW-TESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG  151 (243)
T ss_pred             CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCc-eECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCC
Confidence            45789999998874 2  3578887644  01110 01000011111445667778999999876 3 445555543211


Q ss_pred             Ceeeeec-c-ccc--ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC
Q psy2305         145 RECVSRN-L-KPW--FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN  201 (334)
Q Consensus       145 ~~~~~~~-~-~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  201 (334)
                      ......+ + ...  .....---+...|+|+ +|+.+..+  -.|||..+++.++.+..-.
T Consensus       152 ~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~an~~--s~i~d~~~n~v~~~lP~lP  209 (243)
T PF07250_consen  152 PGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIFANRG--SIIYDYKTNTVVRTLPDLP  209 (243)
T ss_pred             CCceeeecchhhhccCccccCceEEEcCCCC-EEEEEcCC--cEEEeCCCCeEEeeCCCCC
Confidence            1111110 0 000  1111223566789999 88877654  4566888777767765433

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG4460|consensus

Probab=90.99  E-value=4.8  Score=35.51  Aligned_cols=74  Identities=14%  Similarity=0.082  Sum_probs=48.9

Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEEC---------CCCCceEee-----------ccCCCCeEEEEEccCC---c
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSD---------SDGRPLFFL-----------KGHNGGITHLEFSSNG---I  214 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~-----------~~~~~~i~~~~~~~~~---~  214 (334)
                      ...|..+..++.|. .++..+.+|-+.++=.         +.++.....           ....-.+..++|+|+.   .
T Consensus       103 ~feV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP  181 (741)
T ss_pred             eEEEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence            34577888999999 8887878886655431         233322111           1112245678899975   4


Q ss_pred             EEEeeecCCCeEEEEEccC
Q psy2305         215 LLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~  233 (334)
                      .|..-+ .|..|++||+..
T Consensus       182 hL~iL~-sdnviRiy~lS~  199 (741)
T KOG4460|consen  182 HLVLLT-SDNVIRIYSLSE  199 (741)
T ss_pred             eEEEEe-cCcEEEEEecCC
Confidence            666667 699999999986

>KOG1983|consensus

Probab=90.94  E-value=11  Score=36.98  Aligned_cols=31  Identities=10%  Similarity=0.184  Sum_probs=25.8

Q ss_pred             eEEEEcCCCcEEEEeeCCCeEEEEECCCCCc
Q psy2305           5 EDVDEAPDGTCLLTNSNDNHLRTFDLPSELH   35 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~   35 (334)
                      ..++|+|...++|.++..|.|++|-...-+.
T Consensus        39 ~~~afD~~q~llai~t~tg~i~~yg~~~ve~   69 (993)
T KOG1983|consen   39 SALAFDPTQGLLAIGTRTGAIKIYGQPGVEF   69 (993)
T ss_pred             cceeeccccceEEEEEecccEEEecccceEE
Confidence            4578999999999999999999997665443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.10  E-value=2.7  Score=38.32  Aligned_cols=37  Identities=11%  Similarity=0.166  Sum_probs=27.7

Q ss_pred             ceEEEEEcC----CCCcEEEEeecCCeEEEEECCCCCceEee
Q psy2305         160 IVSAIAINP----VHPDICALGTYSKIIGLFSDSDGRPLFFL  197 (334)
Q Consensus       160 ~v~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  197 (334)
                      ....+++++    +.. ++++.+.|+++++||+.+++++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~-~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDT-FLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTT-EEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCC-EEEEEeCCCeEEEEECCCCeEEEEe
Confidence            455666666    445 8999999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.03  E-value=13  Score=32.83  Aligned_cols=109  Identities=9%  Similarity=0.062  Sum_probs=59.3

Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc--eEeec-----cCCCCeEEEEEccCC------cEEEeeecC---
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP--LFFLK-----GHNGGITHLEFSSNG------ILLFSGARK---  222 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~-----~~~~~i~~~~~~~~~------~~l~~~~~~---  222 (334)
                      .....|+|.|+|+ +|++--..|.|++++..++..  +..+.     ...+....|+++|+-      .+|+.....   
T Consensus        30 ~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~  108 (454)
T TIGR03606        30 NKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG  108 (454)
T ss_pred             CCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence            4567899999997 666554469999998654432  21111     135668899999874      244443101   


Q ss_pred             ------CCeEEEEEccCCC----ccceeeccc--ccCCceEEEEecCCCceEEeeecC
Q psy2305         223 ------DCEIICWDLRNPG----CILHTFPRQ--VSTNQRVYFDLTSCSNYLLSGNTN  268 (334)
Q Consensus       223 ------d~~i~iwd~~~~~----~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~d  268 (334)
                            ...|.-|.+....    .....+...  ...+.-..+.|.|||.++++.+..
T Consensus       109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                  2234445443211    111112111  112234457899999877755543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=90.01  E-value=14  Score=33.11  Aligned_cols=112  Identities=11%  Similarity=0.012  Sum_probs=53.1

Q ss_pred             EEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCC---eEEEEEccCCcEEEeeec-------------------
Q psy2305         164 IAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG---ITHLEFSSNGILLFSGAR-------------------  221 (334)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~-------------------  221 (334)
                      +...++|. +++...  ..+..+|+ .|+.+.......+.   =..+...|+|++|+.+..                   
T Consensus       153 ~~~l~nG~-ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ive  228 (477)
T PF05935_consen  153 FKQLPNGN-LLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVE  228 (477)
T ss_dssp             EEE-TTS--EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEE
T ss_pred             eeEcCCCC-EEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEE
Confidence            66788997 555333  88899997 46655544321111   134677788888776650                   


Q ss_pred             ---CCCeEEEEEccCCCcccee----------e---cccccCCceEEEEecC-CCceEEeeecCCcEEEEeCCCC
Q psy2305         222 ---KDCEIICWDLRNPGCILHT----------F---PRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       222 ---~d~~i~iwd~~~~~~~~~~----------~---~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                         ....+..||+..--.+...          .   .....-..+.++.+.+ ++.+++++-.-..|...|..++
T Consensus       229 vd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~  303 (477)
T PF05935_consen  229 VDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG  303 (477)
T ss_dssp             E-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred             ECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence               1122444555431111111          0   0011123466788888 6666666665567888887776

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=89.90  E-value=11  Score=35.23  Aligned_cols=218  Identities=11%  Similarity=0.027  Sum_probs=0.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeec-----------------------
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG-----------------------   58 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------   58 (334)
                      +.|-..+||.|.+.++....+..|.+++ ..-..+...........+..+.++.+-+                       
T Consensus       113 nGIvaa~wS~DE~~~cvvt~~r~il~~~-k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~  191 (1243)
T COG5290         113 NGIVAASWSADEKTWCVVTSTREILLFD-KYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYM  191 (1243)
T ss_pred             CceEEEeeccCCceEEEEEcCceEEEEe-ccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCccc


Q ss_pred             ---eeEEEEEEecccceecCCCcEEEEeeCC----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee
Q psy2305          59 ---GIIYDYVWYPKTSSIDGFTSYFLCSSMY----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF  131 (334)
Q Consensus        59 ---~~v~~~~~~~~~~~~s~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (334)
                         +.+.++.-+...+.|-.|.++.+++...    ..+++|. ..|+.-..-.+...     .-..+.|-|+|..+++-.
T Consensus       192 vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvys-reg~lds~sep~~g-----~e~~LSWkpqgS~~ati~  265 (1243)
T COG5290         192 VDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYS-REGQLDSASEPVTG-----MEHQLSWKPQGSKYATIG  265 (1243)
T ss_pred             ccccceeEeeCCceEEEEccCcceeeecchhcccccceeeec-cccccccccCCccc-----chhccccccCCceeeeec


Q ss_pred             -CC-----cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeE
Q psy2305         132 -LS-----EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGIT  205 (334)
Q Consensus       132 -d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~  205 (334)
                       ||     .|.++..+.-..--..   .-.+....+..++|+-... .++ ......+.+|-..+-.-.-.....-..+.
T Consensus       266 td~~~~S~~ViFfErNGLrHGef~---lr~~~dEk~~~~~wn~~s~-vla-v~~~n~~~lwttkNyhWYLK~e~~ip~~s  340 (1243)
T COG5290         266 TDGCSTSESVIFFERNGLRHGEFD---LRVGCDEKAFLENWNLLST-VLA-VAEGNLLKLWTTKNYHWYLKVERQIPGIS  340 (1243)
T ss_pred             cCCCCCcceEEEEccCCcccCCcc---ccCCchhhhhhhhhhHHHH-HHH-HhhcceEEEEEccceEEEEEEeecCCCcc


Q ss_pred             EEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         206 HLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       206 ~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      -+.|+|....-+.-. ..+.|...++.
T Consensus       341 ~vkwhpe~~nTl~f~-d~~~I~~V~f~  366 (1243)
T COG5290         341 YVKWHPEEKNTLLFR-DGERILRVFFS  366 (1243)
T ss_pred             eeeeccccCcEEEEe-cCCeEEEEEee

>KOG3616|consensus

Probab=89.84  E-value=7.4  Score=36.04  Aligned_cols=110  Identities=10%  Similarity=0.195  Sum_probs=62.1

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .+.++.-+|.|+.++.+..||.|++|++......                       .|+..+-.|..+.|...|  |++
T Consensus        16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs-----------------------ki~~~~~p~~nlv~tnhg--l~~   70 (1636)
T KOG3616|consen   16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS-----------------------KICEEAKPKENLVFTNHG--LVT   70 (1636)
T ss_pred             eeeeeeecCCCceEEEEecCCcEEEEeecccchh-----------------------hhhhhcCCccceeeeccc--eEE
Confidence            4678888899999999999999999998765542                       111111111112223333  566


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFST  140 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~  140 (334)
                      +..|..+.-|. +.|...+.|.-...+..  ...++...|..+.++..--|-|.-+|.
T Consensus        71 ~tsdrr~la~~-~dgvvqqqfdyndqsek--efss~~cdptaqnvvgtlcggv~q~dc  125 (1636)
T KOG3616|consen   71 ATSDRRALAWK-EDGVVQQQFDYNDQSEK--EFSSILCDPTAQNVVGTLCGGVEQFDC  125 (1636)
T ss_pred             Eeccchhheee-ccCcchhhccccchhhh--hccceecCchhhhhhhhhccceeeehH
Confidence            66677777786 35554444443222211  345566666655554222344444553

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.67  E-value=8.1  Score=29.93  Aligned_cols=102  Identities=9%  Similarity=0.115  Sum_probs=60.4

Q ss_pred             CEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCC------eEEEE---ECC--CCCc
Q psy2305         125 NKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK------IIGLF---SDS--DGRP  193 (334)
Q Consensus       125 ~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~i~---d~~--~~~~  193 (334)
                      .++++.+.+.|.+|++.........    ....-+.|..+.++..|+ ++++--.+.      .+++|   +..  ..++
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~----~F~Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~  104 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLC----TFSTVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP  104 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeE----EEcchhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence            3444455788999999843333332    233347899999999999 888754332      45654   221  1122


Q ss_pred             eE-eeccC---------------------CCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         194 LF-FLKGH---------------------NGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       194 ~~-~~~~~---------------------~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      +. .+-||                     ..++.+++.-|-.--|++|+  ++.+.+|.+..
T Consensus       105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~  164 (215)
T PF14761_consen  105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKY  164 (215)
T ss_pred             EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEE
Confidence            22 22222                     23455666666433455665  77899998874

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.57  E-value=8.2  Score=29.89  Aligned_cols=108  Identities=10%  Similarity=0.110  Sum_probs=61.0

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC---C---
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY---A---   87 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d---~---   87 (334)
                      ..|+.+...+.|.+|++......              .......-+.|..+.+       +..|++|++--.+   .   
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~--------------~~~~F~Tv~~V~~l~y-------~~~GDYlvTlE~k~~~~~~~   87 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECP--------------LLCTFSTVGRVLQLVY-------SEAGDYLVTLEEKNKRSPVD   87 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCc--------------eeEEEcchhheeEEEe-------ccccceEEEEEeecCCccce
Confidence            44544456678999999844432              1222223367777777       6689999985332   1   


Q ss_pred             cEEEE---eCC--CCeeeE-EEcCcccc-------c---------cccceeEEEEcCCCCEEEEeeCCcEEEEEcCC
Q psy2305          88 PIHLW---DSV--GGEIKA-TYRPYNQV-------D---------EVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDR  142 (334)
Q Consensus        88 ~i~iw---d~~--~~~~~~-~~~~~~~~-------~---------~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~  142 (334)
                      .+++|   ...  ....++ .+-++.-.       .         -..++.+++-.|-.-.|+.|.++.+.+|.+..
T Consensus        88 fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~  164 (215)
T PF14761_consen   88 FVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY  164 (215)
T ss_pred             EEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence            45664   221  111111 11110000       0         01156788888876667888888999998864

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.45  E-value=9.5  Score=30.44  Aligned_cols=143  Identities=14%  Similarity=0.177  Sum_probs=76.2

Q ss_pred             EEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--C--CcEEEEEcCCCCCe--eeeecccccccccceE
Q psy2305          89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--L--SEVKIFSTDRPGRE--CVSRNLKPWFRKNIVS  162 (334)
Q Consensus        89 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d--~~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~  162 (334)
                      -.+||+.+++... +.....    ..+.+-.+.+||++|.+|+  +  ..+++++.......  ..... ..-.....--
T Consensus        48 s~~yD~~tn~~rp-l~v~td----~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~-~~m~~~RWYp  121 (243)
T PF07250_consen   48 SVEYDPNTNTFRP-LTVQTD----TFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESP-NDMQSGRWYP  121 (243)
T ss_pred             EEEEecCCCcEEe-ccCCCC----CcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECc-ccccCCCccc
Confidence            3589998876543 222111    0445567889999999885  3  46888886531111  11000 0112233444


Q ss_pred             EEEEcCCCCcEEEEeecCC-eEEEEECCC-CCceEe---ecc-----CCCCeEEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         163 AIAINPVHPDICALGTYSK-IIGLFSDSD-GRPLFF---LKG-----HNGGITHLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg-~i~i~d~~~-~~~~~~---~~~-----~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      .+..-|||+ .|+.|+... +..+|.-+. ......   +..     ...---.+...|+|+.++.+. .+  -.|||..
T Consensus       122 T~~~L~DG~-vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an-~~--s~i~d~~  197 (243)
T PF07250_consen  122 TATTLPDGR-VLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN-RG--SIIYDYK  197 (243)
T ss_pred             cceECCCCC-EEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc-CC--cEEEeCC
Confidence            566778999 888877664 344554322 111111   110     011112456689999998887 44  3456877


Q ss_pred             CCCccceeec
Q psy2305         233 NPGCILHTFP  242 (334)
Q Consensus       233 ~~~~~~~~~~  242 (334)
                      . .+.++.+.
T Consensus       198 ~-n~v~~~lP  206 (243)
T PF07250_consen  198 T-NTVVRTLP  206 (243)
T ss_pred             C-CeEEeeCC
Confidence            6 44444444

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=89.15  E-value=16  Score=32.69  Aligned_cols=153  Identities=14%  Similarity=0.107  Sum_probs=75.6

Q ss_pred             CCcEEEEe---eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecc
Q psy2305          76 FTSYFLCS---SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        76 ~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      ++-+++..   ...+...+.|. .|..+..+......     ...+...++|.+++... ..+..+|+.  |+...... 
T Consensus       114 ~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~-----~~~~~~l~nG~ll~~~~-~~~~e~D~~--G~v~~~~~-  183 (477)
T PF05935_consen  114 DGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGS-----DNSFKQLPNGNLLIGSG-NRLYEIDLL--GKVIWEYD-  183 (477)
T ss_dssp             T-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT-------SSEEE-TTS-EEEEEB-TEEEEE-TT----EEEEEE-
T ss_pred             CcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccc-----cceeeEcCCCCEEEecC-CceEEEcCC--CCEEEeee-
Confidence            33345554   24556778885 67776666543321     11267788888776444 778888887  66555322 


Q ss_pred             ccccc-ccceEEEEEcCCCCcEEEEeec-------------CCeEEEEECCCCCceEeec--cCC---------------
Q psy2305         153 KPWFR-KNIVSAIAINPVHPDICALGTY-------------SKIIGLFSDSDGRPLFFLK--GHN---------------  201 (334)
Q Consensus       153 ~~~~~-~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~--~~~---------------  201 (334)
                       +... ...-+.+..-|+|+ +|+.+..             .-.|..+| .+|+.+..+.  .|-               
T Consensus       184 -l~~~~~~~HHD~~~l~nGn-~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~  260 (477)
T PF05935_consen  184 -LPGGYYDFHHDIDELPNGN-LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGD  260 (477)
T ss_dssp             ---TTEE-B-S-EEE-TTS--EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSS
T ss_pred             -cCCcccccccccEECCCCC-EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccc
Confidence             2221 12234677889998 7776662             12355666 6666554431  010               


Q ss_pred             ----------CCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeec
Q psy2305         202 ----------GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP  242 (334)
Q Consensus       202 ----------~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~  242 (334)
                                --+.++.+.+....|+..+|.-..|...|.++ ++....+.
T Consensus       261 ~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t-~~i~Wilg  310 (477)
T PF05935_consen  261 ISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT-GKIKWILG  310 (477)
T ss_dssp             SS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT-S-EEEEES
T ss_pred             cccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC-CcEEEEeC
Confidence                      12678999995555555555677888888666 55554444

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=88.78  E-value=4.6  Score=38.32  Aligned_cols=80  Identities=10%  Similarity=0.107  Sum_probs=51.6

Q ss_pred             CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEe-eecCCC-----eEEEEEccCCCccceeecccccCCceEEE
Q psy2305         180 SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFS-GARKDC-----EIICWDLRNPGCILHTFPRQVSTNQRVYF  253 (334)
Q Consensus       180 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  253 (334)
                      .+.|.+-|.....+...-..+..+|.+.+|||||+.|+. .+ .++     .|++-|+++.+.-+.++.-.  ...|...
T Consensus       328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts-~e~~~g~s~vYv~~L~t~~~~~vkl~ve--~aaiprw  404 (912)
T TIGR02171       328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTG-IEGLPGKSSVYVRNLNASGSGLVKLPVE--NAAIPRW  404 (912)
T ss_pred             CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEe-ecCCCCCceEEEEehhccCCCceEeecc--cccccce
Confidence            458888887655544431346888999999999999988 44 343     58899998766555555433  3333334


Q ss_pred             EecCCCceE
Q psy2305         254 DLTSCSNYL  262 (334)
Q Consensus       254 ~~s~~~~~l  262 (334)
                      ...++|..+
T Consensus       405 rv~e~gdt~  413 (912)
T TIGR02171       405 RVLENGDTV  413 (912)
T ss_pred             EecCCCCeE
Confidence            445666543

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=88.48  E-value=4  Score=26.47  Aligned_cols=51  Identities=6%  Similarity=0.051  Sum_probs=33.8

Q ss_pred             CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         180 SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       180 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      -+.|..||..+   .+.....-.....+.++|++++|++++...+.|++|..+.
T Consensus        35 ~~~Vvyyd~~~---~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   35 WGNVVYYDGKE---VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CceEEEEeCCE---eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            34566666432   2222222234568999999999988875678999998753

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.18  E-value=2.8  Score=38.24  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=24.9

Q ss_pred             eEEEEecC----CCceEEeeecCCcEEEEeCCCCCC
Q psy2305         250 RVYFDLTS----CSNYLLSGNTNGDLSIWNVNTSNL  281 (334)
Q Consensus       250 ~~~~~~s~----~~~~l~~~~~dg~i~iwd~~~~~~  281 (334)
                      ....++++    +..+|++.+.|+++|+||+.++..
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            44455556    678999999999999999999865

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=88.05  E-value=17  Score=31.59  Aligned_cols=146  Identities=10%  Similarity=0.011  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEE-EEECCCCCce-E-eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc-
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIG-LFSDSDGRPL-F-FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC-  236 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~-~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~-  236 (334)
                      ...+..++++. +++.+. .|.+. -||  .+... . .-......+.++.+.+++..++++.  .|.+..=+ .. +. 
T Consensus       241 f~~v~~~~dG~-~~~vg~-~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~--~G~l~~S~-d~-G~~  312 (398)
T PLN00033        241 FSTVNRSPDGD-YVAVSS-RGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTR--GGGLYVSK-GT-GLT  312 (398)
T ss_pred             eeeEEEcCCCC-EEEEEC-CccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeC--CceEEEec-CC-CCc
Confidence            44566778887 666554 44433 344  23221 1 1122345688999999998887664  66654432 22 32 


Q ss_pred             ----cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccC
Q psy2305         237 ----ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHH  312 (334)
Q Consensus       237 ----~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s  312 (334)
                          .............+..+.|.+++..+++| ..|.+.... ..++.         |+....-..-....+.+.|  .
T Consensus       313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~t---------W~~~~~~~~~~~~ly~v~f--~  379 (398)
T PLN00033        313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKS---------WKRDKGADNIAANLYSVKF--F  379 (398)
T ss_pred             ccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcc---------eeEccccCCCCcceeEEEE--c
Confidence                12222221122347778888887776665 577665553 44421         1222111222346788998  7


Q ss_pred             CCcccceeeEEeeecceeee
Q psy2305         313 KFERDLLVADATCSGQITNV  332 (334)
Q Consensus       313 ~~~~~~~~~l~t~~~d~~i~  332 (334)
                      +++    + ....+.+|.|-
T Consensus       380 ~~~----~-g~~~G~~G~il  394 (398)
T PLN00033        380 DDK----K-GFVLGNDGVLL  394 (398)
T ss_pred             CCC----c-eEEEeCCcEEE
Confidence            666    4 45556666653

>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]

Probab=87.62  E-value=23  Score=33.76  Aligned_cols=141  Identities=12%  Similarity=0.115  Sum_probs=77.0

Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEE-cCCC--------CEEEEeeCCcEEEEEcCCCC--Cee--eee
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAF-SLDG--------NKIYAGFLSEVKIFSTDRPG--REC--VSR  150 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~--------~~l~~~~d~~i~i~d~~~~~--~~~--~~~  150 (334)
                      +.|+.+.+|+..++...+.+....|     .|..++. -|..        +.|+.+....+.++-+....  ..+  ...
T Consensus        99 T~dnkLiLWnynn~neyq~idd~sh-----tIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnT  173 (1263)
T COG5308          99 TNDNKLILWNYNNSNEYQEIDDFSH-----TILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNT  173 (1263)
T ss_pred             EcCCEEEEEecCCCcchhhhhhhhh-----heeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEec
Confidence            3578899999987766555554444     3333332 2221        22333333444444332211  011  000


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC--------CCce----------------EeeccCCCCeEE
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD--------GRPL----------------FFLKGHNGGITH  206 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--------~~~~----------------~~~~~~~~~i~~  206 (334)
                      .+......-.|.|+.-+.+|+ .+.+|..|  +.+|.+.-        .++-                ..+.-|...|..
T Consensus       174 gl~vsvqGinV~civs~e~Gr-IFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Q  250 (1263)
T COG5308         174 GLVVSVQGINVRCIVSEEDGR-IFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQ  250 (1263)
T ss_pred             ceEEeccCceeEEEEeccCCc-EEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhh
Confidence            001222345688888888898 88877666  66666521        0110                011234567778


Q ss_pred             EEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         207 LEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       207 ~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      ++.......|.+-. ....|+-|.+..
T Consensus       251 l~vDqsRg~ly~Lr-~kS~Vray~itk  276 (1263)
T COG5308         251 LAVDQSRGLLYVLR-KKSAVRAYSITK  276 (1263)
T ss_pred             eeecccccceeeec-ccceeeeEeeec
Confidence            88877666787777 788888888765

>PLN02153 epithiospecifier protein

Probab=86.87  E-value=18  Score=30.64  Aligned_cols=25  Identities=16%  Similarity=0.173  Sum_probs=16.8

Q ss_pred             CCcEEEEeeCC-----CcEEEEeCCCCeee
Q psy2305          76 FTSYFLCSSMY-----APIHLWDSVGGEIK  100 (334)
Q Consensus        76 ~~~~l~~~~~d-----~~i~iwd~~~~~~~  100 (334)
                      ++++++.|+.+     ..+.+||+.+.+..
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~  114 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWT  114 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence            56677777653     35778898776543

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=86.25  E-value=2.6  Score=20.44  Aligned_cols=26  Identities=19%  Similarity=0.422  Sum_probs=19.2

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTF   28 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw   28 (334)
                      ....++.+++|+.+++-+....|++|
T Consensus         3 ~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    3 YPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            45678888888877777777777764

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG3522|consensus

Probab=86.13  E-value=13  Score=34.96  Aligned_cols=138  Identities=14%  Similarity=0.091  Sum_probs=80.4

Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEE--------EEcCCCCCeeee
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKI--------FSTDRPGRECVS  149 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i--------~d~~~~~~~~~~  149 (334)
                      .+..++.++.+.++.-..+....... +....+...+.++.+++..  +..|. ||++-.        ||.. +..    
T Consensus       549 Tic~gtq~ssisissss~~s~ke~~~-~~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~gSwd~e-p~~----  620 (925)
T KOG3522|consen  549 TICLGTQTSSISISSSSLDSIKEVTS-EPPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYGRAPSGSWDGE-PNI----  620 (925)
T ss_pred             cccccCccceeEEeeccCCcccceec-cCCCCchhhhhhhhccccc--cccCccCCccccccCCCCCCCCCC-Ccc----
Confidence            47788889999998755222211111 1111222256666666532  22222 444433        5543 111    


Q ss_pred             ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec---cCCCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305         150 RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK---GHNGGITHLEFSSNGILLFSGARKDCEI  226 (334)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~d~~i  226 (334)
                         .......+|.+.++..+    ++.++.+|.|.++...+......+.   .|...|+++.+..+|-+++.++  ...+
T Consensus       621 ---~~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafas--G~~~  691 (925)
T KOG3522|consen  621 ---SIPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFAS--GDEE  691 (925)
T ss_pred             ---ccccCCccccchhhhhc----eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcC--CCEE
Confidence               22334567888887765    3447789999999987765555443   3556899999998887777666  3455


Q ss_pred             EEEEccC
Q psy2305         227 ICWDLRN  233 (334)
Q Consensus       227 ~iwd~~~  233 (334)
                      ++++..+
T Consensus       692 rlfhtet  698 (925)
T KOG3522|consen  692 RLFHTET  698 (925)
T ss_pred             EEecccc
Confidence            6655554

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=86.06  E-value=3.3  Score=21.84  Aligned_cols=30  Identities=10%  Similarity=-0.006  Sum_probs=18.6

Q ss_pred             cccceEEEEEcCCCCcEEEEeecC--CeEEEE
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYS--KIIGLF  186 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~  186 (334)
                      ....-....|+|||+.++.+...+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344667889999999444455555  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG1896|consensus

Probab=85.57  E-value=40  Score=33.42  Aligned_cols=140  Identities=12%  Similarity=0.057  Sum_probs=80.3

Q ss_pred             CcEEEEEcCC----CCCeeeeec---ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEEC-CCCCceEeeccCCCCe
Q psy2305         133 SEVKIFSTDR----PGRECVSRN---LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSD-SDGRPLFFLKGHNGGI  204 (334)
Q Consensus       133 ~~i~i~d~~~----~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~i  204 (334)
                      |.+.+||+-.    ++++.....   +.....++.|..++= -+|  +|+++ ...+|.+|++ +....+..-. -.-++
T Consensus      1065 Gr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G--~l~~~-~GqKI~v~~l~r~~~ligVaF-iD~~~ 1139 (1366)
T KOG1896|consen 1065 GRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG--HLLSS-QGQKIIVRKLDRDSELIGVAF-IDLPL 1139 (1366)
T ss_pred             ccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc--EEEEc-cCcEEEEEEeccCCcceeeEE-eccce
Confidence            7899999643    333322111   123445677766653 345  46654 4678999999 4443332211 12223


Q ss_pred             EEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCc--eEEeeecCCcEEEEeCCC
Q psy2305         205 THLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN--YLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       205 ~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~dg~i~iwd~~~  278 (334)
                      .-....--+++|+.|. --..|.+.-.......+..+......-.+.+..|--+|.  +++++..++.|++|-...
T Consensus      1140 yv~s~~~vknlIl~gD-V~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1140 YVHSMKVVKNLILAGD-VMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred             eEEehhhhhhheehhh-hhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCC
Confidence            3333333355777776 567777777765344444555554555666666666664  567888899999986654

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=84.78  E-value=20  Score=29.33  Aligned_cols=189  Identities=13%  Similarity=0.131  Sum_probs=105.6

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      .+++...+..+.-++|.|+.+...-..+...+...   -.+++.  -.|++..++. +.-+.+.|+..+..+...-  ..
T Consensus        95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g---yaygv~--vsGn~aYVadlddgfLivdvsdpssP~lag--ry  167 (370)
T COG5276          95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG---YAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQLAG--RY  167 (370)
T ss_pred             cccEEEEEcCCCceEEEeccCCCCcceeccccCCc---eEEEEE--ecCCEEEEeeccCcEEEEECCCCCCceeee--ee
Confidence            45677777777789999997765433322211101   233444  4478888777 7778889998766554421  12


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee--ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      ......-..++.+-+   +...+..|+-+.+.|+.+.....-+  ......+.++..+++.-+++...   .-+.+-|..
T Consensus       168 a~~~~d~~~v~ISGn---~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~---egvlivd~s  241 (370)
T COG5276         168 ALPGGDTHDVAISGN---YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD---EGVLIVDVS  241 (370)
T ss_pred             ccCCCCceeEEEecC---eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc---cceEEEecC
Confidence            222333356666644   6666778999999999765322211  11233678888887766666543   346666776


Q ss_pred             CCCccceeecccccCCceEEE-EecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         233 NPGCILHTFPRQVSTNQRVYF-DLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .+.. ...+... ....+.+. .+.-.+++...+..+.-+.+-|+...
T Consensus       242 ~~ss-p~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp  287 (370)
T COG5276         242 GPSS-PTVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP  287 (370)
T ss_pred             CCCC-ceEeecc-ccCCcccccceecccceeeeeccccCceeEeccCC
Confidence            5332 2222211 11111111 22334556655655666666676654

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=84.56  E-value=34  Score=31.74  Aligned_cols=32  Identities=13%  Similarity=0.306  Sum_probs=27.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCC
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSE   33 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~   33 (334)
                      +.|-.+.|.++++.+++.-.+|.|.+||...+
T Consensus       130 ~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~  161 (670)
T PF10395_consen  130 DKVVGIKFSSDGKIIYVVLENGSIQIYDFSEN  161 (670)
T ss_pred             cceEEEEEecCCCEEEEEEcCCcEEEEecccc
Confidence            45788999999999999999999999999433

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.40  E-value=21  Score=29.25  Aligned_cols=118  Identities=11%  Similarity=0.083  Sum_probs=64.5

Q ss_pred             CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee---C----CcEEEEEcCCCCCeeeeecccc-cccc
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---L----SEVKIFSTDRPGRECVSRNLKP-WFRK  158 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d----~~i~i~d~~~~~~~~~~~~~~~-~~~~  158 (334)
                      ..|++||..+.+....-.....     .|+.|.|..+.+.+++|.   +    ..+..||...  .......... ..-.
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G-----~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~~s~~ip   88 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISG-----TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGGSSNSIP   88 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceE-----EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCcccccCC
Confidence            3589999877665543333222     899999997777777763   2    3577888874  3332211000 1224


Q ss_pred             cceEEEEEcC-CCCcEEEEee-cC--CeEEEEECCCCCceEe-eccCCCCeEEEEEcc
Q psy2305         159 NIVSAIAINP-VHPDICALGT-YS--KIIGLFSDSDGRPLFF-LKGHNGGITHLEFSS  211 (334)
Q Consensus       159 ~~v~~~~~~~-~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~  211 (334)
                      ++|..+.+.. ++.++.+.|. .+  ..|..||-.+...+.. .......|..+.+-|
T Consensus        89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence            6788887743 3332444443 23  3467776544433333 222244566655533

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=84.22  E-value=3.4  Score=20.00  Aligned_cols=26  Identities=15%  Similarity=0.244  Sum_probs=20.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFD   29 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~   29 (334)
                      +.|.+++.++.  +++++...+.+|+|.
T Consensus         2 E~i~aia~g~~--~vavaTS~~~lRifs   27 (27)
T PF12341_consen    2 EEIEAIAAGDS--WVAVATSAGYLRIFS   27 (27)
T ss_pred             ceEEEEEccCC--EEEEEeCCCeEEecC
Confidence            45778887754  788888889999984

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	334
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		7e-04

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGIL 215
            R ++ S I       +    G   K+I ++   + + L  L GH+GG+  L+++  GIL
Sbjct: 117 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 216 LFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN--YLLSGNTNGDLSI 273
           + SG+  D  +  WD++  GC  H F    ST +    D+    N  Y+++G+ +  L +
Sbjct: 177 V-SGS-TDRTVRVWDIK-KGCCTHVFEGHNSTVR--CLDIVEYKNIKYIVTGSRDNTLHV 231
Query: 274 WNV 276
           W +
Sbjct: 232 WKL 234

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGIL 215
            R +  S I       +    G   K I ++   + + L  L GH+GG+  L+++  GIL
Sbjct: 117 LRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 216 LFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN--YLLSGNTNGDLSI 273
           + SG+  D  +  WD++  GC  H F    ST +    D+    N  Y+++G+ +  L +
Sbjct: 177 V-SGS-TDRTVRVWDIK-KGCCTHVFEGHNSTVR--CLDIVEYKNIKYIVTGSRDNTLHV 231
Query: 274 WNV 276
           W +
Sbjct: 232 WKL 234

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 79  YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGFLSEVKI 137
           + + SS    + LWD   G    TY+ +  V   +  YS+AFS D  +I  AG   E+K+
Sbjct: 90  FAISSSWDKTLRLWDLRTG---TTYKRF--VGHQSEVYSVAFSPDNRQILSAGAEREIKL 144
Query: 138 FST--DRPGRECVSRNLKPW-----FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD 190
           ++   +         N   W     +   + SA  + P  P   ++G   ++    ++  
Sbjct: 145 WNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ 204
Query: 191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR 250
            R  F  K H   + HL  S NG  + +G  KD +++ WD+ N       F    + NQ 
Sbjct: 205 IRYTF--KAHESNVNHLSISPNGKYIATGG-KDKKLLIWDILNLTYPQREFDAGSTINQI 261
Query: 251 VY 252
            +
Sbjct: 262 AF 263

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	8e-13
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	4e-07
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	1e-04
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	3e-12
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	5e-09
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	3e-05
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	4e-12
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	6e-12
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	2e-11
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	5e-10
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	6e-09
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	1e-07
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	4e-11
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	7e-09
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	6e-08
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	8e-08
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	1e-06
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	7e-11
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	1e-10
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	6e-10
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	5e-10
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	2e-07
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	1e-04
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	5e-09
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	3e-07
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	6e-09
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	1e-05
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	1e-08
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	3e-08
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	7e-06
3ow8_A	321	WD repeat-containing protein 61; structural genomi	2e-08
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	3e-08
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	2e-04
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	8e-04
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	2e-07
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	3e-07
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	3e-04
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	6e-07
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	1e-04
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	7e-04
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	7e-07
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	7e-07
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	8e-07
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	8e-07
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	8e-07
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	2e-05
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	2e-05
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	9e-07
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	2e-05
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	3e-04
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	2e-06
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	2e-06
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	3e-06
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	2e-04
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	3e-04
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	9e-04
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	4e-06
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	3e-04
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	4e-06
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	6e-06
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	6e-06
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-05
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-05
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	2e-04
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	2e-05
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	5e-04
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	5e-04
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	2e-05
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	3e-04
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	5e-04
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	5e-04
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	2e-05
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	4e-05
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	2e-05
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	3e-04
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	3e-05
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	4e-04
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	4e-04
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	3e-05
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	5e-05
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	4e-04
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	4e-05
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	6e-04
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	7e-05
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	1e-04
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	2e-04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	9e-05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	5e-04
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	1e-04
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	6e-04
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	6e-04
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	1e-04
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	2e-04
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	7e-04
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	6e-04
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	6e-04

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 67.9 bits (166), Expect = 8e-13
 Identities = 27/208 (12%), Positives = 58/208 (27%), Gaps = 21/208 (10%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
           I +W+     +   Y      D  +    +    + +       S+   + +   +   +
Sbjct: 88  IKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS--SKDGQIIVLKVNHYQQ 145

Query: 146 ECVSRNLKPWFRK-----------NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL 194
           E   + L     +             V   A       +    T    + +F       L
Sbjct: 146 ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL 205

Query: 195 FFLKG--HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY 252
             ++    +G ++ +       +L  G      I  WD+R    I        +    V 
Sbjct: 206 QIIENSPRHGAVSSICIDEECCVLILGTT-RGIIDIWDIRFNVLIRSWSFGDHAPITHVE 264

Query: 253 FDLTSCSN--YLLSGNTNGDLSIWNVNT 278
                  N   ++ G++   L+IWN   
Sbjct: 265 VCQFYGKNSVIVVGGSSKTFLTIWNFVK 292

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 37/232 (15%), Positives = 70/232 (30%), Gaps = 45/232 (19%)

Query: 89  IHLWDSVGGEIKAT--------YRPYNQVDEVTHAY---SLAFSLDGNKI--YAGFLSEV 135
           I +      + ++          R  N  +   + Y     AF  +   +      LS V
Sbjct: 135 IIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRV 194

Query: 136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF 195
            IF   R       + ++   R   VS+I I+     +  LGT   II ++       + 
Sbjct: 195 IIFDI-RTLER--LQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIR 250

Query: 196 FLK-GHNGGITHLE---FSSNGILLFSGARKDCEIICWDLRNPGCILHTF------PRQV 245
               G +  ITH+E   F     ++  G      +  W+    G   + F      P   
Sbjct: 251 SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSME 309

Query: 246 S-----------------TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280
                             +   +     S    LL+      + ++++N  +
Sbjct: 310 HFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELS 361

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 22/232 (9%), Positives = 55/232 (23%), Gaps = 47/232 (20%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
            +   L+  +    +  +D+                  L  +    +   I  +V   + 
Sbjct: 224 EECCVLILGTTRGIIDIWDIRFN--------------VLIRSWSFGDHAPIT-HVEVCQF 268

Query: 71  SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130
              +      +  S    + +W+ V G  +  +   +  ++ +      F      +   
Sbjct: 269 YGKNSV--IVVGGSSKTFLTIWNFVKGHCQYAFINSD--EQPS---MEHFLPIEKGLEEL 321

Query: 131 FLSEV--------------KIFSTDRPGRECVSRNLKPWFRKNIVSA-----IAINPVHP 171
               +              KI  TD      V  +L        V +         P   
Sbjct: 322 NFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQV 381

Query: 172 DICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSS--NGILLFSGAR 221
                   + ++     +    +     H+  I  +         LL +   
Sbjct: 382 T----ANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN 429

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 51/323 (15%), Positives = 113/323 (34%), Gaps = 38/323 (11%)

Query: 20  SNDNHLRTFDLPSELHCKSVWRPSNQ-RPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS 78
              +    FD     + K  +        K+   +KI   G +    + P+ + +     
Sbjct: 89  QLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACV----- 143

Query: 79  YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTH-----AYSLAFSLDGNKIYAGFLS 133
                +  + + ++D      K       Q D          Y L+++ + N      LS
Sbjct: 144 -IATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY---LLS 199

Query: 134 -----EVKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLF 186
                 + ++  +   +E    + K  F     +V  +A + +H  +       + + ++
Sbjct: 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259

Query: 187 ---SDSDGRPLFFLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGCILHTFP 242
              +++  +P   +  H   +  L F+     +L +G+  D  +  WDLRN    LH+F 
Sbjct: 260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS-ADKTVALWDLRNLKLKLHSFE 318

Query: 243 ---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP--YEESVQEPLYKF 297
               ++    +V +   +    L S  T+  L +W+++      S    E+   E L+  
Sbjct: 319 SHKDEIF---QVQWSPHN-ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH 374

Query: 298 SAHQDCTNGVRWKHHKFERDLLV 320
             H    +   W  +  E  ++ 
Sbjct: 375 GGHTAKISDFSW--NPNEPWIIC 395

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 41/231 (17%)

Query: 116 YSLAFSLDGNKIYAGF--LSEVKIFS-TDRPGRECVSRNLKPWFR----KNIVSAIAINP 168
               +      + A     S+V +F  T  P +   S   +P  R    +     ++ NP
Sbjct: 132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP 191

Query: 169 VHPDICALGTYSKII-------GLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR 221
                    +    I                      GH   +  + +      LF    
Sbjct: 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 251

Query: 222 KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS------NYLLSGNTNGDLSIWN 275
            D +++ WD RN      +      T      ++   S        L +G+ +  +++W+
Sbjct: 252 DDQKLMIWDTRNNNTSKPSHTVDAHTA-----EVNCLSFNPYSEFILATGSADKTVALWD 306

Query: 276 VNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCS 326
           +             ++  L+ F +H+D    V+W        +L   A+  
Sbjct: 307 LRN-----------LKLKLHSFESHKDEIFQVQW--SPHNETIL---ASSG 341

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 25/162 (15%), Positives = 48/162 (29%), Gaps = 29/162 (17%)

Query: 180 SKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238
               G F    G+    +K  H G +    +      + +      +++ +D        
Sbjct: 106 KGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTK----- 160

Query: 239 HTFPRQVSTNQRVYFDLTSCSN-------------YLLSGNTNGDLSIWNVNTSNLPSSP 285
           H    + S   +    L                  YLLS + +  + +W++N      +P
Sbjct: 161 HPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA-----TP 215

Query: 286 YEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG 327
            E  V +    F+ H      V W  H     L     + + 
Sbjct: 216 KEHRVIDAKNIFTGHTAVVEDVAW--HLLHESLF---GSVAD 252

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 65.6 bits (159), Expect = 4e-12
 Identities = 55/383 (14%), Positives = 106/383 (27%), Gaps = 82/383 (21%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSE-------LHCKSVWRPSNQRPKLNYTLKIKEG-GIIY 62
             G  L T      +  F    E           +V+            LK  E    I 
Sbjct: 38  HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN 97

Query: 63  DYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKAT-------------------- 102
              W P+ ++     + FL S+    I LW     + +                      
Sbjct: 98  KIRWLPQKNA-----AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL 152

Query: 103 YRPYNQVDEVT---------------HAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGREC 147
             P  +  ++                H  S++ + D     +     + ++  +   R  
Sbjct: 153 RVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSF 212

Query: 148 VSRNLKPWF---RKNIVSAIAINPVHPDICALGTYSKIIGLF----------------SD 188
              ++KP        +++A   +P   +     +    I L                   
Sbjct: 213 NIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP 272

Query: 189 SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ---V 245
            D     F       I+ ++FS +G  + +  R    +  WDL      + T+       
Sbjct: 273 EDPSNRSFFSEIISSISDVKFSHSGRYMMT--RDYLSVKVWDLNMENRPVETYQVHEYLR 330

Query: 246 STNQRVY-----FDLTSC-----SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY 295
           S    +Y     FD   C      + +++G+ N    +++ NT    +        +P  
Sbjct: 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRT 390

Query: 296 KFSAHQDCTNGVRWKHHKFERDL 318
                + C +G R K       L
Sbjct: 391 VLKPRKVCASGKRKKDEISVDSL 413

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 65.6 bits (160), Expect = 6e-12
 Identities = 40/294 (13%), Positives = 85/294 (28%), Gaps = 49/294 (16%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
            D + + T S D  ++            +W  +  +    +T       +     +    
Sbjct: 667 SDDSYIATCSADKKVK------------IWDSATGKLV--HTYDEHSEQV-NCCHFTN-- 709

Query: 71  SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130
                        S    + LWD    E + T   +   + V       FS D   + + 
Sbjct: 710 ---KSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT--NSVN---HCRFSPDDELLASC 761

Query: 131 FLSE---VKIFSTD--------RPGRECVSRNLKPWFRKNIVSAIAINPVHPD--ICALG 177
             S    ++++              R  +S    P   + IV   +      D     + 
Sbjct: 762 --SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW---SADGDKIIVA 816

Query: 178 TYSKIIGLFSDSDGRPLF-FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
             +K++ LF       L     GH+  I + +FS    L          +  W++ +   
Sbjct: 817 AKNKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDS-RL 873

Query: 237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESV 290
            +      +S    V F  +   +  L+ + +  + +W        S+   +  
Sbjct: 874 KVADCRGHLSWVHGVMF--SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 43/307 (14%), Positives = 89/307 (28%), Gaps = 71/307 (23%)

Query: 11   PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG--GIIYDYVWYP 68
            P     +   +   +             +W   ++            G    ++  ++ P
Sbjct: 850  PYDHLAVIALSQYCVE------------LWNIDSRLKV--ADC---RGHLSWVHGVMFSP 892

Query: 69   KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY 128
                 DG  S FL +S    I +W++      +                + F  +   + 
Sbjct: 893  -----DG--SSFLTASDDQTIRVWETKKVCKNSAIVLK-------QEIDVVFQENETMVL 938

Query: 129  AGFLSE---VKIFSTDRPGRECVSRNLKPWFR-KNIVSAIAINPVHPD--ICALGTYSKI 182
            A        +++ +          +  +  +  +  VS   +    P     A G     
Sbjct: 939  AV--DNIRGLQLIAG---------KTGQIDYLPEAQVSCCCL---SPHLEYVAFGDEDGA 984

Query: 183  IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
            I +    + R      GH   + H++F+++G  L S +  D  I  W+ +    +     
Sbjct: 985  IKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE-DSVIQVWNWQTGDYV--FLQ 1041

Query: 243  RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302
                T +          + LLS + +G + +WNV T                  F+ HQ 
Sbjct: 1042 AHQETVKDFRL---LQDSRLLSWSFDGTVKVWNVITG------------RIERDFTCHQG 1086

Query: 303  CTNGVRW 309
                   
Sbjct: 1087 TVLSCAI 1093

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 56/313 (17%), Positives = 94/313 (30%), Gaps = 71/313 (22%)

Query: 11   PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
            P    +     D  ++            +    N R     +    +  +          
Sbjct: 971  PHLEYVAFGDEDGAIK------------IIELPNNRVF--SSGVGHKKAV---------R 1007

Query: 71   S---SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI 127
                + DG     + SS  + I +W+   G+          V             D   +
Sbjct: 1008 HIQFTADG--KTLISSSEDSVIQVWNWQTGDYVFLQAHQETV------KDFRLLQDSRLL 1059

Query: 128  YAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGL 185
               F   VK+++          R+      +  V + AI     D    +  +  K   +
Sbjct: 1060 SWSFDGTVKVWNVIT--GRIE-RDFTC--HQGTVLSCAI---SSDATKFSSTSADKTAKI 1111

Query: 186  FSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245
            +S     PL  LKGHNG +    FS +GILL +G   + EI  W++ + G +LH+     
Sbjct: 1112 WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD-NGEIRIWNVSD-GQLLHSCAPIS 1169

Query: 246  STN---------QRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK 296
                          V F  +  S  L+S    G L  WNV T             +    
Sbjct: 1170 VEEGTATHGGWVTDVCF--SPDSKTLVSA--GGYLKWWNVAT------------GDSSQT 1213

Query: 297  FSAHQDCTNGVRW 309
            F  +      +  
Sbjct: 1214 FYTNGTNLKKIHV 1226

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 56.4 bits (136), Expect = 6e-09
 Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 24/205 (11%)

Query: 114 HAYSLA-FSLDGNKIYAGFLSEVKIFSTDRPGRECVS--RNLKPWFR------KNIVSAI 164
           +   L     + +++Y     + K               + +K   R       + V   
Sbjct: 562 NIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHA 621

Query: 165 AINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC 224
             +       A     K + +F    G  L  +K H   +    FSS+   + + +  D 
Sbjct: 622 CFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA-DK 679

Query: 225 EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSS 284
           ++  WD    G ++HT+          +F   S    L +G+ +  L +W++N       
Sbjct: 680 KVKIWDSAT-GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ------ 732

Query: 285 PYEESVQEPLYKFSAHQDCTNGVRW 309
                 +E       H +  N  R+
Sbjct: 733 ------KECRNTMFGHTNSVNHCRF 751

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 39/235 (16%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-SEVKIFSTDRPGREC 147
           + ++ +  GE     + +   DEV      AFS D + I       +VKI+ +   G+  
Sbjct: 639 LQVFKAETGEKLLDIKAHE--DEV---LCCAFSSDDSYIATCSADKKVKIWDSAT-GKL- 691

Query: 148 VSRNLKPWFR-KNIVSAIAINPV-HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGIT 205
               +  +      V+        +  + A G+    + L+  +       + GH   + 
Sbjct: 692 ----VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747

Query: 206 HLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDL------TSCS 259
           H  FS +  LL S +  D  +  WD+R+      +   +                   CS
Sbjct: 748 HCRFSPDDELLASCSA-DGTLRLWDVRS-ANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805

Query: 260 -----NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
                + ++    N  + +++++TS          + E     + H        +
Sbjct: 806 WSADGDKIIVAAKNK-VLLFDIHTS--------GLLAEIH---TGHHSTIQYCDF 848

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 52/286 (18%), Positives = 95/286 (33%), Gaps = 71/286 (24%)

Query: 11   PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK- 69
             DG  L+++S D+ ++            VW            L+  +  +  D+      
Sbjct: 1013 ADGKTLISSSEDSVIQ------------VWNWQTGDYV---FLQAHQETV-KDFRLLQDS 1056

Query: 70   ---TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK 126
               + S DG T           + +W+ + G I+  +  +     V    S A S D  K
Sbjct: 1057 RLLSWSFDG-T-----------VKVWNVITGRIERDFTCHQ--GTV---LSCAISSDATK 1099

Query: 127  IYAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTY 179
              +   S     KI+S D      +        +     V   A      D  + A G  
Sbjct: 1100 FSST--SADKTAKIWSFD--LLSPLHE-----LKGHNGCVRCSAF---SLDGILLATGDD 1147

Query: 180  SKIIGLFSDSDGRPLF---------FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD 230
            +  I +++ SDG+ L              H G +T + FS +   L S       +  W+
Sbjct: 1148 NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA---GGYLKWWN 1204

Query: 231  LRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV 276
            +   G    TF    +  ++++   +      ++ +  G L I  V
Sbjct: 1205 VAT-GDSSQTFYTNGTNLKKIHV--SPDFRTYVTVDNLGILYILQV 1247

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 63.0 bits (154), Expect = 4e-11
 Identities = 44/274 (16%), Positives = 87/274 (31%), Gaps = 46/274 (16%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
            DG  L +   + H+              W  S                +I   +     
Sbjct: 334 ADGKTLFSADAEGHIN------------SWDISTGISNR--VFPDVHATMITG-IKT--- 375

Query: 71  SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130
            +  G        S    + +  + G  + ++    N++        LA S DG+   A 
Sbjct: 376 -TSKG---DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS--QPLGLAVSADGDIAVAA 429

Query: 131 FLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGLFSD 188
               + I+S  +                   S +A+     D    A+G     + ++  
Sbjct: 430 CYKHIAIYSHGKLTEV---------PISYNSSCVAL---SNDKQFVAVGGQDSKVHVYKL 477

Query: 189 SDGRPLFF-LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
           S           H   IT + FS+NG  L +  +   ++I + + N   + HT      T
Sbjct: 478 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVANNFELAHTNSWTFHT 536

Query: 248 NQRVY---FDLTSCSNYLLSGNTNGDLSIWNVNT 278
             +V    +  +  +  L +G+ +  + +WN+N 
Sbjct: 537 A-KVACVSW--SPDNVRLATGSLDNSVIVWNMNK 567

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 56.1 bits (136), Expect = 7e-09
 Identities = 37/205 (18%), Positives = 67/205 (32%), Gaps = 22/205 (10%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHA---YSLAFSLDGNKIYAGFLSE---VKIFSTDR 142
           I L++ V G     +   +  +   H+   + L +S DG KI +   S    +KI++   
Sbjct: 214 IVLYNGVDGTKTGVFEDDSLKNV-AHSGSVFGLTWSPDGTKIASA--SADKTIKIWNVA- 269

Query: 143 PGRECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH 200
              +      K      +     + I           + +  I   +   G       GH
Sbjct: 270 -TLKV----EKTIPVGTRIEDQQLGIIW-TKQALVSISANGFINFVNPELGSIDQVRYGH 323

Query: 201 NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN 260
           N  IT L  S++G  LFS    +  I  WD+              +    +     +   
Sbjct: 324 NKAITALSSSADGKTLFSADA-EGHINSWDISTGISNRVFPDVHATMITGIKT---TSKG 379

Query: 261 YLLSGNTNGDLSIWNVNTSNLPSSP 285
            L + + +  L +     S + SS 
Sbjct: 380 DLFTVSWDDHLKVVPAGGSGVDSSK 404

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 26/196 (13%), Positives = 64/196 (32%), Gaps = 28/196 (14%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
           I ++    G++      Y       ++  +A S D   +  G   +   V ++     G 
Sbjct: 434 IAIYSH--GKLTEVPISY-------NSSCVALSNDKQFVAVG--GQDSKVHVYKLS--GA 480

Query: 146 ECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFF---LKGH 200
                          ++++A      +         S+ +  +S ++   L        H
Sbjct: 481 SVSEVKTIV--HPAEITSVAF---SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 535

Query: 201 NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN 260
              +  + +S + + L +G+  D  +I W++  P        +       V   +     
Sbjct: 536 TAKVACVSWSPDNVRLATGSL-DNSVIVWNMNKPSD-HPIIIKGAHAMSSVNSVIWLNET 593

Query: 261 YLLSGNTNGDLSIWNV 276
            ++S   + ++  WNV
Sbjct: 594 TIVSAGQDSNIKFWNV 609

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 52.6 bits (127), Expect = 8e-08
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 30/211 (14%)

Query: 89  IHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE-----VKIFSTD 141
           + +WD+      +K T   ++    V     +++  +  +I A    E       +F  D
Sbjct: 83  VRIWDTTQTTHILKTTIPVFS--GPV---KDISWDSESKRIAAV--GEGRERFGHVFLFD 135

Query: 142 RPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN 201
                    NL    +   ++++   P  P     G+    + +F     +       H 
Sbjct: 136 --TGTSN-GNLTG--QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT 190

Query: 202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST----NQRVY---FD 254
             +  + ++ +G L  S    D  I+ ++  + G     F          +  V+   + 
Sbjct: 191 KFVHSVRYNPDGSLFASTGG-DGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTW- 247

Query: 255 LTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP 285
            +     + S + +  + IWNV T  +  + 
Sbjct: 248 -SPDGTKIASASADKTIKIWNVATLKVEKTI 277

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Length = 611

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 47/320 (14%), Positives = 88/320 (27%), Gaps = 77/320 (24%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
           P G    +     ++R            +W  +     L  T+ +  G  + D  W    
Sbjct: 69  PSGYYCASGDVHGNVR------------IWDTTQTTHILKTTIPVFSGP-VKDISW---- 111

Query: 71  SSIDGFTSYFLCS---SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN-K 126
              +      + +         H++    G              +    S+ F      +
Sbjct: 112 -DSESKR---IAAVGEGRERFGHVFLFDTGTSNGNLTGQA--RAM---NSVDFKPSRPFR 162

Query: 127 IYAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTY 179
           I +G  S+   V IF  + P  +  S      F      V ++  N   PD  + A    
Sbjct: 163 IISG--SDDNTVAIF--EGPPFKFKST-----FGEHTKFVHSVRYN---PDGSLFASTGG 210

Query: 180 SKIIGLFSDSDGRPL-------FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR 232
              I L++  DG               H+G +  L +S +G  + S +  D  I  W++ 
Sbjct: 211 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-DKTIKIWNVA 269

Query: 233 NPGCILHTFPRQVSTNQRVYFDLTSCS---NYLLSGNTNGDLSIWNVNTSNLPSSPYEES 289
                          +Q++             L+S + NG ++  N              
Sbjct: 270 TLKVEKTIPVGTRIEDQQL-----GIIWTKQALVSISANGFINFVNPEL----------- 313

Query: 290 VQEPLYKFSAHQDCTNGVRW 309
                     H      +  
Sbjct: 314 -GSIDQVRYGHNKAITALSS 332

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 43/324 (13%), Positives = 100/324 (30%), Gaps = 68/324 (20%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPK 69
             GT     S D+ L  + L +                    +  ++      D  W   
Sbjct: 33  VSGTVDANFSTDSSLELWSLLA--------------ADSEKPIASLQVDSKFNDLDW--- 75

Query: 70  TSSIDGFTSYFLCSSMY-APIHLWDSVGGEIKATYRPYNQVDEVTHA-YSLAFS-LDGNK 126
             S +      +  ++    + L+ +             +    + +  ++ F+    N 
Sbjct: 76  --SHNNKI---IAGALDNGSLELYSTNEA--NNAINSMARFSNHSSSVKTVKFNAKQDNV 128

Query: 127 I-YAGFLSEVKIFSTDRPGRECVSRNLKPWFRK----NIVSAIAINPVHPDICALGTYSK 181
           +   G   E+ I+  ++      +       +     + V ++A N     + A    S 
Sbjct: 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188

Query: 182 IIGLFSDSDGRPLFFLK------GHNGGITHLEFSSNG---ILLFSGARKDCEIICWDLR 232
              ++     + +  L       G    ++ +E+       +   +G+  D  I+ WDLR
Sbjct: 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248

Query: 233 NPGCILHTFPR----QVSTNQRVYF---DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP 285
           N    L T  +     + +   + +   D     + LLS   +  + +WN  ++      
Sbjct: 249 NANTPLQTLNQGHQKGILS---LDWCHQD----EHLLLSSGRDNTVLLWNPESA------ 295

Query: 286 YEESVQEPLYKFSAHQDCTNGVRW 309
                 E L +F A  +     ++
Sbjct: 296 ------EQLSQFPARGNWCFKTKF 313

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 60.9 bits (147), Expect = 1e-10
 Identities = 32/198 (16%), Positives = 69/198 (34%), Gaps = 17/198 (8%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
           I + DS   ++       +  +E+ + Y          I+A     +   S +   +  V
Sbjct: 106 ITILDSKTNKVLREIEV-DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIV 164

Query: 149 SRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPL--FFLKGHNGGI 204
                        S+  +   H D  + AL +   I+ +++ S        F       I
Sbjct: 165 HSA----KSDVEYSSGVL---HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKI 217

Query: 205 THLEFSSNGILLFSGARKDCEIICWDLRNPGCIL--HTFPRQVSTNQRVYFDLTSCSNYL 262
             ++F+ NG  +      D  ++C+DLR     L   T+         V +D+      +
Sbjct: 218 KEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNM 275

Query: 263 LSGNT-NGDLSIWNVNTS 279
           ++ +  +  L+I+  +  
Sbjct: 276 IAYSNESNSLTIYKFDKK 293

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 58.6 bits (141), Expect = 6e-10
 Identities = 32/246 (13%), Positives = 73/246 (29%), Gaps = 13/246 (5%)

Query: 37  KSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVG 96
           K+   P  +  +L            + Y    K+   D +    +C      +H      
Sbjct: 10  KAPKWPILKNLELLQAQNYSRNIKTFPYKELNKSMYYDKWVC--MCRCEDGALHFTQLKD 67

Query: 97  GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-SEVKIFSTDRPGRECVSRNLKPW 155
            +   T    N      H   ++     N++   +  +++ I  +       V R ++  
Sbjct: 68  SKTITTITTPNPRTGGEHPAIISRG-PCNRLLLLYPGNQITILDSK---TNKVLREIEVD 123

Query: 156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-NGGITHLEFSSNGI 214
               I+     N V+ +          IG  S  D           +   +      + +
Sbjct: 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL 183

Query: 215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTN-QRVYFDLTSCSNYLLSGNTNGDLSI 273
           LL   +  D  +  ++L +P      FP       + V F   + + Y +    +  +  
Sbjct: 184 LLALYS-PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKF---ADNGYWMVVECDQTVVC 239

Query: 274 WNVNTS 279
           +++   
Sbjct: 240 FDLRKD 245

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 38/204 (18%), Positives = 73/204 (35%), Gaps = 23/204 (11%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS-LDGNKIYAGFLSE---VKIFSTDRPG 144
           I LWD       +  +     D +T    + F+  + N+++    S      +       
Sbjct: 98  IILWDYDVQNKTSFIQGMGPGDAIT---GMKFNQFNTNQLFVS--SIRGATTLRDFSGSV 152

Query: 145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGI 204
            +        W        + ++     + A G  +  + L    DG  +F  K H   +
Sbjct: 153 IQVF-AKTDSW--DYWYCCVDVSVSRQML-ATGDSTGRLLLL-GLDGHEIFKEKLHKAKV 207

Query: 205 THLEFSSNGILLFSGARKDCEIICWDLRN---PGCILHTFP--RQVSTNQRVYFDLTSCS 259
           TH EF+     L + +  D  +  WDLRN       +   P  + V+     YF+ T  S
Sbjct: 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNA---AYFNPTD-S 263

Query: 260 NYLLSGNTNGDLSIWNVNTSNLPS 283
             LL+ +   ++ +++    + P 
Sbjct: 264 TKLLTTDQRNEIRVYSSYDWSKPD 287

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 27/226 (11%), Positives = 71/226 (31%), Gaps = 30/226 (13%)

Query: 71  SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK-IYA 129
            S  G + +           +      ++  T  P++    V    SL +       +  
Sbjct: 37  KSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFD--RRV---TSLEWHPTHPTTVAV 91

Query: 130 GFLSE---VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGL- 185
           G  S+   + ++  D   +    + + P    + ++ +  N  + +   + +      L 
Sbjct: 92  G--SKGGDIILWDYDVQNKTSFIQGMGP---GDAITGMKFNQFNTNQLFVSSIRGATTLR 146

Query: 186 -FSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI---LHTF 241
            FS S  +        +     ++ S +  +L +G      ++   L         LH  
Sbjct: 147 DFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS-TGRLLLLGLDGHEIFKEKLHK- 204

Query: 242 PRQVSTNQRVYF--DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP 285
             +V+      F      C   + + + +  + +W++      +S 
Sbjct: 205 -AKVTH---AEFNPR---CDWLMATSSVDATVKLWDLRNIKDKNSY 243

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 22/125 (17%)

Query: 12  DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTS 71
           D T LLT    N +R +          +    +++ +    +K           W+P   
Sbjct: 262 DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKA---------TWHPMYD 312

Query: 72  ------SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN 125
                   D         +    I ++D+  G +    R  N    ++      FS  G+
Sbjct: 313 LIVAGRYPDDQLL----LNDKRTIDIYDANSGGLVHQLRDPNAAGIIS---LNKFSPTGD 365

Query: 126 KIYAG 130
            + +G
Sbjct: 366 VLASG 370

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 56.4 bits (135), Expect = 5e-09
 Identities = 41/321 (12%), Positives = 86/321 (26%), Gaps = 18/321 (5%)

Query: 19  NSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK-EGGIIYDYVWYPKTSSIDGFT 77
              + HL  FD      C  +++ +           I    G ++D  W+    +     
Sbjct: 167 EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHA-PHLV 225

Query: 78  SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQ--VDEVTHAYSLAFSLD---GNKIYAGFL 132
                 S    I+  + +            +     ++ A SL  + D      +  GF 
Sbjct: 226 GCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFK 285

Query: 133 S-EVKIFSTDRPGRECVSRNLKPWFRKNIVS-AIAINPVHPDICALGTYSKIIGLFSDSD 190
           +  V  F    P                I+S + A +     + +         +F+  D
Sbjct: 286 NGFVAEFDLTDPEV---PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD 342

Query: 191 GRPLFFLKGHNGG--ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTN 248
                       G  +  + +                +     R     +H    + +T 
Sbjct: 343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASS-LRAVPSRA-AFAVHPLVSRETTI 400

Query: 249 QRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR 308
             +    +     +L+G+ +G L I N     L       + Q+ L  +       +   
Sbjct: 401 TAIGV--SRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458

Query: 309 WKHHKFERDLLVADATCSGQI 329
                +E   L  +     +I
Sbjct: 459 RIDSSYEVYPLTVNDVSKAKI 479

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 50.6 bits (120), Expect = 3e-07
 Identities = 25/274 (9%), Positives = 70/274 (25%), Gaps = 24/274 (8%)

Query: 39  VWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE 98
                +    ++     ++  +         T+      +  +C      +  +D    E
Sbjct: 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPE 298

Query: 99  IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-SEVKIFSTDRPGRECVSRNLKPWFR 157
           + + Y   +    +    +     +   +    +     IF+         + +    FR
Sbjct: 299 VPSFYDQVHD-SYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR---FR 354

Query: 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF 217
            + +  +   P           +  +          +  L      IT +  S    ++ 
Sbjct: 355 GSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVL 413

Query: 218 SGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY-FDLTSCSN-YLLSGNTNGDLSIWN 275
           +G+  D  +I  +                 + R++ +D +   + Y +  +        N
Sbjct: 414 AGSA-DGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVN 472

Query: 276 VNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
             +                 K  AH       +W
Sbjct: 473 DVSK---------------AKIDAHGINITCTKW 491

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 55.8 bits (134), Expect = 6e-09
 Identities = 24/228 (10%), Positives = 64/228 (28%), Gaps = 8/228 (3%)

Query: 81  LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFST 140
             + +   +H+WD V  +  +  +    V ++  +        G+ I            T
Sbjct: 75  FVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRIT 134

Query: 141 DRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH 200
           D      V          +    +    +     +    ++  G+   +       +K H
Sbjct: 135 DDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH 194

Query: 201 NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY---FDLTS 257
              I  +  +    ++ + ++    I  +   + G ++  F R       V    +   +
Sbjct: 195 TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRG-LDRADVVDMKWS--T 250

Query: 258 CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN 305
             + L   +    L ++ +           +      Y F +     N
Sbjct: 251 DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY-FQSEWSLCN 297

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 29/220 (13%), Positives = 71/220 (32%), Gaps = 23/220 (10%)

Query: 116 YSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICA 175
               F+ D + +    L   +I++   P    +S+ ++       +S + +      +  
Sbjct: 23  TDYEFNQDQSCLILSTLKSFEIYNVH-PVAHIMSQEMRH------LSKVRMLHRTNYVAF 75

Query: 176 LGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG 235
           +    +++ ++ D   + +  +K     +  L  S   I++         I  +   NP 
Sbjct: 76  VTGVKEVVHIWDDVKKQDVSRIKVDA-PVKDLFLSREFIVVSY----GDVISVFKFGNPW 130

Query: 236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY 295
             +    R     +     L   + + L       L      T+       ++++     
Sbjct: 131 KRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQ-DQGVQQKAILGKGV 189

Query: 296 KFSAHQDCTNGVRWKHHKFERD--LLVADATCSGQITNVK 333
              AH +    V     +  R   ++   ATCS   T ++
Sbjct: 190 LIKAHTNPIKMV-----RLNRKSDMV---ATCSQDGTIIR 221

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 25/196 (12%), Positives = 63/196 (32%), Gaps = 9/196 (4%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
           + ++D V    K   +   +        +++ + D   +         ++S D       
Sbjct: 127 LLVFD-VDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF-GDVYSIDINSIPEE 184

Query: 149 SRNLKPWF-RKNIVSAIAINPVHPDICALGTYS--KIIGLFSDSDGRPLF-FLKGHNGGI 204
               +P     ++++ + +         + T    + I +        +  +L GH   +
Sbjct: 185 KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFV 244

Query: 205 THLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLS 264
           + +    + +LL S    D +I  WD +  G  L TF         +     +   +   
Sbjct: 245 SSICCGKDYLLL-SAGG-DDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNE 301

Query: 265 GNTNGDLSIWNVNTSN 280
            N   + ++  +  S 
Sbjct: 302 NNDIIEFAVSKIIKSK 317

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 53.9 bits (129), Expect = 3e-08
 Identities = 22/179 (12%), Positives = 54/179 (30%), Gaps = 20/179 (11%)

Query: 117 SLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICAL 176
           +L  S DG+ ++A   + +  F    P     +     W         + N    +    
Sbjct: 9   NLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGK---WSDDFDKIQESRNTTAKEQQGQ 65

Query: 177 GTYS------------KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC 224
            + +              I   +     P          I +L  +S+   L + A  D 
Sbjct: 66  SSENENENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDK 125

Query: 225 EIICWDLRNPGCILHTFPRQVSTNQRVY---FDLTSCSNYLLSGNTNGDLSIWNVNTSN 280
            ++ +D+      +    ++   ++R              ++  +  GD+   ++N+  
Sbjct: 126 SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISI--AEDDTTVIIADKFGDVYSIDINSIP 182

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Length = 450

 Score = 46.6 bits (110), Expect = 7e-06
 Identities = 26/176 (14%), Positives = 53/176 (30%), Gaps = 23/176 (13%)

Query: 116 YSLAFSLDGNKIYA--GFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDI 173
            +L  + D +++ A       + +F  D+  +  +    +  F K   +AI+I      +
Sbjct: 106 RNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKR-PNAISIAEDDTTV 164

Query: 174 ---CALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGI---LLFSGARKDCEII 227
                 G    I       +      + GH   +T +    +      + +  R D  I 
Sbjct: 165 IIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-DEHIK 223

Query: 228 CWDLRNPGCIL-----HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
                    +      H     VS+   +          LLS   +  +  W+  T
Sbjct: 224 ISHYPQCFIVDKWLFGHK--HFVSS---ICC---GKDYLLLSAGGDDKIFAWDWKT 271

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Length = 321

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 68/316 (21%), Positives = 122/316 (38%), Gaps = 74/316 (23%)

Query: 8   DEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWY 67
           ++  +   ++T S D+ ++            VW+  ++R  L ++L+  + G+       
Sbjct: 43  NKKENSETVVTGSLDDLVK------------VWKWRDERLDLQWSLEGHQLGV------- 83

Query: 68  PKTS---SIDGFTSYFLCS-SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD 123
              S   S          S S+ A I LWD   G+   +        +    ++LAFS D
Sbjct: 84  --VSVDISHTLPI---AASSSLDAHIRLWDLENGKQIKSIDAGP--VDA---WTLAFSPD 133

Query: 124 GNKIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGT 178
              +  G  +    V IF       +    +L    R   + +IA +P   D    A G 
Sbjct: 134 SQYLATG--THVGKVNIF--GVESGKKE-YSLDT--RGKFILSIAYSP---DGKYLASGA 183

Query: 179 YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238
              II +F  + G+ L  L+GH   I  L FS +  LL + +  D  I  +D+++   + 
Sbjct: 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD-DGYIKIYDVQH-ANLA 241

Query: 239 HTFP---RQVSTNQRVYF--DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEP 293
            T       V     V F  D      + +S +++  + +W+V T            +  
Sbjct: 242 GTLSGHASWVLN---VAFCPD----DTHFVSSSSDKSVKVWDVGT------------RTC 282

Query: 294 LYKFSAHQDCTNGVRW 309
           ++ F  HQD   GV++
Sbjct: 283 VHTFFDHQDQVWGVKY 298

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 34/153 (22%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
           + +W     E KA  R +     V     ++++ + +       +  +   + +PG   +
Sbjct: 258 VRVWVVATKECKAELREHR--HVV---ECISWAPESSYSSISEATGSETKKSGKPGPFLL 312

Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE 208
           S                           G+  K I ++  S G  L  L GH+  +  + 
Sbjct: 313 S---------------------------GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 345

Query: 209 FSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
           F S G  + S A  D  +  WD +N    + T 
Sbjct: 346 FHSGGKFILSCAD-DKTLRVWDYKN-KRCMKTL 376

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 30/155 (19%), Positives = 58/155 (37%), Gaps = 23/155 (14%)

Query: 158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF 217
           ++ V+ +  +PV   +    +    I ++    G     LKGH   +  + F  +G LL 
Sbjct: 108 RSPVTRVIFHPVFSVM-VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166

Query: 218 SGARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW 274
           S +  D  I  WD +     + T       VS+   V        ++++S + +  + +W
Sbjct: 167 SCSA-DMTIKLWDFQG-FECIRTMHGHDHNVSS---VSI--MPNGDHIVSASRDKTIKMW 219

Query: 275 NVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
            V T               +  F+ H++    VR 
Sbjct: 220 EVQTG------------YCVKTFTGHREWVRMVRP 242

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Length = 410

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 39/243 (16%), Positives = 80/243 (32%), Gaps = 50/243 (20%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
           I +WD   G+ + T + +   D V     ++F   G  + +   S    +K++       
Sbjct: 132 IKVWDYETGDFERTLKGHT--DSV---QDISFDHSGKLLASC--SADMTIKLWDFQG--- 181

Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG 203
                 ++       + VS+++I P + D     +  K I ++    G  +    GH   
Sbjct: 182 ---FECIRT-MHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW 236

Query: 204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL----HT-------------FPRQVS 246
           +  +  + +G L+ S +  D  +  W +    C      H              +     
Sbjct: 237 VRMVRPNQDGTLIASCSN-DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 295

Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG 306
                         +LLSG+ +  + +W+V+T               L     H +   G
Sbjct: 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG------------MCLMTLVGHDNWVRG 343

Query: 307 VRW 309
           V +
Sbjct: 344 VLF 346

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A Length = 434

 Score = 51.1 bits (121), Expect = 2e-07
 Identities = 35/244 (14%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 105 PYNQVDEVTHAYSLAFSLDGNKIYAGFLS-----EVKIFSTDRPGRECVSRNLKPWFRKN 159
               V      + LA S D   + A  +S      +  F       E   +     + K 
Sbjct: 85  QGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL 144

Query: 160 I------VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG 213
           +      V  +  NP  P + A+      I +   ++   +         +T + +S  G
Sbjct: 145 LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG 204

Query: 214 ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY-FDLTSCSNY-LLSGNTNGDL 271
             L  G +++  ++ +        +   P    ++  V   D+     Y         D 
Sbjct: 205 KQLAVG-KQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263

Query: 272 SIWNVNTSNLPSSPYEESVQEPLY-KFSAHQDCTNGVRWKHHKFER----DLLVADATCS 326
           ++       +   P +E     ++  F      +   R  H+        DL++A +  S
Sbjct: 264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS 323

Query: 327 GQIT 330
            +++
Sbjct: 324 TEVS 327

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 45/325 (13%), Positives = 94/325 (28%), Gaps = 62/325 (19%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
            +G  +L+  +D  +  +DL +    +S +              +    +     WYP  
Sbjct: 54  VEGRYMLSGGSDGVIVLYDLENS-SRQSYYTCKAVCSIGRDHPDVHRYSV-ETVQWYPH- 110

Query: 71  SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-- 128
              D     F  SS    + +WD+   +    +     V      YS   S    K    
Sbjct: 111 ---DT--GMFTSSSFDKTLKVWDTNTLQTADVFNFEETV------YSHHMSPVSTKHCLV 159

Query: 129 --AGFLSEVKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPDICA--------- 175
                  +V++    + G            +  +  + A++ +P +  I A         
Sbjct: 160 AVGTRGPKVQLCDL-KSGSC-----SHI-LQGHRQEILAVSWSPRYDYILATASADSRVK 212

Query: 176 ---LGTYSKIIGLFSDSDGRP----LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIIC 228
              +   S  +      +G+           HNG +  L F+S+G+ L +    D  +  
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT-DNRMRL 271

Query: 229 WDLRNPGCIL----HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSS 284
           W+  N    L              +        CS+  +       ++++ V +      
Sbjct: 272 WNSSNGENTLVNYGKVCNNSKKGLKFTVS--CGCSSEFVFVPYGSTIAVYTVYSG----- 324

Query: 285 PYEESVQEPLYKFSAHQDCTNGVRW 309
                  E +     H    +   +
Sbjct: 325 -------EQITMLKGHYKTVDCCVF 342

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Length = 408

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 22/165 (13%)

Query: 89  IHLWD-SVGGEIKATYRPYNQVDEVT-------HA---YSLAFSLDGNKIYAGFLSE--- 134
           + LWD         T   +N             H      L F+ DG  +          
Sbjct: 211 VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV--GTDNR 268

Query: 135 VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR 192
           ++++++     E    N        K  +          +      Y   I +++   G 
Sbjct: 269 MRLWNSSN--GENTLVNYGKVCNNSKKGLKFTVSCGCSSEF-VFVPYGSTIAVYTVYSGE 325

Query: 193 PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
            +  LKGH   +    F SN   L+SG+R DC I+ W       +
Sbjct: 326 QITMLKGHYKTVDCCVFQSNFQELYSGSR-DCNILAWVPSLYEPV 369

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 53/323 (16%), Positives = 105/323 (32%), Gaps = 66/323 (20%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK--EG--GIIYDYVW 66
            D   L++ S D  +             +W+   +     + +  K   G    + D   
Sbjct: 37  EDSPVLISGSRDKTVM------------IWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL 84

Query: 67  YPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK 126
                S +    + + SS    + LWD   G     +  +    EV   YS+AFS D  +
Sbjct: 85  -----SQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQ--SEV---YSVAFSPDNRQ 132

Query: 127 IYAGFLSE---VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKII 183
           I +        +K+++      EC   + +     + VS +  +P+      +  ++   
Sbjct: 133 ILSA--GAEREIKLWNIL---GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYF 187

Query: 184 GLFS----------DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN 233
              S          +++ +  +  K H   + HL  S NG  + +G  KD +++ WD+ N
Sbjct: 188 --ASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGG-KDKKLLIWDILN 244

Query: 234 PGCIL----HTFPRQVSTNQRVYFDLTSCSNYLLSG--NTNGDLSIWNVNT-SNLPSSPY 286
                          ++    + F       ++  G       + I+N+ T S  P    
Sbjct: 245 LTYPQREFDAGST--INQ---IAF--NPKLQWVAVGTDQG---VKIFNLMTQSKAPVCTI 294

Query: 287 EESVQEPLYKFSAHQDCTNGVRW 309
           E                   + W
Sbjct: 295 EAEPITKAEGQKGKNPQCTSLAW 317

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 28/211 (13%), Positives = 60/211 (28%), Gaps = 33/211 (15%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFST-------- 140
           I LW+ +G    ++    N  D V     + +S                 S         
Sbjct: 142 IKLWNILGECKFSSAEKENHSDWV---SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV 198

Query: 141 -DRPGRECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFL 197
            +   +  +    K    ++ V+ ++I    P+    A G   K + ++   +       
Sbjct: 199 WNTNFQ--IRYTFKA--HESNVNHLSI---SPNGKYIATGGKDKKLLIWDILNLTYPQRE 251

Query: 198 KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYF---- 253
                 I  + F+     +  G   D  +  ++L                 +        
Sbjct: 252 FDAGSTINQIAFNPKLQWVAVGT--DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN 309

Query: 254 -DLTSCS-----NYLLSGNTNGDLSIWNVNT 278
              TS +       L +G T+G +  ++  T
Sbjct: 310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Length = 343

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 29/208 (13%)

Query: 89  IHLWDSVGGEIKA-TYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPG 144
           + +     G ++  +    + V  +   +S   + D   + +G  S    V I+      
Sbjct: 7   LDIQVVKRGILEGHS----DWVTSIVAGFSQKENEDSPVLISG--SRDKTVMIWKLYEEE 60

Query: 145 RECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGH 200
           +               + VS +A++    +       ++ K + L+    G       GH
Sbjct: 61  QNGYFGIPHKALTGHNHFVSDLALSQ---ENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117

Query: 201 NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ----------VSTNQR 250
              +  + FS +   + S    + EI  W++    C   +  ++           S   +
Sbjct: 118 QSEVYSVAFSPDNRQILSAGA-EREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMK 175

Query: 251 VYFDLTSCSNYLLSGNTNGDLSIWNVNT 278
               +   + Y  S   +G L +WN N 
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVWNTNF 203

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 368

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 42/253 (16%), Positives = 73/253 (28%), Gaps = 45/253 (17%)

Query: 9   EAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYP 68
           +AP+ +C++T S D  L+             W   +  P     L++ E     D V YP
Sbjct: 137 KAPNYSCVMTGSWDKTLK------------FWDTRSSNPM--MVLQLPERCYCAD-VIYP 181

Query: 69  KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY 128
                         +     ++  ++   E +    P            +A   D     
Sbjct: 182 MAVVA--------TAERGLIVYQLENQPSEFRRIESPLKH-----QHRCVAIFKDKQNKP 228

Query: 129 AGFLS-----EVKIFSTDRPGRECVSRNLKPWFRKNI----------VSAIAINPVHPDI 173
            GF        V I   + P     +   K                 V+ IA +PVH  +
Sbjct: 229 TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL 288

Query: 174 CALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN 233
            A          +       L   +  +  I+   F+ NG +    +  D      +  N
Sbjct: 289 -ATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG-HEFYN 346

Query: 234 PGCILHTFPRQVS 246
           P    + F R  +
Sbjct: 347 PQKKNYIFLRNAA 359

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 49.5 bits (118), Expect = 7e-07
 Identities = 23/187 (12%), Positives = 51/187 (27%), Gaps = 15/187 (8%)

Query: 110 DEVTHAYSLAFSLDGNKIYAGFLS---EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAI 166
           D ++    +      + +     S    + ++  D   +         +  K+ +     
Sbjct: 12  DYIS---DIKIIPSKSLLLIT--SWDGSLTVYKFDIQAKNVDLLQSLRY--KHPLLCCNF 64

Query: 167 NPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSS-NGILLFSGARKDCE 225
                    +GT    I             L  +   +            L + +  D  
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW-DGL 123

Query: 226 IICWDLRNPGCI---LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLP 282
           I   D RN G     +       +  +   F + + S+ L+ G  N  +  + +      
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 283 SSPYEES 289
           +   EES
Sbjct: 184 NGTIEES 190

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 49.0 bits (118), Expect = 8e-07
 Identities = 29/157 (18%), Positives = 47/157 (29%), Gaps = 15/157 (9%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
           I            T      V       ++  S     +Y G    VK++    PG +  
Sbjct: 34  IGPGIPRHARQINTLNHGEVV------CAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP 87

Query: 149 SRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGL--FSDSDGRPLFFLKGHNGGI 204
              L    R N + +  + P   D     +G  +  + +   +    R    L       
Sbjct: 88  VSQLDCLNRDNYIRSCKLLP---DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144

Query: 205 THLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
             L  S +  + FS    D  I  WDL N   ++  F
Sbjct: 145 YALAISPDSKVCFSCCS-DGNIAVWDLHN-QTLVRQF 179

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Length = 337

 Score = 49.0 bits (118), Expect = 8e-07
 Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 41/229 (17%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
           + +WD      K+     + ++   +  S     DG  +  G   E   + I+    P  
Sbjct: 74  VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG--GEASTLSIWDLAAPTP 131

Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGHN 201
                              A+AI    PD  +C        I ++   +   +   +GH 
Sbjct: 132 RI----KAE-LTSSAPACYALAI---SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183

Query: 202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI-LHTFPRQVSTNQRVYF--DLTSC 258
            G + ++ S++G  L++G   D  +  WDLR    +  H F  Q+ +   + +       
Sbjct: 184 DGASCIDISNDGTKLWTGGL-DNTVRSWDLREGRQLQQHDFTSQIFS---LGYCPT---- 235

Query: 259 SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
             +L  G  + ++ + +VN  +              Y+   H+ C   +
Sbjct: 236 GEWLAVGMESSNVEVLHVNKPD-------------KYQLHLHESCVLSL 271

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 31/233 (13%), Positives = 65/233 (27%), Gaps = 33/233 (14%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPS-ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
           P+   L   S D   R F     E+  +    P   +      +          +V    
Sbjct: 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC--GWVH--- 206

Query: 70  TSSI----DGFTSYFLCSSMY-APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG 124
              +    +G     +    + + + L D+      AT         +    ++ F  + 
Sbjct: 207 --GVCFSANGSR---VAWVSHDSTVCLADADKKMAVATLASET--LPL---LAVTFITES 256

Query: 125 NKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIG 184
           + + AG      +F+ D    +          R ++    +   +           K   
Sbjct: 257 SLVAAGHDCFPVLFTYDSAAGKLSFGG-----RLDVPKQSSQRGLTARERFQNLDKKASS 311

Query: 185 LFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF----SGARKDCEIICWDLRN 233
             S + G  L     H   ++ +   S G        +    D  +  WD+R+
Sbjct: 312 EGSAAAGAGLD--SLHKNSVSQISVLSGGKAKCSQFCTTGM-DGGMSIWDVRS 361

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 35/259 (13%), Positives = 66/259 (25%), Gaps = 71/259 (27%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG--GIIYDYVWYP 68
            D T +    N++ +             ++  S  +    + LK      G +    W P
Sbjct: 18  KDRTQIAICPNNHEVH------------IYEKSGNKWVQVHELK---EHNGQVTGVDWAP 62

Query: 69  K-----TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD 123
                 T   D               ++W   G   K T               + ++ +
Sbjct: 63  DSNRIVTCGTDR-N-----------AYVWTLKGRTWKPTLVILRINRAAR---CVRWAPN 107

Query: 124 GNKIYAGFLSE---VKI--FSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD------ 172
             K   G  S    + I  F  +     C     KP   ++ V ++     HP+      
Sbjct: 108 EKKFAVG--SGSRVISICYFEQENDWWVCK-HIKKP--IRSTVLSLDW---HPNSVLLAA 159

Query: 173 --------------ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFS 218
                                +          G  +F      G +  + FS+NG  +  
Sbjct: 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 219

Query: 219 GARKDCEIICWDLRNPGCI 237
            +  D  +   D      +
Sbjct: 220 VSH-DSTVCLADADKKMAV 237

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Length = 372

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 40/326 (12%), Positives = 83/326 (25%), Gaps = 72/326 (22%)

Query: 7   VDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVW 66
           VD APD   ++T   D +              VW    +  K    +      I      
Sbjct: 58  VDWAPDSNRIVTCGTDRNAY------------VWTLKGRTWKPTLVIL----RIN-RAAR 100

Query: 67  YPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE----IKATYRPYNQVDEVTHAYSLAFSL 122
             + +  +     F   S    I +            K   +P      V    SL +  
Sbjct: 101 CVRWAP-NE--KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR--STVL---SLDWHP 152

Query: 123 DGNKIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFRK--------------NIVSAIA 165
           +   + AG  S     +IFS              PW  K                V  + 
Sbjct: 153 NSVLLAAG--SCDFKCRIFSAY-IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC 209

Query: 166 INPVHPDICAL--GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD 223
            +    +   +   ++   + L        +  L      +  + F +   L+ +G   D
Sbjct: 210 FSA---NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH--D 264

Query: 224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPS 283
           C  + +   +    L +F  ++   ++      +      + +        +        
Sbjct: 265 CFPVLFTYDSAAGKL-SFGGRLDVPKQSSQRGLTARERFQNLDKKASSE-GSAAAGAGL- 321

Query: 284 SPYEESVQEPLYKFSAHQDCTNGVRW 309
                         S H++  + +  
Sbjct: 322 -------------DSLHKNSVSQISV 334

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 32/247 (12%), Positives = 68/247 (27%), Gaps = 47/247 (19%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI------YAGFLSEVKIF--ST 140
           I LWD   G+  AT++    V        + FS  GN               + I+    
Sbjct: 98  IKLWDVSNGQCVATWKSPVPV------KRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151

Query: 141 DRPGRECVSRNLKPWFR------KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL 194
           D    E    + +P  +       +  +    +     I   G     I  +  S+    
Sbjct: 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYI-IAGHKDGKISKYDVSNNYEY 210

Query: 195 FF-LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF--PRQVST---- 247
              +  H   I+ ++FS +     + + +D      D+     +L  +     ++T    
Sbjct: 211 VDSIDLHEKSISDMQFSPDLTYFITSS-RDTNSFLVDVST-LQVLKKYETDCPLNTAVIT 268

Query: 248 --NQRVY---FDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302
              + +               +     +   ++               +E + +   H  
Sbjct: 269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF------------EEEIGRVQGHFG 316

Query: 303 CTNGVRW 309
             N V  
Sbjct: 317 PLNTVAI 323

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 31/233 (13%), Positives = 56/233 (24%), Gaps = 66/233 (28%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
             G  ++    D  +              +  SN    ++ ++ + E  I  D  + P  
Sbjct: 185 TKGKYIIAGHKDGKIS------------KYDVSNNYEYVD-SIDLHEKSI-SDMQFSP-- 228

Query: 71  SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA--YSLAFSLDGNKIY 128
              D   +YF+ SS      L D    ++   Y         T     +   +     I 
Sbjct: 229 ---DL--TYFITSSRDTNSFLVDVSTLQVLKKYE--------TDCPLNTAVITPLKEFII 275

Query: 129 AGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSD 188
            G   E K  +T                                  +          +  
Sbjct: 276 LGGGQEAKDVTTT---------------------------------SANEGKFEARFYHK 302

Query: 189 SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
                +  ++GH G +  +  S  G    SG   D  I              +
Sbjct: 303 IFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE-DGFIRLHHFEK-SYFDFKY 353

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Length = 369

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 177 GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
             +S    L+          L GH   +T ++++  G LLFS + KD     W   N G 
Sbjct: 8   HHHSSGENLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCS-KDSSASVWYSLN-GE 65

Query: 237 ILHTF 241
            L T 
Sbjct: 66  RLGTL 70

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A 2h13_A 3p4f_A 4a7j_A* 2h9l_A ... Length = 312

 Score = 48.2 bits (116), Expect = 2e-06
 Identities = 61/307 (19%), Positives = 115/307 (37%), Gaps = 64/307 (20%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
           P+G  L ++S D  ++            +W   +   K   T+   + GI  D  W    
Sbjct: 33  PNGEWLASSSADKLIK------------IWGAYDG--KFEKTISGHKLGI-SDVAW---- 73

Query: 71  SSIDGFTSYFLCS-SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
            S D      L S S    + +WD   G+   T + ++  + V   +   F+   N I +
Sbjct: 74  -SSDSNL---LVSASDDKTLKIWDVSSGKCLKTLKGHS--NYV---FCCNFNPQSNLIVS 124

Query: 130 GFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKI 182
           G  S    V+I+     G+      LK       + VSA+  N    D  +    +Y  +
Sbjct: 125 G--SFDESVRIWDVKT-GKC-----LKT-LPAHSDPVSAVHFNR---DGSLIVSSSYDGL 172

Query: 183 IGLFSDSDGRPLF-FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
             ++  + G+ L   +   N  ++ ++FS NG  + +    D  +  WD    G  L T+
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDYSK-GKCLKTY 230

Query: 242 PRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH 300
               +    ++ + +     +++SG+ +  + IWN+ T            +E + K   H
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT------------KEIVQKLQGH 278

Query: 301 QDCTNGV 307
            D     
Sbjct: 279 TDVVIST 285

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Length = 340

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 34/230 (14%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
           + LWD   G     +  +    +V    S+AFS D  +I +G  S    +K+++T    +
Sbjct: 110 LRLWDLTTGTTTRRFVGHT--KDV---LSVAFSSDNRQIVSG--SRDKTIKLWNTLGVCK 162

Query: 146 ECVSRNLKPWFR--KNIVSAIAINP--VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN 201
             V              VS +  +P   +P I     + K++ +++ ++ +      GH 
Sbjct: 163 YTVQ------DESHSEWVSCVRFSPNSSNPII-VSCGWDKLVKVWNLANCKLKTNHIGHT 215

Query: 202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP--RQVSTNQRVYFDLTSCS 259
           G +  +  S +G L  SG  KD + + WDL   G  L+T      ++    + F   S +
Sbjct: 216 GYLNTVTVSPDGSLCASGG-KDGQAMLWDLNE-GKHLYTLDGGDIINA---LCF---SPN 267

Query: 260 NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
            Y L   T   + IW++    +     +E +        A       + W
Sbjct: 268 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS---KAEPPQCTSLAW 314

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 197 LKGHNGGITHLEFSSNGILLFSG---ARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYF 253
            KG N  +   ++        +    AR    I  +++++    L     +    +   F
Sbjct: 14  QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTF 73

Query: 254 DLTSC-SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
             TS    YL +G+  G+L IWN+              + P+Y    H++  N +  
Sbjct: 74  GATSLQQRYLATGDFGGNLHIWNLEAP-----------EMPVYSVKGHKEIINAIDG 119

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 33/243 (13%), Positives = 64/243 (26%), Gaps = 45/243 (18%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
                L T     +L             +W        + Y++K     II         
Sbjct: 78  LQQRYLATGDFGGNLH------------IWNLEAPEMPV-YSVK-GHKEIINAIDGIGGL 123

Query: 71  S-SIDGFTSYFLCSSMYAPIHLWDSVGGE----IKATYRPYNQVDEVTHAYSLAFSLDGN 125
                      +  S    + +WD    +         +  N+ D  T A+  A++ +  
Sbjct: 124 GIGEGA--PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER 181

Query: 126 KIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINP--VHPDICALGT 178
            + AG   +   +K+F  D             W    KN V ++  +   +  +     +
Sbjct: 182 VVCAG--YDNGDIKLF--DLRNMALR------WETNIKNGVCSLEFDRKDISMNKLVATS 231

Query: 179 YSKIIGLF-----SDSDGRPLFFLKGHNGGITHLEFSSNGILLF-SGARKDCEIICWDLR 232
                 +F       + G      K H   +  +        LF +       +  W   
Sbjct: 232 LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG-AGGLHLWKYE 290

Query: 233 NPG 235
            P 
Sbjct: 291 YPI 293

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 29/202 (14%), Positives = 60/202 (29%), Gaps = 60/202 (29%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
           I L++   G++K   R   +   +      A SL    +  G                  
Sbjct: 46  IQLYEIQHGDLKLL-REIEKAKPIKCGTFGATSLQQRYLATG--------DFGG------ 90

Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE 208
             NL  W                ++              ++   P++ +KGH   I  ++
Sbjct: 91  --NLHIW----------------NL--------------EAPEMPVYSVKGHKEIINAID 118

Query: 209 ------FSSNGILLFSGARKDCEIICWDLRNPGCILHTF-PRQVSTNQRVYFDLTSCS-- 259
                        + +G+R D  +  WD R     +    P Q    +  +      +  
Sbjct: 119 GIGGLGIGEGAPEIVTGSR-DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN 177

Query: 260 ---NYLLSGNTNGDLSIWNVNT 278
                + +G  NGD+ ++++  
Sbjct: 178 QEERVVCAGYDNGDIKLFDLRN 199

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 41/257 (15%), Positives = 73/257 (28%), Gaps = 56/257 (21%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
                ++T S D  ++            VW P  Q+      ++  +G    D  W    
Sbjct: 127 EGAPEIVTGSRDGTVK------------VWDP-RQKDDPVANMEPVQGENKRD-CWTVAF 172

Query: 71  S---SIDGFTSYFLCS-SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG-- 124
               + +      +C+      I L+D     ++      N V       SL F      
Sbjct: 173 GNAYNQEERV---VCAGYDNGDIKLFDLRNMALRWETNIKNGV------CSLEFDRKDIS 223

Query: 125 -NKIYAGFL-SEVKIF--STDRPGRECVSRNLKPWFRKNIVSAIAINP------------ 168
            NK+ A  L  +  +F   T  P +   S + K    K+ V  +   P            
Sbjct: 224 MNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA--HKSTVWQVRHLPQNRELFLTAGGA 281

Query: 169 -------VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG-ILLFSGA 220
                      I      S+ I +        L  +      I+ L++S +   L    +
Sbjct: 282 GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS 341

Query: 221 RKDCEIICWDLRNPGCI 237
             D  +    +     I
Sbjct: 342 F-DQTVRVLIVTKLNKI 357

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 54/237 (22%)

Query: 89  IHLWDSVGGEIKATYRPYN-QVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPG 144
           + LW+     + A +       DEV    S  + L G KI +        +K++  +   
Sbjct: 140 LRLWNIQTDTLVAIFGGVEGHRDEV---LSADYDLLGEKIMSC--GMDHSLKLWRIN--S 192

Query: 145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGI 204
           +  +           I  +   NP   +       S+ I     S          H   +
Sbjct: 193 KRMM---------NAIKESYDYNP---NKTNRPFISQKIHFPDFSTRD------IHRNYV 234

Query: 205 THLEFSSNGILLFSGARKDCEIICWDL-------------RNPGCILHTFPRQVSTNQRV 251
             + +   G L+ S +  +  I+CW                +   IL  F         +
Sbjct: 235 DCVRWL--GDLILSKSC-ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM 291

Query: 252 YFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR 308
            F +      L  GN  G L +W++           +  +      + H+ C   +R
Sbjct: 292 RFSMDFWQKMLALGNQVGKLYVWDLEVE--------DPHKAKCTTLTHHK-CGAAIR 339

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Length = 366

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 31/257 (12%), Positives = 84/257 (32%), Gaps = 45/257 (17%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLS-----EVKIFSTDRP 143
           + L++          + Y   D   + Y+ A++ D N  +           ++I +    
Sbjct: 46  VTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT- 104

Query: 144 GRECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL---FFLK 198
             +C+       +    N ++ +  +P  P++    +    + L++      +     ++
Sbjct: 105 -MQCIKH-----YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE 158

Query: 199 GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP----------RQVSTN 248
           GH   +   ++   G  + S    D  +  W + +   +++              +   +
Sbjct: 159 GHRDEVLSADYDLLGEKIMSCGM-DHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFIS 216

Query: 249 QRVYF-DLTS-------------CSNYLLSGNTNGDLSIWNVNTSNLPSSPYE--ESVQE 292
           Q+++F D ++               + +LS +    +  W            +  ES   
Sbjct: 217 QKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVT 276

Query: 293 PLYKFSAHQDCTNGVRW 309
            L +F   Q     +R+
Sbjct: 277 ILGRFDYSQCDIWYMRF 293

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Length = 435

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 36/213 (16%), Positives = 73/213 (34%), Gaps = 42/213 (19%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS-LDGNKIYAGFLSE---VKI--FSTDR 142
           I LW+    +     +       +T    L F+ L+ N+ YA   S     ++  F  + 
Sbjct: 144 IMLWNFGIKDKPTFIKGIGAGGSIT---GLKFNPLNTNQFYAS--SMEGTTRLQDFKGNI 198

Query: 143 PGRECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGH 200
                 S  +  W       ++ ++       +   G     + L  + DG+ L+ L+ H
Sbjct: 199 LRVFASSDTINIW-----FCSLDVSA---SSRMVVTGDNVGNVILL-NMDGKELWNLRMH 249

Query: 201 NGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGCIL-------HTFPRQVSTNQRVY 252
              +TH+  +      L + +  D  +  WDLR             H     V+      
Sbjct: 250 KKKVTHVALNPCCDWFLATASV-DQTVKIWDLRQVRGKASFLYSLPHR--HPVNA---AC 303

Query: 253 F--DLTSCSNYLLSGNTNGDLSIWNVNTSNLPS 283
           F  D       LL+ +   ++ +++ +  + P 
Sbjct: 304 FSPD----GARLLTTDQKSEIRVYSASQWDCPL 332

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 401

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 31/204 (15%), Positives = 61/204 (29%), Gaps = 41/204 (20%)

Query: 116 YSLAFSLDGNKIYAGFL-SEVKI--FSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPD 172
           Y          + A  L   V +    +        +           V+++  +     
Sbjct: 95  YLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDE------STYVASVKWSHDGSF 148

Query: 173 ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR 232
           + ++G  + ++ ++       L  + GH   +  L +  N  +L SG+R    I   D+R
Sbjct: 149 L-SVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR-SGAIHHHDVR 204

Query: 233 NPGCILHTFPRQVSTNQRVYFDLTSCS-------NYLLSGNTNGDLSIWNVNTSNLPSSP 285
                + T       +  V      C          L SG  +  + IW+  +S      
Sbjct: 205 IANHQIGTL---QGHSSEV------CGLAWRSDGLQLASGGNDNVVQIWDARSS------ 249

Query: 286 YEESVQEPLYKFSAHQDCTNGVRW 309
                  P +  + H      V W
Sbjct: 250 ------IPKFTKTNHNAAVKAVAW 267

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Length = 345

 Score = 46.4 bits (111), Expect = 6e-06
 Identities = 55/325 (16%), Positives = 97/325 (29%), Gaps = 65/325 (20%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
           P GT L +   D  +R            +W            L       +    W P  
Sbjct: 26  PAGTLLASCGGDRRIR------------IWGTEGDSWICKSVLSEGHQRTVRKVAWSP-- 71

Query: 71  SSIDGFTSYFLCSSMYAPIHLWDSVGGEIK--ATYRPYNQVDEVTHAYSLAFSLDGNKIY 128
               G  +Y   +S  A   +W     + +   T   +   +EV    S+A++  GN + 
Sbjct: 72  ---CG--NYLASASFDATTCIWKKNQDDFECVTTLEGHE--NEV---KSVAWAPSGNLLA 121

Query: 129 AGFLSE---VKI--FSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTY 179
               S    V +     +    ECVS             V  +     HP   + A  +Y
Sbjct: 122 TC--SRDKSVWVWEVDEEDEY-ECVSV-----LNSHTQDVKHVVW---HPSQELLASASY 170

Query: 180 SKIIGLFSDSDGRPLFF--LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
              + L+ + +   +    L+GH   +  L F  +G  L S +  D  +  W    PG  
Sbjct: 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD-DRTVRIWRQYLPGNE 229

Query: 238 LHTFPRQVSTNQRVYFDLTSC-------------SNYLLSGNTNGDLSIWNVNTSNLPSS 284
                     + +    L+               +  L +   +  + ++  + ++ P  
Sbjct: 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ 289

Query: 285 PYEESVQEPLYKFSAHQDCTNGVRW 309
           P             AH    N V W
Sbjct: 290 PTFSLTAHLH---QAHSQDVNCVAW 311

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 34/159 (21%)

Query: 89  IHLWD-SVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPG 144
             L D  V  ++K   R             ++ S     I AG       + ++  D   
Sbjct: 472 FKLSDLEVSFDLKTPLR--------AKPSYISISPSETYIAAG--DVMGKILLY--DLQS 519

Query: 145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD------------GR 192
           RE  +      FR + ++AI+  P             ++   + S              +
Sbjct: 520 REVKTSRWA--FRTSKINAISWKPAEKGANEEEIEEDLV--ATGSLDTNIFIYSVKRPMK 575

Query: 193 PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL 231
            +  L  H  G+ +L + +   L+ SGA  D  I  W++
Sbjct: 576 IIKALNAHKDGVNNLLWETPSTLVSSGA--DACIKRWNV 612

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 50/226 (22%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
           I  W S       +    N +       SL  S    +  +   S    +K+        
Sbjct: 359 IMEWSSSSMHQDHS----NLI------VSLDNS-KAQEYSSI--SWDDTLKV--NGITKH 403

Query: 146 ECVSRNLKPWFRKNIVSAIAINPVHPD-ICALGTYSKIIGLFSDSDGRPLFFLKGH-NGG 203
           E  S+              +    + D   A+ T    + +     G  +  ++ +  G 
Sbjct: 404 EFGSQ----------PKVAS---ANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS 450

Query: 204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLL 263
              L  +   + L  G          DL     +      + S    +    +    Y+ 
Sbjct: 451 AVSLSQNYVAVGLEEG-NTIQVFKLSDLEVSFDLKTPLRAKPSY---ISI--SPSETYIA 504

Query: 264 SGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
           +G+  G + ++++ +         E         +      N + W
Sbjct: 505 AGDVMGKILLYDLQS--------REVKTSRW---AFRTSKINAISW 539

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 32/204 (15%), Positives = 62/204 (30%), Gaps = 30/204 (14%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL---DGNKIYAGFLSE---VKIFSTDR 142
           I  +D   GE           + V       F+L   D  K           ++++  D 
Sbjct: 231 ISCFDGKSGEFLKYIEDDQ--EPV---QGGIFALSWLDSQKFATV--GADATIRVW--DV 281

Query: 143 PGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNG 202
              +CV +      ++     + +           +    +  +       L  + GHN 
Sbjct: 282 TTSKCV-QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK 340

Query: 203 GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYL 262
           GIT L  +     L SG+  D  I+ W   +     H+    + +   +     S +   
Sbjct: 341 GITALTVNP----LISGSY-DGRIMEWSSSSMHQD-HS--NLIVS---LDN---SKAQEY 386

Query: 263 LSGNTNGDLSIWNVNTSNLPSSPY 286
            S + +  L +  +      S P 
Sbjct: 387 SSISWDDTLKVNGITKHEFGSQPK 410

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 16/134 (11%), Positives = 43/134 (32%), Gaps = 26/134 (19%)

Query: 188 DSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST 247
           +  G  L  L  H   I  ++++ +G  + S    +   I W++ + G ++  F  + + 
Sbjct: 136 NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV-ENVTILWNVIS-GTVMQHFELKETG 193

Query: 248 NQRVYFDLTS------------CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY 295
              +  +  S              +  +     G + ++ +              + P  
Sbjct: 194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITE------------KTPTG 241

Query: 296 KFSAHQDCTNGVRW 309
           K   H    + + +
Sbjct: 242 KLIGHHGPISVLEF 255

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 43/304 (14%), Positives = 86/304 (28%), Gaps = 88/304 (28%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG--GIIYDYVWYP 68
            DG  ++T   +  LR            +W  +     L   L         I    W  
Sbjct: 118 HDGNSIVTGVENGELR------------LWNKTGA---LLNVL---NFHRAPIVSVKW-- 157

Query: 69  KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY 128
              + DG  ++ +   +     LW+ + G +   +         +   +   S DG+   
Sbjct: 158 ---NKDG--THIISMDVENVTILWNVISGTVMQHFELKE--TGGSSINAENHSGDGSLGV 210

Query: 129 AGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSD 188
                    +  D   +               V                     I ++  
Sbjct: 211 DV------EWVDD--DK--------------FVI--------------PGPKGAIFVYQI 234

Query: 189 SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF---PRQV 245
           ++  P   L GH+G I+ LEF+    LL S +  D  +  W   N G   + F    + +
Sbjct: 235 TEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-DGTLRIWHGGN-GNSQNCFYGHSQSI 292

Query: 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN 305
            +     +      + ++S + +G + +W++  +              L           
Sbjct: 293 VS---ASW---VGDDKVISCSMDGSVRLWSLKQN------------TLLALSIVDGVPIF 334

Query: 306 GVRW 309
             R 
Sbjct: 335 AGRI 338

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Length = 425

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 26/243 (10%), Positives = 63/243 (25%), Gaps = 44/243 (18%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK-EGGIIYDYVWYPK 69
            DGT +++   +N    +++ S       +                 +G +  D  W   
Sbjct: 159 KDGTHIISMDVENVTILWNVISG-TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD 217

Query: 70  ----TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN 125
                    G             I ++             ++    +     L F+    
Sbjct: 218 DKFVIPGPKG-A-----------IFVYQITEKTPTGKLIGHH--GPI---SVLEFNDTNK 260

Query: 126 KIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGT 178
            + +   S+   ++I+          + N +  F      + + +      D  +    +
Sbjct: 261 LLLSA--SDDGTLRIWHGG-------NGNSQNCFYGHSQSIVSASW---VGDDKV-ISCS 307

Query: 179 YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL 238
               + L+S      L         I     S +G         D ++  +DL+      
Sbjct: 308 MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM-DGQVNVYDLKKLNSKS 366

Query: 239 HTF 241
            + 
Sbjct: 367 RSL 369

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 32/160 (20%), Positives = 50/160 (31%), Gaps = 23/160 (14%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
           + +WDS            +    V    + A++  GN +  G         I+  +   R
Sbjct: 79  LIIWDSYTTNKVHAIPLRS--SWV---MTCAYAPSGNYVACG--GLDNICSIY--NLKTR 129

Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGHN 201
           E   R  +         +S         D  I    +      L+    G+      GH 
Sbjct: 130 EGNVRVSRE-LAGHTGYLSCCRF---LDDNQI-VTSSGDTTCALWDIETGQQTTTFTGHT 184

Query: 202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
           G +  L  + +  L  SGA  D     WD+R   C   TF
Sbjct: 185 GDVMSLSLAPDTRLFVSGAC-DASAKLWDVREGMCR-QTF 222

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 18/123 (14%)

Query: 190 DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP---RQVS 246
             R    L+GH   I  + + ++  LL S ++ D ++I WD       +H  P     V 
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQ-DGKLIIWDSYT-TNKVHAIPLRSSWVM 101

Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG 306
           T     +      NY+  G  +   SI+N+ T         E       + + H    + 
Sbjct: 102 T---CAY--APSGNYVACGGLDNICSIYNLKT--------REGNVRVSRELAGHTGYLSC 148

Query: 307 VRW 309
            R+
Sbjct: 149 CRF 151

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 24/125 (19%)

Query: 190 DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQ 249
           +G       GH   I  + F  NG    +G+  D     +DLR     L T+        
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSD-DATCRLFDLRA-DQELMTYSHDNIIC- 271

Query: 250 RVYFDLTSCS-----NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCT 304
                +TS S       LL+G  + + ++W+   +            +     + H +  
Sbjct: 272 ----GITSVSFSKSGRLLLAGYDDFNCNVWDALKA------------DRAGVLAGHDNRV 315

Query: 305 NGVRW 309
           + +  
Sbjct: 316 SCLGV 320

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Length = 340

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 51/142 (35%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
             L+D    +   TY   N +  +T   S++FS  G  + AG          D       
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGIT---SVSFSKSGRLLLAG--------YDDF------ 292

Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE 208
             N   W                D                        L GH+  ++ L 
Sbjct: 293 --NCNVW----------------DA---------------LKADRAGVLAGHDNRVSCLG 319

Query: 209 FSSNGILLFSGARKDCEIICWD 230
            + +G+ + +G+  D  +  W+
Sbjct: 320 VTDDGMAVATGS-WDSFLKIWN 340

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 20/143 (13%)

Query: 158 KNIVSAIAINPVHPDICALGTYSKII-------GLFSDSDGRPLFFLKGHNGGITHLEFS 210
              V  IA  P + ++ A G+    +       G        P+  L+GH   +  + + 
Sbjct: 81  TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWH 140

Query: 211 SNGI-LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS-----NYLLS 264
                +L S    D  I+ WD+   G  + T    V  +      + S         + +
Sbjct: 141 PTAQNVLLSAGC-DNVILVWDVGT-GAAVLTLGPDVHPDT-----IYSVDWSRDGALICT 193

Query: 265 GNTNGDLSIWNVNTSNLPSSPYE 287
              +  + +       + +    
Sbjct: 194 SCRDKRVRVIEPRKGTVVAEKDR 216

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 35/224 (15%), Positives = 67/224 (29%), Gaps = 32/224 (14%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
           I +WD   G    T  P    D +   YS+ +S DG  I          V++   +    
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTI---YSVDWSRDGALICTS--CRDKRVRVI--EPRKG 208

Query: 146 ECVSRNLKPWFRKNIVSAIAINPVHPD--ICALGTYS---KIIGLFSDSDGRPL--FFLK 198
             V+   +P      V A+       +  I   G      + + L+              
Sbjct: 209 TVVAEKDRPHEGTRPVHAV----FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL 264

Query: 199 GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP-RQVSTNQR-VYFDLT 256
             + G+    F  +  +++   + D  I  +++ +    LH         +QR + +   
Sbjct: 265 DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM-- 322

Query: 257 SCSNYLLSGNTNGDLSIWNVNTSNLPSSPY-----EESVQEPLY 295
                 L  N       + ++               +  QE LY
Sbjct: 323 --PKRGLEVNKCEIARFYKLHERKCEPIAMTVPRKSDLFQEDLY 364

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 35/318 (11%), Positives = 89/318 (27%), Gaps = 76/318 (23%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPS-------ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYD 63
            D   ++++S D  +  +D  +        + C  V                      Y 
Sbjct: 74  KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVM------------------ACAY- 114

Query: 64  YVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA-YSLAFSL 122
                   +  G      C  +     ++     + +        V   T+   + +F+ 
Sbjct: 115 --------APSG--CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN 164

Query: 123 DGNKIYAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHP-DICAL 176
              +I     S      ++  +    + +       F      V  + + P    +    
Sbjct: 165 SDMQILTA--SGDGTCALWDVES--GQLLQS-----FHGHGADVLCLDLAPSETGNTFVS 215

Query: 177 GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
           G   K   ++    G+ +   + H   +  + +  +G    SG+  D     +DLR    
Sbjct: 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD-DATCRLYDLRA-DR 273

Query: 237 ILHTFPRQVSTNQRVYFDLTSCS-----NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQ 291
            +  + ++           +S         L +G  +  +++W+V               
Sbjct: 274 EVAIYSKESIIF-----GASSVDFSLSGRLLFAGYNDYTINVWDVLK------------G 316

Query: 292 EPLYKFSAHQDCTNGVRW 309
             +     H++  + +R 
Sbjct: 317 SRVSILFGHENRVSTLRV 334

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Length = 354

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 16/137 (11%)

Query: 176 LGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG 235
           L   ++ +        +    LKGH   +  +++  +   + S ++ D ++I WD     
Sbjct: 39  LHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQ-DGKVIVWDSFT-T 96

Query: 236 CILHTFP---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQE 292
              H        V       +        +  G  +   S++ +           E++  
Sbjct: 97  NKEHAVTMPCTWVMA---CAY--APSGCAIACGGLDNKCSVYPLTFDK------NENMAA 145

Query: 293 PLYKFSAHQDCTNGVRW 309
                + H +  +   +
Sbjct: 146 KKKSVAMHTNYLSACSF 162

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 54/268 (20%), Positives = 99/268 (36%), Gaps = 68/268 (25%)

Query: 72  SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF 131
              G  +  +  S    + +W +V G+   T   +     V   +S       N I +G 
Sbjct: 126 QFCG--NRIVSGSDDNTLKVWSAVTGKCLRTLVGHT--GGV---WSSQMR--DNIIISG- 175

Query: 132 LSEVKIFSTDRPGR-------ECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKI 182
                  STDR  +       EC+            + V  + +   H      G+    
Sbjct: 176 -------STDRTLKVWNAETGECIHT-----LYGHTSTVRCMHL---HEKRVVSGSRDAT 220

Query: 183 IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP 242
           + ++    G+ L  L GH   +  +++  +G  + SGA  D  +  WD     C LHT  
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-DFMVKVWDPETETC-LHTLQ 276

Query: 243 ---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA 299
               +V +   + FD      +++SG+ +  + +W+V T               ++  + 
Sbjct: 277 GHTNRVYS---LQFD----GIHVVSGSLDTSIRVWDVETG------------NCIHTLTG 317

Query: 300 HQDCTNGVRWKHHKFERDLLV---ADAT 324
           HQ  T+G+  K      ++LV   AD+T
Sbjct: 318 HQSLTSGMELKD-----NILVSGNADST 340

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 23/148 (15%)

Query: 161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA 220
           V  +            G Y  ++ ++       L  L+GH   +  L+F  +GI + SG+
Sbjct: 242 VRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS 296

Query: 221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN 280
             D  I  WD+    C +HT     S    +        N L+SGN +  + IW++ T  
Sbjct: 297 L-DTSIRVWDVETGNC-IHTLTGHQSLTSGMELK----DNILVSGNADSTVKIWDIKT-- 348

Query: 281 LPSSPYEESVQEPLYKFSAHQDCTNGVR 308
                      + L          + V 
Sbjct: 349 ----------GQCLQTLQGPNKHQSAVT 366

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 36/198 (18%), Positives = 76/198 (38%), Gaps = 35/198 (17%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
           + +WD   G+       +     V     + +  DG ++ +G  +    VK++  +    
Sbjct: 221 LRVWDIETGQCLHVLMGHV--AAV---RCVQY--DGRRVVSG--AYDFMVKVWDPET--E 269

Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG 203
            C+        +   N V ++  + +H      G+    I ++    G  +  L GH   
Sbjct: 270 TCLHT-----LQGHTNRVYSLQFDGIH---VVSGSLDTSIRVWDVETGNCIHTLTGHQSL 321

Query: 204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY---FDLTSCSN 260
            + +E   N  +L SG   D  +  WD++  G  L T          V    F+     N
Sbjct: 322 TSGMELKDN--ILVSGNA-DSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQFN----KN 373

Query: 261 YLLSGNTNGDLSIWNVNT 278
           ++++ + +G + +W++ T
Sbjct: 374 FVITSSDDGTVKLWDLKT 391

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 49/244 (20%)

Query: 11  PD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG--GIIYDYVWY 67
            D    +++ S D  +             +W+ +          +   G    + D V  
Sbjct: 392 IDNADIIVSASRDKSII------------LWKLTKDDKAYGVAQRRLTGHSHFVEDVVL- 438

Query: 68  PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI 127
               S DG   + L  S    + LWD   G     +  +    +V    S+AFSLD  +I
Sbjct: 439 ----SSDG--QFALSGSWDGELRLWDLAAGVSTRRFVGHT--KDV---LSVAFSLDNRQI 487

Query: 128 YAGFLSEVKIFSTDRPGR------ECVSRNLKPWFR--KNIVSAIAINP--VHPDICALG 177
            +         S DR  +      EC    +       ++ VS +  +P  + P I    
Sbjct: 488 VSA--------SRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTI-VSA 537

Query: 178 TYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
           ++ K + +++ S+ +    L GH G ++ +  S +G L  SG  KD  ++ WDL   G  
Sbjct: 538 SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWDLAE-GKK 595

Query: 238 LHTF 241
           L++ 
Sbjct: 596 LYSL 599

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 13/158 (8%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV 148
             + ++  GEI         + +++  +    +   N        +  + +        +
Sbjct: 319 ATMENAQKGEIMPN------IPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGL 372

Query: 149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGL-----FSDSDGRPLFFLKGHNGG 203
                     ++V+AIA    + DI    +  K I L        + G     L GH+  
Sbjct: 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHF 432

Query: 204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF 241
           +  +  SS+G    SG+  D E+  WDL   G     F
Sbjct: 433 VEDVVLSSDGQFALSGSW-DGELRLWDLAA-GVSTRRF 468

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Length = 694

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 27/199 (13%), Positives = 55/199 (27%), Gaps = 29/199 (14%)

Query: 117 SLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICAL 176
           ++A      ++       +     +    E +  N+            A+         +
Sbjct: 301 AVALKSYEEELAKD--PRIAATMENAQKGEIM-PNIPQMSAFWYAVRTAVINAASGRQTV 357

Query: 177 GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSS-NGILLFSGARKDCEIICWDLRNP- 234
                     + +       ++ H   +T +     N  ++ S +R D  II W L    
Sbjct: 358 DAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASR-DKSIILWKLTKDD 416

Query: 235 ---GCILHTFP---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEE 288
              G            V     V    +S   + LSG+ +G+L +W++            
Sbjct: 417 KAYGVAQRRLTGHSHFVED---VVL--SSDGQFALSGSWDGELRLWDLAA---------- 461

Query: 289 SVQEPLYKFSAHQDCTNGV 307
                  +F  H      V
Sbjct: 462 --GVSTRRFVGHTKDVLSV 478

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 43.7 bits (104), Expect = 4e-05
 Identities = 48/242 (19%), Positives = 85/242 (35%), Gaps = 48/242 (19%)

Query: 12  DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG--GIIYDYVWYPK 69
               LL+ S D  L              W+ +    K    ++  +G   I+ D      
Sbjct: 29  QPNLLLSASRDKTLI------------SWKLTGDDQKFGVPVRSFKGHSHIVQDCTL--- 73

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
             + DG  +Y L +S    + LWD   GE    +  +    +V    S+      + I +
Sbjct: 74  --TADG--AYALSASWDKTLRLWDVATGETYQRFVGHK--SDV---MSVDIDKKASMIIS 124

Query: 130 GFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPDIC-----ALGTY 179
           G  S    +K+++    G+      L        + VS + + P                
Sbjct: 125 G--SRDKTIKVWTIK--GQC-----LAT-LLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174

Query: 180 SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH 239
            K++  ++ +  +      GHN  I  L  S +G L+ S   KD EI+ W+L      ++
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLWNLAA-KKAMY 232

Query: 240 TF 241
           T 
Sbjct: 233 TL 234

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Length = 319

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 159 NIVSAIAINPVHPDICALGTYSKII-----GLFSDSDGRPLFFLKGHNGGITHLEFSSNG 213
             V+++A +   P++    +  K +            G P+   KGH+  +     +++G
Sbjct: 18  GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG 77

Query: 214 ILLFSGARKDCEIICWDLRNPGCILHTF 241
               S +  D  +  WD+   G     F
Sbjct: 78  AYALSASW-DKTLRLWDVAT-GETYQRF 103

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 42/232 (18%)

Query: 89  IHLWDSVGGEIKATYRPYNQV----DEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTD 141
              + +V   +         V      V       F   G+ +Y           +F  +
Sbjct: 29  DEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKA--RLDGHDFLF--N 84

Query: 142 RPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN 201
              R+      K   R +  +             LGT    I +   +        + H 
Sbjct: 85  TIIRDG----SKMLKRADYTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQAHV 139

Query: 202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYF--DLT 256
             IT L+F  +G  L S ++ D ++  W +++ G    T       V+    +       
Sbjct: 140 SEITKLKFFPSGEALISSSQ-DMQLKIWSVKD-GSNPRTLIGHRATVTD---IAIIDR-- 192

Query: 257 SCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR 308
                +LS + +G + +W   T               ++ F+  ++  +GV 
Sbjct: 193 --GRNVLSASLDGTIRLWECGT------------GTTIHTFNRKENPHDGVN 230

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 14/122 (11%)

Query: 186 FSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245
                 R L   +       +LEF + G  + +G      I   ++ +    +    +  
Sbjct: 234 LFVGTDRQL--HEISTSKKNNLEFGTYGKYVIAGHV-SGVITVHNVFSKEQTIQLPSKFT 290

Query: 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN 305
            +   +  D  + +NY+ +G  NG L+ W++ +        E  V E L          N
Sbjct: 291 CSCNSLTVDGNN-ANYIYAGYENGMLAQWDLRSP-------ECPVGEFL---INEGTPIN 339

Query: 306 GV 307
            V
Sbjct: 340 NV 341

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Length = 420

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 36/280 (12%), Positives = 82/280 (29%), Gaps = 56/280 (20%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
            D   +L  +++N    +         +V +  N+  +    +     G+          
Sbjct: 15  YDFKAVLEENDENDDEFYI--------NVDKNLNEIKEHKIVVLGNSRGV------DAGK 60

Query: 71  S---SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI 127
                  G  S+   + +     L++++  +     +  +              L   + 
Sbjct: 61  GNTFEKVG--SHLYKARLDGHDFLFNTIIRDGSKMLKRADYT------AVDTAKLQMRRF 112

Query: 128 YAGFLSE---VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTY--- 179
             G  +    +K+   D               +   + ++ +   P        G     
Sbjct: 113 ILG--TTEGDIKVL--DSNFNLQREI-----DQAHVSEITKLKFFP---S----GEALIS 156

Query: 180 -S--KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
            S    + ++S  DG     L GH   +T +     G  + S +  D  I  W+    G 
Sbjct: 157 SSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL-DGTIRLWECGT-GT 214

Query: 237 ILHTFPRQVSTNQRVYF--DLTSCSNYLLSGNTNGDLSIW 274
            +HTF R+ + +  V            L   +T+   ++ 
Sbjct: 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 46/282 (16%), Positives = 98/282 (34%), Gaps = 59/282 (20%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
           P    +LT      +             +W    Q      ++++ E  +          
Sbjct: 23  PTEPWVLTTLYSGRVE------------IWNYETQ--VEVRSIQVTETPV---------R 59

Query: 71  S---SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI 127
           +         ++ +  S    I +++   GE    +  +   D +    S+A       +
Sbjct: 60  AGKFIARK--NWIIVGSDDFRIRVFNYNTGEKVVDFEAHP--DYI---RSIAVHPTKPYV 112

Query: 128 YAGFLSE---VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIG 184
            +G  S+   VK+++ +      + +  +    ++ V  +A NP  P   A G   + + 
Sbjct: 113 LSG--SDDLTVKLWNWEN--NWALEQTFEG--HEHFVMCVAFNPKDPSTFASGCLDRTVK 166

Query: 185 LFSDSDGRPLF-FLKGHNGGITHLEFSS--NGILLFSGARKDCEIICWDLRNPGCILHTF 241
           ++S     P F    G   G+ ++++    +   + + +  D  I  WD +     + T 
Sbjct: 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DLTIKIWDYQT-KSCVATL 224

Query: 242 ---PRQVSTNQRVYF--DLTSCSNYLLSGNTNGDLSIWNVNT 278
                 VS      F   L      ++SG+ +G L IWN +T
Sbjct: 225 EGHMSNVSF---AVFHPTLP----IIISGSEDGTLKIWNSST 259

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Length = 814

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 16/131 (12%)

Query: 116 YSLAFSLDGNKIYAGFLSE-VKIFSTDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD 172
             + F      +     S  V+I++ +   +  V        +  +  V A         
Sbjct: 17  KGIDFHPTEPWVLTTLYSGRVEIWNYE--TQVEVRS-----IQVTETPVRAGKF---IAR 66

Query: 173 --ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD 230
                +G+    I +F+ + G  +   + H   I  +        + SG+  D  +  W+
Sbjct: 67  KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-DLTVKLWN 125

Query: 231 LRNPGCILHTF 241
             N   +  TF
Sbjct: 126 WENNWALEQTF 136

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 0/213 (0%), Positives = 0/213 (0%), Gaps = 38/213 (17%)

Query: 89  IHLWDSVGGEIKATYRPYNQV-----DEVTHAYSLAFSLDG-NKIYAGFLSEVKIFSTDR 142
                 +                           +    +   K   G            
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRY---VDIGIPANNKGKQSIG--------CLFW 180

Query: 143 PGR-------ECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFS-DSD 190
                       +    K                         A         +    + 
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAK--EQEEEEAALVAPDYGAVAEYAAP 238

Query: 191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR 250
               +  +                     A                    + +  +    
Sbjct: 239 AADTWGGEWGTDAAAQPAAIPAQAGADWTAA-PAPAAGGWDTA-AAPAPGWEQGSAPVPA 296

Query: 251 VYFDLTSCS-----NYLLSGNTNGDLSIWNVNT 278
                                            
Sbjct: 297 AAPTPNWGE                         329

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 7/138 (5%), Positives = 27/138 (19%), Gaps = 19/138 (13%)

Query: 177 GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC 236
               +  G++  + G+    L+     I  +E   + I+  +        +    +    
Sbjct: 42  VYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPY-GQRAVLKFAQY-TG 99

Query: 237 ILHTFP---RQVSTNQRVYF--DLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQ 291
                        T              +           +       +   +    ++ 
Sbjct: 100 AHAIAGRHTPGTFT---NQLQTS----FSEPRLLILTDPRTDHQPIKESALGNI--PTIA 150

Query: 292 EPLYKFSAHQDCTNGVRW 309
                 +        +  
Sbjct: 151 FCD---TDSPMRYVDIGI 165

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 305

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 7/164 (4%), Positives = 26/164 (15%), Gaps = 19/164 (11%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
             L  +      A    +         ++       ++                  +   
Sbjct: 90  AVLKFAQYTGAHAIAGRHT--PGT---FTNQLQTSFSEPRLL--ILTDPRTDHQPIKESA 142

Query: 146 ECVSRNLKPWFR--KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL-----FFLK 198
                 +             I I   +    ++G    ++          +     + + 
Sbjct: 143 LGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVM 202

Query: 199 GHNGGITHLEFSS-NGILLFSGARKDCEIICWDLRNPGCILHTF 241
                    E +        +           +   P       
Sbjct: 203 VDLFFYRDPEEAKEQEEEEAALVA-PDYGAVAEYAAPAADTWGG 245

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 51/306 (16%), Positives = 90/306 (29%), Gaps = 92/306 (30%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPS-----EL--HCKSVWRPSNQRPKLNYTLKIKEGGIIYD 63
            +   ++T ++D  +R +D  +     +L  H   VW            LK   GGI+  
Sbjct: 130 FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-----------ALKYAHGGILV- 177

Query: 64  YVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD 123
                 + S D  T           + +WD   G     +  +N    V     +    +
Sbjct: 178 ------SGSTDR-T-----------VRVWDIKKGCCTHVFEGHN--STVRCL-DIVEYKN 216

Query: 124 GNKIYAGFLSEVKIFSTDR-------PGRECVSRNLKPWFRKNIVSAIAINP-------- 168
              I  G        S D        P        +     ++    +   P        
Sbjct: 217 IKYIVTG--------SRDNTLHVWKLPKESS----VPDHGEEHDYPLVFHTPEENPYFVG 264

Query: 169 -----------VHPD--ICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGIL 215
                      V     I   G+Y   + ++  +  + L+ L GH   I    +      
Sbjct: 265 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR 324

Query: 216 LFSGARKDCEIICWDLRNPGCILHTF---PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLS 272
             S +  D  I  WDL N G +++T       V     +         +L+S   +G + 
Sbjct: 325 CISASM-DTTIRIWDLEN-GELMYTLQGHTALVGL---LRLS----DKFLVSAAADGSIR 375

Query: 273 IWNVNT 278
            W+ N 
Sbjct: 376 GWDAND 381

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 31/234 (13%), Positives = 64/234 (27%), Gaps = 25/234 (10%)

Query: 11  PDGTCLLTNSNDNHLRTFDL-PSELHCKSVWRPSNQRPKLNYTLKIKE-GGIIYDYVWYP 68
           P+   L     D           ++  K        R   N        GG ++   +  
Sbjct: 156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGF-- 213

Query: 69  KTSSIDGFTSYFLCS-SMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGN 125
              S  G     L      + + +      E   +A          +    SL ++ +  
Sbjct: 214 ---SPSGNA---LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPL---RSLLWANESA 264

Query: 126 KIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGL 185
            + AG+     +   +  G     R+L     K   +         +     +++ +   
Sbjct: 265 IVAAGYNYSPILLQGNESGWAHT-RDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST 323

Query: 186 FSDSDGR----PLFFLKG-HNGGIT---HLEFSSNGILLFSGARKDCEIICWDL 231
           F + D +     +  L   H   I        +   I  F+ +  D  ++ W L
Sbjct: 324 FRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 33/265 (12%), Positives = 67/265 (25%), Gaps = 40/265 (15%)

Query: 89  IHLWDSVGGE----IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTD 141
           I +            K   RP      +    SL +  +   + AG         + S  
Sbjct: 124 ISVCYFEQENDWWVSKHLKRPLR--STIL---SLDWHPNNVLLAAG--CADRKAYVLSAY 176

Query: 142 RPG----RECVSRNLKPWFRKNIVSAIAINPVH-----PDICALGTYS--KIIGLFSDSD 190
                   E      +  F        +   VH     P   AL        + +   S 
Sbjct: 177 VRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA 236

Query: 191 G----RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS 246
                R L  +K     +  L +++   ++ +G   +   I       G          +
Sbjct: 237 PEQPPRALITVKLSQLPLRSLLWANESAIVAAGY--NYSPILLQGNESGWAHTRDLD--A 292

Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG 306
              +  F  T  +            +       N+      +S+       + HQ+    
Sbjct: 293 GTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLP---TVHQNMIAT 349

Query: 307 VRWKHHKFERDLLVADATCS--GQI 329
           +R   +      + A  +    G++
Sbjct: 350 LRP--YAGTPGNITAFTSSGTDGRV 372

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 36/226 (15%)

Query: 89  IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSE---VKIFSTDRPGR 145
           + +WD   GE+  T   +   + V     L F  +   +     S+   + ++    P  
Sbjct: 195 VRVWDVNTGEMLNTLIHHC--EAV---LHLRF--NNGMMVTC--SKDRSIAVWDMASPTD 245

Query: 146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGIT 205
             + R L     +  V+ +             +  + I +++ S    +  L GH  GI 
Sbjct: 246 ITLRRVLV--GHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 300

Query: 206 HLEFSSNGILLFSGARKDCEIICWDLRNPGCIL----HTFPRQVSTNQRVYFDLTSCSNY 261
            L++     L+ SG+  D  I  WD+    C+     H     V     + FD    +  
Sbjct: 301 CLQYR--DRLVVSGSS-DNTIRLWDIECGACLRVLEGHE--ELVRC---IRFD----NKR 348

Query: 262 LLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV 307
           ++SG  +G + +W++  +  P +P   +    L     H      +
Sbjct: 349 IVSGAYDGKIKVWDLVAALDPRAP---AGTLCLRTLVEHSGRVFRL 391

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 39/258 (15%), Positives = 69/258 (26%), Gaps = 80/258 (31%)

Query: 2   DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLN-YTLKIKEGGI 60
           D+   V++    + +     ++ +    +  EL  K     +  R  ++ Y +       
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT---- 458

Query: 61  IYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAF 120
            +D         +D    YF     +   HL                ++      +    
Sbjct: 459 -FDS-DDLIPPYLDQ---YFYSHIGH---HL---------KNIEHPERMTLFRMVF---- 497

Query: 121 SLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS 180
            LD       FL E KI                   R +  +  A   +   +  L  Y 
Sbjct: 498 -LDFR-----FL-EQKI-------------------RHDSTAWNASGSILNTLQQLKFYK 531

Query: 181 KIIGLFSDSDGRP-------LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN 233
             I    D+D +        L FL        +L  S           K  +++   L  
Sbjct: 532 PYI---CDNDPKYERLVNAILDFLPKIE---ENLICS-----------KYTDLLRIALMA 574

Query: 234 P-GCILHTFPRQVSTNQR 250
               I     +QV   QR
Sbjct: 575 EDEAIFEEAHKQV---QR 589

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Length = 330

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 38/247 (15%), Positives = 68/247 (27%), Gaps = 51/247 (20%)

Query: 89  IHLWDSVGGEIKATYRPYNQV-----DEVTHAYSLAFSLDGNKIYAGFLSE---VKI--F 138
           + +W       +        +     +EV     +A+S DG  +     S    V I   
Sbjct: 82  VSIWAKEESADRTFEMDLLAIIEGHENEV---KGVAWSNDGYYLATC--SRDKSVWIWET 136

Query: 139 STDRPGRECVSRNLKPWFR--KNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDG--R 192
                  EC+S       +     V  +     HP   + A  +Y   + ++ D D    
Sbjct: 137 DESGEEYECISV-----LQEHSQDVKHVIW---HPSEALLASSSYDDTVRIWKDYDDDWE 188

Query: 193 PLFFLKGHNGGITHLEFSSNG--ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR 250
            +  L GH G +   +F        L SG+  D  +  W                +    
Sbjct: 189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-DSTVRVWKYMGDDEDDQQEWVCEAILPD 247

Query: 251 --------VYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD 302
                   V +     +  + S   +G L+++             E              
Sbjct: 248 VHKRQVYNVAW---GFNGLIASVGADGVLAVYEEVDG--------EWKVFAKRALCHGVY 296

Query: 303 CTNGVRW 309
             N V+W
Sbjct: 297 EINVVKW 303

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 Length = 393

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 55/202 (27%)

Query: 89  IHLWDSVGGEIKATYRPYNQV-----DEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRP 143
           + +WDS  G +       N+      D V   YS+ F+ DG  + +G        S DR 
Sbjct: 231 VRVWDSETGFLVERLDSENESGTGHKDSV---YSVVFTRDGQSVVSG--------SLDR- 278

Query: 144 GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG 203
                  ++K W                +   L   +      + + G       GH   
Sbjct: 279 -------SVKLW----------------N---LQNANNKSDSKTPNSGTCEVTYIGHKDF 312

Query: 204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL----HTFP-RQV--STNQRVYFDLT 256
           +  +  + N   + SG+ KD  ++ WD ++   +L    H      V  +    +  +  
Sbjct: 313 VLSVATTQNDEYILSGS-KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE-- 369

Query: 257 SCSNYLLSGNTNGDLSIWNVNT 278
              N   +G+ +    IW    
Sbjct: 370 --YNVFATGSGDCKARIWKYKK 389

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.97
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.97
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.94
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.94
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.92
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.9
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.88
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.88
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.87
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.86
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.86
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.86
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.86
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.83
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.82
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.82
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.81
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.81
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.8
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.79
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.79
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.79
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.77
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.77
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.77
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.77
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.76
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.76
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.75
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.73
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.73
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.7
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.7
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.7
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.69
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.69
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.68
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.67
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.66
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.66
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.66
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.65
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.62
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.62
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.6
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.6
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.58
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.58
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.55
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.53
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.52
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.52
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.47
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.47
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.46
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.44
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.42
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.42
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.41
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.4
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.4
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.39
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.36
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.3
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.28
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.28
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.27
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.27
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.26
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.24
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.21
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.17
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.17
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.14
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.12
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.12
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.1
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.1
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.1
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.09
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.06
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.06
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.05
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.05
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.04
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.02
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.99
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.98
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.98
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.98
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.98
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.96
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.95
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.93
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.92
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.89
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.88
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.87
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.87
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.86
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.86
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.85
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.81
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.81
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.8
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.79
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.77
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.72
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.72
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.7
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.69
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.68
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.62
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.59
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.57
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.56
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.55
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.55
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.51
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.49
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.46
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.44
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.44
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.41
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.35
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.34
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.33
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.32
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.28
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.27
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.27
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.24
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.24
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.2
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.17
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.12
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.11
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.99
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.95
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.95
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.94
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.91
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.9
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.77
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.75
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.74
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.7
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.68
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.64
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.63
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.58
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.56
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.38
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.37
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.35
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.33
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.18
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.17
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.13
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.07
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.05
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.03
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.02
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.82
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.77
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.75
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.54
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.51
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.37
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.36
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.33
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.21
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.16
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.58
3ott_A	758	Two-component system sensor histidine kinase; beta	95.49
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.31
3ott_A	758	Two-component system sensor histidine kinase; beta	95.05
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.69
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	91.31
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.22
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.52
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	87.28
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	85.59
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.4
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	85.39
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	82.16
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	80.05

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.7e-50  Score=344.91  Aligned_cols=277  Identities=19%  Similarity=0.211  Sum_probs=251.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|++++|+|++++|++|+.||+|+|||+.+++..              ..+.+ |...|.+++|       +|++++|+
T Consensus       109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~--------------~~l~~-h~~~V~~v~~-------~~~~~~l~  166 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--------------RTLKG-HTDSVQDISF-------DHSGKLLA  166 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--------------EEECC-CSSCEEEEEE-------CTTSSEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--------------EEEec-cCCcEEEEEE-------cCCCCEEE
Confidence            57999999999999999999999999999988765              35544 5678988888       67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +|+.|++|++||+.+++.+..+..|..     .|.+++|+|++++|++++ |+.|++||+++ +....    .+.+|...
T Consensus       167 sgs~D~~i~iwd~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-~~~~~----~~~~h~~~  236 (410)
T 1vyh_C          167 SCSADMTIKLWDFQGFECIRTMHGHDH-----NVSSVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVK----TFTGHREW  236 (410)
T ss_dssp             EEETTSCCCEEETTSSCEEECCCCCSS-----CEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEE----EEECCSSC
T ss_pred             EEeCCCeEEEEeCCCCceeEEEcCCCC-----CEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEE----EEeCCCcc
Confidence            999999999999999998888877665     899999999999999988 99999999997 55555    57889999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccC--------------------CcEEEeee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN--------------------GILLFSGA  220 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~  220 (334)
                      |.++.++|++. +|++|+.|+.|++||+++++....+.+|...|.+++|+|+                    |.+|++++
T Consensus       237 v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          237 VRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  315 (410)
T ss_dssp             EEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             EEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence            99999999999 9999999999999999999999999999999999999996                    67899999


Q ss_pred             cCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccc
Q psy2305         221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH  300 (334)
Q Consensus       221 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  300 (334)
                       .|+.|++||+++ +.++..+.+|  ...+.+++|+|+|++|++++.||.|++||+.++            +.+..+.+|
T Consensus       316 -~D~~i~iwd~~~-~~~~~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~------------~~~~~~~~h  379 (410)
T 1vyh_C          316 -RDKTIKMWDVST-GMCLMTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK------------RCMKTLNAH  379 (410)
T ss_dssp             -TTSEEEEEETTT-TEEEEEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTS------------CCCEEEECC
T ss_pred             -CCCeEEEEECCC-CceEEEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------ceEEEEcCC
Confidence             899999999998 7777888776  667889999999999999999999999999887            677889999


Q ss_pred             ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         301 QDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ...|++++|  +|++    ++|++|+.||+|++
T Consensus       380 ~~~v~~l~~--~~~~----~~l~sgs~D~~i~v  406 (410)
T 1vyh_C          380 EHFVTSLDF--HKTA----PYVVTGSVDQTVKV  406 (410)
T ss_dssp             SSCEEEEEE--CSSS----SCEEEEETTSEEEE
T ss_pred             CCcEEEEEE--cCCC----CEEEEEeCCCcEEE
Confidence            999999999  9999    99999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.9e-50  Score=333.59  Aligned_cols=279  Identities=22%  Similarity=0.278  Sum_probs=245.8

Q ss_pred             CceeEEEEcCC----CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           2 DIEEDVDEAPD----GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         2 d~V~~~~~sp~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      ++|++++|+|+    +.+|++|+.|++|+||++...+..            +...+. .|...|.+++|       ++++
T Consensus        33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~------------~~~~l~-gh~~~v~~~~~-------~~~~   92 (321)
T 3ow8_A           33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD------------LQWSLE-GHQLGVVSVDI-------SHTL   92 (321)
T ss_dssp             SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE------------EEEEEC-CCSSCEEEEEE-------CSSS
T ss_pred             CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee------------eeeeec-cCCCCEEEEEE-------CCCC
Confidence            68999999985    668999999999999999876543            112233 46678888877       6789


Q ss_pred             cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      .++++++.|+.|++||+.+++.+..+..+..     .+.+++|+|++++|++++ ++.|++|+++. ++...    .+..
T Consensus        93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~g~~dg~v~i~~~~~-~~~~~----~~~~  162 (321)
T 3ow8_A           93 PIAASSSLDAHIRLWDLENGKQIKSIDAGPV-----DAWTLAFSPDSQYLATGTHVGKVNIFGVES-GKKEY----SLDT  162 (321)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCTT-----CCCCEEECTTSSEEEEECTTSEEEEEETTT-CSEEE----EEEC
T ss_pred             CEEEEEeCCCcEEEEECCCCCEEEEEeCCCc-----cEEEEEECCCCCEEEEEcCCCcEEEEEcCC-CceeE----EecC
Confidence            9999999999999999999999888876544     788999999999999998 99999999997 44444    4667


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      |...+.+++|+|+++ +|++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++++ .|+.|++||++. +.
T Consensus       163 ~~~~v~~~~~spdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~~-~~  239 (321)
T 3ow8_A          163 RGKFILSIAYSPDGK-YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQH-AN  239 (321)
T ss_dssp             SSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETTT-CC
T ss_pred             CCceEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECCC-cc
Confidence            888999999999999 999999999999999999999999999999999999999999999999 899999999997 66


Q ss_pred             cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~  316 (334)
                      ....+.+|  ...+.+++|+|++++|++++.|++|++||+.++            +.+..+.+|.+.|.+++|  +|++ 
T Consensus       240 ~~~~~~~h--~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~------------~~~~~~~~h~~~v~~v~~--s~~g-  302 (321)
T 3ow8_A          240 LAGTLSGH--ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR------------TCVHTFFDHQDQVWGVKY--NGNG-  302 (321)
T ss_dssp             EEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEE--CTTS-
T ss_pred             eeEEEcCC--CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------------EEEEEEcCCCCcEEEEEE--CCCC-
Confidence            67777766  667899999999999999999999999999997            788889999999999999  9999 


Q ss_pred             cceeeEEeeecceeeee
Q psy2305         317 DLLVADATCSGQITNVK  333 (334)
Q Consensus       317 ~~~~~l~t~~~d~~i~~  333 (334)
                         ++|++++.||+|++
T Consensus       303 ---~~l~s~~~d~~i~v  316 (321)
T 3ow8_A          303 ---SKIVSVGDDQEIHI  316 (321)
T ss_dssp             ---SEEEEEETTCCEEE
T ss_pred             ---CEEEEEeCCCeEEE
Confidence               99999999999875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.7e-49  Score=330.63  Aligned_cols=278  Identities=15%  Similarity=0.158  Sum_probs=242.1

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|+|++++|++|+.||+|++||..+++..              ..+. .+...|.+++|       +|++++|+
T Consensus        56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~--------------~~~~-~~~~~v~~~~~-------s~~~~~l~  113 (340)
T 1got_B           56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV--------------HAIP-LRSSWVMTCAY-------APSGNYVA  113 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE--------------EEEE-CSSSCEEEEEE-------CTTSSEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc--------------eEee-cCCccEEEEEE-------CCCCCEEE
Confidence            57999999999999999999999999999988765              2333 35577888777       67999999


Q ss_pred             EeeCCCcEEEEeCCCCe----eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          82 CSSMYAPIHLWDSVGGE----IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +++.|+.|++|++.+++    ....+..|..     .|.++.|++++. +++++ |+.|++||+.+ +....    .+.+
T Consensus       114 s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~-~~~~~----~~~~  182 (340)
T 1got_B          114 CGGLDNICSIYNLKTREGNVRVSRELAGHTG-----YLSCCRFLDDNQ-IVTSSGDTTCALWDIET-GQQTT----TFTG  182 (340)
T ss_dssp             EEETTCEEEEEETTTCSBSCEEEEEEECCSS-----CEEEEEEEETTE-EEEEETTSCEEEEETTT-TEEEE----EECC
T ss_pred             EEeCCCeEEEEECccCCCcceeEEEecCCCc-----cEEEEEECCCCc-EEEEECCCcEEEEECCC-CcEEE----EEcC
Confidence            99999999999997653    3445555443     899999999886 55555 99999999986 55444    5788


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      |...|.+++|+|+++ ++++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++ .|++|++||++. ..
T Consensus       183 h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~-~~  259 (340)
T 1got_B          183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRA-DQ  259 (340)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-TE
T ss_pred             CCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCC-Cc
Confidence            999999999999999 999999999999999999999999999999999999999999999999 899999999997 55


Q ss_pred             cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~  316 (334)
                      .+..+........+.+++|+|+|++|++|+.||.|++||+.++            +.+..+.+|.+.|.+++|  +|++ 
T Consensus       260 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~--s~dg-  324 (340)
T 1got_B          260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA------------DRAGVLAGHDNRVSCLGV--TDDG-  324 (340)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------------CEEEEEECCSSCEEEEEE--CTTS-
T ss_pred             EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC------------cEeeEeecCCCcEEEEEE--cCCC-
Confidence            5555554333456889999999999999999999999999987            677889999999999999  9999 


Q ss_pred             cceeeEEeeecceeeee
Q psy2305         317 DLLVADATCSGQITNVK  333 (334)
Q Consensus       317 ~~~~~l~t~~~d~~i~~  333 (334)
                         .+|++|+.|++|++
T Consensus       325 ---~~l~s~s~D~~i~i  338 (340)
T 1got_B          325 ---MAVATGSWDSFLKI  338 (340)
T ss_dssp             ---SCEEEEETTSCEEE
T ss_pred             ---CEEEEEcCCccEEe
Confidence               99999999999986

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.5e-48  Score=322.59  Aligned_cols=280  Identities=15%  Similarity=0.202  Sum_probs=242.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|+|++++|++++.||+|++||+.++...              ..+. .+...|.+++|       +|++++|+
T Consensus        14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~--------------~~~~-~~~~~v~~~~~-------~~~~~~l~   71 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--------------RSIQ-VTETPVRAGKF-------IARKNWII   71 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--------------EEEE-CCSSCEEEEEE-------EGGGTEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee--------------EEee-ccCCcEEEEEE-------eCCCCEEE
Confidence            67999999999999999999999999999988765              3444 35577888777       66999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.|+.|++||+.+++.+..+..|..     .|.+++|+|++++|++|+ |++|++||++. +..+..   .+.+|...
T Consensus        72 s~s~d~~i~vwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~-~~~~~~---~~~~h~~~  142 (304)
T 2ynn_A           72 VGSDDFRIRVFNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-NWALEQ---TFEGHEHF  142 (304)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEEGGG-TTEEEE---EECCCCSC
T ss_pred             EECCCCEEEEEECCCCcEEEEEeCCCC-----cEEEEEEcCCCCEEEEECCCCeEEEEECCC-Ccchhh---hhcccCCc
Confidence            999999999999999999988887655     899999999999999998 99999999986 433333   57889999


Q ss_pred             eEEEEEcCC-CCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEcc--CCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         161 VSAIAINPV-HPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSS--NGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       161 v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      |.+++|+|+ +. +|++|+.|++|++||++++.....+. +|...+..+.|+|  ++++|++++ .|++|++||+++ +.
T Consensus       143 v~~v~~~p~~~~-~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~-~~  219 (304)
T 2ynn_A          143 VMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQT-KS  219 (304)
T ss_dssp             EEEEEECTTCTT-EEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTT-TE
T ss_pred             EEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCC-Cc
Confidence            999999995 56 99999999999999998887766654 5667899999987  778999999 899999999998 77


Q ss_pred             cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~  316 (334)
                      ++..+.+|  ...+.+++|+|++++|++++.||+|++||+.++            +.+..+..|...+.+++|  +|++.
T Consensus       220 ~~~~~~~h--~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~------------~~~~~~~~~~~~~~~~~~--~~~~~  283 (304)
T 2ynn_A          220 CVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY------------KVEKTLNVGLERSWCIAT--HPTGR  283 (304)
T ss_dssp             EEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------------CEEEEECCSSSSEEEEEE--CTTCG
T ss_pred             cceeeCCC--CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC------------ceeeeccCCCccEEEEEE--CCCCC
Confidence            78888877  667888999999999999999999999999998            778888889899999999  98871


Q ss_pred             cceeeEEeeecceeeee
Q psy2305         317 DLLVADATCSGQITNVK  333 (334)
Q Consensus       317 ~~~~~l~t~~~d~~i~~  333 (334)
                        ..++++|+.||.+..
T Consensus       284 --~~~~asg~~~g~~~~  298 (304)
T 2ynn_A          284 --KNYIASGFDNGFTVL  298 (304)
T ss_dssp             --GGCEEEEETTEEEEE
T ss_pred             --ceEEEEecCCceEEE
Confidence              026999999987653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.4e-48  Score=326.30  Aligned_cols=279  Identities=12%  Similarity=0.116  Sum_probs=240.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|+|++++||+|+.||+|++||..+++..              ..+. .+...|.+++|       +|++.+|+
T Consensus        65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~--------------~~~~-~~~~~v~~~~~-------sp~g~~la  122 (354)
T 2pbi_B           65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE--------------HAVT-MPCTWVMACAY-------APSGCAIA  122 (354)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--------------EEEE-CSSSCCCEEEE-------CTTSSEEE
T ss_pred             CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcc--------------eEEe-cCCCCEEEEEE-------CCCCCEEE
Confidence            57999999999999999999999999999887765              2333 24456777666       77999999


Q ss_pred             EeeCCCcEEEEeCCCC------eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          82 CSSMYAPIHLWDSVGG------EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      +++.|+.+++|++...      .....+..|..     .|.+++|+|++..|++++ |++|++||+++ ++.+.    .+
T Consensus       123 sg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~-~~~~~----~~  192 (354)
T 2pbi_B          123 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTN-----YLSACSFTNSDMQILTASGDGTCALWDVES-GQLLQ----SF  192 (354)
T ss_dssp             EESTTSEEEEEECCCCTTCCSGGGCEEEEECSS-----CEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEE----EE
T ss_pred             EeeCCCCEEEEEEeccccccccccceeeeccCC-----cEEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CeEEE----EE
Confidence            9999999999998643      22344444433     899999999999999887 99999999987 55555    57


Q ss_pred             cccccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         155 WFRKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      .+|...|.+++|+|+  +. +|++|+.||.|++||+++++++..+.+|...|.+++|+|++++|++++ .|++|++||++
T Consensus       193 ~~h~~~v~~~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~  270 (354)
T 2pbi_B          193 HGHGADVLCLDLAPSETGN-TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS-DDATCRLYDLR  270 (354)
T ss_dssp             ECCSSCEEEEEECCCSSCC-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETT
T ss_pred             cCCCCCeEEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEECC
Confidence            889999999999884  56 999999999999999999999999999999999999999999999999 89999999998


Q ss_pred             CCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccC
Q psy2305         233 NPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHH  312 (334)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s  312 (334)
                      . ...+..+..+.....+.+++|+|++++|++++.|+.|++||+.++            +.+..+.+|.+.|.+++|  +
T Consensus       271 ~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~------------~~~~~l~~h~~~v~~l~~--s  335 (354)
T 2pbi_B          271 A-DREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG------------SRVSILFGHENRVSTLRV--S  335 (354)
T ss_dssp             T-TEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------------SEEEEECCCSSCEEEEEE--C
T ss_pred             C-CcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC------------ceEEEEECCCCcEEEEEE--C
Confidence            7 555555554434456788999999999999999999999999887            677888999999999999  9


Q ss_pred             CCcccceeeEEeeecceeeee
Q psy2305         313 KFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       313 ~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |++    ++|++|+.|++|++
T Consensus       336 pdg----~~l~sgs~D~~v~v  352 (354)
T 2pbi_B          336 PDG----TAFCSGSWDHTLRV  352 (354)
T ss_dssp             TTS----SCEEEEETTSEEEE
T ss_pred             CCC----CEEEEEcCCCCEEe
Confidence            999    99999999999975

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.4e-47  Score=321.19  Aligned_cols=288  Identities=16%  Similarity=0.151  Sum_probs=225.2

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|.+++|+|||++|++++ |+++++||.......    ................+...|.+++|       +|++ .|++
T Consensus        32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~d~-~l~~   98 (344)
T 4gqb_B           32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK----DPCAAPNEGFCSAGVQTEAGVADLTW-------VGER-GILV   98 (344)
T ss_dssp             EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES----SGGGTTCGGGCSEEEEESSCEEEEEE-------ETTT-EEEE
T ss_pred             CEEEEEECCCCCEEEEEe-CCceEEeeceeeeec----cccccCCcceeeeeeccCCCEEEEEE-------eCCC-eEEE
Confidence            589999999999998887 677888863211000    00000000011222234567888888       5575 5789


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEc--CccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYR--PYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++.||+|+|||+.+++....+.  ...|..   .|++++|+|++++|++|+ |+.|++||+.+ ++.+.    .+.+|..
T Consensus        99 ~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~---~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~~~----~~~~h~~  170 (344)
T 4gqb_B           99 ASDSGAVELWELDENETLIVSKFCKYEHDD---IVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLS----SYRAHAA  170 (344)
T ss_dssp             EETTSEEEEEEECTTSSCEEEEEEEECCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEE----EECCCSS
T ss_pred             EECCCEEEEEeccCCCceeEeeccccCCCC---CEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEE----EEcCcCC
Confidence            9999999999999887654433  112333   899999999999999998 99999999996 55555    5789999


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec--cCCCCeEEEEEccC-CcEEEeeecCCCeEEEEEccCCCc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK--GHNGGITHLEFSSN-GILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      .|.+++|+|++..+|++++.|++|++||+++++....+.  .+...+.+++|+|+ +++|++++ .|+.|++||+++ ++
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~-~~  248 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKS-TS  248 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC---
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCC-Cc
Confidence            999999999987689999999999999999999888774  45567999999995 56888999 899999999998 77


Q ss_pred             cceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      ++..+.+|  ...+.+++|+|++ ++|++++.|++|+|||+.++            + +..+.+|.+.|++++|  +|++
T Consensus       249 ~~~~~~~h--~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~------------~-~~~~~~H~~~V~~v~~--sp~~  311 (344)
T 4gqb_B          249 CVLSSAVH--SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS------------E-LFRSQAHRDFVRDATW--SPLN  311 (344)
T ss_dssp             CCEEEECC--SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC------------E-EEEECCCSSCEEEEEE--CSSS
T ss_pred             EEEEEcCC--CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC------------c-EEEEcCCCCCEEEEEE--eCCC
Confidence            78888876  6678999999998 58999999999999999986            3 4467899999999999  9998


Q ss_pred             ccceeeEEeeecceeeee
Q psy2305         316 RDLLVADATCSGQITNVK  333 (334)
Q Consensus       316 ~~~~~~l~t~~~d~~i~~  333 (334)
                      .   .+|+++|.|++|++
T Consensus       312 ~---~llas~s~D~~v~~  326 (344)
T 4gqb_B          312 H---SLLTTVGWDHQVVH  326 (344)
T ss_dssp             T---TEEEEEETTSCEEE
T ss_pred             C---eEEEEEcCCCeEEE
Confidence            2   35779999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=9.1e-47  Score=317.29  Aligned_cols=293  Identities=18%  Similarity=0.230  Sum_probs=234.1

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|++++|+|+|++||+|+.|++|+||++.++...            ....+...|...|.+++|       +|++++|++
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~------------~~~~~~~~h~~~v~~~~~-------sp~g~~l~s   78 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI------------CKSVLSEGHQRTVRKVAW-------SPCGNYLAS   78 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE------------EEEEECSSCSSCEEEEEE-------CTTSSEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce------------eeeeeccccCCcEEEEEE-------CCCCCEEEE
Confidence            6899999999999999999999999999877532            112233457788999888       679999999


Q ss_pred             eeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCe-eeeecccccccc
Q psy2305          83 SSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRE-CVSRNLKPWFRK  158 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~~~~  158 (334)
                      ++.|+.+++|++..+.  .+..+..|..     .|.+++|+|++++|++++ |+.|++||++..... ...   .+.+|.
T Consensus        79 ~s~D~~v~iw~~~~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~h~  150 (345)
T 3fm0_A           79 ASFDATTCIWKKNQDDFECVTTLEGHEN-----EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS---VLNSHT  150 (345)
T ss_dssp             EETTSCEEEEEECCC-EEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE---EECCCC
T ss_pred             EECCCcEEEEEccCCCeEEEEEccCCCC-----CceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE---EecCcC
Confidence            9999999999987764  4566766554     899999999999999998 999999999863221 122   467899


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC--ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR--PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      ..|.+++|+|+++ +|++++.|+.|++||.++++  +...+.+|...|.+++|+|+|++|++++ .|++|++||....+.
T Consensus       151 ~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~~  228 (345)
T 3fm0_A          151 QDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPGN  228 (345)
T ss_dssp             SCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTTC
T ss_pred             CCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCCC
Confidence            9999999999999 99999999999999998774  4567889999999999999999999999 899999999864222


Q ss_pred             c--------------ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc
Q psy2305         237 I--------------LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD  302 (334)
Q Consensus       237 ~--------------~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (334)
                      .              +..+.+ .+...+.+++|+|++..|++++.|+.|++|+.........|.   .........+|..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~---~~~~~~~~~~h~~  304 (345)
T 3fm0_A          229 EQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT---FSLTAHLHQAHSQ  304 (345)
T ss_dssp             TTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC---EEEEEEETTSSSS
T ss_pred             CccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee---EEEEeeecccccC
Confidence            1              112222 135678899999999999999999999999987653211000   0001122357899


Q ss_pred             ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         303 CTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       303 ~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .|++++|  +|+++   .+||+||.||+|++
T Consensus       305 ~V~~v~~--~p~~~---~~laS~s~Dg~v~~  330 (345)
T 3fm0_A          305 DVNCVAW--NPKEP---GLLASCSDDGEVAF  330 (345)
T ss_dssp             CEEEEEE--CSSST---TEEEEEETTSCEEE
T ss_pred             cEeEeEE--eCCCc---eEEEEcCCCCcEEE
Confidence            9999999  99872   38999999999975

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.9e-46  Score=308.28  Aligned_cols=279  Identities=20%  Similarity=0.308  Sum_probs=241.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|+|++++|++++.||.|++|+..+++..              ..+. .|...|.+++|       +|++++|+
T Consensus        24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--------------~~~~-~h~~~v~~~~~-------~~~~~~l~   81 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------------KTIS-GHKLGISDVAW-------SSDSNLLV   81 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--------------EEEC-CCSSCEEEEEE-------CTTSSEEE
T ss_pred             CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc--------------hhhc-cCCCceEEEEE-------cCCCCEEE
Confidence            57999999999999999999999999999888765              3443 45678888888       67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.|+.|++||+.+++.+..+..+..     .|.+++|+|++++|++++ |+.|++||+++ ++...    .+..|..+
T Consensus        82 s~~~d~~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~----~~~~~~~~  151 (312)
T 4ery_A           82 SASDDKTLKIWDVSSGKCLKTLKGHSN-----YVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLK----TLPAHSDP  151 (312)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSCEEEEETTT-CCEEE----EECCCSSC
T ss_pred             EECCCCEEEEEECCCCcEEEEEcCCCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CEEEE----EecCCCCc
Confidence            999999999999999999888887655     899999999999999988 99999999986 55544    56788999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccce
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                      |.+++|+|+++ +|++++.||.|++||+++++.+..+. .+...+..++|+|++++|++++ .|+.|++||+++ ++.+.
T Consensus       152 v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~  228 (312)
T 4ery_A          152 VSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSK-GKCLK  228 (312)
T ss_dssp             EEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTT-TEEEE
T ss_pred             EEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCC-CcEEE
Confidence            99999999999 99999999999999999998877764 4567899999999999999999 899999999997 77777


Q ss_pred             eecccccCCceEEEEe-cCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305         240 TFPRQVSTNQRVYFDL-TSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL  318 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~  318 (334)
                      .+..+..........+ .+++.+|++++.||.|++||+.++            +.+..+.+|.+.|.+++|  +|++   
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~--~p~~---  291 (312)
T 4ery_A          229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK------------EIVQKLQGHTDVVISTAC--HPTE---  291 (312)
T ss_dssp             EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC------------CEEEEECCCSSCEEEEEE--CSSS---
T ss_pred             EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc------------hhhhhhhccCCcEEEEee--cCcC---
Confidence            7776644433333334 467899999999999999999987            778889999999999999  9999   


Q ss_pred             eeeEEeee--cceeeee
Q psy2305         319 LVADATCS--GQITNVK  333 (334)
Q Consensus       319 ~~~l~t~~--~d~~i~~  333 (334)
                       ++|++++  .|++|++
T Consensus       292 -~~l~s~~~~~d~~i~~  307 (312)
T 4ery_A          292 -NIIASAALENDKTIKL  307 (312)
T ss_dssp             -SEEEEEECTTTCCEEE
T ss_pred             -CceEEEEccCCccEEE
Confidence             9999987  6998875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.3e-47  Score=318.76  Aligned_cols=282  Identities=16%  Similarity=0.148  Sum_probs=222.3

Q ss_pred             CceeEEEEcCCCcEEEEeeC------CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305           2 DIEEDVDEAPDGTCLLTNSN------DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~   75 (334)
                      ..|++++|||||++||+++.      |+.|++|+..++....           ........|...|.+++|       +|
T Consensus        43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~-----------~~~~~~~~~~~~V~~~~~-------s~  104 (357)
T 4g56_B           43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE-----------SLCTAGVQTEAGVTDVAW-------VS  104 (357)
T ss_dssp             SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG-----------GGCSEEEECSSCEEEEEE-------ET
T ss_pred             CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce-----------eEecccCCCCCCEEEEEE-------cC
Confidence            46899999999999999997      7889999987765431           001222345677999888       56


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCeeeEE--EcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGEIKAT--YRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      +++ +++++.||+|++||+.+++....  +....|..   .|++++|+|++++|++++ |+.|++||+++ ++...    
T Consensus       105 d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~---~V~~v~~spdg~~l~sgs~dg~v~iwd~~~-~~~~~----  175 (357)
T 4g56_B          105 EKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDD---IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ-KAVLK----  175 (357)
T ss_dssp             TTE-EEEEETTSCEEEC--------CCCCEEECCCSS---CEEEEEECSSSSEEEEEETTSCEEEEETTT-TEEEE----
T ss_pred             CCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCC---CEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEE----
Confidence            776 55677899999999988765422  22122322   899999999999999988 99999999996 55444    


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee--ccCCCCeEEEEEccCC-cEEEeeecCCCeEEEE
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--KGHNGGITHLEFSSNG-ILLFSGARKDCEIICW  229 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iw  229 (334)
                      .+.+|...|++++|+|++..++++++.|+.|++||++++++...+  ..+...+.+++|+|++ .+|++++ .|+.|++|
T Consensus       176 ~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~-~d~~i~~w  254 (357)
T 4g56_B          176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD-ETGNVSLV  254 (357)
T ss_dssp             EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE-SSSCEEEE
T ss_pred             EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee-cccceeEE
Confidence            578899999999999998658999999999999999998876655  4567789999999974 6788899 89999999


Q ss_pred             EccCCCccceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceee
Q psy2305         230 DLRNPGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR  308 (334)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  308 (334)
                      |+++ ++.+..+..+  ...+.+++|+|++ ++|++++.|++|+|||++++            +.+. ..+|.+.|++++
T Consensus       255 d~~~-~~~~~~~~~~--~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~------------~~~~-~~~H~~~V~~va  318 (357)
T 4g56_B          255 NIKN-PDSAQTSAVH--SQNITGLAYSYHSSPFLASISEDCTVAVLDADFS------------EVFR-DLSHRDFVTGVA  318 (357)
T ss_dssp             ESSC-GGGCEEECCC--SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC------------EEEE-ECCCSSCEEEEE
T ss_pred             ECCC-CcEeEEEecc--ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC------------cEeE-ECCCCCCEEEEE
Confidence            9998 7777777766  6678999999987 68999999999999999987            4443 457999999999


Q ss_pred             eccCC-CcccceeeEEeeecceeeee
Q psy2305         309 WKHHK-FERDLLVADATCSGQITNVK  333 (334)
Q Consensus       309 ~~~s~-~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |  +| ++    .+|+++|.||+|++
T Consensus       319 f--sP~d~----~~l~s~s~Dg~v~i  338 (357)
T 4g56_B          319 W--SPLDH----SKFTTVGWDHKVLH  338 (357)
T ss_dssp             E--CSSST----TEEEEEETTSCEEE
T ss_pred             E--eCCCC----CEEEEEcCCCeEEE
Confidence            9  98 78    89999999999976

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-45  Score=314.42  Aligned_cols=291  Identities=19%  Similarity=0.266  Sum_probs=233.6

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCc---ceeeeeeeceeEEEEEEecccceecCCCc
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKL---NYTLKIKEGGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      +.|.+++|+|||++||+|+ ++.+++|++.+++....+..........   .......+...|.+++|       +|+++
T Consensus        65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-------s~dg~  136 (393)
T 1erj_A           65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF-------SPDGK  136 (393)
T ss_dssp             SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE-------CTTSS
T ss_pred             CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEE-------CCCCC
Confidence            4689999999999999986 6789999999988764333221110000   00000011224767666       77999


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +|++++.|+.|++||+.+++.+..+..|..     .|.+++|+|++++|++++ |+.|++||+++ ++...     ...+
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~-----~~~~  205 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMILQGHEQ-----DIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSL-----TLSI  205 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE-----EEEC
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEccCCC-----CEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEE-----EEEc
Confidence            999999999999999999999888887665     899999999999999987 99999999986 44333     2335


Q ss_pred             ccceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEee-------ccCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         158 KNIVSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFL-------KGHNGGITHLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       158 ~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                      ...+.+++|+| +++ +|++|+.|+.|++||+++++.+..+       .+|...|.+++|+|+|++|++++ .|+.|++|
T Consensus       206 ~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~~v~~w  283 (393)
T 1erj_A          206 EDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLW  283 (393)
T ss_dssp             SSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEE
T ss_pred             CCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCCEEEEE
Confidence            67899999999 777 9999999999999999999887776       57899999999999999999999 89999999


Q ss_pred             EccCCC-----------ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceec
Q psy2305         230 DLRNPG-----------CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS  298 (334)
Q Consensus       230 d~~~~~-----------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  298 (334)
                      |++...           .....+.+|  ...+.+++|+|++.+|++++.|+.|++||+.++            +++..+.
T Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~------------~~~~~l~  349 (393)
T 1erj_A          284 NLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG------------NPLLMLQ  349 (393)
T ss_dssp             EC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC------------CEEEEEE
T ss_pred             ECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC------------eEEEEEC
Confidence            997521           122334444  567889999999999999999999999999998            6788899


Q ss_pred             ccccccceeeeccCC------CcccceeeEEeeecceeeee
Q psy2305         299 AHQDCTNGVRWKHHK------FERDLLVADATCSGQITNVK  333 (334)
Q Consensus       299 ~~~~~i~~~~~~~s~------~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +|...|.+++|  ++      ++    ++||+|+.||+|++
T Consensus       350 ~h~~~v~~v~~--~~~~~~~p~~----~~l~sgs~Dg~i~i  384 (393)
T 1erj_A          350 GHRNSVISVAV--ANGSSLGPEY----NVFATGSGDCKARI  384 (393)
T ss_dssp             CCSSCEEEEEE--CSSCTTCTTC----EEEEEEETTSEEEE
T ss_pred             CCCCCEEEEEe--cCCcCcCCCC----CEEEEECCCCcEEE
Confidence            99999999998  65      68    89999999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.3e-47  Score=321.68  Aligned_cols=283  Identities=15%  Similarity=0.215  Sum_probs=231.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|+|++++|++|+.|++|+|||+.+++..              ..+.. |...|.+++|       +|++++|+
T Consensus        67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~--------------~~~~~-h~~~v~~~~~-------s~~g~~la  124 (380)
T 3iz6_a           67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT--------------HAIKL-HCPWVMECAF-------APNGQSVA  124 (380)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE--------------EEEEC-CCTTCCCCEE-------CTTSSEEE
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc--------------eEEec-CCCCEEEEEE-------CCCCCEEE
Confidence            57999999999999999999999999999988765              34443 4456666555       78999999


Q ss_pred             EeeCCCcEEEEeCCCCe-------eeEEEcCccccccccceeEEEEcCCC-CEEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305          82 CSSMYAPIHLWDSVGGE-------IKATYRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      +++.|+.+++||+.+..       ....+..|..     .|.++.|+|++ ..|++++ |++|++||+.+ ++.......
T Consensus       125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~-----~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~-~~~~~~~~~  198 (380)
T 3iz6_a          125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG-----YASSCQYVPDQETRLITGSGDQTCVLWDVTT-GQRISIFGS  198 (380)
T ss_dssp             ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSS-----CCCCCBCCSSSSSCEEEECTTSCEEEECTTT-CCEEEEECC
T ss_pred             EeeCCCcEEEEECCCCccccCCccceeeccCCCc-----ceEEEEEecCCCCEEEEECCCCcEEEEEcCC-CcEEEEeec
Confidence            99999999999986532       1223344333     78899999975 5688887 99999999997 554432110


Q ss_pred             -cccccccceEEEEEcC-CCCcEEEEeecCCeEEEEECC-CCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         153 -KPWFRKNIVSAIAINP-VHPDICALGTYSKIIGLFSDS-DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       153 -~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                       ...+|...|.+++|++ ++. +|++|+.|+.|++||++ .++.+..+.+|.+.|.+++|+|++++|++++ .|++|++|
T Consensus       199 ~~~~~h~~~v~~~~~~~~~~~-~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~lw  276 (380)
T 3iz6_a          199 EFPSGHTADVLSLSINSLNAN-MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS-DDGTCRLF  276 (380)
T ss_dssp             CSSSSCCSCEEEEEECSSSCC-EEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC-SSSCEEEE
T ss_pred             ccCCCCccCeEEEEeecCCCC-EEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc-CCCeEEEE
Confidence             1267899999999987 566 99999999999999998 4578888999999999999999999999999 89999999


Q ss_pred             EccCCCccceeeccccc-----CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee----ccc
Q psy2305         230 DLRNPGCILHTFPRQVS-----TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF----SAH  300 (334)
Q Consensus       230 d~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~  300 (334)
                      |+++ +..+..+..+..     ...+.+++|+|+|++|++|+.||.|++||+..+            +....+    .+|
T Consensus       277 d~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~------------~~~~~~~~~~~~h  343 (380)
T 3iz6_a          277 DMRT-GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA------------EMVLNLGTLQNSH  343 (380)
T ss_dssp             ETTT-TEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC------------CEEEEECCSCSSC
T ss_pred             ECCC-CcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC------------ceEEEEecccCCC
Confidence            9998 666666554321     123678999999999999999999999999887            444444    679


Q ss_pred             ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         301 QDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+.|.+++|  +|++    ++|++||.|++|++
T Consensus       344 ~~~v~~l~~--s~dg----~~l~sgs~D~~i~i  370 (380)
T 3iz6_a          344 EGRISCLGL--SSDG----SALCTGSWDKNLKI  370 (380)
T ss_dssp             CCCCCEEEE--CSSS----SEEEEECTTSCEEE
T ss_pred             CCceEEEEE--CCCC----CEEEEeeCCCCEEE
Confidence            999999999  9999    99999999999976

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-44  Score=304.28  Aligned_cols=295  Identities=17%  Similarity=0.215  Sum_probs=230.8

Q ss_pred             CceeEEEE-----cC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305           2 DIEEDVDE-----AP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         2 d~V~~~~~-----sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~   75 (334)
                      +.|++++|     ++ ++++|++|+.|++|++||+...+...       ........+. .|...|.+++|       +|
T Consensus        22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~-------~~~~~~~~l~-~h~~~V~~~~~-------~~   86 (343)
T 2xzm_R           22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG-------YFGIPHKALT-GHNHFVSDLAL-------SQ   86 (343)
T ss_dssp             SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS-------BSEEEEEEEC-CCSSCEEEEEE-------CS
T ss_pred             hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc-------ccccccchhc-cCCCceEEEEE-------CC
Confidence            67999999     77 99999999999999999987653210       0000112333 46678988887       67


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      ++.++++++.|++|++||+.+++.+..+..|..     .|.+++|+|++++|++++ |+.|++||+..  ....... ..
T Consensus        87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~-----~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~--~~~~~~~-~~  158 (343)
T 2xzm_R           87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS-----EVYSVAFSPDNRQILSAGAEREIKLWNILG--ECKFSSA-EK  158 (343)
T ss_dssp             STTEEEEEETTSEEEEEETTSSCEEEEEECCCS-----CEEEEEECSSTTEEEEEETTSCEEEEESSS--CEEEECC-TT
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC-----cEEEEEECCCCCEEEEEcCCCEEEEEeccC--Cceeeee-cc
Confidence            999999999999999999999999888887655     899999999999999987 99999999973  3322211 23


Q ss_pred             cccccceEEEEEcCCC----------CcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305         155 WFRKNIVSAIAINPVH----------PDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                      ..|...|.+++|+|++          . +|++++.|+.|++|| .+.+....+.+|...|.+++|+|+|++|++++ .|+
T Consensus       159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs-~dg  235 (343)
T 2xzm_R          159 ENHSDWVSCVRYSPIMKSANKVQPFAP-YFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGG-KDK  235 (343)
T ss_dssp             TSCSSCEEEEEECCCCCSCSCCCSSCC-EEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-TTC
T ss_pred             cCCCceeeeeeeccccccccccCCCCC-EEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEc-CCC
Confidence            4788999999999987          5 899999999999999 45667778899999999999999999999999 899


Q ss_pred             eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCC--CCCccccccccceeccccc
Q psy2305         225 EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPS--SPYEESVQEPLYKFSAHQD  302 (334)
Q Consensus       225 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~  302 (334)
                      .|++||+.........+.   ....+.+++|+|++.+++++ .|+.|++||+.++....  .... ..........+|..
T Consensus       236 ~v~iwd~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  310 (343)
T 2xzm_R          236 KLLIWDILNLTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEA-EPITKAEGQKGKNP  310 (343)
T ss_dssp             EEEEEESSCCSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCC-CSGGGBTTBCCSCC
T ss_pred             eEEEEECCCCcccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeec-CcchhhhhhcCCCC
Confidence            999999965344444443   24468899999999888755 57889999998764320  0000 00000112236778


Q ss_pred             ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         303 CTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       303 ~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .|.+++|  +|++    ++|++|+.||+|++
T Consensus       311 ~v~~~~~--sp~g----~~l~sg~~Dg~v~~  335 (343)
T 2xzm_R          311 QCTSLAW--NALG----KKLFAGFTDGVIRT  335 (343)
T ss_dssp             CEEEEEE--CSSS----CCEEEEETTSEEEE
T ss_pred             ceEEEEE--CCCC----CeEEEecCCceEEE
Confidence            8999999  9999    99999999999875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.5e-45  Score=329.27  Aligned_cols=298  Identities=14%  Similarity=0.177  Sum_probs=227.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCce--eeeeCCC----------CC--------------------CCCc
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHC--KSVWRPS----------NQ--------------------RPKL   49 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~--~~~~~~~----------~~--------------------~~~~   49 (334)
                      +.|++++|+|+|++||+|+.|++|+|||+.+++..  ..+....          ..                    ....
T Consensus        60 ~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~  139 (611)
T 1nr0_A           60 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS  139 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred             CceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC
Confidence            56999999999999999999999999998754321  1111000          00                    0000


Q ss_pred             ceeeeeeeceeEEEEEEecccceecCCCc-EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE
Q psy2305          50 NYTLKIKEGGIIYDYVWYPKTSSIDGFTS-YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY  128 (334)
Q Consensus        50 ~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  128 (334)
                      ...+. .|...|.+++|       +|++. .|++++.|++|++||..+++....+..|..     .|.+++|+|++++|+
T Consensus       140 ~~~l~-gh~~~v~~v~f-------~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~-----~V~~v~fspdg~~la  206 (611)
T 1nr0_A          140 NGNLT-GQARAMNSVDF-------KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-----FVHSVRYNPDGSLFA  206 (611)
T ss_dssp             CBCCC-CCSSCEEEEEE-------CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS-----CEEEEEECTTSSEEE
T ss_pred             cceec-CCCCCceEEEE-------CCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC-----ceEEEEECCCCCEEE
Confidence            01111 23445555555       67876 599999999999999999988888887655     899999999999999


Q ss_pred             Eee-CCcEEEEEcCCCCCeeeeec---ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE---------
Q psy2305         129 AGF-LSEVKIFSTDRPGRECVSRN---LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF---------  195 (334)
Q Consensus       129 ~~~-d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---------  195 (334)
                      +++ |++|++||+.+ ++......   +...+|...|.+++|+|+++ +|++++.|++|++||+++++.+.         
T Consensus       207 s~s~D~~i~lwd~~~-g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~  284 (611)
T 1nr0_A          207 STGGDGTIVLYNGVD-GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIE  284 (611)
T ss_dssp             EEETTSCEEEEETTT-CCEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred             EEECCCcEEEEECCC-CcEeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCcc
Confidence            988 99999999986 54444210   01127999999999999999 99999999999999998765443         


Q ss_pred             ----------------------------------eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceee
Q psy2305         196 ----------------------------------FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       196 ----------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                                                        .+.+|...|.+++|+|+|++|++++ .|+.|++||+.+ +.....+
T Consensus       285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~-~~~~~~~  362 (611)
T 1nr0_A          285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDIST-GISNRVF  362 (611)
T ss_dssp             GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-CCEEECS
T ss_pred             ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCC-Cceeeec
Confidence                                              3457889999999999999999999 899999999875 2221111


Q ss_pred             c-cc----------------------------------------------------------------------------
Q psy2305         242 P-RQ----------------------------------------------------------------------------  244 (334)
Q Consensus       242 ~-~~----------------------------------------------------------------------------  244 (334)
                      . .|                                                                            
T Consensus       363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~  442 (611)
T 1nr0_A          363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL  442 (611)
T ss_dssp             SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred             ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCce
Confidence            0 00                                                                            


Q ss_pred             ---ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceee
Q psy2305         245 ---VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVA  321 (334)
Q Consensus       245 ---~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~  321 (334)
                         .....+.+++|+|+|++|++|+.|++|++||+..+..          ..... .+|...|++++|  +|++    ++
T Consensus       443 ~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~----------~~~~~-~~h~~~v~~v~f--spdg----~~  505 (611)
T 1nr0_A          443 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV----------SEVKT-IVHPAEITSVAF--SNNG----AF  505 (611)
T ss_dssp             EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE----------EEEEE-EECSSCEEEEEE--CTTS----SE
T ss_pred             eeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce----------eeeec-cCCCCceEEEEE--CCCC----CE
Confidence               0012356789999999999999999999999987521          12233 678899999999  9999    99


Q ss_pred             EEeeecceeeee
Q psy2305         322 DATCSGQITNVK  333 (334)
Q Consensus       322 l~t~~~d~~i~~  333 (334)
                      |++++.|+++++
T Consensus       506 las~s~d~~v~~  517 (611)
T 1nr0_A          506 LVATDQSRKVIP  517 (611)
T ss_dssp             EEEEETTSCEEE
T ss_pred             EEEEcCCCCEEE
Confidence            999999999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-45  Score=306.47  Aligned_cols=283  Identities=19%  Similarity=0.235  Sum_probs=222.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceee-eeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTL-KIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      ++|++++|+|+  +||+|+.|++|++|++..+...            ....+ ...|...|.+++|       +|++++|
T Consensus        15 ~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~------------~~~~~~~~~h~~~v~~v~~-------sp~~~~l   73 (330)
T 2hes_X           15 EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT------------LIDVLDETAHKKAIRSVAW-------RPHTSLL   73 (330)
T ss_dssp             SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE------------EEEEECTTCCCSCEEEEEE-------CTTSSEE
T ss_pred             CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE------------EEEEEecCCccCCEEEEEE-------CCCCCEE
Confidence            57999999998  9999999999999999875422            11233 2237788999888       6699999


Q ss_pred             EEeeCCCcEEEEeCCC-------CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCe--eeee
Q psy2305          81 LCSSMYAPIHLWDSVG-------GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRE--CVSR  150 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~--~~~~  150 (334)
                      ++++.|++|++||+..       .+.+..+..|..     .|.+++|+|++++|++++ |+.|++||++..+..  ... 
T Consensus        74 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~-  147 (330)
T 2hes_X           74 AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN-----EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECIS-  147 (330)
T ss_dssp             EEEETTSCEEEEEC-------CCCEEEEEEC---------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEE-
T ss_pred             EEEeCCCcEEEEEcccCcCccccceeEEEEcCCCC-----cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEE-
Confidence            9999999999999853       345566666544     899999999999999998 999999999542322  222 


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC--CceEeeccCCCCeEEEEEccC--CcEEEeeecCCCeE
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG--RPLFFLKGHNGGITHLEFSSN--GILLFSGARKDCEI  226 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~d~~i  226 (334)
                        .+.+|...|.+++|+|++. +|++++.|++|++||.+++  +++..+.+|.+.|.+++|+|+  +.+|++++ .|++|
T Consensus       148 --~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~D~~v  223 (330)
T 2hes_X          148 --VLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-DDSTV  223 (330)
T ss_dssp             --EECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-TTSCE
T ss_pred             --EeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-CCCeE
Confidence              4678999999999999999 9999999999999998776  678889999999999999998  67899999 89999


Q ss_pred             EEEEccCCC-------ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccc-ceec
Q psy2305         227 ICWDLRNPG-------CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL-YKFS  298 (334)
Q Consensus       227 ~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~  298 (334)
                      ++||++...       .....+.. .+...+.+++|++++ +|++++.||.|++||..+++.          +.. ..+.
T Consensus       224 ~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~----------~~~~~~~~  291 (330)
T 2hes_X          224 RVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEW----------KVFAKRAL  291 (330)
T ss_dssp             EEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEE----------EEEEEESC
T ss_pred             EEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCce----------EEEecccc
Confidence            999997521       12222222 136678999999765 899999999999999877521          122 2335


Q ss_pred             cccc-ccceeeeccCC--CcccceeeEEeeecceeeee
Q psy2305         299 AHQD-CTNGVRWKHHK--FERDLLVADATCSGQITNVK  333 (334)
Q Consensus       299 ~~~~-~i~~~~~~~s~--~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +|.. .|..++|  +|  ++    ++||+++.||+|++
T Consensus       292 ~h~~~~v~~v~~--~~~~~~----~~las~s~Dg~v~~  323 (330)
T 2hes_X          292 CHGVYEINVVKW--LELNGK----TILATGGDDGIVNF  323 (330)
T ss_dssp             TTTTSCEEEEEE--C---------CCEEEEETTSEEEE
T ss_pred             ccccceEEEEEE--ecCCCc----eEEEEecCCCcEEE
Confidence            6776 8999999  99  68    89999999999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6.9e-45  Score=302.57  Aligned_cols=279  Identities=16%  Similarity=0.205  Sum_probs=234.3

Q ss_pred             CceeEEEEcCCC-cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDG-TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +.|.+++|+|++ ++|++|+.|++|++|++.......         ......+. .|...|.+++|       +|++++|
T Consensus        18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---------~~~~~~~~-~h~~~v~~~~~-------s~dg~~l   80 (319)
T 3frx_A           18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---------GVPVRSFK-GHSHIVQDCTL-------TADGAYA   80 (319)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE---------EEEEEEEE-CCSSCEEEEEE-------CTTSSEE
T ss_pred             ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc---------cccceEEe-CCcccEEEEEE-------CCCCCEE
Confidence            579999999965 899999999999999986543210         00112333 46678888877       7799999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++++.|++|++||+.+++.+..+..|..     .|.+++|+|++.+|++++ |+.|++||++  +..+.    .+.+|..
T Consensus        81 ~s~s~D~~v~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~D~~i~vwd~~--~~~~~----~~~~h~~  149 (319)
T 3frx_A           81 LSASWDKTLRLWDVATGETYQRFVGHKS-----DVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLA----TLLGHND  149 (319)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSCEEEEEETTSCEEEEETT--SCEEE----EECCCSS
T ss_pred             EEEeCCCEEEEEECCCCCeeEEEccCCC-----cEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEE----EEeccCC
Confidence            9999999999999999999998887665     899999999999999998 9999999997  44444    5778999


Q ss_pred             ceEEEEEcCC------CCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         160 IVSAIAINPV------HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       160 ~v~~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      .|.++.|+|.      +. .+++++.|+.|++||+++.+....+.+|...|.+++|+|+|++|++++ .|+.|++||++.
T Consensus       150 ~v~~~~~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iwd~~~  227 (319)
T 3frx_A          150 WVSQVRVVPNEKADDDSV-TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLWNLAA  227 (319)
T ss_dssp             CEEEEEECCC------CC-EEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEEETTT
T ss_pred             cEEEEEEccCCCCCCCcc-EEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Confidence            9999999985      44 799999999999999999999999999999999999999999999999 899999999997


Q ss_pred             CCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee--------cccccccc
Q psy2305         234 PGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF--------SAHQDCTN  305 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~  305 (334)
                       ++.+..+..   ...+.+++|+|++.+|++++.+ .+++|++....            .+..+        ..|...+.
T Consensus       228 -~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~------------~~~~~~~~~~~~~~~~~~~v~  290 (319)
T 3frx_A          228 -KKAMYTLSA---QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQY------------LVDDLRPEFAGYSKAAEPHAV  290 (319)
T ss_dssp             -TEEEEEEEC---CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEE------------EEEEECCCCTTCCGGGCCCEE
T ss_pred             -CcEEEEecC---CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCe------------eeeccCccccccccCcCccee
Confidence             666666654   3568899999999999988755 59999998752            22222        23556789


Q ss_pred             eeeeccCCCcccceeeEEeeecceeeee
Q psy2305         306 GVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       306 ~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +++|  +|++    ++|++|+.||.|++
T Consensus       291 ~~~~--spdg----~~l~sg~~Dg~i~v  312 (319)
T 3frx_A          291 SLAW--SADG----QTLFAGYTDNVIRV  312 (319)
T ss_dssp             EEEE--CTTS----SEEEEEETTSCEEE
T ss_pred             EEEE--CCCC----CEEEEeecCceEEE
Confidence            9999  9999    99999999999875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.5e-44  Score=324.45  Aligned_cols=294  Identities=16%  Similarity=0.193  Sum_probs=229.4

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|+|||++||+++.|++|++||+.+++....+....        .....|...|.+++|       +|++++|+
T Consensus       191 ~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~--------~~~~~h~~~V~~v~~-------spdg~~l~  255 (611)
T 1nr0_A          191 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--------LKNVAHSGSVFGLTW-------SPDGTKIA  255 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT--------SSSCSSSSCEEEEEE-------CTTSSEEE
T ss_pred             CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc--------ccccccCCCEEEEEE-------CCCCCEEE
Confidence            469999999999999999999999999998887652110000        000146788999888       67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCcc--------------------------------------ccccccceeEEEEcCC
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYN--------------------------------------QVDEVTHAYSLAFSLD  123 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~--------------------------------------~~~~~~~v~~~~~~~~  123 (334)
                      +++.|++|++||+.+++.+..+....                                      ...+...|++++|+|+
T Consensus       256 s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd  335 (611)
T 1nr0_A          256 SASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD  335 (611)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC
Confidence            99999999999999887766553210                                      0112237999999999


Q ss_pred             CCEEEEee-CCcEEEEEcCCCCCeeeeec---------------------------------------------------
Q psy2305         124 GNKIYAGF-LSEVKIFSTDRPGRECVSRN---------------------------------------------------  151 (334)
Q Consensus       124 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~---------------------------------------------------  151 (334)
                      +++|++++ |+.|++||+.+ +.......                                                   
T Consensus       336 g~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~  414 (611)
T 1nr0_A          336 GKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP  414 (611)
T ss_dssp             SSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCE
T ss_pred             CCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCC
Confidence            99999998 99999999875 22111000                                                   


Q ss_pred             ---------------------------ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc--eEeeccCCC
Q psy2305         152 ---------------------------LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP--LFFLKGHNG  202 (334)
Q Consensus       152 ---------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~  202 (334)
                                                 +....|...+.+++|+|+|+ +|++|+.|++|++||+.+++.  ... .+|..
T Consensus       415 ~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~-~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~  492 (611)
T 1nr0_A          415 LGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPA  492 (611)
T ss_dssp             EEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEE-EECSS
T ss_pred             cEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC-EEEEeCCCCeEEEEEccCCceeeeec-cCCCC
Confidence                                       00001234578999999999 999999999999999977643  233 67999


Q ss_pred             CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee-ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCC
Q psy2305         203 GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT-FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL  281 (334)
Q Consensus       203 ~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  281 (334)
                      .|.+++|+|+|++|++++ .|++|++||+.+.++.... ... .+...+.+++|+|+|++|++++.|++|++||+..+. 
T Consensus       493 ~v~~v~fspdg~~las~s-~d~~v~~w~~~~~~~~~~~~~~~-~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~-  569 (611)
T 1nr0_A          493 EITSVAFSNNGAFLVATD-QSRKVIPYSVANNFELAHTNSWT-FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS-  569 (611)
T ss_dssp             CEEEEEECTTSSEEEEEE-TTSCEEEEEGGGTTEESCCCCCC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT-
T ss_pred             ceEEEEECCCCCEEEEEc-CCCCEEEEEcCCCCceeeeeeee-ecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc-
Confidence            999999999999999999 8999999999863333332 111 136789999999999999999999999999998863 


Q ss_pred             CCCCCcccccccc-ceeccc-ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         282 PSSPYEESVQEPL-YKFSAH-QDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       282 ~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                                +.. ..+.+| ...|.+++|  +|++    + |++++.|++|++
T Consensus       570 ----------~~~~~~~~~h~~~~v~~v~f--s~d~----~-l~s~~~D~~i~l  606 (611)
T 1nr0_A          570 ----------DHPIIIKGAHAMSSVNSVIW--LNET----T-IVSAGQDSNIKF  606 (611)
T ss_dssp             ----------SCCEEETTSSTTSCEEEEEE--EETT----E-EEEEETTSCEEE
T ss_pred             ----------cccchhhccCcccCeeEEEE--cCCC----E-EEEecCCCCEEE
Confidence                      223 566788 789999999  9999    8 999999999975

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1e-43  Score=318.92  Aligned_cols=271  Identities=20%  Similarity=0.287  Sum_probs=239.1

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++|+|++++|++++.|+.|++||.......               .+. .+...+.+++|       +|++++|+
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~---------------~~~-~~~~~v~~~~~-------s~~g~~l~  360 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ---------------TLT-GHSSSVWGVAF-------SPDGQTIA  360 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE---------------EEC-CCSSCEEEEEE-------CTTSSEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE---------------EEe-CCCCCEEEEEE-------CCCCCEEE
Confidence            46899999999999999999999999998765542               333 35577887777       77999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.|+.|++||. +++.+..+..+..     .|.+++|+|++++|++++ |+.|++||..  ++.+.    .+.+|...
T Consensus       361 ~~~~dg~v~~~~~-~~~~~~~~~~~~~-----~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~~~----~~~~~~~~  428 (577)
T 2ymu_A          361 SASDDKTVKLWNR-NGQLLQTLTGHSS-----SVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQ----TLTGHSSS  428 (577)
T ss_dssp             EEETTSEEEEEET-TCCEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSEEEEECTT--CCEEE----EEECCSSC
T ss_pred             EEeCCCEEEEEcC-CCCEEEEecCCCC-----CeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEE----EecCCCCC
Confidence            9999999999995 6677777776554     899999999999999987 9999999965  55555    57889999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      |++++|+|+++ +|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++ .|+.|++||..  ++.+..
T Consensus       429 v~~~~~s~d~~-~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~-~d~~i~iw~~~--~~~~~~  503 (577)
T 2ymu_A          429 VWGVAFSPDDQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRN--GQLLQT  503 (577)
T ss_dssp             EEEEEECTTSS-EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEE-TTSEEEEEETT--SCEEEE
T ss_pred             eEEEEECCCCC-EEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCEEEEEcCC--CCEEEE
Confidence            99999999999 9999999999999996 6788889999999999999999999999999 89999999964  677788


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV  320 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~  320 (334)
                      +.+|  ...+.+++|+|+|++|++++.||.|++||.. +            +.+..+.+|.+.|++++|  +||+    +
T Consensus       504 ~~~h--~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~------------~~~~~~~~h~~~v~~~~f--s~dg----~  562 (577)
T 2ymu_A          504 LTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G------------QLLQTLTGHSSSVWGVAF--SPDG----Q  562 (577)
T ss_dssp             EECC--SSCEEEEEECTTSSCEEEEETTSEEEEECTT-S------------CEEEEEECCSSCEEEEEE--CTTS----S
T ss_pred             EeCC--CCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-C------------CEEEEEcCCCCCEEEEEE--cCCC----C
Confidence            8776  6678999999999999999999999999964 3            678889999999999999  9999    9


Q ss_pred             eEEeeecceeeee
Q psy2305         321 ADATCSGQITNVK  333 (334)
Q Consensus       321 ~l~t~~~d~~i~~  333 (334)
                      +|+|++.|++|++
T Consensus       563 ~l~s~~~D~~i~~  575 (577)
T 2ymu_A          563 TIASASSDKTVKL  575 (577)
T ss_dssp             CEEEEETTSCEEE
T ss_pred             EEEEEeCCCEEEE
Confidence            9999999999875

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.7e-43  Score=293.21  Aligned_cols=246  Identities=13%  Similarity=0.104  Sum_probs=202.1

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|.+++|+|++ +|++|+.||+|+|||+.+++...           .......+|...|++++|       +|++++|+
T Consensus        83 ~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~-----------~~~~~~~~H~~~V~~v~~-------spdg~~l~  143 (344)
T 4gqb_B           83 AGVADLTWVGER-GILVASDSGAVELWELDENETLI-----------VSKFCKYEHDDIVSTVSV-------LSSGTQAV  143 (344)
T ss_dssp             SCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE-----------EEEEEEECCSSCEEEEEE-------CTTSSEEE
T ss_pred             CCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee-----------EeeccccCCCCCEEEEEE-------CCCCCEEE
Confidence            358999999986 68899999999999999887541           011222356788999888       67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +++.|++|++||+.+++.+..+..|..     .|.+++|+|++. +|++++ |+.|++||+++ ++.....  ....+..
T Consensus       144 sgs~d~~i~iwd~~~~~~~~~~~~h~~-----~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~--~~~~~~~  215 (344)
T 4gqb_B          144 SGSKDICIKVWDLAQQVVLSSYRAHAA-----QVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQI--GCSAPGY  215 (344)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSCEEEC--C----CC
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCcCC-----ceEEEEecCCCCCceeeeccccccccccccc-cceeeee--ecceeec
Confidence            999999999999999999999987665     899999999985 677777 99999999997 4444421  2345667


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC-cEEEeeecCCCeEEEEEccCCCccc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      .+.+++|+|++..+|++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++++ .|++|++||+++ ++ +
T Consensus       216 ~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~-~~-~  292 (344)
T 4gqb_B          216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSL-SE-L  292 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTC-CE-E
T ss_pred             cceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCC-Cc-E
Confidence            899999999765589999999999999999999999999999999999999998 5789999 899999999986 54 3


Q ss_pred             eeecccccCCceEEEEecCCCc-eEEeeecCCcEEEEeCCCC
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~  279 (334)
                      ..+.+|  ...+.+++|+|+++ +|++++.|++|++|++.+.
T Consensus       293 ~~~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          293 FRSQAH--RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEECCC--SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EEEcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            445555  67899999999986 5678999999999999885

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.2e-43  Score=291.81  Aligned_cols=239  Identities=15%  Similarity=0.204  Sum_probs=212.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|.+++|+|++.++++++.|++|++||+.+++..              ..+.. +...+.+++|       +|++++|+
T Consensus        81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~--------------~~~~~-~~~~~~~~~~-------spdg~~l~  138 (321)
T 3ow8_A           81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQI--------------KSIDA-GPVDAWTLAF-------SPDSQYLA  138 (321)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--------------EEEEC-CTTCCCCEEE-------CTTSSEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEE--------------EEEeC-CCccEEEEEE-------CCCCCEEE
Confidence            46899999999999999999999999999988765              23332 3345555555       78999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.|+.|++|++.+++....+..+..     .|.+++|+|++++|++++ |+.|++||+++ ++.+.    .+.+|..+
T Consensus       139 ~g~~dg~v~i~~~~~~~~~~~~~~~~~-----~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~----~~~~h~~~  208 (321)
T 3ow8_A          139 TGTHVGKVNIFGVESGKKEYSLDTRGK-----FILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLH----TLEGHAMP  208 (321)
T ss_dssp             EECTTSEEEEEETTTCSEEEEEECSSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEE----EECCCSSC
T ss_pred             EEcCCCcEEEEEcCCCceeEEecCCCc-----eEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEE----EEcccCCc
Confidence            999999999999999988887776554     799999999999999998 99999999986 55554    57889999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      |.+++|+|+++ +|++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++ .|++|++||+++ +.++..
T Consensus       209 v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~-~~~~~~  285 (321)
T 3ow8_A          209 IRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGT-RTCVHT  285 (321)
T ss_dssp             CCEEEECTTSC-EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-TEEEEE
T ss_pred             eeEEEEcCCCC-EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCC-CEEEEE
Confidence            99999999999 999999999999999999999999999999999999999999999999 899999999998 777888


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN  277 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  277 (334)
                      +..|  ...+.+++|+|++++|++++.||.|++||..
T Consensus       286 ~~~h--~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          286 FFDH--QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ECCC--SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EcCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            8776  6678999999999999999999999999964

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-42  Score=291.83  Aligned_cols=280  Identities=16%  Similarity=0.155  Sum_probs=241.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|++++|+|++++|++++.||.|++||+.+++..              ..+. .|...|.+++|       +|++++|+
T Consensus        33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--------------~~~~-~h~~~v~~~~~-------~~~~~~l~   90 (369)
T 3zwl_B           33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL--------------GTLD-GHTGTIWSIDV-------DCFTKYCV   90 (369)
T ss_dssp             SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEE--------------EEEC-CCSSCEEEEEE-------CTTSSEEE
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh--------------hhhh-hcCCcEEEEEE-------cCCCCEEE
Confidence            57999999999999999999999999999988765              3443 35678988888       67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEcCCCCCeeeee-----
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFSTDRPGRECVSR-----  150 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~-----  150 (334)
                      +++.|+.|++||+.+++.+..+.. ..     .+.+++|+|++++|+++. +     +.|++||+..........     
T Consensus        91 s~~~dg~i~iwd~~~~~~~~~~~~-~~-----~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~  164 (369)
T 3zwl_B           91 TGSADYSIKLWDVSNGQCVATWKS-PV-----PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE  164 (369)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEEC-SS-----CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred             EEeCCCeEEEEECCCCcEEEEeec-CC-----CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence            999999999999999998888772 32     899999999999999886 7     999999998632211000     


Q ss_pred             -ccccccccc--ceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305         151 -NLKPWFRKN--IVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEI  226 (334)
Q Consensus       151 -~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i  226 (334)
                       ......|..  .+.+++|+|+++ +|++++.||.|++||+++ .+.+..+..|...|.+++|+|++++|++++ .|+.|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i  242 (369)
T 3zwl_B          165 PIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-RDTNS  242 (369)
T ss_dssp             CSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEE
T ss_pred             eeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-CCceE
Confidence             002334444  899999999999 999999999999999998 688888999999999999999999999999 89999


Q ss_pred             EEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC--------------cEEEEeCCCCCCCCCCCcccccc
Q psy2305         227 ICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG--------------DLSIWNVNTSNLPSSPYEESVQE  292 (334)
Q Consensus       227 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~  292 (334)
                      ++||+++ +..+..+.   ....+..++|+|+++++++++.++              .+++||+.++            +
T Consensus       243 ~v~d~~~-~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------------~  306 (369)
T 3zwl_B          243 FLVDVST-LQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE------------E  306 (369)
T ss_dssp             EEEETTT-CCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC------------C
T ss_pred             EEEECCC-Cceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC------------c
Confidence            9999997 66666665   356788899999999999999888              8999999998            7


Q ss_pred             ccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         293 PLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       293 ~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+..+.+|...|.+++|  +|++    ++|++++.||.|++
T Consensus       307 ~~~~~~~~~~~v~~~~~--s~~~----~~l~s~~~dg~v~i  341 (369)
T 3zwl_B          307 EIGRVQGHFGPLNTVAI--SPQG----TSYASGGEDGFIRL  341 (369)
T ss_dssp             EEEEEECCSSCEEEEEE--CTTS----SEEEEEETTSEEEE
T ss_pred             chhheecccCcEEEEEE--CCCC----CEEEEEcCCCeEEE
Confidence            78889999999999999  9999    99999999999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.5e-42  Score=294.63  Aligned_cols=278  Identities=12%  Similarity=0.099  Sum_probs=227.9

Q ss_pred             CceeEEEEcCCC-cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEecccceecC-CCc
Q psy2305           2 DIEEDVDEAPDG-TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSIDG-FTS   78 (334)
Q Consensus         2 d~V~~~~~sp~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~-~~~   78 (334)
                      +.|.+++|+|++ ++|++|+.||.|+|||+.+++..              ..+. ..|...|.+++|       +| +++
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~~~~~h~~~v~~~~~-------~~~~~~  132 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT--------------SFIQGMGPGDAITGMKF-------NQFNTN  132 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE--------------EEECCCSTTCBEEEEEE-------ETTEEE
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc--------------eeeecCCcCCceeEEEe-------CCCCCC
Confidence            579999999999 89999999999999999987765              2333 247788999888       56 678


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +|++++.|+.|++||+.+ .....+..+.  .....|.+++|+|++++|++++ |+.|++||++  ++...    .+..|
T Consensus       133 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~----~~~~h  203 (383)
T 3ei3_B          133 QLFVSSIRGATTLRDFSG-SVIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIF----KEKLH  203 (383)
T ss_dssp             EEEEEETTTEEEEEETTS-CEEEEEECCC--CSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEE----EEECS
T ss_pred             EEEEEeCCCEEEEEECCC-CceEEEeccC--CCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEE----EeccC
Confidence            999999999999999986 4444554422  1112799999999999999988 9999999995  55555    57789


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCC----CCceEeeccCCCCeEEEEEcc-CCcEEEeeecCCCeEEEEEcc
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSD----GRPLFFLKGHNGGITHLEFSS-NGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      ...|.+++|+|+++.++++++.|+.|++||+++    +..+..+ +|...|.+++|+| ++++|++++ .|+.|++||++
T Consensus       204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~~  281 (383)
T 3ei3_B          204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD-QRNEIRVYSSY  281 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE-SSSEEEEEETT
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc-CCCcEEEEECC
Confidence            999999999999987899999999999999987    5566666 6999999999999 999999999 89999999999


Q ss_pred             CCCccceeeccccc---------------CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee
Q psy2305         233 NPGCILHTFPRQVS---------------TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF  297 (334)
Q Consensus       233 ~~~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  297 (334)
                      + +.....+..+..               ......++|+|++++  +++.|+.|++||+.++            +.+..+
T Consensus       282 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~------------~~~~~l  346 (383)
T 3ei3_B          282 D-WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG------------GLVHQL  346 (383)
T ss_dssp             B-TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC------------CEEEEE
T ss_pred             C-CccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC------------ceeeee
Confidence            7 555455543321               134455778888887  8889999999999998            677777


Q ss_pred             cc--cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         298 SA--HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       298 ~~--~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+  |...+..++|  +|++    ++|++++ |+.|++
T Consensus       347 ~~~~~~~~~~~~~~--s~~g----~~l~s~s-d~~i~i  377 (383)
T 3ei3_B          347 RDPNAAGIISLNKF--SPTG----DVLASGM-GFNILI  377 (383)
T ss_dssp             CBTTBCSCCCEEEE--CTTS----SEEEEEE-TTEEEE
T ss_pred             cCCCCCceEEEEEE--ecCc----cEEEEec-CCcEEE
Confidence            76  4567777899  9999    9999997 898875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6.9e-42  Score=286.39  Aligned_cols=277  Identities=13%  Similarity=0.125  Sum_probs=232.1

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +.|.+++|+|++++|++++ ||.|++|++.++....           ....+. ..+...|.+++|       +|++++|
T Consensus        52 ~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~-------~~~~~~l  112 (337)
T 1gxr_A           52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS-----------PVSQLDCLNRDNYIRSCKL-------LPDGCTL  112 (337)
T ss_dssp             SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS-----------CSEEEECSCTTSBEEEEEE-------CTTSSEE
T ss_pred             CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee-----------eeecccccCCCCcEEEEEE-------cCCCCEE
Confidence            4689999999999999998 9999999998765431           001111 146678888888       6799999


Q ss_pred             EEeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      ++++.|+.|++||+.+++  ....+..+..     .|.+++|+|++++|++++ |+.|++||+++ ++...    .+..|
T Consensus       113 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~----~~~~~  182 (337)
T 1gxr_A          113 IVGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVR----QFQGH  182 (337)
T ss_dssp             EEEESSSEEEEEECCCC--EEEEEEECSSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEE----EECCC
T ss_pred             EEEcCCCcEEEEECCCCCcceeeecccCCC-----ceEEEEECCCCCEEEEEeCCCcEEEEeCCC-Cceee----eeecc
Confidence            999999999999998877  4444554433     799999999999999887 99999999986 44444    46779


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI  237 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~  237 (334)
                      ...+.+++|+|+++ +|++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++ .++.|++||++. .. 
T Consensus       183 ~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~-~~-  257 (337)
T 1gxr_A          183 TDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNK-PD-  257 (337)
T ss_dssp             SSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTS-SC-
T ss_pred             cCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCC-CC-
Confidence            99999999999999 99999999999999999998887775 778899999999999999999 899999999987 43 


Q ss_pred             ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccc
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~  317 (334)
                      ...+..+  ...+.+++|+|++++|++++.||.|++||+.++            +.+ ....|...|.+++|  +|++  
T Consensus       258 ~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~------------~~~-~~~~~~~~v~~~~~--s~~~--  318 (337)
T 1gxr_A          258 KYQLHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG------------ASI-FQSKESSSVLSCDI--SVDD--  318 (337)
T ss_dssp             EEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------------CEE-EEEECSSCEEEEEE--CTTS--
T ss_pred             eEEEcCC--ccceeEEEECCCCCEEEEecCCCcEEEEECCCC------------eEE-EEecCCCcEEEEEE--CCCC--
Confidence            3344444  667899999999999999999999999999987            444 33457788999999  9999  


Q ss_pred             ceeeEEeeecceeeee
Q psy2305         318 LLVADATCSGQITNVK  333 (334)
Q Consensus       318 ~~~~l~t~~~d~~i~~  333 (334)
                        ++|++++.||.+++
T Consensus       319 --~~l~~~~~dg~i~i  332 (337)
T 1gxr_A          319 --KYIVTGSGDKKATV  332 (337)
T ss_dssp             --CEEEEEETTSCEEE
T ss_pred             --CEEEEecCCCeEEE
Confidence              99999999999875

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4e-42  Score=314.76  Aligned_cols=284  Identities=17%  Similarity=0.229  Sum_probs=231.7

Q ss_pred             CceeEEEEcCCC-cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDG-TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +.|++++|+|++ ++|++|+.|++|++|++.+.....         ......+. .|...|.+++|       +|++++|
T Consensus       383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~---------~~~~~~~~-~h~~~v~~v~~-------s~~g~~l  445 (694)
T 3dm0_A          383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY---------GVAQRRLT-GHSHFVEDVVL-------SSDGQFA  445 (694)
T ss_dssp             SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS---------CEEEEEEE-CCSSCEEEEEE-------CTTSSEE
T ss_pred             ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc---------ccccceec-CCCCcEEEEEE-------CCCCCEE
Confidence            679999999975 799999999999999998654210         00112333 46678988887       6799999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++|+.|+.|++||+.+++....+..|..     .|.+++|+|++++|++++ |++|++||+..  ...........+|..
T Consensus       446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~--~~~~~~~~~~~~h~~  518 (694)
T 3dm0_A          446 LSGSWDGELRLWDLAAGVSTRRFVGHTK-----DVLSVAFSLDNRQIVSASRDRTIKLWNTLG--ECKYTISEGGEGHRD  518 (694)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEECSSTTSCSS
T ss_pred             EEEeCCCcEEEEECCCCcceeEEeCCCC-----CEEEEEEeCCCCEEEEEeCCCEEEEEECCC--CcceeeccCCCCCCC
Confidence            9999999999999999999888887655     899999999999999998 99999999874  322221113457889


Q ss_pred             ceEEEEEcCCCC-cEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         160 IVSAIAINPVHP-DICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       160 ~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      .|.+++|+|++. ..+++++.|+.|++||+++++....+.+|.+.|.+++|+|++++|++++ .|+.|++||+++ ++.+
T Consensus       519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~i~iwd~~~-~~~~  596 (694)
T 3dm0_A          519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWDLAE-GKKL  596 (694)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSBCEEEETTT-TEEE
T ss_pred             cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCC-CceE
Confidence            999999999872 2899999999999999999999999999999999999999999999999 899999999997 6655


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc-------------------
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA-------------------  299 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------------------  299 (334)
                      ..+..   ...+.+++|+|++.+|++++ ++.|++||++++.            .+..+..                   
T Consensus       597 ~~~~~---~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (694)
T 3dm0_A          597 YSLEA---NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKS------------IVEDLKVDLKAEAEKADNSGPAATKR  660 (694)
T ss_dssp             ECCBC---SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTE------------EEEEECCCCC----------------
T ss_pred             EEecC---CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC------------ChhhhccccccccccccccccccCCc
Confidence            55543   45688899999998888765 5669999999873            3322221                   


Q ss_pred             cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         300 HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       300 ~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +...+++++|  +|++    ++|++|+.||+|++
T Consensus       661 ~~~~~~~l~~--spdg----~~l~sgs~Dg~i~i  688 (694)
T 3dm0_A          661 KVIYCTSLNW--SADG----STLFSGYTDGVIRV  688 (694)
T ss_dssp             CCCCEEEEEE--CTTS----SEEEEEETTSEEEE
T ss_pred             eeEEeeeEEE--cCCC----CEEEEEcCCCeEEE
Confidence            1123688999  9999    99999999999975

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-42  Score=298.55  Aligned_cols=239  Identities=18%  Similarity=0.272  Sum_probs=213.4

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++|+|+|++|++|+.|++|++||+.+.+..              ..+. .|...|.+++|       +|++++|+
T Consensus       151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~--------------~~~~-~h~~~V~~v~~-------~p~~~~l~  208 (410)
T 1vyh_C          151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI--------------RTMH-GHDHNVSSVSI-------MPNGDHIV  208 (410)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE--------------ECCC-CCSSCEEEEEE-------CSSSSEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--------------EEEc-CCCCCEEEEEE-------eCCCCEEE
Confidence            57999999999999999999999999999887765              2343 35678988888       66999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.|+.|++||+.++..+..+..|..     .|.++.|+|++++|++++ |+.|++||+.+ +....    .+.+|...
T Consensus       209 s~s~D~~i~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~----~~~~h~~~  278 (410)
T 1vyh_C          209 SASRDKTIKMWEVQTGYCVKTFTGHRE-----WVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKA----ELREHRHV  278 (410)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEE----EECCCSSC
T ss_pred             EEeCCCeEEEEECCCCcEEEEEeCCCc-----cEEEEEECCCCCEEEEEcCCCeEEEEECCC-Cceee----EecCCCce
Confidence            999999999999999999988887654     899999999999999988 99999999986 44444    57789999


Q ss_pred             eEEEEEcCC--------------------CCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeee
Q psy2305         161 VSAIAINPV--------------------HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       161 v~~~~~~~~--------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  220 (334)
                      |.+++|+|+                    +. +|++|+.|+.|++||+++++++..+.+|...|.+++|+|+|++|++++
T Consensus       279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s  357 (410)
T 1vyh_C          279 VECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA  357 (410)
T ss_dssp             EEEEEECCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred             EEEEEEcCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe
Confidence            999999996                    55 899999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305         221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN  277 (334)
Q Consensus       221 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  277 (334)
                       .|+.|++||+++ ++.+..+..|  ...+.+++|+|++.+|++|+.||.|++|+++
T Consensus       358 -~D~~i~vwd~~~-~~~~~~~~~h--~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          358 -DDKTLRVWDYKN-KRCMKTLNAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             -TTTEEEEECCTT-SCCCEEEECC--SSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             -CCCeEEEEECCC-CceEEEEcCC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence             899999999987 7777888776  6679999999999999999999999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.4e-41  Score=285.14  Aligned_cols=291  Identities=17%  Similarity=0.213  Sum_probs=232.0

Q ss_pred             CceeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      ++|++|+|+|+ +++||||+.|++|+|||+.+.+...         ......+. .|...|.+++|       +|++++|
T Consensus        39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~---------~~~~~~l~-~h~~~V~~~~~-------s~dg~~l  101 (340)
T 4aow_A           39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY---------GIPQRALR-GHSHFVSDVVI-------SSDGQFA  101 (340)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS---------EEEEEEEC-CCSSCEEEEEE-------CTTSSEE
T ss_pred             CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc---------ceeeEEEe-CCCCCEEEEEE-------CCCCCEE
Confidence            57999999997 6899999999999999998765321         00112333 35678988888       6799999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++++.|+.|++|+............+..     .+..+.+++++++|++++ |+.+++||+.. ......   ...+|..
T Consensus       102 ~s~~~d~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~-~~~~~~---~~~~~~~  172 (340)
T 4aow_A          102 LSGSWDGTLRLWDLTTGTTTRRFVGHTK-----DVLSVAFSSDNRQIVSGSRDKTIKLWNTLG-VCKYTV---QDESHSE  172 (340)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEE---CSSSCSS
T ss_pred             EEEcccccceEEeecccceeeeecCCCC-----ceeEEEEeecCccceeecCCCeEEEEEeCC-CceEEE---EeccccC
Confidence            9999999999999998888777665544     788999999999999987 99999999985 222222   5678899


Q ss_pred             ceEEEEEcCCCC-cEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         160 IVSAIAINPVHP-DICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       160 ~v~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      .+..++|++++. .++++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++++|++++ .|+.|++||++. ...+
T Consensus       173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~~-~~~~  250 (340)
T 4aow_A          173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLNE-GKHL  250 (340)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCEEEEEETTT-TEEE
T ss_pred             cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEecc-Ccee
Confidence            999999998764 2678899999999999999999999999999999999999999999999 899999999997 6666


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL  318 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~  318 (334)
                      ..+..   ...+.++.|+|++.++ +++.|+.|++||++++......   ..........+|...|++++|  +|++   
T Consensus       251 ~~~~~---~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~--s~dg---  318 (340)
T 4aow_A          251 YTLDG---GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDEL---KQEVISTSSKAEPPQCTSLAW--SADG---  318 (340)
T ss_dssp             EEEEC---SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEE---CCC-------CCCCCEEEEEE--CTTS---
T ss_pred             eeecC---CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEec---cccceeeeccCCCCCEEEEEE--CCCC---
Confidence            66654   3567889999987655 5567999999999876221000   000112234568889999999  9999   


Q ss_pred             eeeEEeeecceeeee
Q psy2305         319 LVADATCSGQITNVK  333 (334)
Q Consensus       319 ~~~l~t~~~d~~i~~  333 (334)
                       ++|++|+.||.|++
T Consensus       319 -~~l~sgs~Dg~v~i  332 (340)
T 4aow_A          319 -QTLFAGYTDNLVRV  332 (340)
T ss_dssp             -SEEEEEETTSCEEE
T ss_pred             -CEEEEEeCCCEEEE
Confidence             99999999999975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3e-42  Score=284.73  Aligned_cols=243  Identities=15%  Similarity=0.180  Sum_probs=211.4

Q ss_pred             eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305          51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG  130 (334)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (334)
                      ..+.+ |.+.|.+++|       +|++++|++++.||.|++||+.+++.+..+..+..     +|.+++|+|++++|++|
T Consensus         7 ~~~~~-h~~~V~~~~f-------sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~   73 (304)
T 2ynn_A            7 KTFSN-RSDRVKGIDF-------HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET-----PVRAGKFIARKNWIIVG   73 (304)
T ss_dssp             EEEEE-ECSCEEEEEE-------CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-----CEEEEEEEGGGTEEEEE
T ss_pred             EeecC-CCCceEEEEE-------CCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCC-----cEEEEEEeCCCCEEEEE
Confidence            45554 5678998888       77999999999999999999999999888887655     89999999999999999


Q ss_pred             e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEE
Q psy2305         131 F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLE  208 (334)
Q Consensus       131 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~  208 (334)
                      + |+.|++||+.+ ++.+.    .+.+|...|.+++|+|+++ +|++|+.|++|++||++++ .....+.+|...|.+++
T Consensus        74 s~d~~i~vwd~~~-~~~~~----~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~  147 (304)
T 2ynn_A           74 SDDFRIRVFNYNT-GEKVV----DFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA  147 (304)
T ss_dssp             ETTSEEEEEETTT-CCEEE----EEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred             CCCCEEEEEECCC-CcEEE----EEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE
Confidence            8 99999999997 55555    5788999999999999999 9999999999999999887 45567889999999999


Q ss_pred             Ecc-CCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecC--CCceEEeeecCCcEEEEeCCCCCCCCCC
Q psy2305         209 FSS-NGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTS--CSNYLLSGNTNGDLSIWNVNTSNLPSSP  285 (334)
Q Consensus       209 ~~~-~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~  285 (334)
                      |+| ++.+|++++ .|++|++||++. ......+..+ +...+..+.|+|  ++.+|++++.|+.|++||++++      
T Consensus       148 ~~p~~~~~l~sgs-~D~~v~iwd~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~------  218 (304)
T 2ynn_A          148 FNPKDPSTFASGC-LDRTVKVWSLGQ-STPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK------  218 (304)
T ss_dssp             ECTTCTTEEEEEE-TTSEEEEEETTC-SSCSEEEECC-CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT------
T ss_pred             ECCCCCCEEEEEe-CCCeEEEEECCC-CCccceeccC-CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC------
Confidence            999 678999999 899999999987 4444444332 234566677765  7889999999999999999997      


Q ss_pred             CccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         286 YEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                            +.+..+.+|...|..++|  +|++    ++|++++.||+|++
T Consensus       219 ------~~~~~~~~h~~~v~~~~~--~p~~----~~l~s~s~Dg~i~i  254 (304)
T 2ynn_A          219 ------SCVATLEGHMSNVSFAVF--HPTL----PIIISGSEDGTLKI  254 (304)
T ss_dssp             ------EEEEEEECCSSCEEEEEE--CSSS----SEEEEEETTSCEEE
T ss_pred             ------ccceeeCCCCCCEEEEEE--CCCC----CEEEEEcCCCeEEE
Confidence                  788899999999999999  9999    99999999999975

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.2e-42  Score=291.18  Aligned_cols=296  Identities=13%  Similarity=0.095  Sum_probs=234.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCC--ceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSEL--HCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      ++|.+++|+|++++|++++.|+.|++|++.+++  ..              ..+. .|...|.+++|       +|++++
T Consensus         9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~--------------~~~~-~h~~~v~~~~~-------~~~~~~   66 (372)
T 1k8k_C            9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV--------------HELK-EHNGQVTGVDW-------APDSNR   66 (372)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE--------------EEEE-CCSSCEEEEEE-------ETTTTE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEee--------------eeec-CCCCcccEEEE-------eCCCCE
Confidence            579999999999999999999999999998875  32              2343 46678988888       669999


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCe--eeeecccccc
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRE--CVSRNLKPWF  156 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~--~~~~~~~~~~  156 (334)
                      |++++.|+.|++||+.+++....+....+..   .|.+++|+|++++|++++ |+.|++||++.....  ...   ....
T Consensus        67 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~---~~~~  140 (372)
T 1k8k_C           67 IVTCGTDRNAYVWTLKGRTWKPTLVILRINR---AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH---IKKP  140 (372)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEECCCCSS---CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE---ECTT
T ss_pred             EEEEcCCCeEEEEECCCCeeeeeEEeecCCC---ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee---eecc
Confidence            9999999999999998887665554333333   899999999999999987 999999999973321  221   3467


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEEC------------------CCCCceEeeccCCCCeEEEEEccCCcEEEe
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSD------------------SDGRPLFFLKGHNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  218 (334)
                      |...|.+++|+|+++ +|++++.||.|++||+                  ..++.+..+.+|...|.+++|+|++++|++
T Consensus       141 ~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  219 (372)
T 1k8k_C          141 IRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW  219 (372)
T ss_dssp             CCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE
T ss_pred             cCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE
Confidence            889999999999999 9999999999999995                  367788888899999999999999999999


Q ss_pred             eecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC--CCCC--CCCCc-------
Q psy2305         219 GARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT--SNLP--SSPYE-------  287 (334)
Q Consensus       219 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~--~~~~~-------  287 (334)
                      ++ .|+.|++||+++ ++.+..+..+  ...+.+++|+|++++|+++ .|+.|++|++..  +...  ...+.       
T Consensus       220 ~~-~d~~i~i~d~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  294 (372)
T 1k8k_C          220 VS-HDSTVCLADADK-KMAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR  294 (372)
T ss_dssp             EE-TTTEEEEEEGGG-TTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------
T ss_pred             Ee-CCCEEEEEECCC-CceeEEEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhh
Confidence            99 899999999998 6777777765  5678899999999999888 899999999987  3100  00000       


Q ss_pred             -----------ccccccc------cee-cccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         288 -----------ESVQEPL------YKF-SAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       288 -----------~~~~~~~------~~~-~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                                 +...+..      ..+ .+|...|++++|  .+....+..+|++++.||.|++
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~g~~~~~l~s~~~Dg~i~~  356 (372)
T 1k8k_C          295 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV--LSGGKAKCSQFCTTGMDGGMSI  356 (372)
T ss_dssp             --CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEE--EESTTTSCSEEEEEETTSEEEE
T ss_pred             hcchhhhhhhcccccccccCccccccccccccCCcceeEE--ecCCCcceeeEEEecCCCceEE
Confidence                       0000111      233 489999999997  6432011158999999999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.1e-42  Score=301.61  Aligned_cols=282  Identities=15%  Similarity=0.144  Sum_probs=218.0

Q ss_pred             CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEecccceecCCCcE
Q psy2305           2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      +.|+||+|+| ++++||+|+.||.|+|||+.+++..              ..+. .+|.+.|.+++|+|.      ++++
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~--------------~~~~~~gH~~~V~~l~f~p~------~~~~  179 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP--------------TFIKGIGAGGSITGLKFNPL------NTNQ  179 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC--------------EEECCCSSSCCCCEEEECSS------CTTE
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce--------------eEEEccCCCCCEEEEEEeCC------CCCE
Confidence            3599999999 5679999999999999999877653              1222 246788999888442      6889


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      |++++.||+|++||++++........+....   .+.+++|+|++++|++|+ ||.|++||++  ++.+.    .+.+|.
T Consensus       180 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~g~~dg~i~~wd~~--~~~~~----~~~~h~  250 (435)
T 4e54_B          180 FYASSMEGTTRLQDFKGNILRVFASSDTINI---WFCSLDVSASSRMVVTGDNVGNVILLNMD--GKELW----NLRMHK  250 (435)
T ss_dssp             EEEECSSSCEEEEETTSCEEEEEECCSSCSC---CCCCEEEETTTTEEEEECSSSBEEEEESS--SCBCC----CSBCCS
T ss_pred             EEEEeCCCEEEEeeccCCceeEEeccCCCCc---cEEEEEECCCCCEEEEEeCCCcEeeeccC--cceeE----EEeccc
Confidence            9999999999999998765544433322222   678999999999999998 9999999997  44444    578899


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe---eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF---LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG  235 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~  235 (334)
                      ..|++++|+|+++.++++++.|+.|++||+++.+....   ..+|...|.+++|+|+|++|++++ .|+.|++||++. +
T Consensus       251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~-~  328 (435)
T 4e54_B          251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQ-W  328 (435)
T ss_dssp             SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSS-S
T ss_pred             ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCC-C
Confidence            99999999999886888999999999999988765443   357999999999999999999999 899999999987 5


Q ss_pred             ccceeeccccc----CCceEEEEecCCCceEEeee------------cCCcEEEEeCCCCCCCCCCCcccccccccee-c
Q psy2305         236 CILHTFPRQVS----TNQRVYFDLTSCSNYLLSGN------------TNGDLSIWNVNTSNLPSSPYEESVQEPLYKF-S  298 (334)
Q Consensus       236 ~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~  298 (334)
                      .....+..+..    ........|+|++.+++++.            .++.|++||..++            +.+..+ .
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g------------~~~~~l~~  396 (435)
T 4e54_B          329 DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG------------KMMCQLYD  396 (435)
T ss_dssp             SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC------------CEEEEECC
T ss_pred             ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC------------cEEEEEeC
Confidence            54444443321    11223344566665555443            3457999999998            555554 4


Q ss_pred             cccccccee-eeccCCCcccceeeEEeeecceeeee
Q psy2305         299 AHQDCTNGV-RWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       299 ~~~~~i~~~-~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +|...|.++ +|  +|++    ++||+|+ |++|++
T Consensus       397 ~~~~~v~s~~~f--spdg----~~lasg~-d~~i~i  425 (435)
T 4e54_B          397 PESSGISSLNEF--NPMG----DTLASAM-GYHILI  425 (435)
T ss_dssp             SSCCCCCCEEEE--CTTS----SCEEEEC-SSEEEE
T ss_pred             CCCCcEEEEEEE--CCCC----CEEEEEc-CCcEEE
Confidence            677788887 69  9999    9999876 667764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-41  Score=294.24  Aligned_cols=301  Identities=11%  Similarity=0.098  Sum_probs=236.5

Q ss_pred             CceeEEEEcCCCc-EEEEeeCCCeEEEEEC----CCCCc------eeeeeCCCCCCCCcceeeeeeeceeEEEEEEeccc
Q psy2305           2 DIEEDVDEAPDGT-CLLTNSNDNHLRTFDL----PSELH------CKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT   70 (334)
Q Consensus         2 d~V~~~~~sp~~~-~l~~~~~d~~v~iw~~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (334)
                      +.|.+++|+|+|+ +||+++.||.|++|++    .+++.      ...+......     .....+|...|.+++|    
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~----  116 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFAL-----SASSGKTTNQVTCLAW----  116 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCC-----C------CBCEEEEEE----
T ss_pred             CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccc-----cccccCCCCceEEEEE----
Confidence            5799999999999 9999999999999999    77762      2111110000     0001125668988888    


Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeee
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVS  149 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~  149 (334)
                         +|++++|++++.||.|++|| .+++....+..+..     .|.+++|+|++++|++++ |+.|++||+.+ ++....
T Consensus       117 ---s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~  186 (425)
T 1r5m_A          117 ---SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRA-----PIVSVKWNKDGTHIISMDVENVTILWNVIS-GTVMQH  186 (425)
T ss_dssp             ---CTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCS-----CEEEEEECTTSSEEEEEETTCCEEEEETTT-TEEEEE
T ss_pred             ---cCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCc-----cEEEEEECCCCCEEEEEecCCeEEEEECCC-CcEEEE
Confidence               67999999999999999999 67778888876554     899999999999999887 99999999975 332221


Q ss_pred             ec----------------------------------------------------ccccccccceEEEEEcCCCCcEEEEe
Q psy2305         150 RN----------------------------------------------------LKPWFRKNIVSAIAINPVHPDICALG  177 (334)
Q Consensus       150 ~~----------------------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~  177 (334)
                      ..                                                    ..+..|...|.+++|+|+++ +|+++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  265 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSA  265 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEEE
Confidence            10                                                    02346788999999999999 99999


Q ss_pred             ecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecC
Q psy2305         178 TYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTS  257 (334)
Q Consensus       178 ~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~  257 (334)
                      +.|+.|++||+++++.+..+.+|...|.+++|+|++ +|++++ .|+.|++||+++ +..+..+..+  ...+.+++|+|
T Consensus       266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~i~d~~~-~~~~~~~~~~--~~~i~~~~~s~  340 (425)
T 1r5m_A          266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDGSVRLWSLKQ-NTLLALSIVD--GVPIFAGRISQ  340 (425)
T ss_dssp             ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTSEEEEEETTT-TEEEEEEECT--TCCEEEEEECT
T ss_pred             cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCCcEEEEECCC-CcEeEecccC--CccEEEEEEcC
Confidence            999999999999999999999999999999999999 999999 899999999987 6667777655  56788999999


Q ss_pred             CCceEEeeecCCcEEEEeCCCCCCCCCCC--------ccccccccceeccccc--ccceeeeccCCCcccceeeEEeeec
Q psy2305         258 CSNYLLSGNTNGDLSIWNVNTSNLPSSPY--------EESVQEPLYKFSAHQD--CTNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       258 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~--~i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                      ++++|++++.||.|++||+.++.......        .....+.+..+..|..  .|.+++|  +|++    ++|++++.
T Consensus       341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~----~~l~~~~~  414 (425)
T 1r5m_A          341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW--NCAG----NKISVAYS  414 (425)
T ss_dssp             TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE--CTTS----SEEEEEES
T ss_pred             CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc--cCCC----ceEEEEec
Confidence            99999999999999999998763100000        0000126778888866  9999999  9999    99999999


Q ss_pred             ceeeee
Q psy2305         328 QITNVK  333 (334)
Q Consensus       328 d~~i~~  333 (334)
                      ||.+++
T Consensus       415 dg~i~i  420 (425)
T 1r5m_A          415 LQEGSV  420 (425)
T ss_dssp             SSCCEE
T ss_pred             CceEEE
Confidence            998875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2e-41  Score=303.98  Aligned_cols=271  Identities=20%  Similarity=0.290  Sum_probs=235.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|.+++|+|++++|++++.|+.|++|+..... .              ..+. .|...|.+++|       +|++++|+
T Consensus       263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~-~--------------~~~~-~h~~~v~~~~~-------~~~~~~l~  319 (577)
T 2ymu_A          263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL-L--------------QTLT-GHSSSVWGVAF-------SPDGQTIA  319 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-E--------------EEEC-CCSSCEEEEEE-------CTTSSEEE
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcE-E--------------EEEe-cCCCCeEEEEE-------CCCCCEEE
Confidence            468999999999999999999999999975433 2              2333 35678888777       67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.|+.|++||... +.+..+..+..     .+.+++|+|++++|++++ |+.+++||..  ++...    .+.+|...
T Consensus       320 t~~~d~~i~~w~~~~-~~~~~~~~~~~-----~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~~~~----~~~~~~~~  387 (577)
T 2ymu_A          320 SASDDKTVKLWNRNG-QHLQTLTGHSS-----SVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQ----TLTGHSSS  387 (577)
T ss_dssp             EEETTSCEEEEETTS-CEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETT--CCEEE----EEECCSSC
T ss_pred             EEeCCCeEEEEeCCC-CeeEEEeCCCC-----CEEEEEECCCCCEEEEEeCCCEEEEEcCC--CCEEE----EecCCCCC
Confidence            999999999999754 45556665544     899999999999999987 9999999965  55555    57789999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      |++++|+|+++ +|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++ .|+.|++||..  ++.+..
T Consensus       388 v~~~~~s~dg~-~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~--~~~~~~  462 (577)
T 2ymu_A          388 VRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRN--GQLLQT  462 (577)
T ss_dssp             EEEEEECTTSS-CEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETT--SCEEEE
T ss_pred             eEEEEECCCCC-EEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECC--CCEEEE
Confidence            99999999999 9999999999999995 6788889999999999999999999999999 89999999975  566677


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV  320 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~  320 (334)
                      +..|  ...+.+++|+|++++|++++.|+.|++||...             +.+..+.+|...|++++|  +|++    +
T Consensus       463 ~~~~--~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-------------~~~~~~~~h~~~v~~l~~--s~dg----~  521 (577)
T 2ymu_A          463 LTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSSSVRGVAF--SPDG----Q  521 (577)
T ss_dssp             EECC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTS-------------CEEEEEECCSSCEEEEEE--CTTS----S
T ss_pred             EcCC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-------------CEEEEEeCCCCCEEEEEE--cCCC----C
Confidence            7766  66788999999999999999999999999643             678889999999999999  9999    9


Q ss_pred             eEEeeecceeeee
Q psy2305         321 ADATCSGQITNVK  333 (334)
Q Consensus       321 ~l~t~~~d~~i~~  333 (334)
                      +||+++.||.|++
T Consensus       522 ~l~s~~~dg~v~l  534 (577)
T 2ymu_A          522 TIASASDDKTVKL  534 (577)
T ss_dssp             CEEEEETTSEEEE
T ss_pred             EEEEEECcCEEEE
Confidence            9999999999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-42  Score=299.01  Aligned_cols=286  Identities=15%  Similarity=0.165  Sum_probs=237.7

Q ss_pred             CceeEEEEcCCCc-EEEEe----------eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEeccc
Q psy2305           2 DIEEDVDEAPDGT-CLLTN----------SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT   70 (334)
Q Consensus         2 d~V~~~~~sp~~~-~l~~~----------~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (334)
                      +.|.+++|+|+|+ +|+++          +.|+.|+||++.++....             ......+...|.+++|    
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~-------------~~~~~~~~~~v~~~~~----   75 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK-------------PIASLQVDSKFNDLDW----   75 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS-------------CSCCCCCSSCEEEEEE----
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc-------------EEEEEecCCceEEEEE----
Confidence            3688999999987 99999          889999999998775320             1112235678988888    


Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCCC----CeeeEEEcCccccccccceeEEEEcCC-CCEEEEee-CCcEEEEEcCCCC
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSVG----GEIKATYRPYNQVDEVTHAYSLAFSLD-GNKIYAGF-LSEVKIFSTDRPG  144 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~~  144 (334)
                         +|++++|++++.|+.|++||+.+    .+....+..|..     .|.+++|+|+ +++|++++ |+.|++||+....
T Consensus        76 ---s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           76 ---SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS-----SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCT  147 (416)
T ss_dssp             ---CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS-----CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred             ---CCCCCeEEEEccCCeEEEeecccccccccchhhccCCcc-----ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence               67999999999999999999987    346666766544     8999999998 88999887 9999999998733


Q ss_pred             C-----eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC------CCCeEEEEEccCC
Q psy2305         145 R-----ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH------NGGITHLEFSSNG  213 (334)
Q Consensus       145 ~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~  213 (334)
                      .     ..... .....|...|.+++|+|++..+|++++.|+.|++||+++++.+..+..+      ...|.+++|+|++
T Consensus       148 ~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  226 (416)
T 2pm9_A          148 ESPSNYTPLTP-GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN  226 (416)
T ss_dssp             SCTTTCCCBCC-CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred             ccccccccccc-ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC
Confidence            1     11110 0346788999999999994339999999999999999999988888766      7899999999997


Q ss_pred             -cEEEeeecCCC---eEEEEEccCCCccceeec-ccccCCceEEEEecC-CCceEEeeecCCcEEEEeCCCCCCCCCCCc
Q psy2305         214 -ILLFSGARKDC---EIICWDLRNPGCILHTFP-RQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTSNLPSSPYE  287 (334)
Q Consensus       214 -~~l~~~~~~d~---~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  287 (334)
                       .+|++++ .|+   .|++||++....+...+. .|  ...+.+++|+| ++++|++++.||.|++||+.++        
T Consensus       227 ~~~l~~~~-~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~--------  295 (416)
T 2pm9_A          227 STRVATAT-GSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA--------  295 (416)
T ss_dssp             TTEEEEEE-CCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--------
T ss_pred             CCEEEEEE-CCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--------
Confidence             6889998 898   999999997445666665 55  66789999999 9999999999999999999997        


Q ss_pred             cccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         288 ESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       288 ~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                          +.+..+.+|...|.+++|  +|+++   .+|++++.|+.|++
T Consensus       296 ----~~~~~~~~~~~~v~~~~~--s~~~~---~~l~s~~~d~~i~i  332 (416)
T 2pm9_A          296 ----EQLSQFPARGNWCFKTKF--APEAP---DLFACASFDNKIEV  332 (416)
T ss_dssp             ----CEEEEEECSSSCCCCEEE--CTTCT---TEEEECCSSSEEEE
T ss_pred             ----ccceeecCCCCceEEEEE--CCCCC---CEEEEEecCCcEEE
Confidence                778889999999999999  99973   58999999999875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.7e-42  Score=288.15  Aligned_cols=295  Identities=13%  Similarity=0.092  Sum_probs=231.7

Q ss_pred             CceeEEEEcCCCcEE-EEeeC---CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           2 DIEEDVDEAPDGTCL-LTNSN---DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         2 d~V~~~~~sp~~~~l-~~~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      +.|.+++|+|++..+ ++++.   |+.|++|++.+++..              ......|...|.+++|+|.    ++++
T Consensus        19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~----~~~~   80 (357)
T 3i2n_A           19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--------------LLREIEKAKPIKCGTFGAT----SLQQ   80 (357)
T ss_dssp             SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE--------------EEEEEEESSCEEEEECTTC----CTTT
T ss_pred             CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc--------------ceeeecccCcEEEEEEcCC----CCCC
Confidence            479999999999655 55655   899999999988765              3444467789999888442    1227


Q ss_pred             cEEEEeeCCCcEEEEeCCCCe-eeEEEcCccccccccceeEEE------EcCCCCEEEEee-CCcEEEEEcCCCCCeeee
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGE-IKATYRPYNQVDEVTHAYSLA------FSLDGNKIYAGF-LSEVKIFSTDRPGRECVS  149 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~  149 (334)
                      ++|++++.||.|++||+.+++ .+..+..+..     .|.+++      |+|++++|++++ |+.|++||+.........
T Consensus        81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  155 (357)
T 3i2n_A           81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKE-----IINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN  155 (357)
T ss_dssp             CCEEEEETTSCEEEECTTSCSSCSEEECCCSS-----CEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred             ceEEEecCCCeEEEEeCCCCCccEEEEEeccc-----ceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence            999999999999999999887 7777876554     889995      578999999988 999999999974334442


Q ss_pred             eccccccc----ccceEEEE----EcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEcc---CCcEEEe
Q psy2305         150 RNLKPWFR----KNIVSAIA----INPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSS---NGILLFS  218 (334)
Q Consensus       150 ~~~~~~~~----~~~v~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~  218 (334)
                          +..|    ...+.+++    |+|+++ ++++++.||.|++||+++++.... ..|...|.+++|+|   ++.+|++
T Consensus       156 ----~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~  229 (357)
T 3i2n_A          156 ----MEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVA  229 (357)
T ss_dssp             ----ECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEE
T ss_pred             ----ccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEE
Confidence                3333    34888988    788999 999999999999999998877544 56889999999999   9999999


Q ss_pred             eecCCCeEEEEEccCCCccceeec---ccccCCceEEEEecCCCc-eEEeeecCCcEEEEeCCCCCCCCCCCcc------
Q psy2305         219 GARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNTSNLPSSPYEE------  288 (334)
Q Consensus       219 ~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~------  288 (334)
                      ++ .|+.|++||++. +.....+.   ...+...+.+++|+|+++ +|++++.||.|++||+..+......+.+      
T Consensus       230 ~~-~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~  307 (357)
T 3i2n_A          230 TS-LEGKFHVFDMRT-QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV  307 (357)
T ss_dssp             EE-STTEEEEEEEEE-EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCC
T ss_pred             EC-CCCeEEEEeCcC-CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccc
Confidence            99 899999999987 55544443   112367889999999998 8999999999999999876433111110      


Q ss_pred             -ccccccceecccccccceeeeccCCCcccceeeEE-eeecceeeee
Q psy2305         289 -SVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADA-TCSGQITNVK  333 (334)
Q Consensus       289 -~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~-t~~~d~~i~~  333 (334)
                       ...+.+..+.+|...|.+++|  +|++    ++|+ +++.||.+++
T Consensus       308 ~~~~~~~~~~~~~~~~v~~~~~--s~~~----~~l~~s~~~d~~i~i  348 (357)
T 3i2n_A          308 AGSVSLLQNVTLSTQPISSLDW--SPDK----RGLCVCSSFDQTVRV  348 (357)
T ss_dssp             CCEEEEEEEEECCSSCEEEEEE--CSSS----TTEEEEEETTSEEEE
T ss_pred             ccccceeeccccCCCCeeEEEE--cCCC----CeEEEEecCCCcEEE
Confidence             122456778889999999999  9999    8888 8999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.9e-41  Score=279.03  Aligned_cols=249  Identities=15%  Similarity=0.183  Sum_probs=200.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|+|+|++||+|+.|++|+||++......            +...+. .|...|.+++|+|     ..++++|+
T Consensus        10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~------------~~~~l~-gH~~~V~~v~~s~-----~~~g~~l~   71 (297)
T 2pm7_B           10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK------------LIDTLT-GHEGPVWRVDWAH-----PKFGTILA   71 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC------------CCEEEC-CCSSCEEEEEECC-----GGGCSEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE------------EEEEEc-cccCCeEEEEecC-----CCcCCEEE
Confidence            57999999999999999999999999999754221            113444 4668899999843     12488999


Q ss_pred             EeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          82 CSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +++.|++|++||+.+++  .+..+..|..     .|.+++|+|+  +.+|++++ |+.|++||++........   .+.+
T Consensus        72 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~---~~~~  143 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI---IIDA  143 (297)
T ss_dssp             EEETTTEEEEEEBSSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE---EEEC
T ss_pred             EEcCCCEEEEEEcCCCceEEEEEeecCCC-----ceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee---eeec
Confidence            99999999999998774  4455555444     8999999998  88999887 999999999863222111   4678


Q ss_pred             cccceEEEEEcCC-------------CCcEEEEeecCCeEEEEECCCCC----ceEeeccCCCCeEEEEEccCC---cEE
Q psy2305         157 RKNIVSAIAINPV-------------HPDICALGTYSKIIGLFSDSDGR----PLFFLKGHNGGITHLEFSSNG---ILL  216 (334)
Q Consensus       157 ~~~~v~~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~---~~l  216 (334)
                      |...|.+++|+|+             ++ +|++|+.|+.|++||+++++    ....+.+|...|.+++|+|++   ++|
T Consensus       144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~l  222 (297)
T 2pm7_B          144 HAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYM  222 (297)
T ss_dssp             CSSCEEEEEECCCC------------CC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             ccCccceEeecCCcccccccCCCCCCcc-eEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEE
Confidence            9999999999997             45 89999999999999998776    566788999999999999985   899


Q ss_pred             EeeecCCCeEEEEEccCCCcc--ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         217 FSGARKDCEIICWDLRNPGCI--LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       217 ~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      ++++ .|++|++||++.....  ...+..+.+...+.+++|+|+|++|++++.|+.|++|+...
T Consensus       223 as~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          223 ASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            9999 8999999999863211  12222223466788999999999999999999999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-42  Score=305.64  Aligned_cols=301  Identities=11%  Similarity=0.088  Sum_probs=220.4

Q ss_pred             ceeEEEEcCCC---------cEEEE-------------------eeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee
Q psy2305           3 IEEDVDEAPDG---------TCLLT-------------------NSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK   54 (334)
Q Consensus         3 ~V~~~~~sp~~---------~~l~~-------------------~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~   54 (334)
                      +|++|+|+|++         ++||+                   ++.|++|+||++.+++...           ......
T Consensus       135 ~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~-----------~~~~~l  203 (524)
T 2j04_B          135 LVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHC-----------VKVQTI  203 (524)
T ss_dssp             --CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCE-----------EEEEEE
T ss_pred             ceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCc-----------eEEEEE
Confidence            56777777765         56655                   5578899999998765420           000112


Q ss_pred             eeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeee-----------EEEcCccccccccceeEEEEcCC
Q psy2305          55 IKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK-----------ATYRPYNQVDEVTHAYSLAFSLD  123 (334)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~  123 (334)
                      .++.+.|.+++|+|.. ..++++.+||+++.||+|++||+.++...           ..+..+..     .|++++|+++
T Consensus       204 ~~~~~~V~~v~wsp~~-~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~-----~v~sv~~s~~  277 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGC-HAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS-----LITTFDFLSP  277 (524)
T ss_dssp             EECCCSEEEEEECSSC-CCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT-----CEEEEEESSS
T ss_pred             EecCCcEEEEEECCCC-CCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC-----CEEEEEecCC
Confidence            3456789999997731 22355789999999999999999866421           23444332     8999999987


Q ss_pred             CCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEE--EEcCCC-CcEEEEeecCCeEEEEECCCCCceEeecc
Q psy2305         124 GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAI--AINPVH-PDICALGTYSKIIGLFSDSDGRPLFFLKG  199 (334)
Q Consensus       124 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  199 (334)
                      + .|++|+ ||+|++||+++......    .+.+|...|+++  .|+|++ . +|++++.|++|++||++++++...+.+
T Consensus       278 ~-~lasgs~DgtV~lWD~~~~~~~~~----~~~~H~~~V~sv~~~~s~~g~~-~laS~S~D~tvklWD~~~~~~~~~~~~  351 (524)
T 2j04_B          278 T-TVVCGFKNGFVAEFDLTDPEVPSF----YDQVHDSYILSVSTAYSDFEDT-VVSTVAVDGYFYIFNPKDIATTKTTVS  351 (524)
T ss_dssp             S-EEEEEETTSEEEEEETTBCSSCSE----EEECSSSCEEEEEEECCTTSCC-EEEEEETTSEEEEECGGGHHHHCEEEE
T ss_pred             C-eEEEEeCCCEEEEEECCCCCCceE----EeecccccEEEEEEEcCCCCCe-EEEEeccCCeEEEEECCCCCccccccc
Confidence            5 788887 99999999986323222    467899999999  578887 6 999999999999999999888777777


Q ss_pred             CCC--CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305         200 HNG--GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN  277 (334)
Q Consensus       200 ~~~--~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  277 (334)
                      |..  .|.+++|+|+++.|++++ .|++|++||++. +..+..+.+|  ...+.+++|+|+|++|++|+.||+|++||+.
T Consensus       352 ~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~-~~~~~~l~gH--~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          352 RFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRA-AFAVHPLVSR--ETTITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             ECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTC-TTCCEEEEEC--SSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             ccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcc-cccceeeecC--CCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            653  578999999999999999 899999999998 6666677765  6789999999999999999999999999975


Q ss_pred             CCCCC------------------CCCCcc--------------ccccccceecccccccceeeeccCCCcccceeeEEee
Q psy2305         278 TSNLP------------------SSPYEE--------------SVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       278 ~~~~~------------------~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~  325 (334)
                      .....                  ++|+..              .....+..+.+|...|.+++|  +|+++ ....||+|
T Consensus       428 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vaf--sp~~~-~~~~lAsg  504 (524)
T 2j04_B          428 RRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKW--NETSA-GGKCYAFS  504 (524)
T ss_dssp             SSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEE--CCSTT-TTTEEEEE
T ss_pred             HhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEEC--CCCCC-ccHHHHhh
Confidence            43111                  233321              012345567789999999999  99960 00489999


Q ss_pred             ecceeeee
Q psy2305         326 SGQITNVK  333 (334)
Q Consensus       326 ~~d~~i~~  333 (334)
                      +.||.|++
T Consensus       505 ~~~g~vrl  512 (524)
T 2j04_B          505 NSAGLLTL  512 (524)
T ss_dssp             CTTSEEEE
T ss_pred             ccCceEEE
Confidence            99999986

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-41  Score=296.29  Aligned_cols=306  Identities=14%  Similarity=0.148  Sum_probs=223.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeec------------eeEEEEEEecc
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEG------------GIIYDYVWYPK   69 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~   69 (334)
                      ++|.+++|+|+|++||+|+.||.|+||++.+++...   ........+...+.+ |.            ..|.+++|   
T Consensus        29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~---~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~---  101 (447)
T 3dw8_B           29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ---SHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRW---  101 (447)
T ss_dssp             GSEEEEEECSSSSEEEEEETTSEEEEEEECC--------CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEE---
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC---cccccceeEeccccc-ccccccccccccccCceEEEEE---
Confidence            579999999999999999999999999998776210   000000001134443 43            66888888   


Q ss_pred             cceecCCC--cEEEEeeCCCcEEEEeCCCCeeeE---------------------------------------EE-cCcc
Q psy2305          70 TSSIDGFT--SYFLCSSMYAPIHLWDSVGGEIKA---------------------------------------TY-RPYN  107 (334)
Q Consensus        70 ~~~~s~~~--~~l~~~~~d~~i~iwd~~~~~~~~---------------------------------------~~-~~~~  107 (334)
                          +|++  .+|++++.|+.|++||+.+++...                                       .+ ..  
T Consensus       102 ----~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  175 (447)
T 3dw8_B          102 ----LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA--  175 (447)
T ss_dssp             ----CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC--
T ss_pred             ----cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC--
Confidence                5576  789999999999999987644321                                       11 22  


Q ss_pred             ccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeee---cccccccccceEEEEEcCCC-CcEEEEeecCCeE
Q psy2305         108 QVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSR---NLKPWFRKNIVSAIAINPVH-PDICALGTYSKII  183 (334)
Q Consensus       108 ~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i  183 (334)
                      |.   ..|.+++|+|++++|+++.|+.|++||++..+......   +..+.+|...|.+++|+|++ . +|++|+.||.|
T Consensus       176 h~---~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~s~~~dg~i  251 (447)
T 3dw8_B          176 HT---YHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN-TFVYSSSKGTI  251 (447)
T ss_dssp             CS---SCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT-EEEEEETTSCE
T ss_pred             CC---cceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc-EEEEEeCCCeE
Confidence            22   28999999999999998889999999998523333211   11356899999999999998 6 99999999999


Q ss_pred             EEEECCCCCc----eEeeccCCC------------CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccC
Q psy2305         184 GLFSDSDGRP----LFFLKGHNG------------GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST  247 (334)
Q Consensus       184 ~i~d~~~~~~----~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  247 (334)
                      ++||+++++.    +..+..|..            .|.+++|+|+|++|++++ . +.|++||++..+.++..+..|...
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~~~~~~~~~~~  329 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRPVETYQVHEYL  329 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSCSCCEESCGGG
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCccccceeeccccc
Confidence            9999999886    788888876            899999999999999999 7 999999998756777777766321


Q ss_pred             Cc-------------eEEEEecCCCceEEeeecCCcEEEEeCCCCCCCC-----CCCcc---cc------------cccc
Q psy2305         248 NQ-------------RVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPS-----SPYEE---SV------------QEPL  294 (334)
Q Consensus       248 ~~-------------~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~---~~------------~~~~  294 (334)
                      ..             +..++|+|++++|++++.||.|++||+.+++...     .|...   ..            ....
T Consensus       330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (447)
T 3dw8_B          330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEIS  409 (447)
T ss_dssp             TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEE
T ss_pred             cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccc
Confidence            11             2348899999999999999999999999874320     00000   00            0000


Q ss_pred             ceecccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         295 YKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       295 ~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      .....+...|..++|  +|++    .+||+++.++.+.
T Consensus       410 ~~~~~~~~~i~~~~~--~p~~----~~la~~~~~~~~~  441 (447)
T 3dw8_B          410 VDSLDFNKKILHTAW--HPKE----NIIAVATTNNLYI  441 (447)
T ss_dssp             GGGCCTTSCCCEEEE--CSSS----SEEEEECSSCEEE
T ss_pred             ccccccCCceeEEEE--CCCC----CEEEEEecceeee
Confidence            001123457899999  9999    9999999987543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.8e-42  Score=298.87  Aligned_cols=276  Identities=16%  Similarity=0.122  Sum_probs=225.3

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .+++++|+|+|++|++++.|+.|++||+.+.+..              ..+..+   .+..+.      .+++++++|++
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~--------------~~~~~~---~~~~~~------~~~~~~~~l~~  114 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS--------------KMLKRA---DYTAVD------TAKLQMRRFIL  114 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT--------------TTSCSC---CEEEEE------EECSSSCEEEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEeccccee--------------eEEecC---CceEEE------EEecCCCEEEE
Confidence            4568999999999999999999999999877653              122221   233332      23779999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      ++.|+.|++||+.+++....+..|..     .|++++|+|++++|++++ |+.|++||+.+ ++...    .+.+|...|
T Consensus       115 ~~~dg~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~----~~~~h~~~v  184 (420)
T 3vl1_A          115 GTTEGDIKVLDSNFNLQREIDQAHVS-----EITKLKFFPSGEALISSSQDMQLKIWSVKD-GSNPR----TLIGHRATV  184 (420)
T ss_dssp             EETTSCEEEECTTSCEEEEETTSSSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTT-CCCCE----EEECCSSCE
T ss_pred             EECCCCEEEEeCCCcceeeecccccC-----ccEEEEECCCCCEEEEEeCCCeEEEEeCCC-CcCce----EEcCCCCcE
Confidence            99999999999999888877766554     899999999999999988 99999999987 44444    467899999


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc---CCCCeEE---------------------EEEccCCcEEE
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG---HNGGITH---------------------LEFSSNGILLF  217 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~---------------------~~~~~~~~~l~  217 (334)
                      .+++|+|+++ +|++++.|+.|++||+++++.+..+..   +...+.+                     ++|+|++++|+
T Consensus       185 ~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (420)
T 3vl1_A          185 TDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI  263 (420)
T ss_dssp             EEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE
T ss_pred             EEEEEcCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE
Confidence            9999999999 999999999999999999998888864   3344444                     45578999999


Q ss_pred             eeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCc-eEEeeecCCcEEEEeCCCCCCCCCCCccccccccce
Q psy2305         218 SGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK  296 (334)
Q Consensus       218 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  296 (334)
                      +++ .||.|++||+++ +.....+.. .+...+.+++|+|+++ +|++++.||.|++||+++++           .++..
T Consensus       264 ~~~-~dg~i~i~d~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-----------~~~~~  329 (420)
T 3vl1_A          264 AGH-VSGVITVHNVFS-KEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE-----------CPVGE  329 (420)
T ss_dssp             EEE-TTSCEEEEETTT-CCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----------SCSEE
T ss_pred             EEc-CCCeEEEEECCC-CceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-----------Cchhh
Confidence            999 899999999997 554554433 2356789999999998 99999999999999999873           34666


Q ss_pred             ecc-cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         297 FSA-HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       297 ~~~-~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +.. |...|..+.|   |++    ++|++++.|+.+++
T Consensus       330 ~~~~~~~~v~~~~~---~~~----~~l~s~~~d~~v~i  360 (420)
T 3vl1_A          330 FLINEGTPINNVYF---AAG----ALFVSSGFDTSIKL  360 (420)
T ss_dssp             EEESTTSCEEEEEE---ETT----EEEEEETTTEEEEE
T ss_pred             hhccCCCCceEEEe---CCC----CEEEEecCCccEEE
Confidence            666 5557777754   578    89999999999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-42  Score=299.33  Aligned_cols=297  Identities=15%  Similarity=0.131  Sum_probs=224.1

Q ss_pred             CceeEEEEcC-CCcEEEEeeCCCeEEEEECCC---CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPS---ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      ++|++++|+| ++++||+|+.||+|+|||+.+   +...             ...+...|...|.+++|       +|++
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~-------~~~~  123 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY-------------SSSLTYDCSSTVTQITM-------IPNF  123 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC-------------SCSEEEECSSCEEEEEE-------CTTS
T ss_pred             CceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc-------------ceeeeccCCCCEEEEEE-------eCCC
Confidence            5799999999 999999999999999999876   3311             11333357789999888       6699


Q ss_pred             cEEEEeeCCCcEEEEeCC---CCeeeEEEcCcc-----ccc--cccceeEEE--EcCCCCEEEEee-CCcEEEEEcCCCC
Q psy2305          78 SYFLCSSMYAPIHLWDSV---GGEIKATYRPYN-----QVD--EVTHAYSLA--FSLDGNKIYAGF-LSEVKIFSTDRPG  144 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~-----~~~--~~~~v~~~~--~~~~~~~l~~~~-d~~i~i~d~~~~~  144 (334)
                      ++|++++.||.|++||+.   +++....+..+.     ...  ....+.++.  +++++.+|++++ |+.|++||+++ +
T Consensus       124 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~  202 (437)
T 3gre_A          124 DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT-L  202 (437)
T ss_dssp             SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT-C
T ss_pred             CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-C
Confidence            999999999999999984   444443332210     000  112566666  668899999988 99999999987 5


Q ss_pred             Ceeeeecccccc--cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEc----cCCcEEE
Q psy2305         145 RECVSRNLKPWF--RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFS----SNGILLF  217 (334)
Q Consensus       145 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~----~~~~~l~  217 (334)
                      +...    .+..  |...|++++|+|+++ +|++|+.||.|++||+++++++..+. .|...|.+++|+    |++++|+
T Consensus       203 ~~~~----~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~  277 (437)
T 3gre_A          203 ERLQ----IIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV  277 (437)
T ss_dssp             CEEE----EEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred             eeeE----EEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence            5554    3444  889999999999999 99999999999999999999988875 788899999665    5688999


Q ss_pred             eeecCCCeEEEEEccCCCccceeecccc------------------------cCCceEEEEecCCCceEEeeecCCcEEE
Q psy2305         218 SGARKDCEIICWDLRNPGCILHTFPRQV------------------------STNQRVYFDLTSCSNYLLSGNTNGDLSI  273 (334)
Q Consensus       218 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------------------~~~~~~~~~~s~~~~~l~~~~~dg~i~i  273 (334)
                      +++ .|+.|++||+++ ++.+..+..+.                        +...+.+++|+ ++++|++++.|+.|++
T Consensus       278 s~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~  354 (437)
T 3gre_A          278 GGS-SKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVM  354 (437)
T ss_dssp             EES-TTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEE
T ss_pred             EEc-CCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEE
Confidence            999 899999999987 55555555331                        34457788898 7799999999999999


Q ss_pred             EeCCCCCCCCCCCc-------------------------cccccccceecccccccceeeeccCCC--cccceeeEEeee
Q psy2305         274 WNVNTSNLPSSPYE-------------------------ESVQEPLYKFSAHQDCTNGVRWKHHKF--ERDLLVADATCS  326 (334)
Q Consensus       274 wd~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~i~~~~~~~s~~--~~~~~~~l~t~~  326 (334)
                      ||+.+++.......                         ............|.+.|++++|  +++  +    .+|++|+
T Consensus       355 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~--~~~~~~----~~l~s~~  428 (437)
T 3gre_A          355 FSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSIST--CEVDET----PLLVACD  428 (437)
T ss_dssp             EETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEE--EESSSS----EEEEEEE
T ss_pred             EECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEee--eccCCc----eEEEEEc
Confidence            99998743310000                         0000011112238889999999  777  7    8999999


Q ss_pred             cceeeee
Q psy2305         327 GQITNVK  333 (334)
Q Consensus       327 ~d~~i~~  333 (334)
                      .||.|++
T Consensus       429 ~dG~I~i  435 (437)
T 3gre_A          429 NSGLIGI  435 (437)
T ss_dssp             TTSCEEE
T ss_pred             CCceEEE
Confidence            9999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-41  Score=288.26  Aligned_cols=288  Identities=12%  Similarity=0.133  Sum_probs=229.4

Q ss_pred             CceeEEEEcCC----CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeee----eceeEEEEEEeccccee
Q psy2305           2 DIEEDVDEAPD----GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK----EGGIIYDYVWYPKTSSI   73 (334)
Q Consensus         2 d~V~~~~~sp~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~   73 (334)
                      ++|.+++|+|+    ...+++++.++.|++|++.+++..              ..+..+    +...|.+++|+|..   
T Consensus        19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~---   81 (366)
T 3k26_A           19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------------RLLQSYVDADADENFYTCAWTYDS---   81 (366)
T ss_dssp             SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------------EEEEEEECSCTTCCEEEEEEEECT---
T ss_pred             CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------------EeeeeccccCCCCcEEEEEeccCC---
Confidence            57999999984    446666667779999999977654              233322    44679999996521   


Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeec
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~  151 (334)
                      .+++++|++++.||.|++||+.+++.+..+..+..     .|.+++|+| ++++|++++ |+.|++||+++ ++......
T Consensus        82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~  155 (366)
T 3k26_A           82 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGN-----AINELKFHPRDPNLLLSVSKDHALRLWNIQT-DTLVAIFG  155 (366)
T ss_dssp             TTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTT-TEEEEEEC
T ss_pred             CCCCCEEEEecCCCEEEEEEchhceEeeeecCCCC-----cEEEEEECCCCCCEEEEEeCCCeEEEEEeec-CeEEEEec
Confidence            11278999999999999999999999888886554     899999999 899999988 99999999986 44444211


Q ss_pred             ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc----------------------------CCCC
Q psy2305         152 LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG----------------------------HNGG  203 (334)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------~~~~  203 (334)
                       ....|...|.+++|+|+++ +|++++.||.|++||+++++....+..                            |...
T Consensus       156 -~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (366)
T 3k26_A          156 -GVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY  233 (366)
T ss_dssp             -STTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred             -ccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence             1268999999999999999 999999999999999988765544443                            8999


Q ss_pred             eEEEEEccCCcEEEeeecCCCeEEEEEccCCCc-------------cceeecccccCCceEEEEecCC--CceEEeeecC
Q psy2305         204 ITHLEFSSNGILLFSGARKDCEIICWDLRNPGC-------------ILHTFPRQVSTNQRVYFDLTSC--SNYLLSGNTN  268 (334)
Q Consensus       204 i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~s~~--~~~l~~~~~d  268 (334)
                      |.+++|+  +++|++++ .|+.|++||++....             .+..+..+  ...+.+++|+|+  +++|++++.|
T Consensus       234 v~~~~~~--~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~d  308 (366)
T 3k26_A          234 VDCVRWL--GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQV  308 (366)
T ss_dssp             CCEEEEE--TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTT
T ss_pred             EEEEEEc--CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecC
Confidence            9999998  77999999 899999999987322             13334433  445667888999  9999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCccccccccceeccc--ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         269 GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH--QDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       269 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |.|++||+.+++..        ......+..|  ...|.+++|  +|++    ++|++++.||.|++
T Consensus       309 g~i~vwd~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~--s~~~----~~l~s~~~dg~i~i  361 (366)
T 3k26_A          309 GKLYVWDLEVEDPH--------KAKCTTLTHHKCGAAIRQTSF--SRDS----SILIAVCDDASIWR  361 (366)
T ss_dssp             SCEEEEECCSSSGG--------GCEEEEECCTTCCSCEEEEEE--CTTS----SEEEEEETTSEEEE
T ss_pred             CcEEEEECCCCCCc--------cccceEEcccccCCceEEEEe--CCCC----CeEEEEeCCCEEEE
Confidence            99999999987321        0133366777  689999999  9999    99999999999875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2e-41  Score=285.88  Aligned_cols=246  Identities=11%  Similarity=0.101  Sum_probs=198.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++|+|++. +++++.||+|+|||+.+++...           ........|...|.+++|       +|++++|+
T Consensus        95 ~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~-----------~~~~~~~~h~~~V~~v~~-------spdg~~l~  155 (357)
T 4g56_B           95 AGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLL-----------VNKFAKYEHDDIVKTLSV-------FSDGTQAV  155 (357)
T ss_dssp             SCEEEEEEETTTE-EEEEETTSCEEEC--------C-----------CCCEEECCCSSCEEEEEE-------CSSSSEEE
T ss_pred             CCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeE-----------EEeeccCCCCCCEEEEEE-------CCCCCEEE
Confidence            4689999999986 4567789999999998876431           111222346788998888       67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +++.|+.|++||+.+++.+..+..|..     .|++++|+|++. ++++++ |+.|++||+++ ++.....  ....+..
T Consensus       156 sgs~dg~v~iwd~~~~~~~~~~~~h~~-----~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~--~~~~~~~  227 (357)
T 4g56_B          156 SGGKDFSVKVWDLSQKAVLKSYNAHSS-----EVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRI--DFCASDT  227 (357)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBC--CCTTCCS
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcCCCC-----CEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeeee--eeccccc
Confidence            999999999999999999999987655     899999999985 667776 99999999987 4433321  3456778


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC-cEEEeeecCCCeEEEEEccCCCccc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      .+.+++|+|++..+|++|+.|+.|++||+++++++..+.+|...|++++|+|++ ++|++++ .|++|+|||+++ ++.+
T Consensus       228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~-~~~~  305 (357)
T 4g56_B          228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADF-SEVF  305 (357)
T ss_dssp             CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTS-CEEE
T ss_pred             cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCC-CcEe
Confidence            899999999876589999999999999999999999999999999999999987 5789999 899999999987 6555


Q ss_pred             eeecccccCCceEEEEecC-CCceEEeeecCCcEEEEeCCCC
Q psy2305         239 HTFPRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ..+ +|  ...+.+++|+| ++++|++++.||+|++|++.+.
T Consensus       306 ~~~-~H--~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          306 RDL-SH--RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEC-CC--SSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEC-CC--CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            443 44  67899999998 7999999999999999999775

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.9e-41  Score=289.24  Aligned_cols=296  Identities=13%  Similarity=0.076  Sum_probs=234.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC---c
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT---S   78 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~---~   78 (334)
                      ++|++++|+|  ++|++++.||.|++|++.+++...        .......+. .|...|.+++|+|..   .+++   +
T Consensus        17 ~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~-~h~~~v~~~~~~~~~---~~~g~~~~   82 (397)
T 1sq9_A           17 ADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN--------PKDKSYSHF-VHKSGLHHVDVLQAI---ERDAFELC   82 (397)
T ss_dssp             SCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC--------GGGGEEEEE-CCTTCEEEEEEEEEE---ETTTEEEE
T ss_pred             cCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc--------CCCcceEEe-cCCCcEEEEEEeccc---ccCCcccc
Confidence            5799999999  799999999999999999877110        000113444 466789998884410   1128   9


Q ss_pred             EEEEeeCCCcEEEEeCCCCee-----eEEEcCccccccccceeEEEEc----CCCCE-EEEee-CCcEEEEEcCC-----
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEI-----KATYRPYNQVDEVTHAYSLAFS----LDGNK-IYAGF-LSEVKIFSTDR-----  142 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~----~~~~~-l~~~~-d~~i~i~d~~~-----  142 (334)
                      +|++++.|+.|++||+.+++.     ...+..+........|.+++|+    |++++ |++++ |+.|++||+..     
T Consensus        83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence            999999999999999988776     7777765211001289999999    99999 99887 99999999985     


Q ss_pred             -CCCeeeeecccc-------cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc---C---CCCeEEEE
Q psy2305         143 -PGRECVSRNLKP-------WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG---H---NGGITHLE  208 (334)
Q Consensus       143 -~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~i~~~~  208 (334)
                       ...........+       ..|...+.+++|+|++  ++++++.||.|++||+++++.+..+..   |   ...|.+++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~  240 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  240 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence             222110000012       4578899999999998  899999999999999999999999998   8   99999999


Q ss_pred             EccCCcEEEeeecCC---CeEEEEEccCCCccceeecccc-----------cCCceEEEEecCCCceEEeeecCCcEEEE
Q psy2305         209 FSSNGILLFSGARKD---CEIICWDLRNPGCILHTFPRQV-----------STNQRVYFDLTSCSNYLLSGNTNGDLSIW  274 (334)
Q Consensus       209 ~~~~~~~l~~~~~~d---~~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~s~~~~~l~~~~~dg~i~iw  274 (334)
                      |+|++++|++++ .|   +.|++||+++ ++.+..+....           +...+.+++|+|++++|++++.||.|++|
T Consensus       241 ~~~~~~~l~~~~-~d~~~g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  318 (397)
T 1sq9_A          241 FSPQGSLLAIAH-DSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW  318 (397)
T ss_dssp             ECSSTTEEEEEE-EETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred             ECCCCCEEEEEe-cCCCCceEEEEECCC-CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            999999999999 79   9999999997 67777776511           36788999999999999999999999999


Q ss_pred             eCCCCCCCCCCCccccccccceec------cc---------------ccccceeeeccCCCccccee----------eEE
Q psy2305         275 NVNTSNLPSSPYEESVQEPLYKFS------AH---------------QDCTNGVRWKHHKFERDLLV----------ADA  323 (334)
Q Consensus       275 d~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~i~~~~~~~s~~~~~~~~----------~l~  323 (334)
                      |+.++            +.+..+.      +|               ...|.+++|  +|++    +          +|+
T Consensus       319 d~~~~------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~--~~~g----~~~~~~~~~~~~l~  380 (397)
T 1sq9_A          319 DVKTK------------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF--LKKG----WRSGMGADLNESLC  380 (397)
T ss_dssp             ETTTT------------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE--ECTT----TSBSTTCTTSCEEE
T ss_pred             EcCCC------------ceeEEEecccCcccchhhhhccccccccccCCceeEEEe--cccc----ccccccccccceEE
Confidence            99987            6677777      67               889999999  9986    4          899


Q ss_pred             eeecceeeee
Q psy2305         324 TCSGQITNVK  333 (334)
Q Consensus       324 t~~~d~~i~~  333 (334)
                      +++.||.|++
T Consensus       381 s~~~dg~i~i  390 (397)
T 1sq9_A          381 CVCLDRSIRW  390 (397)
T ss_dssp             EEETTTEEEE
T ss_pred             EecCCCcEEE
Confidence            9999999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-42  Score=295.67  Aligned_cols=292  Identities=14%  Similarity=0.166  Sum_probs=230.6

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCC----CceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC-
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSE----LHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF-   76 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~-   76 (334)
                      +.|.+++|+|++++|++++.||.|++|++.+.    +..              ..+. .|...|.+++|       +|+ 
T Consensus        68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~--------------~~~~-~h~~~v~~~~~-------~~~~  125 (416)
T 2pm9_A           68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSM--------------ARFS-NHSSSVKTVKF-------NAKQ  125 (416)
T ss_dssp             SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEE--------------EECC-CSSSCCCEEEE-------CSSS
T ss_pred             CceEEEEECCCCCeEEEEccCCeEEEeecccccccccch--------------hhcc-CCccceEEEEE-------cCCC
Confidence            46899999999999999999999999999872    222              2333 36678888888       567 


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCe------eeEEEcCccccccccceeEEEEcCC-CCEEEEee-CCcEEEEEcCCCCCeee
Q psy2305          77 TSYFLCSSMYAPIHLWDSVGGE------IKATYRPYNQVDEVTHAYSLAFSLD-GNKIYAGF-LSEVKIFSTDRPGRECV  148 (334)
Q Consensus        77 ~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~~~~~~  148 (334)
                      +++|++++.|+.|++||+.+++      ....+..  ...+...|.+++|+|+ +.+|++++ |+.|++||++. ++...
T Consensus       126 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~  202 (416)
T 2pm9_A          126 DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ--SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA-KKEVI  202 (416)
T ss_dssp             TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC--SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT-TEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcccccccccccccc--ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC-CCcce
Confidence            8899999999999999998876      3222211  1111228999999999 68888887 99999999986 44444


Q ss_pred             eeccccccc------ccceEEEEEcCCCCcEEEEeecCC---eEEEEECCCC-CceEeec-cCCCCeEEEEEcc-CCcEE
Q psy2305         149 SRNLKPWFR------KNIVSAIAINPVHPDICALGTYSK---IIGLFSDSDG-RPLFFLK-GHNGGITHLEFSS-NGILL  216 (334)
Q Consensus       149 ~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~i~~~~~~~-~~~~l  216 (334)
                      .    +..+      ...+.+++|+|++..++++++.|+   .|++||++++ +++..+. +|...|.+++|+| ++++|
T Consensus       203 ~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l  278 (416)
T 2pm9_A          203 H----LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL  278 (416)
T ss_dssp             E----ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred             E----EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence            2    3333      789999999999855899999998   9999999986 6777788 8999999999999 99999


Q ss_pred             EeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCC-ceEEeeecCCcEEEEeCCCCCCCCCCCc-----c--
Q psy2305         217 FSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS-NYLLSGNTNGDLSIWNVNTSNLPSSPYE-----E--  288 (334)
Q Consensus       217 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~--  288 (334)
                      ++++ .|+.|++||+++ ++.+..+..|  ...+.+++|+|++ .+|++++.|+.|++||+...........     .  
T Consensus       279 ~s~~-~dg~v~~wd~~~-~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  354 (416)
T 2pm9_A          279 LSSG-RDNTVLLWNPES-AEQLSQFPAR--GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQES  354 (416)
T ss_dssp             EEEE-SSSEEEEECSSS-CCEEEEEECS--SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------
T ss_pred             EEEe-CCCCEEEeeCCC-CccceeecCC--CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCC
Confidence            9999 899999999998 7777777766  5677889999999 8999999999999999988754321100     0  


Q ss_pred             -----------------ccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         289 -----------------SVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       289 -----------------~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                                       ..... .....|...+..++|  +|+|    ++|++++.|++|++
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--s~dg----~~la~~~~d~~v~~  409 (416)
T 2pm9_A          355 ETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHW--AFGG----KLVQITPDGKGVSI  409 (416)
T ss_dssp             ------------CCSCCCSSCC-CCCSTTCCCSCCCEE--ETTT----EEECBCTTSSCBCC
T ss_pred             cccccccccccccccccccccc-cCCccccCCccceEE--eeCC----eEEEEeCCCCeEEE
Confidence                             00001 112226678889999  9999    99999999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-42  Score=295.12  Aligned_cols=292  Identities=12%  Similarity=0.035  Sum_probs=215.4

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCC--CceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSE--LHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      ++|++++|+|+|++||+++.|+.|++|++.++  +..              ..+. .|...|.+++|       +|++++
T Consensus        12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~--------------~~~~-~h~~~v~~~~~-------s~~~~~   69 (377)
T 3dwl_C           12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHA--------------RTFS-DHDKIVTCVDW-------APKSNR   69 (377)
T ss_dssp             SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEEC--------------CCBC-CCSSCEEEEEE-------CTTTCC
T ss_pred             CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEE--------------EEEe-cCCceEEEEEE-------eCCCCE
Confidence            46999999999999999999999999999877  332              2333 36678999888       669999


Q ss_pred             EEEeeCCCcEEEEeCCCCe---eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCC--eeeeeccc
Q psy2305          80 FLCSSMYAPIHLWDSVGGE---IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGR--ECVSRNLK  153 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~--~~~~~~~~  153 (334)
                      |++++.|+.|++||+.+++   ....+..+..     .|.+++|+|++++|++++ |+.|++||++....  ...    .
T Consensus        70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~  140 (377)
T 3dwl_C           70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR-----AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK----H  140 (377)
T ss_dssp             EEEEETTSSEEEC------CCCCEEECCCCSS-----CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCE----E
T ss_pred             EEEEeCCCeEEEEEcCCCCceeeeeEecccCC-----ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeee----E
Confidence            9999999999999998877   4455554443     899999999999999887 99999999986321  122    3


Q ss_pred             ccc-cccceEEEEEcCCCCcEEEEeecCCeEEEEECCC------------------CCceEeeccCCCCeEEEEEccCCc
Q psy2305         154 PWF-RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD------------------GRPLFFLKGHNGGITHLEFSSNGI  214 (334)
Q Consensus       154 ~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~  214 (334)
                      +.. |...|.+++|+|+++ +|++++.|+.|++||++.                  ++++..+ +|...|.+++|+|+++
T Consensus       141 ~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~  218 (377)
T 3dwl_C          141 LKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN  218 (377)
T ss_dssp             ECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS
T ss_pred             eecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC
Confidence            455 999999999999999 999999999999999852                  4455666 8999999999999999


Q ss_pred             EEEeeecCCCeEEEEEccCCCcc----ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCC-C----C
Q psy2305         215 LLFSGARKDCEIICWDLRNPGCI----LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPS-S----P  285 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~----~  285 (334)
                      +|++++ .|+.|++||+++ +..    +..+..|  ...+.+++|+|++++|++++.++.+ +|+........ .    +
T Consensus       219 ~l~~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~  293 (377)
T 3dwl_C          219 ALAYAG-HDSSVTIAYPSA-PEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG  293 (377)
T ss_dssp             CEEEEE-TTTEEC-CEECS-TTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred             EEEEEe-CCCcEEEEECCC-CCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence            999999 899999999998 544    5566655  6678899999999999999866655 77665322110 0    0


Q ss_pred             Ccccc-------------c----------------------cccceecccccccceeeeccCCCcccceeeEEeeeccee
Q psy2305         286 YEESV-------------Q----------------------EPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQIT  330 (334)
Q Consensus       286 ~~~~~-------------~----------------------~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~  330 (334)
                      .....             .                      ........|.+.|+++++  .+....+...|+|||.||.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~--~~~~~~~~~~~~s~g~Dg~  371 (377)
T 3dwl_C          294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRP--YAGTPGNITAFTSSGTDGR  371 (377)
T ss_dssp             CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEE--EEEETTEEEEEEEEETTSE
T ss_pred             ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEec--cCCCCCceEEEEeecCCCc
Confidence            00000             0                      001112238899999997  6544111126999999999


Q ss_pred             eee
Q psy2305         331 NVK  333 (334)
Q Consensus       331 i~~  333 (334)
                      |++
T Consensus       372 i~i  374 (377)
T 3dwl_C          372 VVL  374 (377)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.4e-40  Score=277.70  Aligned_cols=240  Identities=20%  Similarity=0.224  Sum_probs=205.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|.+++|+|+|++|++|+.|+.|++|++.+.....          .....+. .|...|.++.|       ++++. ++
T Consensus        98 ~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~----------~~~~~~~-~h~~~v~~~~~-------~~~~~-l~  158 (340)
T 1got_B           98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV----------RVSRELA-GHTGYLSCCRF-------LDDNQ-IV  158 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC----------EEEEEEE-CCSSCEEEEEE-------EETTE-EE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc----------eeEEEec-CCCccEEEEEE-------CCCCc-EE
Confidence            358899999999999999999999999998764210          0112233 46678888887       44654 88


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.|+.|++||+.+++.+..+..|..     .|.+++|+|++++|++|+ |+.|++||+++ +....    .+.+|...
T Consensus       159 s~s~d~~i~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~----~~~~h~~~  228 (340)
T 1got_B          159 TSSGDTTCALWDIETGQQTTTFTGHTG-----DVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQ----TFTGHESD  228 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEE----EECCCSSC
T ss_pred             EEECCCcEEEEECCCCcEEEEEcCCCC-----ceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEE----EEcCCcCC
Confidence            999999999999999999988887655     899999999999999988 99999999986 55544    57889999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc--CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG--HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      |.+++|+|+++ +|++|+.||.|++||+++++.+..+..  +...|.+++|+|+|++|++++ .|+.|++||+.. +..+
T Consensus       229 v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d~~i~vwd~~~-~~~~  305 (340)
T 1got_B          229 INAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALK-ADRA  305 (340)
T ss_dssp             EEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSEEEEEETTT-CCEE
T ss_pred             EEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC-CCCeEEEEEccc-CcEe
Confidence            99999999999 999999999999999999887776642  335799999999999999999 899999999987 6677


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN  275 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  275 (334)
                      ..+.+|  ...+.+++|+|+|.+|++|+.|+.|++||
T Consensus       306 ~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          306 GVLAGH--DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eEeecC--CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            777776  66899999999999999999999999997

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.6e-41  Score=286.77  Aligned_cols=275  Identities=13%  Similarity=0.120  Sum_probs=232.2

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      +.+++|++  ..+++++.|+.|++|++.+++..              ..+...+...|.+++|       +|++++|+++
T Consensus        96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~--------------~~~~~~~~~~v~~v~~-------s~~~~~l~~~  152 (401)
T 4aez_A           96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVS--------------ALAETDESTYVASVKW-------SHDGSFLSVG  152 (401)
T ss_dssp             CBCEEECT--TSEEEEEETTEEEEEETTTCCEE--------------EEEECCTTCCEEEEEE-------CTTSSEEEEE
T ss_pred             EEEEeecC--CCEEEEECCCeEEEeeCCCCcEe--------------EeeecCCCCCEEEEEE-------CCCCCEEEEE
Confidence            34566765  45788889999999999998875              3555557788999888       6699999999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      +.||.|++||+.+++.+..+..+..     .|.+++|+  +++|++++ |+.|++||++.......    .+.+|...|.
T Consensus       153 ~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~v~  221 (401)
T 4aez_A          153 LGNGLVDIYDVESQTKLRTMAGHQA-----RVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIG----TLQGHSSEVC  221 (401)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEE----EEECCSSCEE
T ss_pred             CCCCeEEEEECcCCeEEEEecCCCC-----ceEEEEEC--CCEEEEEcCCCCEEEEecccCcceee----EEcCCCCCee
Confidence            9999999999999999988886554     89999994  56888887 99999999986444444    5778999999


Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeee--cCCCeEEEEEccCCCcccee
Q psy2305         163 AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA--RKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~d~~i~iwd~~~~~~~~~~  240 (334)
                      +++|+|+++ +|++++.|+.|++||+++++.+..+..|...|.+++|+|++..+++.+  ..|+.|++||+++ +..+..
T Consensus       222 ~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~  299 (401)
T 4aez_A          222 GLAWRSDGL-QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNT  299 (401)
T ss_dssp             EEEECTTSS-EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEE
T ss_pred             EEEEcCCCC-EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEE
Confidence            999999999 999999999999999999999999999999999999999876555532  1599999999997 666666


Q ss_pred             ecccccCCceEEEEecCCCceEEe--eecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLS--GNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL  318 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~  318 (334)
                      +.   ....+.+++|+|+++++++  |+.||.|++||+.++..          .....+.+|...|.+++|  +|++   
T Consensus       300 ~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~----------~~~~~~~~h~~~v~~~~~--s~dg---  361 (401)
T 4aez_A          300 VD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL----------TKQVDIPAHDTRVLYSAL--SPDG---  361 (401)
T ss_dssp             EE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE----------EEEEEEECCSSCCCEEEE--CTTS---
T ss_pred             Ee---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc----------eeEEEecCCCCCEEEEEE--CCCC---
Confidence            65   2557899999999999998  55899999999988632          344457789999999999  9999   


Q ss_pred             eeeEEeeecceeeee
Q psy2305         319 LVADATCSGQITNVK  333 (334)
Q Consensus       319 ~~~l~t~~~d~~i~~  333 (334)
                       ++|++++.||.+++
T Consensus       362 -~~l~s~~~dg~i~i  375 (401)
T 4aez_A          362 -RILSTAASDENLKF  375 (401)
T ss_dssp             -SEEEEECTTSEEEE
T ss_pred             -CEEEEEeCCCcEEE
Confidence             99999999999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.4e-41  Score=280.12  Aligned_cols=278  Identities=16%  Similarity=0.214  Sum_probs=230.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|.+++|+|||++++++..++.+.+|........               .....|...|.+++|       +|++++|+
T Consensus        10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~h~~~v~~~~~-------~~~~~~l~   67 (337)
T 1gxr_A           10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ---------------INTLNHGEVVCAVTI-------SNPTRHVY   67 (337)
T ss_dssp             EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE---------------EEEECCSSCCCEEEE-------CSSSSEEE
T ss_pred             CceeEEEECCCCCEEEeecCCCcEeccccCCcccc---------------ceeccCCCceEEEEE-------ecCCcEEE
Confidence            36889999999999999887776666644433221               223357788888887       67999999


Q ss_pred             EeeCCCcEEEEeCCCCee---eEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEI---KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +++ ||.|++||+.+++.   ...+....+..   .|.+++|+|++++|++++ |+.|++||+.........   .+..|
T Consensus        68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~  140 (337)
T 1gxr_A           68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN---YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA---ELTSS  140 (337)
T ss_dssp             EEC-BSEEEEEETTSTTCCSCSEEEECSCTTS---BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE---EEECS
T ss_pred             EcC-CCeEEEEECCCCCceeeeecccccCCCC---cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee---ecccC
Confidence            998 99999999987653   33333222222   899999999999999887 999999999873322222   46778


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI  237 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~  237 (334)
                      ...+.+++|+|+++ ++++++.||.|++||+++++.+..+..|...+.+++|+|++++|++++ .|+.|++||++. ++.
T Consensus       141 ~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-~~~  217 (337)
T 1gxr_A          141 APACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLRE-GRQ  217 (337)
T ss_dssp             SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTT-TEE
T ss_pred             CCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECCC-Cce
Confidence            89999999999999 999999999999999999999999999999999999999999999999 899999999997 555


Q ss_pred             ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccc
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERD  317 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~  317 (334)
                      +..+.   ....+.+++|+|++++|++++.++.|++||+.++             ....+..|...|.+++|  +|++  
T Consensus       218 ~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~v~~~~~--~~~~--  277 (337)
T 1gxr_A          218 LQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-------------DKYQLHLHESCVLSLKF--AYCG--  277 (337)
T ss_dssp             EEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS-------------CEEEECCCSSCEEEEEE--CTTS--
T ss_pred             Eeeec---CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-------------CeEEEcCCccceeEEEE--CCCC--
Confidence            55543   3567889999999999999999999999999986             23467788999999999  9999  


Q ss_pred             ceeeEEeeecceeeee
Q psy2305         318 LLVADATCSGQITNVK  333 (334)
Q Consensus       318 ~~~~l~t~~~d~~i~~  333 (334)
                        ++|++++.||.+++
T Consensus       278 --~~l~~~~~dg~i~~  291 (337)
T 1gxr_A          278 --KWFVSTGKDNLLNA  291 (337)
T ss_dssp             --SEEEEEETTSEEEE
T ss_pred             --CEEEEecCCCcEEE
Confidence              99999999999875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.6e-41  Score=278.21  Aligned_cols=247  Identities=14%  Similarity=0.213  Sum_probs=200.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|++++|+|+|++||+|+.|++|+|||+.++...            ....+. .|...|.+++|+|     ..++++|+
T Consensus        14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~------------~~~~l~-gH~~~V~~v~~~~-----~~~~~~l~   75 (316)
T 3bg1_A           14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI------------LIADLR-GHEGPVWQVAWAH-----PMYGNILA   75 (316)
T ss_dssp             CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE------------EEEEEE-CCSSCEEEEEECC-----GGGSSCEE
T ss_pred             CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE------------EEEEEc-CCCccEEEEEeCC-----CCCCCEEE
Confidence            57999999999999999999999999999876432            112344 4668899999843     12488999


Q ss_pred             EeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCe-eeeeccccc
Q psy2305          82 CSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRE-CVSRNLKPW  155 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~  155 (334)
                      +++.|++|++||+++++  ....+..|..     .|.+++|+|+  +.+|++++ |+.|++||++..... ...   ...
T Consensus        76 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~---~~~  147 (316)
T 3bg1_A           76 SCSYDRKVIIWREENGTWEKSHEHAGHDS-----SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK---INN  147 (316)
T ss_dssp             EEETTSCEEEECCSSSCCCEEEEECCCSS-----CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC---BTT
T ss_pred             EEECCCEEEEEECCCCcceEEEEccCCCC-----ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee---eec
Confidence            99999999999998874  4455555443     8999999998  78899987 999999999863222 111   467


Q ss_pred             ccccceEEEEEcCC-----------------CCcEEEEeecCCeEEEEECCCC---CceEeeccCCCCeEEEEEccCC--
Q psy2305         156 FRKNIVSAIAINPV-----------------HPDICALGTYSKIIGLFSDSDG---RPLFFLKGHNGGITHLEFSSNG--  213 (334)
Q Consensus       156 ~~~~~v~~~~~~~~-----------------~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~--  213 (334)
                      +|...+.+++|+|+                 ++ +|++|+.|+.|++||++..   +++..+.+|...|.+++|+|++  
T Consensus       148 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~  226 (316)
T 3bg1_A          148 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL  226 (316)
T ss_dssp             SSSSCBCCCEECCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC
T ss_pred             cccCCcceEEEccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC
Confidence            89999999999998                 35 8999999999999999755   4667789999999999999986  


Q ss_pred             --cEEEeeecCCCeEEEEEccCCC---ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         214 --ILLFSGARKDCEIICWDLRNPG---CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       214 --~~l~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                        ++|++++ .|++|++||++...   .....+..+  ...+.+++|+|++++|++++.|+.|++|+...
T Consensus       227 ~~~~las~s-~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          227 PTSTIASCS-QDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             SCCEEEEEE-TTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             CCceEEEEc-CCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence              7899999 89999999997521   112233333  66789999999999999999999999999764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.6e-39  Score=280.49  Aligned_cols=272  Identities=17%  Similarity=0.211  Sum_probs=229.1

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeee-eeceeEEEEEEecccceecCCCcEEEE
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKI-KEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      ++.|+||+++ +||+|. |++|+|||..+++..              ..+.. .|...|++++|       +|+|++|++
T Consensus       108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~--------------~~~~~~~~~~~V~sv~f-------spdg~~las  164 (420)
T 4gga_A          108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL--------------QLLQMEQPGEYISSVAW-------IKEGNYLAV  164 (420)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE--------------EEEECCSTTCCEEEEEE-------CTTSSEEEE
T ss_pred             ceeEEECCCC-EEEEEe-CCEEEEEECCCCCEE--------------EEEEecCCCCcEEEEEE-------CCCCCEEEE
Confidence            5679999864 777775 899999999999875              34443 35678999888       679999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      |+.||.|++||+.+++.+..+..|..     .+.+++++  +..|++|+ |+.+++||.........    .+.+|...+
T Consensus       165 gs~Dg~v~iWd~~~~~~~~~~~~h~~-----~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~----~~~~h~~~~  233 (420)
T 4gga_A          165 GTSSAEVQLWDVQQQKRLRNMTSHSA-----RVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVA----TLSGHSQEV  233 (420)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEE----EEECCSSCE
T ss_pred             EECCCeEEEEEcCCCcEEEEEeCCCC-----ceEEEeeC--CCEEEEEeCCCceeEeeecccceeeE----Eecccccce
Confidence            99999999999999999999887654     67777664  67899888 99999999987444444    578899999


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCC----ceEeeccCCCCeEEEEEccCCc-EEEe--eecCCCeEEEEEccCC
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGR----PLFFLKGHNGGITHLEFSSNGI-LLFS--GARKDCEIICWDLRNP  234 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~~d~~i~iwd~~~~  234 (334)
                      ..+.++|++. ++++++.|+.+++|+..+++    .+.....|...|.+++|+|++. .+++  |+ .|++|++||+++ 
T Consensus       234 ~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs-~D~~I~iwd~~t-  310 (420)
T 4gga_A          234 CGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT-SDRHIRIWNVCS-  310 (420)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT-TTCEEEEEETTT-
T ss_pred             eeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec-CCCEEEEEeCCc-
Confidence            9999999999 99999999999999998764    3556678999999999999765 4443  45 699999999998 


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEeee--cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN--TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHH  312 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s  312 (334)
                      +.....+..   ...+.++.|+|+++.+++++  .|+.|+|||+.++            +++..+.+|.+.|++++|  +
T Consensus       311 ~~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~------------~~v~~l~gH~~~V~~l~~--s  373 (420)
T 4gga_A          311 GACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------------AKVAELKGHTSRVLSLTM--S  373 (420)
T ss_dssp             TEEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC------------CEEEEECCCSSCEEEEEE--C
T ss_pred             cccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC------------cEEEEEcCCCCCEEEEEE--c
Confidence            666666654   45678889999999888765  6899999999998            788999999999999999  9


Q ss_pred             CCcccceeeEEeeecceeeee
Q psy2305         313 KFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       313 ~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |++    ++|||||.|++|++
T Consensus       374 pdg----~~l~S~s~D~tvri  390 (420)
T 4gga_A          374 PDG----ATVASAAADETLRL  390 (420)
T ss_dssp             TTS----SCEEEEETTTEEEE
T ss_pred             CCC----CEEEEEecCCeEEE
Confidence            999    99999999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.2e-41  Score=283.61  Aligned_cols=297  Identities=8%  Similarity=-0.036  Sum_probs=208.6

Q ss_pred             ceeEEEEcCCCcEEEEeeCC-------CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccce--e
Q psy2305           3 IEEDVDEAPDGTCLLTNSND-------NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSS--I   73 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d-------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~   73 (334)
                      ||++++|+|||++|++|+.+       +.|++|++............    ......+. .+...+.++++....+.  .
T Consensus        16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~----~~~~~~l~-~~~~~v~s~~~~~~~~~~g~   90 (365)
T 4h5i_A           16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH----ILSEFALE-DNDDSPTAIDASKGIILVGC   90 (365)
T ss_dssp             CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE----EEEEEECC-TTSCCCCEEEEETTEEEEEC
T ss_pred             CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee----eeeEEEcc-CCCCceEEEEeCCCEEEEEE
Confidence            69999999999999998753       36999998766432000000    00000111 12334545544221111  1


Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCee----eEEEcCccccccccceeEEEEcCCCCEEEEe--e-CCcEEEEEcCCCCCe
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEI----KATYRPYNQVDEVTHAYSLAFSLDGNKIYAG--F-LSEVKIFSTDRPGRE  146 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~-d~~i~i~d~~~~~~~  146 (334)
                      ++++..|++++.|+.+++|++.+...    ...............+.+++|+|||++++++  + |++|++||+.+ +..
T Consensus        91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~-~~~  169 (365)
T 4h5i_A           91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD-LTE  169 (365)
T ss_dssp             CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT-TEE
T ss_pred             CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC-CcE
Confidence            11222333445678899998765432    2222222222222268899999999998743  4 89999999986 444


Q ss_pred             eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305         147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                      ..    . ..|...|.+++|+|+|+ ++++++. +.+.+|+..+++.+.  ....|...|.+++|+|+++++++++ .|+
T Consensus       170 ~~----~-~~~~~~V~~v~fspdg~-~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s-~d~  241 (365)
T 4h5i_A          170 KF----E-IETRGEVKDLHFSTDGK-VVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS-LKK  241 (365)
T ss_dssp             EE----E-EECSSCCCEEEECTTSS-EEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE-ESS
T ss_pred             EE----E-eCCCCceEEEEEccCCc-eEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe-cCC
Confidence            43    2 34778899999999999 9998874 556777777776554  3456888999999999999999998 676


Q ss_pred             ----eEEEEEccCCCcc---ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccce-
Q psy2305         225 ----EIICWDLRNPGCI---LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK-  296 (334)
Q Consensus       225 ----~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-  296 (334)
                          .+++|++......   ...+..  +...+.+++|+|+|++||+|+.|++|+|||++++            +++.. 
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~------------~~~~~~  307 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVTN--RFKGITSMDVDMKGELAVLASNDNSIALVKLKDL------------SMSKIF  307 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEES--SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT------------EEEEEE
T ss_pred             cceeEEeecccccceecceeeeeecC--CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC------------cEEEEe
Confidence                6888998762221   122333  3667899999999999999999999999999998            66766 


Q ss_pred             ecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         297 FSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       297 ~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +.+|...|++++|  +||+    ++||+||.|++|++
T Consensus       308 ~~gH~~~V~~v~f--Spdg----~~laS~S~D~tvrv  338 (365)
T 4h5i_A          308 KQAHSFAITEVTI--SPDS----TYVASVSAANTIHI  338 (365)
T ss_dssp             TTSSSSCEEEEEE--CTTS----CEEEEEETTSEEEE
T ss_pred             cCcccCCEEEEEE--CCCC----CEEEEEeCCCeEEE
Confidence            4789999999999  9999    99999999999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.9e-40  Score=279.89  Aligned_cols=243  Identities=19%  Similarity=0.258  Sum_probs=204.8

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|++++|+|+|++||+|+.|+.|++||+.+++..              ..+. .|...|.+++|       +|++++|++
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~--------------~~~~-~h~~~v~~~~~-------~p~~~~l~s  182 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--------------MILQ-GHEQDIYSLDY-------FPSGDKLVS  182 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--------------EEEC-CCSSCEEEEEE-------CTTSSEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--------------EEEc-cCCCCEEEEEE-------cCCCCEEEE
Confidence            3899999999999999999999999999988765              3444 46678988888       669999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeecc---ccccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRNL---KPWFR  157 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~---~~~~~  157 (334)
                      ++.|++|++||+.+++....+....      .+.+++|+| ++++|++++ |+.|++||+++ +........   ...+|
T Consensus       183 ~s~d~~v~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h  255 (393)
T 1erj_A          183 GSGDRTVRIWDLRTGQCSLTLSIED------GVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGH  255 (393)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSS------CEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCEEEEEC------CCC
T ss_pred             ecCCCcEEEEECCCCeeEEEEEcCC------CcEEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCC
Confidence            9999999999999998877776432      789999999 899999988 99999999986 444432110   12578


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC------------CceEeeccCCCCeEEEEEccCCcEEEeeecCCCe
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG------------RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCE  225 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~  225 (334)
                      ...|.+++|+|+++ +|++|+.|+.|++||+++.            .+...+.+|...|.+++|+|++++|++++ .|+.
T Consensus       256 ~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~  333 (393)
T 1erj_A          256 KDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRG  333 (393)
T ss_dssp             SSCEEEEEECTTSS-EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSE
T ss_pred             CCCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCe
Confidence            99999999999999 9999999999999999753            34566788999999999999999999999 8999


Q ss_pred             EEEEEccCCCccceeecccccCCceEEEEecC------CCceEEeeecCCcEEEEeCCCC
Q psy2305         226 IICWDLRNPGCILHTFPRQVSTNQRVYFDLTS------CSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       226 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      |++||+++ +.++..+.+|  ...+.+++|++      ++++|++|+.||+|++|++...
T Consensus       334 v~iwd~~~-~~~~~~l~~h--~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          334 VLFWDKKS-GNPLLMLQGH--RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEEEETTT-CCEEEEEECC--SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEEEECCC-CeEEEEECCC--CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            99999998 7777788776  56788888775      7899999999999999998653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9.8e-40  Score=304.26  Aligned_cols=277  Identities=15%  Similarity=0.191  Sum_probs=241.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++|+|+|++||+++.||.|+|||+.+++..              ..+. .|...|.+++|       +|++++|+
T Consensus        14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~--------------~~~~-~~~~~v~~~~~-------s~~~~~l~   71 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV--------------RSIQ-VTETPVRAGKF-------IARKNWII   71 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--------------EEEE-CCSSCEEEEEE-------EGGGTEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE--------------EEEe-cCCCcEEEEEE-------eCCCCEEE
Confidence            57999999999999999999999999999988765              3444 46678998888       66999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.||.|++||+.+++.+..+..+..     .|++++|+|++++|++++ |+.|++||+.. +.....   .+.+|...
T Consensus        72 ~~~~dg~i~vw~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-~~~~~~---~~~~~~~~  142 (814)
T 3mkq_A           72 VGSDDFRIRVFNYNTGEKVVDFEAHPD-----YIRSIAVHPTKPYVLSGSDDLTVKLWNWEN-NWALEQ---TFEGHEHF  142 (814)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSEEEEEETTSEEEEEEGGG-TSEEEE---EEECCSSC
T ss_pred             EEeCCCeEEEEECCCCcEEEEEecCCC-----CEEEEEEeCCCCEEEEEcCCCEEEEEECCC-CceEEE---EEcCCCCc
Confidence            999999999999999999888877554     899999999999999888 99999999986 333333   57789999


Q ss_pred             eEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEeeccCC-CCeEEEEEcc--CCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         161 VSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-GGITHLEFSS--NGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       161 v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      |.+++|+| ++. .+++++.||.|++||+++++....+..+. ..+.+++|+|  ++.+|++++ .|+.|++||+++ +.
T Consensus       143 v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-~~  219 (814)
T 3mkq_A          143 VMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQT-KS  219 (814)
T ss_dssp             EEEEEEETTEEE-EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTT-TE
T ss_pred             EEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCC-Cc
Confidence            99999999 777 99999999999999999888877776555 8899999999  999999999 899999999987 67


Q ss_pred             cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~  316 (334)
                      .+..+..|  ...+.+++|+|++++|++++.||.|++||+.++            +.+..+..|...+.+++|  +|++ 
T Consensus       220 ~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~------------~~~~~~~~~~~~v~~~~~--~~~~-  282 (814)
T 3mkq_A          220 CVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY------------KVEKTLNVGLERSWCIAT--HPTG-  282 (814)
T ss_dssp             EEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------------SEEEEECCSSSSEEEEEE--CTTC-
T ss_pred             EEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------cEEEEeecCCCcEEEEEE--ccCC-
Confidence            67777665  567889999999999999999999999999987            677888888899999999  9998 


Q ss_pred             ccee--eEEeeecceeee
Q psy2305         317 DLLV--ADATCSGQITNV  332 (334)
Q Consensus       317 ~~~~--~l~t~~~d~~i~  332 (334)
                         .  ++++++.++.+.
T Consensus       283 ---~~~~~~~~~~~~~~~  297 (814)
T 3mkq_A          283 ---RKNYIASGFDNGFTV  297 (814)
T ss_dssp             ---GGGEEEEEETTEEEE
T ss_pred             ---CceEEEEEeCCCEEE
Confidence               6  467776666543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.4e-39  Score=279.41  Aligned_cols=288  Identities=10%  Similarity=0.087  Sum_probs=226.8

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      +....|+|++++|++++.||.|++||+.+++..              ..+ ..|...|.+++|       +|++++|+++
T Consensus       100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--------------~~~-~~h~~~v~~~~~-------~~~~~~l~s~  157 (420)
T 3vl1_A          100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR--------------EID-QAHVSEITKLKF-------FPSGEALISS  157 (420)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEECTTSCEEE--------------EET-TSSSSCEEEEEE-------CTTSSEEEEE
T ss_pred             eEEEEEecCCCEEEEEECCCCEEEEeCCCccee--------------eec-ccccCccEEEEE-------CCCCCEEEEE
Confidence            445578999999999999999999999877654              222 246788999888       6699999999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc---
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN---  159 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~---  159 (334)
                      +.|+.|++||+.+++.+..+..|..     .|.+++|+|++++|++++ |+.|++||+++ ++...... ....+..   
T Consensus       158 s~d~~i~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~-~~~~~~~~v~  230 (420)
T 3vl1_A          158 SQDMQLKIWSVKDGSNPRTLIGHRA-----TVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFN-RKENPHDGVN  230 (420)
T ss_dssp             ETTSEEEEEETTTCCCCEEEECCSS-----CEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEEC-BTTBTTCCEE
T ss_pred             eCCCeEEEEeCCCCcCceEEcCCCC-----cEEEEEEcCCCCEEEEEcCCCcEEEeECCC-CceeEEee-cCCCCCCCcc
Confidence            9999999999999998888877555     899999999999999987 99999999986 44444321 1122333   


Q ss_pred             ------------------ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEccCCc-EEEee
Q psy2305         160 ------------------IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSSNGI-LLFSG  219 (334)
Q Consensus       160 ------------------~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~l~~~  219 (334)
                                        .+.+++|+|+++ +|++++.||.|++||+++++....+. .|...|.+++|+|+++ +|+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g  309 (420)
T 3vl1_A          231 SIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAG  309 (420)
T ss_dssp             EEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred             EEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence                              444455678898 99999999999999999988777764 5788999999999999 99999


Q ss_pred             ecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc
Q psy2305         220 ARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA  299 (334)
Q Consensus       220 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  299 (334)
                      + .||.|++||+++...++..+..+ +...+..+ +.+++++|++++.|+.|++|++......   ..-........+..
T Consensus       310 ~-~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~---~~~~~~~~~~~~~~  383 (420)
T 3vl1_A          310 Y-ENGMLAQWDLRSPECPVGEFLIN-EGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESE---RPAIEFETPTFLVS  383 (420)
T ss_dssp             E-TTSEEEEEETTCTTSCSEEEEES-TTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCC---SCEECTTSCEEECC
T ss_pred             e-CCCeEEEEEcCCCcCchhhhhcc-CCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCC---ccceeccCccEEcc
Confidence            9 89999999999844556677654 24566666 4568899999999999999999875322   00000122234567


Q ss_pred             cccccceeeeccCCCccccee---eEEeeecceeeee
Q psy2305         300 HQDCTNGVRWKHHKFERDLLV---ADATCSGQITNVK  333 (334)
Q Consensus       300 ~~~~i~~~~~~~s~~~~~~~~---~l~t~~~d~~i~~  333 (334)
                      |.+.|.+++|  +|++    +   .|++++.+|.+.+
T Consensus       384 ~~~~v~~~~~--s~~~----~~~g~l~a~g~~g~~~~  414 (420)
T 3vl1_A          384 NDDAVSQFCY--VSDD----ESNGEVLEVGKNNFCAL  414 (420)
T ss_dssp             SSCCCCEEEE--ECCS----SSSCEEEEEETTTEEEE
T ss_pred             CCcceEEEEE--ccCC----CCcceEEEEcCCceEEE
Confidence            8889999999  9999    8   6777777887764

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-39  Score=268.06  Aligned_cols=267  Identities=15%  Similarity=0.118  Sum_probs=226.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++| |++++|++++.||.|++||+.+++..              ..+. .+...|.+++|       +|++++|+
T Consensus        19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~--------------~~~~-~~~~~v~~~~~-------~~~~~~l~   75 (313)
T 3odt_A           19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG--------------TVVY-TGQGFLNSVCY-------DSEKELLL   75 (313)
T ss_dssp             SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE--------------EEEE-ECSSCEEEEEE-------ETTTTEEE
T ss_pred             CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE--------------EEee-cCCccEEEEEE-------CCCCCEEE
Confidence            57999999 99999999999999999999877654              2333 45688988888       66999999


Q ss_pred             EeeCCCcEEEEeCCCC---eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          82 CSSMYAPIHLWDSVGG---EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +++.|+.|++|++...   +....+..+..     .|.+++|  ++++|++++ |+.|++||.   +....    .+..|
T Consensus        76 ~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~~~~----~~~~~  141 (313)
T 3odt_A           76 FGGKDTMINGVPLFATSGEDPLYTLIGHQG-----NVCSLSF--QDGVVISGSWDKTAKVWKE---GSLVY----NLQAH  141 (313)
T ss_dssp             EEETTSCEEEEETTCCTTSCC-CEECCCSS-----CEEEEEE--ETTEEEEEETTSEEEEEET---TEEEE----EEECC
T ss_pred             EecCCCeEEEEEeeecCCCCcccchhhccc-----CEEEEEe--cCCEEEEEeCCCCEEEEcC---CcEEE----ecccC
Confidence            9999999999998654   44555655444     8999999  567888887 999999992   44444    56789


Q ss_pred             ccceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEeecc-CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305         158 KNIVSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFLKG-HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG  235 (334)
Q Consensus       158 ~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~  235 (334)
                      ...+.++.|.| ++. ++++++.||.|++||  ..+....+.. |...+.+++|+|++. +++++ .|+.|++||+++ +
T Consensus       142 ~~~v~~~~~~~~~~~-~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-~dg~i~i~d~~~-~  215 (313)
T 3odt_A          142 NASVWDAKVVSFSEN-KFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS-NDGLIKLVDMHT-G  215 (313)
T ss_dssp             SSCEEEEEEEETTTT-EEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE-TTSEEEEEETTT-C
T ss_pred             CCceeEEEEccCCCC-EEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc-CCCeEEEEECCc-h
Confidence            99999999998 777 999999999999999  4556667766 899999999999998 88898 899999999998 7


Q ss_pred             ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      +.+..+..|  ...+.+++|+|++ .|++++.||.|++||+.++            +.+..+..|...|.+++|  +|++
T Consensus       216 ~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~------------~~~~~~~~~~~~i~~~~~--~~~~  278 (313)
T 3odt_A          216 DVLRTYEGH--ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG------------SLKQVITLPAISIWSVDC--MSNG  278 (313)
T ss_dssp             CEEEEEECC--SSCEEEEEECTTS-CEEEEETTSEEEEECTTTC------------CEEEEEECSSSCEEEEEE--CTTS
T ss_pred             hhhhhhhcC--CceEEEEEEecCC-CEEEEecCCEEEEEECCCC------------ceeEEEeccCceEEEEEE--ccCC
Confidence            777777765  6678999999999 6889999999999999998            678888889999999999  9999


Q ss_pred             ccceeeEEeeecceeeee
Q psy2305         316 RDLLVADATCSGQITNVK  333 (334)
Q Consensus       316 ~~~~~~l~t~~~d~~i~~  333 (334)
                          + +++++.||.|++
T Consensus       279 ----~-~~~~~~dg~i~i  291 (313)
T 3odt_A          279 ----D-IIVGSSDNLVRI  291 (313)
T ss_dssp             ----C-EEEEETTSCEEE
T ss_pred             ----C-EEEEeCCCcEEE
Confidence                7 667999999875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.2e-39  Score=272.14  Aligned_cols=242  Identities=17%  Similarity=0.240  Sum_probs=205.8

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|.+++|+|+|.+|++++.|+.+++|++......        ........+. .|...|.+++|       +|+++.|++
T Consensus       108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~--------~~~~~~~~~~-~h~~~v~~~~~-------~~~~~~l~t  171 (354)
T 2pbi_B          108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE--------NMAAKKKSVA-MHTNYLSACSF-------TNSDMQILT  171 (354)
T ss_dssp             CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC--------CSGGGCEEEE-ECSSCEEEEEE-------CSSSSEEEE
T ss_pred             CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc--------cccccceeee-ccCCcEEEEEE-------eCCCCEEEE
Confidence            5889999999999999999999999998754321        0011112333 46678888887       668999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC--CCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL--DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++.|++|++||+++++.+..+..|..     .|.+++|+|  ++++|++|+ |+.|++||+++ ++...    .+..|..
T Consensus       172 ~s~D~~v~lwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~----~~~~h~~  241 (354)
T 2pbi_B          172 ASGDGTCALWDVESGQLLQSFHGHGA-----DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQ----AFETHES  241 (354)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEE----EECCCSS
T ss_pred             EeCCCcEEEEeCCCCeEEEEEcCCCC-----CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEE----EecCCCC
Confidence            99999999999999999998887665     899999988  468999888 99999999997 55554    5788999


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC--CCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH--NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI  237 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~  237 (334)
                      .|.+++|+|++. +|++++.|++|++||+++++.+..+..+  ...+.+++|+|++++|++++ .|+.|++||+.+ +..
T Consensus       242 ~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~-~~~  318 (354)
T 2pbi_B          242 DVNSVRYYPSGD-AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLK-GSR  318 (354)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-CSE
T ss_pred             CeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCC-Cce
Confidence            999999999999 9999999999999999988777666533  34789999999999999999 899999999987 666


Q ss_pred             ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN  275 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  275 (334)
                      +..+.+|  ...+.+++|+|+|++|++|+.|++|++|+
T Consensus       319 ~~~l~~h--~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          319 VSILFGH--ENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECCC--SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEECC--CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            7777766  67899999999999999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.5e-39  Score=268.17  Aligned_cols=240  Identities=17%  Similarity=0.201  Sum_probs=200.6

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++|+|+|++|++|+.|++|++||+.+++..              ..+. .|...|.+++|       +|++++|+
T Consensus        66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~--------------~~~~-~h~~~v~~~~~-------~~~~~~l~  123 (319)
T 3frx_A           66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETY--------------QRFV-GHKSDVMSVDI-------DKKASMII  123 (319)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--------------EEEE-CCSSCEEEEEE-------CTTSCEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCee--------------EEEc-cCCCcEEEEEE-------cCCCCEEE
Confidence            46899999999999999999999999999998765              3444 35678988887       67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC------CEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG------NKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      +++.|+.|++||+. ++.+..+..+..     .|.+++|+|..      ..|++++ |+.|++||++. .+...    .+
T Consensus       124 s~s~D~~i~vwd~~-~~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~----~~  192 (319)
T 3frx_A          124 SGSRDKTIKVWTIK-GQCLATLLGHND-----WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEA----DF  192 (319)
T ss_dssp             EEETTSCEEEEETT-SCEEEEECCCSS-----CEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEE----EE
T ss_pred             EEeCCCeEEEEECC-CCeEEEEeccCC-----cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhhe----ee
Confidence            99999999999985 556666766544     89999999854      4788887 99999999985 44333    57


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP  234 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~  234 (334)
                      .+|...|.+++|+|+++ +|++++.||.|++||+++++.+..+.. ...|.+++|+|++.+|++++  +..+++|++.. 
T Consensus       193 ~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~--~~~i~v~~~~~-  267 (319)
T 3frx_A          193 IGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT--ATGIKVFSLDP-  267 (319)
T ss_dssp             CCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE--TTEEEEEEETT-
T ss_pred             cCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc--CCCcEEEEeCc-
Confidence            88999999999999999 999999999999999999999888875 46899999999999999887  55699999986 


Q ss_pred             Cccceeeccc------ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         235 GCILHTFPRQ------VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       235 ~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ...+..+..+      .....+.+++|+|+|++|++|+.||.|++||+.++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          268 QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            4444443321      12456788999999999999999999999998764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-39  Score=273.09  Aligned_cols=259  Identities=14%  Similarity=0.161  Sum_probs=204.5

Q ss_pred             eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEE-cCccccccccceeEEEEcCCCCEEEE
Q psy2305          51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATY-RPYNQVDEVTHAYSLAFSLDGNKIYA  129 (334)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~  129 (334)
                      ..+.+|....|+.++|       +|++++|++++.|+.|+|||+.++...... ....|..   .|.+++|+|++++|++
T Consensus         9 ~~~~~h~~~~v~~l~~-------sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~---~v~~~~~sp~g~~l~s   78 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAW-------NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR---TVRKVAWSPCGNYLAS   78 (345)
T ss_dssp             EEECCSTTSCEEEEEE-------CTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSS---CEEEEEECTTSSEEEE
T ss_pred             eeecCCCCCcEEEEEE-------CCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCC---cEEEEEECCCCCEEEE
Confidence            4555555558888888       779999999999999999999887643222 1112322   8999999999999999


Q ss_pred             ee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC---ceEeeccCCCCeE
Q psy2305         130 GF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR---PLFFLKGHNGGIT  205 (334)
Q Consensus       130 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~i~  205 (334)
                      ++ |+.+++||+.........   .+.+|...|.+++|+|+++ +|++++.|+.|++||++++.   .+..+.+|...|.
T Consensus        79 ~s~D~~v~iw~~~~~~~~~~~---~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~  154 (345)
T 3fm0_A           79 ASFDATTCIWKKNQDDFECVT---TLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK  154 (345)
T ss_dssp             EETTSCEEEEEECCC-EEEEE---EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred             EECCCcEEEEEccCCCeEEEE---EccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence            98 999999999863222222   5788999999999999999 99999999999999998764   4566788999999


Q ss_pred             EEEEccCCcEEEeeecCCCeEEEEEccCCCc--cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCC
Q psy2305         206 HLEFSSNGILLFSGARKDCEIICWDLRNPGC--ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPS  283 (334)
Q Consensus       206 ~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  283 (334)
                      +++|+|++++|++++ .|+.|++||.+. +.  ....+.+|  ...+.+++|+|+|++|++++.|++|++|+........
T Consensus       155 ~~~~~p~~~~l~s~s-~d~~i~~w~~~~-~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~  230 (345)
T 3fm0_A          155 HVVWHPSQELLASAS-YDDTVKLYREEE-DDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ  230 (345)
T ss_dssp             EEEECSSSSCEEEEE-TTSCEEEEEEET-TEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT
T ss_pred             EEEECCCCCEEEEEe-CCCcEEEEEecC-CCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc
Confidence            999999999999999 899999999986 43  33455555  6789999999999999999999999999975432110


Q ss_pred             C---CCccccccccceecc-cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         284 S---PYEESVQEPLYKFSA-HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       284 ~---~~~~~~~~~~~~~~~-~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .   ......++.+..+.+ |...|.+++|  +|++    ..|++++.|+.+++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~----~~l~s~~~d~~i~v  278 (345)
T 3fm0_A          231 GVACSGSDPSWKCICTLSGFHSRTIYDIAW--CQLT----GALATACGDDAIRV  278 (345)
T ss_dssp             CCCCC---CEEEEEEEECSSCSSCEEEEEE--CTTT----CCEEEEETTSCEEE
T ss_pred             cceeeccCCccceeEEecCCCCCcEEEEEE--ecCC----CEEEEEeCCCeEEE
Confidence            0   001111233344444 7789999999  9999    99999999998875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=264.57  Aligned_cols=272  Identities=16%  Similarity=0.182  Sum_probs=223.6

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeee-eeceeEEEEEEecccceecCCCcEEEE
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKI-KEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .++|+||+++ +||+| .|++|+|||+.+++..              ..+.. .|...|.+++|       +|++++|++
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~--------------~~~~~~~~~~~V~~v~~-------~~~~~~l~s   84 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL--------------QLLQMEQPGEYISSVAW-------IKEGNYLAV   84 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE--------------EEEECCSTTCCEEEEEE-------CTTSSEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE--------------EEEEecCCCCeEEEEEE-------CCCCCEEEE
Confidence            4679999986 77776 5899999999999876              34443 35677998888       679999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      |+.|+.|++||+++++.+..+..|..     .+.+  +++++..+++++ ++.+++|+.........    .+.+|...+
T Consensus        85 gs~Dg~v~iw~~~~~~~~~~~~~h~~-----~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  153 (318)
T 4ggc_A           85 GTSSAEVQLWDVQQQKRLRNMTSHSA-----RVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVA----TLSGHSQEV  153 (318)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSS-----CEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEE----EEECCSSCE
T ss_pred             EECCCcEEEeecCCceeEEEecCccc-----eEEE--eecCCCEEEEEecCCceEeeecCCCceeEE----EEcCccCce
Confidence            99999999999999999998887543     4444  555677899887 99999999987444444    578899999


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCc----eEeeccCCCCeEEEEEccCCcEE---EeeecCCCeEEEEEccCC
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRP----LFFLKGHNGGITHLEFSSNGILL---FSGARKDCEIICWDLRNP  234 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l---~~~~~~d~~i~iwd~~~~  234 (334)
                      ..+.++++++ ++++++.|+.|++||+++++.    ......+.+.|.+++++|++..+   ++++ .++.|++||.+. 
T Consensus       154 ~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~i~lwd~~~-  230 (318)
T 4ggc_A          154 CGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT-SDRHIRIWNVCS-  230 (318)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT-TTCEEEEEETTT-
T ss_pred             EEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC-CCCEEEEEeccc-
Confidence            9999999999 999999999999999987653    34456688899999999977643   3566 789999999987 


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEeee--cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN--TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHH  312 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s  312 (334)
                      ........   ....+..+.|+|++..+++++  .|+.|++||+.++            +++..+.+|.+.|++++|  +
T Consensus       231 ~~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~------------~~~~~l~gH~~~V~~l~~--s  293 (318)
T 4ggc_A          231 GACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------------AKVAELKGHTSRVLSLTM--S  293 (318)
T ss_dssp             CCEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC------------CEEEEECCCSSCEEEEEE--C
T ss_pred             cccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC------------cEEEEEcCCCCCEEEEEE--c
Confidence            44333332   355677888999998887654  7999999999998            788999999999999999  9


Q ss_pred             CCcccceeeEEeeecceeeee
Q psy2305         313 KFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       313 ~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |++    ++|||||.||+|++
T Consensus       294 pdg----~~l~S~s~D~~v~i  310 (318)
T 4ggc_A          294 PDG----ATVASAAADETLRL  310 (318)
T ss_dssp             TTS----SCEEEEETTTEEEE
T ss_pred             CCC----CEEEEEecCCeEEE
Confidence            999    99999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.3e-39  Score=265.00  Aligned_cols=244  Identities=12%  Similarity=0.161  Sum_probs=198.7

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCC--CeeeEEEcCccccccccceeEEEEcCC--CCEEEEee
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVG--GEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF  131 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~  131 (334)
                      .|...|.+++|       +|+|++|++++.|++|++||+..  .+.+..+..|..     .|++++|+|+  +++|++++
T Consensus         7 ~h~~~V~~~~~-------s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~-----~V~~v~~s~~~~g~~l~s~s   74 (297)
T 2pm7_B            7 AHNEMIHDAVM-------DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCS   74 (297)
T ss_dssp             SCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSS-----CEEEEEECCGGGCSEEEEEE
T ss_pred             CCcCceEEEEE-------CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccC-----CeEEEEecCCCcCCEEEEEc
Confidence            46788988887       77999999999999999999874  356777877655     8999999864  88999988


Q ss_pred             -CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCCC--ceEeeccCCCCeEE
Q psy2305         132 -LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDGR--PLFFLKGHNGGITH  206 (334)
Q Consensus       132 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~  206 (334)
                       |++|++||++........   .+..|...|.+++|+|+  +. +|++++.|+.|++||++++.  ....+.+|...|.+
T Consensus        75 ~D~~v~iWd~~~~~~~~~~---~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~  150 (297)
T 2pm7_B           75 YDGKVMIWKEENGRWSQIA---VHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (297)
T ss_dssp             TTTEEEEEEBSSSCBCCCE---EECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred             CCCEEEEEEcCCCceEEEE---EeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecccCccce
Confidence             999999999862211111   45779999999999998  77 99999999999999998763  24567889999999


Q ss_pred             EEEccC-------------CcEEEeeecCCCeEEEEEccCCCc---cceeecccccCCceEEEEecCCC---ceEEeeec
Q psy2305         207 LEFSSN-------------GILLFSGARKDCEIICWDLRNPGC---ILHTFPRQVSTNQRVYFDLTSCS---NYLLSGNT  267 (334)
Q Consensus       207 ~~~~~~-------------~~~l~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~  267 (334)
                      ++|+|+             +++|++++ .|+.|++||++....   ....+.+|  ...+.+++|+|++   .+|++++.
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lwd~~~~~~~~~~~~~l~~H--~~~V~~v~~sp~~~~~~~las~s~  227 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYMASVSQ  227 (297)
T ss_dssp             EEECCCC------------CCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEET
T ss_pred             EeecCCcccccccCCCCCCcceEEEEc-CCCcEEEEEEcCCCceEEEEEEecCC--CCceEEEEECCCCCCceEEEEEEC
Confidence            999997             57999999 899999999987322   34455555  6789999999984   89999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCcccccccccee--cccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         268 NGDLSIWNVNTSNLPSSPYEESVQEPLYKF--SAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       268 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |++|++||++.....         .....+  ..|...|.+++|  +|++    ++||+++.|++|++
T Consensus       228 D~~v~iWd~~~~~~~---------~~~~~~~~~~~~~~v~~~~~--s~~g----~~las~~~D~~v~l  280 (297)
T 2pm7_B          228 DRTCIIWTQDNEQGP---------WKKTLLKEEKFPDVLWRASW--SLSG----NVLALSGGDNKVTL  280 (297)
T ss_dssp             TSCEEEEEESSTTSC---------CEEEESSSSCCSSCEEEEEE--CSSS----CCEEEEETTSCEEE
T ss_pred             CCcEEEEEeCCCCCc---------cceeeeecccCCCcEEEEEE--CCCC----CEEEEEcCCCcEEE
Confidence            999999999874211         111122  467788999999  9999    99999999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.6e-39  Score=274.25  Aligned_cols=291  Identities=16%  Similarity=0.165  Sum_probs=226.2

Q ss_pred             CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC-CCcE
Q psy2305           2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG-FTSY   79 (334)
Q Consensus         2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~   79 (334)
                      +.|.+++|+| ++++||+++.||.|++|++.++.....+.......  ........|...|.+++|       +| ++++
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~-------~~~~~~~  114 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS--IGRDHPDVHRYSVETVQW-------YPHDTGM  114 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE--ECTTCTTCCSSCEEEEEE-------CTTCTTC
T ss_pred             CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc--ccccccccCCCcEEEEEE-------ccCCCcE
Confidence            5799999999 99999999999999999999877542110000000  000000136788999888       55 6779


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC---CEEEEee-CCcEEEEEcCCCCCeeeeeccccc
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG---NKIYAGF-LSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      |++++.|+.|++||+.+++....+....      .+.++.|+|.+   .++++++ ++.|++||+++ +....    .+.
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~----~~~  183 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQTADVFNFEE------TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS-GSCSH----ILQ  183 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSS------CEEEEEECSSCSSCCEEEEEESSSSEEEEESSS-SCCCE----EEC
T ss_pred             EEEEeCCCeEEEeeCCCCccceeccCCC------ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC-cceee----eec
Confidence            9999999999999999999888776322      78899999854   4888887 99999999986 44444    467


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC-ceEee---------------ccCCCCeEEEEEccCCcEEEee
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR-PLFFL---------------KGHNGGITHLEFSSNGILLFSG  219 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~i~~~~~~~~~~~l~~~  219 (334)
                      .|...|.+++|+|+++.++++++.||.|++||++++. .+..+               ..|...|.+++|+|++++|+++
T Consensus       184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  263 (408)
T 4a11_B          184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV  263 (408)
T ss_dssp             CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence            8999999999999998568999999999999998765 33333               5688999999999999999999


Q ss_pred             ecCCCeEEEEEccCCCccceeeccccc----CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccc
Q psy2305         220 ARKDCEIICWDLRNPGCILHTFPRQVS----TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY  295 (334)
Q Consensus       220 ~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  295 (334)
                      + .|+.|++||+++ +.....+..+..    ......+ ....+..+++++.++.|++||+.++            +.+.
T Consensus       264 ~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~d~~~~------------~~~~  328 (408)
T 4a11_B          264 G-TDNRMRLWNSSN-GENTLVNYGKVCNNSKKGLKFTV-SCGCSSEFVFVPYGSTIAVYTVYSG------------EQIT  328 (408)
T ss_dssp             E-TTSCEEEEETTT-CCBCCCCCCCCCCCCSSCCCCEE-CCSSSSCEEEEEETTEEEEEETTTC------------CEEE
T ss_pred             c-CCCeEEEEECCC-CccceeccccccccccccceeEE-ecCCCceEEEEecCCEEEEEECcCC------------ccee
Confidence            9 899999999997 443333322111    1111122 2334566777788999999999998            7888


Q ss_pred             eecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         296 KFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       296 ~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+.+|...|.+++|  +|++    ++|++++.||.|++
T Consensus       329 ~~~~~~~~v~~~~~--s~~~----~~l~s~~~dg~i~i  360 (408)
T 4a11_B          329 MLKGHYKTVDCCVF--QSNF----QELYSGSRDCNILA  360 (408)
T ss_dssp             EECCCSSCEEEEEE--ETTT----TEEEEEETTSCEEE
T ss_pred             eeccCCCeEEEEEE--cCCC----CEEEEECCCCeEEE
Confidence            89999999999999  9999    99999999999875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-39  Score=268.79  Aligned_cols=248  Identities=13%  Similarity=0.145  Sum_probs=186.4

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|++++|+|++++||+|+.|++|+||++.......       ........+. .|...|.+++|       +|++++|+
T Consensus        59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~-------~~~~~~~~~~-~h~~~V~~v~~-------sp~g~~la  123 (330)
T 2hes_X           59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT-------FEMDLLAIIE-GHENEVKGVAW-------SNDGYYLA  123 (330)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEC--------------CCCEEEEEEC-----CEEEEEE-------CTTSCEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc-------ccceeEEEEc-CCCCcEEEEEE-------CCCCCEEE
Confidence            469999999999999999999999999986432100       0000112333 46678988888       67999999


Q ss_pred             EeeCCCcEEEEeCCCC----eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          82 CSSMYAPIHLWDSVGG----EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +++.|++|++||+...    +.+..+..|..     .|.+++|+|++++|++++ |+.|++||+.........   .+.+
T Consensus       124 s~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~---~~~~  195 (330)
T 2hes_X          124 TCSRDKSVWIWETDESGEEYECISVLQEHSQ-----DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVA---VLNG  195 (330)
T ss_dssp             EEETTSCEEEEECCTTCCCCEEEEEECCCSS-----CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEE---EECC
T ss_pred             EEeCCCEEEEEeccCCCCCeEEEEEeccCCC-----ceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEE---EccC
Confidence            9999999999999432    45566766554     899999999999999998 999999998752212222   5788


Q ss_pred             cccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCC--------CceEeecc-CCCCeEEEEEccCCcEEEeeecCCCe
Q psy2305         157 RKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDG--------RPLFFLKG-HNGGITHLEFSSNGILLFSGARKDCE  225 (334)
Q Consensus       157 ~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~  225 (334)
                      |...|.+++|+|+  +. .|++++.|++|++||++.+        .....+.+ |...|.+++|++++ +|++++ .|+.
T Consensus       196 h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~-~dg~  272 (330)
T 2hes_X          196 HEGTVWSSDFDKTEGVF-RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG-ADGV  272 (330)
T ss_dssp             CSSCEEEEEECCSSSSC-EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE-TTSC
T ss_pred             CCCcEEEEEecCCCCee-EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe-CCCE
Confidence            9999999999998  66 8999999999999998754        23444554 88999999999765 789999 8999


Q ss_pred             EEEEEccCCCc--cceee-cccccCC-ceEEEEecC--CCceEEeeecCCcEEEEeCCC
Q psy2305         226 IICWDLRNPGC--ILHTF-PRQVSTN-QRVYFDLTS--CSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       226 i~iwd~~~~~~--~~~~~-~~~~~~~-~~~~~~~s~--~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      |++||... +.  ..... ..|  .. .+.+++|+|  ++++|++++.||.|++||++.
T Consensus       273 v~iw~~~~-~~~~~~~~~~~~h--~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          273 LAVYEEVD-GEWKVFAKRALCH--GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEEEET-TEEEEEEEESCTT--TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEEEcCC-CceEEEecccccc--ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            99999986 42  22222 233  43 788899999  789999999999999999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.1e-39  Score=269.26  Aligned_cols=275  Identities=12%  Similarity=0.083  Sum_probs=225.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-EE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-YF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~l   80 (334)
                      +.|.+++|+|++++|++++.|+.|++|++.++...            ........+...|.+++|       +|+++ +|
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~------------~~~~~~~~~~~~v~~~~~-------~~~~~~~l   72 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN------------VDLLQSLRYKHPLLCCNF-------IDNTDLQI   72 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE------------EEEEEEEECSSCEEEEEE-------EESSSEEE
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc------------ccceeeeecCCceEEEEE-------CCCCCcEE
Confidence            57999999999999999999999999999887621            001222356788999888       56899 99


Q ss_pred             EEeeCCCcEEEEeC-CCCeeeEEEcC--ccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCC-------Ceeee
Q psy2305          81 LCSSMYAPIHLWDS-VGGEIKATYRP--YNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPG-------RECVS  149 (334)
Q Consensus        81 ~~~~~d~~i~iwd~-~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~-------~~~~~  149 (334)
                      ++++.||.|++||+ .+++. ..+..  +..     .|.+++|+| +++|++++ |+.|++||++...       .... 
T Consensus        73 ~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~-----~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-  144 (342)
T 1yfq_A           73 YVGTVQGEILKVDLIGSPSF-QALTNNEANL-----GICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS-  144 (342)
T ss_dssp             EEEETTSCEEEECSSSSSSE-EECBSCCCCS-----CEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-
T ss_pred             EEEcCCCeEEEEEeccCCce-EeccccCCCC-----ceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCee-
Confidence            99999999999999 77755 45554  443     899999999 99999887 9999999987410       1111 


Q ss_pred             ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CC--ceEeeccCCCCeEEEEEcc-CCcEEEeeecCCCe
Q psy2305         150 RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GR--PLFFLKGHNGGITHLEFSS-NGILLFSGARKDCE  225 (334)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~  225 (334)
                         ....|...+.+++|+|++   +++++.++.|++||+++ +.  .......|...+.+++|+| ++++|++++ .||.
T Consensus       145 ---~~~~~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~dg~  217 (342)
T 1yfq_A          145 ---NNTKVKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-IDGR  217 (342)
T ss_dssp             ---SSSSSCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-TTSE
T ss_pred             ---eEEeeCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-cCCc
Confidence               122388899999999884   88899999999999988 54  3334456888999999999 999999999 8999


Q ss_pred             EEEEEccCC-----Cccceeeccccc-------CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccc
Q psy2305         226 IICWDLRNP-----GCILHTFPRQVS-------TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEP  293 (334)
Q Consensus       226 i~iwd~~~~-----~~~~~~~~~~~~-------~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  293 (334)
                      +++|+++..     ......+..+..       ...+.+++|+|++++|++++.||.|++||+.++            +.
T Consensus       218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------------~~  285 (342)
T 1yfq_A          218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR------------KK  285 (342)
T ss_dssp             EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT------------EE
T ss_pred             EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH------------hH
Confidence            999999874     266667766533       347899999999999999999999999999988            67


Q ss_pred             cceeccc-ccccceeeeccCCCcccceeeEEeeeccee
Q psy2305         294 LYKFSAH-QDCTNGVRWKHHKFERDLLVADATCSGQIT  330 (334)
Q Consensus       294 ~~~~~~~-~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~  330 (334)
                      +..+.+| ...|.+++    |++    ++|++++.||.
T Consensus       286 ~~~~~~~h~~~v~~~~----~~~----~~l~s~s~Dg~  315 (342)
T 1yfq_A          286 IKNFAKFNEDSVVKIA----CSD----NILCLATSDDT  315 (342)
T ss_dssp             EEECCCCSSSEEEEEE----ECS----SEEEEEEECTH
T ss_pred             hhhhhcccCCCceEec----CCC----CeEEEEecCCc
Confidence            8888888 88888877    789    99999999997

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-38  Score=267.09  Aligned_cols=242  Identities=16%  Similarity=0.153  Sum_probs=192.1

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++|+|++.+|++++.|++|++||+.+++..              ..+. .|...|.+++|       +|++++|+
T Consensus        77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~--------------~~~~-~h~~~v~~v~~-------sp~~~~l~  134 (343)
T 2xzm_R           77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTY--------------KRFV-GHQSEVYSVAF-------SPDNRQIL  134 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEE--------------EEEE-CCCSCEEEEEE-------CSSTTEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE--------------EEEc-CCCCcEEEEEE-------CCCCCEEE
Confidence            46899999999999999999999999999988765              3444 36678988888       67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC----------CEEEEee-CCcEEEEEcCCCCCeeeee
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG----------NKIYAGF-LSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~-d~~i~i~d~~~~~~~~~~~  150 (334)
                      +++.|+.|++||+.............+..   .|.+++|+|++          .+|++++ |+.|++||..  .....  
T Consensus       135 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~--  207 (343)
T 2xzm_R          135 SAGAEREIKLWNILGECKFSSAEKENHSD---WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRY--  207 (343)
T ss_dssp             EEETTSCEEEEESSSCEEEECCTTTSCSS---CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEE--
T ss_pred             EEcCCCEEEEEeccCCceeeeecccCCCc---eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeE--
Confidence            99999999999997433322221112322   79999999987          6888887 9999999954  33333  


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                        .+.+|...|.+++|+|+++ +|++|+.||.|++||+++. .....+. +...|.+++|+|++++++++.  |+.|++|
T Consensus       208 --~~~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~--d~~v~iw  281 (343)
T 2xzm_R          208 --TFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGT--DQGVKIF  281 (343)
T ss_dssp             --EEECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEE--SSCEEEE
T ss_pred             --EEcCccccceEEEECCCCC-EEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEEC--CCCEEEE
Confidence              5778999999999999999 9999999999999999544 4444443 556799999999998887655  8889999


Q ss_pred             EccCCCccce--eeccc---------ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         230 DLRNPGCILH--TFPRQ---------VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       230 d~~~~~~~~~--~~~~~---------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      |+.+ +....  .+...         .+...+.+++|+|+|++|++|+.||.|++|+++++
T Consensus       282 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          282 NLMT-QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             ESSS-CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             EeCC-CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            9986 33322  22211         23456889999999999999999999999998765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.9e-38  Score=261.98  Aligned_cols=240  Identities=16%  Similarity=0.245  Sum_probs=207.4

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCc
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSE  134 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~  134 (334)
                      +|...|.+++|       +|++++|++++.|+.|++|++.+++....+..+..     .|.+++|+|++++|++++ |+.
T Consensus        21 gh~~~v~~~~~-------s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~~~d~~   88 (312)
T 4ery_A           21 GHTKAVSSVKF-------SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-----GISDVAWSSDSNLLVSASDDKT   88 (312)
T ss_dssp             CCSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSE
T ss_pred             ccCCcEEEEEE-------CCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCC-----ceEEEEEcCCCCEEEEECCCCE
Confidence            46678999888       67999999999999999999999998888877655     899999999999999987 999


Q ss_pred             EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCc
Q psy2305         135 VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGI  214 (334)
Q Consensus       135 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  214 (334)
                      |++||+++ ++...    .+.+|...|.+++|+|+++ +|++++.|+.|++||+++++.+..+..|..+|.+++|+|+++
T Consensus        89 i~vwd~~~-~~~~~----~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (312)
T 4ery_A           89 LKIWDVSS-GKCLK----TLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS  162 (312)
T ss_dssp             EEEEETTT-CCEEE----EEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             EEEEECCC-CcEEE----EEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC
Confidence            99999986 55544    5788999999999999999 999999999999999999999999999999999999999999


Q ss_pred             EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccc
Q psy2305         215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL  294 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  294 (334)
                      +|++++ .|+.|++||+++ ++.+..+... ....+..++|+|++++|++++.|+.|++||+.++            +.+
T Consensus       163 ~l~~~~-~d~~i~~wd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------------~~~  227 (312)
T 4ery_A          163 LIVSSS-YDGLCRIWDTAS-GQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG------------KCL  227 (312)
T ss_dssp             EEEEEE-TTSCEEEEETTT-CCEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT------------EEE
T ss_pred             EEEEEe-CCCcEEEEECCC-CceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC------------cEE
Confidence            999999 899999999997 5555555432 3456778999999999999999999999999987            677


Q ss_pred             ceecccccccce--eeeccCCCcccceeeEEeeecceeeee
Q psy2305         295 YKFSAHQDCTNG--VRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       295 ~~~~~~~~~i~~--~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ..+.+|...+..  ..+. .+++    .+|++++.||.|++
T Consensus       228 ~~~~~~~~~~~~~~~~~~-~~~~----~~l~sg~~dg~i~v  263 (312)
T 4ery_A          228 KTYTGHKNEKYCIFANFS-VTGG----KWIVSGSEDNLVYI  263 (312)
T ss_dssp             EEECSSCCSSSCCCEEEE-CSSS----CEEEECCTTSCEEE
T ss_pred             EEEEecCCceEEEEEEEE-eCCC----cEEEEECCCCEEEE
Confidence            778777764433  2340 3677    89999999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.6e-38  Score=306.91  Aligned_cols=289  Identities=13%  Similarity=0.140  Sum_probs=239.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|+|+|++||+|+.||+|++||+.+++..              ..+. .|...|.+++|       +|++++|+
T Consensus       616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~--------------~~~~-~h~~~v~~~~~-------s~~~~~l~  673 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL--------------LDIK-AHEDEVLCCAF-------SSDDSYIA  673 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--------------EEEC-CCSSCEEEEEE-------CTTSSEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE--------------EEec-cCCCCEEEEEE-------ecCCCEEE
Confidence            57999999999999999999999999999998865              3444 46678988888       67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      +++.|+.|++||+.+++.+..+..+..     .|.+++|+|+  +.++++++ |+.|++||+.+ +....    .+.+|.
T Consensus       674 s~~~d~~v~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~~~----~~~~h~  743 (1249)
T 3sfz_A          674 TCSADKKVKIWDSATGKLVHTYDEHSE-----QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-KECRN----TMFGHT  743 (1249)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECSSSSCCEEEEEETTSCEEEEETTS-SSEEE----EECCCS
T ss_pred             EEeCCCeEEEEECCCCceEEEEcCCCC-----cEEEEEEecCCCceEEEEEeCCCeEEEEECCC-cchhh----eecCCC
Confidence            999999999999999999999887655     8999999995  45777887 99999999997 55554    577899


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-----------------------------------------
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-----------------------------------------  197 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------------------------------------  197 (334)
                      ..|.+++|+|+++ ++++++.||.|++||+++++....+                                         
T Consensus       744 ~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~  822 (1249)
T 3sfz_A          744 NSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL  822 (1249)
T ss_dssp             SCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEE
T ss_pred             CCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEE
Confidence            9999999999999 9999999999999998766433222                                         


Q ss_pred             --------------ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEE
Q psy2305         198 --------------KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLL  263 (334)
Q Consensus       198 --------------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~  263 (334)
                                    .+|...|.+++|+|+++++++++ .|+.|++||+.+ +.....+.+|  ...+.+++|+|+|++|+
T Consensus       823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vwd~~~-~~~~~~~~~h--~~~v~~v~~spdg~~l~  898 (1249)
T 3sfz_A          823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL-SQYCVELWNIDS-RLKVADCRGH--LSWVHGVMFSPDGSSFL  898 (1249)
T ss_dssp             EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC-SSSCEEEEETTT-TEEEEEECCC--SSCEEEEEECTTSSEEE
T ss_pred             EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-CceeeecCCC--ccceEEEEECCCCCEEE
Confidence                          26778899999999999999999 899999999997 6667777765  66788899999999999


Q ss_pred             eeecCCcEEEEeCCCCCCC---------------------------------------------------CCCCcc----
Q psy2305         264 SGNTNGDLSIWNVNTSNLP---------------------------------------------------SSPYEE----  288 (334)
Q Consensus       264 ~~~~dg~i~iwd~~~~~~~---------------------------------------------------~~~~~~----  288 (334)
                      +++.||.|++|++......                                                   ++|+..    
T Consensus       899 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~  978 (1249)
T 3sfz_A          899 TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF  978 (1249)
T ss_dssp             EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE
T ss_pred             EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE
Confidence            9999999999986431000                                                   111111    


Q ss_pred             ------------ccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         289 ------------SVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       289 ------------~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                                  ...+....+.+|...|.+++|  +|++    ++|++++.||.+++
T Consensus       979 g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~--s~dg----~~l~s~~~dg~i~v 1029 (1249)
T 3sfz_A          979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF--TADG----KTLISSSEDSVIQV 1029 (1249)
T ss_dssp             EETTSCCEEEETTTTSCEEECCCCSSCCCCEEE--CSSS----SCEEEECSSSBEEE
T ss_pred             EcCCCCEEEEEcCCCceeeecccCCCceEEEEE--CCCC----CEEEEEcCCCEEEE
Confidence                        112445566789999999999  9999    99999999999875

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4e-39  Score=274.30  Aligned_cols=249  Identities=15%  Similarity=0.206  Sum_probs=209.3

Q ss_pred             eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305          51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG  130 (334)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (334)
                      ..+. +|.+.|++++|       +|++++|++|+.|++|++||+.+++....+..+..     .|.+++|+|++++|+++
T Consensus        60 ~~l~-gH~~~V~~~~~-------sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~-----~v~~~~~s~~g~~las~  126 (380)
T 3iz6_a           60 RTLQ-GHSGKVYSLDW-------TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP-----WVMECAFAPNGQSVACG  126 (380)
T ss_dssp             EEEC-CCSSCEEEEEE-------CTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT-----TCCCCEECTTSSEEEEC
T ss_pred             eccc-ccccEEEEEEE-------cCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC-----CEEEEEECCCCCEEEEe
Confidence            3444 46688999888       67999999999999999999999999988887655     89999999999999999


Q ss_pred             e-CCcEEEEEcCCCCCeeee--ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-----ccCCC
Q psy2305         131 F-LSEVKIFSTDRPGRECVS--RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-----KGHNG  202 (334)
Q Consensus       131 ~-d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~  202 (334)
                      + |+.+++|++.........  ....+.+|...+.++.|.|++...|++|+.|++|++||+++++.+..+     .+|..
T Consensus       127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~  206 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA  206 (380)
T ss_dssp             CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred             eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence            8 999999999752111000  000467899999999999986657999999999999999999988777     67899


Q ss_pred             CeEEEEEcc-CCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCC
Q psy2305         203 GITHLEFSS-NGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL  281 (334)
Q Consensus       203 ~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  281 (334)
                      .|.+++|+| ++++|++++ .|+.|++||++.....+..+.+|  ...+.+++|+|++++|++++.||+|++||++++  
T Consensus       207 ~v~~~~~~~~~~~~l~sgs-~D~~v~~wd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~--  281 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGS-CDTTVRLWDLRITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG--  281 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEE-TTSCEEEEETTTTCCCCEEECCC--SSCCCEEEECTTSSEEEEECSSSCEEEEETTTT--
T ss_pred             CeEEEEeecCCCCEEEEEE-CCCeEEEEECCCCCcceEEECCc--CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC--
Confidence            999999987 889999999 89999999998646677777776  667889999999999999999999999999987  


Q ss_pred             CCCCCccccccccceeccc-------ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         282 PSSPYEESVQEPLYKFSAH-------QDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                                +.+..+..+       ...|.+++|  +|++    ++|++|+.||.|++
T Consensus       282 ----------~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g----~~l~~g~~dg~i~v  324 (380)
T 3iz6_a          282 ----------HQLQVYNREPDRNDNELPIVTSVAF--SISG----RLLFAGYSNGDCYV  324 (380)
T ss_dssp             ----------EEEEEECCCCSSSCCSSCSCSEEEE--CSSS----SEEEEECTTSCEEE
T ss_pred             ----------cEEEEecccccccccccCceEEEEE--CCCC----CEEEEEECCCCEEE
Confidence                      444444332       234899999  9999    99999999999875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=7.4e-38  Score=262.81  Aligned_cols=254  Identities=18%  Similarity=0.221  Sum_probs=203.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|+|++++||+++.||.|++|++.++....          .....+. .|...|.+++|+|     ..++++|+
T Consensus        12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----------~~~~~~~-~~~~~v~~~~~~~-----~~d~~~l~   75 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW----------ELSDSWR-AHDSSIVAIDWAS-----PEYGRIIA   75 (351)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE----------EEEEEEE-CCSSCEEEEEECC-----GGGCSEEE
T ss_pred             cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc----------eecceec-cCCCcEEEEEEcC-----CCCCCEEE
Confidence            579999999999999999999999999998764320          0112233 4668899998843     12689999


Q ss_pred             EeeCCCcEEEEeCCCC---------eeeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeee
Q psy2305          82 CSSMYAPIHLWDSVGG---------EIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVS  149 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~  149 (334)
                      +++.|+.|++||+.++         +....+..+..     .|.+++|+|+  +++|++++ |+.|++||+++ ++....
T Consensus        76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~  149 (351)
T 3f3f_A           76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKG-----SLYSVKFAPAHLGLKLACLGNDGILRLYDALE-PSDLRS  149 (351)
T ss_dssp             EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTCEEEEEECSS-TTCTTC
T ss_pred             EEcCCCeEEEEecCCCcccccccCcceeeeecccCC-----ceeEEEEcCCCCCcEEEEecCCCcEEEecCCC-hHHhcc
Confidence            9999999999999876         45666665444     8999999999  99999887 99999999986 332211


Q ss_pred             e---------cccccccccceEEEEEcCC---CCcEEEEeecCCeEEEEECCCCCc--eEeeccCCCCeEEEEEccCC--
Q psy2305         150 R---------NLKPWFRKNIVSAIAINPV---HPDICALGTYSKIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNG--  213 (334)
Q Consensus       150 ~---------~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~--  213 (334)
                      .         ......|...+.+++|+|+   +. ++++++.++.+.+|+...++.  +..+.+|...|.+++|+|++  
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR  228 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred             ccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence            0         0012367889999999997   77 999999999998888877765  67788899999999999998  


Q ss_pred             --cEEEeeecCCCeEEEEEccCCC---------------------------------------------ccceeeccccc
Q psy2305         214 --ILLFSGARKDCEIICWDLRNPG---------------------------------------------CILHTFPRQVS  246 (334)
Q Consensus       214 --~~l~~~~~~d~~i~iwd~~~~~---------------------------------------------~~~~~~~~~~~  246 (334)
                        ++|++++ .|+.|++||++...                                             ..+..+..|  
T Consensus       229 ~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--  305 (351)
T 3f3f_A          229 WYQLIATGC-KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--  305 (351)
T ss_dssp             SSEEEEEEE-TTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--
T ss_pred             cceEEEEEc-CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--
Confidence              8999999 89999999998621                                             233344444  


Q ss_pred             CCceEEEEecCCCceEEeeecCCcEEEEeCCCCCC
Q psy2305         247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL  281 (334)
Q Consensus       247 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  281 (334)
                      ...+.+++|+|++++|++++.||.|++|++.+++.
T Consensus       306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence            56799999999999999999999999999998743

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.1e-38  Score=271.44  Aligned_cols=274  Identities=16%  Similarity=0.211  Sum_probs=226.5

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|.+++|  ++++|++|+.||.|++||+.+++..              ..+. .|...|.+++|         ++++|++
T Consensus       135 ~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~--------------~~~~-~h~~~v~~l~~---------~~~~l~s  188 (435)
T 1p22_A          135 GVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--------------RILT-GHTGSVLCLQY---------DERVIIT  188 (435)
T ss_dssp             CEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--------------EEEC-CCSSCEEEEEC---------CSSEEEE
T ss_pred             cEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEE--------------EEEc-CCCCcEEEEEE---------CCCEEEE
Confidence            4666665  8899999999999999999988765              3444 35678888776         7889999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      |+.||.|++||+.+++.+..+..+..     .|.+++|++  ..+++++ |+.|++||+.. +....... ...+|...|
T Consensus       189 g~~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~--~~l~s~s~dg~i~vwd~~~-~~~~~~~~-~~~~~~~~v  259 (435)
T 1p22_A          189 GSSDSTVRVWDVNTGEMLNTLIHHCE-----AVLHLRFNN--GMMVTCSKDRSIAVWDMAS-PTDITLRR-VLVGHRAAV  259 (435)
T ss_dssp             EETTSCEEEEESSSCCEEEEECCCCS-----CEEEEECCT--TEEEEEETTSCEEEEECSS-SSCCEEEE-EECCCSSCE
T ss_pred             EcCCCeEEEEECCCCcEEEEEcCCCC-----cEEEEEEcC--CEEEEeeCCCcEEEEeCCC-CCCceeee-EecCCCCcE
Confidence            99999999999999999988887554     899999974  4788887 99999999987 33321100 467899999


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceee
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                      .+++|  +++ ++++|+.||.|++||+++++.+..+.+|...|.++.|+  +++|++++ .|+.|++||+++ +..+..+
T Consensus       260 ~~~~~--~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~-~dg~i~iwd~~~-~~~~~~~  332 (435)
T 1p22_A          260 NVVDF--DDK-YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIEC-GACLRVL  332 (435)
T ss_dssp             EEEEE--ETT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTT-CCEEEEE
T ss_pred             EEEEe--CCC-EEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe-CCCeEEEEECCC-CCEEEEE
Confidence            99999  566 99999999999999999999999999999999999994  67999999 899999999998 7777888


Q ss_pred             cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceee
Q psy2305         242 PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVA  321 (334)
Q Consensus       242 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~  321 (334)
                      ..|  ...+.+++|  ++.+|++|+.||.|++||+.++.....+   .....+..+.+|.+.|.+++|    ++    .+
T Consensus       333 ~~h--~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~----~~----~~  397 (435)
T 1p22_A          333 EGH--EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAP---AGTLCLRTLVEHSGRVFRLQF----DE----FQ  397 (435)
T ss_dssp             CCC--SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSC---TTTTEEEEECCCSSCCCCEEE----CS----SC
T ss_pred             eCC--cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcccc---ccchheeeccCCCCCeEEEEe----CC----CE
Confidence            776  567888877  7899999999999999999776321100   001256778899999999999    67    78


Q ss_pred             EEeeecceeeee
Q psy2305         322 DATCSGQITNVK  333 (334)
Q Consensus       322 l~t~~~d~~i~~  333 (334)
                      |++++.||.|++
T Consensus       398 l~s~s~Dg~i~i  409 (435)
T 1p22_A          398 IVSSSHDDTILI  409 (435)
T ss_dssp             EEECCSSSEEEE
T ss_pred             EEEEeCCCEEEE
Confidence            999999999875

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.9e-39  Score=266.02  Aligned_cols=248  Identities=15%  Similarity=0.145  Sum_probs=197.1

Q ss_pred             eeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcC--CCCEEE
Q psy2305          53 LKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSL--DGNKIY  128 (334)
Q Consensus        53 ~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~  128 (334)
                      +...|...|++++|       +|++++|++|+.|++|++||+.+++  .+..+..|..     .|++++|+|  ++++|+
T Consensus         8 ~~~~H~~~V~~v~~-------s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~-----~V~~v~~~~~~~~~~l~   75 (316)
T 3bg1_A            8 VDTSHEDMIHDAQM-------DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEG-----PVWQVAWAHPMYGNILA   75 (316)
T ss_dssp             ------CCEEEEEE-------CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSS-----CEEEEEECCGGGSSCEE
T ss_pred             ecccccCeEEEeeE-------cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCc-----cEEEEEeCCCCCCCEEE
Confidence            33457789999888       6699999999999999999998775  3556666554     899999986  488999


Q ss_pred             Eee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCCCc---eEeeccCCC
Q psy2305         129 AGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDGRP---LFFLKGHNG  202 (334)
Q Consensus       129 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~  202 (334)
                      +++ |++|++||+++.......   .+.+|...|.+++|+|+  +. +|++|+.|+.|++||++.+..   ...+.+|..
T Consensus        76 s~s~D~~v~iWd~~~~~~~~~~---~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~  151 (316)
T 3bg1_A           76 SCSYDRKVIIWREENGTWEKSH---EHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVKKINNAHTI  151 (316)
T ss_dssp             EEETTSCEEEECCSSSCCCEEE---EECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred             EEECCCEEEEEECCCCcceEEE---EccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence            888 999999999862212222   46789999999999998  66 899999999999999987632   345678999


Q ss_pred             CeEEEEEccC-----------------CcEEEeeecCCCeEEEEEccCCC--ccceeecccccCCceEEEEecCCC----
Q psy2305         203 GITHLEFSSN-----------------GILLFSGARKDCEIICWDLRNPG--CILHTFPRQVSTNQRVYFDLTSCS----  259 (334)
Q Consensus       203 ~i~~~~~~~~-----------------~~~l~~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~----  259 (334)
                      .+.+++|+|+                 +++|++++ .|+.|++||++..+  .+...+.+|  ...+.+++|+|++    
T Consensus       152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~  228 (316)
T 3bg1_A          152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG-CDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPT  228 (316)
T ss_dssp             CBCCCEECCCCCC------CCSCCCCCCCBEECCB-TTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSC
T ss_pred             CcceEEEccccCCccccccccccCccccceEEEec-CCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCC
Confidence            9999999997                 47899999 89999999997522  244556655  6789999999987    


Q ss_pred             ceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         260 NYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       260 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ++|++++.|++|++|++.+....        ......+..|.+.|.+++|  +|++    ++||+++.|+++++
T Consensus       229 ~~las~s~D~~v~iw~~~~~~~~--------~~~~~~~~~~~~~v~~v~~--sp~g----~~las~~~D~~v~l  288 (316)
T 3bg1_A          229 STIASCSQDGRVFIWTCDDASSN--------TWSPKLLHKFNDVVWHVSW--SITA----NILAVSGGDNKVTL  288 (316)
T ss_dssp             CEEEEEETTCEEEEEECSSTTCC--------CCBCCEEEECSSCEEEEEE--CTTT----CCEEEEESSSCEEE
T ss_pred             ceEEEEcCCCeEEEEEccCcccc--------chhhhhhhcCCCcEEEEEE--cCCC----CEEEEEcCCCeEEE
Confidence            88999999999999999873110        0122345668889999999  9999    99999999999875

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-37  Score=266.22  Aligned_cols=242  Identities=17%  Similarity=0.237  Sum_probs=204.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++|+|++++|++|+.||.|++||+.+++..              ..+. .|...|.+++|         ++++|+
T Consensus       135 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--------------~~~~-~~~~~v~~~~~---------~~~~l~  190 (401)
T 4aez_A          135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL--------------RTMA-GHQARVGCLSW---------NRHVLS  190 (401)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--------------EEEC-CCSSCEEEEEE---------ETTEEE
T ss_pred             CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE--------------EEec-CCCCceEEEEE---------CCCEEE
Confidence            46999999999999999999999999999988765              3444 46678999888         457999


Q ss_pred             EeeCCCcEEEEeCC-CCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSMYAPIHLWDSV-GGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +++.||.|++||+. .+.....+..+..     .|.+++|+|++++|++++ |+.|++||+++ +....    .+..|..
T Consensus       191 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~----~~~~~~~  260 (401)
T 4aez_A          191 SGSRSGAIHHHDVRIANHQIGTLQGHSS-----EVCGLAWRSDGLQLASGGNDNVVQIWDARS-SIPKF----TKTNHNA  260 (401)
T ss_dssp             EEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTC-SSEEE----EECCCSS
T ss_pred             EEcCCCCEEEEecccCcceeeEEcCCCC-----CeeEEEEcCCCCEEEEEeCCCeEEEccCCC-CCccE----EecCCcc
Confidence            99999999999998 4556677766554     899999999999999988 99999999996 55544    4678999


Q ss_pred             ceEEEEEcCCCCcEEEEee--cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEe--eecCCCeEEEEEccCCC
Q psy2305         160 IVSAIAINPVHPDICALGT--YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFS--GARKDCEIICWDLRNPG  235 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~~d~~i~iwd~~~~~  235 (334)
                      .|.+++|+|++..++++++  .|+.|++||+++++.+..+. +...|.+++|+|++++|++  |+ .|+.|++||+.. +
T Consensus       261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~-~dg~i~v~~~~~-~  337 (401)
T 4aez_A          261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGF-PDNNLSIWSYSS-S  337 (401)
T ss_dssp             CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECT-TTCEEEEEEEET-T
T ss_pred             eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeec-CCCcEEEEecCC-c
Confidence            9999999998875777765  79999999999999988886 6678999999999999998  65 699999999987 4


Q ss_pred             ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      ..........+...+.+++|+|++++|++++.||.|++|++.+++
T Consensus       338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          338 GLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             cceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            444433322336778899999999999999999999999999884

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.4e-37  Score=259.69  Aligned_cols=275  Identities=11%  Similarity=0.092  Sum_probs=218.2

Q ss_pred             CceeEEEEcCC---CcEEEEeeCCCeEEEEECCC-CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           2 DIEEDVDEAPD---GTCLLTNSNDNHLRTFDLPS-ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         2 d~V~~~~~sp~---~~~l~~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      +.|++++|+|+   |++|++|+.||.|++|++.+ +...              ......|...|.+++|       +|++
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--------------~~~~~~h~~~v~~~~~-------~~~~   98 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--------------PKAQQMHTGPVLDVCW-------SDDG   98 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--------------EEEEEECSSCEEEEEE-------CTTS
T ss_pred             CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--------------EEEeccccCCEEEEEE-------CcCC
Confidence            57999999999   69999999999999999987 3332              1233346788999888       6699


Q ss_pred             cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEE--cCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAF--SLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      ++|++++.||.|++||+.+++...... +..     .|.+++|  +|++++|++++ |+.|++||+++ ++...    .+
T Consensus        99 ~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~-----~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~----~~  167 (368)
T 3mmy_A           99 SKVFTASCDKTAKMWDLSSNQAIQIAQ-HDA-----PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS-SNPMM----VL  167 (368)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEE-CSS-----CEEEEEEEECSSCEEEEEEETTSEEEEECSSC-SSCSE----EE
T ss_pred             CEEEEEcCCCcEEEEEcCCCCceeecc-ccC-----ceEEEEEEeCCCCCEEEEccCCCcEEEEECCC-CcEEE----EE
Confidence            999999999999999999988776433 333     8999999  89999999887 99999999987 44444    23


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee--ccCCCCeEEEEEccCCcE----EEeeecCCCeEEE
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--KGHNGGITHLEFSSNGIL----LFSGARKDCEIIC  228 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~----l~~~~~~d~~i~i  228 (334)
                      ..+ ..+.++.+.++   .+++++.++.+++|+++........  ..+...+.++.+.++...    +++++ .|+.|++
T Consensus       168 ~~~-~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~i  242 (368)
T 3mmy_A          168 QLP-ERCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-IEGRVAI  242 (368)
T ss_dssp             ECS-SCEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-TTSEEEE
T ss_pred             ecC-CCceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec-CCCcEEE
Confidence            333 45666666654   7888899999999999876443322  223455667777665554    99999 8999999


Q ss_pred             EEccCCC--ccceeecccccC----------CceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccce
Q psy2305         229 WDLRNPG--CILHTFPRQVST----------NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK  296 (334)
Q Consensus       229 wd~~~~~--~~~~~~~~~~~~----------~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  296 (334)
                      ||++...  .....+..+...          ..+.+++|+|++++|++++.||.|++||+.++            +.+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~------------~~~~~  310 (368)
T 3mmy_A          243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR------------TKLKT  310 (368)
T ss_dssp             EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT------------EEEEE
T ss_pred             EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC------------cEEEE
Confidence            9998732  345555554321          15889999999999999999999999999987            77888


Q ss_pred             ecccccccceeeeccCCCcccceeeEEeeecceee
Q psy2305         297 FSAHQDCTNGVRWKHHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       297 ~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i  331 (334)
                      +.+|...|.+++|  +|++    ++|++++.|+..
T Consensus       311 ~~~~~~~v~~~~~--s~~g----~~l~~~s~d~~~  339 (368)
T 3mmy_A          311 SEQLDQPISACCF--NHNG----NIFAYASSYDWS  339 (368)
T ss_dssp             CCCCSSCEEEEEE--CTTS----SCEEEEECCCST
T ss_pred             ecCCCCCceEEEE--CCCC----CeEEEEeccccc
Confidence            8999999999999  9999    999999998743

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.5e-37  Score=269.32  Aligned_cols=271  Identities=15%  Similarity=0.205  Sum_probs=223.6

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      +.++.+  ++++|++|+.||+|++||+.+++..              ..+. .|...|.+++|       +|++ +|+++
T Consensus       125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~--------------~~~~-~h~~~V~~l~~-------~~~~-~l~s~  179 (464)
T 3v7d_B          125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFL--------------LQLS-GHDGGVWALKY-------AHGG-ILVSG  179 (464)
T ss_dssp             EEEEEE--ETTEEEEEETTSCEEEEETTTTEEE--------------EEEC-CCSSCEEEEEE-------CSTT-EEEEE
T ss_pred             EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEE--------------EEEe-CCCcCEEEEEE-------cCCC-EEEEE
Confidence            455555  5679999999999999999988765              3444 46788999888       5566 89999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEc--CCCCEEEEee-CCcEEEEEcCCCCCeeee-----------
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS--LDGNKIYAGF-LSEVKIFSTDRPGRECVS-----------  149 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~-----------  149 (334)
                      +.||+|++||+.+++.+..+..+..     .|.+++|+  +++++|++++ |+.|++||+.........           
T Consensus       180 s~dg~i~vwd~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  254 (464)
T 3v7d_B          180 STDRTVRVWDIKKGCCTHVFEGHNS-----TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  254 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred             eCCCCEEEEECCCCcEEEEECCCCC-----ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence            9999999999999999998887655     89999998  5778899888 999999999863221100           


Q ss_pred             -------ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecC
Q psy2305         150 -------RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARK  222 (334)
Q Consensus       150 -------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  222 (334)
                             ......+|...+.++  +++++ ++++++.||.|++||+++++.+..+.+|...|.+++|+|++++|++++ .
T Consensus       255 ~~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~  330 (464)
T 3v7d_B          255 TPEENPYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-M  330 (464)
T ss_dssp             CGGGCTTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-T
T ss_pred             ccCCCeEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-C
Confidence                   000356788888877  56677 999999999999999999999999999999999999999999999999 8


Q ss_pred             CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc
Q psy2305         223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD  302 (334)
Q Consensus       223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (334)
                      |+.|++||+++ ++.+..+..|  ...+.++.|+  +++|++++.||.|++||+.++            ...... .+..
T Consensus       331 dg~i~vwd~~~-~~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~------------~~~~~~-~~~~  392 (464)
T 3v7d_B          331 DTTIRIWDLEN-GELMYTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWDANDY------------SRKFSY-HHTN  392 (464)
T ss_dssp             TSCEEEEETTT-TEEEEEECCC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTC------------CEEEEE-ECTT
T ss_pred             CCcEEEEECCC-CcEEEEEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCC------------ceeeee-cCCC
Confidence            99999999998 7778888776  5678888886  589999999999999999986            333333 2556


Q ss_pred             ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         303 CTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       303 ~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+..++|  +|++    ++|++++ ||.+++
T Consensus       393 ~~~~~~~--~~~~----~~l~~~~-dg~i~i  416 (464)
T 3v7d_B          393 LSAITTF--YVSD----NILVSGS-ENQFNI  416 (464)
T ss_dssp             CCCEEEE--EECS----SEEEEEE-TTEEEE
T ss_pred             CccEEEE--EeCC----CEEEEec-CCeEEE
Confidence            7888899  9999    9999988 888765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-38  Score=266.40  Aligned_cols=249  Identities=16%  Similarity=0.184  Sum_probs=202.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|.+++|+|++++||+++.||.|+||++......            ....+. .|...|.+++|+|     ..++++|+
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~------------~~~~~~-~h~~~v~~~~~~~-----~~~~~~l~   73 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------------LIDTLT-GHEGPVWRVDWAH-----PKFGTILA   73 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE------------EEEEEC-CCSSCEEEEEECC-----GGGCSEEE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce------------eeeEec-CCCCcEEEEEeCC-----CCCCCEEE
Confidence            57999999999999999999999999999844322            112333 3668899999843     22389999


Q ss_pred             EeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          82 CSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +++.||.|++||+.+++  ....+..+..     .|.+++|+|+  +.+|++++ |+.|++||+.........   .+..
T Consensus        74 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~  145 (379)
T 3jrp_A           74 SCSYDGKVLIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI---IIDA  145 (379)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE---EEEC
T ss_pred             EeccCCEEEEEEcCCCceeEeeeecCCCc-----ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE---EecC
Confidence            99999999999999887  5555555443     8999999999  89999887 999999999873222222   4678


Q ss_pred             cccceEEEEEcC-------------CCCcEEEEeecCCeEEEEECCCCC----ceEeeccCCCCeEEEEEccC---CcEE
Q psy2305         157 RKNIVSAIAINP-------------VHPDICALGTYSKIIGLFSDSDGR----PLFFLKGHNGGITHLEFSSN---GILL  216 (334)
Q Consensus       157 ~~~~v~~~~~~~-------------~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~---~~~l  216 (334)
                      |...|.+++|+|             ++. ++++++.||.|++||+++++    ....+.+|...|.+++|+|+   +++|
T Consensus       146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l  224 (379)
T 3jrp_A          146 HAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL  224 (379)
T ss_dssp             CTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             CCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence            899999999999             577 99999999999999998765    34567889999999999999   8999


Q ss_pred             EeeecCCCeEEEEEccCCCcc--ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         217 FSGARKDCEIICWDLRNPGCI--LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       217 ~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      ++++ .|+.|++||++.....  ...+....+...+.+++|+|++++|++++.||.|++|++..
T Consensus       225 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          225 ASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             EEEe-CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            9999 8999999999873221  12222223466789999999999999999999999999873

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.6e-37  Score=269.25  Aligned_cols=271  Identities=15%  Similarity=0.179  Sum_probs=221.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|.+++|+|++ +|++|+.||+|++||+.+++..              ..+. .|...|.+++|.+     .+++++|+
T Consensus       163 ~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~--------------~~~~-~h~~~v~~l~~~~-----~~~~~~l~  221 (464)
T 3v7d_B          163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT--------------HVFE-GHNSTVRCLDIVE-----YKNIKYIV  221 (464)
T ss_dssp             SCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE--------------EEEC-CCSSCEEEEEEEE-----SSSCEEEE
T ss_pred             cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE--------------EEEC-CCCCccEEEEEec-----CCCCCEEE
Confidence            579999999988 8999999999999999988765              3443 4668899999865     56889999


Q ss_pred             EeeCCCcEEEEeCCCCeee-----------------------EEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEE
Q psy2305          82 CSSMYAPIHLWDSVGGEIK-----------------------ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKI  137 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i  137 (334)
                      +++.|+.|++||+.++...                       ..+..+..     .+.++  +++++++++++ |+.|++
T Consensus       222 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~--~~~~~~l~~~~~d~~i~v  294 (464)
T 3v7d_B          222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA-----SVRTV--SGHGNIVVSGSYDNTLIV  294 (464)
T ss_dssp             EEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS-----CEEEE--EEETTEEEEEETTSCEEE
T ss_pred             EEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc-----eEEEE--cCCCCEEEEEeCCCeEEE
Confidence            9999999999999876533                       22333222     55554  67889999987 999999


Q ss_pred             EEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEE
Q psy2305         138 FSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF  217 (334)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  217 (334)
                      ||+.+ ++...    .+.+|...|.+++|+|+++ ++++|+.||.|++||+++++++..+.+|...|.+++|+  +++|+
T Consensus       295 wd~~~-~~~~~----~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~  366 (464)
T 3v7d_B          295 WDVAQ-MKCLY----ILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLV  366 (464)
T ss_dssp             EETTT-TEEEE----EECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEE
T ss_pred             EECCC-CcEEE----EecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEE
Confidence            99986 55554    5778999999999999999 99999999999999999999999999999999999997  57999


Q ss_pred             eeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccce-
Q psy2305         218 SGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK-  296 (334)
Q Consensus       218 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-  296 (334)
                      +++ .|+.|++||+++ ........   ....+..++|+|+++++++++ ||.|++||+.++            +.+.. 
T Consensus       367 s~s-~dg~v~vwd~~~-~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g------------~~~~~~  428 (464)
T 3v7d_B          367 SAA-ADGSIRGWDAND-YSRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG------------KLVHAN  428 (464)
T ss_dssp             EEE-TTSEEEEEETTT-CCEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC------------CEEESC
T ss_pred             EEe-CCCcEEEEECCC-Cceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC------------cEEehh
Confidence            999 899999999987 44333332   234455577899999999998 899999999998            55554 


Q ss_pred             ecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         297 FSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       297 ~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +..|...|.+++|  + ..    .++++++.||.+.+
T Consensus       429 ~~~~~~~v~~v~~--~-~~----~l~~~~~~~g~~~i  458 (464)
T 3v7d_B          429 ILKDADQIWSVNF--K-GK----TLVAAVEKDGQSFL  458 (464)
T ss_dssp             TTTTCSEEEEEEE--E-TT----EEEEEEEETTEEEE
T ss_pred             hccCCCcEEEEEe--c-CC----EEEEEEEeCCeEEE
Confidence            6678889999999  7 34    56777778887654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.2e-37  Score=267.36  Aligned_cols=275  Identities=12%  Similarity=0.129  Sum_probs=217.3

Q ss_pred             eEEEEcCCCcEE-EEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC-CCcEEEE
Q psy2305           5 EDVDEAPDGTCL-LTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG-FTSYFLC   82 (334)
Q Consensus         5 ~~~~~sp~~~~l-~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~l~~   82 (334)
                      ..++++|+...+ ++++.||.|+||++......          ......+. .|...|.+++|       +| ++++|++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~----------~~~~~~~~-~h~~~V~~~~~-------~p~~~~~l~s   99 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRV----------DKNVPLVC-GHTAPVLDIAW-------CPHNDNVIAS   99 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC----------CTTCCCBC-CCSSCEEEEEE-------CTTCTTEEEE
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCCCC----------CCCCceEe-cCCCCEEEEEe-------CCCCCCEEEE
Confidence            457888887544 45789999999999654321          00112233 46788999888       66 8899999


Q ss_pred             eeCCCcEEEEeCCCC-------eeeEEEcCccccccccceeEEEEcCCC-CEEEEee-CCcEEEEEcCCCCCeeeeeccc
Q psy2305          83 SSMYAPIHLWDSVGG-------EIKATYRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      ++.||.|++||+.++       +.+..+..|..     .|.+++|+|++ ++|++++ |+.|++||+++ ++...    .
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~----~  169 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK-----RVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GAAVL----T  169 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSS-----CEEEEEECSSBTTEEEEEETTSCEEEEETTT-TEEEE----E
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCC-----eEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CCccE----E
Confidence            999999999999887       45667776554     89999999998 6888887 99999999996 55444    3


Q ss_pred             c--cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-ccCCCC-eEEEEEccCCcEEEee---ecCCCeE
Q psy2305         154 P--WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-KGHNGG-ITHLEFSSNGILLFSG---ARKDCEI  226 (334)
Q Consensus       154 ~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~~d~~i  226 (334)
                      +  ..|...|.+++|+|+++ +|++++.|+.|++||+++++.+..+ .+|.+. +.++.|+|++++|+++   + .|+.|
T Consensus       170 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~-~d~~i  247 (402)
T 2aq5_A          170 LGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM-SERQV  247 (402)
T ss_dssp             ECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT-CCEEE
T ss_pred             EecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC-CCceE
Confidence            4  67999999999999999 9999999999999999999998888 678776 8999999999999998   7 79999


Q ss_pred             EEEEccCCCccceeecccccCCceEEEEecCCCceEEe-eecCCcEEEEeCCCCCCCCCCCccccccccceecc--cccc
Q psy2305         227 ICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLS-GNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA--HQDC  303 (334)
Q Consensus       227 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  303 (334)
                      ++||++....++..... .....+.+++|+|++++|++ ++.||.|++||+.+++           ..+..+..  |...
T Consensus       248 ~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~-----------~~~~~l~~~~~~~~  315 (402)
T 2aq5_A          248 ALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA-----------PFLHYLSMFSSKES  315 (402)
T ss_dssp             EEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST-----------TCEEEEEEECCSSC
T ss_pred             EEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC-----------cceEeecccccCCc
Confidence            99999974443433332 23556888999999999975 5579999999999873           11344443  4588


Q ss_pred             cceeeeccCCCcccceeeEEeeec
Q psy2305         304 TNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       304 i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                      |.+++|  +|++    .++++++.
T Consensus       316 v~~~~~--sp~~----~~~~s~~~  333 (402)
T 2aq5_A          316 QRGMGY--MPKR----GLEVNKCE  333 (402)
T ss_dssp             CSEEEE--CCGG----GSCGGGTE
T ss_pred             ccceEE--eccc----ccceecce
Confidence            999999  9999    88776443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.3e-38  Score=265.31  Aligned_cols=244  Identities=14%  Similarity=0.105  Sum_probs=202.7

Q ss_pred             CceeEEEEcCC----CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC-C
Q psy2305           2 DIEEDVDEAPD----GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG-F   76 (334)
Q Consensus         2 d~V~~~~~sp~----~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~   76 (334)
                      +.|.+++|+|+    |++|++|+.||.|++||+.+++..              ..+. .|...|.+++|       +| +
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--------------~~~~-~~~~~i~~~~~-------~~~~  127 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI--------------KHYV-GHGNAINELKF-------HPRD  127 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE--------------EEEE-SCCSCEEEEEE-------CSSC
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe--------------eeec-CCCCcEEEEEE-------CCCC
Confidence            45899999998    779999999999999999988765              3444 36688999888       66 8


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCeeeEEE---cCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeec-
Q psy2305          77 TSYFLCSSMYAPIHLWDSVGGEIKATY---RPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRN-  151 (334)
Q Consensus        77 ~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-  151 (334)
                      +++|++++.||.|++||+.+++....+   ..+..     .|.+++|+|++++|++++ |+.|++||++. ++...... 
T Consensus       128 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~  201 (366)
T 3k26_A          128 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD-----EVLSADYDLLGEKIMSCGMDHSLKLWRINS-KRMMNAIKE  201 (366)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS-----CEEEEEECTTSSEEEEEETTSCEEEEESCS-HHHHHHHHH
T ss_pred             CCEEEEEeCCCeEEEEEeecCeEEEEecccccccC-----ceeEEEECCCCCEEEEecCCCCEEEEECCC-Cccccccce
Confidence            899999999999999999999988887   33333     899999999999999987 99999999985 32221000 


Q ss_pred             -----------------------ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc--------------e
Q psy2305         152 -----------------------LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP--------------L  194 (334)
Q Consensus       152 -----------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------~  194 (334)
                                             .....|...|.+++|+  ++ ++++++.|+.|++||+++++.              +
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  278 (366)
T 3k26_A          202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL  278 (366)
T ss_dssp             HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred             eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence                                   0122388999999999  55 999999999999999987654              6


Q ss_pred             EeeccCCCCeEEEEEccC--CcEEEeeecCCCeEEEEEccCCCccc----eeecccccCCceEEEEecCCCceEEeeecC
Q psy2305         195 FFLKGHNGGITHLEFSSN--GILLFSGARKDCEIICWDLRNPGCIL----HTFPRQVSTNQRVYFDLTSCSNYLLSGNTN  268 (334)
Q Consensus       195 ~~~~~~~~~i~~~~~~~~--~~~l~~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  268 (334)
                      ..+..|...|.+++|+|+  +++|++++ .||.|++||++. +++.    ..+..+.+...+.+++|+|++++|++++.|
T Consensus       279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  356 (366)
T 3k26_A          279 GRFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDD  356 (366)
T ss_dssp             EEEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCS-SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCC-CCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCC
Confidence            777889999999999999  99999999 899999999997 4433    356665556789999999999999999999


Q ss_pred             CcEEEEeCCC
Q psy2305         269 GDLSIWNVNT  278 (334)
Q Consensus       269 g~i~iwd~~~  278 (334)
                      |.|++||+.+
T Consensus       357 g~i~iwd~~~  366 (366)
T 3k26_A          357 ASIWRWDRLR  366 (366)
T ss_dssp             SEEEEEEC--
T ss_pred             CEEEEEEecC
Confidence            9999999853

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.6e-37  Score=278.24  Aligned_cols=279  Identities=15%  Similarity=0.173  Sum_probs=220.5

Q ss_pred             ceeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeee---eeceeEEEEEEecccceecCCCc
Q psy2305           3 IEEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKI---KEGGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         3 ~V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      .|.+++|+|+ +++|++++.|+.|++||+.+++..              ..+..   .|...|.+++|       + +++
T Consensus       208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--------------~~~~~~~~~~~~~v~~~~~-------~-~~~  265 (615)
T 1pgu_A          208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL--------------KYIEDDQEPVQGGIFALSW-------L-DSQ  265 (615)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE--------------EECCBTTBCCCSCEEEEEE-------S-SSS
T ss_pred             eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe--------------EEecccccccCCceEEEEE-------c-CCC
Confidence            7999999999 999999999999999999988865              34422   56688988887       7 899


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc-
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF-  156 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-  156 (334)
                      +|++++.|+.|++||+.+++.+..+..+... ....+.++.|+ ++.++++++ ++.|++||+.. ++...    .+.+ 
T Consensus       266 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~-~~~~~----~~~~~  338 (615)
T 1pgu_A          266 KFATVGADATIRVWDVTTSKCVQKWTLDKQQ-LGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH-DEVLK----TISGH  338 (615)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCTTC-GGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE-EEEEE----EECCC
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEEEcCCCCc-ccCceeEEEeC-CCCeEEEEECCCCEEEEECCC-CcEEE----EEeCC
Confidence            9999999999999999999998888765211 11267888886 888888887 99999999875 33222    1222 


Q ss_pred             --------------------------------cccceEEEEEcCC-----------------------------------
Q psy2305         157 --------------------------------RKNIVSAIAINPV-----------------------------------  169 (334)
Q Consensus       157 --------------------------------~~~~v~~~~~~~~-----------------------------------  169 (334)
                                                      |...|.+++|.+.                                   
T Consensus       339 ~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~  418 (615)
T 1pgu_A          339 NKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDG  418 (615)
T ss_dssp             SSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSS
T ss_pred             CCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCC
Confidence                                            2233333333111                                   


Q ss_pred             -------------------------------------CCcEEEEeec-CCeEEEEECCCCCce-EeeccCCCCeEEEEEc
Q psy2305         170 -------------------------------------HPDICALGTY-SKIIGLFSDSDGRPL-FFLKGHNGGITHLEFS  210 (334)
Q Consensus       170 -------------------------------------~~~~l~~~~~-dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~  210 (334)
                                                           ++ ++++++. |+.|++||+.+++.. ..+.+|...|.+++|+
T Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s  497 (615)
T 1pgu_A          419 FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQN-YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS  497 (615)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSS-EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC
T ss_pred             CEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCC-EEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC
Confidence                                                 33 4555555 666666666655443 5667799999999999


Q ss_pred             cCCcEEEeeecCCCeEEEEEccCCCccceeecc-cccCCceEEEEecC----------CCceEEeeecCCcEEEEeCCCC
Q psy2305         211 SNGILLFSGARKDCEIICWDLRNPGCILHTFPR-QVSTNQRVYFDLTS----------CSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       211 ~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      |++++|++++ .|+.|++||+.+ ++.+..+.. |  ...+.+++|+|          ++++|++++.||.|++||+.++
T Consensus       498 ~~g~~l~~~~-~dg~i~iw~~~~-~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  573 (615)
T 1pgu_A          498 PSETYIAAGD-VMGKILLYDLQS-REVKTSRWAFR--TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  573 (615)
T ss_dssp             TTSSEEEEEE-TTSCEEEEETTT-TEEEECCSCCC--SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             CCCCEEEEcC-CCCeEEEeeCCC-CcceeEeecCC--CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence            9999999999 899999999987 666666655 4  67899999999          9999999999999999999986


Q ss_pred             CCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         280 NLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .           +.+..+.+|...|++++|  +|++    + |++++.||.|++
T Consensus       574 ~-----------~~~~~~~~h~~~v~~l~~--s~~~----~-l~s~~~d~~v~i  609 (615)
T 1pgu_A          574 M-----------KIIKALNAHKDGVNNLLW--ETPS----T-LVSSGADACIKR  609 (615)
T ss_dssp             T-----------CCEEETTSSTTCEEEEEE--EETT----E-EEEEETTSCEEE
T ss_pred             c-----------eechhhhcCccceEEEEE--cCCC----C-eEEecCCceEEE
Confidence            3           466778899999999999  9999    9 999999999875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-37  Score=268.09  Aligned_cols=294  Identities=11%  Similarity=0.022  Sum_probs=221.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCC---ceeeeeCCCCCC--C------Cccee------------------
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSEL---HCKSVWRPSNQR--P------KLNYT------------------   52 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~---~~~~~~~~~~~~--~------~~~~~------------------   52 (334)
                      .++.+++|+|+|++|+++ .++.|++||+.+++   ............  +      .-...                  
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            368899999999966665 57899999999888   443332211100  0      00000                  


Q ss_pred             -------------eeeeeceeEEEEEEecccceecCCCcEE-EEeeCCCcEEEEeCC--CCeeeEEEcCcccccccccee
Q psy2305          53 -------------LKIKEGGIIYDYVWYPKTSSIDGFTSYF-LCSSMYAPIHLWDSV--GGEIKATYRPYNQVDEVTHAY  116 (334)
Q Consensus        53 -------------~~~~~~~~v~~~~~~~~~~~~s~~~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~  116 (334)
                                   -...+...|.+++|       +|++++| ++++.||.|++||+.  +++.+..+..+.+..   .|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~v~  153 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRL-------TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSK---RPN  153 (450)
T ss_dssp             ----------------CCCCCEEEEEE-------CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSS---CEE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEE-------cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCC---Cce
Confidence                         00012335777776       7799996 889999999999998  888887776433322   799


Q ss_pred             EEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC---CCcEEEEeecCCeEEEEECCCCC
Q psy2305         117 SLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV---HPDICALGTYSKIIGLFSDSDGR  192 (334)
Q Consensus       117 ~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~  192 (334)
                      +++|+|++++|++++ ++.+++|++.. +.........+.+|...|++++|+|+   ++ +|++++.|+.|++||+++++
T Consensus       154 ~~~~sp~~~~l~~~~~~g~v~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~  231 (450)
T 2vdu_B          154 AISIAEDDTTVIIADKFGDVYSIDINS-IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCF  231 (450)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTS-CCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTT
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCC-cccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCc
Confidence            999999999999987 89999999986 33221000046789999999999999   88 99999999999999999998


Q ss_pred             ceEe-eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccc-----------------------ccCC
Q psy2305         193 PLFF-LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ-----------------------VSTN  248 (334)
Q Consensus       193 ~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------------------~~~~  248 (334)
                      .+.. +.+|...|.+++|+ ++++|++++ .|+.|++||+++ ++.+..+..+                       ....
T Consensus       232 ~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (450)
T 2vdu_B          232 IVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF  308 (450)
T ss_dssp             CEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred             eeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence            8877 56899999999999 999999999 899999999998 6666655422                       1234


Q ss_pred             ceEEEEecCCCceEEeee-cCCcEEEEeC--CCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEee
Q psy2305         249 QRVYFDLTSCSNYLLSGN-TNGDLSIWNV--NTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       249 ~~~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~  325 (334)
                      .+..+.|+|++++|++++ .++.|++|++  ..+...         +.+..+..| +.|.+++|  +|++    .+++++
T Consensus       309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l---------~~~~~~~~~-~~v~~~~~--~~~~----~~v~~~  372 (450)
T 2vdu_B          309 AVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDL---------ALKQIITFP-YNVISLSA--HNDE----FQVTLD  372 (450)
T ss_dssp             CEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCE---------EEEEEEECS-SCEEEEEE--ETTE----EEEEEC
T ss_pred             EEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCce---------eeccEeccC-CceEEEEe--cCCc----EEEEEe
Confidence            578899999999999998 8999999999  443221         455667777 78999999  9966    555555


Q ss_pred             ec
Q psy2305         326 SG  327 (334)
Q Consensus       326 ~~  327 (334)
                      +.
T Consensus       373 ~~  374 (450)
T 2vdu_B          373 NK  374 (450)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3e-37  Score=278.70  Aligned_cols=275  Identities=11%  Similarity=0.101  Sum_probs=230.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCC----CceeeeeCCCCCCCCcceeeeeeecee-EEEEEEecccceecC-
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSE----LHCKSVWRPSNQRPKLNYTLKIKEGGI-IYDYVWYPKTSSIDG-   75 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~s~-   75 (334)
                      +.|.+++|+|+|++||+++ ++.|++|++.++    +..              ..+.. |... |.+++|       +| 
T Consensus        19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~--------------~~~~~-h~~~~v~~~~~-------sp~   75 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPV--------------VQFTG-HGSSVVTTVKF-------SPI   75 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSE--------------EEECT-TTTSCEEEEEE-------CSS
T ss_pred             CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccc--------------eEEec-CCCceEEEEEE-------CcC
Confidence            4688999999999999998 789999999977    443              34443 5567 988888       78 


Q ss_pred             -CCcEEEEeeCCCcEEEEeCCCC--------eeeEEEcCccccccccceeEEEEcCCCCEEEEee-C----CcEEEEEcC
Q psy2305          76 -FTSYFLCSSMYAPIHLWDSVGG--------EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L----SEVKIFSTD  141 (334)
Q Consensus        76 -~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~  141 (334)
                       ++++|++++.||.|++||+.++        +....+..+..     .|.+++|+|++++|++++ +    +.|.+||. 
T Consensus        76 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-  149 (615)
T 1pgu_A           76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG-----PISDISWDFEGRRLCVVGEGRDNFGVFISWDS-  149 (615)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS-----CEEEEEECTTSSEEEEEECCSSCSEEEEETTT-
T ss_pred             CCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc-----cEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-
Confidence             9999999999999999999755        55566665444     899999999999999886 4    58888883 


Q ss_pred             CCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCC---CeEEEEEccC-CcEEE
Q psy2305         142 RPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNG---GITHLEFSSN-GILLF  217 (334)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~l~  217 (334)
                        ++...    .+.+|...|.+++|+|+++.++++++.|+.|++||+++++.+..+.+|..   .|.+++|+|+ +++|+
T Consensus       150 --~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  223 (615)
T 1pgu_A          150 --GNSLG----EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI  223 (615)
T ss_dssp             --CCEEE----ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred             --CCcce----eeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEE
Confidence              44444    57789999999999999976799999999999999999999999999999   9999999999 99999


Q ss_pred             eeecCCCeEEEEEccCCCccceeeccc--ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccc
Q psy2305         218 SGARKDCEIICWDLRNPGCILHTFPRQ--VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY  295 (334)
Q Consensus       218 ~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  295 (334)
                      +++ .|+.|++||+++ ++.+..+...  .+...+.+++|+ ++++|++++.|+.|++||+.++            +.+.
T Consensus       224 ~~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~------------~~~~  288 (615)
T 1pgu_A          224 TVG-SDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS------------KCVQ  288 (615)
T ss_dssp             EEE-TTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT------------EEEE
T ss_pred             EEe-CCCeEEEEECCC-CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC------------cEEE
Confidence            999 899999999987 6666666210  236788999999 9999999999999999999987            5666


Q ss_pred             eeccc----ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         296 KFSAH----QDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       296 ~~~~~----~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+..+    ...+..+.|  . ++    .+|++++.||.+++
T Consensus       289 ~~~~~~~~~~~~~~~~~~--~-~~----~~l~~~~~~g~i~~  323 (615)
T 1pgu_A          289 KWTLDKQQLGNQQVGVVA--T-GN----GRIISLSLDGTLNF  323 (615)
T ss_dssp             EEECCTTCGGGCEEEEEE--E-ET----TEEEEEETTSCEEE
T ss_pred             EEcCCCCcccCceeEEEe--C-CC----CeEEEEECCCCEEE
Confidence            66655    356778888  6 77    89999999998865

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.2e-36  Score=262.83  Aligned_cols=264  Identities=16%  Similarity=0.228  Sum_probs=215.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|.+++|+  +++|++|+.||+|++||+.+++..              ..+. .|...|.++.|         +++.++
T Consensus       160 ~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~--------------~~~~-~h~~~v~~~~~---------~~~~l~  213 (445)
T 2ovr_B          160 GGVWSSQMR--DNIIISGSTDRTLKVWNAETGECI--------------HTLY-GHTSTVRCMHL---------HEKRVV  213 (445)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEE--------------EEEC-CCSSCEEEEEE---------ETTEEE
T ss_pred             CCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEE--------------EEEC-CCCCcEEEEEe---------cCCEEE
Confidence            356667765  446777777777777777666544              2333 35567877777         456799


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.||.|++||+.+++.+..+..+..     .|.+++|  +++++++++ |+.|++||+++ +....    .+.+|...
T Consensus       214 s~s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~----~~~~~~~~  281 (445)
T 2ovr_B          214 SGSRDATLRVWDIETGQCLHVLMGHVA-----AVRCVQY--DGRRVVSGAYDFMVKVWDPET-ETCLH----TLQGHTNR  281 (445)
T ss_dssp             EEETTSEEEEEESSSCCEEEEEECCSS-----CEEEEEE--CSSCEEEEETTSCEEEEEGGG-TEEEE----EECCCSSC
T ss_pred             EEeCCCEEEEEECCCCcEEEEEcCCcc-----cEEEEEE--CCCEEEEEcCCCEEEEEECCC-CcEeE----EecCCCCc
Confidence            999999999999999988888876554     8899998  678888887 99999999986 44444    56789999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      |.++.|  ++. ++++++.|+.|++||+++++.+..+.+|...+.++.++  +++|++++ .||.|++||+++ ++.+..
T Consensus       282 v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~~-~~~~~~  354 (445)
T 2ovr_B          282 VYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIKT-GQCLQT  354 (445)
T ss_dssp             EEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETTT-CCEEEE
T ss_pred             eEEEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECCC-CcEEEE
Confidence            999999  666 99999999999999999999999999999999888874  66999999 899999999987 677777


Q ss_pred             ecccc-cCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee-----cccccccceeeeccCCC
Q psy2305         241 FPRQV-STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF-----SAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       241 ~~~~~-~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~s~~  314 (334)
                      +..+. +...+.+++|+  +++|++++.||.|++||+.++            +.+..+     ..|.+.|++++|  +|+
T Consensus       355 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~------------~~~~~~~~~~~~~~~~~v~~~~~--s~~  418 (445)
T 2ovr_B          355 LQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG------------EFIRNLVTLESGGSGGVVWRIRA--SNT  418 (445)
T ss_dssp             ECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC------------CEEEEEEECTTGGGTCEEEEEEE--CSS
T ss_pred             EccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCC------------ceeeeeeccccCCCCceEEEEEe--cCC
Confidence            76532 46678888885  689999999999999999998            555555     467889999999  999


Q ss_pred             cccceeeEEeeeccee
Q psy2305         315 ERDLLVADATCSGQIT  330 (334)
Q Consensus       315 ~~~~~~~l~t~~~d~~  330 (334)
                      +    .+||+++.||+
T Consensus       419 ~----~~la~~~~dg~  430 (445)
T 2ovr_B          419 K----LVCAVGSRNGT  430 (445)
T ss_dssp             E----EEEEEECSSSS
T ss_pred             E----EEEEEcccCCC
Confidence            9    99999999997

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-37  Score=286.72  Aligned_cols=203  Identities=10%  Similarity=0.105  Sum_probs=169.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|+|++++||+|+.||+|+||+..+.+..                ....+...|.+++|       +| +++|+
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~----------------~~~~~~~~V~~l~f-------sp-g~~L~   73 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV----------------IKLEDRSAIKEMRF-------VK-GIYLV   73 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE----------------EECSSCCCEEEEEE-------ET-TTEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE----------------EEcCCCCCEEEEEE-------cC-CCEEE
Confidence            57999999999999999999999999998766543                22235678988887       67 77999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeee-eec------cc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECV-SRN------LK  153 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~-~~~------~~  153 (334)
                      +++.|++|++||+.+++.+..+.. ..     .|++++|+|++++|++|+ ||.|++||++. +.... ..+      ..
T Consensus        74 S~s~D~~v~lWd~~~~~~~~~~~~-~~-----~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~-~~~~~~~i~~~~~~~~~  146 (902)
T 2oaj_A           74 VINAKDTVYVLSLYSQKVLTTVFV-PG-----KITSIDTDASLDWMLIGLQNGSMIVYDIDR-DQLSSFKLDNLQKSSFF  146 (902)
T ss_dssp             EEETTCEEEEEETTTCSEEEEEEC-SS-----CEEEEECCTTCSEEEEEETTSCEEEEETTT-TEEEEEEECCHHHHHTC
T ss_pred             EEECcCeEEEEECCCCcEEEEEcC-CC-----CEEEEEECCCCCEEEEEcCCCcEEEEECCC-Cccccceeccccccccc
Confidence            999999999999999988887752 22     799999999999999998 99999999986 33221 000      13


Q ss_pred             ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC------------------CCCeEEEEEccCCcE
Q psy2305         154 PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH------------------NGGITHLEFSSNGIL  215 (334)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~  215 (334)
                      ..+|...|.+++|+|++...+++|+.||.| +||+++++.+..+..|                  ...|.+++|+|+|++
T Consensus       147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~  225 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH  225 (902)
T ss_dssp             SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred             cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence            467889999999999753389999999999 9999999888887655                  477999999999999


Q ss_pred             EEeeecCCCeEEEEEccCCCccc
Q psy2305         216 LFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       216 l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      |++++ .|+.|++||+++ ++++
T Consensus       226 lasgs-~Dg~i~lWd~~~-g~~~  246 (902)
T 2oaj_A          226 IITIH-EDNSLVFWDANS-GHMI  246 (902)
T ss_dssp             EEEEE-TTCCEEEEETTT-CCEE
T ss_pred             EEEEE-CCCeEEEEECCC-CcEE
Confidence            99999 899999999987 5544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-37  Score=265.77  Aligned_cols=293  Identities=13%  Similarity=0.017  Sum_probs=210.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCcee-------eeeC---CCCCC-----CCcceeeeeeeceeEEEEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCK-------SVWR---PSNQR-----PKLNYTLKIKEGGIIYDYVW   66 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~-------~~~~---~~~~~-----~~~~~~~~~~~~~~v~~~~~   66 (334)
                      +.|.+++|||||+++|+++.|++|+  |....+...       .+.+   .....     ......+...+...|.+++|
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vaw   93 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKP   93 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEE
Confidence            5689999999999999999999998  655444221       0000   00000     01111222223566777777


Q ss_pred             ecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCC
Q psy2305          67 YPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGR  145 (334)
Q Consensus        67 ~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~  145 (334)
                             ||+|++||+++.||.|++||.+.  ++..+. +...-....+.+++|||||++|++|+ ||+|++||+.. +.
T Consensus        94 -------SPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~-~~  162 (588)
T 2j04_A           94 -------SPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK-NS  162 (588)
T ss_dssp             -------CSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC-CT
T ss_pred             -------CCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC-Cc
Confidence                   77999999999999999999644  555555 33211112599999999999999998 99999999986 33


Q ss_pred             e-------eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc---eEee-ccCCCCeEEEEEccCCc
Q psy2305         146 E-------CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP---LFFL-KGHNGGITHLEFSSNGI  214 (334)
Q Consensus       146 ~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~i~~~~~~~~~~  214 (334)
                      .       +........+|...|.+++|+|+|   +++++.|+.|++||+..++.   .+++ .+|...|.+++|+  |+
T Consensus       163 l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~  237 (588)
T 2j04_A          163 ENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY  237 (588)
T ss_dssp             TTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred             cccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence            1       222111236788999999999998   77788899999999987763   3556 4788899999999  68


Q ss_pred             EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEe--cCCCceEEeeecCCcEEEEeCCCCCCCCCCCcc----
Q psy2305         215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDL--TSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEE----  288 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----  288 (334)
                      .|++++  +++|++||+.. +.......+|  ...+..++|  +|++..|+++++||+ ++|....-  .++|+..    
T Consensus       238 ~LASa~--~~tIkLWd~~~-~~~~~~~~gh--~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~--~~spd~~l~a~  309 (588)
T 2j04_A          238 KVVLTC--PGYVHKIDLKN-YSISSLKTGS--LENFHIIPLNHEKESTILLMSNKTSY-KVLLEDEL--HVTADNIIAPY  309 (588)
T ss_dssp             EEEEEC--SSEEEEEETTT-TEEEEEECSC--CSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSE--EEECCCSSHHH
T ss_pred             EEEEEe--CCeEEEEECCC-CeEEEEEcCC--CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccE--EECCCceEEEE
Confidence            898887  69999999986 4432222244  667788999  999999999999999 99997632  1334332    


Q ss_pred             -----ccc----cccceecccccccceeeeccCCCcccceeeEEeeec
Q psy2305         289 -----SVQ----EPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       289 -----~~~----~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                           ..|    ..+..+.+ ...|.+++|  +|||    +.+|+++.
T Consensus       310 ~d~~v~lW~~~g~~l~~~~~-~~~I~~va~--SPdG----~~lA~~~~  350 (588)
T 2j04_A          310 LEKKFKKWSTIWNEFNNYET-TLVIHGISL--SPDG----YSIAIVYD  350 (588)
T ss_dssp             HHHHHHHTTTTTTSSSSSCC-EEEEEEEEE--CTTS----SEEEEEEE
T ss_pred             cCCEEEEEECCCCceeeecc-ceEEEEEEE--CCCC----CEEEEEEe
Confidence                 011    22333333 557999999  9999    99999876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.1e-38  Score=305.53  Aligned_cols=275  Identities=19%  Similarity=0.189  Sum_probs=235.1

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|.+++|+|+++++++|+.+|.|++|++.+++..              ..+. .|...|.+++|       +|++++|++
T Consensus       963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~--------------~~~~-~h~~~v~~l~~-------s~dg~~l~s 1020 (1249)
T 3sfz_A          963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF--------------SSGV-GHKKAVRHIQF-------TADGKTLIS 1020 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE--------------EECC-CCSSCCCCEEE-------CSSSSCEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee--------------eecc-cCCCceEEEEE-------CCCCCEEEE
Confidence            5889999999999999999999999999988765              2333 45677877776       779999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      ++.||.|++||+.+++... +..+..     .|.+++|+|++.+++.+.|+.|++||+.+ ++...    .+.+|...|.
T Consensus      1021 ~~~dg~i~vwd~~~~~~~~-~~~~~~-----~v~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~----~~~~~~~~v~ 1089 (1249)
T 3sfz_A         1021 SSEDSVIQVWNWQTGDYVF-LQAHQE-----TVKDFRLLQDSRLLSWSFDGTVKVWNVIT-GRIER----DFTCHQGTVL 1089 (1249)
T ss_dssp             ECSSSBEEEEETTTTEEEC-CBCCSS-----CEEEEEECSSSEEEEEESSSEEEEEETTT-TCCCE----EEECCSSCCC
T ss_pred             EcCCCEEEEEECCCCceEE-EecCCC-----cEEEEEEcCCCcEEEEECCCcEEEEECCC-CceeE----EEcccCCcEE
Confidence            9999999999999987663 223222     89999999987655555599999999987 55544    5778999999


Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeec
Q psy2305         163 AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP  242 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~  242 (334)
                      +++|+|+++ ++++++.|+.|++||+.+++++..+.+|.+.|.+++|+|+|++|++++ .||.|++||+.+ ++.+..+.
T Consensus      1090 ~~~~s~d~~-~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~-~dg~i~vwd~~~-~~~~~~~~ 1166 (1249)
T 3sfz_A         1090 SCAISSDAT-KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGD-DNGEIRIWNVSD-GQLLHSCA 1166 (1249)
T ss_dssp             CEEECSSSS-SCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEE-TTSCCCEEESSS-SCCCCCCC
T ss_pred             EEEECCCCC-EEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEe-CCCEEEEEECCC-CceEEEec
Confidence            999999999 999999999999999999999999999999999999999999999999 899999999997 55554431


Q ss_pred             -------ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         243 -------RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       243 -------~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                             ...+...+.+++|+|+|++|++++  |.|++||+.++            +.+..+..|...|.+++|  +|++
T Consensus      1167 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g------------~~~~~~~~~~~~i~~~~~--s~dg 1230 (1249)
T 3sfz_A         1167 PISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG------------DSSQTFYTNGTNLKKIHV--SPDF 1230 (1249)
T ss_dssp             CCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSC------------BCCCCCCCSSCCCCCCEE--CSSS
T ss_pred             cccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCC------------ceeeeeeccCCcccEEEE--CCCC
Confidence                   012356788999999999999885  89999999998            667788888999999999  9999


Q ss_pred             ccceeeEEeeecceeeee
Q psy2305         316 RDLLVADATCSGQITNVK  333 (334)
Q Consensus       316 ~~~~~~l~t~~~d~~i~~  333 (334)
                          ++|++++.||.+++
T Consensus      1231 ----~~l~~~~~dg~v~v 1244 (1249)
T 3sfz_A         1231 ----RTYVTVDNLGILYI 1244 (1249)
T ss_dssp             ----CCEEEECTTCCEEE
T ss_pred             ----CEEEEecCCcEEEE
Confidence                99999999999875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.2e-37  Score=258.87  Aligned_cols=251  Identities=13%  Similarity=0.134  Sum_probs=206.1

Q ss_pred             CceeEEEEcCC---CcEEEEeeCCCeEEEEECCCCC-ceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           2 DIEEDVDEAPD---GTCLLTNSNDNHLRTFDLPSEL-HCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         2 d~V~~~~~sp~---~~~l~~~~~d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      ++|.+++|+|+   |++|++++.||.|++||+.+++ ..              ..+. .|...|.+++|.+ .++|+|++
T Consensus        66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------~~~~-~~~~~v~~~~~~~-~~~~s~~~  129 (357)
T 3i2n_A           66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPV--------------YSVK-GHKEIINAIDGIG-GLGIGEGA  129 (357)
T ss_dssp             SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCS--------------EEEC-CCSSCEEEEEEES-GGGCC-CC
T ss_pred             CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccE--------------EEEE-ecccceEEEeecc-ccccCCCc
Confidence            47999999998   6999999999999999999877 33              2343 4668899999975 36789999


Q ss_pred             cEEEEeeCCCcEEEEeCCCCe-eeEEEcCccccccccceeEEE----EcCCCCEEEEee-CCcEEEEEcCCCCCeeeeec
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGE-IKATYRPYNQVDEVTHAYSLA----FSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~  151 (334)
                      ++|++++.|+.|++||+.+++ ....+..+.... ...+.+++    |+|++++|++++ |+.|++||++. ++. .   
T Consensus       130 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~-~---  203 (357)
T 3i2n_A          130 PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN-KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MAL-R---  203 (357)
T ss_dssp             CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSC-CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT-TEE-E---
T ss_pred             cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCC-CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc-Cce-e---
Confidence            999999999999999999886 667776533211 12688888    788999999988 89999999996 333 2   


Q ss_pred             ccccccccceEEEEEcC---CCCcEEEEeecCCeEEEEECCCCCceEeec-----cCCCCeEEEEEccCCc-EEEeeecC
Q psy2305         152 LKPWFRKNIVSAIAINP---VHPDICALGTYSKIIGLFSDSDGRPLFFLK-----GHNGGITHLEFSSNGI-LLFSGARK  222 (334)
Q Consensus       152 ~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~-~l~~~~~~  222 (334)
                       ....|...|.+++|+|   ++. ++++++.||.|++||+++++....+.     +|...|.+++|+|+++ +|++++ .
T Consensus       204 -~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~  280 (357)
T 3i2n_A          204 -WETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG-G  280 (357)
T ss_dssp             -EEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE-T
T ss_pred             -eecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe-C
Confidence             3467889999999999   888 99999999999999998876665554     8999999999999998 899999 8


Q ss_pred             CCeEEEEEccCCCc------------------cceeecccccCCceEEEEecCCCceEE-eeecCCcEEEEeCCCC
Q psy2305         223 DCEIICWDLRNPGC------------------ILHTFPRQVSTNQRVYFDLTSCSNYLL-SGNTNGDLSIWNVNTS  279 (334)
Q Consensus       223 d~~i~iwd~~~~~~------------------~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~  279 (334)
                      |+.|++||++....                  .+..+..|  ...+.+++|+|++++|+ +++.||.|++||+.+.
T Consensus       281 dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          281 AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             CCcEEEeecCCCcccccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            99999999986322                  23444444  66789999999999998 7999999999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-38  Score=269.97  Aligned_cols=242  Identities=12%  Similarity=0.143  Sum_probs=194.2

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCC--eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGG--EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS  133 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~  133 (334)
                      +.+.|++++|       +|++++|++++.|+.|++||+.++  +....+..|..     .|.+++|+|++++|++++ |+
T Consensus        10 ~~~~v~~~~~-------s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~s~~~~~l~s~s~d~   77 (377)
T 3dwl_C           10 LPKPSYEHAF-------NSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDK-----IVTCVDWAPKSNRIVTCSQDR   77 (377)
T ss_dssp             CSSCCSCCEE-------CSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSS-----CEEEEEECTTTCCEEEEETTS
T ss_pred             CCCcEEEEEE-------CCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCc-----eEEEEEEeCCCCEEEEEeCCC
Confidence            4456766666       779999999999999999999888  56666665544     899999999999999988 99


Q ss_pred             cEEEEEcCCCC--CeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC---ceEeecc-CCCCeEEE
Q psy2305         134 EVKIFSTDRPG--RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR---PLFFLKG-HNGGITHL  207 (334)
Q Consensus       134 ~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~-~~~~i~~~  207 (334)
                      .|++||+....  ....    .+..|...|.+++|+|+++ +|++++.|+.|++||+++++   ....+.+ |...|.++
T Consensus        78 ~v~vwd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~  152 (377)
T 3dwl_C           78 NAYVYEKRPDGTWKQTL----VLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL  152 (377)
T ss_dssp             SEEEC------CCCCEE----ECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred             eEEEEEcCCCCceeeee----EecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence            99999998632  0222    4678999999999999999 99999999999999998876   4777777 99999999


Q ss_pred             EEccCCcEEEeeecCCCeEEEEEccCC-----------------CccceeecccccCCceEEEEecCCCceEEeeecCCc
Q psy2305         208 EFSSNGILLFSGARKDCEIICWDLRNP-----------------GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGD  270 (334)
Q Consensus       208 ~~~~~~~~l~~~~~~d~~i~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~  270 (334)
                      +|+|++++|++++ .|+.|++||++..                 +.++..+ .  +...+.+++|+|++++|++++.||.
T Consensus       153 ~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~sp~~~~l~~~~~d~~  228 (377)
T 3dwl_C          153 DWHPNNVLLAAGC-ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P--SGGWVHAVGFSPSGNALAYAGHDSS  228 (377)
T ss_dssp             EECTTSSEEEEEE-SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C--CSSSEEEEEECTTSSCEEEEETTTE
T ss_pred             EEcCCCCEEEEEe-CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c--CCceEEEEEECCCCCEEEEEeCCCc
Confidence            9999999999999 8999999999631                 2233333 3  4677899999999999999999999


Q ss_pred             EEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         271 LSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       271 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |++||+.+++..        ...+..+.+|...|.+++|  +|++    ++|++++.|+.+..
T Consensus       229 i~iwd~~~~~~~--------~~~~~~~~~~~~~v~~~~~--s~~~----~~l~~~~~~~~~~~  277 (377)
T 3dwl_C          229 VTIAYPSAPEQP--------PRALITVKLSQLPLRSLLW--ANES----AIVAAGYNYSPILL  277 (377)
T ss_dssp             EC-CEECSTTSC--------EEECCCEECSSSCEEEEEE--EETT----EEEEEESSSSEEEE
T ss_pred             EEEEECCCCCCc--------ceeeEeecCCCCceEEEEE--cCCC----CEEEEEcCCcEEEE
Confidence            999999997321        0127788899999999999  9999    99999998887753

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=7.3e-38  Score=264.80  Aligned_cols=249  Identities=15%  Similarity=0.131  Sum_probs=187.5

Q ss_pred             CceeEEEEcCCCcEEEEe-----------eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEeccc
Q psy2305           2 DIEEDVDEAPDGTCLLTN-----------SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT   70 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~-----------~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   70 (334)
                      +.|.+++++  ++.+++|           +.|+.+++|++...............      .....+...+..++     
T Consensus        74 ~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~-----  140 (365)
T 4h5i_A           74 DSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDF------DASTNADDYTKLVY-----  140 (365)
T ss_dssp             CCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECS------SCCCCTTCCEEEEE-----
T ss_pred             CceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeece------eecCCcccCEEEEE-----
Confidence            345666554  4455554           45788999998765432100000000      00001122344444     


Q ss_pred             ceecCCCcEEEEe--eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeee
Q psy2305          71 SSIDGFTSYFLCS--SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECV  148 (334)
Q Consensus        71 ~~~s~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~  148 (334)
                        |||||++++++  +.|++|+|||+++++.+..+.. ..     .|.+++|+|||++|++++++.+.+|+..+ +....
T Consensus       141 --fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~-~~-----~V~~v~fspdg~~l~s~s~~~~~~~~~~~-~~~~~  211 (365)
T 4h5i_A          141 --ISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET-RG-----EVKDLHFSTDGKVVAYITGSSLEVISTVT-GSCIA  211 (365)
T ss_dssp             --ECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC-SS-----CCCEEEECTTSSEEEEECSSCEEEEETTT-CCEEE
T ss_pred             --EcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC-CC-----ceEEEEEccCCceEEeccceeEEEEEecc-Cccee
Confidence              48899997654  4789999999999999888753 22     79999999999999999977888888876 44333


Q ss_pred             eecccccccccceEEEEEcCCCCcEEEEeecCC----eEEEEECCCCCc----eEeeccCCCCeEEEEEccCCcEEEeee
Q psy2305         149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSK----IIGLFSDSDGRP----LFFLKGHNGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~  220 (334)
                      ..  ....|...|.+++|+|+++ .+++++.++    .+++|++.....    ...+.+|...|++++|+|+|++|++|+
T Consensus       212 ~~--~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          212 RK--TDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             EE--CCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             ee--ecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence            21  4567888999999999999 999998887    688999876543    345678999999999999999999999


Q ss_pred             cCCCeEEEEEccCCCccceee-cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         221 RKDCEIICWDLRNPGCILHTF-PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       221 ~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                       .|++|+|||+++ ++++..+ .+|  ...|.+++|+|||++|++++.|++|+|||+...
T Consensus       289 -~D~~V~iwd~~~-~~~~~~~~~gH--~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          289 -NDNSIALVKLKD-LSMSKIFKQAH--SFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             -TTSCEEEEETTT-TEEEEEETTSS--SSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             -CCCEEEEEECCC-CcEEEEecCcc--cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence             899999999998 7777665 455  678999999999999999999999999999754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-36  Score=255.35  Aligned_cols=263  Identities=11%  Similarity=0.076  Sum_probs=196.7

Q ss_pred             cCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcE
Q psy2305          10 APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPI   89 (334)
Q Consensus        10 sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i   89 (334)
                      .+++.+|++|+.||+|++||+.+++..              ..+.   ...|.       .+.++|+   +++++.|++|
T Consensus        45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~--------------~~~~---~~~v~-------~~~~~~~---~~s~s~D~~i   97 (343)
T 3lrv_A           45 YYDKWVCMCRCEDGALHFTQLKDSKTI--------------TTIT---TPNPR-------TGGEHPA---IISRGPCNRL   97 (343)
T ss_dssp             SEEEEEEEEEEETTEEEEEEESSSSCE--------------EEEE---EECCC-------TTCCCCS---EEEECSTTEE
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCcEE--------------EEEe---cCCce-------eeeeCCc---eEEecCCCeE
Confidence            357889999999999999999988765              2232   23343       3455666   8999999999


Q ss_pred             EEEeCC---------CCeeeEEEcCccccccccceeEEEEcC--CCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          90 HLWDSV---------GGEIKATYRPYNQVDEVTHAYSLAFSL--DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        90 ~iwd~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      ++|+..         +++.+..+.. .+.   ..|.+++|+|  +++++++++ |+.|++||+++ ++....   ....+
T Consensus        98 ~~w~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~---~~~~~  169 (343)
T 3lrv_A           98 LLLYPGNQITILDSKTNKVLREIEV-DSA---NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED-DSQYIV---HSAKS  169 (343)
T ss_dssp             EEEETTTEEEEEETTTCCEEEEEEC-CCS---SCEEEEECCC---CCEEEEEETTCCEEEEESSS-SCEEEE---ECCCS
T ss_pred             EEEEccCceEEeecCCcceeEEeec-CCC---CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEE---EecCC
Confidence            999765         4443433331 121   2799999999  999999888 99999999997 444332   22445


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce-Eeecc-CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL-FFLKG-HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG  235 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~  235 (334)
                      ...+.+++|+|++. +|++|+.||.|++||+++++.+ ..+.. |.++|.+++|+|++.+|++++ .+ .|++||++. .
T Consensus       170 ~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-~v~iwd~~~-~  245 (343)
T 3lrv_A          170 DVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-TVVCFDLRK-D  245 (343)
T ss_dssp             SCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS-BEEEEETTS-S
T ss_pred             CCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEEcCC-C
Confidence            66899999999999 9999999999999999999887 78888 999999999999999999999 55 999999997 4


Q ss_pred             ccceeecc---cccCCceEEEEecCCCceEEeeec-CCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeecc
Q psy2305         236 CILHTFPR---QVSTNQRVYFDLTSCSNYLLSGNT-NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKH  311 (334)
Q Consensus       236 ~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  311 (334)
                      .....+..   +.......+++|+|+|++|++++. |+.+++|++....            .....    ..+..++|  
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~------------~~~~~----~~~~~~~~--  307 (343)
T 3lrv_A          246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT------------KNWTK----DEESALCL--  307 (343)
T ss_dssp             TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT------------CSEEE----EEEEECCC--
T ss_pred             CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc------------cceEe----cCceeEec--
Confidence            44444332   211111146899999999999988 9999999997752            11111    45677778  


Q ss_pred             CC---CcccceeeEEeeecceeeee
Q psy2305         312 HK---FERDLLVADATCSGQITNVK  333 (334)
Q Consensus       312 s~---~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .|   +.    +.|++++.||.+.+
T Consensus       308 ~~~~~~~----~~l~~~~~d~~~~~  328 (343)
T 3lrv_A          308 QSDTADF----TDMDVVCGDGGIAA  328 (343)
T ss_dssp             ----CCC----CEEEEEEETTEEEE
T ss_pred             Ccccccc----ceeEEEecCCceEE
Confidence            77   66    77888888877653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.1e-36  Score=261.16  Aligned_cols=258  Identities=19%  Similarity=0.307  Sum_probs=220.2

Q ss_pred             EcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCc
Q psy2305           9 EAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAP   88 (334)
Q Consensus         9 ~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~   88 (334)
                      ++++|++|++|+.||+|++||+.+++..              ..+. .|...|.+++|         ++++|++++.||.
T Consensus       125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~--------------~~~~-~h~~~v~~~~~---------~~~~l~s~~~dg~  180 (445)
T 2ovr_B          125 LQFCGNRIVSGSDDNTLKVWSAVTGKCL--------------RTLV-GHTGGVWSSQM---------RDNIIISGSTDRT  180 (445)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTCCEE--------------EECC-CCSSCEEEEEE---------ETTEEEEEETTSC
T ss_pred             EEEcCCEEEEEECCCcEEEEECCCCcEE--------------EEEc-CCCCCEEEEEe---------cCCEEEEEeCCCe
Confidence            5557899999999999999999988865              3444 46678988888         3568999999999


Q ss_pred             EEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEc
Q psy2305          89 IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN  167 (334)
Q Consensus        89 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (334)
                      |++||+.+++.+..+..+..     .|.+++|+  ++.+++++ |+.|++||+.+ ++...    .+.+|...+.++++ 
T Consensus       181 i~vwd~~~~~~~~~~~~h~~-----~v~~~~~~--~~~l~s~s~dg~i~~wd~~~-~~~~~----~~~~~~~~v~~~~~-  247 (445)
T 2ovr_B          181 LKVWNAETGECIHTLYGHTS-----TVRCMHLH--EKRVVSGSRDATLRVWDIET-GQCLH----VLMGHVAAVRCVQY-  247 (445)
T ss_dssp             EEEEETTTTEEEEEECCCSS-----CEEEEEEE--TTEEEEEETTSEEEEEESSS-CCEEE----EEECCSSCEEEEEE-
T ss_pred             EEEEECCcCcEEEEECCCCC-----cEEEEEec--CCEEEEEeCCCEEEEEECCC-CcEEE----EEcCCcccEEEEEE-
Confidence            99999999999998887655     89999996  56788887 99999999996 55554    56789999999999 


Q ss_pred             CCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccC
Q psy2305         168 PVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST  247 (334)
Q Consensus       168 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  247 (334)
                       ++. ++++++.||.|++||+++++.+..+.+|...|.+++|  ++.++++++ .|+.|++||+++ ++.+..+..+  .
T Consensus       248 -~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~-~~~~~~~~~~--~  319 (445)
T 2ovr_B          248 -DGR-RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVET-GNCIHTLTGH--Q  319 (445)
T ss_dssp             -CSS-CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETTT-CCEEEEECCC--C
T ss_pred             -CCC-EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECCC-CCEEEEEcCC--c
Confidence             566 8999999999999999999999999999999999999  788999999 899999999998 7777777765  4


Q ss_pred             CceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc---cccccceeeeccCCCcccceeeEEe
Q psy2305         248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA---HQDCTNGVRWKHHKFERDLLVADAT  324 (334)
Q Consensus       248 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~s~~~~~~~~~l~t  324 (334)
                      ..+.++.+  +++++++++.||.|++||+.++            +.+..+..   |...|.+++|  +  +    ++|++
T Consensus       320 ~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~v~~~~~--~--~----~~l~s  377 (445)
T 2ovr_B          320 SLTSGMEL--KDNILVSGNADSTVKIWDIKTG------------QCLQTLQGPNKHQSAVTCLQF--N--K----NFVIT  377 (445)
T ss_dssp             SCEEEEEE--ETTEEEEEETTSCEEEEETTTC------------CEEEEECSTTSCSSCEEEEEE--C--S----SEEEE
T ss_pred             ccEEEEEE--eCCEEEEEeCCCeEEEEECCCC------------cEEEEEccCCCCCCCEEEEEE--C--C----CEEEE
Confidence            45666654  5779999999999999999987            56666665   7788999999  4  6    78999


Q ss_pred             eecceeeee
Q psy2305         325 CSGQITNVK  333 (334)
Q Consensus       325 ~~~d~~i~~  333 (334)
                      ++.||.|++
T Consensus       378 ~~~dg~v~i  386 (445)
T 2ovr_B          378 SSDDGTVKL  386 (445)
T ss_dssp             EETTSEEEE
T ss_pred             EeCCCeEEE
Confidence            999999875

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.7e-36  Score=262.36  Aligned_cols=310  Identities=15%  Similarity=0.203  Sum_probs=229.6

Q ss_pred             ceeEEEEcCCC----------cEEEEeeC----CCeEEEEECCCCCceee------------eeCCCCCCCCcceeeeee
Q psy2305           3 IEEDVDEAPDG----------TCLLTNSN----DNHLRTFDLPSELHCKS------------VWRPSNQRPKLNYTLKIK   56 (334)
Q Consensus         3 ~V~~~~~sp~~----------~~l~~~~~----d~~v~iw~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~   56 (334)
                      +..++.|.|+.          .++++|+.    .+.|.++++.-......            +.......+.+.......
T Consensus        47 p~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  126 (430)
T 2xyi_A           47 PSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKIN  126 (430)
T ss_dssp             CCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEEE
T ss_pred             CceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEEc
Confidence            45788899865          46777764    45788876541100000            000001112233344455


Q ss_pred             eceeEEEEEEecccceecCC-CcEEEEeeCCCcEEEEeCCC----------CeeeEEEcCccccccccceeEEEEcCCCC
Q psy2305          57 EGGIIYDYVWYPKTSSIDGF-TSYFLCSSMYAPIHLWDSVG----------GEIKATYRPYNQVDEVTHAYSLAFSLDGN  125 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~-~~~l~~~~~d~~i~iwd~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  125 (334)
                      |.+.|++++|       +|+ +++|++++.||.|++|++.+          .+....+..|..     .|++++|+|++.
T Consensus       127 h~~~v~~l~~-------~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~  194 (430)
T 2xyi_A          127 HEGEVNRARY-------MPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-----EGYGLSWNPNLN  194 (430)
T ss_dssp             ESSCCSEEEE-------ETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-----CCCCEEECTTST
T ss_pred             CCCcEEEEEE-------CCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-----CeEEEEeCCCCC
Confidence            6778888777       555 67899999999999999976          456666766554     899999999998


Q ss_pred             -EEEEee-CCcEEEEEcCCCCCe--eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC---CceEeec
Q psy2305         126 -KIYAGF-LSEVKIFSTDRPGRE--CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG---RPLFFLK  198 (334)
Q Consensus       126 -~l~~~~-d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~  198 (334)
                       +|++++ ||.|++|++......  .......+..|...|.+++|+|++..+|++++.||.|++||++++   +.+..+.
T Consensus       195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~  274 (430)
T 2xyi_A          195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD  274 (430)
T ss_dssp             TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred             CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence             888887 999999999862221  111011456899999999999954449999999999999999987   5777888


Q ss_pred             cCCCCeEEEEEccCCc-EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCc-eEEeeecCCcEEEEeC
Q psy2305         199 GHNGGITHLEFSSNGI-LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNV  276 (334)
Q Consensus       199 ~~~~~i~~~~~~~~~~-~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~  276 (334)
                      .|...|++++|+|+++ +|++++ .|+.|++||++....++..+..|  ...+.+++|+|+++ +|++++.||.|++||+
T Consensus       275 ~~~~~v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~  351 (430)
T 2xyi_A          275 AHTAEVNCLSFNPYSEFILATGS-ADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILASSGTDRRLHVWDL  351 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSCSEEEECC--SSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred             cCCCCeEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence            8999999999999987 688999 89999999999756667777766  67899999999995 6889999999999999


Q ss_pred             CCCCCCCCCC--ccccccccceecccccccceeeeccCCCccccee-eEEeeecceeeee
Q psy2305         277 NTSNLPSSPY--EESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV-ADATCSGQITNVK  333 (334)
Q Consensus       277 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~-~l~t~~~d~~i~~  333 (334)
                      ........+.  .+...+.+..+.+|...|.+++|  +|++    + +|++++.||.|++
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~p~~----~~~l~s~s~dg~i~i  405 (430)
T 2xyi_A          352 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW--NPNE----PWIICSVSEDNIMQV  405 (430)
T ss_dssp             GGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE--CSSS----TTEEEEEETTSEEEE
T ss_pred             CCCccccCccccccCCcceEEEcCCCCCCceEEEE--CCCC----CCEEEEEECCCCEEE
Confidence            8743211100  00112566777889999999999  9999    8 8999999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.5e-36  Score=258.91  Aligned_cols=244  Identities=16%  Similarity=0.212  Sum_probs=203.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++|+|+|+|++||+|+.||.|+|||+.+++..              ..+. .|...+.++.|         ++.+|+
T Consensus       148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~--------------~~~~-~h~~~v~~~s~---------~~~~l~  203 (420)
T 4gga_A          148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--------------RNMT-SHSARVGSLSW---------NSYILS  203 (420)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--------------EEEC-CCSSCEEEEEE---------ETTEEE
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE--------------EEEe-CCCCceEEEee---------CCCEEE
Confidence            46999999999999999999999999999998865              3444 35677877766         677999


Q ss_pred             EeeCCCcEEEEeCCCCe-eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGE-IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +++.|+.+++||..... .+..+..+..     .+..+.|+|+++++++++ |+.+++|+......... .......|..
T Consensus       204 sgs~d~~i~~~d~~~~~~~~~~~~~h~~-----~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-~~~~~~~~~~  277 (420)
T 4gga_A          204 SGSRSGHIHHHDVRVAEHHVATLSGHSQ-----EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQG  277 (420)
T ss_dssp             EEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-CSEEECCCSS
T ss_pred             EEeCCCceeEeeecccceeeEEeccccc-----ceeeeeecCCCCeeeeeeccccceEEeeccccccce-eeeeecccCC
Confidence            99999999999987643 4566666554     899999999999999987 99999999986322111 1114567889


Q ss_pred             ceEEEEEcCCCCcEEEE--eecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec-CCCeEEEEEccCCCc
Q psy2305         160 IVSAIAINPVHPDICAL--GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR-KDCEIICWDLRNPGC  236 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d~~i~iwd~~~~~~  236 (334)
                      .|.+++|+|.+..++++  |+.|++|++||++++++...+..| ..+.++.|+|+++.+++++. .|+.|++||+.+ ++
T Consensus       278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~-~~  355 (420)
T 4gga_A          278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MA  355 (420)
T ss_dssp             CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CC
T ss_pred             ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCC-Cc
Confidence            99999999988767766  457999999999999998888754 57889999999998877541 589999999998 78


Q ss_pred             cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ++..+.+|  ...|.+++|+|+|++|++|+.|++|+|||+...
T Consensus       356 ~v~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          356 KVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             EEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             EEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            88888887  678999999999999999999999999999876

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.2e-36  Score=276.84  Aligned_cols=243  Identities=21%  Similarity=0.299  Sum_probs=196.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++|+|+|++|++|+.|++|+|||+.++...              ..+. .|...|.+++|       +|++++|+
T Consensus       431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~--------------~~~~-~h~~~v~~~~~-------s~~~~~l~  488 (694)
T 3dm0_A          431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--------------RRFV-GHTKDVLSVAF-------SLDNRQIV  488 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--------------EEEE-CCSSCEEEEEE-------CTTSSCEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcce--------------eEEe-CCCCCEEEEEE-------eCCCCEEE
Confidence            46899999999999999999999999999988765              3444 46678988888       67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC--CEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG--NKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      +++.|++|++||............  ...+...|.+++|+|++  ..|++++ |+.|++||++. .+...    .+.+|.
T Consensus       489 s~s~D~~i~iwd~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~----~~~~h~  561 (694)
T 3dm0_A          489 SASRDRTIKLWNTLGECKYTISEG--GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-CKLRS----TLAGHT  561 (694)
T ss_dssp             EEETTSCEEEECTTSCEEEEECSS--TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-CCEEE----EECCCS
T ss_pred             EEeCCCEEEEEECCCCcceeeccC--CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC-CcEEE----EEcCCC
Confidence            999999999999865443332221  11122279999999987  5788887 99999999986 44444    578899


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      ..|++++|+|+++ +|++|+.||.|++||+++++.+..+. +...|.+++|+|++.+|++++  ++.|++||+++ +..+
T Consensus       562 ~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~-~~~~  636 (694)
T 3dm0_A          562 GYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT--EHGIKIWDLES-KSIV  636 (694)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE--TTEEEEEETTT-TEEE
T ss_pred             CCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCC-CCCh
Confidence            9999999999999 99999999999999999999888876 456799999999998888776  67799999987 5555


Q ss_pred             eeecccc-----------------cCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         239 HTFPRQV-----------------STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       239 ~~~~~~~-----------------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      ..+..+.                 ....+.+++|+|+|++|++|+.||.|++|++..
T Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          637 EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             EEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             hhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence            5443221                 112367899999999999999999999999863

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.7e-37  Score=284.77  Aligned_cols=305  Identities=7%  Similarity=0.048  Sum_probs=208.0

Q ss_pred             CceeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCC---cceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           2 DIEEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPK---LNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         2 d~V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      .+|.+++|+|+ +..|++|+.||.| +||+.+++....+.........   .......+|...|.+++|       +|+|
T Consensus       152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f-------spdg  223 (902)
T 2oaj_A          152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY-------HPNS  223 (902)
T ss_dssp             CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE-------CTTS
T ss_pred             CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE-------cCCC
Confidence            46899999996 5789999999999 9999988765433221000000   000011234567888888       6799


Q ss_pred             cEEEEeeCCCcEEEEeCCCCeeeEE--Ec---Cccc-----c---ccccceeEEEEc----CCC-CEEEEee-C-----C
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGEIKAT--YR---PYNQ-----V---DEVTHAYSLAFS----LDG-NKIYAGF-L-----S  133 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~~~~~--~~---~~~~-----~---~~~~~v~~~~~~----~~~-~~l~~~~-d-----~  133 (334)
                      ++|++++.|+.|++||+.+++.+..  +.   .+..     .   .+...|++++|+    |++ .+|++|+ +     .
T Consensus       224 ~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~  303 (902)
T 2oaj_A          224 LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQ  303 (902)
T ss_dssp             SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCC
T ss_pred             CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCc
Confidence            9999999999999999999887653  21   1110     0   012268888885    443 3455553 3     2


Q ss_pred             cEEEEEc-----------------------------------------------------------------------CC
Q psy2305         134 EVKIFST-----------------------------------------------------------------------DR  142 (334)
Q Consensus       134 ~i~i~d~-----------------------------------------------------------------------~~  142 (334)
                      .+.+|++                                                                       .+
T Consensus       304 ~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~  383 (902)
T 2oaj_A          304 SLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS  383 (902)
T ss_dssp             CEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred             eEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC
Confidence            5555552                                                                       11


Q ss_pred             CCCeeeee---cccccccccceE----------------------------------EEEEcCCCCcEEEEeecCCeEEE
Q psy2305         143 PGRECVSR---NLKPWFRKNIVS----------------------------------AIAINPVHPDICALGTYSKIIGL  185 (334)
Q Consensus       143 ~~~~~~~~---~~~~~~~~~~v~----------------------------------~~~~~~~~~~~l~~~~~dg~i~i  185 (334)
                       +......   ...+..|...|+                                  .++|+|+++ +|++|+.|++|++
T Consensus       384 -g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~-~laSgs~DgtVrl  461 (902)
T 2oaj_A          384 -GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT-AFITGHSNGSVRI  461 (902)
T ss_dssp             -CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE-EEEEEETTSEEEE
T ss_pred             -CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc-EEEEecCCCcEEE
Confidence             1110000   000112223344                                  445578888 9999999999999


Q ss_pred             EECCCCCce--Eee----c-----cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC-------------------
Q psy2305         186 FSDSDGRPL--FFL----K-----GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG-------------------  235 (334)
Q Consensus       186 ~d~~~~~~~--~~~----~-----~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~-------------------  235 (334)
                      ||+.++...  ..+    .     +|...|.+++|+|+|++|++|+ .|++|++||+....                   
T Consensus       462 Wd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs-~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~  540 (902)
T 2oaj_A          462 YDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI-ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRR  540 (902)
T ss_dssp             EESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE-TTSCEEEEEEEECCC---------------CCS
T ss_pred             EECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe-cCcEEEEEEecCccccCccccCCCcccceeeee
Confidence            999887432  111    1     7889999999999999999999 89999999998631                   


Q ss_pred             -------------------------ccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccc
Q psy2305         236 -------------------------CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESV  290 (334)
Q Consensus       236 -------------------------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  290 (334)
                                               +++..+.+|  ...+.+++|||+| +||+|+.|++|++||+++......      
T Consensus       541 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h--~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~------  611 (902)
T 2oaj_A          541 FSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN--KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYM------  611 (902)
T ss_dssp             CCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC--SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEE------
T ss_pred             ccccCCccccccccccCCCCCCCccceeEEEEcC--CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEE------
Confidence                                     123444444  6789999999999 999999999999999987521000      


Q ss_pred             ccccceec-ccccccceeeeccC-----CC---cccceeeEEeeecceeeee
Q psy2305         291 QEPLYKFS-AHQDCTNGVRWKHH-----KF---ERDLLVADATCSGQITNVK  333 (334)
Q Consensus       291 ~~~~~~~~-~~~~~i~~~~~~~s-----~~---~~~~~~~l~t~~~d~~i~~  333 (334)
                       ..+..+. +|.+.|++++|  +     ||   +    ++|++++.|++|++
T Consensus       612 -~~~~~~~~gh~~~V~sv~F--s~~~~~~Dg~~~----~~l~sgs~D~tv~~  656 (902)
T 2oaj_A          612 -ENIREISGAQSACVTCIEF--VIMEYGDDGYSS----ILMVCGTDMGEVIT  656 (902)
T ss_dssp             -EEGGGTCSSCCCCEEEEEE--EEEECTTSSSEE----EEEEEEETTSEEEE
T ss_pred             -eehhHhccccccceEEEEE--EEEecCCCCCcc----eEEEEEecCCcEEE
Confidence             0113454 89999999999  9     76   6    79999999999875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.8e-37  Score=262.51  Aligned_cols=254  Identities=16%  Similarity=0.163  Sum_probs=204.2

Q ss_pred             CceeEEEEcCC----C---cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeee----ceeEEEEEEeccc
Q psy2305           2 DIEEDVDEAPD----G---TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKE----GGIIYDYVWYPKT   70 (334)
Q Consensus         2 d~V~~~~~sp~----~---~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~   70 (334)
                      .+|.+++|+|+    +   ++|++++.||.|++|++.+++...         ......+..+.    ...|.+++|++..
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK---------KVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC---------CEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccc---------cccceeecccccccCCCcEEEEEEeecc
Confidence            46899999999    9   999999999999999998877400         00012444332    5789998884100


Q ss_pred             ceecCCCcE-EEEeeCCCcEEEEeCCC------CeeeE-----EEcC-----ccccccccceeEEEEcCCCCEEEEee-C
Q psy2305          71 SSIDGFTSY-FLCSSMYAPIHLWDSVG------GEIKA-----TYRP-----YNQVDEVTHAYSLAFSLDGNKIYAGF-L  132 (334)
Q Consensus        71 ~~~s~~~~~-l~~~~~d~~i~iwd~~~------~~~~~-----~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~-d  132 (334)
                         .|++++ |++++.||.|++||+.+      ++.+.     .+..     ..+..   .|.+++|+|++ +|++++ |
T Consensus       134 ---~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~-~l~~~~~d  206 (397)
T 1sq9_A          134 ---DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ---FATSVDISERG-LIATGFNN  206 (397)
T ss_dssp             -------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCC---CCCEEEECTTS-EEEEECTT
T ss_pred             ---CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCC---CceEEEECCCc-eEEEEeCC
Confidence               068999 99999999999999987      65554     5532     12222   79999999999 888887 9


Q ss_pred             CcEEEEEcCCCCCeeeeecccccc---c---ccceEEEEEcCCCCcEEEEeecC---CeEEEEECCCCCceEeecc----
Q psy2305         133 SEVKIFSTDRPGRECVSRNLKPWF---R---KNIVSAIAINPVHPDICALGTYS---KIIGLFSDSDGRPLFFLKG----  199 (334)
Q Consensus       133 ~~i~i~d~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~----  199 (334)
                      +.|++||+++ ++...    .+..   |   ...|.+++|+|+++ +|++++.|   +.|++||+++++.+..+.+    
T Consensus       207 g~i~i~d~~~-~~~~~----~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~  280 (397)
T 1sq9_A          207 GTVQISELST-LRPLY----NFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS  280 (397)
T ss_dssp             SEEEEEETTT-TEEEE----EEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred             CcEEEEECCC-CceeE----EEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCCcccceeccCccc
Confidence            9999999986 44444    4556   8   89999999999999 99999999   9999999999999999988    


Q ss_pred             ---------CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeec------cc-------------ccCCceE
Q psy2305         200 ---------HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP------RQ-------------VSTNQRV  251 (334)
Q Consensus       200 ---------~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~------~~-------------~~~~~~~  251 (334)
                               |...|.+++|+|++++|++++ .|+.|++||+++ ++.+..+.      .+             .+...+.
T Consensus       281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~  358 (397)
T 1sq9_A          281 SQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF  358 (397)
T ss_dssp             -----CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEE
T ss_pred             ccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCC-CceeEEEecccCcccchhhhhccccccccccCCcee
Confidence                     999999999999999999999 899999999998 67677776      33             0156789


Q ss_pred             EEEecCCC----------ceEEeeecCCcEEEEeCCCC
Q psy2305         252 YFDLTSCS----------NYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       252 ~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~  279 (334)
                      +++|+|++          ++|++++.||.|++|++.++
T Consensus       359 ~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          359 DVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             EEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             EEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            99999998          79999999999999999875

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-36  Score=258.65  Aligned_cols=243  Identities=11%  Similarity=0.091  Sum_probs=204.5

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|.+++|+|++++|++++.||.|++|+ .+++..              ..+. .|...|.+++|       +|++++|++
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~--------------~~~~-~~~~~v~~~~~-------~~~~~~l~~  166 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALL--------------NVLN-FHRAPIVSVKW-------NKDGTHIIS  166 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEE--------------EEEC-CCCSCEEEEEE-------CTTSSEEEE
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCee--------------eecc-CCCccEEEEEE-------CCCCCEEEE
Confidence            799999999999999999999999999 444433              2333 35678988888       669999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCcccc---------------------------------------------------cc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQV---------------------------------------------------DE  111 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------------------------------------------~~  111 (334)
                      ++.|+.|++||+.+++.+..+..+...                                                   .+
T Consensus       167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~  246 (425)
T 1r5m_A          167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH  246 (425)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCC
T ss_pred             EecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccC
Confidence            999999999999888776655433221                                                   12


Q ss_pred             ccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC
Q psy2305         112 VTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD  190 (334)
Q Consensus       112 ~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  190 (334)
                      ...|.+++|+|++++|++++ |+.|++||++. ++...    .+..|...+.+++|+|++  ++++++.|+.|++||+++
T Consensus       247 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~----~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~  319 (425)
T 1r5m_A          247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQN----CFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ  319 (425)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSE----EECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTT
T ss_pred             CCceEEEEECCCCCEEEEEcCCCEEEEEECCC-Cccce----EecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCC
Confidence            33789999999999999888 99999999986 44444    467789999999999998  788999999999999999


Q ss_pred             CCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc--------------------cceeecccccCCce
Q psy2305         191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC--------------------ILHTFPRQVSTNQR  250 (334)
Q Consensus       191 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~--------------------~~~~~~~~~~~~~~  250 (334)
                      ++.+..+..|...|.+++|+|++++|++++ .|+.|++||++. ..                    .+..+..+.....+
T Consensus       320 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  397 (425)
T 1r5m_A          320 NTLLALSIVDGVPIFAGRISQDGQKYAVAF-MDGQVNVYDLKK-LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI  397 (425)
T ss_dssp             TEEEEEEECTTCCEEEEEECTTSSEEEEEE-TTSCEEEEECHH-HHC--------------CEECCEEEEECCTTCCCCE
T ss_pred             CcEeEecccCCccEEEEEEcCCCCEEEEEE-CCCeEEEEECCC-CccceeeeecccccccCcccchhhhhhcCcccCCce
Confidence            999999999999999999999999999999 899999999987 44                    56666655222289


Q ss_pred             EEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305         251 VYFDLTSCSNYLLSGNTNGDLSIWNVN  277 (334)
Q Consensus       251 ~~~~~s~~~~~l~~~~~dg~i~iwd~~  277 (334)
                      .+++|+|++++|++++.||.|++|+++
T Consensus       398 ~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          398 FDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEEEccCCCceEEEEecCceEEEEeec
Confidence            999999999999999999999999986

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=9.4e-36  Score=251.06  Aligned_cols=281  Identities=11%  Similarity=0.125  Sum_probs=205.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE-
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF-   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l-   80 (334)
                      +.|++++|+|||++||+|+.++ ++||++.+.+..                ..... ..+..+++       .++++.+ 
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~----------------~~~~~-~~~~~~~~-------~~~~~~~~   74 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI----------------MSQEM-RHLSKVRM-------LHRTNYVA   74 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE----------------EEEEC-SCCCEEEE-------CTTSSEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCE-EEEEecCCccee----------------eeeec-CCeEEEEE-------cCCCCEEE
Confidence            5799999999999999998775 789998876543                11111 23444444       5566666 


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      ++++.|+.|++||+.+++.+..+....      .|.+++|+++  .++++.++.|++||+....+.+.    .+..   +
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~~~~------~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~----~~~~---~  139 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIKVDA------PVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRIT----DDIR---F  139 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEECSS------CEEEEEECSS--EEEEEETTEEEEEESSTTCCBSS----CCEE---E
T ss_pred             EEECCccEEEEEECCCCcEEEEEECCC------ceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeE----Eecc---C
Confidence            567788999999999999988876322      7999999986  45666789999999997323333    2222   4


Q ss_pred             eEEEEEcCCCCcEEEE--eecCCeEEEEECCCCC----------------ceEeeccCCCCeEEEEEccCCcEEEeeecC
Q psy2305         161 VSAIAINPVHPDICAL--GTYSKIIGLFSDSDGR----------------PLFFLKGHNGGITHLEFSSNGILLFSGARK  222 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~  222 (334)
                      ...+++++  . ++++  |+.+|.|++||+++++                .+..+.+|.+.|.+++|+|+|++|++++ .
T Consensus       140 ~~~~~~s~--~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~  215 (355)
T 3vu4_A          140 GGVCEFSN--G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-Q  215 (355)
T ss_dssp             EEEEEEET--T-EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred             CceEEEEc--c-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-C
Confidence            44566777  3 5665  6899999999998765                2778899999999999999999999999 8


Q ss_pred             CCe-EEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCC---------cccccc
Q psy2305         223 DCE-IICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPY---------EESVQE  292 (334)
Q Consensus       223 d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~  292 (334)
                      |++ |++||+++ ++.+..+....+...+.+++|+|++++|++++.|++|++||+..........         ....+.
T Consensus       216 d~~~v~iwd~~~-~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (355)
T 3vu4_A          216 DGTIIRVFKTED-GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWS  294 (355)
T ss_dssp             TCSEEEEEETTT-CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSC
T ss_pred             CCCEEEEEECCC-CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccc
Confidence            998 99999998 7777777632136789999999999999999999999999998753210000         000000


Q ss_pred             c-ccee-cccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         293 P-LYKF-SAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       293 ~-~~~~-~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      . ...+ ..+......++|  +|++    ++|++++.||.+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~a~--~~d~----~~l~~~~~dg~~~~  331 (355)
T 3vu4_A          295 LCNFKLSVDKHVRGCKIAW--ISES----SLVVVWPHTRMIET  331 (355)
T ss_dssp             SEEEECCCCTTCCCCEEEE--SSSS----EEEEEETTTTEEEE
T ss_pred             eeEEEeccCCCCCceEEEE--eCCC----CEEEEEeCCCeEEE
Confidence            0 0001 111223467899  9999    99999999998764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=6.4e-37  Score=261.74  Aligned_cols=299  Identities=10%  Similarity=0.044  Sum_probs=202.2

Q ss_pred             eeEEEEc---CCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEeccc----------
Q psy2305           4 EEDVDEA---PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT----------   70 (334)
Q Consensus         4 V~~~~~s---p~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------   70 (334)
                      ..++.|.   |++..|++++.++.|++|+........      .............+...+..+.|.+..          
T Consensus        18 p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (393)
T 4gq1_A           18 PYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPG------STGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGD   91 (393)
T ss_dssp             EEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSS------CCSEEEEEEEEEECSSCEEEEEECTTCEEECC-----
T ss_pred             CeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCccc------ccccceeeeEEEecCCCeeeEeecCCccccccccCCC
Confidence            4566774   444445555568889999864332110      000001122223344556666665422          


Q ss_pred             ---ceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC--------CCCEEEEee-CCcEEEE
Q psy2305          71 ---SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL--------DGNKIYAGF-LSEVKIF  138 (334)
Q Consensus        71 ---~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~-d~~i~i~  138 (334)
                         ..+++++++|++++.|++|++||+.+++............+...|++++|+|        |+++|++++ |++|++|
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence               2345677789999999999999998887643221111111222899999998        789999998 9999999


Q ss_pred             EcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee---------------------
Q psy2305         139 STDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL---------------------  197 (334)
Q Consensus       139 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------------------  197 (334)
                      |+.+ +....    ....|...+.+++|+|++.++|++++.|++|++||+++++.....                     
T Consensus       172 d~~~-~~~~~----~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          172 RLTD-EGPIL----AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             EEET-TEEEE----EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             ECCC-Cceee----eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence            9986 44444    467888999999999998658999999999999999877543221                     


Q ss_pred             ----ccCCCCeEEEEEc-cCCcEEEeeecCCCeEEEEEccCCCccceeeccccc----------------CCceEEEEec
Q psy2305         198 ----KGHNGGITHLEFS-SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS----------------TNQRVYFDLT  256 (334)
Q Consensus       198 ----~~~~~~i~~~~~~-~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------------~~~~~~~~~s  256 (334)
                          .+|...+.++.|+ |+++.|++++ .|+++++||+.. +.....+..+..                ........++
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s-~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDGSGILAMC-KSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH  324 (393)
T ss_dssp             -----CCSSSCSEEEEETTTTCEEEEEC-TTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred             eeecccccccceeeeeecCCCCEEEEEe-CCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence                3567778889986 7999999999 899999999986 433333322211                0111112233


Q ss_pred             C--CCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         257 S--CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       257 ~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |  ++.++++|+.||.|++||+.++            +....+..|...|.+++|  +|||    ++||++++||.+.+
T Consensus       325 ~~~~~~~~~sgs~Dg~V~lwd~~~~------------~~~~~~~~~~~~V~svaf--spdG----~~LA~as~~Gv~lv  385 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGLIQLINTYEK------------DSNSIPIQLGMPIVDFCW--HQDG----SHLAIATEGSVLLT  385 (393)
T ss_dssp             SSCTTEEEEEETTTTEEEEEETTCT------------TCCEEEEECSSCEEEEEE--CTTS----SEEEEEESSEEEEE
T ss_pred             cCCCCEEEEEECCCCEEEEEECCCC------------cEEEEecCCCCcEEEEEE--cCCC----CEEEEEeCCCeEEE
Confidence            3  4557788889999999999998            566677788889999999  9999    99999999998754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.7e-36  Score=255.77  Aligned_cols=239  Identities=12%  Similarity=0.021  Sum_probs=195.1

Q ss_pred             CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeee--eceeEEEEEEecccceecCCCc
Q psy2305           2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK--EGGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      +.|.+++|+| ++++|++++.|+.|++||+.+....               .+..+  +...|.+++|       +|+++
T Consensus       119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---------------~~~~~~~~~~~v~~~~~-------~~~~~  176 (383)
T 3ei3_B          119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQ---------------VFAKTDSWDYWYCCVDV-------SVSRQ  176 (383)
T ss_dssp             CBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEE---------------EEECCCCSSCCEEEEEE-------ETTTT
T ss_pred             CceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceE---------------EEeccCCCCCCeEEEEE-------CCCCC
Confidence            4799999999 7899999999999999999864332               33322  2366888887       66999


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCC--Ceeeeecccc
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPG--RECVSRNLKP  154 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~--~~~~~~~~~~  154 (334)
                      +|++++.|+.|++||+ +++.+..+..+..     .|.+++|+|+++ +|++++ |+.|++||+++..  ....    ..
T Consensus       177 ~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~  246 (383)
T 3ei3_B          177 MLATGDSTGRLLLLGL-DGHEIFKEKLHKA-----KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI----AE  246 (383)
T ss_dssp             EEEEEETTSEEEEEET-TSCEEEEEECSSS-----CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE----EE
T ss_pred             EEEEECCCCCEEEEEC-CCCEEEEeccCCC-----cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE----EE
Confidence            9999999999999998 5777777776554     899999999998 888887 9999999998622  1222    23


Q ss_pred             cccccceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEeeccCC-----------------CCeEEEEEccCCcEE
Q psy2305         155 WFRKNIVSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-----------------GGITHLEFSSNGILL  216 (334)
Q Consensus       155 ~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------~~i~~~~~~~~~~~l  216 (334)
                      .+|...|.+++|+| ++. +|++++.|+.|++||+++++....+.+|.                 +.+..++|+|++++ 
T Consensus       247 ~~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-  324 (383)
T 3ei3_B          247 MPHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-  324 (383)
T ss_dssp             EECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred             ecCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-
Confidence            37899999999999 998 99999999999999999988777766443                 34555777788877 


Q ss_pred             EeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         217 FSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       217 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                       +++ .|+.|++||+.+ ++.+..+..+.+...+..++|+|++++|++++ |+.|++||+++
T Consensus       325 -s~s-~d~~i~iwd~~~-~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          325 -LLN-DKRTIDIYDANS-GGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             -CTT-CCCCEEEEETTT-CCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             -ccC-CCCeEEEEecCC-CceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence             777 899999999998 77788887755456666779999999999997 99999999875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-36  Score=278.70  Aligned_cols=250  Identities=16%  Similarity=0.184  Sum_probs=202.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|++++|+|+|++|++|+.||.|+||++.++...            ....+. .|...|.+++|+|     ..++++|+
T Consensus        10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~------------~~~~l~-~h~~~V~~l~~s~-----~~~~~~l~   71 (753)
T 3jro_A           10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------------LIDTLT-GHEGPVWRVDWAH-----PKFGTILA   71 (753)
T ss_dssp             CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE------------EEEEEC-CCSSCEEEEEECC-----TTSCSEEE
T ss_pred             ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc------------cceecc-CCcCceEEEEecC-----CCCCCEEE
Confidence            57999999999999999999999999999854322            112333 3668899999844     22389999


Q ss_pred             EeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCC--CCEEEEee-CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          82 CSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +++.||.|++||+.+++  ....+..+..     .|.+++|+|+  ++.+++++ ||.|++||++........   ...+
T Consensus        72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~-----~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~---~~~~  143 (753)
T 3jro_A           72 SCSYDGKVLIWKEENGRWSQIAVHAVHSA-----SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI---IIDA  143 (753)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE---EEEC
T ss_pred             EEeCCCeEEEEECCCCcccccccccCCCC-----CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee---Eeec
Confidence            99999999999999887  4555555444     8999999999  99999988 999999999873222222   4678


Q ss_pred             cccceEEEEEcC-------------CCCcEEEEeecCCeEEEEECCCC----CceEeeccCCCCeEEEEEccC---CcEE
Q psy2305         157 RKNIVSAIAINP-------------VHPDICALGTYSKIIGLFSDSDG----RPLFFLKGHNGGITHLEFSSN---GILL  216 (334)
Q Consensus       157 ~~~~v~~~~~~~-------------~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~---~~~l  216 (334)
                      |...|.+++|+|             ++. ++++|+.||.|++||++++    .....+.+|...|.+++|+|+   +++|
T Consensus       144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l  222 (753)
T 3jro_A          144 HAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL  222 (753)
T ss_dssp             CSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             CCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEE
Confidence            999999999999             477 9999999999999999877    455677889999999999999   8999


Q ss_pred             EeeecCCCeEEEEEccCCCccc--eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         217 FSGARKDCEIICWDLRNPGCIL--HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       217 ~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ++++ .||.|++||++......  .......+...+.+++|+|+|++|++++.||.|++|++..+
T Consensus       223 ~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          223 ASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             EEEE-SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             EEEe-cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            9999 89999999998732111  11122223567888999999999999999999999999854

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-37  Score=271.94  Aligned_cols=233  Identities=9%  Similarity=0.050  Sum_probs=180.0

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeee----EEEcCccccccccceeEEEEcCC------CCEEEEee-CCcEEEEEcCC
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIK----ATYRPYNQVDEVTHAYSLAFSLD------GNKIYAGF-LSEVKIFSTDR  142 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~-d~~i~i~d~~~  142 (334)
                      +|+++.|++++.|++|+|||+.+++..    ..+..+..     .|.+++|+|+      +.+|++++ ||+|++||+..
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~-----~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~  244 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFG-----EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIID  244 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCEEEEEEEEECCC-----SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCC
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCC-----cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCC
Confidence            344556666778999999999776642    22332222     7999999997      57899887 99999999986


Q ss_pred             CCCe------eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEE--EEccCC
Q psy2305         143 PGRE------CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHL--EFSSNG  213 (334)
Q Consensus       143 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~--~~~~~~  213 (334)
                      ....      .......+.+|...|++++|+|++  .|++|+.||+|++||++++ .+...+.+|...|.++  .|+|++
T Consensus       245 ~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g  322 (524)
T 2j04_B          245 NATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE  322 (524)
T ss_dssp             CSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS
T ss_pred             CccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC
Confidence            3211      000001456789999999999864  8999999999999999876 4556788999999999  578888


Q ss_pred             -cEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccc
Q psy2305         214 -ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQE  292 (334)
Q Consensus       214 -~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  292 (334)
                       ++|++++ .|++|+|||+++ .+....+.++.....+.+++|+|+++.+++++.|++|++||++++            .
T Consensus       323 ~~~laS~S-~D~tvklWD~~~-~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~------------~  388 (524)
T 2j04_B          323 DTVVSTVA-VDGYFYIFNPKD-IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA------------F  388 (524)
T ss_dssp             CCEEEEEE-TTSEEEEECGGG-HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT------------T
T ss_pred             CeEEEEec-cCCeEEEEECCC-CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc------------c
Confidence             8999999 899999999997 666666666543345678899999999999999999999999987            5


Q ss_pred             ccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         293 PLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       293 ~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+..+.+|.+.|++++|  +|++    ++|++|+.||+|++
T Consensus       389 ~~~~l~gH~~~V~sva~--Sp~g----~~l~Sgs~Dgtv~l  423 (524)
T 2j04_B          389 AVHPLVSRETTITAIGV--SRLH----PMVLAGSADGSLII  423 (524)
T ss_dssp             CCEEEEECSSCEEEEEC--CSSC----CBCEEEETTTEEEC
T ss_pred             cceeeecCCCceEEEEe--CCCC----CeEEEEECCCEEEE
Confidence            66778899999999999  9999    99999999999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=252.62  Aligned_cols=245  Identities=13%  Similarity=0.193  Sum_probs=201.4

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCC--CCeeeEEEcCccccccccceeEEEEcCC--CCEEEEee
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSV--GGEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF  131 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~  131 (334)
                      .|...|.+++|       +|++++|++++.||.|++||+.  +++....+..|..     .|++++|+++  +++|++++
T Consensus         9 ~h~~~v~~~~~-------s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~~   76 (379)
T 3jrp_A            9 AHNELIHDAVL-------DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCS   76 (379)
T ss_dssp             ECCCCEEEEEE-------CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCGGGCSEEEEEE
T ss_pred             CCcccEEEEEE-------cCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCC-----cEEEEEeCCCCCCCEEEEec
Confidence            46688999888       6799999999999999999997  4556667776554     8999999987  89999988


Q ss_pred             -CCcEEEEEcCCCCC-eeeeecccccccccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCCC--ceEeeccCCCCeE
Q psy2305         132 -LSEVKIFSTDRPGR-ECVSRNLKPWFRKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDGR--PLFFLKGHNGGIT  205 (334)
Q Consensus       132 -d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~i~  205 (334)
                       |+.|++||+.. ++ ....   ....|...|.+++|+|+  +. +|++++.|+.|++||++++.  ....+..|...|.
T Consensus        77 ~dg~v~iwd~~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~  151 (379)
T 3jrp_A           77 YDGKVLIWKEEN-GRWSQIA---VHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  151 (379)
T ss_dssp             TTSCEEEEEEET-TEEEEEE---EECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred             cCCEEEEEEcCC-CceeEee---eecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceE
Confidence             99999999996 33 1222   46779999999999999  88 99999999999999998873  4456678999999


Q ss_pred             EEEEcc-------------CCcEEEeeecCCCeEEEEEccCCCc---cceeecccccCCceEEEEecCC---CceEEeee
Q psy2305         206 HLEFSS-------------NGILLFSGARKDCEIICWDLRNPGC---ILHTFPRQVSTNQRVYFDLTSC---SNYLLSGN  266 (334)
Q Consensus       206 ~~~~~~-------------~~~~l~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~  266 (334)
                      +++|+|             ++.+|++++ .|+.|++||++....   ....+..|  ...+.+++|+|+   +++|++++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEE
T ss_pred             EEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCcceeeEEEEecc--cCcEeEEEECCCCCCCCeEEEEe
Confidence            999999             699999999 899999999987332   22344444  677899999999   89999999


Q ss_pred             cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         267 TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       267 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .||.|++||+..+...       ....+.....|...|.+++|  +|++    ++|++++.||.+++
T Consensus       229 ~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~v~~~~~--s~~g----~~l~~~~~dg~i~i  282 (379)
T 3jrp_A          229 QDRTCIIWTQDNEQGP-------WKKTLLKEEKFPDVLWRASW--SLSG----NVLALSGGDNKVTL  282 (379)
T ss_dssp             TTSCEEEEEESSTTSC-------CEEEESSSSCCSSCEEEEEE--CSSS----CCEEEEESSSSEEE
T ss_pred             CCCEEEEEeCCCCCcc-------ceeeeeccccCCCcEEEEEE--cCCC----CEEEEecCCCcEEE
Confidence            9999999999986321       00122333447789999999  9999    99999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.6e-35  Score=275.99  Aligned_cols=288  Identities=11%  Similarity=0.143  Sum_probs=228.6

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .+|.+++|+|++++|++++.||.|++|++.+++..              ..+. .|...|.+++|       +|++++|+
T Consensus        56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--------------~~~~-~~~~~v~~~~~-------s~~~~~l~  113 (814)
T 3mkq_A           56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV--------------VDFE-AHPDYIRSIAV-------HPTKPYVL  113 (814)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE--------------EEEE-CCSSCEEEEEE-------CSSSSEEE
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--------------EEEe-cCCCCEEEEEE-------eCCCCEEE
Confidence            46999999999999999999999999999988865              3443 36678988888       67999999


Q ss_pred             EeeCCCcEEEEeCCCC-eeeEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          82 CSSMYAPIHLWDSVGG-EIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      +++.||.|++||+.++ .....+..+..     .|.+++|+| ++..|++++ |+.|++||+.. +.....   ....+.
T Consensus       114 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~-~~~~~~---~~~~~~  184 (814)
T 3mkq_A          114 SGSDDLTVKLWNWENNWALEQTFEGHEH-----FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFT---LTTGQE  184 (814)
T ss_dssp             EEETTSEEEEEEGGGTSEEEEEEECCSS-----CEEEEEEETTEEEEEEEEETTSEEEEEETTC-SSCSEE---EECCCT
T ss_pred             EEcCCCEEEEEECCCCceEEEEEcCCCC-----cEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcceeE---EecCCC
Confidence            9999999999999886 66667766555     899999999 888899887 99999999986 333332   233455


Q ss_pred             cceEEEEEcC--CCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         159 NIVSAIAINP--VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       159 ~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      ..+.+++|+|  ++. ++++++.||.|++||+++++.+..+.+|...|.+++|+|++++|++++ .||.|++||+.+ +.
T Consensus       185 ~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~-~~  261 (814)
T 3mkq_A          185 RGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSST-YK  261 (814)
T ss_dssp             TCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTT-CS
T ss_pred             CCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCC-Cc
Confidence            8899999999  888 999999999999999999999999999999999999999999999999 899999999997 67


Q ss_pred             cceeecccccCCceEEEEecCCCce-EEeeecCCcEEEEeCCCCCCCC--CCCcc-------------------------
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCSNY-LLSGNTNGDLSIWNVNTSNLPS--SPYEE-------------------------  288 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~-------------------------  288 (334)
                      ....+..+  ...+.+++|+|++.. +++++.++.+.+|++.......  +|+..                         
T Consensus       262 ~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (814)
T 3mkq_A          262 VEKTLNVG--LERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEV  339 (814)
T ss_dssp             EEEEECCS--SSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCC
T ss_pred             EEEEeecC--CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccc
Confidence            67777655  567889999999873 2444557779999887643221  11110                         


Q ss_pred             ----ccccccceecccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         289 ----SVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       289 ----~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                          ........+..+...+.+++|  +|++    ++|++++ |+.+.
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~--spdg----~~la~~~-~~~~~  380 (814)
T 3mkq_A          340 EQDEPLSLQTKELGSVDVFPQSLAH--SPNG----RFVTVVG-DGEYV  380 (814)
T ss_dssp             CSSSCBCCCCEEECCCSSCCSEEEE--CTTS----SEEEEEE-TTEEE
T ss_pred             ccCccceeeeecCCCCccCCceeEE--CCCC----CEEEEec-CCEEE
Confidence                000111222344556788999  9999    8888887 66654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.5e-36  Score=253.27  Aligned_cols=239  Identities=10%  Similarity=0.047  Sum_probs=202.7

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCCCCEEEEee-CC
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS  133 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~  133 (334)
                      |...|.+++|       +|++++|++++.|+.|++||+.+++  ....+..+..     .|.+++|+|++++|++++ |+
T Consensus         7 ~~~~i~~~~~-------s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~~~~~dg   74 (372)
T 1k8k_C            7 LVEPISCHAW-------NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTDR   74 (372)
T ss_dssp             CSSCCCEEEE-------CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEETTS
T ss_pred             cCCCeEEEEE-------CCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCC-----cccEEEEeCCCCEEEEEcCCC
Confidence            5678888887       6799999999999999999999887  7777776554     899999999999999987 99


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc----eEeeccCCCCeEEEEE
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP----LFFLKGHNGGITHLEF  209 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~i~~~~~  209 (334)
                      .|++||+.. ++.....  ....|...|.+++|+|+++ +|++++.|+.|++||++.++.    .....+|...|.+++|
T Consensus        75 ~i~vwd~~~-~~~~~~~--~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~  150 (372)
T 1k8k_C           75 NAYVWTLKG-RTWKPTL--VILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW  150 (372)
T ss_dssp             CEEEEEEET-TEEEEEE--ECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred             eEEEEECCC-CeeeeeE--EeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence            999999986 3322211  3567889999999999999 999999999999999988763    2333678899999999


Q ss_pred             ccCCcEEEeeecCCCeEEEEEccC-----------------CCccceeecccccCCceEEEEecCCCceEEeeecCCcEE
Q psy2305         210 SSNGILLFSGARKDCEIICWDLRN-----------------PGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLS  272 (334)
Q Consensus       210 ~~~~~~l~~~~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  272 (334)
                      +|++++|++++ .|+.|++||++.                 .+..+..+..+  ...+.+++|+|++++|++++.|+.|+
T Consensus       151 ~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~  227 (372)
T 1k8k_C          151 HPNSVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGSRVAWVSHDSTVC  227 (372)
T ss_dssp             CTTSSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             cCCCCEEEEEc-CCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCCEEEEEeCCCEEE
Confidence            99999999999 899999999641                 14455555544  66788999999999999999999999


Q ss_pred             EEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         273 IWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       273 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +||+.++            +.+..+..|...|.+++|  +|++    ++|+++ .|+.+++
T Consensus       228 i~d~~~~------------~~~~~~~~~~~~v~~~~~--~~~~----~~l~~~-~d~~i~i  269 (372)
T 1k8k_C          228 LADADKK------------MAVATLASETLPLLAVTF--ITES----SLVAAG-HDCFPVL  269 (372)
T ss_dssp             EEEGGGT------------TEEEEEECSSCCEEEEEE--EETT----EEEEEE-TTSSCEE
T ss_pred             EEECCCC------------ceeEEEccCCCCeEEEEE--ecCC----CEEEEE-eCCeEEE
Confidence            9999987            778888899999999999  9999    888877 8887764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.3e-35  Score=249.13  Aligned_cols=252  Identities=14%  Similarity=0.129  Sum_probs=202.9

Q ss_pred             eeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCC----eeeEEEcCccccccccceeEEEEcC--CCCEEE
Q psy2305          55 IKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGG----EIKATYRPYNQVDEVTHAYSLAFSL--DGNKIY  128 (334)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~  128 (334)
                      .+|.+.|.+++|       +|++++|++++.||.|++||+.++    +....+..+..     .|.+++|+|  ++++|+
T Consensus         8 ~gH~~~v~~~~~-------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~l~   75 (351)
T 3f3f_A            8 SGHDDLVHDVVY-------DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRIIA   75 (351)
T ss_dssp             CCCSSCEEEEEE-------CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSEEE
T ss_pred             cccccceeEEEE-------cCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCEEE
Confidence            356788999888       669999999999999999999876    35555665444     899999999  689999


Q ss_pred             Eee-CCcEEEEEcCCCC--------CeeeeecccccccccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCCCceEee
Q psy2305         129 AGF-LSEVKIFSTDRPG--------RECVSRNLKPWFRKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDGRPLFFL  197 (334)
Q Consensus       129 ~~~-d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~  197 (334)
                      +++ |+.|++||++...        +...    .+..|...|.+++|+|+  +. +|++++.||.|++||+++++.+..+
T Consensus        76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~  150 (351)
T 3f3f_A           76 SASYDKTVKLWEEDPDQEECSGRRWNKLC----TLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSW  150 (351)
T ss_dssp             EEETTSCEEEEEECTTSCTTSSCSEEEEE----EECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCC
T ss_pred             EEcCCCeEEEEecCCCcccccccCcceee----eecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccc
Confidence            988 9999999998632        1122    56789999999999999  88 9999999999999999888765544


Q ss_pred             c-------------cCCCCeEEEEEccC---CcEEEeeecCCCeEEEEEccCCCcc--ceeecccccCCceEEEEecCCC
Q psy2305         198 K-------------GHNGGITHLEFSSN---GILLFSGARKDCEIICWDLRNPGCI--LHTFPRQVSTNQRVYFDLTSCS  259 (334)
Q Consensus       198 ~-------------~~~~~i~~~~~~~~---~~~l~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~  259 (334)
                      .             .|...+.+++|+|+   +.+|++++ .++.+.+|+... +..  +..+..|  ...+.+++|+|++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~~h--~~~i~~~~~~p~~  226 (351)
T 3f3f_A          151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKD-GKLHVAAKLPGH--KSLIRSISWAPSI  226 (351)
T ss_dssp             EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTT-SCEEEEEECCCC--CSCEEEEEECCCS
T ss_pred             cccccccccccccCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCC-CceeeeeecCCC--CcceeEEEECCCC
Confidence            3             57889999999997   89999999 899997777765 443  4444444  6789999999998


Q ss_pred             ----ceEEeeecCCcEEEEeCCCCCCCCCCC----------------------------------ccccccccceecccc
Q psy2305         260 ----NYLLSGNTNGDLSIWNVNTSNLPSSPY----------------------------------EESVQEPLYKFSAHQ  301 (334)
Q Consensus       260 ----~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~  301 (334)
                          ++|++++.||.|++||+..+.......                                  .....+.+..+.+|.
T Consensus       227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  306 (351)
T 3f3f_A          227 GRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN  306 (351)
T ss_dssp             SCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred             CCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence                899999999999999998753221000                                  001224566778899


Q ss_pred             cccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         302 DCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       302 ~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ..|++++|  +|++    ++|++++.||.|++
T Consensus       307 ~~v~~~~~--s~~~----~~l~s~~~dg~v~i  332 (351)
T 3f3f_A          307 GEVWSVSW--NLTG----TILSSAGDDGKVRL  332 (351)
T ss_dssp             SCEEEEEE--CSSS----CCEEEEETTSCEEE
T ss_pred             ccEEEEEE--cCCC----CEEEEecCCCcEEE
Confidence            99999999  9999    99999999999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-35  Score=247.71  Aligned_cols=242  Identities=12%  Similarity=0.056  Sum_probs=206.1

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++|+|++++|++++.||.|++||+.+++..              ..+.  +...+.+++|       +|++++|+
T Consensus        75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~~--~~~~v~~~~~-------~~~~~~l~  131 (369)
T 3zwl_B           75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV--------------ATWK--SPVPVKRVEF-------SPCGNYFL  131 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE--------------EEEE--CSSCEEEEEE-------CTTSSEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--------------EEee--cCCCeEEEEE-------ccCCCEEE
Confidence            46899999999999999999999999999988865              2333  5677888887       67999999


Q ss_pred             EeeCC-----CcEEEEeCCCCee-----------eEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCC
Q psy2305          82 CSSMY-----APIHLWDSVGGEI-----------KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPG  144 (334)
Q Consensus        82 ~~~~d-----~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~  144 (334)
                      +++.+     +.|.+||+..+..           ...+..+....   .+.+++|+|++++|++++ |+.|++||+....
T Consensus       132 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  208 (369)
T 3zwl_B          132 AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD---AATVAGWSTKGKYIIAGHKDGKISKYDVSNNY  208 (369)
T ss_dssp             EEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC---CEEEEEECGGGCEEEEEETTSEEEEEETTTTT
T ss_pred             EecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc---ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence            99998     9999999875532           22222222111   789999999999999987 9999999998633


Q ss_pred             CeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305         145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                      ....    .+..|...|.+++|+|+++ +|++++.|+.|++||+++++.+..+. +...+..++|+|+++++++++ .++
T Consensus       209 ~~~~----~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~  281 (369)
T 3zwl_B          209 EYVD----SIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGG-GQE  281 (369)
T ss_dssp             EEEE----EEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE-CCC
T ss_pred             EeEE----EEecCCCceeEEEECCCCC-EEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEee-cCC
Confidence            4443    5678899999999999999 99999999999999999999988887 778899999999999999999 787


Q ss_pred             --------------eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         225 --------------EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       225 --------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                                    .+++||... ++.+..+..|  ...+.+++|+|++++|++++.||.|++|+++.+
T Consensus       282 ~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          282 AKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGH--FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             -------------CEEEEEETTT-CCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             CceEEEEecCCCcceeEEEecCC-Ccchhheecc--cCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence                          899999988 7777777766  667899999999999999999999999999876

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.9e-34  Score=241.64  Aligned_cols=242  Identities=20%  Similarity=0.274  Sum_probs=194.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++|+|+|++|++++.|+.|++|+.......               .....+...+....+       ++++++|+
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-------~~~~~~l~  144 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT---------------RRFVGHTKDVLSVAF-------SSDNRQIV  144 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE---------------EEEECCSSCEEEEEE-------CTTSSCEE
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeeccccee---------------eeecCCCCceeEEEE-------eecCccce
Confidence            47999999999999999999999999999887664               222234455555555       67899999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC--CEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG--NKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      +++.|+.+++||+....... .....+..   .+..++|++++  .++++++ |+.|++||++. ++...    .+.+|.
T Consensus       145 s~s~d~~~~~~d~~~~~~~~-~~~~~~~~---~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~----~~~~h~  215 (340)
T 4aow_A          145 SGSRDKTIKLWNTLGVCKYT-VQDESHSE---WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKT----NHIGHT  215 (340)
T ss_dssp             EEETTSCEEEECTTSCEEEE-ECSSSCSS---CEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEE----EECCCS
T ss_pred             eecCCCeEEEEEeCCCceEE-EEeccccC---cccceEEccCCCCcEEEEEcCCCEEEEEECCC-Cceee----EecCCC
Confidence            99999999999987654433 22222333   78999999875  4566776 99999999996 44444    578899


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      ..|++++|+|+++ +|++|+.|+.|++||+++.+.+..+.. ...+.++.|+|++.+++ ++ .|+.|++||++. +..+
T Consensus       216 ~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~~-~d~~i~iwd~~~-~~~~  290 (340)
T 4aow_A          216 GYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLC-AA-TGPSIKIWDLEG-KIIV  290 (340)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEE-EE-ETTEEEEEETTT-TEEE
T ss_pred             CcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceee-cc-CCCEEEEEECCC-CeEE
Confidence            9999999999999 999999999999999999999888874 46799999999886654 55 599999999986 4444


Q ss_pred             eeecc-------cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         239 HTFPR-------QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       239 ~~~~~-------~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ..+..       ..+...+.+++|+|+|++|++|+.||.|+|||+++|
T Consensus       291 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          291 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             EEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             EeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            44332       223667899999999999999999999999999987

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.7e-35  Score=253.23  Aligned_cols=254  Identities=17%  Similarity=0.234  Sum_probs=198.2

Q ss_pred             CceeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-E
Q psy2305           2 DIEEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-Y   79 (334)
Q Consensus         2 d~V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~   79 (334)
                      +.|++++|+|+ +.+||+++.||.|++|++........    ..........+. .|...|++++|       +|++. +
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~----~~~~~~~~~~~~-~h~~~v~~l~~-------~~~~~~~  196 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE----PSGECQPDLRLR-GHQKEGYGLSW-------NPNLNGY  196 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC----TTCCCCCSEEEE-CCSSCCCCEEE-------CTTSTTE
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC----ccccCCCcEEec-CCCCCeEEEEe-------CCCCCCe
Confidence            46899999997 67999999999999999976311100    000001123344 45677888777       66777 9


Q ss_pred             EEEeeCCCcEEEEeCCCCee-------eEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCC--Ceee
Q psy2305          80 FLCSSMYAPIHLWDSVGGEI-------KATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPG--RECV  148 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~--~~~~  148 (334)
                      |++++.||.|++|++.++..       ...+..+..     .|.+++|+| ++.+|++++ |+.|++||++...  ....
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~  271 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA-----VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH  271 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSS-----CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCC-----CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee
Confidence            99999999999999987322       334444333     899999999 567888887 9999999999732  2333


Q ss_pred             eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCceEeeccCCCCeEEEEEccCCc-EEEeeecCCCeE
Q psy2305         149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRPLFFLKGHNGGITHLEFSSNGI-LLFSGARKDCEI  226 (334)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~d~~i  226 (334)
                          .+..|...|++++|+|+++.++++|+.||.|++||+++ .+++..+..|...|.+++|+|+++ +|++++ .|+.|
T Consensus       272 ----~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~-~d~~i  346 (430)
T 2xyi_A          272 ----TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG-TDRRL  346 (430)
T ss_dssp             ----EEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE-TTSCC
T ss_pred             ----EeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe-CCCcE
Confidence                45688999999999999986799999999999999998 567888999999999999999995 688888 89999


Q ss_pred             EEEEccCCC-------------ccceeecccccCCceEEEEecCCCc-eEEeeecCCcEEEEeCCCC
Q psy2305         227 ICWDLRNPG-------------CILHTFPRQVSTNQRVYFDLTSCSN-YLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       227 ~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~  279 (334)
                      ++||++..+             ..+..+.+|  ...+.+++|+|+++ +|++++.||.|++|++...
T Consensus       347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            999998632             223333333  66789999999999 8999999999999998764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-36  Score=262.08  Aligned_cols=278  Identities=14%  Similarity=0.150  Sum_probs=207.0

Q ss_pred             EEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC-CCcEEEEeeCC
Q psy2305           8 DEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG-FTSYFLCSSMY   86 (334)
Q Consensus         8 ~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~l~~~~~d   86 (334)
                      .|+|+++.+++++      .|+.. ++..              ..+..+|...|.+++|       +| ++++|++|+.|
T Consensus        34 ~f~~~~~~~~~~~------~w~~~-g~~~--------------~~~~~~h~~~V~~~~~-------s~~~~~~l~s~s~d   85 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLR-GKLI--------------ATLMENEPNSITSSAV-------SPGETPYLITGSDQ   85 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCC-CCEE--------------EEECTTTTSCEEEEEE-------ECSSSCEEEEEETT
T ss_pred             hcCCccccccccc------ccccc-ceEE--------------eeeccCCCCceEEEEE-------CCCCCCEEEEecCC
Confidence            3567777777664      37643 3333              3554567789999888       77 89999999999


Q ss_pred             CcEEEEeCCC---Ce---eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCC--CCCeeeeec------
Q psy2305          87 APIHLWDSVG---GE---IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDR--PGRECVSRN------  151 (334)
Q Consensus        87 ~~i~iwd~~~---~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~--~~~~~~~~~------  151 (334)
                      |.|++||+.+   +.   ....+. |..     .|.+++|+|++++|++++ |+.|++||+..  .++......      
T Consensus        86 g~v~vwd~~~~~~~~~~~~~~~~~-h~~-----~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~  159 (437)
T 3gre_A           86 GVIKIWNLKEIIVGEVYSSSLTYD-CSS-----TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRK  159 (437)
T ss_dssp             SEEEEEEHHHHHTTCCCSCSEEEE-CSS-----CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ceEEEeECcccccCcccceeeecc-CCC-----CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEE
Confidence            9999999876   33   122222 222     899999999999999988 99999999951  133322100      


Q ss_pred             ccccc--cccceEEEE--EcCCCCcEEEEeecCCeEEEEECCCCCceEeecc--CCCCeEEEEEccCCcEEEeeecCCCe
Q psy2305         152 LKPWF--RKNIVSAIA--INPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG--HNGGITHLEFSSNGILLFSGARKDCE  225 (334)
Q Consensus       152 ~~~~~--~~~~v~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~~  225 (334)
                      +.+..  +...+.++.  +++++. +|++++.|+.|++||+++++.+..+.+  |...|.+++|+|++++|++++ .|+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~  237 (437)
T 3gre_A          160 INLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGI  237 (437)
T ss_dssp             EEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSC
T ss_pred             EEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCe
Confidence            01112  556677777  568888 999999999999999999999999988  889999999999999999999 8999


Q ss_pred             EEEEEccCCCccceeec-ccccCCceEEE----EecCCCceEEeeecCCcEEEEeCCCCCCCC--------------CCC
Q psy2305         226 IICWDLRNPGCILHTFP-RQVSTNQRVYF----DLTSCSNYLLSGNTNGDLSIWNVNTSNLPS--------------SPY  286 (334)
Q Consensus       226 i~iwd~~~~~~~~~~~~-~~~~~~~~~~~----~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------~~~  286 (334)
                      |++||++. +.++..+. .+  ...+.++    .|+|++.+|++++.||.|++||+.+++...              .|+
T Consensus       238 i~iwd~~~-~~~~~~~~~~~--~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  314 (437)
T 3gre_A          238 IDIWDIRF-NVLIRSWSFGD--HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI  314 (437)
T ss_dssp             EEEEETTT-TEEEEEEBCTT--CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred             EEEEEcCC-ccEEEEEecCC--CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence            99999998 77666664 33  4578888    455678899999999999999999874220              000


Q ss_pred             ccccccccceecc--cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         287 EESVQEPLYKFSA--HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       287 ~~~~~~~~~~~~~--~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ....  ....+.+  |...|++++|  + ++    ++|++++.|+.|++
T Consensus       315 ~~~l--~~~~~~~~~~~~~v~~l~~--~-~~----~~l~s~~~d~~i~~  354 (437)
T 3gre_A          315 EKGL--EELNFCGIRSLNALSTISV--S-ND----KILLTDEATSSIVM  354 (437)
T ss_dssp             CSSG--GGCCCCCCCSGGGGCCEEE--E-TT----EEEEEEGGGTEEEE
T ss_pred             cccc--ccceecccccCCceEEEEE--C-Cc----eEEEecCCCCeEEE
Confidence            0000  0001223  6778999999  8 78    89999999999875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=5.3e-35  Score=250.89  Aligned_cols=251  Identities=13%  Similarity=0.167  Sum_probs=199.6

Q ss_pred             CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC-cE
Q psy2305           2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT-SY   79 (334)
Q Consensus         2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~-~~   79 (334)
                      ++|.+++|+| ++++|++|+.||.|++|++.++....       ........+. .|...|.+++|       +|++ ++
T Consensus        82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-------~~~~~~~~~~-~h~~~v~~~~~-------~p~~~~~  146 (402)
T 2aq5_A           82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-------PLREPVITLE-GHTKRVGIVAW-------HPTAQNV  146 (402)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-------CBCSCSEEEE-CCSSCEEEEEE-------CSSBTTE
T ss_pred             CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-------ccCCceEEec-CCCCeEEEEEE-------CcCCCCE
Confidence            4799999999 99999999999999999998874320       0001123444 46688999888       5687 69


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEE--cCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc-c
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATY--RPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP-W  155 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-~  155 (334)
                      |++++.|+.|++||+.+++.+..+  ..+..     .|.+++|+|++++|++++ |+.|++||+++ ++...    .+ .
T Consensus       147 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~----~~~~  216 (402)
T 2aq5_A          147 LLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-----TIYSVDWSRDGALICTSCRDKRVRVIEPRK-GTVVA----EKDR  216 (402)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECTTTCCS-----CEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEE----EEEC
T ss_pred             EEEEcCCCEEEEEECCCCCccEEEecCCCCC-----ceEEEEECCCCCEEEEEecCCcEEEEeCCC-Cceee----eecc
Confidence            999999999999999999998888  44443     899999999999999987 99999999996 55444    34 5


Q ss_pred             ccccc-eEEEEEcCCCCcEEEEe---ecCCeEEEEECCCCCc-eEeec-cCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         156 FRKNI-VSAIAINPVHPDICALG---TYSKIIGLFSDSDGRP-LFFLK-GHNGGITHLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       156 ~~~~~-v~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                      .|... +.++.|+|++. +|++|   +.|+.|++||+++++. +.... .|...+.+++|+|++++|++++..|+.|++|
T Consensus       217 ~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~  295 (402)
T 2aq5_A          217 PHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF  295 (402)
T ss_dssp             SSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred             CCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence            67665 89999999998 89988   7899999999988754 33332 4677899999999999987544269999999


Q ss_pred             EccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         230 DLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      |+......+..+..+.+...+.+++|+|++.++++  .++.+++|++.++.
T Consensus       296 d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          296 EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred             EecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence            99973323556665555678889999999999875  45689999998753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.9e-35  Score=253.90  Aligned_cols=246  Identities=12%  Similarity=0.134  Sum_probs=193.1

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe-----------eeEEEcCcccc-------ccccceeEE
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE-----------IKATYRPYNQV-------DEVTHAYSL  118 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~-------~~~~~v~~~  118 (334)
                      +.+.|.+++|       +|++++|++|+.||.|++||+.+++           ....+..|...       .....|.++
T Consensus        27 ~~~~V~~v~~-------s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l   99 (447)
T 3dw8_B           27 EADIISTVEF-------NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI   99 (447)
T ss_dssp             GGGSEEEEEE-------CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred             ccCcEEEEEE-------CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE
Confidence            5678999888       6799999999999999999998776           46667665410       000179999


Q ss_pred             EEcCCC--CEEEEee-CCcEEEEEcCCCCCeee------------------------------------eeccccccccc
Q psy2305         119 AFSLDG--NKIYAGF-LSEVKIFSTDRPGRECV------------------------------------SRNLKPWFRKN  159 (334)
Q Consensus       119 ~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~------------------------------------~~~~~~~~~~~  159 (334)
                      +|+|++  .+|++++ |+.|++||+.. +....                                    .......+|..
T Consensus       100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  178 (447)
T 3dw8_B          100 RWLPQKNAAQFLLSTNDKTIKLWKISE-RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY  178 (447)
T ss_dssp             EECCCCSSSEEEEEECSSCEEEEEEEE-EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred             EEcCCCCcceEEEeCCCCeEEEEeccc-ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence            999998  7888877 99999999874 11100                                    00001367999


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCceE-------eeccCCCCeEEEEEccCC-cEEEeeecCCCeEEEEE
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRPLF-------FLKGHNGGITHLEFSSNG-ILLFSGARKDCEIICWD  230 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~~d~~i~iwd  230 (334)
                      .|.+++|+|+++ +|++| .|+.|++||+++ ++.+.       .+.+|...|.+++|+|++ ++|++++ .|+.|++||
T Consensus       179 ~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd  255 (447)
T 3dw8_B          179 HINSISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS-SKGTIRLCD  255 (447)
T ss_dssp             CCCEEEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-TTSCEEEEE
T ss_pred             ceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-CCCeEEEEE
Confidence            999999999999 99998 799999999984 34443       356899999999999998 9999999 899999999


Q ss_pred             ccCCCcc----ceeeccccc----------CCceEEEEecCCCceEEeeecCCcEEEEeCCC-CCCCCCCCccccccccc
Q psy2305         231 LRNPGCI----LHTFPRQVS----------TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT-SNLPSSPYEESVQEPLY  295 (334)
Q Consensus       231 ~~~~~~~----~~~~~~~~~----------~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~  295 (334)
                      ++. +..    ...+..+..          ...+.+++|+|+|++|++++. +.|++||+.. +            +++.
T Consensus       256 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~------------~~~~  321 (447)
T 3dw8_B          256 MRA-SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN------------RPVE  321 (447)
T ss_dssp             TTT-CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS------------SCSC
T ss_pred             CcC-CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc------------cccc
Confidence            997 443    456665421          127899999999999999998 9999999987 5            5677


Q ss_pred             eeccccccc---------------ceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         296 KFSAHQDCT---------------NGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       296 ~~~~~~~~i---------------~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+.+|...+               ..++|  +|++    ++|++++.||.|++
T Consensus       322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~--s~~~----~~l~s~s~dg~v~i  368 (447)
T 3dw8_B          322 TYQVHEYLRSKLCSLYENDCIFDKFECCW--NGSD----SVVMTGSYNNFFRM  368 (447)
T ss_dssp             CEESCGGGTTTHHHHHHTSGGGCCCCEEE--CTTS----SEEEEECSTTEEEE
T ss_pred             eeeccccccccccccccccccccceEEEE--CCCC----CEEEEeccCCEEEE
Confidence            777775422               23899  9999    99999999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.6e-35  Score=252.74  Aligned_cols=237  Identities=14%  Similarity=0.125  Sum_probs=182.0

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-CCCEEEEee-CC
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LS  133 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~  133 (334)
                      .+...|++++|+|.      ++++||+|+.||.|+|||+.+++....+....|..   .|++++|+| ++++|++++ |+
T Consensus       117 ~~~~~V~~l~~~P~------~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~---~V~~l~f~p~~~~~l~s~s~D~  187 (435)
T 4e54_B          117 PFDRRATSLAWHPT------HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG---SITGLKFNPLNTNQFYASSMEG  187 (435)
T ss_dssp             ECSSCEEEEEECSS------CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSC---CCCEEEECSSCTTEEEEECSSS
T ss_pred             CCCCCEEEEEEeCC------CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCC---CEEEEEEeCCCCCEEEEEeCCC
Confidence            35677999999552      56789999999999999998877665555444444   899999998 688999887 99


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG  213 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  213 (334)
                      +|++||++.  ....... ....+...+.+++|+|++. +|++|+.||.|++||++ ++.+..+.+|...|.+++|+|++
T Consensus       188 ~v~iwd~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          188 TTRLQDFKG--NILRVFA-SSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCC  262 (435)
T ss_dssp             CEEEEETTS--CEEEEEE-CCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTC
T ss_pred             EEEEeeccC--CceeEEe-ccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCC
Confidence            999999984  3333210 2233455688999999999 99999999999999986 56677889999999999999988


Q ss_pred             c-EEEeeecCCCeEEEEEccCCCccceee-cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccc
Q psy2305         214 I-LLFSGARKDCEIICWDLRNPGCILHTF-PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQ  291 (334)
Q Consensus       214 ~-~l~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  291 (334)
                      . +|++++ .|+.|++||++. ......+ ....+...+.+++|+|+|++|++++.||.|++||+.++            
T Consensus       263 ~~~~~s~s-~d~~v~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~------------  328 (435)
T 4e54_B          263 DWFLATAS-VDQTVKIWDLRQ-VRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW------------  328 (435)
T ss_dssp             SSEEEEEE-TTSBCCEEETTT-CCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS------------
T ss_pred             ceEEEEec-CcceeeEEeccc-ccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC------------
Confidence            6 677888 899999999987 3322222 22234678899999999999999999999999999987            


Q ss_pred             cccceeccccc------ccceeeeccCCCcccceeeEEeee
Q psy2305         292 EPLYKFSAHQD------CTNGVRWKHHKFERDLLVADATCS  326 (334)
Q Consensus       292 ~~~~~~~~~~~------~i~~~~~~~s~~~~~~~~~l~t~~  326 (334)
                      .....+..|..      .+....|  +|++    .++++++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~  363 (435)
T 4e54_B          329 DCPLGLIPHPHRHFQHLTPIKAAW--HPRY----NLIVVGR  363 (435)
T ss_dssp             SSEEEECCCCCCCCSSSCCCBCEE--CSSS----SCEEEEC
T ss_pred             ccceEEecccccccccceeEEEEE--cCCC----CEEEEEE
Confidence            33344433322      2345567  7777    6666553

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=234.28  Aligned_cols=236  Identities=16%  Similarity=0.192  Sum_probs=198.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|.+++|+|++++|++++.||.|++|++.......           ....+. .|...|.++.|         ++++|+
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-----------~~~~~~-~~~~~i~~~~~---------~~~~l~  118 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED-----------PLYTLI-GHQGNVCSLSF---------QDGVVI  118 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC-----------C-CEEC-CCSSCEEEEEE---------ETTEEE
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC-----------cccchh-hcccCEEEEEe---------cCCEEE
Confidence            468999999999999999999999999987654220           112333 35678888877         567999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc-cc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF-RK  158 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-~~  158 (334)
                      +++.|+.|++||  .++....+..+..     .+.+++|+| +++++++++ |+.|++||..   ....    .+.. |.
T Consensus       119 ~~~~d~~i~~~d--~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~----~~~~~~~  184 (313)
T 3odt_A          119 SGSWDKTAKVWK--EGSLVYNLQAHNA-----SVWDAKVVSFSENKFLTASADKTIKLWQND---KVIK----TFSGIHN  184 (313)
T ss_dssp             EEETTSEEEEEE--TTEEEEEEECCSS-----CEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEE----EECSSCS
T ss_pred             EEeCCCCEEEEc--CCcEEEecccCCC-----ceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEE----EEeccCc
Confidence            999999999999  6677777776554     899999998 889999887 9999999943   3333    2344 88


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      ..+.+++|+|++.  +++++.||.|++||+++++.+..+.+|...|.+++|+|++ .|++++ .|+.|++||+++ ++..
T Consensus       185 ~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~dg~v~iwd~~~-~~~~  259 (313)
T 3odt_A          185 DVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG-EDRTVRIWSKEN-GSLK  259 (313)
T ss_dssp             SCEEEEEEEETTE--EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE-TTSEEEEECTTT-CCEE
T ss_pred             ccEEEEEEcCCCe--EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe-cCCEEEEEECCC-Ccee
Confidence            9999999999985  8889999999999999999999999999999999999999 588898 899999999998 7777


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      ..+..+  ...+.+++|+|+++ +++++.||.|++||+++++
T Consensus       260 ~~~~~~--~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          260 QVITLP--AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             EEEECS--SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred             EEEecc--CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence            777765  56788999999998 5568899999999999874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=4.7e-33  Score=230.98  Aligned_cols=244  Identities=15%  Similarity=0.195  Sum_probs=197.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|+|++++||+|+.||+|++|++.+++..              ..+.. |...+.++.+         ++..++
T Consensus        68 ~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~--------------~~~~~-h~~~~~~~~~---------~~~~l~  123 (318)
T 4ggc_A           68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--------------RNMTS-HSARVGSLSW---------NSYILS  123 (318)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--------------EEEEC-CSSCEEEEEE---------ETTEEE
T ss_pred             CeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE--------------EEecC-ccceEEEeec---------CCCEEE
Confidence            46999999999999999999999999999998876              34443 4455555443         677999


Q ss_pred             EeeCCCcEEEEeCCCCe-eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGE-IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +++.++.+++|+...+. .+..+..+..     .+..+.+++++++|++++ |+.|++||+.+ ++...........+..
T Consensus       124 s~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~  197 (318)
T 4ggc_A          124 SGSRSGHIHHHDVRVAEHHVATLSGHSQ-----EVCGLRWAPDGRHLASGGNDNLVNVWPSAP-GEGGWVPLQTFTQHQG  197 (318)
T ss_dssp             EEETTSEEEEEETTSSSCEEEEEECCSS-----CEEEEEECTTSSEEEEEETTSCEEEEESSC-BTTBSCCSEEECCCCS
T ss_pred             EEecCCceEeeecCCCceeEEEEcCccC-----ceEEEEEcCCCCEEEEEecCcceeEEECCC-CcccccceeeecccCC
Confidence            99999999999987654 4455555444     889999999999999987 99999999986 3322111114566788


Q ss_pred             ceEEEEEcCCCCcEE--EEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeee-cCCCeEEEEEccCCCc
Q psy2305         160 IVSAIAINPVHPDIC--ALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA-RKDCEIICWDLRNPGC  236 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l--~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~d~~i~iwd~~~~~~  236 (334)
                      .|.+++++|++...+  ++++.++.|++||.+......... +...+..+.|+|++..+++++ ..|+.|++||+++ ++
T Consensus       198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~-~~  275 (318)
T 4ggc_A          198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT-MA  275 (318)
T ss_dssp             CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-CC
T ss_pred             ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCC-Cc
Confidence            999999999887454  356788999999998887766554 677899999999998877643 1589999999998 78


Q ss_pred             cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ++..+.+|  ...+.+++|+|+|++|++++.||+|+|||+...
T Consensus       276 ~~~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          276 KVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            88888887  678999999999999999999999999999764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-34  Score=264.94  Aligned_cols=245  Identities=13%  Similarity=0.197  Sum_probs=202.5

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCC--CCeeeEEEcCccccccccceeEEEEcCC--CCEEEEee
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSV--GGEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGF  131 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~  131 (334)
                      +|.+.|++++|       +|++++|++|+.||.|++||+.  +++....+..|..     .|++++|+|+  +++|++++
T Consensus         7 gH~~~V~~l~~-------s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~-----~V~~l~~s~~~~~~~l~s~s   74 (753)
T 3jro_A            7 AHNELIHDAVL-------DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCS   74 (753)
T ss_dssp             -CCCCEEEECC-------CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCTTSCSEEEEEE
T ss_pred             cCcceeEEEEE-------CCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcC-----ceEEEEecCCCCCCEEEEEe
Confidence            46688988877       6799999999999999999987  4456667776544     8999999998  89999988


Q ss_pred             -CCcEEEEEcCCCCC-eeeeecccccccccceEEEEEcCC--CCcEEEEeecCCeEEEEECCCC--CceEeeccCCCCeE
Q psy2305         132 -LSEVKIFSTDRPGR-ECVSRNLKPWFRKNIVSAIAINPV--HPDICALGTYSKIIGLFSDSDG--RPLFFLKGHNGGIT  205 (334)
Q Consensus       132 -d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i~  205 (334)
                       ||.|++||+.+ +. ....   ....|...|.+++|+|+  +. ++++|+.||.|++||++++  .....+.+|...|.
T Consensus        75 ~Dg~I~vwd~~~-~~~~~~~---~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~  149 (753)
T 3jro_A           75 YDGKVLIWKEEN-GRWSQIA---VHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (753)
T ss_dssp             TTSCEEEEEEET-TEEEEEE---EECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred             CCCeEEEEECCC-Ccccccc---cccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceE
Confidence             99999999996 33 1222   56789999999999999  88 9999999999999999877  34556678999999


Q ss_pred             EEEEcc-------------CCcEEEeeecCCCeEEEEEccCCC---ccceeecccccCCceEEEEecCC---CceEEeee
Q psy2305         206 HLEFSS-------------NGILLFSGARKDCEIICWDLRNPG---CILHTFPRQVSTNQRVYFDLTSC---SNYLLSGN  266 (334)
Q Consensus       206 ~~~~~~-------------~~~~l~~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~~~  266 (334)
                      +++|+|             ++++|++++ .||.|++||++...   .....+..|  ...+.+++|+|+   +++|++++
T Consensus       150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          150 SASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             EEEECCCC---------CGGGCCEEEEE-TTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEE
T ss_pred             EEEecCcccccccccccCCCCCEEEEEE-CCCeEEEEeccCCcccceeeeeecCC--CCcEEEEEeccCCCCCCEEEEEe
Confidence            999999             589999999 89999999998732   233444544  678999999999   99999999


Q ss_pred             cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         267 TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       267 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .||.|++||+.++...       ..........|...|++++|  +|++    ++|++++.||.|++
T Consensus       227 ~Dg~I~iwd~~~~~~~-------~~~~~~~~~~~~~~v~~l~~--spdg----~~l~s~s~Dg~I~v  280 (753)
T 3jro_A          227 QDRTCIIWTQDNEQGP-------WKKTLLKEEKFPDVLWRASW--SLSG----NVLALSGGDNKVTL  280 (753)
T ss_dssp             SSSCEEEEEESSSSSC-------CBCCBSSSSCCSSCCCCEEE--CTTT----CCEEEECSSSCEEC
T ss_pred             cCCEEEEecCCCCCCc-------ceeEEeccCCCCCceEEEEE--cCCC----CEEEEEcCCCEEEE
Confidence            9999999999986321       00133444568889999999  9999    99999999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=240.82  Aligned_cols=249  Identities=13%  Similarity=0.090  Sum_probs=196.9

Q ss_pred             CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      ..|.+++|+| ++.+|++++.||.|++||+.+++..              ..+  .+...+.++.|.|.    ++++.++
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--------------~~~--~~~~~~~~~~~~~~----~~~~~~~  159 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA--------------DVF--NFEETVYSHHMSPV----STKHCLV  159 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE--------------EEE--ECSSCEEEEEECSS----CSSCCEE
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc--------------eec--cCCCceeeeEeecC----CCCCcEE
Confidence            4699999999 7789999999999999999988764              222  24567888888653    5577799


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCE-EEEee-CCcEEEEEcCCCCCeeeee--------
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK-IYAGF-LSEVKIFSTDRPGRECVSR--------  150 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-d~~i~i~d~~~~~~~~~~~--------  150 (334)
                      ++++.|+.|++||+.+++....+..+..     .|.+++|+|++++ |++++ |+.|++||++.........        
T Consensus       160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  234 (408)
T 4a11_B          160 AVGTRGPKVQLCDLKSGSCSHILQGHRQ-----EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS  234 (408)
T ss_dssp             EEEESSSSEEEEESSSSCCCEEECCCCS-----CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred             EEEcCCCeEEEEeCCCcceeeeecCCCC-----cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence            9999999999999999998888887554     8999999999984 77777 9999999998643232211        


Q ss_pred             ---cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC-----CCeEEEEEccCCcEEEeeecC
Q psy2305         151 ---NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-----GGITHLEFSSNGILLFSGARK  222 (334)
Q Consensus       151 ---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~~  222 (334)
                         ......|...|.+++|+|+++ +|++++.||.|++||+++++....+..+.     ..+........+..+++++ .
T Consensus       235 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  312 (408)
T 4a11_B          235 QAVESANTAHNGKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP-Y  312 (408)
T ss_dssp             CCTTTSSCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE-E
T ss_pred             eeeccccccccCceeEEEEcCCCC-EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe-c
Confidence               002257889999999999999 99999999999999999887665543321     1122222223344566666 6


Q ss_pred             CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      ++.|++||+.+ +..+..+..|  ...+.+++|+|++++|++++.||.|++||+.+++
T Consensus       313 ~~~i~v~d~~~-~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          313 GSTIAVYTVYS-GEQITMLKGH--YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             TTEEEEEETTT-CCEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             CCEEEEEECcC-CcceeeeccC--CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence            99999999998 7778888776  6678999999999999999999999999999973

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=5e-33  Score=240.83  Aligned_cols=277  Identities=11%  Similarity=0.080  Sum_probs=217.7

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .+.+++|+|++.++++++.++.|++||+.+++.......         ..+ ..|...|.+++|       +++++++++
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------~~~-~~~~~~v~~~~~-------~~~~~~~~s  186 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP---------EKY-KKKLGFVETISI-------PEHNELWVS  186 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC---------HHH-HTTCCEEEEEEE-------GGGTEEEEE
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc---------ccc-cccCCceeEEEE-------cCCCEEEEE
Confidence            356899999888888888899999999998876410000         011 134567888777       668999999


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      ++.|+.|++||+.+++.+..+..+..     .+.+++|+|+++.++ ++. ++.|++||+++ ++...    .+.. ...
T Consensus       187 ~~~d~~v~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~----~~~~-~~~  255 (433)
T 3bws_A          187 QMQANAVHVFDLKTLAYKATVDLTGK-----WSKILLYDPIRDLVYCSNWISEDISVIDRKT-KLEIR----KTDK-IGL  255 (433)
T ss_dssp             EGGGTEEEEEETTTCCEEEEEECSSS-----SEEEEEEETTTTEEEEEETTTTEEEEEETTT-TEEEE----ECCC-CSE
T ss_pred             ECCCCEEEEEECCCceEEEEEcCCCC-----CeeEEEEcCCCCEEEEEecCCCcEEEEECCC-CcEEE----EecC-CCC
Confidence            99999999999999988888875444     789999999999886 554 89999999986 44443    2333 355


Q ss_pred             eEEEEEcCCCCcEEEEee--------cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEE-eeecCCCeEEEEEc
Q psy2305         161 VSAIAINPVHPDICALGT--------YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF-SGARKDCEIICWDL  231 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~d~~i~iwd~  231 (334)
                      +.+++|+|+++ .+++++        .|+.|++||+++++.+..+. |...+.+++|+|+++.++ +++ .++.|++||+
T Consensus       256 ~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~-~~~~v~v~d~  332 (433)
T 3bws_A          256 PRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDM-CCSKIEVYDL  332 (433)
T ss_dssp             EEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEET-TTTEEEEEET
T ss_pred             ceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEec-CCCEEEEEEC
Confidence            89999999999 888777        48899999999887776653 566889999999997664 456 8999999999


Q ss_pred             cCCCccceeecccccCCceEEEEecCCCceEEeeec---------------CCcEEEEeCCCCCCCCCCCccccccccce
Q psy2305         232 RNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT---------------NGDLSIWNVNTSNLPSSPYEESVQEPLYK  296 (334)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  296 (334)
                      .+ ++....+.   ....+.+++|+|+|++|++++.               ||.|++||+.++            +.+..
T Consensus       333 ~~-~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~------------~~~~~  396 (433)
T 3bws_A          333 KE-KKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD------------TVKEF  396 (433)
T ss_dssp             TT-TEEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT------------EEEEE
T ss_pred             CC-CcEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC------------cEEEE
Confidence            87 66555554   2456788999999998888776               579999999987            56666


Q ss_pred             ecccccccceeeeccCCCcccceeeEEeeec-ceeeee
Q psy2305         297 FSAHQDCTNGVRWKHHKFERDLLVADATCSG-QITNVK  333 (334)
Q Consensus       297 ~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~-d~~i~~  333 (334)
                      +.. ...+.+++|  +|++    ++|++++. |+.+++
T Consensus       397 ~~~-~~~~~~~~~--s~dg----~~l~~~~~~d~~i~v  427 (433)
T 3bws_A          397 WEA-GNQPTGLDV--SPDN----RYLVISDFLDHQIRV  427 (433)
T ss_dssp             EEC-SSSEEEEEE--CTTS----CEEEEEETTTTEEEE
T ss_pred             ecC-CCCCceEEE--cCCC----CEEEEEECCCCeEEE
Confidence            655 456899999  9999    99888775 998875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=9.3e-34  Score=237.69  Aligned_cols=241  Identities=11%  Similarity=-0.013  Sum_probs=195.1

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe---eeEEEcCccccccccceeEEEEcCCCC-EEEEee
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE---IKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF  131 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~  131 (334)
                      .|.+.|.+++|       +|++++|++++.|+.|++|++.+++   ....+..+..     .|.+++|+|+++ +|++++
T Consensus         9 ~h~~~v~~~~~-------s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~   76 (342)
T 1yfq_A            9 APKDYISDIKI-------IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             CCSSCEEEEEE-------EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEEEE
T ss_pred             CCCCcEEEEEE-------cCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCC-----ceEEEEECCCCCcEEEEEc
Confidence            57788999888       5689999999999999999998776   2333333333     899999999999 999887


Q ss_pred             -CCcEEEEEc-CCCCCeeeeecccccc--cccceEEEEEcCCCCcEEEEeecCCeEEEEECCC---------CCceEeec
Q psy2305         132 -LSEVKIFST-DRPGRECVSRNLKPWF--RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD---------GRPLFFLK  198 (334)
Q Consensus       132 -d~~i~i~d~-~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~  198 (334)
                       |+.|++||+ .. +.. .    .+..  |...|.+++|+| +. ++++++.|+.|++||+++         ++++..+.
T Consensus        77 ~dg~i~~wd~~~~-~~~-~----~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  148 (342)
T 1yfq_A           77 VQGEILKVDLIGS-PSF-Q----ALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK  148 (342)
T ss_dssp             TTSCEEEECSSSS-SSE-E----ECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred             CCCeEEEEEeccC-Cce-E----eccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence             999999999 75 333 3    4667  999999999999 77 999999999999999988         77777777


Q ss_pred             cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC-CCccceeecccccCCceEEEEecC-CCceEEeeecCCcEEEEeC
Q psy2305         199 GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN-PGCILHTFPRQVSTNQRVYFDLTS-CSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       199 ~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~  276 (334)
                       |...|.+++|+|++  +++++ .|+.|++||++. ......... ......+.+++|+| +++++++++.||.|++|++
T Consensus       149 -~~~~v~~~~~~~~~--l~~~~-~d~~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~  223 (342)
T 1yfq_A          149 -VKNKIFTMDTNSSR--LIVGM-NNSQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF  223 (342)
T ss_dssp             -SCCCEEEEEECSSE--EEEEE-STTEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred             -eCCceEEEEecCCc--EEEEe-CCCeEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence             88999999999987  88888 899999999986 333222222 22356788999999 9999999999999999999


Q ss_pred             CCCCCCCCCCccccccccceeccccc---------ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         277 NTSNLPSSPYEESVQEPLYKFSAHQD---------CTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ......      ...+....+..|..         .|.+++|  +|++    ++|++++.||.|++
T Consensus       224 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~----~~l~~~~~dg~i~v  277 (342)
T 1yfq_A          224 DDQGDD------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEF--SPRH----KFLYTAGSDGIISC  277 (342)
T ss_dssp             CTTCCS------TTCTTCEEEECCCCCTTCCSSCCCEEEEEE--CTTT----CCEEEEETTSCEEE
T ss_pred             cCCCcc------cccccceeeecccccccccccceeEEEEEE--cCCC----CEEEEecCCceEEE
Confidence            875000      00034556666644         8999999  9999    99999999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=3.4e-33  Score=242.04  Aligned_cols=229  Identities=17%  Similarity=0.229  Sum_probs=189.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++|  ++++|++|+.||.|++||+.+++..              ..+. .|...|.+++|         ++.+++
T Consensus       174 ~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~--------------~~~~-~h~~~v~~l~~---------~~~~l~  227 (435)
T 1p22_A          174 GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML--------------NTLI-HHCEAVLHLRF---------NNGMMV  227 (435)
T ss_dssp             SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE--------------EEEC-CCCSCEEEEEC---------CTTEEE
T ss_pred             CcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE--------------EEEc-CCCCcEEEEEE---------cCCEEE
Confidence            46888888  7889999999999999999998865              3444 35678888877         345899


Q ss_pred             EeeCCCcEEEEeCCCCeee---EEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIK---ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +++.||.|++||+.+++..   ..+..+..     .|.+++|  ++++|++++ |+.|++||+++ ++...    .+.+|
T Consensus       228 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~--~~~~l~s~~~dg~i~vwd~~~-~~~~~----~~~~~  295 (435)
T 1p22_A          228 TCSKDRSIAVWDMASPTDITLRRVLVGHRA-----AVNVVDF--DDKYIVSASGDRTIKVWNTST-CEFVR----TLNGH  295 (435)
T ss_dssp             EEETTSCEEEEECSSSSCCEEEEEECCCSS-----CEEEEEE--ETTEEEEEETTSEEEEEETTT-CCEEE----EEECC
T ss_pred             EeeCCCcEEEEeCCCCCCceeeeEecCCCC-----cEEEEEe--CCCEEEEEeCCCeEEEEECCc-CcEEE----EEcCC
Confidence            9999999999999887655   44554443     8899998  678999887 99999999997 55555    57789


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc-
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC-  236 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~-  236 (334)
                      ...|.++.++  +. ++++|+.||.|++||+++++++..+.+|...|.+++|  ++++|++++ .||.|++||++. +. 
T Consensus       296 ~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~-~~~  368 (435)
T 1p22_A          296 KRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVA-ALD  368 (435)
T ss_dssp             SSCEEEEEEE--TT-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHH-HTS
T ss_pred             CCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCC-CCC
Confidence            9999999995  45 9999999999999999999999999999999999999  788999999 899999999976 32 


Q ss_pred             --------cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         237 --------ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       237 --------~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                              .+..+..|  ...+.+++|  ++++|++++.||.|++||+.+.
T Consensus       369 ~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          369 PRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             TTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred             ccccccchheeeccCC--CCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence                    45566655  556777877  7889999999999999999886

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1e-32  Score=223.65  Aligned_cols=261  Identities=11%  Similarity=0.069  Sum_probs=179.3

Q ss_pred             eeEEEEcCCCc---EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEec------------
Q psy2305           4 EEDVDEAPDGT---CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYP------------   68 (334)
Q Consensus         4 V~~~~~sp~~~---~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------   68 (334)
                      |.++-|-.-|-   .+++++. ..|++|+..+...-           +...++.. +..+|..+.+.|            
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~  108 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQW-----------EKLYTWHF-AEVPVLQIVPVPDVYNLVCVALGN  108 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBE-----------EEEEEEEC-CSSCEEEECCCTTCCSCEEEEECS
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccc-----------eeeEEEec-cCceeEEEEEcCcccceeeeeecc
Confidence            44555644332   5677765 58999999987311           01133333 345677776655            


Q ss_pred             ------ccceecCC----CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee---CCcE
Q psy2305          69 ------KTSSIDGF----TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---LSEV  135 (334)
Q Consensus        69 ------~~~~~s~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i  135 (334)
                            +.++++|+    ++++++++.+  +.+|++                           ++++++.++.   |+.|
T Consensus       109 ~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l---------------------------~~g~lv~ss~~g~d~~V  159 (356)
T 2w18_A          109 LEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL---------------------------TKRRLVSSSGTLSDQQV  159 (356)
T ss_dssp             SSEEEEEEECC------CCEEEEEEEEE--EEEEEE---------------------------TTTEEEEEESSSTTCEE
T ss_pred             ccccceEEEEECCCccccccEEEeCCCe--EEEEec---------------------------CCCcEEEecccCCCCcE
Confidence                  23455666    6666665532  445543                           3444455432   7888


Q ss_pred             EEEEcCCCCCeeeeecccccccccceEEEEEcC---CCCcEEEEeecCCeEEEEECCCCCceEeeccCC---CCeEEEEE
Q psy2305         136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINP---VHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN---GGITHLEF  209 (334)
Q Consensus       136 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~i~~~~~  209 (334)
                      ++|++...++.+.    ....|...++.++|+|   ++. +|++++.|++|+|||++++++++++.+|.   ..+.+++|
T Consensus       160 ~~~~~s~dG~~~~----s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf  234 (356)
T 2w18_A          160 EVMTFAEDGGGKE----NQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY  234 (356)
T ss_dssp             EEEEECTTSCEEE----EEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred             EEEEECCCCceee----eeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence            8888865455554    4678888899999999   667 99999999999999999999999998654   36778899


Q ss_pred             ccCCcEE------------EeeecCCCeEEEEEccCCCccceeec---ccccCCceEEEEecCCCceEEeeecCCcEEEE
Q psy2305         210 SSNGILL------------FSGARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW  274 (334)
Q Consensus       210 ~~~~~~l------------~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iw  274 (334)
                      +|+|+++            ++|+ .|++|++||..+ ++.+..+.   ...+.....+..+  ++.++++++.|++|+||
T Consensus       235 SpdG~~lvs~s~~~~~w~laSGs-~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIW  310 (356)
T 2w18_A          235 SEMGLLFIVLSHPCAKESESLRS-PVFQLIVINPKT-TLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIW  310 (356)
T ss_dssp             EETTEEEEEEC-------------CCEEEEEEETTT-TEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEE
T ss_pred             CCCCCEEEEeccCCCcceeeccC-CCcEEEEEECCC-CEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEE
Confidence            9999976            5577 799999999987 66554432   1111222333333  37889999999999999


Q ss_pred             eCCCCCCCCCCCccccccccceecccccccc-eeeeccCCCcccceeeEEeeecceeeee
Q psy2305         275 NVNTSNLPSSPYEESVQEPLYKFSAHQDCTN-GVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       275 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |+.++            +.+.++.+|...+. .++|  +||+    ++|++|+.|++|++
T Consensus       311 Dl~tG------------k~l~tL~gH~~~vvs~vaf--SPDG----~~LaSGS~D~TIkl  352 (356)
T 2w18_A          311 DLLLG------------QCTALLPPVSDQHWSFVKW--SGTD----SHLLAGQKDGNIFV  352 (356)
T ss_dssp             ETTTC------------SEEEEECCC--CCCCEEEE--CSSS----SEEEEECTTSCEEE
T ss_pred             ECCCC------------cEEEEecCCCCCeEEEEEE--CCCC----CEEEEEECCCcEEE
Confidence            99998            78889999987665 5899  9999    99999999999986

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.2e-31  Score=228.99  Aligned_cols=259  Identities=11%  Similarity=0.071  Sum_probs=205.9

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE-EEeeCCCcEEEE
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF-LCSSMYAPIHLW   92 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l-~~~~~d~~i~iw   92 (334)
                      ..+++++.|+.|++||+.+++..              ..+.. + ..+.+++|       +|++++| ++++.|+.|++|
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~--------------~~~~~-~-~~~~~~~~-------s~dg~~l~~~~~~d~~i~v~   59 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVT--------------ATIPV-G-SNPMGAVI-------SPDGTKVYVANAHSNDVSII   59 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEE--------------EEEEC-S-SSEEEEEE-------CTTSSEEEEEEGGGTEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEE--------------EEeec-C-CCcceEEE-------CCCCCEEEEECCCCCeEEEE
Confidence            46788889999999999988765              23332 2 34666666       7799876 667789999999


Q ss_pred             eCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEE-ee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCC
Q psy2305          93 DSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA-GF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVH  170 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  170 (334)
                      |+.+++.+..+..+.      .+.+++|+|++++|++ +. ++.|++||+.+ ++...    .+. +...+.+++|+|++
T Consensus        60 d~~~~~~~~~~~~~~------~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~-~~~~~----~~~-~~~~~~~~~~s~dg  127 (391)
T 1l0q_A           60 DTATNNVIATVPAGS------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVAG----TVK-TGKSPLGLALSPDG  127 (391)
T ss_dssp             ETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEE----EEE-CSSSEEEEEECTTS
T ss_pred             ECCCCeEEEEEECCC------CccceEECCCCCEEEEEECCCCEEEEEECCC-CeEEE----EEe-CCCCcceEEECCCC
Confidence            999999988876543      7899999999998864 44 79999999986 44433    223 34578999999999


Q ss_pred             CcEE-EEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEE-eeecCCCeEEEEEccCCCccceeecccccCC
Q psy2305         171 PDIC-ALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF-SGARKDCEIICWDLRNPGCILHTFPRQVSTN  248 (334)
Q Consensus       171 ~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  248 (334)
                      + .+ ++++.++.|++||+++++.+..+..+ ..+.+++|+|++++|+ +++ .++.|++||+++ ++....+..   ..
T Consensus       128 ~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~-~~~~v~~~d~~~-~~~~~~~~~---~~  200 (391)
T 1l0q_A          128 K-KLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF-DSMSISVIDTVT-NSVIDTVKV---EA  200 (391)
T ss_dssp             S-EEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET-TTTEEEEEETTT-TEEEEEEEC---SS
T ss_pred             C-EEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC-CCCEEEEEECCC-CeEEEEEec---CC
Confidence            9 55 78888999999999999888888755 4579999999999884 556 789999999987 555555542   44


Q ss_pred             ceEEEEecCCCceEEeee---cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeE-Ee
Q psy2305         249 QRVYFDLTSCSNYLLSGN---TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVAD-AT  324 (334)
Q Consensus       249 ~~~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l-~t  324 (334)
                      .+.+++|+|++++|++++   .++.|++||+.++            +.+..+..|. .+..++|  +|++    ++| ++
T Consensus       201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~-~~~~~~~--s~dg----~~l~~s  261 (391)
T 1l0q_A          201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN------------KITARIPVGP-DPAGIAV--TPDG----KKVYVA  261 (391)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT------------EEEEEEECCS-SEEEEEE--CTTS----SEEEEE
T ss_pred             CccceEECCCCCEEEEEecCcCCCcEEEEECCCC------------eEEEEEecCC-CccEEEE--ccCC----CEEEEE
Confidence            677899999999999887   6899999999987            5666666654 4789999  9999    876 67


Q ss_pred             eecceeeee
Q psy2305         325 CSGQITNVK  333 (334)
Q Consensus       325 ~~~d~~i~~  333 (334)
                      ++.|+.+++
T Consensus       262 ~~~d~~v~v  270 (391)
T 1l0q_A          262 LSFXNTVSV  270 (391)
T ss_dssp             ETTTTEEEE
T ss_pred             cCCCCEEEE
Confidence            788988864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-32  Score=236.78  Aligned_cols=240  Identities=11%  Similarity=-0.054  Sum_probs=191.2

Q ss_pred             ceeEEEEcCCCcEE-EEeeCCCeEEEEECC--CCCceeeeeCCCCCCCCcceeeee-eeceeEEEEEEecccceecCCCc
Q psy2305           3 IEEDVDEAPDGTCL-LTNSNDNHLRTFDLP--SELHCKSVWRPSNQRPKLNYTLKI-KEGGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         3 ~V~~~~~sp~~~~l-~~~~~d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      .|++++|+|+|++| ++++.||.|++|++.  +++..              ..+.. .+...|.+++|       +|+++
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~--------------~~~~~~~~~~~v~~~~~-------sp~~~  162 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL--------------KLRKRFCFSKRPNAISI-------AEDDT  162 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE--------------EEEEEEECSSCEEEEEE-------CTTSS
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee--------------eeeecccCCCCceEEEE-------cCCCC
Confidence            69999999999996 899999999999998  66654              34432 34567888877       77999


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeE----EEcCccccccccceeEEEEcCC---CCEEEEee-CCcEEEEEcCCCCCeeeee
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKA----TYRPYNQVDEVTHAYSLAFSLD---GNKIYAGF-LSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~  150 (334)
                      +|++++.++.|++|++.+++...    .+..+..     .|++++|+|+   +++|++++ |+.|++||+.+ +..+.. 
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~-  235 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVS-----MLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDK-  235 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSS-----CEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEE-
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccC-----ceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Cceeee-
Confidence            99999999999999998776543    3333332     8999999999   99999988 99999999987 554442 


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc-------------------------CCCCeE
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG-------------------------HNGGIT  205 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------------~~~~i~  205 (334)
                        ...+|...|.+++|+ +++ +|++++.|+.|++||+++++.+..+..                         ....|.
T Consensus       236 --~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          236 --WLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             --ECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             --eecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence              356899999999999 998 999999999999999999998887752                         235789


Q ss_pred             EEEEccCCcEEEeeecCCCeEEEEEc--cCCC---ccceeecccccCCceEEEEecCCCceEEeeec------CCcEEEE
Q psy2305         206 HLEFSSNGILLFSGARKDCEIICWDL--RNPG---CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT------NGDLSIW  274 (334)
Q Consensus       206 ~~~~~~~~~~l~~~~~~d~~i~iwd~--~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~------dg~i~iw  274 (334)
                      +++|+|++++|+++++.++.|++|++  .. +   ..+..+..+   ..+.+++|+|++.++++++.      +..|.+|
T Consensus       312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQ-KGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             EEEECSSSSEEEEEETTCSEEEEEEECSSS-TTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEeccCC-CCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence            99999999999988756999999999  43 3   334444443   67889999996555555443      4558888


Q ss_pred             eCCC
Q psy2305         275 NVNT  278 (334)
Q Consensus       275 d~~~  278 (334)
                      .+..
T Consensus       388 ~~~~  391 (450)
T 2vdu_B          388 EYNL  391 (450)
T ss_dssp             EEET
T ss_pred             EEEc
Confidence            7654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-33  Score=233.57  Aligned_cols=230  Identities=8%  Similarity=-0.030  Sum_probs=179.7

Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCC------
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRP------  143 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~------  143 (334)
                      ..+.+++++|++|+.||.|++||+.+++.+..+..  .     .|.++.|+|+   +++++ |+.|++|+....      
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~--~-----~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~  111 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITT--P-----NPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDS  111 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEE--E-----CCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEET
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEec--C-----CceeeeeCCc---eEEecCCCeEEEEEccCceEEeec
Confidence            34456889999999999999999999988877761  2     6788889998   77776 999999987621      


Q ss_pred             --CCeeeeecccccccccceEEEEEcC--CCCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEccCCcEEEe
Q psy2305         144 --GRECVSRNLKPWFRKNIVSAIAINP--VHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       144 --~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~  218 (334)
                        +..+..   ...+|...|.+++|+|  +++ ++++++.||.|++||+++++...... .+...+.+++|+|++++|++
T Consensus       112 ~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~las  187 (343)
T 3lrv_A          112 KTNKVLRE---IEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLAL  187 (343)
T ss_dssp             TTCCEEEE---EECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEE
T ss_pred             CCcceeEE---eecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEE
Confidence              221221   2335668899999999  999 99999999999999999998876663 35568999999999999999


Q ss_pred             eecCCCeEEEEEccCCCccc-eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee
Q psy2305         219 GARKDCEIICWDLRNPGCIL-HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF  297 (334)
Q Consensus       219 ~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  297 (334)
                      |+ .|+.|++||+++ +... ..+.. .+...+.+++|+|++.+|++++ ++.|++||+++.+..         ..+..+
T Consensus       188 g~-~dg~i~iwd~~~-~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~---------~~~~~~  254 (343)
T 3lrv_A          188 YS-PDGILDVYNLSS-PDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT---------LAYPTY  254 (343)
T ss_dssp             EC-TTSCEEEEESSC-TTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC---------BSSCCC
T ss_pred             Ec-CCCEEEEEECCC-CCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc---------eeeccc
Confidence            99 899999999998 5544 66665 1367899999999999999999 559999999987432         223333


Q ss_pred             cccccccc--eeeeccCCCcccceeeEEeeec-ceeeee
Q psy2305         298 SAHQDCTN--GVRWKHHKFERDLLVADATCSG-QITNVK  333 (334)
Q Consensus       298 ~~~~~~i~--~~~~~~s~~~~~~~~~l~t~~~-d~~i~~  333 (334)
                      ..|...+.  +++|  +|++    ++|++++. |+.+++
T Consensus       255 ~~~~~~~~~~~~~~--~~~g----~~l~~~s~~d~~i~v  287 (343)
T 3lrv_A          255 TIPEFKTGTVTYDI--DDSG----KNMIAYSNESNSLTI  287 (343)
T ss_dssp             BC-----CCEEEEE--CTTS----SEEEEEETTTTEEEE
T ss_pred             ccccccccceEEEE--CCCC----CEEEEecCCCCcEEE
Confidence            33444555  5999  9999    99999888 887765

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=3.3e-33  Score=238.78  Aligned_cols=247  Identities=8%  Similarity=-0.097  Sum_probs=169.1

Q ss_pred             EcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccce-ecCCCcEEEEeeCCC
Q psy2305           9 EAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSS-IDGFTSYFLCSSMYA   87 (334)
Q Consensus         9 ~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~s~~~~~l~~~~~d~   87 (334)
                      +++++.+||+++.|++|+|||..+++.....         ....+ .+|.+.|++++|+|.... ...++++|++++.|+
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~---------~~~~~-~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQH---------VLGGK-SGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEE---------EECTT-TSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceee---------eeccc-CCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            3446678999999999999999887653100         00112 246789999999773222 123789999999999


Q ss_pred             cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCC-EEEEee-CCcEEEEEcCCCCCeeeeec--------------
Q psy2305          88 PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN-KIYAGF-LSEVKIFSTDRPGRECVSRN--------------  151 (334)
Q Consensus        88 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~--------------  151 (334)
                      +|+|||+.++.....+..+..     .|.+++|+|++. +|++++ |+.|++||+.+. +......              
T Consensus       167 tv~~Wd~~~~~~~~~~~~~~~-----~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~-~~~~~~~~~~~~~~~~~~s~~  240 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGYPLSS-----PGISVQFRPSNPNQLIVGERNGNIRIFDWTLN-LSAEENSQTELVKNPWLLTLN  240 (393)
T ss_dssp             EEEEEEEETTEEEEEEEECSS-----CEEEEEEETTEEEEEEEEETTSEEEEEETTCC-C----------CSCCCSEEEE
T ss_pred             eEEEEECCCCceeeeecCCCC-----CcEEEEECCCCCceEEecCCCCEEEEEECCCC-cccccccccCCcccceEEecc
Confidence            999999988877666655444     899999999875 677887 999999999863 2211100              


Q ss_pred             -------ccccccccceEEEEEc-CCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEcc------------
Q psy2305         152 -------LKPWFRKNIVSAIAIN-PVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSS------------  211 (334)
Q Consensus       152 -------~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~------------  211 (334)
                             ....+|...+.++.|+ |+++ .+++++.|+++++||+..++....+..|...+..+.+.|            
T Consensus       241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (393)
T 4gq1_A          241 TLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL  319 (393)
T ss_dssp             SGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS
T ss_pred             cccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce
Confidence                   0234677889999987 7888 999999999999999988877766666655554443333            


Q ss_pred             --------CCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305         212 --------NGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN  277 (334)
Q Consensus       212 --------~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  277 (334)
                              ++.++++++ .|+.|++||+.+ +.....+..+  ...+.+++|+|+|++||+++.+| +.+|.+.
T Consensus       320 ~~~~~~~~~~~~~~sgs-~Dg~V~lwd~~~-~~~~~~~~~~--~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          320 GACPHPRYMDYFATAHS-QHGLIQLINTYE-KDSNSIPIQL--GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             CCEECSSCTTEEEEEET-TTTEEEEEETTC-TTCCEEEEEC--SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             eEEEccCCCCEEEEEEC-CCCEEEEEECCC-CcEEEEecCC--CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence                    334667777 899999999997 5555555554  56799999999999999998766 6666654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.3e-32  Score=227.48  Aligned_cols=242  Identities=14%  Similarity=0.099  Sum_probs=194.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|.+++|+|++++|++++.||.|++||+.+++..               . ...|...|.+++|.|     ++++++|+
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---------------~-~~~~~~~v~~~~~~~-----~~~~~~l~  145 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI---------------Q-IAQHDAPVKTIHWIK-----APNYSCVM  145 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE---------------E-EEECSSCEEEEEEEE-----CSSCEEEE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCce---------------e-eccccCceEEEEEEe-----CCCCCEEE
Confidence            46999999999999999999999999999988764               2 234678899998865     67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.|+.|++||+.+++.+..+..+.      .+.++.+.++  .++++. ++.+.+|+++........   ....+...
T Consensus       146 ~~~~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~  214 (368)
T 3mmy_A          146 TGSWDKTLKFWDTRSSNPMMVLQLPE------RCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRR---IESPLKHQ  214 (368)
T ss_dssp             EEETTSEEEEECSSCSSCSEEEECSS------CEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEE---CCCSCSSC
T ss_pred             EccCCCcEEEEECCCCcEEEEEecCC------CceEEEecCC--eeEEEeCCCcEEEEEeccccchhhh---ccccccCC
Confidence            99999999999999999888887644      5666666644  566555 999999999874333332   22334455


Q ss_pred             eEEEEEcCCCC---cEEEEeecCCeEEEEECCCC---CceEeeccCCC------------CeEEEEEccCCcEEEeeecC
Q psy2305         161 VSAIAINPVHP---DICALGTYSKIIGLFSDSDG---RPLFFLKGHNG------------GITHLEFSSNGILLFSGARK  222 (334)
Q Consensus       161 v~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~~  222 (334)
                      +.++.+.++..   ..+++++.||.|++||++..   +.+..+.+|..            .|.+++|+|++++|++++ .
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~  293 (368)
T 3mmy_A          215 HRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-S  293 (368)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE-T
T ss_pred             CceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc-c
Confidence            66666665554   13999999999999999887   55677777765            799999999999999999 8


Q ss_pred             CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ||.|++||+++ +..+..+..|  ...+.+++|+|+|++|++++.|+..+.|++...
T Consensus       294 dg~i~iwd~~~-~~~~~~~~~~--~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          294 DGRFSFWDKDA-RTKLKTSEQL--DQPISACCFNHNGNIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             TSCEEEEETTT-TEEEEECCCC--SSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred             CCeEEEEECCC-CcEEEEecCC--CCCceEEEECCCCCeEEEEecccccccccccCC
Confidence            99999999997 7777777765  678999999999999999999987666665543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.9e-30  Score=221.69  Aligned_cols=236  Identities=14%  Similarity=0.088  Sum_probs=188.6

Q ss_pred             ceeEEEEcCCCcEE-EEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGTCL-LTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l-~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .+.+++|+|+|++| ++++.|+.|++||+.+++..              ..+..  ...+.+++|       +|++++|+
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~--------------~~~~~--~~~v~~~~~-------spdg~~l~   89 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--------------ATVPA--GSSPQGVAV-------SPDGKQVY   89 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--------------EEEEC--SSSEEEEEE-------CTTSSEEE
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--------------EEEEC--CCCccceEE-------CCCCCEEE
Confidence            47899999999977 66778999999999988765              23332  236777777       77998775


Q ss_pred             E-eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEE-EEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          82 C-SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI-YAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        82 ~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      + ++.++.|++||+.+++.+..+..+.      .+.+++|+|+++.| ++++ ++.|++||+.+ ++...    .+..+ 
T Consensus        90 ~~~~~~~~v~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~----~~~~~-  157 (391)
T 1l0q_A           90 VTNMASSTLSVIDTTSNTVAGTVKTGK------SPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVIN----TVSVG-  157 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEE----EEECC-
T ss_pred             EEECCCCEEEEEECCCCeEEEEEeCCC------CcceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEE----EEecC-
Confidence            5 4567999999999999888776533      68999999999988 4666 89999999986 44443    23333 


Q ss_pred             cceEEEEEcCCCCcEE-EEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec--CCCeEEEEEccCCC
Q psy2305         159 NIVSAIAINPVHPDIC-ALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR--KDCEIICWDLRNPG  235 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~~i~iwd~~~~~  235 (334)
                      ..+.+++|+|+++ .+ ++++.++.|++||+++++.+..+. +...+.+++|+|++++|++++.  .++.|++||+++ +
T Consensus       158 ~~~~~~~~~~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~-~  234 (391)
T 1l0q_A          158 RSPKGIAVTPDGT-KVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-N  234 (391)
T ss_dssp             SSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT-T
T ss_pred             CCcceEEECCCCC-EEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC-C
Confidence            5579999999998 55 677889999999999988877776 5567899999999999998873  389999999987 6


Q ss_pred             ccceeecccccCCceEEEEecCCCceE-EeeecCCcEEEEeCCCC
Q psy2305         236 CILHTFPRQVSTNQRVYFDLTSCSNYL-LSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~  279 (334)
                      +.+..+..+   ..+.+++|+|++++| ++++.|+.|++||+.++
T Consensus       235 ~~~~~~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          235 KITARIPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             EEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eEEEEEecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence            666666543   346789999999887 56678999999999987

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-31  Score=230.19  Aligned_cols=226  Identities=9%  Similarity=0.018  Sum_probs=174.9

Q ss_pred             ceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeee-----------------------------EEEcCccc
Q psy2305          58 GGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK-----------------------------ATYRPYNQ  108 (334)
Q Consensus        58 ~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~-----------------------------~~~~~~~~  108 (334)
                      ...|.+++|       +|||+++|+++.|++|+  |.+.++.+                             ..+.. .+
T Consensus        15 ~~~v~sv~~-------SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~-~~   84 (588)
T 2j04_A           15 EDWKNNLTW-------ARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS-QP   84 (588)
T ss_dssp             SSSSCCEEE-------CTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT-SC
T ss_pred             hccEEEEEE-------CCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeec-CC
Confidence            356666666       78999999999999996  44333311                             11110 11


Q ss_pred             cccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc-----ceEEEEEcCCCCcEEEEeecCCe
Q psy2305         109 VDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN-----IVSAIAINPVHPDICALGTYSKI  182 (334)
Q Consensus       109 ~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg~  182 (334)
                         ...|.+++|+|+|+.|++++ ||.|++||..  + .+.    .+. |..     .+.+++|+|+|+ +|++|+.||+
T Consensus        85 ---~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~--~-~l~----~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~DGt  152 (588)
T 2j04_A           85 ---VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN--K-MLT----NLD-SKGNLSSRTYHCFEWNPIES-SIVVGNEDGE  152 (588)
T ss_dssp             ---SCCEEEEEECSSSSCEEEEETTSCEEEEETT--E-EEE----ECC-CSSCSTTTCEEEEEECSSSS-CEEEEETTSE
T ss_pred             ---CCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--c-eee----ecc-CCCccccccEEEEEEcCCCC-EEEEEcCCCE
Confidence               23799999999999999988 9999999954  2 332    334 554     599999999999 9999999999


Q ss_pred             EEEEECCCCCc-------eEee----ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc---ceeec-ccccC
Q psy2305         183 IGLFSDSDGRP-------LFFL----KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI---LHTFP-RQVST  247 (334)
Q Consensus       183 i~i~d~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~---~~~~~-~~~~~  247 (334)
                      |++||+.+++.       +.++    .+|...|.+++|+|+|  +++++ .|+++++||+.. +..   ..++. .|  .
T Consensus       153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass-~D~tVrlWd~~~-~~~~~~~~tL~~~h--~  226 (588)
T 2j04_A          153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL-SNNSVFSMTVSA-SSHQPVSRMIQNAS--R  226 (588)
T ss_dssp             EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE-TTCCEEEECCCS-SSSCCCEEEEECCC--S
T ss_pred             EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe-CCCeEEEEECCC-Cccccceeeecccc--c
Confidence            99999988753       5666    6778899999999999  77888 799999999986 332   23453 33  5


Q ss_pred             CceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeec
Q psy2305         248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       248 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                      ..+.+++|+  |+.||+++ ++.|++||+.++            +......+|.+.|.+++|-.+|++    ..|+++++
T Consensus       227 ~~V~svaFs--g~~LASa~-~~tIkLWd~~~~------------~~~~~~~gh~~~V~~va~~~s~d~----~~La~a~e  287 (588)
T 2j04_A          227 RKITDLKIV--DYKVVLTC-PGYVHKIDLKNY------------SISSLKTGSLENFHIIPLNHEKES----TILLMSNK  287 (588)
T ss_dssp             SCCCCEEEE--TTEEEEEC-SSEEEEEETTTT------------EEEEEECSCCSCCCEEEETTCSSC----EEEEECSS
T ss_pred             CcEEEEEEE--CCEEEEEe-CCeEEEEECCCC------------eEEEEEcCCCceEEEEEeeeCCCC----CEEEEEcC
Confidence            678889998  68898887 699999999986            342333379999999998556888    89999999


Q ss_pred             cee
Q psy2305         328 QIT  330 (334)
Q Consensus       328 d~~  330 (334)
                      ||+
T Consensus       288 dG~  290 (588)
T 2j04_A          288 TSY  290 (588)
T ss_dssp             CEE
T ss_pred             CCC
Confidence            998

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=4.8e-31  Score=213.92  Aligned_cols=185  Identities=12%  Similarity=0.125  Sum_probs=143.7

Q ss_pred             CCcEEEEee--CCCcEEEEeC-CCCeeeEEEcCccccccccceeEEEEcC---CCCEEEEee-CCcEEEEEcCCCCCeee
Q psy2305          76 FTSYFLCSS--MYAPIHLWDS-VGGEIKATYRPYNQVDEVTHAYSLAFSL---DGNKIYAGF-LSEVKIFSTDRPGRECV  148 (334)
Q Consensus        76 ~~~~l~~~~--~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~-d~~i~i~d~~~~~~~~~  148 (334)
                      +++++.+++  .|+.|++|++ .+|+.+..+..+..     .+..++|+|   ++..|++++ |++|++||+.+ ++.+.
T Consensus       144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~-----~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-Gk~l~  217 (356)
T 2w18_A          144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPP-----EETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-GQLLK  217 (356)
T ss_dssp             TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCC-----SSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred             CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCC-----ceeeEEeeccCCCCceEEEecCCCcEEEEECCC-CcEEE
Confidence            566666643  6999999999 45887777776655     788999999   779999988 99999999998 66666


Q ss_pred             eeccccccc---ccceEEEEEcCCCCcEE------------EEeecCCeEEEEECCCCCceEee-----ccCCCCeEEEE
Q psy2305         149 SRNLKPWFR---KNIVSAIAINPVHPDIC------------ALGTYSKIIGLFSDSDGRPLFFL-----KGHNGGITHLE  208 (334)
Q Consensus       149 ~~~~~~~~~---~~~v~~~~~~~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~i~~~~  208 (334)
                          .+.+|   ...+.+++|+|+|. ++            ++|+.|++|++||..+++.+..+     .+|...+.+..
T Consensus       218 ----tL~g~~~~v~~v~~vafSpdG~-~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~  292 (356)
T 2w18_A          218 ----KMHIDDSYQASVCHKAYSEMGL-LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD  292 (356)
T ss_dssp             ----EEECCC---CCCEEEEEEETTE-EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE
T ss_pred             ----EEcCCCcceeeeEEEEECCCCC-EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc
Confidence                34443   34677889999998 65            56888999999999999887665     36666655444


Q ss_pred             EccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305         209 FSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       209 ~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  276 (334)
                      ++  +.++++++ .|++|+|||+.+ ++.+.++.+|.. ..+..++|+|+|++|++|+.|++|+|||+
T Consensus       293 ~s--g~~lASgS-~DgTIkIWDl~t-Gk~l~tL~gH~~-~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          293 VK--DHCAAAIL-TSGTIAIWDLLL-GQCTALLPPVSD-QHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EE--TTEEEEEE-TTSCEEEEETTT-CSEEEEECCC---CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cC--CCEEEEEc-CCCcEEEEECCC-CcEEEEecCCCC-CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            44  78999999 899999999998 888888887632 22335789999999999999999999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=2.1e-29  Score=218.09  Aligned_cols=237  Identities=13%  Similarity=0.128  Sum_probs=192.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|.+++|+|+++++++++.|+.|++||+.+++..              ..+. .+...+.+++|       +|+++.++
T Consensus       170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~--------------~~~~-~~~~~~~~~~~-------~~~~~~l~  227 (433)
T 3bws_A          170 GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK--------------ATVD-LTGKWSKILLY-------DPIRDLVY  227 (433)
T ss_dssp             CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE--------------EEEE-CSSSSEEEEEE-------ETTTTEEE
T ss_pred             CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE--------------EEEc-CCCCCeeEEEE-------cCCCCEEE
Confidence            36889999999999999999999999999987765              2333 34567777777       67888775


Q ss_pred             -EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee---------CCcEEEEEcCCCCCeeeeec
Q psy2305          82 -CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---------LSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        82 -~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------d~~i~i~d~~~~~~~~~~~~  151 (334)
                       +++.|+.|++||+.+++.+..+..+.      .+.+++|+|++++|++++         |+.|++||+.+ ++...   
T Consensus       228 ~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~---  297 (433)
T 3bws_A          228 CSNWISEDISVIDRKTKLEIRKTDKIG------LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK-EKLID---  297 (433)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECCCCS------EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT-TEEEE---
T ss_pred             EEecCCCcEEEEECCCCcEEEEecCCC------CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC-CcEEe---
Confidence             45579999999999998887776533      689999999999888764         67999999986 44333   


Q ss_pred             ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecC---------
Q psy2305         152 LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARK---------  222 (334)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---------  222 (334)
                        ...+...+.+++|+|+++.++++++.++.|++||+++++.+..+. +...+.+++|+|+|++|++++ .         
T Consensus       298 --~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~-~~~~~~~~~~  373 (433)
T 3bws_A          298 --TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSC-RGPNHPTEGY  373 (433)
T ss_dssp             --EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEE-CCCCCTTTCT
T ss_pred             --eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEe-cCCCcccccc
Confidence              235566889999999998456777899999999999888887776 677899999999999998887 4         


Q ss_pred             ------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeec-CCcEEEEeCCC
Q psy2305         223 ------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT-NGDLSIWNVNT  278 (334)
Q Consensus       223 ------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~  278 (334)
                            ||.|++||+.+ ++.+..+..   ...+..++|+|+|++|++++. |+.|++|+++.
T Consensus       374 ~~~g~~dg~v~~~d~~~-~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          374 LKKGLVLGKVYVIDTTT-DTVKEFWEA---GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             TSCCSSCCEEEEEETTT-TEEEEEEEC---SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ccccccceEEEEEECCC-CcEEEEecC---CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence                  46999999987 666666654   346788999999999988775 99999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.2e-29  Score=213.76  Aligned_cols=227  Identities=13%  Similarity=0.092  Sum_probs=177.8

Q ss_pred             eeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CC
Q psy2305          56 KEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LS  133 (334)
Q Consensus        56 ~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~  133 (334)
                      .|...|.+++|       +|++++|++|+.++ +++|++.+++.......  .     .+..+++.++++.++ +++ |+
T Consensus        17 ~h~~~V~~v~f-------s~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~d~   81 (355)
T 3vu4_A           17 HVSNPVTDYEF-------NQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--R-----HLSKVRMLHRTNYVAFVTGVKE   81 (355)
T ss_dssp             --CCCCCEEEE-------CTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--S-----CCCEEEECTTSSEEEEECSSTT
T ss_pred             cCCCceEEEEE-------CCCCCEEEEEcCCE-EEEEecCCcceeeeeec--C-----CeEEEEEcCCCCEEEEEECCcc
Confidence            46678888777       77999999998775 78999988766554332  1     467888999988885 455 89


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEeeccCCCCeEEEEEccC
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFLKGHNGGITHLEFSSN  212 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~  212 (334)
                      .|++||+.+ ++.+..    + .+...|.+++++++.   ++++ .++.|++||+.++ +.+..+..   +...+++++ 
T Consensus        82 ~v~iWd~~~-~~~~~~----~-~~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-  147 (355)
T 3vu4_A           82 VVHIWDDVK-KQDVSR----I-KVDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-  147 (355)
T ss_dssp             EEEEEETTT-TEEEEE----E-ECSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-
T ss_pred             EEEEEECCC-CcEEEE----E-ECCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc-
Confidence            999999986 555442    3 366789999999874   4433 4789999999988 77776664   444566777 


Q ss_pred             CcEEEe--eecCCCeEEEEEccCCC--------------cc-ceeecccccCCceEEEEecCCCceEEeeecCCc-EEEE
Q psy2305         213 GILLFS--GARKDCEIICWDLRNPG--------------CI-LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGD-LSIW  274 (334)
Q Consensus       213 ~~~l~~--~~~~d~~i~iwd~~~~~--------------~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~-i~iw  274 (334)
                       .++++  ++ .||.|++||++...              .+ +..+.+|  ...+.+++|+|+|++|++++.|++ |++|
T Consensus       148 -~~la~~sg~-~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~s~d~~~v~iw  223 (355)
T 3vu4_A          148 -GLLVYSNEF-NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATCSQDGTIIRVF  223 (355)
T ss_dssp             -TEEEEEESS-CTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred             -cEEEEeCCC-cCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence             56665  56 89999999998622              01 5666666  678999999999999999999998 9999


Q ss_pred             eCCCCCCCCCCCccccccccceec-c-cccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         275 NVNTSNLPSSPYEESVQEPLYKFS-A-HQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       275 d~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |+.++            +.+..+. + |...|.+++|  +|++    ++|++++.|+++++
T Consensus       224 d~~~~------------~~~~~~~~g~h~~~v~~~~~--s~~~----~~l~s~s~d~~v~i  266 (355)
T 3vu4_A          224 KTEDG------------VLVREFRRGLDRADVVDMKW--STDG----SKLAVVSDKWTLHV  266 (355)
T ss_dssp             ETTTC------------CEEEEEECTTCCSCEEEEEE--CTTS----CEEEEEETTCEEEE
T ss_pred             ECCCC------------cEEEEEEcCCCCCcEEEEEE--CCCC----CEEEEEECCCEEEE
Confidence            99998            6777887 5 8999999999  9999    99999999999875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=1.4e-28  Score=217.56  Aligned_cols=275  Identities=12%  Similarity=0.022  Sum_probs=208.0

Q ss_pred             EEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCC
Q psy2305           8 DEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYA   87 (334)
Q Consensus         8 ~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~   87 (334)
                      +|+|++..+++++.|++|.+||..+++..              ..+..++.  +..+++       +|++++|++++.|+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~--------------~~i~~g~~--~~~v~~-------spdg~~l~v~~~d~  200 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV--------------KVIDTGYA--VHISRM-------SASGRYLLVIGRDA  200 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEE--------------EEEECSTT--EEEEEE-------CTTSCEEEEEETTS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEE--------------EEEecCcc--cceEEE-------CCCCCEEEEECCCC
Confidence            47899999999999999999999998876              34443332  555444       88999999999999


Q ss_pred             cEEEEeC--CCCeeeEEEcCccccccccceeEEEEcC----CCCEEEEee--CCcEEEEEcCCCCCeeeeecccc-----
Q psy2305          88 PIHLWDS--VGGEIKATYRPYNQVDEVTHAYSLAFSL----DGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKP-----  154 (334)
Q Consensus        88 ~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~-----  154 (334)
                      .|.+||+  .+++.+..+....      .+..++|+|    ||++|++++  +++|.+||..+ .+.+......-     
T Consensus       201 ~V~v~D~~~~t~~~~~~i~~g~------~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~~~i~~~g~~~~~  273 (543)
T 1nir_A          201 RIDMIDLWAKEPTKVAEIKIGI------EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPKQIVSTRGMTVDT  273 (543)
T ss_dssp             EEEEEETTSSSCEEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEEEEEECCEECSSS
T ss_pred             eEEEEECcCCCCcEEEEEecCC------CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccceeecccCcccCc
Confidence            9999999  8888888776422      679999999    999999775  89999999986 55555322100     


Q ss_pred             -cccc-cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         155 -WFRK-NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       155 -~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                       .-|. ..+..+.++|+++.++++...++.|.+||+.+.+.+.  .+. +...+..+.|+|+|++|++++..+++|.+||
T Consensus       274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence             0022 3788999999888577788889999999998876544  343 5566788999999998877663689999999


Q ss_pred             ccCCCccceeecccc--cCCceEEEEecCC-CceEEeee-cCCcEEEEeCCCCCCCCCCCccccccccceecccccccce
Q psy2305         231 LRNPGCILHTFPRQV--STNQRVYFDLTSC-SNYLLSGN-TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG  306 (334)
Q Consensus       231 ~~~~~~~~~~~~~~~--~~~~~~~~~~s~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  306 (334)
                      ..+ ++++..+....  +......+ ++|+ +.+++++. .|++|.+||+.+...     .+..++.++.+..|.+.+..
T Consensus       353 ~~t-g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~-----~~~~~~~v~~l~~~g~~~~~  425 (543)
T 1nir_A          353 SKD-RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH-----PQYAWKKVAELQGQGGGSLF  425 (543)
T ss_dssp             TTT-TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC-----TTTBTSEEEEEECSCSCCCC
T ss_pred             CCC-CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC-----chhcCeEEEEEEcCCCCceE
Confidence            998 77666665321  12223334 4677 66667665 589999999988321     01113788899998888899


Q ss_pred             eeeccCCCcccceeeEEeee
Q psy2305         307 VRWKHHKFERDLLVADATCS  326 (334)
Q Consensus       307 ~~~~~s~~~~~~~~~l~t~~  326 (334)
                      +++  +|++    ++|++++
T Consensus       426 v~~--~pdg----~~l~v~~  439 (543)
T 1nir_A          426 IKT--HPKS----SHLYVDT  439 (543)
T ss_dssp             EEC--CTTC----CEEEECC
T ss_pred             EEc--CCCC----CcEEEec
Confidence            999  9999    9999987

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=2.5e-29  Score=215.97  Aligned_cols=275  Identities=12%  Similarity=0.010  Sum_probs=194.1

Q ss_pred             eeEEEEcCCCc-EEEEee----CCC----eEEEEEC--CCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccce
Q psy2305           4 EEDVDEAPDGT-CLLTNS----NDN----HLRTFDL--PSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSS   72 (334)
Q Consensus         4 V~~~~~sp~~~-~l~~~~----~d~----~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   72 (334)
                      |...+|++.|. ++++|+    .+|    .++|||+  .+++...            ...+.. +...+..+++.+....
T Consensus        65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~~d~~  131 (415)
T 2hqs_A           65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLA------------QNSYKV-NKQWLRYAGHTASDEV  131 (415)
T ss_dssp             CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEE------------EEEEEE-CGGGHHHHHHHHHHHH
T ss_pred             cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEe------------eeEEEc-ChhHHHHHHHHHHHHH
Confidence            45566777765 566776    467    8999999  8777541            112332 3333433333221000


Q ss_pred             e-------cCCCcEEEEeeCC------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC---cE
Q psy2305          73 I-------DGFTSYFLCSSMY------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS---EV  135 (334)
Q Consensus        73 ~-------s~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~---~i  135 (334)
                      +       .+.+..++.++.+      +.|++||+.. .....+..+..     .+.+++|+|||+.|++++ ++   .|
T Consensus       132 ~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~-----~v~~~~~Spdg~~la~~s~~~~~~~i  205 (415)
T 2hqs_A          132 FEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFESGRSAL  205 (415)
T ss_dssp             HHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESS-----CEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             HHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCC-----cceeeEEcCCCCEEEEEEecCCCcEE
Confidence            0       1125556665543      7999999974 44555554433     899999999999999876 54   99


Q ss_pred             EEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEE-EeecCC--eEEEEECCCCCceEeeccCCCCeEEEEEccC
Q psy2305         136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICA-LGTYSK--IIGLFSDSDGRPLFFLKGHNGGITHLEFSSN  212 (334)
Q Consensus       136 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  212 (334)
                      ++||+.+ ++..     .+..|...+.+++|+|+|+ .|+ +++.++  .|++||+++++. ..+..|...+.+++|+|+
T Consensus       206 ~~~d~~t-g~~~-----~l~~~~~~~~~~~~spdg~-~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd  277 (415)
T 2hqs_A          206 VIQTLAN-GAVR-----QVASFPRHNGAPAFSPDGS-KLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPD  277 (415)
T ss_dssp             EEEETTT-CCEE-----EEECCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTT
T ss_pred             EEEECCC-CcEE-----EeecCCCcccCEEEcCCCC-EEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCC
Confidence            9999986 4432     3456778899999999999 666 666555  499999988765 567778889999999999


Q ss_pred             CcEEEeeecCCC--eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC---CcEEEEeCCCCCCCCCCCc
Q psy2305         213 GILLFSGARKDC--EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN---GDLSIWNVNTSNLPSSPYE  287 (334)
Q Consensus       213 ~~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~  287 (334)
                      |++|++++..++  .|++||+.. +. ...+..+  ...+..++|+|+|++|++++.+   ..|++||+.++        
T Consensus       278 g~~l~~~s~~~g~~~i~~~d~~~-~~-~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~--------  345 (415)
T 2hqs_A          278 SQNLAFTSDQAGRPQVYKVNING-GA-PQRITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--------  345 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTS-SC-CEECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC--------
T ss_pred             CCEEEEEECCCCCcEEEEEECCC-CC-EEEEecC--CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC--------
Confidence            999998872245  677778875 33 3334333  4567789999999999988764   58999999986        


Q ss_pred             cccccccceecccccccceeeeccCCCcccceeeEEeeecce
Q psy2305         288 ESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQI  329 (334)
Q Consensus       288 ~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~  329 (334)
                          +. ..+..+. .+..++|  +|++    ++|++++.|+
T Consensus       346 ----~~-~~l~~~~-~~~~~~~--spdg----~~l~~~s~~~  375 (415)
T 2hqs_A          346 ----GV-QVLSSTF-LDETPSL--APNG----TMVIYSSSQG  375 (415)
T ss_dssp             ----CE-EECCCSS-SCEEEEE--CTTS----SEEEEEEEET
T ss_pred             ----CE-EEecCCC-CcCCeEE--cCCC----CEEEEEEcCC
Confidence                33 3455554 7899999  9999    9999988776

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=1.1e-27  Score=205.77  Aligned_cols=246  Identities=13%  Similarity=0.108  Sum_probs=189.5

Q ss_pred             CcEEEEeeCC------CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC
Q psy2305          13 GTCLLTNSND------NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY   86 (334)
Q Consensus        13 ~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d   86 (334)
                      +..++.++.+      +.|++||+......               .+.. +...+.+++|       +|+|+.|++++.+
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~---------------~l~~-~~~~v~~~~~-------Spdg~~la~~s~~  199 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQF---------------VVHR-SPQPLMSPAW-------SPDGSKLAYVTFE  199 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCE---------------EEEE-ESSCEEEEEE-------CTTSSEEEEEECT
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCE---------------EEeC-CCCcceeeEE-------cCCCCEEEEEEec
Confidence            5666666554      79999999865432               4443 5577888877       7799999999887


Q ss_pred             C---cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CC--cEEEEEcCCCCCeeeeeccccccccc
Q psy2305          87 A---PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LS--EVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        87 ~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +   .|++||+.+++... +..+..     .+.+++|+|||+.|+ +++ ++  .|++||+.+ ++. .    .+..|..
T Consensus       200 ~~~~~i~~~d~~tg~~~~-l~~~~~-----~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~~-~----~l~~~~~  267 (415)
T 2hqs_A          200 SGRSALVIQTLANGAVRQ-VASFPR-----HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI-R----QVTDGRS  267 (415)
T ss_dssp             TSSCEEEEEETTTCCEEE-EECCSS-----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-E----ECCCCSS
T ss_pred             CCCcEEEEEECCCCcEEE-eecCCC-----cccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CCE-E----eCcCCCC
Confidence            5   89999999887754 433332     789999999999888 554 44  499999985 333 3    4567788


Q ss_pred             ceEEEEEcCCCCcEEEEeec-CC--eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecC--CCeEEEEEccCC
Q psy2305         160 IVSAIAINPVHPDICALGTY-SK--IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARK--DCEIICWDLRNP  234 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--d~~i~iwd~~~~  234 (334)
                      .+.+++|+|+|+ .|++++. ++  .|++||+.+++. ..+..+...+.+++|+|+|++|++++..  +..|++||+.+ 
T Consensus       268 ~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-  344 (415)
T 2hqs_A          268 NNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-  344 (415)
T ss_dssp             CEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-
T ss_pred             cccceEECCCCC-EEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-
Confidence            999999999999 7877765 44  688889887764 4455577789999999999999988732  25899999986 


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEeeecCC---cEEEEeCCCCCCCCCCCccccccccceecccccccceeeecc
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG---DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKH  311 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  311 (334)
                      ++. ..+..+   ..+..++|+|+|++|++++.++   .|++||+..             .....+..|.+.|.+++|  
T Consensus       345 ~~~-~~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-------------~~~~~l~~~~~~v~~~~~--  405 (415)
T 2hqs_A          345 GGV-QVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-------------RFKARLPATDGQVKFPAW--  405 (415)
T ss_dssp             CCE-EECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-------------CCEEECCCSSSEEEEEEE--
T ss_pred             CCE-EEecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-------------CcEEEeeCCCCCCcCCcc--
Confidence            443 344433   2678899999999999888776   799999986             456778889999999999  


Q ss_pred             CCCc
Q psy2305         312 HKFE  315 (334)
Q Consensus       312 s~~~  315 (334)
                      +|..
T Consensus       406 ~~~~  409 (415)
T 2hqs_A          406 SPYL  409 (415)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9865

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=1.3e-27  Score=211.38  Aligned_cols=281  Identities=10%  Similarity=0.027  Sum_probs=204.8

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEEC--CCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC----CC
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDL--PSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG----FT   77 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~----~~   77 (334)
                      +.+++|+|||++|++++.|++|++||+  .+++..              ..+.  .+.....       ++|+|    +|
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~--------------~~i~--~g~~p~~-------va~sp~~~~dg  237 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV--------------AEIK--IGIEARS-------VESSKFKGYED  237 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--------------EEEE--CCSEEEE-------EEECCSTTCTT
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE--------------EEEe--cCCCcce-------EEeCCCcCCCC
Confidence            678999999999999999999999999  665543              2333  2233444       45589    99


Q ss_pred             cEEEEeeC-CCcEEEEeCCCCeeeEEEcCcccc------ccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeee
Q psy2305          78 SYFLCSSM-YAPIHLWDSVGGEIKATYRPYNQV------DEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECV  148 (334)
Q Consensus        78 ~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~  148 (334)
                      ++|++++. +++|.+||..+++.+..+......      .....+..+.++|++..++++ . ++.|.+||+.+ .+.+.
T Consensus       238 ~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~-~~~l~  316 (543)
T 1nir_A          238 RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD-IDNLT  316 (543)
T ss_dssp             TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT-SSSCE
T ss_pred             CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC-CCcce
Confidence            99998874 899999999999998887653210      001168899999988776654 4 89999999986 33322


Q ss_pred             eecccccccccceEEEEEcCCCCcEEE-EeecCCeEEEEECCCCCceEeecc----CCCCeEEEEEccC-CcEEEeeecC
Q psy2305         149 SRNLKPWFRKNIVSAIAINPVHPDICA-LGTYSKIIGLFSDSDGRPLFFLKG----HNGGITHLEFSSN-GILLFSGARK  222 (334)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~~~  222 (334)
                      .   ....+...+.++.|+|+|+ +++ ++..+++|.+||+.+++++..+..    |.+....+ ++|+ +..++++...
T Consensus       317 ~---~~i~~~~~~~~~~~spdg~-~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~  391 (543)
T 1nir_A          317 V---TSIGAAPFLHDGGWDSSHR-YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG  391 (543)
T ss_dssp             E---EEEECCSSCCCEEECTTSC-EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS
T ss_pred             e---EEeccCcCccCceECCCCC-EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC
Confidence            1   1223556788999999999 655 455689999999999998888764    55444343 4777 5555655424


Q ss_pred             CCeEEEEEccCC------CccceeecccccCCceEEEEecCCCceEEeee-------cCCcEEEEeCCCCCCCCCCCccc
Q psy2305         223 DCEIICWDLRNP------GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-------TNGDLSIWNVNTSNLPSSPYEES  289 (334)
Q Consensus       223 d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~  289 (334)
                      |++|.+||+.+.      .+.+.++..+  ...+..++++|+|++|++++       .+++|.+||+.+++         
T Consensus       392 d~~V~v~d~~~~~~~~~~~~~v~~l~~~--g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~---------  460 (543)
T 1nir_A          392 DGSISLIGTDPKNHPQYAWKKVAELQGQ--GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD---------  460 (543)
T ss_dssp             SSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT---------
T ss_pred             CceEEEEEeCCCCCchhcCeEEEEEEcC--CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC---------
Confidence            799999999862      3556667655  34556688999999999987       36799999999984         


Q ss_pred             ccccc-cee--------cccccccceeeeccCCCcccceeeEEeee-----cceeeee
Q psy2305         290 VQEPL-YKF--------SAHQDCTNGVRWKHHKFERDLLVADATCS-----GQITNVK  333 (334)
Q Consensus       290 ~~~~~-~~~--------~~~~~~i~~~~~~~s~~~~~~~~~l~t~~-----~d~~i~~  333 (334)
                         .. ..+        ..+...+..+.|  +|+|    +.|+++.     .|+.|++
T Consensus       461 ---~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~g----~~~~~s~~~~~~~~~~i~v  509 (543)
T 1nir_A          461 ---AKYQVLPIAEWADLGEGAKRVVQPEY--NKRG----DEVWFSVWNGKNDSSALVV  509 (543)
T ss_dssp             ---SCCEEECHHHHHCCCSSCCEEEEEEE--CSSS----SEEEEEEECCTTSCCEEEE
T ss_pred             ---CCeEEeechhhcccCCCCCceEeccC--CCCC----CEEEEEeecCCCCCCeEEE
Confidence               22 222        345668999999  9999    8877653     3677764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=1.1e-28  Score=227.75  Aligned_cols=292  Identities=11%  Similarity=-0.001  Sum_probs=198.2

Q ss_pred             ceeEEEEcCCCcEEEEeeC-CC-----eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeecee--EEEEE--Eecccce
Q psy2305           3 IEEDVDEAPDGTCLLTNSN-DN-----HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGI--IYDYV--WYPKTSS   72 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~-d~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~--~~~~~~~   72 (334)
                      .|.+++|||||++|++++. |+     .|++||+.+++........... +... .+.......  ...+.  .....++
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL-PGTE-TLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC----------------------CCEESCCCE
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc-cccc-cccchhhhhhhhhhhccccCcceeE
Confidence            5889999999999999998 88     9999999988765322111000 0000 000000000  00000  1123456


Q ss_pred             ecCCCcEEEEeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeee
Q psy2305          73 IDGFTSYFLCSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        73 ~s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~  150 (334)
                      |||||++|++++. +.|.+||+.++.  ....+..+..     .+..++|+|||++|+.++++.|++||+.+ +....  
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~-----~~~~~~~SPDG~~la~~~~~~i~~~d~~~-g~~~~--  186 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEG-----FATDAKLSPKGGFVSFIRGRNLWVIDLAS-GRQMQ--  186 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSS-----CEEEEEECTTSSEEEEEETTEEEEEETTT-TEEEE--
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCc-----ccccccCCCCCCEEEEEeCCcEEEEecCC-CCEEE--
Confidence            6899999999886 899999998872  2333443322     78999999999999998888999999985 43332  


Q ss_pred             ccccccccc----------------ceEEEEEcCCCCcEEEEeecCC---------------------------------
Q psy2305         151 NLKPWFRKN----------------IVSAIAINPVHPDICALGTYSK---------------------------------  181 (334)
Q Consensus       151 ~~~~~~~~~----------------~v~~~~~~~~~~~~l~~~~~dg---------------------------------  181 (334)
                        ....+..                .+..++|+|||+ .|++++.|+                                 
T Consensus       187 --~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~  263 (741)
T 2ecf_A          187 --LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV  263 (741)
T ss_dssp             --CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred             --eccCCccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence              1222222                147899999999 888887665                                 


Q ss_pred             eEEEEECCC-CCceEeec--cCCCCeEEEEEccCCcEEEeeec----CCCeEEEEEccCCCccceeecccccCC---ceE
Q psy2305         182 IIGLFSDSD-GRPLFFLK--GHNGGITHLEFSSNGILLFSGAR----KDCEIICWDLRNPGCILHTFPRQVSTN---QRV  251 (334)
Q Consensus       182 ~i~i~d~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~  251 (334)
                      .|++||+.+ ++......  .|...+..++| |||++|++++.    .+..|++||+.+ ++....+..+. ..   .+.
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~-~~~~~~~~  340 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHETS-PTWVPLHN  340 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CCEEEEEEEEC-SSCCCCCS
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-CceEEEEEcCC-CCcCCcCC
Confidence            899999988 77655443  36778999999 99999987651    256799999987 55544444332 11   234


Q ss_pred             EEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccccccee-eeccCCCcccceeeEEe-eecce
Q psy2305         252 YFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV-RWKHHKFERDLLVADAT-CSGQI  329 (334)
Q Consensus       252 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~s~~~~~~~~~l~t-~~~d~  329 (334)
                      .++|+|||+++++++.||.++||.+....           . ...+..|...+..+ .|  +|++    +.|+. ++.|+
T Consensus       341 ~~~~spdg~~~~~~~~~g~~~l~~~~~~~-----------~-~~~l~~~~~~v~~~~~~--s~dg----~~l~~~~~~~~  402 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERTGFQHLYRIDSKG-----------K-AAALTHGNWSVDELLAV--DEKA----GLAYFRAGIES  402 (741)
T ss_dssp             CCEECTTSCEEEEECTTSSCEEEEECSSS-----------C-EEESCCSSSCEEEEEEE--ETTT----TEEEEEECSSC
T ss_pred             ceEECCCCeEEEEecCCCccEEEEEcCCC-----------C-eeeeeecceEEEeEeEE--eCCC----CEEEEEEeCCC
Confidence            67899999999999999988888776321           4 55666677778777 59  9999    76654 44444

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.97  E-value=9.2e-28  Score=196.69  Aligned_cols=260  Identities=11%  Similarity=0.090  Sum_probs=192.5

Q ss_pred             EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCC-
Q psy2305          18 TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVG-   96 (334)
Q Consensus        18 ~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~-   96 (334)
                      .++.|+.|++||+.+++..               .+. .+...+.+++|       +|++++|++++ ++.|.+||+.+ 
T Consensus        17 ~~~~~~~i~~~d~~~~~~~---------------~~~-~~~~~v~~~~~-------spdg~~l~~~~-~~~i~~~d~~~~   72 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR---------------VVW-QTPELFEAPNW-------SPDGKYLLLNS-EGLLYRLSLAGD   72 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE---------------EEE-EESSCCEEEEE-------CTTSSEEEEEE-TTEEEEEESSSC
T ss_pred             CCCcceeEEEEeCCCCcee---------------eec-cCCcceEeeEE-------CCCCCEEEEEc-CCeEEEEeCCCC
Confidence            3467899999999988754               233 34677888777       77999999886 78999999988 


Q ss_pred             CeeeEEEcCccccccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcE
Q psy2305          97 GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDI  173 (334)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  173 (334)
                      ++.......+. .   ..+.+++|+|++++|+++.   ++...+|.++..+....    .+..+ ..+..++|+|+++ .
T Consensus        73 ~~~~~~~~~~~-~---~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~-~~~~~~~~spdg~-~  142 (297)
T 2ojh_A           73 PSPEKVDTGFA-T---ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR----LMTKN-LPSYWHGWSPDGK-S  142 (297)
T ss_dssp             CSCEECCCTTC-C---CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE----ECCSS-SSEEEEEECTTSS-E
T ss_pred             CCceEeccccc-c---ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE----EeecC-CCccceEECCCCC-E
Confidence            77665544321 1   1688999999999999775   34666666653233333    22333 3488999999999 6


Q ss_pred             EE-EeecCCeEEEEECCC-CCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceE
Q psy2305         174 CA-LGTYSKIIGLFSDSD-GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRV  251 (334)
Q Consensus       174 l~-~~~~dg~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  251 (334)
                      |+ ++..++.+.+|+++. +.....+..+...+.+++|+|+|++|++++..++.+++|++...+.....+..+  ...+.
T Consensus       143 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~  220 (297)
T 2ojh_A          143 FTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS--AYGDW  220 (297)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC--SEEEE
T ss_pred             EEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC--CcccC
Confidence            65 788899999998642 344566677888999999999999888766248999999997435555555544  45677


Q ss_pred             EEEecCCCceEEeeecC-----------CcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305         252 YFDLTSCSNYLLSGNTN-----------GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV  320 (334)
Q Consensus       252 ~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~  320 (334)
                      .++|+|+|++|++++.+           +.|++||+.+++.          ..+..+.+|...+..++|  +|++    +
T Consensus       221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----------~~~~~~~~~~~~~~~~~~--spdg----~  284 (297)
T 2ojh_A          221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV----------ETLFDLFGGQGTMNSPNW--SPDG----D  284 (297)
T ss_dssp             EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC----------EEEEEEEESTTTSCSCCB--CTTS----S
T ss_pred             CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc----------eeeeccCCCCcccccceE--CCCC----C
Confidence            89999999999888765           5699999988732          234455577888999999  9999    9


Q ss_pred             eEEeeecce
Q psy2305         321 ADATCSGQI  329 (334)
Q Consensus       321 ~l~t~~~d~  329 (334)
                      +|++++.|.
T Consensus       285 ~l~~~~~~~  293 (297)
T 2ojh_A          285 EFAYVRYFP  293 (297)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecc
Confidence            888887764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.97  E-value=5.1e-27  Score=197.50  Aligned_cols=273  Identities=12%  Similarity=0.053  Sum_probs=203.3

Q ss_pred             ceeEEEEcCCCcEEEEeeC-------CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305           3 IEEDVDEAPDGTCLLTNSN-------DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~-------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~   75 (334)
                      .+..++|+|+|+++++++.       ++.|.+||..+++..              ..+..  ...       |..++++|
T Consensus        42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~--------------~~~~~--~~~-------~~~~~~s~   98 (353)
T 3vgz_A           42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT--------------QAIHN--DLK-------PFGATINN   98 (353)
T ss_dssp             SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE--------------EEEEE--SSC-------CCSEEEET
T ss_pred             CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE--------------EEEec--CCC-------cceEEECC
Confidence            4678999999998888773       568999999988765              22222  122       34455688


Q ss_pred             CCcEEE-EeeCCCcEEEEeCCCCeeeEEEcCccccc----cccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCee
Q psy2305          76 FTSYFL-CSSMYAPIHLWDSVGGEIKATYRPYNQVD----EVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGREC  147 (334)
Q Consensus        76 ~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~  147 (334)
                      ++++++ +...++.|.+||..+++.+..+.......    .+..+..++|+|++++++++.   ++.|.+||+.+ ++..
T Consensus        99 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~-~~~~  177 (353)
T 3vgz_A           99 TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN-IKLK  177 (353)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT-TEEE
T ss_pred             CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC-CceE
Confidence            998655 45557899999999999887776533211    011368899999999887553   68899999986 4444


Q ss_pred             eeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc----CCCCeEEEEEccCCcEEEeeecCC
Q psy2305         148 VSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG----HNGGITHLEFSSNGILLFSGARKD  223 (334)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~~d  223 (334)
                      .    .+..+...+.+++|+|+++ .+++++.++.|.+||+.+++....+..    +...+..++|+|+|++|++++..+
T Consensus       178 ~----~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  252 (353)
T 3vgz_A          178 T----AIQNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA  252 (353)
T ss_dssp             E----EECCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS
T ss_pred             E----EecCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC
Confidence            4    2333455578899999999 888888999999999999988777653    455688899999999888777345


Q ss_pred             CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeCCCCCCCCCCCccccccccceeccccc
Q psy2305         224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD  302 (334)
Q Consensus       224 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (334)
                      +.|.+||+.+ ++.+..+....    ...++|+|+|+++++++ .++.|.+||+.++            +.+..+... .
T Consensus       253 ~~v~~~d~~~-~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~------------~~~~~~~~~-~  314 (353)
T 3vgz_A          253 AEVLVVDTRN-GNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY------------KVVKTFDTP-T  314 (353)
T ss_dssp             SEEEEEETTT-CCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT------------EEEEEEECC-S
T ss_pred             CEEEEEECCC-CcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC------------eEEEEEecC-C
Confidence            9999999987 66666555321    24578999999766555 6899999999987            555555543 4


Q ss_pred             ccceeeeccCCCcccceeeEEeeecc
Q psy2305         303 CTNGVRWKHHKFERDLLVADATCSGQ  328 (334)
Q Consensus       303 ~i~~~~~~~s~~~~~~~~~l~t~~~d  328 (334)
                      .+..++|  +|++    ++|+++..+
T Consensus       315 ~~~~~~~--s~dg----~~l~v~~~~  334 (353)
T 3vgz_A          315 HPNSLAL--SADG----KTLYVSVKQ  334 (353)
T ss_dssp             EEEEEEE--CTTS----CEEEEEEEC
T ss_pred             CCCeEEE--cCCC----CEEEEEEcc
Confidence            6789999  9999    877766655

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=9.6e-26  Score=188.13  Aligned_cols=273  Identities=11%  Similarity=0.004  Sum_probs=183.4

Q ss_pred             EEEcCCCcE-EEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC
Q psy2305           7 VDEAPDGTC-LLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM   85 (334)
Q Consensus         7 ~~~sp~~~~-l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~   85 (334)
                      ..|.+++.+ +++++.++.|++||..+++..              ..+..+ .... .++|       +|+++++++++.
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~--------------~~~~~~-~~~~-~~~~-------s~dg~~l~~~~~   59 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL--------------NQITLG-YDFV-DTAI-------TSDCSNVVVTSD   59 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEE--------------EEEECC-CCEE-EEEE-------CSSSCEEEEEES
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCccccee--------------eeEEcc-CCcc-eEEE-------cCCCCEEEEEeC
Confidence            346666554 677778999999999988865              233322 2333 5555       889987666655


Q ss_pred             -CCcEEEEeCCCCee-eEEEcCccccccccceeEEEEcCCCCEEEEee-C-C--cEEEEEcCCCCCeeeeeccccccccc
Q psy2305          86 -YAPIHLWDSVGGEI-KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-S--EVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        86 -d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                       ++.|.+||+.+++. ...+.....     +..+++|+|++++|+++. + +  .|.+||+.+ ++....    +. ...
T Consensus        60 ~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~-~~~~~~----~~-~~~  128 (331)
T 3u4y_A           60 FCQTLVQIETQLEPPKVVAIQEGQS-----SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK-NKFIST----IP-IPY  128 (331)
T ss_dssp             TTCEEEEEECSSSSCEEEEEEECSS-----CCCCEEECTTSSEEEECCCSSSSCEEEEEETTT-TEEEEE----EE-CCT
T ss_pred             CCCeEEEEECCCCceeEEecccCCC-----CccceEECCCCCEEEEecCCCCcccEEEEECCC-CCeEEE----EE-CCC
Confidence             88999999999887 555554332     334499999999999665 3 3  899999986 444432    22 234


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCe-EEEEECCCCCceE----eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC
Q psy2305         160 IVSAIAINPVHPDICALGTYSKI-IGLFSDSDGRPLF----FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP  234 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~  234 (334)
                      ...+++|+|+|+.++++...++. |.+|++.....+.    ...........++|+|+|++|++++..++.|++||+.+ 
T Consensus       129 ~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~-  207 (331)
T 3u4y_A          129 DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN-  207 (331)
T ss_dssp             TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS-
T ss_pred             CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC-
Confidence            56899999999844455555577 9999987644331    11233456889999999997766653689999999987 


Q ss_pred             Ccc---ceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeCCCCCCCCCCCccccccccceeccc----ccc---
Q psy2305         235 GCI---LHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH----QDC---  303 (334)
Q Consensus       235 ~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---  303 (334)
                      ++.   +..+..   ...+..++|+|+|++|++++ .++.|.+||+.+++.          +.+..+..+    ...   
T Consensus       208 ~~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~----------~~~~~~~~~~~~~~~~~~~  274 (331)
T 3u4y_A          208 PENITLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL----------SFVKSFGHGLLIDPRPLFG  274 (331)
T ss_dssp             TTSCEEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE----------EEEEEEECCCCCCCGGGTT
T ss_pred             CcccceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce----------eeecccccccccCCCCccc
Confidence            555   444443   34556788999999776554 578899999998732          112222211    222   


Q ss_pred             cceeeeccCCCcccceeeEEeeec-ceeeee
Q psy2305         304 TNGVRWKHHKFERDLLVADATCSG-QITNVK  333 (334)
Q Consensus       304 i~~~~~~~s~~~~~~~~~l~t~~~-d~~i~~  333 (334)
                      ...++|  +|++    ++|++++. ++.+.+
T Consensus       275 ~~~~~~--spdg----~~l~v~~~~~~~v~v  299 (331)
T 3u4y_A          275 ANQMAL--NKTE----TKLFISANISRELKV  299 (331)
T ss_dssp             CCCEEE--CTTS----SEEEEEETTTTEEEE
T ss_pred             ccceEE--CCCC----CEEEEecCCCCcEEE
Confidence            245899  9999    88766554 556643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=8.7e-26  Score=188.40  Aligned_cols=245  Identities=12%  Similarity=0.124  Sum_probs=173.1

Q ss_pred             ceeEEEEcCCCcEEEEeeC-CCeEEEEECCCCCc-eeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSN-DNHLRTFDLPSELH-CKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~-d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      .+ +++|+|+|++|++++. ++.|++||..+++. .              ..+.. +..+..+       ++++|++++|
T Consensus        42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~--------------~~~~~-~~~~~~~-------~~~s~dg~~l   98 (331)
T 3u4y_A           42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKV--------------VAIQE-GQSSMAD-------VDITPDDQFA   98 (331)
T ss_dssp             EE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEE--------------EEEEE-CSSCCCC-------EEECTTSSEE
T ss_pred             cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeE--------------Eeccc-CCCCccc-------eEECCCCCEE
Confidence            35 8999999997776665 88999999998875 3              22222 2222222       4558899999


Q ss_pred             EEeeCCC---cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCc-EEEEEcCCCCCeeeeecccc
Q psy2305          81 LCSSMYA---PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSE-VKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        81 ~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~-i~i~d~~~~~~~~~~~~~~~  154 (334)
                      +++..++   .|.+||+.+++.+..+....      .+.+++|+|+|++|+++ . ++. +.+|++...+...... ...
T Consensus        99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~  171 (331)
T 3u4y_A           99 VTVTGLNHPFNMQSYSFLKNKFISTIPIPY------DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QEF  171 (331)
T ss_dssp             EECCCSSSSCEEEEEETTTTEEEEEEECCT------TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EEE
T ss_pred             EEecCCCCcccEEEEECCCCCeEEEEECCC------CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Ccc
Confidence            8655553   89999999999887776433      56899999999877655 4 578 9999998644332211 012


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc---eEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP---LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL  231 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~  231 (334)
                      .........++|+|+|+.+++++..++.|.+||+++++.   +..+.. ...+..++|+|+|++|++++..++.|.+||+
T Consensus       172 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          172 ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence            233456789999999983444555689999999999888   777764 3567889999999987766535788999999


Q ss_pred             cCCCcc--ceeeccc--ccCC---ceEEEEecCCCceEEeeec-CCcEEEEeCCCC
Q psy2305         232 RNPGCI--LHTFPRQ--VSTN---QRVYFDLTSCSNYLLSGNT-NGDLSIWNVNTS  279 (334)
Q Consensus       232 ~~~~~~--~~~~~~~--~~~~---~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~  279 (334)
                      .+ ++.  +..+...  ....   ....++|+|+|++|++++. ++.|.+||+...
T Consensus       251 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          251 LS-GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             TT-TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             CC-CceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            86 544  2222211  0011   1234789999998866554 679999999874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.96  E-value=9.1e-28  Score=220.96  Aligned_cols=275  Identities=8%  Similarity=-0.020  Sum_probs=188.3

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeece---eEEEEEEecccceecCCCcEE
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGG---IIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +.+++|+|||+++++ +.||+|++||+.+++..              ..+.. +..   .|.+++|       ||||++|
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~--------------~~~~~-~~~~~~~v~~~~~-------SpDg~~l   75 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTST--------------VLIEG-KKIESLRAIRYEI-------SPDREYA   75 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE--------------EEECT-TTTTTTTCSEEEE-------CTTSSEE
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE--------------EEecc-ccccccccceEEE-------CCCCCEE
Confidence            578899999997776 78999999999988765              22222 221   2555555       8899999


Q ss_pred             EEeeCC---------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeec
Q psy2305          81 LCSSMY---------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        81 ~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~  151 (334)
                      ++++.+         +.+.+||+.+++. ..+.....  ....+..++|||||+.|+.++++.|++||+.+ +.....  
T Consensus        76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~--~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~-g~~~~~--  149 (723)
T 1xfd_A           76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEV--SNAKLQYAGWGPKGQQLIFIFENNIYYCAHVG-KQAIRV--  149 (723)
T ss_dssp             EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTC--CSCCCSBCCBCSSTTCEEEEETTEEEEESSSS-SCCEEE--
T ss_pred             EEEecCccceeecceeeEEEEECCCCce-EeccCCcc--ccccccccEECCCCCEEEEEECCeEEEEECCC-CceEEE--
Confidence            998764         6788999998876 33432211  11147889999999999999889999999986 433321  


Q ss_pred             cccccccc------------------ceEEEEEcCCCCcEEEEeecCC--------------------------------
Q psy2305         152 LKPWFRKN------------------IVSAIAINPVHPDICALGTYSK--------------------------------  181 (334)
Q Consensus       152 ~~~~~~~~------------------~v~~~~~~~~~~~~l~~~~~dg--------------------------------  181 (334)
                        ...+..                  .+.+++|+|||+ .|++++.++                                
T Consensus       150 --~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  226 (723)
T 1xfd_A          150 --VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP  226 (723)
T ss_dssp             --ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred             --ecCCCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence              222222                  237899999999 888876543                                


Q ss_pred             --eEEEEECCCCCceEeeccC------CCCeEEEEEccCCcEEEeeec---CCCeEEEEEccCCCccceeecccccCCce
Q psy2305         182 --IIGLFSDSDGRPLFFLKGH------NGGITHLEFSSNGILLFSGAR---KDCEIICWDLRNPGCILHTFPRQVSTNQR  250 (334)
Q Consensus       182 --~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  250 (334)
                        .|++||+.+++....+..+      ...+..++|+|||++|++...   .+..|++||+.+ ++....+..+ ....+
T Consensus       227 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~-~~~~~  304 (723)
T 1xfd_A          227 SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDE-SEAWL  304 (723)
T ss_dssp             EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEE-CSSCC
T ss_pred             eeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEec-cCCEE
Confidence              7999999988766666554      567899999999998876641   235799999987 5544443322 11222


Q ss_pred             ----EEEEecCCCceEEee--ecCC------cEEEEe-CCCCCCCCCCCccccccccceecccccccce-eeeccCCCcc
Q psy2305         251 ----VYFDLTSCSNYLLSG--NTNG------DLSIWN-VNTSNLPSSPYEESVQEPLYKFSAHQDCTNG-VRWKHHKFER  316 (334)
Q Consensus       251 ----~~~~~s~~~~~l~~~--~~dg------~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~s~~~~  316 (334)
                          ..++|+|||+.|+..  ..++      .|.+|| ...+..          .....+..+...+.. ++|  +||+ 
T Consensus       305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------~~~~~l~~~~~~~~~~~~~--spdg-  371 (723)
T 1xfd_A          305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSN----------DNIQSITSGDWDVTKILAY--DEKG-  371 (723)
T ss_dssp             CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSS----------CCCCBSCCSSSCEEEEEEE--ETTT-
T ss_pred             eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCc----------cceeEeecCCeEEEeeeEE--cCCC-
Confidence                257899999987754  4566      577777 344310          013334333333444 699  9999 


Q ss_pred             cceeeEEeeecc
Q psy2305         317 DLLVADATCSGQ  328 (334)
Q Consensus       317 ~~~~~l~t~~~d  328 (334)
                         +.|+..+.+
T Consensus       372 ---~~l~~~~~~  380 (723)
T 1xfd_A          372 ---NKIYFLSTE  380 (723)
T ss_dssp             ---TEEEEEESS
T ss_pred             ---CEEEEEEcC
Confidence               888766554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=7.4e-26  Score=189.50  Aligned_cols=274  Identities=13%  Similarity=0.126  Sum_probs=180.8

Q ss_pred             cEEEEe-eCCCeEEEEECCC-CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC-CcEE
Q psy2305          14 TCLLTN-SNDNHLRTFDLPS-ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY-APIH   90 (334)
Q Consensus        14 ~~l~~~-~~d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d-~~i~   90 (334)
                      ++++++ +.++.|++|++.. +...              ......+...+.       .++|+|++++|++++.+ +.|.
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~--------------~~~~~~~~~~~~-------~~~~spdg~~l~~~~~~~~~v~   63 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALT--------------LTQVVDVPGQVQ-------PMVVSPDKRYLYVGVRPEFRVL   63 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEE--------------EEEEEECSSCCC-------CEEECTTSSEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEE--------------EeeeEecCCCCc-------eEEECCCCCEEEEeecCCCeEE
Confidence            444444 7899999999964 3221              111122333444       45558899988888876 8999


Q ss_pred             EEeCC--CCee--eEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEE
Q psy2305          91 LWDSV--GGEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAI  164 (334)
Q Consensus        91 iwd~~--~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~  164 (334)
                      +|++.  +++.  +..+....      .+..++|+|++++|+++.  ++.|.+||+.. +......  ........+.++
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~--~~~~~~~~~~~~  134 (343)
T 1ri6_A           64 AYRIAPDDGALTFAAESALPG------SLTHISTDHQGQFVFVGSYNAGNVSVTRLED-GLPVGVV--DVVEGLDGCHSA  134 (343)
T ss_dssp             EEEECTTTCCEEEEEEEECSS------CCSEEEECTTSSEEEEEETTTTEEEEEEEET-TEEEEEE--EEECCCTTBCCC
T ss_pred             EEEecCCCCceeeccccccCC------CCcEEEEcCCCCEEEEEecCCCeEEEEECCC-Ccccccc--ccccCCCCceEE
Confidence            99987  5543  33333211      578999999999887654  78999999952 3222111  112233458899


Q ss_pred             EEcCCCCcEEEEee-cCCeEEEEECCC-CCceE----eecc-CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCC-Cc
Q psy2305         165 AINPVHPDICALGT-YSKIIGLFSDSD-GRPLF----FLKG-HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNP-GC  236 (334)
Q Consensus       165 ~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~-~~  236 (334)
                      +|+|+++ .+++++ .++.|.+||+.+ ++...    .+.. ....+..++|+|++++|++++..++.|.+||+... +.
T Consensus       135 ~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~  213 (343)
T 1ri6_A          135 NISPDNR-TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN  213 (343)
T ss_dssp             EECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred             EECCCCC-EEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence            9999999 777666 899999999987 54432    2222 34578899999999977655436899999999641 22


Q ss_pred             c--ceeecc----cccCCceEEEEecCCCceEEee-ecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeee
Q psy2305         237 I--LHTFPR----QVSTNQRVYFDLTSCSNYLLSG-NTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW  309 (334)
Q Consensus       237 ~--~~~~~~----~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  309 (334)
                      .  ...+..    +.....+..++|+|+|++|+++ ..++.|.+|++.....        ..+.+..+..+.. +..++|
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~--------~~~~~~~~~~~~~-~~~~~~  284 (343)
T 1ri6_A          214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS--------VLSKEGFQPTETQ-PRGFNV  284 (343)
T ss_dssp             CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC--------CEEEEEEEECSSS-CCCEEE
T ss_pred             EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC--------ceEEeeeecCCCc-cceEEE
Confidence            1  112211    1112345678999999888744 4789999999983110        0134444444444 899999


Q ss_pred             ccCCCcccceeeEEeee-cceeeee
Q psy2305         310 KHHKFERDLLVADATCS-GQITNVK  333 (334)
Q Consensus       310 ~~s~~~~~~~~~l~t~~-~d~~i~~  333 (334)
                        +|++    ++|++++ .|+.+.+
T Consensus       285 --s~dg----~~l~~~~~~~~~v~v  303 (343)
T 1ri6_A          285 --DHSG----KYLIAAGQKSHHISV  303 (343)
T ss_dssp             --CTTS----SEEEEECTTTCEEEE
T ss_pred             --CCCC----CEEEEecCCCCeEEE
Confidence              9999    8877777 5777654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=7.3e-26  Score=189.55  Aligned_cols=268  Identities=11%  Similarity=0.147  Sum_probs=176.9

Q ss_pred             ceeEEEEcCCCcEEEEeeCC-CeEEEEECC--CCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           3 IEEDVDEAPDGTCLLTNSND-NHLRTFDLP--SELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d-~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      .+.+++|+|+|++|++++.+ +.|++|++.  +++..              ..........+..       ++|+|++++
T Consensus        39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~-------~~~s~dg~~   97 (343)
T 1ri6_A           39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT--------------FAAESALPGSLTH-------ISTDHQGQF   97 (343)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE--------------EEEEEECSSCCSE-------EEECTTSSE
T ss_pred             CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee--------------eccccccCCCCcE-------EEEcCCCCE
Confidence            57789999999999988876 999999997  44432              1111111123444       455889998


Q ss_pred             EEEeeC-CCcEEEEeCCC---CeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeee--c
Q psy2305          80 FLCSSM-YAPIHLWDSVG---GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSR--N  151 (334)
Q Consensus        80 l~~~~~-d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~--~  151 (334)
                      |++++. ++.|.+||+..   .+....+....      .+.+++|+|++++|+++.  ++.|.+||+...++.....  .
T Consensus        98 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  171 (343)
T 1ri6_A           98 VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD------GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE  171 (343)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEEECCCT------TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEEecCCCeEEEEECCCCccccccccccCCC------CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccc
Confidence            876654 78899999943   33444443322      578999999999888653  8999999998633332110  0


Q ss_pred             ccccccccceEEEEEcCCCCcEEE-EeecCCeEEEEECCC--CCc--eEeec---cC---CCCeEEEEEccCCcEEEeee
Q psy2305         152 LKPWFRKNIVSAIAINPVHPDICA-LGTYSKIIGLFSDSD--GRP--LFFLK---GH---NGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~--~~~--~~~~~---~~---~~~i~~~~~~~~~~~l~~~~  220 (334)
                       ........+.+++|+|+++ +++ ++..++.|.+||+..  ++.  ...+.   ..   ...+..++|+|+|++|+++.
T Consensus       172 -~~~~~~~~~~~~~~~pdg~-~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~  249 (343)
T 1ri6_A          172 -VTTVEGAGPRHMVFHPNEQ-YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD  249 (343)
T ss_dssp             -EECSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred             -cccCCCCCcceEEECCCCC-EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe
Confidence             1122335788999999999 555 445789999999954  432  22222   11   23567899999999887555


Q ss_pred             cCCCeEEEEEccCCC---ccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeCC--CCCCCCCCCcccccccc
Q psy2305         221 RKDCEIICWDLRNPG---CILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVN--TSNLPSSPYEESVQEPL  294 (334)
Q Consensus       221 ~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~~~~~~~~~~~~~~~  294 (334)
                      ..++.|.+||+....   ..+..+..   ...+..++|+|+|++|++++ .++.|.+|++.  +++.          +.+
T Consensus       250 ~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~----------~~~  316 (343)
T 1ri6_A          250 RTASLITVFSVSEDGSVLSKEGFQPT---ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL----------HEK  316 (343)
T ss_dssp             TTTTEEEEEEECTTSCCEEEEEEEEC---SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE----------EEE
T ss_pred             cCCCEEEEEEEcCCCCceEEeeeecC---CCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee----------eEc
Confidence            368999999998311   22222322   22366789999999888877 57999999554  5421          233


Q ss_pred             ceecccccccceeeeccCCCc
Q psy2305         295 YKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       295 ~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      ..+.. ......++|  .|+.
T Consensus       317 ~~~~~-g~~p~~i~~--~~~~  334 (343)
T 1ri6_A          317 GRYAV-GQGPMWVVV--NAHE  334 (343)
T ss_dssp             EEEEC-SSSCCEEEE--EEEC
T ss_pred             ccccc-CCCCeeEEE--Eccc
Confidence            34433 234677888  6654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.95  E-value=1.3e-26  Score=207.98  Aligned_cols=259  Identities=11%  Similarity=0.024  Sum_probs=185.0

Q ss_pred             ceeEEEEcCCCcEEEEeeC-CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSN-DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +|++++|+|||++||+++. ||+++||++.+++..               .+..++...+..+.|       +|| ++++
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~---------------~lt~~~~~~~~~~~~-------spd-~~l~   79 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV---------------KLNREPINSVLDPHY-------GVG-RVIL   79 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE---------------ECCSSCCSEECEECT-------TCS-EEEE
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEcCCCcE---------------eeecccccccccccC-------CCC-eEEE
Confidence            6899999999999999886 999999998666543               333333345666555       778 7777


Q ss_pred             EeeC---CCcEEEEeCCC---CeeeEEEcCccccccccceeEEEEcCCCCEE--EEeeCCcEEEEEcCCCCCeeeeeccc
Q psy2305          82 CSSM---YAPIHLWDSVG---GEIKATYRPYNQVDEVTHAYSLAFSLDGNKI--YAGFLSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        82 ~~~~---d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      +++.   +....+|.+..   +... .+....      .+...+|+|+++.+  +++.++.+.+||+.+ ++...     
T Consensus        80 ~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~------~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~-g~~~~-----  146 (582)
T 3o4h_A           80 VRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK------PMRILSGVDTGEAVVFTGATEDRVALYALDG-GGLRE-----  146 (582)
T ss_dssp             EEECSTTSCCEEEEEEETTSTTCCE-ECTTSC------SBEEEEEEECSSCEEEEEECSSCEEEEEEET-TEEEE-----
T ss_pred             EeccCCCCcceEEEEEeccCCCccc-cccCCC------CceeeeeCCCCCeEEEEecCCCCceEEEccC-CcEEE-----
Confidence            7765   45556654432   3222 333222      34466888888643  344566666999985 43222     


Q ss_pred             ccccccceEEEEEcCCCCcEEEEeecC----CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC--eEE
Q psy2305         154 PWFRKNIVSAIAINPVHPDICALGTYS----KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC--EII  227 (334)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~  227 (334)
                      +..+..  .+++|+|||+ .|++++.+    +.|++||+.+++.. .+..|.+.+..++|+|||+.|+++. .++  .|+
T Consensus       147 l~~~~~--~~~~~spDG~-~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~  221 (582)
T 3o4h_A          147 LARLPG--FGFVSDIRGD-LIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLE-TAREARLV  221 (582)
T ss_dssp             EEEESS--CEEEEEEETT-EEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEE-CSSCEEEE
T ss_pred             eecCCC--ceEEECCCCC-EEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEcc-CCCeeEEE
Confidence            222323  7899999999 88877776    78999999887754 6777888899999999999999777 788  899


Q ss_pred             EEEccCCCccceeecccccCCceEEEE--------ecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc
Q psy2305         228 CWDLRNPGCILHTFPRQVSTNQRVYFD--------LTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA  299 (334)
Q Consensus       228 iwd~~~~~~~~~~~~~~~~~~~~~~~~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  299 (334)
                      +||+.+ ++.. .+..+  ...+..+.        |+|||.++++++.++.+++|++  +            +...   .
T Consensus       222 ~~d~~~-~~~~-~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g------------~~~~---~  280 (582)
T 3o4h_A          222 TVDPRD-GSVE-DLELP--SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G------------ERVE---A  280 (582)
T ss_dssp             EECTTT-CCEE-ECCCS--CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T------------EEEC---C
T ss_pred             EEcCCC-CcEE-EccCC--CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C------------Ceec---c
Confidence            999987 5444 44433  22333344        9999988899999999999999  5            3333   2


Q ss_pred             cccccceeeeccCCCcccceeeEEeeeccee
Q psy2305         300 HQDCTNGVRWKHHKFERDLLVADATCSGQIT  330 (334)
Q Consensus       300 ~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~  330 (334)
                      ..+.+.+++|  + ++    +++++++.+.+
T Consensus       281 ~~~~v~~~~~--s-dg----~~l~~~s~~~~  304 (582)
T 3o4h_A          281 PQGNHGRVVL--W-RG----KLVTSHTSLST  304 (582)
T ss_dssp             CSSEEEEEEE--E-TT----EEEEEEEETTE
T ss_pred             CCCceEEEEe--c-CC----EEEEEEcCCCC
Confidence            2356889999  9 99    89988887744

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=3.6e-26  Score=187.21  Aligned_cols=232  Identities=14%  Similarity=0.054  Sum_probs=168.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCC-CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPS-ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +.|.+++|+|+|++|++++ ++.|++||+.+ ++..              .....++...+.+++|       +|++++|
T Consensus        42 ~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~--------------~~~~~~~~~~~~~~~~-------spdg~~l   99 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE--------------KVDTGFATICNNDHGI-------SPDGALY   99 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE--------------ECCCTTCCCBCSCCEE-------CTTSSEE
T ss_pred             cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce--------------EeccccccccccceEE-------CCCCCEE
Confidence            4689999999999999986 78999999998 7654              2222222344555454       8899999


Q ss_pred             EEee--CCCcEEEE--eCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          81 LCSS--MYAPIHLW--DSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        81 ~~~~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      ++++  .++...||  +..+++ ...+....      .+..++|+|+++.|+ ++. ++.+++|+++..+....    .+
T Consensus       100 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~------~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~----~~  168 (297)
T 2ojh_A          100 AISDKVEFGKSAIYLLPSTGGT-PRLMTKNL------PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET----RL  168 (297)
T ss_dssp             EEEECTTTSSCEEEEEETTCCC-CEECCSSS------SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE----EC
T ss_pred             EEEEeCCCCcceEEEEECCCCc-eEEeecCC------CccceEECCCCCEEEEEECCCCceEEEEEECCCCcce----Ec
Confidence            9988  33445555  555544 33343322      578899999999887 555 89999999765344443    45


Q ss_pred             cccccceEEEEEcCCCCcEEEEee-cCCeEEEEECC-CCCceEeeccCCCCeEEEEEccCCcEEEeeecCC---------
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGT-YSKIIGLFSDS-DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD---------  223 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d---------  223 (334)
                      ..+...+.+++|+|+++ .++.++ .++.+.+|++. .+.....+..|...+..++|+|+|++|++++ .+         
T Consensus       169 ~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~~~~~~  246 (297)
T 2ojh_A          169 THGEGRNDGPDYSPDGR-WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVS-YDADVFDHPRD  246 (297)
T ss_dssp             CCSSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEE-EETTCCSCCSS
T ss_pred             ccCCCccccceECCCCC-EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEE-cCCCCCccccc
Confidence            66778899999999999 666555 58899999986 5667777887888899999999999998887 45         


Q ss_pred             --CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC
Q psy2305         224 --CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG  269 (334)
Q Consensus       224 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg  269 (334)
                        +.|++||+.. ++.........+...+..++|+|++++|++++.+.
T Consensus       247 ~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          247 LDVRVQLMDMDG-GNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEEEEETTS-CSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CceEEEEEecCC-CCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence              5699999986 44322222112245566788999999998887653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=8.1e-26  Score=208.53  Aligned_cols=274  Identities=10%  Similarity=0.016  Sum_probs=193.6

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCC---CceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSE---LHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      .|.+++|||||++|++++. +.|++||+.++   ...               .+. .+...+..++|       ||||++
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---------------~l~-~~~~~~~~~~~-------SPDG~~  165 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---------------QLT-HGEGFATDAKL-------SPKGGF  165 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---------------BCC-CSSSCEEEEEE-------CTTSSE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---------------Ecc-cCCcccccccC-------CCCCCE
Confidence            3789999999999999886 89999999987   432               222 23456777777       779999


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCccccc-----------cccceeEEEEcCCCCEEEEee-CC--------------
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVD-----------EVTHAYSLAFSLDGNKIYAGF-LS--------------  133 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~-d~--------------  133 (334)
                      |++++ ++.|++||+.+++...........-           +...+..++|+|||++|++++ |+              
T Consensus       166 la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~  244 (741)
T 2ecf_A          166 VSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYAD  244 (741)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSS
T ss_pred             EEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCC
Confidence            99887 4689999999887655433221100           000147899999999998775 54              


Q ss_pred             -------------------cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeec-----CCeEEEEECC
Q psy2305         134 -------------------EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY-----SKIIGLFSDS  189 (334)
Q Consensus       134 -------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~  189 (334)
                                         .|.+||+.+. ....... ....|...+..++| |||+ .|++++.     +..|++||+.
T Consensus       245 ~~~~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~~-pDg~-~l~~~~~~~~~~~~~i~~~d~~  320 (741)
T 2ecf_A          245 RTDVIEQRYPAAGDANVQVKLGVISPAEQ-AQTQWID-LGKEQDIYLARVNW-RDPQ-HLSFQRQSRDQKKLDLVEVTLA  320 (741)
T ss_dssp             CEEEEEEECCBTTSCCCEEEEEEECSSTT-CCCEEEC-CCSCSSEEEEEEEE-EETT-EEEEEEEETTSSEEEEEEEETT
T ss_pred             cccceEeecCCCCCCCCeeEEEEEECCCC-CceEEec-CCCCcceEEEEEEe-CCCC-EEEEEEecccCCeEEEEEEECC
Confidence                               7888888741 2222210 11257788999999 9999 7776653     5689999999


Q ss_pred             CCCceEeeccCCC----CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEE-EecCCCceEEe
Q psy2305         190 DGRPLFFLKGHNG----GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYF-DLTSCSNYLLS  264 (334)
Q Consensus       190 ~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~  264 (334)
                      +++....+..+..    .+..++|+|||+++++++ .++.++||.+...+. ...+..+  ...+..+ .|+|+|+.|+.
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~-~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~  396 (741)
T 2ecf_A          321 SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSE-RTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYF  396 (741)
T ss_dssp             TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEEC-TTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEE
T ss_pred             CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEec-CCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEE
Confidence            9987777665543    346899999999888888 799888888764344 5555544  4445565 59999987754


Q ss_pred             -eecCC--cEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeec
Q psy2305         265 -GNTNG--DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       265 -~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                       ++.++  .++||++....           .....+.. ...+..++|  +||+    ++|+....
T Consensus       397 ~~~~~~~~~~~l~~~~~~g-----------~~~~~l~~-~~~~~~~~~--spdg----~~l~~~~~  444 (741)
T 2ecf_A          397 RAGIESARESQIYAVPLQG-----------GQPQRLSK-APGMHSASF--ARNA----SVYVDSWS  444 (741)
T ss_dssp             EECSSCTTCBEEEEEETTC-----------CCCEECCC-SCSEEEEEE--CTTS----SEEEEEEE
T ss_pred             EEeCCCCceEEEEEEEcCC-----------CCeeeccc-CCCceEEEE--CCCC----CEEEEEec
Confidence             44455  89999986521           23344444 456789999  9999    87776544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=5.1e-25  Score=183.96  Aligned_cols=266  Identities=8%  Similarity=-0.010  Sum_probs=188.5

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeece-eEEEEEEecccceecCCCcEE-EEeeCCCcEEE
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGG-IIYDYVWYPKTSSIDGFTSYF-LCSSMYAPIHL   91 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~s~~~~~l-~~~~~d~~i~i   91 (334)
                      ++|++++.++.|++||..+++..              ..+...+.. .+       ..++++|+++.+ +++..++.|.+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~--------------~~~~~~~~~~~~-------~~~~~s~dg~~l~v~~~~~~~v~~   60 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVD--------------KVITIADAGPTP-------MVPMVAPGGRIAYATVNKSESLVK   60 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE--------------EEEECTTCTTCC-------CCEEECTTSSEEEEEETTTTEEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEE--------------EEEEcCCCCCCc-------cceEEcCCCCEEEEEeCCCCeEEE
Confidence            57899999999999999988765              222211110 23       345558899765 45566789999


Q ss_pred             EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-------------eCCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-------------FLSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      ||+.+++.+..+...........+..++|+|+|++|+++             .++.|.+||+.+ ++....    +. ..
T Consensus        61 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~----~~-~~  134 (337)
T 1pby_B           61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRKA----FE-AP  134 (337)
T ss_dssp             EETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEEE----EE-CC
T ss_pred             EECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC-CcEEEE----Ee-CC
Confidence            999999887766542210001146789999999988876             368999999985 444332    22 23


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC--------------
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC--------------  224 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~--------------  224 (334)
                      ..+.+++|+|+++ +++++  ++.|.+||+.+++....+..+.. ...+.|+|+++.|+..+..++              
T Consensus       135 ~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~  210 (337)
T 1pby_B          135 RQITMLAWARDGS-KLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDID  210 (337)
T ss_dssp             SSCCCEEECTTSS-CEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred             CCcceeEECCCCC-EEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccc
Confidence            4577899999999 77766  68999999999988777754431 112378999987766552233              


Q ss_pred             ---------eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccc
Q psy2305         225 ---------EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLY  295 (334)
Q Consensus       225 ---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  295 (334)
                               .|.+||+.+ ++.. .+........+..++|+|+|++++++  ++.|.+||+.++            +.+.
T Consensus       211 ~~~~~~~~~~v~~~d~~~-~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~------------~~~~  274 (337)
T 1pby_B          211 PADPTAYRTGLLTMDLET-GEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN------------ASIK  274 (337)
T ss_dssp             TTSGGGEEEEEEEEETTT-CCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT------------EEEE
T ss_pred             cccccccccceEEEeCCC-CCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC------------cCcc
Confidence                     468999987 4433 33323334567789999999999888  689999999987            4555


Q ss_pred             eecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         296 KFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       296 ~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+.. ...+.+++|  +|++    ++|++++.++.+.+
T Consensus       275 ~~~~-~~~~~~~~~--s~dg----~~l~~~~~~~~i~v  305 (337)
T 1pby_B          275 RVPL-PHSYYSVNV--STDG----STVWLGGALGDLAA  305 (337)
T ss_dssp             EEEC-SSCCCEEEE--CTTS----CEEEEESBSSEEEE
T ss_pred             eecC-CCceeeEEE--CCCC----CEEEEEcCCCcEEE
Confidence            5543 346789999  9999    98888888888764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=4.4e-25  Score=202.54  Aligned_cols=273  Identities=9%  Similarity=0.011  Sum_probs=188.8

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|.+++|||| ++++.+ .++.|++||+.+++..               .+.. +...+.+       ++|||||+.|++
T Consensus        83 ~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~---------------~l~~-~~~~~~~-------~~~SpdG~~la~  137 (706)
T 2z3z_A           83 PSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT---------------YLFD-TNEETAS-------LDFSPVGDRVAY  137 (706)
T ss_dssp             CCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE---------------EEEC-CTTCCTT-------CEECTTSSEEEE
T ss_pred             CceeEEECCC-CeEEEE-ECCEEEEEECCCCceE---------------EccC-CcccccC-------CcCCCCCCEEEE
Confidence            5899999999 555555 3599999999887653               1221 2233433       455889999998


Q ss_pred             eeCCCcEEEEeCCC-----CeeeEEEcCcccc---------ccccceeEEEEcCCCCEEEEee-----------------
Q psy2305          83 SSMYAPIHLWDSVG-----GEIKATYRPYNQV---------DEVTHAYSLAFSLDGNKIYAGF-----------------  131 (334)
Q Consensus        83 ~~~d~~i~iwd~~~-----~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~-----------------  131 (334)
                      + .++.|++||+.+     ++...........         .+...+.+++|+|||++|++++                 
T Consensus       138 ~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~  216 (706)
T 2z3z_A          138 V-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPL  216 (706)
T ss_dssp             E-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSS
T ss_pred             E-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCC
Confidence            5 689999999988     7665433322110         0011258999999999999764                 


Q ss_pred             -----------------CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCC-----eEEEEECC
Q psy2305         132 -----------------LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK-----IIGLFSDS  189 (334)
Q Consensus       132 -----------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~  189 (334)
                                       +..|.+||+.+ +..... . ....|...+.+++|+|+|+ .|++++.++     .|++||+.
T Consensus       217 ~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~~-~-~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~  292 (706)
T 2z3z_A          217 EAESKPLYYPMAGTPSHHVTVGIYHLAT-GKTVYL-Q-TGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAE  292 (706)
T ss_dssp             SCEEEEECCCBTTSCCCEEEEEEEETTT-TEEEEC-C-CCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETT
T ss_pred             CCceEEeeCCCCCCCCCeeEEEEEECCC-CceEee-c-cCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECC
Confidence                             25799999985 333221 0 1225667899999999999 888877765     89999999


Q ss_pred             CCCceEeec--cCCC---CeEEEEEcc--CCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEE-EEecCCCce
Q psy2305         190 DGRPLFFLK--GHNG---GITHLEFSS--NGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY-FDLTSCSNY  261 (334)
Q Consensus       190 ~~~~~~~~~--~~~~---~i~~~~~~~--~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~  261 (334)
                      +++....+.  .+..   .+..++|+|  +|++|+++. .++.+++|++...+..+..+..+  ...+.. ++|+|+|+.
T Consensus       293 ~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~-~~g~~~l~~~~~~~~~~~~l~~~--~~~v~~~~~~spdg~~  369 (706)
T 2z3z_A          293 TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR-RDGWNHLYLYDTTGRLIRQVTKG--EWEVTNFAGFDPKGTR  369 (706)
T ss_dssp             TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC-TTSSCEEEEEETTSCEEEECCCS--SSCEEEEEEECTTSSE
T ss_pred             CCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc-cCCccEEEEEECCCCEEEecCCC--CeEEEeeeEEcCCCCE
Confidence            884444332  1222   246789999  999999888 79999999987435556666543  334554 789999988


Q ss_pred             EEeeec-CC----cEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecc
Q psy2305         262 LLSGNT-NG----DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQ  328 (334)
Q Consensus       262 l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d  328 (334)
                      |+.++. ++    .|..||+.++.             ...+. +...+..++|  +|++    ++|+..+.+
T Consensus       370 l~~~~~~~~~~~~~l~~~d~~~~~-------------~~~l~-~~~~~~~~~~--spdg----~~l~~~~~~  421 (706)
T 2z3z_A          370 LYFESTEASPLERHFYCIDIKGGK-------------TKDLT-PESGMHRTQL--SPDG----SAIIDIFQS  421 (706)
T ss_dssp             EEEEESSSCTTCBEEEEEETTCCC-------------CEESC-CSSSEEEEEE--CTTS----SEEEEEEEC
T ss_pred             EEEEecCCCCceEEEEEEEcCCCC-------------ceecc-CCCceEEEEE--CCCC----CEEEEEecC
Confidence            766544 44    67777777652             22232 5566889999  9999    887776443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=7.4e-25  Score=201.57  Aligned_cols=280  Identities=10%  Similarity=-0.013  Sum_probs=184.4

Q ss_pred             ceeEEEEcCCCcEEEEeeCC---------CeEEEEECCCCCceeeeeCCCCCCCCcceeeee--eeceeEEEEEEecccc
Q psy2305           3 IEEDVDEAPDGTCLLTNSND---------NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKI--KEGGIIYDYVWYPKTS   71 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d---------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~   71 (334)
                      .|.+++|||||++||+++.+         +.+++||+.+++..               .+..  .+...+.       .+
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---------------~l~~~~~~~~~~~-------~~  119 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ---------------SLDPPEVSNAKLQ-------YA  119 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE---------------ECCCTTCCSCCCS-------BC
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE---------------eccCCcccccccc-------cc
Confidence            38899999999999998764         78899999988753               1111  1122233       35


Q ss_pred             eecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccc-------------cccceeEEEEcCCCCEEEEee-CC----
Q psy2305          72 SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVD-------------EVTHAYSLAFSLDGNKIYAGF-LS----  133 (334)
Q Consensus        72 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~-d~----  133 (334)
                      +|||||+.|++++. +.|++||+.+++............             ....+.+++|+|||+.|++++ ++    
T Consensus       120 ~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~  198 (723)
T 1xfd_A          120 GWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVP  198 (723)
T ss_dssp             CBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred             EECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccc
Confidence            56899999999885 789999999887766554322100             001237899999999999765 32    


Q ss_pred             ------------------------------cEEEEEcCCCCCeeeeecc--cccccccceEEEEEcCCCCcEEEEeec--
Q psy2305         134 ------------------------------EVKIFSTDRPGRECVSRNL--KPWFRKNIVSAIAINPVHPDICALGTY--  179 (334)
Q Consensus       134 ------------------------------~i~i~d~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~--  179 (334)
                                                    .|++||+.+ +........  ....+...+..++|+|||+ ++++...  
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~  276 (723)
T 1xfd_A          199 IMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRA  276 (723)
T ss_dssp             EEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETT
T ss_pred             eEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCC
Confidence                                          788999886 332221100  1112366789999999998 7766543  


Q ss_pred             --CCeEEEEECCCCCceEeecc-CCCCe----EEEEEccCCcEEEee-ecCCC------eEEEEEccCCCcc--ceeecc
Q psy2305         180 --SKIIGLFSDSDGRPLFFLKG-HNGGI----THLEFSSNGILLFSG-ARKDC------EIICWDLRNPGCI--LHTFPR  243 (334)
Q Consensus       180 --dg~i~i~d~~~~~~~~~~~~-~~~~i----~~~~~~~~~~~l~~~-~~~d~------~i~iwd~~~~~~~--~~~~~~  243 (334)
                        +..|++||+.+++....+.. +...+    ..++|+|||+.|+.. +..++      .|++||+...+..  ...+..
T Consensus       277 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~  356 (723)
T 1xfd_A          277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS  356 (723)
T ss_dssp             SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred             CCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence              35799999999887666543 33333    378999999977754 32566      4666663221331  344432


Q ss_pred             cccCCceEE-EEecCCCceEEeeecC---CcEEEEeCCCCCCCCCCCccccccccceecc---cccccceeeeccCCCcc
Q psy2305         244 QVSTNQRVY-FDLTSCSNYLLSGNTN---GDLSIWNVNTSNLPSSPYEESVQEPLYKFSA---HQDCTNGVRWKHHKFER  316 (334)
Q Consensus       244 ~~~~~~~~~-~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~s~~~~  316 (334)
                      .  ...+.. ++|+|+|+.|+..+.+   +.+++|++.....          .....+..   |...+..++|  +|++ 
T Consensus       357 ~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~----------~~~~~l~~~~~~~~~~~~~~~--spdg-  421 (723)
T 1xfd_A          357 G--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN----------FNRQCLSCDLVENCTYFSASF--SHSM-  421 (723)
T ss_dssp             S--SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT----------CCCBCSSTTSSSSCCCCEEEE--CTTS-
T ss_pred             C--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC----------CCcceecccccCCCCeEEEEE--CCCC-
Confidence            2  222333 6899999999766554   7899999875421          12223332   5667889999  9999 


Q ss_pred             cceeeEEee
Q psy2305         317 DLLVADATC  325 (334)
Q Consensus       317 ~~~~~l~t~  325 (334)
                         ++|+..
T Consensus       422 ---~~l~~~  427 (723)
T 1xfd_A          422 ---DFFLLK  427 (723)
T ss_dssp             ---SEEEEE
T ss_pred             ---CEEEEE
Confidence               776654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=1e-23  Score=177.13  Aligned_cols=243  Identities=13%  Similarity=0.140  Sum_probs=164.4

Q ss_pred             cccceecCCCcEEEEeeC---CCcEEEEeCCCCeee--EEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEc
Q psy2305          68 PKTSSIDGFTSYFLCSSM---YAPIHLWDSVGGEIK--ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFST  140 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~~---d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~  140 (334)
                      |..++|+|+|+ |++++.   ++.|.+|++.+++..  ..+..+..     .+..++|+|+|++|++++  ++.+.+|++
T Consensus        42 p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~-----~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           42 PTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGT-----PPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             CCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESC-----CCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCC-----CCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            45567799999 555543   689999999777632  22222222     678999999999888765  789999999


Q ss_pred             CCCCCeeeeecccccc-------cccceEEEEEcCCCCcEEEEeecCCeEEEEECC-CCCceE--eecc-CCCCeEEEEE
Q psy2305         141 DRPGRECVSRNLKPWF-------RKNIVSAIAINPVHPDICALGTYSKIIGLFSDS-DGRPLF--FLKG-HNGGITHLEF  209 (334)
Q Consensus       141 ~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~-~~~~i~~~~~  209 (334)
                      ...+...........+       ....+.+++|+|+|+ ++++...++.|.+|++. +++...  .+.. ....+..++|
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            7533322211001111       123488999999999 88888889999999998 444322  2222 2336788999


Q ss_pred             ccCCcEEEeeecCCCeEEEEEccCC-Ccc--ceeeccccc----CCceEEEEecCCCceEE-eeecCCcEEEEeCCCCCC
Q psy2305         210 SSNGILLFSGARKDCEIICWDLRNP-GCI--LHTFPRQVS----TNQRVYFDLTSCSNYLL-SGNTNGDLSIWNVNTSNL  281 (334)
Q Consensus       210 ~~~~~~l~~~~~~d~~i~iwd~~~~-~~~--~~~~~~~~~----~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~  281 (334)
                      +|+|++|++++..++.+.+|++... +..  ...+.....    ...+..++|+|+|++|+ +...++.|.+|++.....
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH  274 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence            9999977775536899999999842 221  112221111    13477899999999875 455689999999974211


Q ss_pred             CCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecc-eeee
Q psy2305         282 PSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQ-ITNV  332 (334)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d-~~i~  332 (334)
                      .         +.+..+..+...+..++|  +|++    ++|++++.+ +.+.
T Consensus       275 ~---------~~~~~~~~~~~~~~~~~~--spdg----~~l~v~~~~~~~v~  311 (347)
T 3hfq_A          275 L---------TLIQQISTEGDFPRDFDL--DPTE----AFVVVVNQNTDNAT  311 (347)
T ss_dssp             E---------EEEEEEECSSSCCCEEEE--CTTS----SEEEEEETTTTEEE
T ss_pred             E---------EEeEEEecCCCCcCeEEE--CCCC----CEEEEEEcCCCcEE
Confidence            1         455556666667899999  9999    988887754 6554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=3.6e-25  Score=203.17  Aligned_cols=280  Identities=11%  Similarity=0.101  Sum_probs=182.5

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCc--eeeeeCCC--CCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELH--CKSVWRPS--NQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      +..+.|.  |..+++++.++ | +||+.+++.  ...+....  ..+...... .......|.+++|       ||| +.
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~v~~~~~-------spd-~~   94 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKF-QTTDAFPSFRTLD-------AGR-GL   94 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC------------CCCEEEEE-------TTT-TE
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhcc-ccccccCceeEEE-------CCC-Ce
Confidence            4557788  55667777777 8 999998876  31000000  000000000 0001134666665       778 55


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCC----CCeeeeeccccc
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRP----GRECVSRNLKPW  155 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~----~~~~~~~~~~~~  155 (334)
                      ++.+. ++.|++||+.+++....... ..     .+.+++|+|||+.|+++.++.|++||+.+.    ++...    ...
T Consensus        95 ~~~~~-~~~i~~~d~~~~~~~~l~~~-~~-----~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~----~~~  163 (706)
T 2z3z_A           95 VVLFT-QGGLVGFDMLARKVTYLFDT-NE-----ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIA----VTI  163 (706)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEECC-TT-----CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEE----SCS
T ss_pred             EEEEE-CCEEEEEECCCCceEEccCC-cc-----cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEE----ecc
Confidence            55553 59999999998876554432 22     678899999999999878999999999851    22222    122


Q ss_pred             cccc--------------ceEEEEEcCCCCcEEEEee---------------------------------cCCeEEEEEC
Q psy2305         156 FRKN--------------IVSAIAINPVHPDICALGT---------------------------------YSKIIGLFSD  188 (334)
Q Consensus       156 ~~~~--------------~v~~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~  188 (334)
                      .+..              .+.++.|+|||+ .|++++                                 .+..|++||+
T Consensus       164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~  242 (706)
T 2z3z_A          164 DGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL  242 (706)
T ss_dssp             CCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred             CCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence            2222              258899999999 888876                                 4468999999


Q ss_pred             CCCCceEeec--cCCCCeEEEEEccCCcEEEeeecCCC-----eEEEEEccCCCccceeecccccCC---ceEEEEecC-
Q psy2305         189 SDGRPLFFLK--GHNGGITHLEFSSNGILLFSGARKDC-----EIICWDLRNPGCILHTFPRQVSTN---QRVYFDLTS-  257 (334)
Q Consensus       189 ~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~s~-  257 (334)
                      .+++......  .|...+.+++|+|||++|++++ .++     .|++||+.+ +.....+.......   .+..+.|+| 
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~~sp~  320 (706)
T 2z3z_A          243 ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAET-GRFVRTLFVETDKHYVEPLHPLTFLPG  320 (706)
T ss_dssp             TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTT-CCEEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             CCCceEeeccCCCCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCC-CceeeEEEEccCCCeECccCCceeecC
Confidence            8887554432  4667899999999999999877 565     899999987 52233332211121   124578999 


Q ss_pred             -CCceEEeeecCCcEEEEeCC-CCCCCCCCCccccccccceecccccccce-eeeccCCCcccceeeEEeeecc
Q psy2305         258 -CSNYLLSGNTNGDLSIWNVN-TSNLPSSPYEESVQEPLYKFSAHQDCTNG-VRWKHHKFERDLLVADATCSGQ  328 (334)
Q Consensus       258 -~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~s~~~~~~~~~l~t~~~d  328 (334)
                       +|+++++++.|+.++||.+. .+            ..+..+..+...+.. ++|  +|++    +.|+.++.+
T Consensus       321 ~dg~~l~~~~~~g~~~l~~~~~~~------------~~~~~l~~~~~~v~~~~~~--spdg----~~l~~~~~~  376 (706)
T 2z3z_A          321 SNNQFIWQSRRDGWNHLYLYDTTG------------RLIRQVTKGEWEVTNFAGF--DPKG----TRLYFESTE  376 (706)
T ss_dssp             CSSEEEEEECTTSSCEEEEEETTS------------CEEEECCCSSSCEEEEEEE--CTTS----SEEEEEESS
T ss_pred             CCCEEEEEEccCCccEEEEEECCC------------CEEEecCCCCeEEEeeeEE--cCCC----CEEEEEecC
Confidence             99999999999999999876 33            455666667667776 799  9999    777655443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.94  E-value=4.9e-25  Score=210.12  Aligned_cols=269  Identities=10%  Similarity=0.014  Sum_probs=201.9

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCC--CCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPS--ELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      .+.++.|+++ .++++++.++.++||.+..  +...               .+..+.  .+...+|       +|+|+.|
T Consensus       205 ~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~---------------~l~~~~--~~~~~~~-------SpDG~~l  259 (1045)
T 1k32_A          205 HVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLR---------------KHTSFT--DYYPRHL-------NTDGRRI  259 (1045)
T ss_dssp             CCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCE---------------ECCCCC--SSCEEEE-------EESSSCE
T ss_pred             cccceEEeCC-EEEEEEeccCceEEEEEeCCCCcce---------------EecCCC--CcceeeE-------cCCCCEE
Confidence            5778899988 6777788889999997653  2221               222222  2333344       7799988


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCcccc------ccccceeEEEEc-CCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQV------DEVTHAYSLAFS-LDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      +++. ++.|.+|++...+ +..+......      .+...+..++|+ |||+.|+++.++.+.+|++.. +. ..    .
T Consensus       260 a~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~-~~-~~----~  331 (1045)
T 1k32_A          260 LFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSG-TY-VL----K  331 (1045)
T ss_dssp             EEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTS-SB-EE----E
T ss_pred             EEEe-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCC-Cc-eE----E
Confidence            8874 8899999985443 3344432100      011158899999 999999988899999999885 33 33    2


Q ss_pred             cccccc-ceEEEEEcCCCCcEEEEeecCCeEE-EEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305         154 PWFRKN-IVSAIAINPVHPDICALGTYSKIIG-LFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL  231 (334)
Q Consensus       154 ~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~  231 (334)
                      +..|.. .+..++|+ +|+ .|++++.++.+. +||+.+++.. .+.+|...+..++|+|+|++|++++ .++.|++||+
T Consensus       332 ~~~~~~~~~~~~~~s-dg~-~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~-~~~~v~~~d~  407 (1045)
T 1k32_A          332 VPEPLRIRYVRRGGD-TKV-AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDL  407 (1045)
T ss_dssp             CSCCSCEEEEEECSS-SEE-EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEET
T ss_pred             ccCCCcceEEeeeEc-CCC-eEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEEC-CCCeEEEEEC
Confidence            455666 89999999 998 888888888899 9998876654 4447888999999999999999999 8999999999


Q ss_pred             cCCCccceeecccccCCceEEEEecCCCceEEeeecCC----------cEEEEeCCCCCCCCCCCccccccccceecccc
Q psy2305         232 RNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG----------DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ  301 (334)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (334)
                      .+ ++....+..+  ...+..++|+|||++|++++.++          .|++||+.++            + ...+..|.
T Consensus       408 ~t-g~~~~~~~~~--~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g------------~-~~~l~~~~  471 (1045)
T 1k32_A          408 ET-GKPTVIERSR--EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR------------K-IFAATTEN  471 (1045)
T ss_dssp             TT-CCEEEEEECS--SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT------------E-EEECSCSS
T ss_pred             CC-CceEEeccCC--CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC------------c-EEEeeCCC
Confidence            87 6555544443  45566789999999999887654          8999999986            4 55677777


Q ss_pred             cccceeeeccCCCcccceeeEEeeeccee
Q psy2305         302 DCTNGVRWKHHKFERDLLVADATCSGQIT  330 (334)
Q Consensus       302 ~~i~~~~~~~s~~~~~~~~~l~t~~~d~~  330 (334)
                      ..+..++|  +|||    ++|++++.++.
T Consensus       472 ~~~~~~~~--spdG----~~l~~~s~~~~  494 (1045)
T 1k32_A          472 SHDYAPAF--DADS----KNLYYLSYRSL  494 (1045)
T ss_dssp             SBEEEEEE--CTTS----CEEEEEESCCC
T ss_pred             cccCCceE--cCCC----CEEEEEecccC
Confidence            78889999  9999    99998887654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=1.3e-23  Score=176.41  Aligned_cols=252  Identities=12%  Similarity=0.179  Sum_probs=162.7

Q ss_pred             ceeEEEEcCCCcEEEEeeC---CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           3 IEEDVDEAPDGTCLLTNSN---DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      .+..++|+|||+ |++++.   ++.|++|++.++....            ...+. .+...       |..++|+|++++
T Consensus        41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~------------~~~~~-~~~~~-------p~~~a~spdg~~   99 (347)
T 3hfq_A           41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK------------LNTVV-APGTP-------PAYVAVDEARQL   99 (347)
T ss_dssp             CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEE------------EEEEE-EESCC-------CSEEEEETTTTE
T ss_pred             CcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEE------------eeeee-cCCCC-------CEEEEECCCCCE
Confidence            356799999999 655544   6899999997665420            01111 12233       344556889998


Q ss_pred             EEEee-CCCcEEEEeCCC-Ce--eeEEEcCcccc----ccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeee
Q psy2305          80 FLCSS-MYAPIHLWDSVG-GE--IKATYRPYNQV----DEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        80 l~~~~-~d~~i~iwd~~~-~~--~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~  150 (334)
                      |++++ .++.|.+|++.. +.  .+..+......    .....+.+++|+|+|+++++.. ++.|.+|++...+......
T Consensus       100 l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~  179 (347)
T 3hfq_A          100 VYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQS  179 (347)
T ss_dssp             EEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred             EEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEee
Confidence            88887 678999999853 33  22333211110    0111478999999999544555 7899999998434332211


Q ss_pred             cccccccccceEEEEEcCCCCcEEEE-eecCCeEEEEECCC--CCc--eEeeccCC------CCeEEEEEccCCcEEEee
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICAL-GTYSKIIGLFSDSD--GRP--LFFLKGHN------GGITHLEFSSNGILLFSG  219 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~------~~i~~~~~~~~~~~l~~~  219 (334)
                      . ........+..++|+|+|+ ++++ ...++.|.+|++..  ++.  +..+....      ..+..++|+|+|++|+++
T Consensus       180 ~-~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~  257 (347)
T 3hfq_A          180 V-LTMEAGFGPRHLVFSPDGQ-YAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVS  257 (347)
T ss_dssp             E-EECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEE
T ss_pred             e-EEcCCCCCCceEEECCCCC-EEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEE
Confidence            0 0111233577899999999 5554 56788999999874  432  22232222      348899999999988655


Q ss_pred             ecCCCeEEEEEccCCCc--cceeecccccCCceEEEEecCCCceEEeeecC-CcEEEE--eCCCC
Q psy2305         220 ARKDCEIICWDLRNPGC--ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-GDLSIW--NVNTS  279 (334)
Q Consensus       220 ~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-g~i~iw--d~~~~  279 (334)
                      ...++.|.+|++...+.  .+..+..+  ...+..++|+|+|++|++++.+ +.|.+|  |..++
T Consensus       258 ~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg  320 (347)
T 3hfq_A          258 NRGYNTLAVFAVTADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSG  320 (347)
T ss_dssp             EETTTEEEEEEECGGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             eCCCCEEEEEEECCCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence            43689999999974232  22223222  3456789999999998887764 899999  44555

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.94  E-value=1.9e-25  Score=205.41  Aligned_cols=266  Identities=10%  Similarity=0.005  Sum_probs=180.1

Q ss_pred             EEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeece---eEEEEEEecccceecCCCcEEEE
Q psy2305           6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGG---IIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      +++|+|||++++++ .|+.|++||+.+++..               .+..++..   .+.+++|       ||||++|++
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~---------------~~~~~~~~~~~~~~~~~~-------SpDg~~la~   76 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY---------------TILSNRTMKSVNASNYGL-------SPDRQFVYL   76 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEE---------------EEECHHHHHTTTCSEEEE-------CTTSSEEEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE---------------EEEccccccccceeeEEE-------CCCCCeEEE
Confidence            67999999766655 6999999999998865               22222222   2556555       889999998


Q ss_pred             eeC---------CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc
Q psy2305          83 SSM---------YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        83 ~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      ++.         ++.|++||+.+++.+..... ..     .+..++|||||+.|+.+.++.|++|++.+ +.....   .
T Consensus        77 ~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~-----~~~~~~~SPDG~~la~~~~~~i~~~~~~~-g~~~~l---~  146 (719)
T 1z68_A           77 ESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PR-----PIQYLCWSPVGSKLAYVYQNNIYLKQRPG-DPPFQI---T  146 (719)
T ss_dssp             EEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CS-----SBCCEEECSSTTCEEEEETTEEEEESSTT-SCCEEC---C
T ss_pred             EecCceeEEeecceEEEEEECCCCccccceec-Cc-----ccccceECCCCCEEEEEECCeEEEEeCCC-CCcEEE---e
Confidence            876         68999999998876211111 11     67899999999999998999999999986 333221   1


Q ss_pred             ccccccce-----------------EEEEEcCCCCcEEEEeecCC----------------------------------e
Q psy2305         154 PWFRKNIV-----------------SAIAINPVHPDICALGTYSK----------------------------------I  182 (334)
Q Consensus       154 ~~~~~~~v-----------------~~~~~~~~~~~~l~~~~~dg----------------------------------~  182 (334)
                      ..++...+                 .+++|+|||+ .|++++.|.                                  .
T Consensus       147 ~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~  225 (719)
T 1z68_A          147 FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR  225 (719)
T ss_dssp             CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE
T ss_pred             cCCCcCCeEcccccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE
Confidence            22322222                 4899999999 888877552                                  7


Q ss_pred             EEEEECCCCCce--------EeeccCCCCeEEEEEccCCcEEEeeec-CC--CeEEEEE----ccCCCccceee----cc
Q psy2305         183 IGLFSDSDGRPL--------FFLKGHNGGITHLEFSSNGILLFSGAR-KD--CEIICWD----LRNPGCILHTF----PR  243 (334)
Q Consensus       183 i~i~d~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d--~~i~iwd----~~~~~~~~~~~----~~  243 (334)
                      |++||+.+++..        ..+.+|...+..++|+||++++++... .+  ..|.+||    ..+ ++....+    ..
T Consensus       226 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~  304 (719)
T 1z68_A          226 IFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEES  304 (719)
T ss_dssp             EEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEEC
T ss_pred             EEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEeccccc
Confidence            899999887653        223467788999999999887776431 12  3488888    655 4433333    12


Q ss_pred             cccCCceE-----EEEecCCCceEEe--eecCC--cEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCC
Q psy2305         244 QVSTNQRV-----YFDLTSCSNYLLS--GNTNG--DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       244 ~~~~~~~~-----~~~~s~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                      +  ...+.     .+.|+|||+.|+.  ...+|  .|.+||+.++            + ...+..+...+..+.+  + +
T Consensus       305 ~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~------------~-~~~lt~~~~~v~~~~~--~-d  366 (719)
T 1z68_A          305 R--TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE------------N-AIQITSGKWEAINIFR--V-T  366 (719)
T ss_dssp             S--SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST------------T-CEECSCSSSCEEEEEE--E-C
T ss_pred             C--CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC------------c-eEecccCceEEEEEEE--E-e
Confidence            2  22332     5679999996654  33444  5777787765            2 3344445556778888  7 7


Q ss_pred             cccceeeEEeeecc
Q psy2305         315 ERDLLVADATCSGQ  328 (334)
Q Consensus       315 ~~~~~~~l~t~~~d  328 (334)
                      +    +.|+..+.+
T Consensus       367 ~----~~i~~~~~~  376 (719)
T 1z68_A          367 Q----DSLFYSSNE  376 (719)
T ss_dssp             S----SEEEEEESC
T ss_pred             C----CEEEEEEec
Confidence            7    555555443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.94  E-value=2.5e-23  Score=175.67  Aligned_cols=252  Identities=13%  Similarity=0.111  Sum_probs=162.4

Q ss_pred             ceeEEEEcCCCcEEEEeeCC----CeEEEEECCCC--CceeeeeCCCCCCCCcceeeeee-eceeEEEEEEecccceecC
Q psy2305           3 IEEDVDEAPDGTCLLTNSND----NHLRTFDLPSE--LHCKSVWRPSNQRPKLNYTLKIK-EGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d----~~v~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~s~   75 (334)
                      .+..++|+|||++|++++.+    +.|.+|++...  +..              ...... +......       +++  
T Consensus        51 ~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~--------------~~~~~~~~~~~p~~-------~~~--  107 (361)
T 3scy_A           51 NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH--------------LLNTQKTMGADPCY-------LTT--  107 (361)
T ss_dssp             CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE--------------EEEEEECSSSCEEE-------EEE--
T ss_pred             CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE--------------EeeEeccCCCCcEE-------EEE--
Confidence            45678999999999998875    79999988763  322              111111 1222222       333  


Q ss_pred             CCcEEEEee-CCCcEEEEeCCCCeeeEEE----cCccc-----cccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCC
Q psy2305          76 FTSYFLCSS-MYAPIHLWDSVGGEIKATY----RPYNQ-----VDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRP  143 (334)
Q Consensus        76 ~~~~l~~~~-~d~~i~iwd~~~~~~~~~~----~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~  143 (334)
                      ++++|++++ .++.|.+|++.....+..+    .....     ......+.+++|+|+|++|+++.  ++.|.+|++...
T Consensus       108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~  187 (361)
T 3scy_A          108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN  187 (361)
T ss_dssp             CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence            777777665 5789999998754322111    11000     00111458899999999777554  789999999864


Q ss_pred             CC----e-eeee---cccccccccceEEEEEcCCCCcEEEEee-cCCeEEEEECCCCCc--eEee---ccCCCCeEEEEE
Q psy2305         144 GR----E-CVSR---NLKPWFRKNIVSAIAINPVHPDICALGT-YSKIIGLFSDSDGRP--LFFL---KGHNGGITHLEF  209 (334)
Q Consensus       144 ~~----~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~---~~~~~~i~~~~~  209 (334)
                      ..    . +...   ..........+..++|+|+|+ ++++++ .++.|.+||+.+++.  +..+   ..+......++|
T Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~  266 (361)
T 3scy_A          188 ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK-FAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHL  266 (361)
T ss_dssp             CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEE
T ss_pred             CCcccccceeecccccceecCCCCCCeEEEEcCCCC-EEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEE
Confidence            32    1 1110   001223345678999999999 776665 689999999987643  2222   233355789999


Q ss_pred             ccCCcEEEeeecC-CCeEEEEEccCC-CccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeC--CCC
Q psy2305         210 SSNGILLFSGARK-DCEIICWDLRNP-GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNV--NTS  279 (334)
Q Consensus       210 ~~~~~~l~~~~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~  279 (334)
                      +|+|++|+++.+. ++.|.+|++... +. +..+........+..++|+|+|++|++++ .++.|.+|++  .++
T Consensus       267 spdg~~l~v~~~~~~~~i~v~~~~~~~g~-~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g  340 (361)
T 3scy_A          267 SPDGKYLYASNRLKADGVAIFKVDETNGT-LTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG  340 (361)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEEECTTTCC-EEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC
T ss_pred             CCCCCEEEEECCCCCCEEEEEEEcCCCCc-EEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC
Confidence            9999999887734 589999999631 33 22221111134566799999999988887 5789999654  455

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=6.2e-24  Score=202.54  Aligned_cols=268  Identities=12%  Similarity=0.049  Sum_probs=197.0

Q ss_pred             ceeEEEEc-CCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEA-PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~s-p~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .|.+++|| |||++|++++ ++.|++|+..++...               .+..+....+..+.|       + +|+.|+
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-------s-dg~~l~  352 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL---------------KVPEPLRIRYVRRGG-------D-TKVAFI  352 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE---------------ECSCCSCEEEEEECS-------S-SEEEEE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE---------------EccCCCcceEEeeeE-------c-CCCeEE
Confidence            58899999 9999999887 789999999877643               222222225555544       8 999999


Q ss_pred             EeeCCCcEE-EEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSMYAPIH-LWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +++.++.+. +|++.+++... +..+..     .+..++|+|||++|++++ ++.|++||+.+ ++...    ....|..
T Consensus       353 ~~s~~~~l~~~~d~~~~~~~~-l~~~~~-----~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~----~~~~~~~  421 (1045)
T 1k32_A          353 HGTREGDFLGIYDYRTGKAEK-FEENLG-----NVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTV----IERSREA  421 (1045)
T ss_dssp             EEETTEEEEEEEETTTCCEEE-CCCCCC-----SEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEE----EEECSSS
T ss_pred             EEECCCceEEEEECCCCCceE-ecCCcc-----ceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEE----eccCCCC
Confidence            988888888 89988765443 333222     789999999999999887 89999999986 44433    3457888


Q ss_pred             ceEEEEEcCCCCcEEEEeecCC----------eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         160 IVSAIAINPVHPDICALGTYSK----------IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                      .+.+++|+|+|+ +|++++.++          .|++||+.+++ ...+..|...+..++|+|+|++|++++ .++...+|
T Consensus       422 ~v~~~~~SpDG~-~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s-~~~~~~~~  498 (1045)
T 1k32_A          422 MITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLS-YRSLDPSP  498 (1045)
T ss_dssp             CCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE-SCCCCCEE
T ss_pred             CccceEECCCCC-eEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe-cccCCcCc
Confidence            899999999999 888776654          89999998876 677778888899999999999999998 77776666


Q ss_pred             EccCCCc-------------------c--c-----------eeecc--------cccCCceEEEEecCCCceEEe-----
Q psy2305         230 DLRNPGC-------------------I--L-----------HTFPR--------QVSTNQRVYFDLTSCSNYLLS-----  264 (334)
Q Consensus       230 d~~~~~~-------------------~--~-----------~~~~~--------~~~~~~~~~~~~s~~~~~l~~-----  264 (334)
                      +......                   +  +           ..+.+        ......+..+.++|+|+++++     
T Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g  578 (1045)
T 1k32_A          499 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG  578 (1045)
T ss_dssp             CSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCC
T ss_pred             chhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccC
Confidence            5432000                   0  0           00000        012345677889999987875     


Q ss_pred             --------eecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeeccee
Q psy2305         265 --------GNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQIT  330 (334)
Q Consensus       265 --------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~  330 (334)
                              ......|.+||+.+++             ...+.   ..+..++|  +|||    ++|++++.|+.
T Consensus       579 ~~~~~~~~~~~~~~l~~~d~~~~~-------------~~~l~---~~v~~~~~--S~DG----~~l~~~~~~~i  630 (1045)
T 1k32_A          579 EFAAYYQGAPEKGVLLKYDVKTRK-------------VTEVK---NNLTDLRL--SADR----KTVMVRKDDGK  630 (1045)
T ss_dssp             SHHHHHHCCCCCEEEEEEETTTCC-------------EEEEE---EEEEEEEE--CTTS----CEEEEEETTSC
T ss_pred             cccccccccCCCceEEEEECCCCc-------------EEEee---cCcceEEE--CCCC----CEEEEEcCCcE
Confidence                    1224578889998862             22232   55788999  9999    99999988743

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=1.5e-24  Score=186.96  Aligned_cols=211  Identities=8%  Similarity=-0.026  Sum_probs=149.2

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE-
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL-   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~-   81 (334)
                      .+..+++++++.++++++.++ +++|+...........................+...|.+++|       +|++++|+ 
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-------spdg~~lav  109 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL-------SCDNLTLSA  109 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE-------CTTSCEEEE
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE-------cCCCCEEEE
Confidence            477899999999999999887 899876422110000000000000011112234566888877       67999999 


Q ss_pred             ---EeeCCCcEEEEeCCCC--------ee---eEEEcCccccccccceeEEEEcCC-CCEEEEee-CCcEEEEEcCCCCC
Q psy2305          82 ---CSSMYAPIHLWDSVGG--------EI---KATYRPYNQVDEVTHAYSLAFSLD-GNKIYAGF-LSEVKIFSTDRPGR  145 (334)
Q Consensus        82 ---~~~~d~~i~iwd~~~~--------~~---~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~~~  145 (334)
                         +++.|+.|++||+.++        +.   ...+..|..     .|.+++|+|+ +.+|++++ ||.|++||+++ +.
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~-~~  183 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG-----MVIDMKWNPTVPSMVAVCLADGSIAVLQVTE-TV  183 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGG-----SEEEEEECSSCTTEEEEEETTSCEEEEEESS-SE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCC-----ceEEEEECCCCCCEEEEEECCCeEEEEEcCC-Cc
Confidence               7888999999998654        22   222333332     8999999998 78888887 99999999996 33


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC-------CCCeEEEEEccCCcEEEe
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-------NGGITHLEFSSNGILLFS  218 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~  218 (334)
                      ...    ...+|...|.+++|+|+|+ +|++|+.||.|++||++ ++....+..|       ...+.+++|++++.++++
T Consensus       184 ~~~----~~~~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~  257 (434)
T 2oit_A          184 KVC----ATLPSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV  257 (434)
T ss_dssp             EEE----EEECGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred             cee----eccCCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEE
Confidence            332    3456888999999999999 99999999999999998 5555555433       237899999999888765


Q ss_pred             eecCCC------eEEEEEccC
Q psy2305         219 GARKDC------EIICWDLRN  233 (334)
Q Consensus       219 ~~~~d~------~i~iwd~~~  233 (334)
                      .+..+|      .+++|+++.
T Consensus       258 ~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          258 YAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             EEETTCCSSSCCEEEEEECCC
T ss_pred             EccCCCccCCCCceEEEEecc
Confidence            442443      389999986

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=2.3e-24  Score=185.81  Aligned_cols=203  Identities=10%  Similarity=0.019  Sum_probs=148.3

Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCCCC----------eeeEEEcCccccccccceeEEEEcCCCCEEE----Eee-CCcE
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSVGG----------EIKATYRPYNQVDEVTHAYSLAFSLDGNKIY----AGF-LSEV  135 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----~~~-d~~i  135 (334)
                      +++++++.++++++.++ +++|+....          .................|.+++|+|++++|+    +++ |+.|
T Consensus        42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v  120 (434)
T 2oit_A           42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII  120 (434)
T ss_dssp             EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEE
T ss_pred             EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceE
Confidence            44577899999999888 888864211          0111111100011122699999999999999    666 8999


Q ss_pred             EEEEcCCC-----C--CeeeeecccccccccceEEEEEcCC-CCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEE
Q psy2305         136 KIFSTDRP-----G--RECVSRNLKPWFRKNIVSAIAINPV-HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHL  207 (334)
Q Consensus       136 ~i~d~~~~-----~--~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  207 (334)
                      ++||+.+.     .  +.+.... .+.+|...|.+++|+|+ +. +|++++.||+|++||++++..+....+|...|.++
T Consensus       121 ~iwd~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~v~~~p~~~~-~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v  198 (434)
T 2oit_A          121 AFFDVRTFSNEAKQQKRPFAYHK-LLKDAGGMVIDMKWNPTVPS-MVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSV  198 (434)
T ss_dssp             EEEEHHHHHCTTCSSCCCSEEEE-CCCSGGGSEEEEEECSSCTT-EEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEE
T ss_pred             EEEEccccccCCcCCcceeeeee-ccCCCCCceEEEEECCCCCC-EEEEEECCCeEEEEEcCCCcceeeccCCCCceeEE
Confidence            99998752     0  1111111 45679999999999998 55 99999999999999999987776677788999999


Q ss_pred             EEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc-----cCCceEEEEecCCCceEEee-ecCC------cEEEEe
Q psy2305         208 EFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV-----STNQRVYFDLTSCSNYLLSG-NTNG------DLSIWN  275 (334)
Q Consensus       208 ~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~~-~~dg------~i~iwd  275 (334)
                      +|+|+|++|++++ .|+.|++||++  +.....+..+.     +...+.++.|++++.++++. ..+|      .+++|+
T Consensus       199 ~wspdg~~lasgs-~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~  275 (434)
T 2oit_A          199 CWSPKGKQLAVGK-QNGTVVQYLPT--LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMAL  275 (434)
T ss_dssp             EECTTSSCEEEEE-TTSCEEEECTT--CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEE
T ss_pred             EEcCCCCEEEEEc-CCCcEEEEccC--CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEE
Confidence            9999999999999 89999999998  33334443332     12378899999998887653 3343      389999


Q ss_pred             CCCC
Q psy2305         276 VNTS  279 (334)
Q Consensus       276 ~~~~  279 (334)
                      +...
T Consensus       276 l~~~  279 (434)
T 2oit_A          276 LPKK  279 (434)
T ss_dssp             CCCT
T ss_pred             eccC
Confidence            9875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=1.2e-23  Score=176.51  Aligned_cols=239  Identities=15%  Similarity=0.076  Sum_probs=171.5

Q ss_pred             EEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE-Eee
Q psy2305           6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL-CSS   84 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~-~~~   84 (334)
                      .+++++++.++++++.++.|++||..+++..              ..+..+....+..       ++++|++++++ +..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~--------------~~~~~~~~~~~~~-------~~~s~dg~~~~v~~~   62 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVY--------------KSCVMPDKFGPGT-------AMMAPDNRTAYVLNN   62 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEE--------------EEEECSSCCSSCE-------EEECTTSSEEEEEET
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEE--------------EEEecCCCCCCce-------eEECCCCCEEEEEeC
Confidence            5678899999999999999999999988765              2332222112333       44588998654 555


Q ss_pred             CCCcEEEEeCCCCeeeEEEcCcccc-ccccceeEEEEcCCCCEEEEee-C------------CcEEEEEcCCCCCeeeee
Q psy2305          85 MYAPIHLWDSVGGEIKATYRPYNQV-DEVTHAYSLAFSLDGNKIYAGF-L------------SEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        85 ~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d------------~~i~i~d~~~~~~~~~~~  150 (334)
                      .++.|.+||+.+++....+...... .....+..++|+|+|++|+++. +            +.|.+||+.+ ++.....
T Consensus        63 ~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~  141 (349)
T 1jmx_B           63 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD-GLEAKPV  141 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG-GGGBCCS
T ss_pred             CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC-cccccee
Confidence            6889999999999887776542210 0001478999999999999776 4            8999999985 3222210


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC-----------------------------
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-----------------------------  201 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------------------------  201 (334)
                        ....+...+.+++|+|+|+ +++ +  ++.|.+||+.+++.+..+..+.                             
T Consensus       142 --~~~~~~~~~~~~~~s~dg~-l~~-~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (349)
T 1jmx_B          142 --RTFPMPRQVYLMRAADDGS-LYV-A--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT  215 (349)
T ss_dssp             --EEEECCSSCCCEEECTTSC-EEE-E--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEE
T ss_pred             --eeccCCCcccceeECCCCc-EEE-c--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeee
Confidence              1122344688999999998 666 3  3349999998887766654321                             


Q ss_pred             ---------------------------------------CCeEEEEEcc-CCcEEEeeecCCCeEEEEEccCCCccceee
Q psy2305         202 ---------------------------------------GGITHLEFSS-NGILLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       202 ---------------------------------------~~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                                                             ..+..++|+| ++++++++   ++.|.+||+.+ ++.+..+
T Consensus       216 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~-~~~~~~~  291 (349)
T 1jmx_B          216 IARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQ-RKLIKAA  291 (349)
T ss_dssp             EEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTT-TEEEEEE
T ss_pred             eeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECcc-CeEEEEE
Confidence                                                   1345677889 99988877   67999999987 6655555


Q ss_pred             cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         242 PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       242 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ..   ...+..++|+|+|++|++++.++.|.+||+.++
T Consensus       292 ~~---~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          292 NL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             cC---CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence            42   234567899999999988888999999999987

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=1.8e-23  Score=174.58  Aligned_cols=238  Identities=12%  Similarity=0.059  Sum_probs=172.1

Q ss_pred             eeEEEEcCCCcEEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           4 EEDVDEAPDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         4 V~~~~~sp~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      +.+++|+|+|++++ ++..++.|.+||+.+++...              .+...+...   ..-.|..++++|++++|++
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~--------------~~~~~~~~~---~~~~~~~~~~s~dg~~l~~   98 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG--------------RIDLSTPEE---RVKSLFGAALSPDGKTLAI   98 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE--------------EEECCBTTE---EEECTTCEEECTTSSEEEE
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe--------------eEEcCCccc---ccccccceEECCCCCEEEE
Confidence            67899999998664 55567899999999887652              222111000   0112455667899998888


Q ss_pred             ee------------CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeee
Q psy2305          83 SS------------MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        83 ~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~  150 (334)
                      +.            .++.|.+||+.+++....+....      .+..++|+|++++|+++ ++.|.+||+.+ ++.....
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~  170 (337)
T 1pby_B           99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR------QITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDK  170 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS------SCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEE
T ss_pred             EecccccccccccccCceEEEEECCCCcEEEEEeCCC------CcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeee
Confidence            85            57999999999988877776422      57789999999988877 78899999986 4444321


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEee-cCC-----------------------eEEEEECCCCCce-EeeccCCCCeE
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGT-YSK-----------------------IIGLFSDSDGRPL-FFLKGHNGGIT  205 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg-----------------------~i~i~d~~~~~~~-~~~~~~~~~i~  205 (334)
                      .  ......+   +.|+|++. .++..+ .++                       .|.+||+.+++.. ..+..+...+.
T Consensus       171 ~--~~~~~~~---~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  244 (337)
T 1pby_B          171 P--IQSWEAE---TYAQPDVL-AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF  244 (337)
T ss_dssp             C--STTTTTT---TBCCCBCC-CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred             e--ccccCCC---ceeCCCcc-EEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCcee
Confidence            1  1111122   37899988 554433 233                       4789999988764 22345666788


Q ss_pred             EEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         206 HLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       206 ~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      +++|+|+|++|+++   ++.|++||+.+ ++.+..+..   ...+.+++|+|+|++|++++.++.|.+||+.++
T Consensus       245 ~~~~s~dg~~l~~~---~~~v~~~d~~~-~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          245 STAVNPAKTRAFGA---YNVLESFDLEK-NASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             EEEECTTSSEEEEE---ESEEEEEETTT-TEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             eEEECCCCCEEEEe---CCeEEEEECCC-CcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence            99999999998877   58999999987 665555543   234567899999999998888999999999987

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1.3e-22  Score=170.46  Aligned_cols=240  Identities=11%  Similarity=0.072  Sum_probs=171.6

Q ss_pred             eeEEEEcCCCcEEEEe-eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           4 EEDVDEAPDGTCLLTN-SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      +..++|+|+|++++++ ..++.|.+||..+++....+.......++.      .....+.++.       ++|+++++++
T Consensus        91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-------~s~dg~~l~~  157 (353)
T 3vgz_A           91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEE------VRPLQPRELV-------ADDATNTVYI  157 (353)
T ss_dssp             CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSS------CCCCEEEEEE-------EETTTTEEEE
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccc------cCCCCCceEE-------ECCCCCEEEE
Confidence            5678999999966554 567999999999988753221110000000      0001134444       4789988777


Q ss_pred             ee--CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          83 SS--MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        83 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++  .++.|.+||..+++....+.....     .+..++|+|++++|+++. ++.+.+||+.+ ++..........++..
T Consensus       158 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~  231 (353)
T 3vgz_A          158 SGIGKESVIWVVDGGNIKLKTAIQNTGK-----MSTGLALDSEGKRLYTTNADGELITIDTAD-NKILSRKKLLDDGKEH  231 (353)
T ss_dssp             EEESSSCEEEEEETTTTEEEEEECCCCT-----TCCCCEEETTTTEEEEECTTSEEEEEETTT-TEEEEEEECCCSSSCC
T ss_pred             EecCCCceEEEEcCCCCceEEEecCCCC-----ccceEEECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCCc
Confidence            65  478899999999998888764333     578899999999998876 89999999986 5544432111223556


Q ss_pred             ceEEEEEcCCCCcEEEEee-cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         160 IVSAIAINPVHPDICALGT-YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      .+.+++|+|+++ .+++++ .++.|.+||+.+++.+..+.....  ..++|+|+|++++++...++.|.+||..+ ++.+
T Consensus       232 ~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~  307 (353)
T 3vgz_A          232 FFINISLDTARQ-RAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKS-YKVV  307 (353)
T ss_dssp             CEEEEEEETTTT-EEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTT-TEEE
T ss_pred             ccceEEECCCCC-EEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCC-CeEE
Confidence            788999999999 655554 459999999999988887765432  57999999997766663689999999987 6666


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecCC
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG  269 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg  269 (334)
                      ..+..   ...+..++|+|+|++|+++..++
T Consensus       308 ~~~~~---~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          308 KTFDT---PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEC---CSEEEEEEECTTSCEEEEEEECC
T ss_pred             EEEec---CCCCCeEEEcCCCCEEEEEEccc
Confidence            55543   34677899999999887776654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.92  E-value=1.7e-22  Score=170.71  Aligned_cols=253  Identities=12%  Similarity=0.106  Sum_probs=166.4

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECC-CCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE--
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLP-SELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY--   79 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~--   79 (334)
                      .+..++|+|||++|++++.+ .|.+|++. +++..              ........+       .|..++++|+|++  
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~--------------~~~~~~~~g-------~~~~~~~spdg~~l~   98 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV--------------HEASHPIGG-------HPRANDADTNTRAIF   98 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE--------------EEEEEECCS-------SGGGGCTTSCCEEEE
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE--------------EeeEeecCC-------CCccEEECCCCCEEE
Confidence            46789999999999998887 99999987 55432              111110001       2456888999994  


Q ss_pred             EEEee-------------CCCcEEEEeCC-CCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCC
Q psy2305          80 FLCSS-------------MYAPIHLWDSV-GGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRP  143 (334)
Q Consensus        80 l~~~~-------------~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~  143 (334)
                      ++++.             .++.+.+|++. +++....+....+. ....+.+++|+|||++|+++.  ++.|.+|++...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~  177 (365)
T 1jof_A           99 LLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ-ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLAS  177 (365)
T ss_dssp             EEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC-CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCC
Confidence            45553             68899999987 46554443321100 111688999999999888764  689999999821


Q ss_pred             CCeeeeecccccccccceEEEEEcCCCCcEEEEeec-CCeEEEEECC--CCCce---Ee---ec----cCCC------Ce
Q psy2305         144 GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY-SKIIGLFSDS--DGRPL---FF---LK----GHNG------GI  204 (334)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~---~~---~~----~~~~------~i  204 (334)
                      ++......+....+...+..++|+|+|+ ++++++. ++.|.+|++.  +++..   ..   +.    +|..      .+
T Consensus       178 g~~~~~~~~~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  256 (365)
T 1jof_A          178 GEVELVGSVDAPDPGDHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR  256 (365)
T ss_dssp             SCEEEEEEEECSSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred             CCEEEeeeEecCCCCCCCCEeEECCCCC-EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccc
Confidence            4432211001112356689999999999 7776654 7899999865  45542   12   21    1222      48


Q ss_pred             EEEE-EccCCcEEEeeecCCC-----eEEEEEccCCCccceeec-ccccCCceEEEEecC---CCceEEeeecC-CcEEE
Q psy2305         205 THLE-FSSNGILLFSGARKDC-----EIICWDLRNPGCILHTFP-RQVSTNQRVYFDLTS---CSNYLLSGNTN-GDLSI  273 (334)
Q Consensus       205 ~~~~-~~~~~~~l~~~~~~d~-----~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~s~---~~~~l~~~~~d-g~i~i  273 (334)
                      ..++ |+|||++|+++.+.+.     .|.+|++...++...... ..........++|+|   +|++|++++.+ +.|.+
T Consensus       257 ~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v  336 (365)
T 1jof_A          257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEI  336 (365)
T ss_dssp             EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEE
T ss_pred             ccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEE
Confidence            8999 9999999887763233     899999963244332111 111122334577899   89999988764 89999


Q ss_pred             EeCCCC
Q psy2305         274 WNVNTS  279 (334)
Q Consensus       274 wd~~~~  279 (334)
                      |++...
T Consensus       337 ~~~~~~  342 (365)
T 1jof_A          337 YRWKDE  342 (365)
T ss_dssp             EEEETT
T ss_pred             EEEchh
Confidence            998764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=1.2e-21  Score=165.37  Aligned_cols=276  Identities=13%  Similarity=0.125  Sum_probs=176.2

Q ss_pred             cCCCcEEEEee----CCCeEEEEECC--CCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305          10 APDGTCLLTNS----NDNHLRTFDLP--SELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus        10 sp~~~~l~~~~----~d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      .+...++++|+    .++.|.+|+++  +++..              ..... +..       .|..++|+|++++|+++
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~--------------~~~~~-~~~-------~p~~l~~spdg~~l~~~   67 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESL--------------PLSDA-EVA-------NPSYLIPSADGKFVYSV   67 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEE--------------EEEEE-ECS-------CCCSEEECTTSSEEEEE
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEE--------------Eeecc-cCC-------CCceEEECCCCCEEEEE
Confidence            34455677774    45689999774  44432              11111 222       34556779999999998


Q ss_pred             eCC----CcEEEEeCCC--CeeeE--EEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecc-
Q psy2305          84 SMY----APIHLWDSVG--GEIKA--TYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNL-  152 (334)
Q Consensus        84 ~~d----~~i~iwd~~~--~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~-  152 (334)
                      +.+    +.|.+|++..  ++...  .......     .+..+++  ++++|+++.  ++.+.+|++...+........ 
T Consensus        68 ~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~-----~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~  140 (361)
T 3scy_A           68 NEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA-----DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVI  140 (361)
T ss_dssp             ECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS-----CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEE
T ss_pred             EccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC-----CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeE
Confidence            875    7999998765  54322  2221111     5667777  888887664  789999999753322110000 


Q ss_pred             cc--------cccccceEEEEEcCCCCcEEEEe-ecCCeEEEEECCCCCc------e-------EeeccCCCCeEEEEEc
Q psy2305         153 KP--------WFRKNIVSAIAINPVHPDICALG-TYSKIIGLFSDSDGRP------L-------FFLKGHNGGITHLEFS  210 (334)
Q Consensus       153 ~~--------~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~------~-------~~~~~~~~~i~~~~~~  210 (334)
                      ..        ..+...+.+++|+|+|+ +++++ ..++.|.+|++.....      +       .....+...+..++|+
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s  219 (361)
T 3scy_A          141 EFKGSGPDKERQTMPHLHCVRITPDGK-YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN  219 (361)
T ss_dssp             ECCCCCSCTTTCSSCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC
T ss_pred             EccCCCCCccccCCCcceEEEECCCCC-EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc
Confidence            00        11223468899999999 55554 4588999999875431      1       1122344567899999


Q ss_pred             cCCcEEEeeecCCCeEEEEEccCCCcc--ceeeccc-ccCCceEEEEecCCCceEEeeecC--CcEEEEeCC--CCCCCC
Q psy2305         211 SNGILLFSGARKDCEIICWDLRNPGCI--LHTFPRQ-VSTNQRVYFDLTSCSNYLLSGNTN--GDLSIWNVN--TSNLPS  283 (334)
Q Consensus       211 ~~~~~l~~~~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d--g~i~iwd~~--~~~~~~  283 (334)
                      |+|++|++++..++.|.+||+.. +..  +..+... ........++|+|+|++|+++..+  +.|.+|++.  ++..  
T Consensus       220 pdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~--  296 (361)
T 3scy_A          220 SDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL--  296 (361)
T ss_dssp             TTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE--
T ss_pred             CCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE--
Confidence            99998887773589999999985 432  2222211 112345689999999998776654  899999996  3311  


Q ss_pred             CCCccccccccceecccccccceeeeccCCCcccceeeEEeee-cceeeee
Q psy2305         284 SPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCS-GQITNVK  333 (334)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~-~d~~i~~  333 (334)
                              +.+..+.. ...+..++|  +|++    ++|++++ .++.+.+
T Consensus       297 --------~~~~~~~~-g~~~~~~~~--spdg----~~l~~~~~~~~~v~v  332 (361)
T 3scy_A          297 --------TKVGYQLT-GIHPRNFII--TPNG----KYLLVACRDTNVIQI  332 (361)
T ss_dssp             --------EEEEEEEC-SSCCCEEEE--CTTS----CEEEEEETTTTEEEE
T ss_pred             --------EEeeEecC-CCCCceEEE--CCCC----CEEEEEECCCCCEEE
Confidence                    23444443 456889999  9999    9888887 5566654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.92  E-value=2.5e-23  Score=177.33  Aligned_cols=268  Identities=12%  Similarity=0.005  Sum_probs=177.3

Q ss_pred             EEEcCCCcEEEEeeC-CC--eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           7 VDEAPDGTCLLTNSN-DN--HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         7 ~~~sp~~~~l~~~~~-d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      .+|||||++|+.++. ++  .|.+||+.+++..               .+...+...+..       ..|+||++.|+.+
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---------------~lt~~~~~~~~~-------~~~spdg~~l~~~   98 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT---------------QLTEGRGDNTFG-------GFLSPDDDALFYV   98 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE---------------ECCCSSCBCSSS-------CEECTTSSEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE---------------EeeeCCCCCccc-------eEEcCCCCEEEEE
Confidence            789999999998886 66  4888899887754               222223222222       3458899999999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeE--EEEcCCCCEEEEe----------------------e-CCcEEEE
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYS--LAFSLDGNKIYAG----------------------F-LSEVKIF  138 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~----------------------~-d~~i~i~  138 (334)
                      +.++.|++||+.+++....+..+..     .+..  ..++|++++++..                      . +..|.+|
T Consensus        99 ~~~~~l~~~d~~~g~~~~~~~~~~~-----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (388)
T 3pe7_A           99 KDGRNLMRVDLATLEENVVYQVPAE-----WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV  173 (388)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred             eCCCeEEEEECCCCcceeeeechhh-----cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence            9999999999999887666654332     3333  3458999988732                      1 4678999


Q ss_pred             EcCCCCCeeeeecccccccccceEEEEEcC-CCCcEEEEeecC------CeEEEEECCCCCceEeeccCC--CCeEEEEE
Q psy2305         139 STDRPGRECVSRNLKPWFRKNIVSAIAINP-VHPDICALGTYS------KIIGLFSDSDGRPLFFLKGHN--GGITHLEF  209 (334)
Q Consensus       139 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~i~~~~~  209 (334)
                      |+.+ ++. .    .+..+...+..+.|+| +|+ .|+....+      ..|.++|...++. ..+..+.  ..+..++|
T Consensus       174 d~~~-g~~-~----~l~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~  245 (388)
T 3pe7_A          174 DLKT-GES-T----VILQENQWLGHPIYRPYDDS-TVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFW  245 (388)
T ss_dssp             ETTT-CCE-E----EEEEESSCEEEEEEETTEEE-EEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEE
T ss_pred             ECCC-Cce-E----EeecCCccccccEECCCCCC-EEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceE
Confidence            9886 433 2    2445667789999999 998 77766543      3788888765544 4444444  25778999


Q ss_pred             ccCCcEEEeeecCCC----eEEEEEccCCCcc--ceeecccccC-CceEEEEecCCCceEEee---------ecCCcEEE
Q psy2305         210 SSNGILLFSGARKDC----EIICWDLRNPGCI--LHTFPRQVST-NQRVYFDLTSCSNYLLSG---------NTNGDLSI  273 (334)
Q Consensus       210 ~~~~~~l~~~~~~d~----~i~iwd~~~~~~~--~~~~~~~~~~-~~~~~~~~s~~~~~l~~~---------~~dg~i~i  273 (334)
                      +|||+.|+..+..++    .|++||+.+ ++.  +..+...... .......|+|||+.|+..         ..+..|++
T Consensus       246 spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~  324 (388)
T 3pe7_A          246 VPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV  324 (388)
T ss_dssp             CTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred             CCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence            999998766541222    499999987 442  2222211000 000112589999988754         44668999


Q ss_pred             EeCCCCCCCCCCCccccccccceeccccc-----------ccceeeeccCCCcccceeeEEeeec-ce
Q psy2305         274 WNVNTSNLPSSPYEESVQEPLYKFSAHQD-----------CTNGVRWKHHKFERDLLVADATCSG-QI  329 (334)
Q Consensus       274 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~i~~~~~~~s~~~~~~~~~l~t~~~-d~  329 (334)
                      ||+.++             ....+..+..           .+..++|  +|||    +.|+.++. +|
T Consensus       325 ~d~~~~-------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~--spDg----~~l~~~s~~~g  373 (388)
T 3pe7_A          325 FNMKNG-------------TQHRVARHDTSWKVFEGDRQVTHPHPSF--TPDD----KQILFTSDVHG  373 (388)
T ss_dssp             EETTTT-------------EEEEEEECCCCCCCBTTBSSTTCCCCEE--CTTS----SEEEEEECTTS
T ss_pred             EeccCC-------------ceEEeccccCcccccccccccCCCCccC--CCCC----CEEEEEecCCC
Confidence            999986             2334444444           5788999  9999    88777664 44

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.91  E-value=3e-22  Score=184.45  Aligned_cols=245  Identities=10%  Similarity=0.040  Sum_probs=163.6

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      ..+++|+|||++++++  |+.|++||+.+++...              .+..+... ...+++  ..++|||||++|+.+
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~--------------~~~~~~~~-~~~~~~--~~~~~Spdg~~l~~~   79 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSV--------------FLENSTFD-EFGHSI--NDYSISPDGQFILLE   79 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEE--------------EECTTTTT-TCCSCC--CEEEECTTSSEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceEE--------------EEechhhh-hhcccc--cceEECCCCCEEEEE
Confidence            5679999999999886  8999999999988652              22222111 100000  113458899999998


Q ss_pred             eCC---------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccc
Q psy2305          84 SMY---------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        84 ~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      +.+         +.+.+||+.+++... +..+..     .+...+|||||+.|+.+.++.|++|++.. +.....   ..
T Consensus        80 ~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~-----~~~~~~~SPdG~~la~~~~~~i~~~~~~~-~~~~~l---t~  149 (740)
T 4a5s_A           80 YNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPN-----NTQWVTWSPVGHKLAYVWNNDIYVKIEPN-LPSYRI---TW  149 (740)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEECC-SSCCCT-----TEEEEEECSSTTCEEEEETTEEEEESSTT-SCCEEC---CS
T ss_pred             ECCeeeEEEccceEEEEEECCCCcEEE-cccCCC-----cceeeEECCCCCEEEEEECCeEEEEECCC-CceEEE---cC
Confidence            875         567799999987643 333222     78999999999999988999999999986 333221   22


Q ss_pred             cccccce-----------------EEEEEcCCCCcEEEEeecCC------------------------------------
Q psy2305         155 WFRKNIV-----------------SAIAINPVHPDICALGTYSK------------------------------------  181 (334)
Q Consensus       155 ~~~~~~v-----------------~~~~~~~~~~~~l~~~~~dg------------------------------------  181 (334)
                      .++...+                 ..+.|+|||+ .|+.++.|.                                    
T Consensus       150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~  228 (740)
T 4a5s_A          150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTV  228 (740)
T ss_dssp             CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEE
T ss_pred             CCCccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCee
Confidence            3332222                 3589999999 888764321                                    


Q ss_pred             eEEEEECCC---CC--ceEeec------cCCCCeEEEEEccCCcEEEeeec---CCCeEEEEEccCCCc------cceee
Q psy2305         182 IIGLFSDSD---GR--PLFFLK------GHNGGITHLEFSSNGILLFSGAR---KDCEIICWDLRNPGC------ILHTF  241 (334)
Q Consensus       182 ~i~i~d~~~---~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~---~d~~i~iwd~~~~~~------~~~~~  241 (334)
                      .|++||+.+   ++  ....+.      +|...+..++|+|||+.++....   .+..|++||+.+ ++      ....+
T Consensus       229 ~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~~~~~~~~~~l  307 (740)
T 4a5s_A          229 KFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSGRWNCLVARQH  307 (740)
T ss_dssp             EEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTTEEEECGGGCE
T ss_pred             EEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-CccccceeEEEEe
Confidence            588899988   63  233343      37778999999999996665431   234799999987 44      12222


Q ss_pred             cccccCCce-----EEEEecCCCceEE-eeec-C--CcEEEEeCCCC
Q psy2305         242 PRQVSTNQR-----VYFDLTSCSNYLL-SGNT-N--GDLSIWNVNTS  279 (334)
Q Consensus       242 ~~~~~~~~~-----~~~~~s~~~~~l~-~~~~-d--g~i~iwd~~~~  279 (334)
                      ....+...+     ....|+|||+.|+ ..+. +  ..|++||+.++
T Consensus       308 ~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          308 IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence            111112222     2567999999877 5553 3  46888898875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=1.1e-22  Score=182.58  Aligned_cols=231  Identities=10%  Similarity=0.015  Sum_probs=167.3

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeC-CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee----
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSM-YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----  131 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----  131 (334)
                      ...+|++++|       +|||+.|++++. ||+++||++.+++..+ +..+.. .   .+..++|+|| +.+++++    
T Consensus        20 ~~~~~~~~~~-------~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~-~---~~~~~~~spd-~~l~~~~~~~g   86 (582)
T 3o4h_A           20 IAVEKYSLQG-------VVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPI-N---SVLDPHYGVG-RVILVRDVSKG   86 (582)
T ss_dssp             HHSCEEEEEE-------EETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCC-S---EECEECTTCS-EEEEEEECSTT
T ss_pred             hccchheeec-------CCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccc-c---ccccccCCCC-eEEEEeccCCC
Confidence            3456888777       679999999876 9999999986665544 333220 1   6889999999 6666553    


Q ss_pred             CCcEEEEEcCC--CCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEE
Q psy2305         132 LSEVKIFSTDR--PGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEF  209 (334)
Q Consensus       132 d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~  209 (334)
                      +....+|.++.  .+....    ....  ..+...+|+|+++..+++...++.+.+||+.+++...... +..  .+++|
T Consensus        87 ~~~~~l~~~~~~~~g~~~~----l~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~  157 (582)
T 3o4h_A           87 AEQHALFKVNTSRPGEEQR----LEAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVS  157 (582)
T ss_dssp             SCCEEEEEEETTSTTCCEE----CTTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEE
T ss_pred             CcceEEEEEeccCCCcccc----ccCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEE
Confidence            35566766654  343332    1111  1234668888886445555555666699998887655444 333  78999


Q ss_pred             ccCCcEEEeeecCC----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC--cEEEEeCCCCCCCC
Q psy2305         210 SSNGILLFSGARKD----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG--DLSIWNVNTSNLPS  283 (334)
Q Consensus       210 ~~~~~~l~~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~  283 (334)
                      +|||++|++++ .+    +.|++||+.+ ++ ...+..+  ...+..++|||||++|+++..++  .|++||+.++    
T Consensus       158 spDG~~la~~~-~~~~~~~~i~~~d~~~-g~-~~~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~----  228 (582)
T 3o4h_A          158 DIRGDLIAGLG-FFGGGRVSLFTSNLSS-GG-LRVFDSG--EGSFSSASISPGMKVTAGLETAREARLVTVDPRDG----  228 (582)
T ss_dssp             EEETTEEEEEE-EEETTEEEEEEEETTT-CC-CEEECCS--SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC----
T ss_pred             CCCCCEEEEEE-EcCCCCeEEEEEcCCC-CC-ceEeecC--CCccccceECCCCCEEEEccCCCeeEEEEEcCCCC----
Confidence            99999999887 56    7899999986 44 3455544  45678899999999999888888  8999999987    


Q ss_pred             CCCccccccccceecccccccceee--------eccCCCcccceeeEEeeecceeeee
Q psy2305         284 SPYEESVQEPLYKFSAHQDCTNGVR--------WKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                              +.. .+..|...+..++        |  +|||    .++++++.|+++++
T Consensus       229 --------~~~-~~~~~~~~~~~~~~~~~~~~~~--spdg----~~~~~~~~~g~~~l  271 (582)
T 3o4h_A          229 --------SVE-DLELPSKDFSSYRPTAITWLGY--LPDG----RLAVVARREGRSAV  271 (582)
T ss_dssp             --------CEE-ECCCSCSHHHHHCCSEEEEEEE--CTTS----CEEEEEEETTEEEE
T ss_pred             --------cEE-EccCCCcChhhhhhccccceeE--cCCC----cEEEEEEcCCcEEE
Confidence                    444 6677777788888        9  9999    99999999998764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=7.5e-22  Score=165.56  Aligned_cols=228  Identities=11%  Similarity=0.055  Sum_probs=165.7

Q ss_pred             cceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCee
Q psy2305          70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGREC  147 (334)
Q Consensus        70 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~  147 (334)
                      .++++++++++++++.++.|.+||+.+++.+..+..... .   .+..++|+|++++++++ . ++.|.+||+.+ ++..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~---~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~   78 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-F---GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNT   78 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-C---SSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-C---CCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEE
Confidence            456688999999999999999999999998877764321 0   36789999999877644 4 79999999986 4444


Q ss_pred             eeeccccccc-----ccceEEEEEcCCCCcEEEEeecC------------CeEEEEECCCCCc---eEeeccCCCCeEEE
Q psy2305         148 VSRNLKPWFR-----KNIVSAIAINPVHPDICALGTYS------------KIIGLFSDSDGRP---LFFLKGHNGGITHL  207 (334)
Q Consensus       148 ~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~---~~~~~~~~~~i~~~  207 (334)
                      ...   ...+     ...+.+++|+|+|+ ++++++.+            +.|.+||+.+++.   +..+. +...+.++
T Consensus        79 ~~~---~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~  153 (349)
T 1jmx_B           79 FHA---NLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLM  153 (349)
T ss_dssp             EEE---ESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCE
T ss_pred             EEE---EcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccce
Confidence            321   1111     23478899999999 88888765            8999999988543   33444 33468899


Q ss_pred             EEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc------------------------------------------
Q psy2305         208 EFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV------------------------------------------  245 (334)
Q Consensus       208 ~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------------------------------------  245 (334)
                      +|+|+|+ +++++ .+  |++||+.+ ++....+....                                          
T Consensus       154 ~~s~dg~-l~~~~-~~--i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  228 (349)
T 1jmx_B          154 RAADDGS-LYVAG-PD--IYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT  228 (349)
T ss_dssp             EECTTSC-EEEES-SS--EEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred             eECCCCc-EEEcc-Cc--EEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence            9999999 66554 33  99999986 54444433211                                          


Q ss_pred             ------------------------cCCceEEEEecC-CCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccc
Q psy2305         246 ------------------------STNQRVYFDLTS-CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH  300 (334)
Q Consensus       246 ------------------------~~~~~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  300 (334)
                                              .......++|+| ++++++++  ++.|.+||+.++            +.+..+.. 
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~------------~~~~~~~~-  293 (349)
T 1jmx_B          229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR------------KLIKAANL-  293 (349)
T ss_dssp             CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT------------EEEEEEEC-
T ss_pred             cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC------------eEEEEEcC-
Confidence                                    001234567889 99999888  889999999987            45555543 


Q ss_pred             ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         301 QDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ...+..++|  +|++    ++|++++.++.+.+
T Consensus       294 ~~~~~~~~~--s~dg----~~l~~~~~~~~v~v  320 (349)
T 1jmx_B          294 DHTYYCVAF--DKKG----DKLYLGGTFNDLAV  320 (349)
T ss_dssp             SSCCCEEEE--CSSS----SCEEEESBSSEEEE
T ss_pred             CCCccceEE--CCCC----CEEEEecCCCeEEE
Confidence            345789999  9999    88888888887764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.90  E-value=2.7e-21  Score=163.46  Aligned_cols=241  Identities=10%  Similarity=0.022  Sum_probs=161.6

Q ss_pred             ccceecCCCcEEEEeeCCCcEEEEeCC-CCeeeEEEcCccccccccceeEEEEcCCCCE--EEEe--------------e
Q psy2305          69 KTSSIDGFTSYFLCSSMYAPIHLWDSV-GGEIKATYRPYNQVDEVTHAYSLAFSLDGNK--IYAG--------------F  131 (334)
Q Consensus        69 ~~~~~s~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~--------------~  131 (334)
                      ..++++|++++|++++.+ .|.+|++. +++.......... .   .+..++|+|+|++  ++++              .
T Consensus        43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-G---HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-S---SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-C---CCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            345668999999988887 89999987 7776543321101 1   2456899999994  4443              4


Q ss_pred             CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee-cCCeEEEEECC-CCCce--Eeec--cCCCCeE
Q psy2305         132 LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT-YSKIIGLFSDS-DGRPL--FFLK--GHNGGIT  205 (334)
Q Consensus       132 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~--~~~~--~~~~~i~  205 (334)
                      ++.+.+|++...+............+...+.+++|+|+|+ +++++. .++.|++||+. +++..  ..+.  .|...+.
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            7889999997535443221100012456789999999999 777665 36799999998 66643  2333  2356789


Q ss_pred             EEEEccCCcEEEeeecCCCeEEEEEccCC-Cccc---eeecc---cccC-C-------ceEEEE-ecCCCceEEeeecC-
Q psy2305         206 HLEFSSNGILLFSGARKDCEIICWDLRNP-GCIL---HTFPR---QVST-N-------QRVYFD-LTSCSNYLLSGNTN-  268 (334)
Q Consensus       206 ~~~~~~~~~~l~~~~~~d~~i~iwd~~~~-~~~~---~~~~~---~~~~-~-------~~~~~~-~s~~~~~l~~~~~d-  268 (334)
                      .++|+|+|++|++++..++.+.+|++... ++..   ..+..   .... .       .+..++ |+|||++|++++.+ 
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            99999999999888734789999987631 3321   11211   1001 1       467899 99999998876543 


Q ss_pred             C-----cEEEEeCC-CCCCCCCCCccccccccc---eecccccccceeeeccCC---CcccceeeEEeeecc-eeeee
Q psy2305         269 G-----DLSIWNVN-TSNLPSSPYEESVQEPLY---KFSAHQDCTNGVRWKHHK---FERDLLVADATCSGQ-ITNVK  333 (334)
Q Consensus       269 g-----~i~iwd~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~s~---~~~~~~~~l~t~~~d-~~i~~  333 (334)
                      +     .|.+|++. ++            +...   ....+...+..++|  +|   ++    ++|++++.+ +.|.+
T Consensus       277 ~~~~~~~i~v~~~~~~g------------~~~~~~~~~~~~~~~~~~~a~--sp~~~dg----~~l~v~~~~~~~v~v  336 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCG------------SIEKQLFLSPTPTSGGHSNAV--SPCPWSD----EWMAITDDQEGWLEI  336 (365)
T ss_dssp             STTSCCEEEEEEECTTS------------CEEEEEEEEECSSCCTTCCCE--EECTTCT----TEEEEECSSSCEEEE
T ss_pred             CCCCCCeEEEEEECCCC------------CEEEeeeeeecCCCCccccee--cCCCcCC----CEEEEEEcCCCeEEE
Confidence            2     89999996 44            2221   13334456789999  99   89    899888764 66654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=6.3e-22  Score=181.97  Aligned_cols=274  Identities=11%  Similarity=0.033  Sum_probs=177.4

Q ss_pred             eeEEEEcCCCcEEEEeeC---------CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceec
Q psy2305           4 EEDVDEAPDGTCLLTNSN---------DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSID   74 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~---------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s   74 (334)
                      |.+++|||||++||+++.         ++.|++||+.+++...            ...+    ...+..++|       |
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~------------~~~l----~~~~~~~~~-------S  118 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR------------GNEL----PRPIQYLCW-------S  118 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------------SSCC----CSSBCCEEE-------C
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc------------ceec----CcccccceE-------C
Confidence            789999999999998876         7899999999887520            0011    123444455       8


Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccc-----cc---------cceeEEEEcCCCCEEEEee-C-C-----
Q psy2305          75 GFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVD-----EV---------THAYSLAFSLDGNKIYAGF-L-S-----  133 (334)
Q Consensus        75 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----~~---------~~v~~~~~~~~~~~l~~~~-d-~-----  133 (334)
                      |||+.|+++. ++.|++|++.+++....... .+..     ..         ....+++|+|||++|++++ | +     
T Consensus       119 PDG~~la~~~-~~~i~~~~~~~g~~~~l~~~-~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~  196 (719)
T 1z68_A          119 PVGSKLAYVY-QNNIYLKQRPGDPPFQITFN-GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVI  196 (719)
T ss_dssp             SSTTCEEEEE-TTEEEEESSTTSCCEECCCC-CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEE
T ss_pred             CCCCEEEEEE-CCeEEEEeCCCCCcEEEecC-CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceE
Confidence            8999999886 78999999988876543211 1111     00         0125899999999999765 4 2     


Q ss_pred             ----------------------------cEEEEEcCCCCCee---ee-ecccccccccceEEEEEcCCCCcEEEEeecC-
Q psy2305         134 ----------------------------EVKIFSTDRPGREC---VS-RNLKPWFRKNIVSAIAINPVHPDICALGTYS-  180 (334)
Q Consensus       134 ----------------------------~i~i~d~~~~~~~~---~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-  180 (334)
                                                  .|++||+.+ +...   .. .+..+.+|...+..++|+||++ ++++.... 
T Consensus       197 ~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~  274 (719)
T 1z68_A          197 AYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRV  274 (719)
T ss_dssp             EEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESS
T ss_pred             EeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccc
Confidence                                        788999885 3321   10 0012346778899999999987 77664332 


Q ss_pred             ---CeEEEEE----CCCCCceEee----ccCCCCeE-----EEEEccCCcEEEe--eecCCC--eEEEEEccCCCcccee
Q psy2305         181 ---KIIGLFS----DSDGRPLFFL----KGHNGGIT-----HLEFSSNGILLFS--GARKDC--EIICWDLRNPGCILHT  240 (334)
Q Consensus       181 ---g~i~i~d----~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~--~~~~d~--~i~iwd~~~~~~~~~~  240 (334)
                         ..|.+||    ..+++....+    .+|.+.+.     .+.|+|||+.|+.  .. .++  .|.+||+.. +. ...
T Consensus       275 ~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~g~~~l~~~~~~~-~~-~~~  351 (719)
T 1z68_A          275 QNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD-KDGYKHIHYIKDTV-EN-AIQ  351 (719)
T ss_dssp             TTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC-TTSCEEEEEESSCS-TT-CEE
T ss_pred             cCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc-cCCceEEEEEECCC-Cc-eEe
Confidence               3588999    8777665555    36666666     7899999996654  33 455  466666654 33 444


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCC--CCCCCCCCcccccccc-ceecccccccceeeeccC
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNT--SNLPSSPYEESVQEPL-YKFSAHQDCTNGVRWKHH  312 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~s  312 (334)
                      +..+  ...+..+.++ +++.|+..+.+     +..++|.+..  +...        .+.+ ..+.+|...+..+.|  +
T Consensus       352 lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~~~l~~~~~~~~~~~~~~~~--s  418 (719)
T 1z68_A          352 ITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPS--------KKCVTCHLRKERCQYYTASF--S  418 (719)
T ss_dssp             CSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCC--------EEESSTTTTTTTBCBEEEEE--C
T ss_pred             cccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCC--------ceeccCccCCCCCceEEEEE--C
Confidence            4432  3335555566 77766655544     7888998764  2100        0111 112235566788999  9


Q ss_pred             CCcccceeeEEe
Q psy2305         313 KFERDLLVADAT  324 (334)
Q Consensus       313 ~~~~~~~~~l~t  324 (334)
                      |++    ++++.
T Consensus       419 ~dg----~~l~~  426 (719)
T 1z68_A          419 DYA----KYYAL  426 (719)
T ss_dssp             GGG----SSEEE
T ss_pred             CCC----CEEEE
Confidence            999    77664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.88  E-value=4.7e-19  Score=144.53  Aligned_cols=247  Identities=12%  Similarity=0.135  Sum_probs=172.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..+.+++++|+|+++++...++.|++|+.. ++....+.....         ...+...+..+++.      .+++++++
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~---------~~~~~~~p~~i~~~------~~~g~l~v   93 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK---------RDSQLLYPNRVAVV------RNSGDIIV   93 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS---------STTCBSSEEEEEEE------TTTTEEEE
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC---------CcccccCceEEEEE------cCCCeEEE
Confidence            457899999999988888889999999987 333311110000         00011234444431      35777666


Q ss_pred             EeeC-CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSM-YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      +... ++.|.+|| .+++.+..+.... ..   .+..++++|+|+++++.. ++.|.+||..  ++.....  ....+..
T Consensus        94 ~~~~~~~~i~~~d-~~g~~~~~~~~~~-~~---~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~--~~~~~~~  164 (286)
T 1q7f_A           94 TERSPTHQIQIYN-QYGQFVRKFGATI-LQ---HPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKF--GCSKHLE  164 (286)
T ss_dssp             EECGGGCEEEEEC-TTSCEEEEECTTT-CS---CEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEE--ECTTTCS
T ss_pred             EcCCCCCEEEEEC-CCCcEEEEecCcc-CC---CceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEe--CCCCccC
Confidence            6643 78999999 5677776664321 11   678999999998777765 7899999975  4444321  1123445


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC--CCCeEEEEEccCCcEEEeeecCCC-eEEEEEccCCCc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH--NGGITHLEFSSNGILLFSGARKDC-EIICWDLRNPGC  236 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~d~-~i~iwd~~~~~~  236 (334)
                      .+.+++++|+|+ ++++...++.|++||. +++.+..+..+  ...+..++++|+|+++++.. .++ .|.+||..  ++
T Consensus       165 ~p~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i~~~~~~--g~  239 (286)
T 1q7f_A          165 FPNGVVVNDKQE-IFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNLTIFTQD--GQ  239 (286)
T ss_dssp             SEEEEEECSSSE-EEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEEEEECTT--SC
T ss_pred             CcEEEEECCCCC-EEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeC-CCCEEEEEECCC--CC
Confidence            689999999998 8887778999999997 56666666433  36789999999998888777 675 99999964  55


Q ss_pred             cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .+..+..+.....+..++++|+|+++++ +.++.|++|++...
T Consensus       240 ~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          240 LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            5666655433445678999999987777 57899999998764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.88  E-value=1.2e-21  Score=167.24  Aligned_cols=263  Identities=10%  Similarity=-0.050  Sum_probs=174.0

Q ss_pred             eeEEEEcCCCcEEEEeeCC---CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           4 EEDVDEAPDGTCLLTNSND---NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +..++|||||++|+.....   ..|.+|++.+++..               .+..+.....       ..+.|+|||+.|
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~---------------~l~~~~~~~~-------~~~~~spdg~~l   95 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV---------------QLTEGKGDNT-------FGGFISTDERAF   95 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE---------------ECCCSSCBCT-------TTCEECTTSSEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE---------------EeecCCCCcc-------ccceECCCCCEE
Confidence            5678999999998876543   47888898887653               1221111111       113458899999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeE-------------------EEEcCCCCEEEEe------eCCcE
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYS-------------------LAFSLDGNKIYAG------FLSEV  135 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~------~d~~i  135 (334)
                      +.++.++.|.+||+.+++.......+..     ....                   +.|+|+++.++..      .+..|
T Consensus        96 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l  170 (396)
T 3c5m_A           96 FYVKNELNLMKVDLETLEEQVIYTVDEE-----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL  170 (396)
T ss_dssp             EEEETTTEEEEEETTTCCEEEEEECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred             EEEEcCCcEEEEECCCCCcEEEEecccc-----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence            9999888999999988876655543221     1111                   3568888877642      25689


Q ss_pred             EEEEcCCCCCeeeeecccccccccceEEEEEcC-CCCcEEEEeecC------CeEEEEECCCCCceEeeccC--CCCeEE
Q psy2305         136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINP-VHPDICALGTYS------KIIGLFSDSDGRPLFFLKGH--NGGITH  206 (334)
Q Consensus       136 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~--~~~i~~  206 (334)
                      .+||+.+ ++...     +..+...+..+.|+| ++. .|+..+.+      ..|.+||+..++.. .+..+  ...+..
T Consensus       171 ~~~d~~~-g~~~~-----~~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~  242 (396)
T 3c5m_A          171 IKVDIET-GELEV-----IHQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTH  242 (396)
T ss_dssp             EEEETTT-CCEEE-----EEEESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEE
T ss_pred             EEEECCC-CcEEe-----eccCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccc
Confidence            9999985 43322     334667789999999 777 66655443      36889998765543 33333  235788


Q ss_pred             EEEccCCcEEEeeecCC-----CeEEEEEccCCCccceeecccccCCceEEEEecC-CCceEEeee--------------
Q psy2305         207 LEFSSNGILLFSGARKD-----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTS-CSNYLLSGN--------------  266 (334)
Q Consensus       207 ~~~~~~~~~l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~~~--------------  266 (334)
                      ++|+|+|++|+..+ .+     +.|++||+.+ ++... +...  .. .. +.|+| +|+++++++              
T Consensus       243 ~~~spdg~~l~~~~-~~~~~~~~~l~~~d~~~-g~~~~-l~~~--~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~  315 (396)
T 3c5m_A          243 EFWIPDGSAMAYVS-YFKGQTDRVIYKANPET-LENEE-VMVM--PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYN  315 (396)
T ss_dssp             EEECTTSSCEEEEE-EETTTCCEEEEEECTTT-CCEEE-EEEC--CS-EE-EEEECSSSSEEEEEECCC----------C
T ss_pred             eEECCCCCEEEEEe-cCCCCccceEEEEECCC-CCeEE-eeeC--CC-CC-CCccCCCCceEEEecCCcceeeccccccc
Confidence            99999999887775 33     4599999986 44322 2211  11 12 77999 999888754              


Q ss_pred             --cCCcEEEEeCCCCCCCCCCCccccccccceeccccc-----------ccceeeeccCCCcccceeeEEeeec
Q psy2305         267 --TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD-----------CTNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       267 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                        .++.|++||+.+++             ...+..+..           .+..++|  +|++    +.|+.++.
T Consensus       316 ~~~~~~i~~~d~~~~~-------------~~~l~~~~~~~~~~~~~~~~~~~~~~~--s~dg----~~l~~~s~  370 (396)
T 3c5m_A          316 IENDPFLYVLNTKAKS-------------AQKLCKHSTSWDVLDGDRQITHPHPSF--TPND----DGVLFTSD  370 (396)
T ss_dssp             CCCCCEEEEEETTTTB-------------CCEEEECCCCCCCBTTBSSTTCCCCEE--CTTS----SEEEEEEC
T ss_pred             cCCCCcEEEEecccCc-------------eEEccCCCCccccccccccCCCCCceE--ccCC----CeEEEEec
Confidence              34789999998863             223433333           2567899  9999    88877765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.87  E-value=2e-19  Score=149.66  Aligned_cols=253  Identities=11%  Similarity=0.082  Sum_probs=176.6

Q ss_pred             CCceeEEEEcCCCcEEEEeeCC------------------------CeEEEEECCCCCceeeeeCCCCCCCCcceeeeee
Q psy2305           1 MDIEEDVDEAPDGTCLLTNSND------------------------NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK   56 (334)
Q Consensus         1 ~d~V~~~~~sp~~~~l~~~~~d------------------------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   56 (334)
                      +..|.+++++|+|+++++...+                        +.|.+||..+++...              .+...
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~--------------~~~~~   88 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ--------------SSGKN   88 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE--------------EECTT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe--------------ccCCC
Confidence            4578999999999988887776                        478999988777541              11111


Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe-eeEEEcCccc----cccccceeEEEEcC-CCCEEEEe
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE-IKATYRPYNQ----VDEVTHAYSLAFSL-DGNKIYAG  130 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~----~~~~~~v~~~~~~~-~~~~l~~~  130 (334)
                      +-....       .++++++|+++++...++.|++||..... .+..+.....    ......+..++++| ++.++++.
T Consensus        89 ~~~~p~-------gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d  161 (329)
T 3fvz_A           89 LFYLPH-------GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD  161 (329)
T ss_dssp             TCSSEE-------EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE
T ss_pred             ccCCce-------EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe
Confidence            112233       35558899988888888999999975442 4555532110    11122678999999 78888877


Q ss_pred             e--CCcEEEEEcCCCCCeeeeecccc------cccccceEEEEEcCC-CCcEEEEeecCCeEEEEECCCCCceEeec--c
Q psy2305         131 F--LSEVKIFSTDRPGRECVSRNLKP------WFRKNIVSAIAINPV-HPDICALGTYSKIIGLFSDSDGRPLFFLK--G  199 (334)
Q Consensus       131 ~--d~~i~i~d~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~  199 (334)
                      +  ++.|++|+..  +.........-      .++-.....++++|+ +. ++++...++.|++||..+++.+..+.  .
T Consensus       162 ~~~~~~I~~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~-l~v~d~~~~~I~~~~~~~G~~~~~~~~~~  238 (329)
T 3fvz_A          162 GYCNSRIVQFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQ-LCVADRENGRIQCFKTDTKEFVREIKHAS  238 (329)
T ss_dssp             CSSCCEEEEECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTE-EEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred             CCCCCeEEEEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCE-EEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence            3  7899999954  55544311000      122344889999999 55 77777888999999998888888773  4


Q ss_pred             CCCCeEEEEEcc------CCcEEEeeecCCCeEEEEEccCCCccceeecc-cccCCceEEEEecCCCceEEeeecCCcEE
Q psy2305         200 HNGGITHLEFSS------NGILLFSGARKDCEIICWDLRNPGCILHTFPR-QVSTNQRVYFDLTSCSNYLLSGNTNGDLS  272 (334)
Q Consensus       200 ~~~~i~~~~~~~------~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  272 (334)
                      +...+..++|+|      +|+.+++.. .+..|++||..+ ++.+..+.. ......+..++++|+|.++++...+++|+
T Consensus       239 ~~~~~~~~~~~pg~~~~~~g~~~v~~~-~~~~v~~~~~~~-g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          239 FGRNVFAISYIPGFLFAVNGKPYFGDQ-EPVQGFVMNFSS-GEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             TTTCEEEEEEETTEEEEEECCCCTTCS-CCCCEEEEETTT-CCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             cCCCcceeeecCCEEEEeCCCEEeccC-CCcEEEEEEcCC-CeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence            566788999999      333333333 456899999987 666666632 11244577899999998888888899999


Q ss_pred             EEeCCCC
Q psy2305         273 IWNVNTS  279 (334)
Q Consensus       273 iwd~~~~  279 (334)
                      +|++...
T Consensus       317 ~~~~~~~  323 (329)
T 3fvz_A          317 KFTLTEK  323 (329)
T ss_dssp             EEEEEEC
T ss_pred             EEeCCcc
Confidence            9998753

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.87  E-value=6.7e-20  Score=168.82  Aligned_cols=234  Identities=11%  Similarity=0.001  Sum_probs=156.8

Q ss_pred             eecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C---------CcEEEEEcC
Q psy2305          72 SIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L---------SEVKIFSTD  141 (334)
Q Consensus        72 ~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---------~~i~i~d~~  141 (334)
                      .|+||+++++++  |+.|++||+.+++....+..+...........++|||||++|+.++ +         +.+.+||+.
T Consensus        23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~  100 (740)
T 4a5s_A           23 RWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN  100 (740)
T ss_dssp             EECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             EECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC
Confidence            347899988886  8999999999999877777654322111234589999999999776 3         667899998


Q ss_pred             CCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-ccCCCCe----------------
Q psy2305         142 RPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-KGHNGGI----------------  204 (334)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~i----------------  204 (334)
                      + ++ ..    .+..+...+..++|||||+ .||.+ .++.|++||+.+++..+.. .++...+                
T Consensus       101 ~-~~-~~----~l~~~~~~~~~~~~SPdG~-~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A          101 K-RQ-LI----TEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             T-TE-EC----CSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             C-Cc-EE----EcccCCCcceeeEECCCCC-EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            6 33 33    3566777899999999999 88877 5789999999887654422 2332222                


Q ss_pred             -EEEEEccCCcEEEeeecCCC-----------------------------------eEEEEEccC---CCc-cceeeccc
Q psy2305         205 -THLEFSSNGILLFSGARKDC-----------------------------------EIICWDLRN---PGC-ILHTFPRQ  244 (334)
Q Consensus       205 -~~~~~~~~~~~l~~~~~~d~-----------------------------------~i~iwd~~~---~~~-~~~~~~~~  244 (334)
                       ..+.|||||++|+..+..+.                                   .|++||+.+   ... ....+...
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence             34899999999988751111                                   477788765   311 12223211


Q ss_pred             ----ccCCceEEEEecCCCceEEeeec----CCcEEEEeCCCCCCCCCCCcccccccccee--cccccccc-----eeee
Q psy2305         245 ----VSTNQRVYFDLTSCSNYLLSGNT----NGDLSIWNVNTSNLPSSPYEESVQEPLYKF--SAHQDCTN-----GVRW  309 (334)
Q Consensus       245 ----~~~~~~~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~-----~~~~  309 (334)
                          .+...+..++|+|||+.++....    +..|.+||+.+++..      ........+  ..|...|.     .+.|
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~------~~~~~~~~l~~~~~~~~v~~~~~~~p~f  326 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR------WNCLVARQHIEMSTTGWVGRFRPSEPHF  326 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE------EEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc------cceeEEEEeeeccCCceEccCcCCCceE
Confidence                13456778999999997665533    347999999987300      000112222  34555554     7899


Q ss_pred             ccCCCcccceeeEE-eeec
Q psy2305         310 KHHKFERDLLVADA-TCSG  327 (334)
Q Consensus       310 ~~s~~~~~~~~~l~-t~~~  327 (334)
                        +|||    +.|+ ..+.
T Consensus       327 --spDG----~~l~~~~s~  339 (740)
T 4a5s_A          327 --TLDG----NSFYKIISN  339 (740)
T ss_dssp             --CTTS----SEEEEEEEC
T ss_pred             --cCCC----CEEEEEEEc
Confidence              9999    8776 5553

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.86  E-value=4e-19  Score=147.86  Aligned_cols=242  Identities=12%  Similarity=0.052  Sum_probs=173.1

Q ss_pred             eeEEEEEEecccceecCCCcEEEEeeCC------------------------CcEEEEeCCCCeeeEEEcCccccccccc
Q psy2305          59 GIIYDYVWYPKTSSIDGFTSYFLCSSMY------------------------APIHLWDSVGGEIKATYRPYNQVDEVTH  114 (334)
Q Consensus        59 ~~v~~~~~~~~~~~~s~~~~~l~~~~~d------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~  114 (334)
                      +.+.++++       +|+|+++++...+                        +.|.+||..+++....+.. ....   .
T Consensus        24 ~~v~~va~-------d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~---~   92 (329)
T 3fvz_A           24 GQVSGVAL-------DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-NLFY---L   92 (329)
T ss_dssp             SCEEEEEE-------CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-TTCS---S
T ss_pred             CCceEEEE-------CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-CccC---C
Confidence            44555555       8899988887766                        4799999988888766542 1111   6


Q ss_pred             eeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc-----cccccceEEEEEcC-CCCcEEEEee-cCCeEEEE
Q psy2305         115 AYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP-----WFRKNIVSAIAINP-VHPDICALGT-YSKIIGLF  186 (334)
Q Consensus       115 v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~~l~~~~-~dg~i~i~  186 (334)
                      +..++++|+|+++++.. ++.|++||.......+.......     ..+......++++| ++. ++++.+ .++.|++|
T Consensus        93 p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~  171 (329)
T 3fvz_A           93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQF  171 (329)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEE
T ss_pred             ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEE
Confidence            78999999999777776 89999999873111233210000     23445688999999 777 777775 68999999


Q ss_pred             ECCCCCceEeeccC----------CCCeEEEEEccC-CcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEe
Q psy2305         187 SDSDGRPLFFLKGH----------NGGITHLEFSSN-GILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDL  255 (334)
Q Consensus       187 d~~~~~~~~~~~~~----------~~~i~~~~~~~~-~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  255 (334)
                      | .+++.+..+...          -.....++++|+ +.++++.. .++.|++||..+ ++.+..+........+..+++
T Consensus       172 ~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~-~~~~I~~~~~~~-G~~~~~~~~~~~~~~~~~~~~  248 (329)
T 3fvz_A          172 S-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR-ENGRIQCFKTDT-KEFVREIKHASFGRNVFAISY  248 (329)
T ss_dssp             C-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET-TTTEEEEEETTT-CCEEEEECCTTTTTCEEEEEE
T ss_pred             c-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC-CCCEEEEEECCC-CcEEEEEeccccCCCcceeee
Confidence            9 567777766422          234789999998 66666665 799999999986 676777754444556778889


Q ss_pred             cC------CCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee---cccccccceeeeccCCCcccceeeEEeee
Q psy2305         256 TS------CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF---SAHQDCTNGVRWKHHKFERDLLVADATCS  326 (334)
Q Consensus       256 s~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~s~~~~~~~~~l~t~~  326 (334)
                      +|      +|+.+++...+..|++|++.++            +.+..+   .++...+.++++  +|+|    .++++..
T Consensus       249 ~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g------------~~~~~~~~~~~~~~~p~~ia~--~~dG----~lyvad~  310 (329)
T 3fvz_A          249 IPGFLFAVNGKPYFGDQEPVQGFVMNFSSG------------EIIDVFKPVRKHFDMPHDIVA--SEDG----TVYIGDA  310 (329)
T ss_dssp             ETTEEEEEECCCCTTCSCCCCEEEEETTTC------------CEEEEECCSSSCCSSEEEEEE--CTTS----EEEEEES
T ss_pred             cCCEEEEeCCCEEeccCCCcEEEEEEcCCC------------eEEEEEcCCCCccCCeeEEEE--CCCC----CEEEEEC
Confidence            99      3333333344568999999988            555555   355667899999  9999    9999998


Q ss_pred             cceeeee
Q psy2305         327 GQITNVK  333 (334)
Q Consensus       327 ~d~~i~~  333 (334)
                      .+++|.+
T Consensus       311 ~~~~I~~  317 (329)
T 3fvz_A          311 HTNTVWK  317 (329)
T ss_dssp             SSCCEEE
T ss_pred             CCCEEEE
Confidence            8888764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.86  E-value=1.4e-19  Score=164.84  Aligned_cols=280  Identities=8%  Similarity=0.014  Sum_probs=176.5

Q ss_pred             CceeEEEEcCCCcEEEEe--eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEE---------EEEEeccc
Q psy2305           2 DIEEDVDEAPDGTCLLTN--SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIY---------DYVWYPKT   70 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~--~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~~~~   70 (334)
                      ..|..++|++++-+++..  +.++...||....+....              .+..+ ...+.         ...|.   
T Consensus        24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------~l~~~-~~~~~~~~~~~~~~~~~~~---   85 (662)
T 3azo_A           24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE--------------SALPA-PWNVRNRVFEYSGFPWAGV---   85 (662)
T ss_dssp             SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE--------------ESSCT-TCCBCCCGGGTCCCCEEEE---
T ss_pred             CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc--------------eeCCC-CccccccccccCCccceee---
Confidence            357889999887677766  568899999864333221              12211 11222         22331   


Q ss_pred             ceecCCCcE-EEEeeC-CCcEEEEeCC--C-CeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C----------Cc
Q psy2305          71 SSIDGFTSY-FLCSSM-YAPIHLWDSV--G-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L----------SE  134 (334)
Q Consensus        71 ~~~s~~~~~-l~~~~~-d~~i~iwd~~--~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----------~~  134 (334)
                        .||||+. |+.++. +..|.++++.  . ++ ...+.......+...+..++|+|||+.|++++ +          ..
T Consensus        86 --~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~  162 (662)
T 3azo_A           86 --PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF  162 (662)
T ss_dssp             --CCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred             --eecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence              1489998 776653 5667777765  2 43 44444321000111678999999999999765 5          58


Q ss_pred             EEEEEcCCCC----Ceeeeeccccc-ccccceEEEEEcCCCCcEEEEeecC--------CeEEEEECC-CC---CceEee
Q psy2305         135 VKIFSTDRPG----RECVSRNLKPW-FRKNIVSAIAINPVHPDICALGTYS--------KIIGLFSDS-DG---RPLFFL  197 (334)
Q Consensus       135 i~i~d~~~~~----~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~  197 (334)
                      |.+||+....    ....    .+. .+...+..++|+|||+ .|+.++.+        ..|++||+. ++   +.....
T Consensus       163 i~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          163 LAAVPLDGSAAADRSAVR----ELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EEEEETTSTTTTCGGGSE----ESSCSCSSEECCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEEECCCCccccCCcee----EEEecCCCcccCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence            9999988410    3333    234 4556788899999999 88877654        379999998 56   344444


Q ss_pred             ccCCCCeEEEEEccCCcEEEeeecCCC--eEEEEEccCCCccceeecccccC------CceEEEEecCCCceEEeeecCC
Q psy2305         198 KGHNGGITHLEFSSNGILLFSGARKDC--EIICWDLRNPGCILHTFPRQVST------NQRVYFDLTSCSNYLLSGNTNG  269 (334)
Q Consensus       198 ~~~~~~i~~~~~~~~~~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~l~~~~~dg  269 (334)
                      .++...+..+.|+|||++++++. .++  .|.+||+.. ++.......+...      ..+..++|+|+++++++++. +
T Consensus       238 ~~~~~~~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~  314 (662)
T 3azo_A          238 GGPEEAIAQAEWAPDGSLIVATD-RTGWWNLHRVDPAT-GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G  314 (662)
T ss_dssp             EETTBCEEEEEECTTSCEEEEEC-TTSSCEEEEECTTT-CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred             CCCCceEcceEECCCCeEEEEEC-CCCCeEEEEEECCC-CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence            45578899999999999777777 688  555555544 3322222211111      00345788999999999988 9


Q ss_pred             cEEEE--eCCCCCCCCCCCccccccccceeccccccccee-eeccCCCcccceeeEEeeecce
Q psy2305         270 DLSIW--NVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGV-RWKHHKFERDLLVADATCSGQI  329 (334)
Q Consensus       270 ~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~s~~~~~~~~~l~t~~~d~  329 (334)
                      .++||  |+.++             .+..+..+...+..+ ++  +++.    -++++++.+.
T Consensus       315 ~~~l~~~d~~~~-------------~~~~l~~~~~~~~~~~s~--~~~~----~~~~~~~~~~  358 (662)
T 3azo_A          315 AAVLGILDPESG-------------ELVDAAGPWTEWAATLTV--SGTR----AVGVAASPRT  358 (662)
T ss_dssp             SCEEEEEETTTT-------------EEEECCSSCCEEEEEEEE--ETTE----EEEEEEETTE
T ss_pred             ccEEEEEECCCC-------------cEEEecCCCCeEEEEEec--CCCE----EEEEEcCCCC
Confidence            99999  55554             345666666677776 66  5544    4455555553

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.86  E-value=4.8e-19  Score=149.11  Aligned_cols=266  Identities=11%  Similarity=0.089  Sum_probs=178.3

Q ss_pred             EEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305           6 DVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~   75 (334)
                      .++|+|||++|+++.          .++.|.+||..+.+...              .+.......  ..--.|..++++|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~--------------~i~~~~~~~--~~g~~p~~i~~sp  117 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEK--------------EISLPPKRV--QGLNYDGLFRQTT  117 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEE--------------EEEECTTBC--CBCCCGGGEEECT
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEE--------------EEEcCcccc--ccCCCcceEEECC
Confidence            789999999999886          36789999998877652              222110000  0001356678899


Q ss_pred             CCcEEEEeeC--CCcEEEEeCCCCeeeEE-EcCccccccccceeEEEEcCCC-CEEEEee-CCcEEEEEcCCCCCeeeee
Q psy2305          76 FTSYFLCSSM--YAPIHLWDSVGGEIKAT-YRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        76 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~  150 (334)
                      +|++|+++..  ++.|.+||+.+++.+.. +...       ....+.+.|++ ..+++.+ ||.+.+|++...++.....
T Consensus       118 dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~  190 (361)
T 2oiz_A          118 DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQS  190 (361)
T ss_dssp             TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEE
T ss_pred             CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeec
Confidence            9999998864  57899999999988777 5431       23346678876 4455554 8999999987544433110


Q ss_pred             c--ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce--Eeecc------C----CCCeEEEEEccCCcEE
Q psy2305         151 N--LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL--FFLKG------H----NGGITHLEFSSNGILL  216 (334)
Q Consensus       151 ~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~------~----~~~i~~~~~~~~~~~l  216 (334)
                      .  ..+.....++ .+.+++++. .++..+.++.|.++|+......  ..+..      +    ......++|+|+++.+
T Consensus       191 ~~~~~~~~~~~~~-~~~~~~~g~-~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l  268 (361)
T 2oiz_A          191 RSKQMFSVKDDPI-FIAPALDKD-KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM  268 (361)
T ss_dssp             ECCCCSCTTTSCB-CSCCEECSS-EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE
T ss_pred             cccceEcCCCCce-EEEecccCC-EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE
Confidence            0  0111222222 333467777 6666778899999998655321  11110      0    0111237899999888


Q ss_pred             EeeecC-----------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCC
Q psy2305         217 FSGARK-----------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP  285 (334)
Q Consensus       217 ~~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  285 (334)
                      +++. .           .+.|.+||+.+ .+.+..+..+  .  ...++|+|+|++|++++. +.|.+||..++.+    
T Consensus       269 yv~~-~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~--~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l----  337 (361)
T 2oiz_A          269 YVFM-HPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGR--D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP----  337 (361)
T ss_dssp             EEEE-ESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECT--T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSC----
T ss_pred             EEEE-ccCCCcccccCCCceEEEEECCC-CcEEEEEecC--C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc----
Confidence            8765 3           35899999998 7777777654  2  778999999999998886 9999999998732    


Q ss_pred             CccccccccceecccccccceeeeccCCCc
Q psy2305         286 YEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                            +.+..+..+......+++  +|+|
T Consensus       338 ------~~~~~i~~~G~~P~~~~~--~p~G  359 (361)
T 2oiz_A          338 ------KLLRTIEGAAEASLQVQF--HPVG  359 (361)
T ss_dssp             ------EEEEEETTSCSSEEEEEE--CCCS
T ss_pred             ------eeeEEeccCCCCcEEEEe--cCCC
Confidence                  345555555667789999  9998

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.86  E-value=8e-19  Score=146.35  Aligned_cols=272  Identities=9%  Similarity=0.017  Sum_probs=181.6

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|.+++|+|++..++..+.++.++.|.   .+..              ..+.. +...+.+++|       +++++++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------~~~~~-~~~~~~~~~~-------~~~g~l~~~   61 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTIT---AEPW--------------LEISK-KGLQLEGLNF-------DRQGQLFLL   61 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEE--------------EEEES-SCCCEEEEEE-------CTTSCEEEE
T ss_pred             ccceeeecCCccceeEEeecccCcccc---ccee--------------EEEec-cCccccCcEE-------CCCCCEEEE
Confidence            477889999988887777888888882   2221              12222 2233455555       779998888


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C----CcEEEEEcCCCCCeeeeeccccccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L----SEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +..++.|.+||..+++..........     .+.+++++|+|+++++.. +    +.|.+||... +......  ....+
T Consensus        62 ~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~~~--~~~~~  133 (333)
T 2dg1_A           62 DVFEGNIFKINPETKEIKRPFVSHKA-----NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQDII--EDLST  133 (333)
T ss_dssp             ETTTCEEEEECTTTCCEEEEEECSSS-----SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEEEE--CSSSS
T ss_pred             ECCCCEEEEEeCCCCcEEEEeeCCCC-----CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEEEE--ccCcc
Confidence            88889999999988776554422222     789999999999887765 4    5899999875 3322110  11123


Q ss_pred             ccceEEEEEcCCCCcEEEEeec------CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305         158 KNIVSAIAINPVHPDICALGTY------SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL  231 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~  231 (334)
                      ...+.+++++|+|+ ++++...      .+.|..+|..+++... +..+...+..++|+|+|+.|+.+...++.|.+||+
T Consensus       134 ~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~  211 (333)
T 2dg1_A          134 AYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIAL  211 (333)
T ss_dssp             CCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             CCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence            45789999999998 6665543      3567777765554433 33334457899999999876655425789999999


Q ss_pred             cCCCccceeec-----ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc----
Q psy2305         232 RNPGCILHTFP-----RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD----  302 (334)
Q Consensus       232 ~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----  302 (334)
                      ...+.....+.     .......+..++++++|+++++...++.|.+||.. +            +.+..+..+..    
T Consensus       212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g------------~~~~~~~~~~~~~g~  278 (333)
T 2dg1_A          212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G------------YPIGQILIPGRDEGH  278 (333)
T ss_dssp             CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-S------------CEEEEEECTTGGGTC
T ss_pred             cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-C------------CEEEEEEcCCCcccc
Confidence            64333322211     00011356678999999988887778899999985 3            34444433322    


Q ss_pred             --ccceeeeccCCCcccceeeEEeeecc
Q psy2305         303 --CTNGVRWKHHKFERDLLVADATCSGQ  328 (334)
Q Consensus       303 --~i~~~~~~~s~~~~~~~~~l~t~~~d  328 (334)
                        .+.+++|  +|++    +.|+.++.+
T Consensus       279 ~~~~~~~~~--~~dg----~~L~v~~~~  300 (333)
T 2dg1_A          279 MLRSTHPQF--IPGT----NQLIICSND  300 (333)
T ss_dssp             SCBCCEEEE--CTTS----CEEEEEEEC
T ss_pred             ccCcceEEE--CCCC----CEEEEEeCc
Confidence              6899999  9998    777665554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=3e-18  Score=139.74  Aligned_cols=233  Identities=12%  Similarity=0.116  Sum_probs=166.7

Q ss_pred             cceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccc-cccccceeEEEE-cCCCCEEEEee--CCcEEEEEcCCCCC
Q psy2305          70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQ-VDEVTHAYSLAF-SLDGNKIYAGF--LSEVKIFSTDRPGR  145 (334)
Q Consensus        70 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~-~~~~~~l~~~~--d~~i~i~d~~~~~~  145 (334)
                      .++++++++++++...++.|.+||.. ++....+..... ......+..+++ .++++++++..  ++.|.+||..  ++
T Consensus        34 ~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~--g~  110 (286)
T 1q7f_A           34 GVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQ  110 (286)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SC
T ss_pred             eEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC--Cc
Confidence            34558899988888888999999976 666666643110 111126789999 57777777663  7899999944  55


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec--cCCCCeEEEEEccCCcEEEeeecCC
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK--GHNGGITHLEFSSNGILLFSGARKD  223 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d  223 (334)
                      .....   ...+...+.+++++|+|+ ++++...++.|.+||. +++.+..+.  .+...+..++++|+|+++++.. .+
T Consensus       111 ~~~~~---~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~  184 (286)
T 1q7f_A          111 FVRKF---GATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN-RA  184 (286)
T ss_dssp             EEEEE---CTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG-GG
T ss_pred             EEEEe---cCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEEC-CC
Confidence            54431   123445788999999998 8887778899999995 466665553  3445689999999999777766 68


Q ss_pred             CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC-cEEEEeCCCCCCCCCCCccccccccceeccccc
Q psy2305         224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG-DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD  302 (334)
Q Consensus       224 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (334)
                      +.|++||..  +..+..+........+..++++++|+++++...++ .|.+|+...             +.+..+..+..
T Consensus       185 ~~i~~~~~~--g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-------------~~~~~~~~~~~  249 (286)
T 1q7f_A          185 HCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-------------QLISALESKVK  249 (286)
T ss_dssp             TEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-------------CEEEEEEESSC
T ss_pred             CEEEEEcCC--CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-------------CEEEEEcccCC
Confidence            999999985  45555554332234577899999999888887775 999999654             34455544332


Q ss_pred             --ccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         303 --CTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       303 --~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                        .+.++++  +|++    +++++ +.|++|.+
T Consensus       250 ~~~~~~i~~--~~~g----~l~vs-~~~~~v~v  275 (286)
T 1q7f_A          250 HAQCFDVAL--MDDG----SVVLA-SKDYRLYI  275 (286)
T ss_dssp             CSCEEEEEE--ETTT----EEEEE-ETTTEEEE
T ss_pred             CCcceeEEE--CCCC----cEEEE-CCCCeEEE
Confidence              4678999  9999    87777 56887764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.83  E-value=2.7e-18  Score=156.37  Aligned_cols=238  Identities=11%  Similarity=0.018  Sum_probs=154.7

Q ss_pred             EEEEc--CCCcE-EEEeeC-CCeEEEEECC--C-CCceeeeeCCCCCCCCcceeeeee----eceeEEEEEEecccceec
Q psy2305           6 DVDEA--PDGTC-LLTNSN-DNHLRTFDLP--S-ELHCKSVWRPSNQRPKLNYTLKIK----EGGIIYDYVWYPKTSSID   74 (334)
Q Consensus         6 ~~~~s--p~~~~-l~~~~~-d~~v~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~s   74 (334)
                      ...|+  |||++ |+..+. +..|+++++.  + +...               .+...    +...+..++|       +
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~---------------~l~~~~~~~~~~~~~~~~~-------s  138 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR---------------PLTPVSAVGGGLRWADPVL-------L  138 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE---------------ECSCCCCSTTCEEEEEEEE-------E
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE---------------eccCCccCCCCccccCcEE-------C
Confidence            34455  99998 776653 5677777776  3 4332               22221    3345666666       7


Q ss_pred             CCCcEEEEeeCC----------CcEEEEeCCC------CeeeEEEc-CccccccccceeEEEEcCCCCEEEEee-C----
Q psy2305          75 GFTSYFLCSSMY----------APIHLWDSVG------GEIKATYR-PYNQVDEVTHAYSLAFSLDGNKIYAGF-L----  132 (334)
Q Consensus        75 ~~~~~l~~~~~d----------~~i~iwd~~~------~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----  132 (334)
                      |||+.|++++.+          ..|.+||+.+      ++. ..+. ....     .+..++|+|||++|+.++ +    
T Consensus       139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~-----~~~~~~~SpDG~~la~~~~~~~~~  212 (662)
T 3azo_A          139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHR-----FVTGPRLSPDGRQAVWLAWDHPRM  212 (662)
T ss_dssp             TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSS-----EECCCEECTTSSEEEEEEECTTCC
T ss_pred             CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCC-----cccCceECCCCCEEEEEECCCCCC
Confidence            799999988876          5899999987      544 3333 2222     678899999999998654 4    


Q ss_pred             ----CcEEEEEcCCCCC--eeeeecccccccccceEEEEEcCCCCcEEEEeecCC--eEEEEECCCCCceEeeccCCCC-
Q psy2305         133 ----SEVKIFSTDRPGR--ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK--IIGLFSDSDGRPLFFLKGHNGG-  203 (334)
Q Consensus       133 ----~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~-  203 (334)
                          ..|.+||+...+.  ....   ....+...+..+.|+|+|+ +++++..++  .|.+||+.+++.......+... 
T Consensus       213 ~~~~~~i~~~d~~~~g~~~~~~~---l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  288 (662)
T 3azo_A          213 PWEGTELKTARVTEDGRFADTRT---LLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFA  288 (662)
T ss_dssp             TTTCEEEEEEEECTTSCEEEEEE---EEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred             CCCCcEEEEEEECCCCcccccEE---eCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence                3799999983241  2222   2344567899999999999 888888888  6777777666654433332221 


Q ss_pred             -------eEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEE-EecCCCceEEeeecCC--cEEE
Q psy2305         204 -------ITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYF-DLTSCSNYLLSGNTNG--DLSI  273 (334)
Q Consensus       204 -------i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~l~~~~~dg--~i~i  273 (334)
                             +..++|+|++++++++. . +.++||.+...+..+..+..+  ...+..+ +++++.-++++++.+.  .|.+
T Consensus       289 ~p~w~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~  364 (662)
T 3azo_A          289 GPLWTPGMRWFAPLANGLIAVVHG-K-GAAVLGILDPESGELVDAAGP--WTEWAATLTVSGTRAVGVAASPRTAYEVVE  364 (662)
T ss_dssp             CCCCSTTCCSEEECTTSCEEEEEB-S-SSCEEEEEETTTTEEEECCSS--CCEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             CccccccCceEeEeCCCEEEEEEE-c-CccEEEEEECCCCcEEEecCC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence                   46789999999999998 7 999999655323345556544  3344444 4443333344445444  4566


Q ss_pred             EeCCCC
Q psy2305         274 WNVNTS  279 (334)
Q Consensus       274 wd~~~~  279 (334)
                      +|+.++
T Consensus       365 ~d~~~g  370 (662)
T 3azo_A          365 LDTVTG  370 (662)
T ss_dssp             EETTTC
T ss_pred             EECCCC
Confidence            676665

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.83  E-value=8.8e-18  Score=137.66  Aligned_cols=226  Identities=12%  Similarity=0.032  Sum_probs=159.3

Q ss_pred             eecCCCc-EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeee
Q psy2305          72 SIDGFTS-YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVS  149 (334)
Q Consensus        72 ~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~  149 (334)
                      +|+|+++ +++++..++.|..|+..++  ...+.....     .+.+++++|+|+++++.. ++.|.+||..+ ++....
T Consensus        34 ~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~-----~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~~~~  105 (296)
T 3e5z_A           34 VYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSH-----HQNGHCLNKQGHLIACSHGLRRLERQREPG-GEWESI  105 (296)
T ss_dssp             EEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCS-----SEEEEEECTTCCEEEEETTTTEEEEECSTT-CCEEEE
T ss_pred             eEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCC-----CcceeeECCCCcEEEEecCCCeEEEEcCCC-CcEEEE
Confidence            3477888 7788888899999999877  444543332     688999999999887776 68999999865 443221


Q ss_pred             ecccccccccceEEEEEcCCCCcEEEE----eec-------------CCeEEEEECCCCCceEeeccCCCCeEEEEEccC
Q psy2305         150 RNLKPWFRKNIVSAIAINPVHPDICAL----GTY-------------SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSN  212 (334)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  212 (334)
                      ...........+..++++|+|+ ++++    |+.             .+.|..++.. ++ ...+..+......++|+|+
T Consensus       106 ~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~d  182 (296)
T 3e5z_A          106 ADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPS  182 (296)
T ss_dssp             ECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTT
T ss_pred             eeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCC
Confidence            1000111123567899999998 7776    331             3467777755 43 4445556667889999999


Q ss_pred             CcEEEeeecCCCeEEEEEccCCCcc---ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccc
Q psy2305         213 GILLFSGARKDCEIICWDLRNPGCI---LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEES  289 (334)
Q Consensus       213 ~~~l~~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  289 (334)
                      |+.|++.+ .++.|++|++...+..   ...+  ......+..++++++|+++++.  ++.|.+|+.. +          
T Consensus       183 g~~lv~~~-~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g----------  246 (296)
T 3e5z_A          183 GNLLVSDT-GDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G----------  246 (296)
T ss_dssp             SCEEEEET-TTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S----------
T ss_pred             CCEEEEeC-CCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C----------
Confidence            99886666 7899999999732443   2233  1123344568899999877666  7889999987 4          


Q ss_pred             cccccceecccccccceeeeccC-CCcccceeeEEeeecceeeee
Q psy2305         290 VQEPLYKFSAHQDCTNGVRWKHH-KFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       290 ~~~~~~~~~~~~~~i~~~~~~~s-~~~~~~~~~l~t~~~d~~i~~  333 (334)
                        +.+..+..+.. +.+++|  . |++    +.|++++.++.+++
T Consensus       247 --~~~~~~~~~~~-~~~~~f--~~~d~----~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          247 --DELGRVLTPQT-TSNLCF--GGPEG----RTLYMTVSTEFWSI  282 (296)
T ss_dssp             --CEEEEEECSSC-CCEEEE--ESTTS----CEEEEEETTEEEEE
T ss_pred             --CEEEEEECCCC-ceeEEE--ECCCC----CEEEEEcCCeEEEE
Confidence              56666766666 899999  6 788    88888888887764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=6.3e-18  Score=142.26  Aligned_cols=269  Identities=7%  Similarity=0.010  Sum_probs=177.7

Q ss_pred             CCCcEEEEee------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee
Q psy2305          11 PDGTCLLTNS------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS   84 (334)
Q Consensus        11 p~~~~l~~~~------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~   84 (334)
                      ++++++++..      .|+.|.+||..+++..              ..+..+         ..| .++++||+++++++.
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~--------------~~i~~g---------~~p-~i~~spdg~~lyv~~   68 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFL--------------GMVPTA---------FNG-HVQVSNDGKKIYTMT   68 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEE--------------EEEECC---------EEE-EEEECTTSSEEEEEE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEE--------------EEecCC---------CCC-ceEECCCCCEEEEEE
Confidence            3677776653      4789999999888765              233221         123 356689999998876


Q ss_pred             ----------CCCcEEEEeCCCCeeeEEEcCccc-cccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeeeee
Q psy2305          85 ----------MYAPIHLWDSVGGEIKATYRPYNQ-VDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        85 ----------~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~  150 (334)
                                .++.|.+||..+++.+..+..... .........++++|||++|+++.   ++.|.+||+.+ ++.+.. 
T Consensus        69 ~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~-~~~~~~-  146 (361)
T 2oiz_A           69 TYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK-GDYVED-  146 (361)
T ss_dssp             EEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT-TEEEEE-
T ss_pred             ecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC-CcEEEE-
Confidence                      356799999999888877764211 00011467899999999999764   47899999996 444432 


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCceE------eeccCCCCeEEEEEccCCcEEEeeecCC
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRPLF------FLKGHNGGITHLEFSSNGILLFSGARKD  223 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~~d  223 (334)
                        .+. .. ....+.+.|++...+++.+.||.+.+|+... ++...      .+..+..++ .+.++|++..++..+ .+
T Consensus       147 --~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~~  220 (361)
T 2oiz_A          147 --VTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS-YY  220 (361)
T ss_dssp             --EGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB-TT
T ss_pred             --Eec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe-CC
Confidence              011 11 1233567887744788888999999999865 44431      222222222 344567888888788 79


Q ss_pred             CeEEEEEccCCCccc-eeecc------cc--cCCceEEEEecCCCceEEeeec-----------CCcEEEEeCCCCCCCC
Q psy2305         224 CEIICWDLRNPGCIL-HTFPR------QV--STNQRVYFDLTSCSNYLLSGNT-----------NGDLSIWNVNTSNLPS  283 (334)
Q Consensus       224 ~~i~iwd~~~~~~~~-~~~~~------~~--~~~~~~~~~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~  283 (334)
                      +.+.++|+......+ ..+..      ..  .......++|+|+++.++++..           .+.|.+||+.++    
T Consensus       221 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~----  296 (361)
T 2oiz_A          221 GNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK----  296 (361)
T ss_dssp             SEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT----
T ss_pred             CeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC----
Confidence            999999997522111 11110      00  0011112678999888776543           348999999998    


Q ss_pred             CCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         284 SPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                              +.+..+..+.  +.+++|  +||+    ++|++++. +.|.
T Consensus       297 --------~~v~~i~~~~--p~~ia~--spdg----~~l~v~n~-~~v~  328 (361)
T 2oiz_A          297 --------QRVARIPGRD--ALSMTI--DQQR----NLMLTLDG-GNVN  328 (361)
T ss_dssp             --------EEEEEEECTT--CCEEEE--ETTT----TEEEEECS-SCEE
T ss_pred             --------cEEEEEecCC--eeEEEE--CCCC----CEEEEeCC-CeEE
Confidence                    7778887766  899999  9999    98888876 6654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.82  E-value=2.1e-18  Score=146.86  Aligned_cols=224  Identities=8%  Similarity=-0.099  Sum_probs=148.6

Q ss_pred             ceecCCCcEEEEeeC-CC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCe
Q psy2305          71 SSIDGFTSYFLCSSM-YA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRE  146 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~  146 (334)
                      .+|+|||++|+.++. ++  .|.+||+.+++.......+..     .+..+.|+|||+.|+.+. ++.+.+||+.+ ++.
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~-----~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-g~~  114 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGD-----NTFGGFLSPDDDALFYVKDGRNLMRVDLAT-LEE  114 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCB-----CSSSCEECTTSSEEEEEETTTEEEEEETTT-CCE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCC-----CccceEEcCCCCEEEEEeCCCeEEEEECCC-Ccc
Confidence            457999999998887 66  488889988887665544332     344678999999999887 78999999997 443


Q ss_pred             eeeecccccccccceEEE--EEcCCCCcEEEEe----------------------ecCCeEEEEECCCCCceEeeccCCC
Q psy2305         147 CVSRNLKPWFRKNIVSAI--AINPVHPDICALG----------------------TYSKIIGLFSDSDGRPLFFLKGHNG  202 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~~~~~~~~  202 (334)
                      ..    ....+...+...  .++|++. +++..                      ..+..|++||+.+++.. .+..+..
T Consensus       115 ~~----~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~  188 (388)
T 3pe7_A          115 NV----VYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQ  188 (388)
T ss_dssp             EE----EEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESS
T ss_pred             ee----eeechhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCc
Confidence            32    223333434333  3489998 66632                      23468999999988654 4445677


Q ss_pred             CeEEEEEcc-CCcEEEeeecCC------CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeec-CC----c
Q psy2305         203 GITHLEFSS-NGILLFSGARKD------CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT-NG----D  270 (334)
Q Consensus       203 ~i~~~~~~~-~~~~l~~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg----~  270 (334)
                      .+..++|+| +|+.|+... .+      ..|.++|...  .....+..+.....+..+.|+|||+.|+..+. ++    .
T Consensus       189 ~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  265 (388)
T 3pe7_A          189 WLGHPIYRPYDDSTVAFCH-EGPHDLVDARMWLINEDG--TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRF  265 (388)
T ss_dssp             CEEEEEEETTEEEEEEEEE-CSCTTTSSCSEEEEETTS--CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEE
T ss_pred             cccccEECCCCCCEEEEEE-ecCCCCCcceEEEEeCCC--CceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcce
Confidence            889999999 999998877 43      2677777664  33344443322235667889999998866443 22    3


Q ss_pred             EEEEeCCCCCCCCCCCccccccccceeccccc---ccceeeeccCCCcccceeeEEee
Q psy2305         271 LSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD---CTNGVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       271 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~s~~~~~~~~~l~t~  325 (334)
                      |++||+.+++.          +.+..+.++..   ....+.|  +|||    +.|+..
T Consensus       266 l~~~d~~~g~~----------~~l~~~~~~~~~~~~~~~~~~--spdg----~~l~~~  307 (388)
T 3pe7_A          266 IYSADPETLEN----------RQLTSMPACSHLMSNYDGSLM--VGDG----SDAPVD  307 (388)
T ss_dssp             EEEECTTTCCE----------EEEEEECCEEEEEECTTSSEE--EEEE----CCC---
T ss_pred             EEEEecCCCce----------EEEEcCCCceeeeecCCCCeE--ccCC----CcceeE
Confidence            99999998732          23333333111   1344589  9999    877754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.82  E-value=2.1e-17  Score=138.45  Aligned_cols=240  Identities=10%  Similarity=-0.034  Sum_probs=158.5

Q ss_pred             CceeEEEEcCCCcEEEEee---------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccce
Q psy2305           2 DIEEDVDEAPDGTCLLTNS---------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSS   72 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~---------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   72 (334)
                      ..+..+++  ||++++...         .++.|.+|++.+++..               .+     ..+..+.|      
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---------------~l-----~~~~~~~~------   66 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR---------------FI-----ENATMPRI------   66 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---------------EE-----ESCEEEEE------
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE---------------Ec-----ccCCCeEE------
Confidence            34677788  898887642         2568999999887653               22     33555555      


Q ss_pred             ecCCCcEEEEeeCC---C--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C--------------
Q psy2305          73 IDGFTSYFLCSSMY---A--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L--------------  132 (334)
Q Consensus        73 ~s~~~~~l~~~~~d---~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d--------------  132 (334)
                       ||||+.|+..+.+   +  .|.+|++.+++.......  .     .+..++|+|||+.|+.+. +              
T Consensus        67 -SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~-----~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           67 -SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--K-----NIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             -CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--S-----EEEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             -CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--C-----CccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence             8899999887653   2  488889988876554432  1     278999999999888664 3              


Q ss_pred             -------------CcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC------C-eEEEEECCCCC
Q psy2305         133 -------------SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS------K-IIGLFSDSDGR  192 (334)
Q Consensus       133 -------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g-~i~i~d~~~~~  192 (334)
                                   ..|.+||+.+ +.....    +.. . .+..+.|+|+|  +++++..+      . ...+|.+.+++
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~-~~~~~~----l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~  209 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTES-EEVIEE----FEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK  209 (347)
T ss_dssp             CC---------CEEEEEEEETTT-TEEEEE----EEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE
T ss_pred             eeecCcccccCccceEEEEECCC-CeEEee----ecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc
Confidence                         4688899875 433132    222 3 78899999999  56655443      2 33444433444


Q ss_pred             ceEeeccCCCCeEEEEEccCCcEEEeeecCC--------CeEEEEEccCCCccceeecccccCCceEE-EEecCCCceEE
Q psy2305         193 PLFFLKGHNGGITHLEFSSNGILLFSGARKD--------CEIICWDLRNPGCILHTFPRQVSTNQRVY-FDLTSCSNYLL  263 (334)
Q Consensus       193 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~l~  263 (334)
                       ...+..+ ..+..+  +|+|++|+.++ .+        ..|.+||  . ++.......+  ...+.. +.|+ ++ +++
T Consensus       210 -~~~l~~~-~~~~~~--spdg~~l~~~~-~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~--~~~~~~~~~~s-dg-~~~  277 (347)
T 2gop_A          210 -EEKMFEK-VSFYAV--DSDGERILLYG-KPEKKYMSEHNKLYIYD--G-KEVMGILDEV--DRGVGQAKIKD-GK-VYF  277 (347)
T ss_dssp             -EEEEEEE-ESEEEE--EECSSCEEEEE-CCSSSCCCSSCEEEEEC--S-SCEEESSTTC--CSEEEEEEEET-TE-EEE
T ss_pred             -eEEeccC-cceeeE--CCCCCEEEEEE-ccccCCccccceEEEEC--C-CceEeccccC--CcccCCccEEc-Cc-EEE
Confidence             4444444 555554  99999888776 44        3677777  3 4433222222  345554 7899 88 888


Q ss_pred             eeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         264 SGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       264 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      +++.++.++|| +.++            +. ..+..+.+.|.+++|  +| .
T Consensus       278 ~~~~~~~~~l~-~~~g------------~~-~~~~~~~~~v~~~~~--s~-~  312 (347)
T 2gop_A          278 TLFEEGSVNLY-IWDG------------EI-KPIAKGRHWIMGFDV--DE-I  312 (347)
T ss_dssp             EEEETTEEEEE-EESS------------SE-EEEECSSSEEEEEEE--SS-S
T ss_pred             EEecCCcEEEE-EcCC------------ce-EEEecCCCeEEeeee--eC-c
Confidence            99999999999 8744            33 334445678899999  88 7

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.81  E-value=5.6e-17  Score=148.77  Aligned_cols=231  Identities=10%  Similarity=0.055  Sum_probs=157.6

Q ss_pred             eEEEEEEecccceecCCCcEEEEeeCCC-----cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC
Q psy2305          60 IIYDYVWYPKTSSIDGFTSYFLCSSMYA-----PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS  133 (334)
Q Consensus        60 ~v~~~~~~~~~~~~s~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~  133 (334)
                      .+..++|       ||||++|+.+..++     .|++||+.+++....... ..     .+..++|+|||+.|+.+. ++
T Consensus       126 ~~~~~~~-------SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~-----~~~~~~wspDg~~l~~~~~~~  192 (710)
T 2xdw_A          126 ALRGYAF-------SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RV-----KFSCMAWTHDGKGMFYNAYPQ  192 (710)
T ss_dssp             EEEEEEE-------CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EE-----CSCCEEECTTSSEEEEEECCC
T ss_pred             EEEEEEE-------CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-Cc-----ccceEEEEeCCCEEEEEEECC
Confidence            4555555       88999998775433     899999999987653221 11     356899999999998765 54


Q ss_pred             c----------------EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeec-----CCeEEEEECCC--
Q psy2305         134 E----------------VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY-----SKIIGLFSDSD--  190 (334)
Q Consensus       134 ~----------------i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~--  190 (334)
                      .                |++|++.+........ .....+...+..+.|+|+|+ +|+..+.     +..|++||+.+  
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v-~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~  270 (710)
T 2xdw_A          193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC-AEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQES  270 (710)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE-ECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred             ccccccccccccCCCCEEEEEECCCCcccceEE-eccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccc
Confidence            4                9999998632111110 01233455678999999999 7776654     56899999976  


Q ss_pred             ----CC-ceEeeccCCCCeEEEEEccCCcEEEeeecC---CCeEEEEEccCCCc-cceeecccccCCceEEEEecCCCce
Q psy2305         191 ----GR-PLFFLKGHNGGITHLEFSSNGILLFSGARK---DCEIICWDLRNPGC-ILHTFPRQVSTNQRVYFDLTSCSNY  261 (334)
Q Consensus       191 ----~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~  261 (334)
                          +. ....+..+...+.. .|+|+|+.|+..+..   ...|.+||+..... ....+..+.....+..+.|++++.+
T Consensus       271 ~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  349 (710)
T 2xdw_A          271 NGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL  349 (710)
T ss_dssp             SSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred             cccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEE
Confidence                43 45666666666655 488999988776622   23699999986321 2344444433335667888888888


Q ss_pred             EEeeecCCc--EEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEe
Q psy2305         262 LLSGNTNGD--LSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADAT  324 (334)
Q Consensus       262 l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t  324 (334)
                      +++...++.  |.+|++.++            +.+..+..+.+.+..+.+  +|++    ..|+.
T Consensus       350 v~~~~~~g~~~l~~~~~~~g------------~~~~~l~~~~~~v~~~~~--s~d~----~~l~~  396 (710)
T 2xdw_A          350 VLCYLHDVKNTLQLHDLATG------------ALLKIFPLEVGSVVGYSG--QKKD----TEIFY  396 (710)
T ss_dssp             EEEEEETTEEEEEEEETTTC------------CEEEEECCCSSEEEEEEC--CTTC----SEEEE
T ss_pred             EEEEEECCEEEEEEEECCCC------------CEEEecCCCCceEEEEec--CCCC----CEEEE
Confidence            888888884  566777666            445566666778889999  9988    65553

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.81  E-value=3.9e-16  Score=130.03  Aligned_cols=239  Identities=13%  Similarity=0.065  Sum_probs=158.9

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .+.+++|+|+|++++++..++.|.+||..+++..               .+...+...+.++++       +++++++++
T Consensus        46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~---------------~~~~~~~~~~~~i~~-------~~dg~l~v~  103 (333)
T 2dg1_A           46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------RPFVSHKANPAAIKI-------HKDGRLFVC  103 (333)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------EEEECSSSSEEEEEE-------CTTSCEEEE
T ss_pred             cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE---------------EEeeCCCCCcceEEE-------CCCCcEEEE
Confidence            4678999999998788888999999999887754               122123355666666       779988877


Q ss_pred             eeCC----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeC-------CcEEEEEcCCCCCeeeeec
Q psy2305          83 SSMY----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-------SEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        83 ~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-------~~i~i~d~~~~~~~~~~~~  151 (334)
                      ...+    +.|.+||..++.....+......   ..+..++++|+|+++++...       +.|..++..  +.....  
T Consensus       104 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~--~~~~~~--  176 (333)
T 2dg1_A          104 YLGDFKSTGGIFAATENGDNLQDIIEDLSTA---YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVTP--  176 (333)
T ss_dssp             ECTTSSSCCEEEEECTTSCSCEEEECSSSSC---CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SCCEEE--
T ss_pred             eCCCCCCCceEEEEeCCCCEEEEEEccCccC---CcccceEECCCCCEEEEeccccccCCCceEEEEeCC--CCEEEE--
Confidence            7665    68999998877655344321111   26889999999988776542       345445544  323321  


Q ss_pred             ccccccccceEEEEEcCCCCcEEE-EeecCCeEEEEECCC-CCceEe--------eccCCCCeEEEEEccCCcEEEeeec
Q psy2305         152 LKPWFRKNIVSAIAINPVHPDICA-LGTYSKIIGLFSDSD-GRPLFF--------LKGHNGGITHLEFSSNGILLFSGAR  221 (334)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~  221 (334)
                        +......+..++|+|+++ .++ +...++.|.+||+++ ++....        +.++ ..+..++++++|+++++.. 
T Consensus       177 --~~~~~~~~~~i~~~~dg~-~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~-  251 (333)
T 2dg1_A          177 --IIQNISVANGIALSTDEK-VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY-  251 (333)
T ss_dssp             --EEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE-
T ss_pred             --eecCCCcccceEECCCCC-EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc-
Confidence              222334578999999998 554 445678999999864 333321        1222 4678899999999877777 


Q ss_pred             CCCeEEEEEccCCCccceeeccccc----CCceEEEEecCCCceEEeeecCC------cEEEEeCC
Q psy2305         222 KDCEIICWDLRNPGCILHTFPRQVS----TNQRVYFDLTSCSNYLLSGNTNG------DLSIWNVN  277 (334)
Q Consensus       222 ~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~l~~~~~dg------~i~iwd~~  277 (334)
                      .++.|.+||..  ++.+..+.....    ...+.+++|+|+++.|+.++.++      .|..+++.
T Consensus       252 ~~~~v~~~d~~--g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          252 GQGRVLVFNKR--GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             TTTEEEEECTT--SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             CCCEEEEECCC--CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence            68999999984  555555543211    11467788999987776655543      45544544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.81  E-value=1.2e-15  Score=124.77  Aligned_cols=274  Identities=11%  Similarity=0.067  Sum_probs=183.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      ..+.+++++++|+++++...++.|.+|+.. ++..               .+. ......+.++++       +++++++
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~---------------~~~~~~~~~~~~~i~~-------~~~g~l~   71 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKIT---------------EYPLPTPDAKVMCLTI-------SSDGEVW   71 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE---------------EEECSSTTCCEEEEEE-------CTTSCEE
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE---------------EecCCcccCceeeEEE-------CCCCCEE
Confidence            358899999999977776667899999988 5443               111 111234545444       7799888


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++...++.|..||.. ++. ..+......   ..+..+++.++++++++.. ++.|..||..  +.....   .......
T Consensus        72 v~~~~~~~i~~~~~~-g~~-~~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~---~~~~~~~  141 (299)
T 2z2n_A           72 FTENAANKIGRITKK-GII-KEYTLPNPD---SAPYGITEGPNGDIWFTEMNGNRIGRITDD--GKIREY---ELPNKGS  141 (299)
T ss_dssp             EEETTTTEEEEECTT-SCE-EEEECSSTT---CCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEE---ECSSTTC
T ss_pred             EeCCCCCeEEEECCC-CcE-EEEeCCCcC---CCceeeEECCCCCEEEEecCCceEEEECCC--CCEEEe---cCCCCCC
Confidence            877768889999976 443 223221111   1678999999998877765 7899999983  443321   2233445


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe-eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF-LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      .+.++++.+++. ++++...++.|..||. +++.... +......+.+++++++|+++++.. .++.|.+||. + +.. 
T Consensus       142 ~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~-g~~-  215 (299)
T 2z2n_A          142 YPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI-IGNKIGRITT-S-GEI-  215 (299)
T ss_dssp             CEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-T-CCE-
T ss_pred             CCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-CCceEEEECC-C-CcE-
Confidence            789999999998 7776666789999998 6655432 333455688999999998766665 6889999998 4 442 


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL  318 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~  318 (334)
                      ..+........+..++++++|+++++...++.|..||.. +.           .....+..+...+.++++   +++   
T Consensus       216 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-----------~~~~~~~~~~~~~~~i~~---~~g---  277 (299)
T 2z2n_A          216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-----------IEEYPIQIKSAEPHGICF---DGE---  277 (299)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-----------EEEEECSSSSCCEEEEEE---CSS---
T ss_pred             EEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-----------eEEEeCCCCCCccceEEe---cCC---
Confidence            223222223567789999999877766567899999983 31           111112333456777777   567   


Q ss_pred             eeeEEeeecceeeee
Q psy2305         319 LVADATCSGQITNVK  333 (334)
Q Consensus       319 ~~~l~t~~~d~~i~~  333 (334)
                       .++++.+.++.+++
T Consensus       278 -~l~v~~~~~~l~~~  291 (299)
T 2z2n_A          278 -TIWFAMECDKIGKL  291 (299)
T ss_dssp             -CEEEEETTTEEEEE
T ss_pred             -CEEEEecCCcEEEE
Confidence             66666556666543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.81  E-value=4.6e-17  Score=149.35  Aligned_cols=242  Identities=9%  Similarity=0.011  Sum_probs=163.2

Q ss_pred             ceeEEEEcCCCcEEEEeeCCC-----eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDN-----HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      .+..++|||||++||.+..++     .|++||+.+++..              .. ...+ ..+..++|       +|||
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~--------------~~-~~~~-~~~~~~~w-------spDg  182 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL--------------PD-VLER-VKFSCMAW-------THDG  182 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE--------------EE-EEEE-ECSCCEEE-------CTTS
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC--------------cc-cccC-cccceEEE-------EeCC
Confidence            367899999999998776433     8999999998764              11 1111 12334444       8899


Q ss_pred             cEEEEeeCCCc----------------EEEEeCCCCee--eEEEcCccccccccceeEEEEcCCCCEEEEee------CC
Q psy2305          78 SYFLCSSMYAP----------------IHLWDSVGGEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF------LS  133 (334)
Q Consensus        78 ~~l~~~~~d~~----------------i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------d~  133 (334)
                      +.|+.++.++.                |++|++.+++.  ...+....+..   .+..+.|+|||++|+.+.      +.
T Consensus       183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~---~~~~~~~SpDg~~l~~~~~~~~~~~~  259 (710)
T 2xdw_A          183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK---WMGGAELSDDGRYVLLSIREGCDPVN  259 (710)
T ss_dssp             SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT---CEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred             CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCe---EEEEEEEcCCCCEEEEEEEccCCCcc
Confidence            99999887765                99999987763  22333322211   567899999999988543      45


Q ss_pred             cEEEEEcCC------CCCeeeeecccccccccceEEEEEcCCCCcEEEEeec----CCeEEEEECCCCC--ceEeeccCC
Q psy2305         134 EVKIFSTDR------PGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY----SKIIGLFSDSDGR--PLFFLKGHN  201 (334)
Q Consensus       134 ~i~i~d~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~--~~~~~~~~~  201 (334)
                      .|.+||+..      +.....    .+..+...+.. .|+|+|+ .|+..+.    .+.|.+||+.++.  ....+..|.
T Consensus       260 ~l~~~d~~~~~~~~~~~~~~~----~l~~~~~~~~~-~~s~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  333 (710)
T 2xdw_A          260 RLWYCDLQQESNGITGILKWV----KLIDNFEGEYD-YVTNEGT-VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH  333 (710)
T ss_dssp             EEEEEEGGGSSSSSCSSCCCE----EEECSSSSCEE-EEEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred             EEEEEECcccccccCCccceE----EeeCCCCcEEE-EEeccCC-EEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence            799999874      211222    23444444544 4889998 6655443    3469999998775  234555454


Q ss_pred             C--CeEEEEEccCCcEEEeeecCCCe--EEEEEccCCCccceeecccccCCceEEEEecCCCceEEee----ecCCcEEE
Q psy2305         202 G--GITHLEFSSNGILLFSGARKDCE--IICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSG----NTNGDLSI  273 (334)
Q Consensus       202 ~--~i~~~~~~~~~~~l~~~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~i  273 (334)
                      .  .+..++|++++.++++.. .++.  |++||+.+ ++.+..+..+  ...+..+.++|+++.++..    ...+.|++
T Consensus       334 ~~~~~~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~-g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~  409 (710)
T 2xdw_A          334 EKDVLEWVACVRSNFLVLCYL-HDVKNTLQLHDLAT-GALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH  409 (710)
T ss_dssp             SSCEEEEEEEETTTEEEEEEE-ETTEEEEEEEETTT-CCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred             CCCeEEEEEEEcCCEEEEEEE-ECCEEEEEEEECCC-CCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEE
Confidence            3  688899998887888887 7875  55566644 5555666554  5567778899998766533    23578999


Q ss_pred             EeCCCCC
Q psy2305         274 WNVNTSN  280 (334)
Q Consensus       274 wd~~~~~  280 (334)
                      ||+.+++
T Consensus       410 ~d~~tg~  416 (710)
T 2xdw_A          410 CDLTKEE  416 (710)
T ss_dssp             EETTSSS
T ss_pred             EECCCCc
Confidence            9998875

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=6.3e-17  Score=135.57  Aligned_cols=221  Identities=12%  Similarity=0.111  Sum_probs=149.2

Q ss_pred             ceeEEEEcCCCcEEEEeeCC---C--eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           3 IEEDVDEAPDGTCLLTNSND---N--HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d---~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      .+..++|||||++||..+.+   +  .|.+|++.+++..               .+.... . +..+.|       +|||
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~---------------~l~~~~-~-~~~~~w-------spdg  115 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK---------------KILEAK-N-IRSLEW-------NEDS  115 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE---------------EEEEES-E-EEEEEE-------CTTS
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE---------------EEEcCC-C-ccceeE-------CCCC
Confidence            46789999999999887643   3  4777888877643               222222 3 667666       7799


Q ss_pred             cEEEEeeCC---------------------------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305          78 SYFLCSSMY---------------------------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG  130 (334)
Q Consensus        78 ~~l~~~~~d---------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (334)
                      +.|+.++.+                           ..|.+||+.+++.+..+.. .      .+..++|+||| +++++
T Consensus       116 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~------~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          116 RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P------RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E------TTCEEEEETTE-EEEEE
T ss_pred             CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C------CcccccCCCCe-EEEEE
Confidence            988887632                           5689999988876444443 1      46789999999 77666


Q ss_pred             e-C------C-cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC--------CeEEEEECCCCCce
Q psy2305         131 F-L------S-EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS--------KIIGLFSDSDGRPL  194 (334)
Q Consensus       131 ~-d------~-~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~  194 (334)
                      . +      . ...+|.++ .+.. .    .+..+ ..+..+  +|+|+ .|+.++.+        ..|.+||  +++..
T Consensus       188 ~~~~~~~~~~~~~~l~~~d-~~~~-~----~l~~~-~~~~~~--spdg~-~l~~~~~~~~~~~~~~~~l~~~d--~~~~~  255 (347)
T 2gop_A          188 PHREIIPQYFKFWDIYIWE-DGKE-E----KMFEK-VSFYAV--DSDGE-RILLYGKPEKKYMSEHNKLYIYD--GKEVM  255 (347)
T ss_dssp             ECCCSSCCSSCCEEEEEEE-TTEE-E----EEEEE-ESEEEE--EECSS-CEEEEECCSSSCCCSSCEEEEEC--SSCEE
T ss_pred             ecccccccccccccEEEeC-CCce-E----EeccC-cceeeE--CCCCC-EEEEEEccccCCccccceEEEEC--CCceE
Confidence            4 3      2 45666655 2432 2    12333 445444  99999 67666533        4788888  55555


Q ss_pred             EeeccCCCCeEE-EEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcE-E
Q psy2305         195 FFLKGHNGGITH-LEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDL-S  272 (334)
Q Consensus       195 ~~~~~~~~~i~~-~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i-~  272 (334)
                      .....+...+.. +.|+ ++ ++++++ .++.+++| +.. ++.. .+..+  ...+..++|+|  .++++++.++.. .
T Consensus       256 ~l~~~~~~~~~~~~~~s-dg-~~~~~~-~~~~~~l~-~~~-g~~~-~~~~~--~~~v~~~~~s~--~~~~~~~~~~~~~~  325 (347)
T 2gop_A          256 GILDEVDRGVGQAKIKD-GK-VYFTLF-EEGSVNLY-IWD-GEIK-PIAKG--RHWIMGFDVDE--IVVYLKETATRLRE  325 (347)
T ss_dssp             ESSTTCCSEEEEEEEET-TE-EEEEEE-ETTEEEEE-EES-SSEE-EEECS--SSEEEEEEESS--SEEEEEECSSSCCE
T ss_pred             eccccCCcccCCccEEc-Cc-EEEEEe-cCCcEEEE-EcC-CceE-EEecC--CCeEEeeeeeC--cEEEEEcCCCChHH
Confidence            445566777886 9999 88 888888 79999999 884 5543 33322  45677899999  667776666654 6


Q ss_pred             EEeCC
Q psy2305         273 IWNVN  277 (334)
Q Consensus       273 iwd~~  277 (334)
                      +|.+.
T Consensus       326 l~~~~  330 (347)
T 2gop_A          326 LFTWD  330 (347)
T ss_dssp             EEEES
T ss_pred             heEeC
Confidence            66665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.80  E-value=9.6e-17  Score=129.55  Aligned_cols=239  Identities=9%  Similarity=0.042  Sum_probs=162.1

Q ss_pred             ceeEEEEcCCCcEEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ...+++++|+|++++ +...++.|.+|+..+....               .+......       .|..+++++++++++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~-------~p~~i~~~~~g~l~v   82 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------VLPFNGLY-------QPQGLAVDGAGTVYV   82 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------ECCCCSCC-------SCCCEEECTTCCEEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------eEeeCCcC-------CcceeEECCCCCEEE
Confidence            577899999998776 5467889999997655432               11111111       234566688988666


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +.. ++.|.+||...... ..+.... .   ..+..++++++|+++++.. ++.|.+|+... .....    ........
T Consensus        83 ~~~-~~~i~~~d~~~~~~-~~~~~~~-~---~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~----~~~~~~~~  151 (270)
T 1rwi_B           83 TDF-NNRVVTLAAGSNNQ-TVLPFDG-L---NYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQTV----LPFTGLND  151 (270)
T ss_dssp             EET-TTEEEEECTTCSCC-EECCCCS-C---SSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCEE----CCCCSCCS
T ss_pred             EcC-CCEEEEEeCCCceE-eeeecCC-c---CCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeEe----eccccCCC
Confidence            655 88999999865543 3332211 1   1678999999998777665 78999997653 22211    12223346


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      +.+++++++|+ ++++...++.|.+||............+...+.+++++++|..+++.. .++.|.+||... .. ...
T Consensus       152 p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~-~~-~~~  227 (270)
T 1rwi_B          152 PDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGS-TT-STV  227 (270)
T ss_dssp             CCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTC-SC-CEE
T ss_pred             ceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCC-Cc-cee
Confidence            78899999998 777777788999999876654443333446788999999997666666 688999999875 22 222


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ... .....+..++++++|+++++...++.|+++++...
T Consensus       228 ~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          228 LPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             ecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            221 11245778999999998888888999999998875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.79  E-value=9.6e-16  Score=135.49  Aligned_cols=272  Identities=11%  Similarity=0.052  Sum_probs=184.7

Q ss_pred             CCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEE
Q psy2305          11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIH   90 (334)
Q Consensus        11 p~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~   90 (334)
                      |.+.++++...++.|.++|..+++..              ..+..  +..+..+       .++|||+++++++.|+.|.
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~--------------~~i~~--g~~p~~v-------~~SpDGr~lyv~~~dg~V~  221 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIK--------------TVLDT--GYAVHIS-------RLSASGRYLFVIGRDGKVN  221 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEE--------------EEEEC--SSCEEEE-------EECTTSCEEEEEETTSEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEE--------------EEEeC--CCCccce-------EECCCCCEEEEEcCCCeEE
Confidence            34456677778899999999998875              23332  2233344       4588999999999999999


Q ss_pred             EEeCC--CCeeeEEEcCccccccccceeEEEEc----CCCCEEEEee--CCcEEEEEcCCCCCeeeeeccccc------c
Q psy2305          91 LWDSV--GGEIKATYRPYNQVDEVTHAYSLAFS----LDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPW------F  156 (334)
Q Consensus        91 iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~------~  156 (334)
                      +||+.  +++.+..+....      ....++|+    |||+++++++  ++++.++|..+ .+.+...++.-.      .
T Consensus       222 viD~~~~t~~~v~~i~~G~------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t-~~~~~~i~~~~~~~~~~~~  294 (567)
T 1qks_A          222 MIDLWMKEPTTVAEIKIGS------EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEY  294 (567)
T ss_dssp             EEETTSSSCCEEEEEECCS------EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCE
T ss_pred             EEECCCCCCcEeEEEecCC------CCceeEEccccCCCCCEEEEEEccCCeEEEEECCC-CcEEEEEeccccccccccc
Confidence            99995  777777776522      56799999    6999999775  79999999886 555554321100      1


Q ss_pred             ccc-ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         157 RKN-IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       157 ~~~-~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      |.. .+..+..++++..+++....+|.|.++|..+.+...  .+. .......+.|+|+|+++++++..++.|.++|+.+
T Consensus       295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t  373 (567)
T 1qks_A          295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  373 (567)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence            222 678899999887566666778999999987654322  222 3345678999999999888775689999999997


Q ss_pred             CCccceeecc-c--ccCCceEEEEecCCCceE-Eeee-cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceee
Q psy2305         234 PGCILHTFPR-Q--VSTNQRVYFDLTSCSNYL-LSGN-TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR  308 (334)
Q Consensus       234 ~~~~~~~~~~-~--~~~~~~~~~~~s~~~~~l-~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  308 (334)
                       ++....+.. .  .+......+ ++|++..+ +++. .++.|.++|..+.+..     +..++.++.+......-..+.
T Consensus       374 -~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~-----~~~~kvv~~i~~~g~g~~~i~  446 (567)
T 1qks_A          374 -GKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP-----DNAWKILDSFPALGGGSLFIK  446 (567)
T ss_dssp             -TEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT-----TTBTSEEEEEECSCSCCCCEE
T ss_pred             -CcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc-----cccCEEEEEEecCCCCCEEEE
Confidence             665554432 1  112222233 57875444 4443 4689999999874210     112356666665433335678


Q ss_pred             eccCCCcccceeeEEeee
Q psy2305         309 WKHHKFERDLLVADATCS  326 (334)
Q Consensus       309 ~~~s~~~~~~~~~l~t~~  326 (334)
                      .  +|++    ++|.+..
T Consensus       447 ~--~p~~----~~l~v~~  458 (567)
T 1qks_A          447 T--HPNS----QYLYVDA  458 (567)
T ss_dssp             C--CTTC----SEEEEEC
T ss_pred             e--CCCC----CeEEEec
Confidence            8  9999    8777654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.79  E-value=2e-16  Score=129.55  Aligned_cols=237  Identities=11%  Similarity=0.097  Sum_probs=161.1

Q ss_pred             ceeEEEEcCCCc-EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGT-CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ...+++|+|+|+ +++++..++.|.+|+..++ ..               .+.. +...+.++++       +++|++++
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~---------------~~~~-~~~~~~~l~~-------~~dg~l~v   84 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS---------------PEMH-PSHHQNGHCL-------NKQGHLIA   84 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE---------------EEES-SCSSEEEEEE-------CTTCCEEE
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE---------------EEEC-CCCCcceeeE-------CCCCcEEE
Confidence            467899999998 7778888999999999877 32               2222 2344555555       78999888


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEE----ee-C-----------CcEEEEEcCCCCC
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA----GF-L-----------SEVKIFSTDRPGR  145 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~-d-----------~~i~i~d~~~~~~  145 (334)
                      +...++.|.+||..+++.......... .....+..++++|+|+++++    |. +           +.-.+|.++..+.
T Consensus        85 ~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~  163 (296)
T 3e5z_A           85 CSHGLRRLERQREPGGEWESIADSFEG-KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT  163 (296)
T ss_dssp             EETTTTEEEEECSTTCCEEEEECEETT-EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC
T ss_pred             EecCCCeEEEEcCCCCcEEEEeeccCC-CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC
Confidence            777778999999988876544332111 11114678999999998886    32 0           1224555543233


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC-CCCc---eEeeccCCCCeEEEEEccCCcEEEeeec
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS-DGRP---LFFLKGHNGGITHLEFSSNGILLFSGAR  221 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~  221 (334)
                       ..    ....+......++|+|+++ .+++.+.++.|.+||+. +++.   ...+..+...+.+++++++|++++ +. 
T Consensus       164 -~~----~~~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~-  235 (296)
T 3e5z_A          164 -LS----APIRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA-SA-  235 (296)
T ss_dssp             -EE----EEECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE-EE-
T ss_pred             -EE----EeecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE-Ec-
Confidence             22    2334556678999999999 77777778999999986 4544   233333455667899999998554 43 


Q ss_pred             CCCeEEEEEccCCCccceeecccccCCceEEEEe-cCCCceEEeeecCCcEEEEeCCCC
Q psy2305         222 KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDL-TSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       222 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                       ++.|.+||..  ++.+..+..+  .. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus       236 -~~~v~~~~~~--g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~  287 (296)
T 3e5z_A          236 -GDGVHVLTPD--GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVR  287 (296)
T ss_dssp             -TTEEEEECTT--SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred             -CCeEEEECCC--CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence             6789999986  5556666544  22 667788 6899988888765 4555666664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.79  E-value=1e-16  Score=129.38  Aligned_cols=233  Identities=8%  Similarity=0.035  Sum_probs=156.1

Q ss_pred             cccceecCCCcEEE-EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCe
Q psy2305          68 PKTSSIDGFTSYFL-CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRE  146 (334)
Q Consensus        68 ~~~~~~s~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~  146 (334)
                      |..+++++++++++ +...++.|.+|+..++... .+.. ....   .+.+++++++|+++++..++.|.+||...  ..
T Consensus        26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~-~~~~---~p~~i~~~~~g~l~v~~~~~~i~~~d~~~--~~   98 (270)
T 1rwi_B           26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPF-NGLY---QPQGLAVDGAGTVYVTDFNNRVVTLAAGS--NN   98 (270)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECCC-CSCC---SCCCEEECTTCCEEEEETTTEEEEECTTC--SC
T ss_pred             ccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEee-CCcC---CcceeEECCCCCEEEEcCCCEEEEEeCCC--ce
Confidence            34455688998777 5467889999997654432 2211 1111   57899999999866555588999999874  33


Q ss_pred             eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305         147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEI  226 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i  226 (334)
                      ...   ........+.+++++++|. ++++...++.|.+|+..+.............+.+++++|+|+++++.. .++.|
T Consensus        99 ~~~---~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~i  173 (270)
T 1rwi_B           99 QTV---LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT-DNNRV  173 (270)
T ss_dssp             CEE---CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEG-GGTEE
T ss_pred             Eee---eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEEC-CCCEE
Confidence            322   1112235688999999998 777777789999998655544332223334677899999998666665 67899


Q ss_pred             EEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccce
Q psy2305         227 ICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG  306 (334)
Q Consensus       227 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  306 (334)
                      .+||... .........  ....+..++++++|.++++...++.|.+|+.....            .......+...+.+
T Consensus       174 ~~~~~~~-~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~------------~~~~~~~~~~~p~~  238 (270)
T 1rwi_B          174 VKLEAES-NNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT------------STVLPFTGLNTPLA  238 (270)
T ss_dssp             EEECTTT-CCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC------------CEECCCCSCSCEEE
T ss_pred             EEEecCC-CceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc------------ceeeccCCCCCcee
Confidence            9999875 322211111  12456788999999777777778899999987642            21111222346789


Q ss_pred             eeeccCCCcccceeeEEeeecceeeee
Q psy2305         307 VRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       307 ~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +++  +|++    +++++...+++|.+
T Consensus       239 i~~--~~~g----~l~v~~~~~~~v~~  259 (270)
T 1rwi_B          239 VAV--DSDR----TVYVADRGNDRVVK  259 (270)
T ss_dssp             EEE--CTTC----CEEEEEGGGTEEEE
T ss_pred             EEE--CCCC----CEEEEECCCCEEEE
Confidence            999  9999    98888888888764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.79  E-value=2.8e-15  Score=132.52  Aligned_cols=281  Identities=11%  Similarity=0.083  Sum_probs=181.4

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECC--CCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceec----CC
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLP--SELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSID----GF   76 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s----~~   76 (334)
                      .+..+.|+|||+++++++.|+.|.+||+.  +.+..              ..+..  +...       ..++|+    ||
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v--------------~~i~~--G~~P-------~~ia~s~~~~pD  254 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV--------------AEIKI--GSEA-------RSIETSKMEGWE  254 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE--------------EEEEC--CSEE-------EEEEECCSTTCT
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe--------------EEEec--CCCC-------ceeEEccccCCC
Confidence            35689999999999999999999999996  55543              22222  1222       335558    69


Q ss_pred             CcEEEEeeC-CCcEEEEeCCCCeeeEEEcCcccc-c----c-ccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCee
Q psy2305          77 TSYFLCSSM-YAPIHLWDSVGGEIKATYRPYNQV-D----E-VTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGREC  147 (334)
Q Consensus        77 ~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~-~----~-~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~  147 (334)
                      |+++++++. ++.|.++|..+.+.+..+...... +    + ...+..+..++++..++.. . .|.|.++|.... ...
T Consensus       255 Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~-~~~  333 (567)
T 1qks_A          255 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL-NNL  333 (567)
T ss_dssp             TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS-SEE
T ss_pred             CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC-ccc
Confidence            998887765 589999999999988877643210 0    0 1157789999988776655 3 799999998752 222


Q ss_pred             eeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc-----CCCCeEEEEEccCCcEE-Eeeec
Q psy2305         148 VSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG-----HNGGITHLEFSSNGILL-FSGAR  221 (334)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l-~~~~~  221 (334)
                      ..   ..........++.|+|++++++++...++.|.++|+.+++.+..+..     |.+.-..+ ++|++..+ ++...
T Consensus       334 ~v---~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~  409 (567)
T 1qks_A          334 KT---TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHM  409 (567)
T ss_dssp             EE---EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred             ee---eeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCC
Confidence            21   12223445778999999993344455689999999999987766543     33222222 57875544 44431


Q ss_pred             CCCeEEEEEccCCC------ccceeecccccCCceEEEEecCCCceEEeeec-------CCcEEEEeCCCCCCCCCCCcc
Q psy2305         222 KDCEIICWDLRNPG------CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT-------NGDLSIWNVNTSNLPSSPYEE  288 (334)
Q Consensus       222 ~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~  288 (334)
                      .++.|.++|....+      +.+.++...  ......+..+|++++|.+...       .++|.++|+.+.+.-    . 
T Consensus       410 g~~~Vsvid~~~~~~~~~~~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~----g-  482 (567)
T 1qks_A          410 GDDSVALIGTDPEGHPDNAWKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD----G-  482 (567)
T ss_dssp             SSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS----S-
T ss_pred             CCCeEEEecCCCCCCccccCEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccc----c-
Confidence            36899999998622      234444432  222233668999999887652       358999999875110    0 


Q ss_pred             cccccccee--------cccccccceeeeccCCCcccceeeEEee
Q psy2305         289 SVQEPLYKF--------SAHQDCTNGVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       289 ~~~~~~~~~--------~~~~~~i~~~~~~~s~~~~~~~~~l~t~  325 (334)
                       ..+....+        ......+..+.|  +|+|    +.+..+
T Consensus       483 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~G----~~~~~s  520 (567)
T 1qks_A          483 -SDPEFKTLPIAEWAGITEGQPRVVQGEF--NKDG----TEVWFS  520 (567)
T ss_dssp             -SCCCEEEECHHHHHTCCSSCCEEEEEEE--CTTS----SEEEEE
T ss_pred             -cCCCcEEeccccccccCCCCcceEeeeE--CCCC----CEEEEE
Confidence             00111122        112346889999  9999    765555

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.79  E-value=6.1e-17  Score=148.11  Aligned_cols=242  Identities=10%  Similarity=-0.044  Sum_probs=159.1

Q ss_pred             ceeEEEEcCCCcEEE-----EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           3 IEEDVDEAPDGTCLL-----TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~-----~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      .+.+++|||||++||     .|+.+..|++||+.+++...            ...+.   ......       ++|+|||
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~------------~~~~~---~~~~~~-------~~wspDg  179 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK------------VDVIE---GGKYAT-------PKWTPDS  179 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS------------SCCBS---CCTTCC-------CEECTTS
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC------------CcccC---cccccc-------eEEecCC
Confidence            478999999999998     45556799999999887530            00111   011123       4458899


Q ss_pred             cEEEEeeCCCc-------------EEEEeCCCCee--eEEEcCccccccccceeEEEEcCCCCEEEEee-CC----cEEE
Q psy2305          78 SYFLCSSMYAP-------------IHLWDSVGGEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS----EVKI  137 (334)
Q Consensus        78 ~~l~~~~~d~~-------------i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~----~i~i  137 (334)
                      +.|+.++.|..             |++|++.++..  ...+....+..   .+..+.|+|||++|+.+. ++    .|.+
T Consensus       180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~---~~~~~~~SpDG~~l~~~~~~~~~~~~l~~  256 (695)
T 2bkl_A          180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPT---TFLQSDLSRDGKYLFVYILRGWSENDVYW  256 (695)
T ss_dssp             SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTT---CEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred             CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCE---EEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence            99999988766             99999988762  23333322211   678999999999988654 44    5555


Q ss_pred             EEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee---cCCeEEEEECCCCCc--eEeeccC--CCCeEEEEEc
Q psy2305         138 FSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT---YSKIIGLFSDSDGRP--LFFLKGH--NGGITHLEFS  210 (334)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~--~~~i~~~~~~  210 (334)
                      ++..  +....    .+..+...+....+ ++|. +++...   .++.|.+||+.+++.  ...+..+  ...+..++|+
T Consensus       257 ~~~~--~~~~~----~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          257 KRPG--EKDFR----LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             ECTT--CSSCE----EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             EcCC--CCceE----EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence            5543  22233    23444455566666 6777 666554   358899999987753  2333333  4567888888


Q ss_pred             cCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEee----ecCCcEEEEeCCCCC
Q psy2305         211 SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSG----NTNGDLSIWNVNTSN  280 (334)
Q Consensus       211 ~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~  280 (334)
                       ++.++++.. .|+..++|.+...+.....+..+ ....+..++++|+++.++..    ...++|++||+.+++
T Consensus       329 -~~~lv~~~~-~dg~~~l~~~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          329 -GGHLSLEYL-KDATSEVRVATLKGKPVRTVQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             -TTEEEEEEE-ETTEEEEEEEETTCCEEEECCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             -CCEEEEEEE-ECCEEEEEEEeCCCCeeEEecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence             677778887 79998888776434444444322 13445567789999777633    335789999998864

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.78  E-value=8.2e-16  Score=124.20  Aligned_cols=220  Identities=11%  Similarity=-0.018  Sum_probs=160.3

Q ss_pred             CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEE
Q psy2305          12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHL   91 (334)
Q Consensus        12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~i   91 (334)
                      .+++|++++.++.|.+||.++++...              .+..+....+.++       .++|+|++++  +.++.|..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w--------------~~~~~~~~~~~~~-------~~~pdG~ilv--s~~~~V~~   60 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVW--------------EYPLEKGWECNSV-------AATKAGEILF--SYSKGAKM   60 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEE--------------EEECCTTCCCCEE-------EECTTSCEEE--ECBSEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEE--------------EeCCCccCCCcCe-------EECCCCCEEE--eCCCCEEE
Confidence            46789999999999999998988762              3332211233343       4478999888  34678999


Q ss_pred             EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccc--cccccceEEEEEc
Q psy2305          92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKP--WFRKNIVSAIAIN  167 (334)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~v~~~~~~  167 (334)
                      ||. +++.+..+.....    ..+.++.+.++|+.+++..  ++.+..+|..  ++.+....+..  ..+......+++.
T Consensus        61 ~d~-~G~~~W~~~~~~~----~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~~~~~~~~~~~v~~~  133 (276)
T 3no2_A           61 ITR-DGRELWNIAAPAG----CEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFETGIERPHAQFRQINKN  133 (276)
T ss_dssp             ECT-TSCEEEEEECCTT----CEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred             ECC-CCCEEEEEcCCCC----ccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccCCCCcccccccCceEC
Confidence            998 8999888876321    1678999999999999765  4556666653  76655432111  1222345567889


Q ss_pred             CCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccccc-
Q psy2305         168 PVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS-  246 (334)
Q Consensus       168 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-  246 (334)
                      ++|+ ++++...++.|..||.+ ++.+.++... ....++...++|+.++++. .++.|..+|..+ ++.+.++..... 
T Consensus       134 ~~G~-~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~t-G~~~w~~~~~~~~  208 (276)
T 3no2_A          134 KKGN-YLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG-DAHCFVQLNLES-NRIVRRVNANDIE  208 (276)
T ss_dssp             TTSC-EEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB-TTSEEEEECTTT-CCEEEEEEGGGSB
T ss_pred             CCCC-EEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC-CCCeEEEEeCcC-CcEEEEecCCCCC
Confidence            9999 99999999999999987 9998888754 3456778889999999888 788999999987 787777764321 


Q ss_pred             ---CCceEEEEecCCCceEEeee
Q psy2305         247 ---TNQRVYFDLTSCSNYLLSGN  266 (334)
Q Consensus       247 ---~~~~~~~~~s~~~~~l~~~~  266 (334)
                         ...+..+...++|.++++..
T Consensus       209 ~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          209 GVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             SCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CccccccccceEcCCCCEEEEec
Confidence               12356677889999888764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.77  E-value=6.4e-16  Score=128.37  Aligned_cols=266  Identities=10%  Similarity=-0.051  Sum_probs=169.9

Q ss_pred             CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeee
Q psy2305          21 NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIK  100 (334)
Q Consensus        21 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~  100 (334)
                      .++.|.+||..+++....+.....         ....+....++.+       . +++++++...++.|.+||..+++.+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n---------~~~lg~~~~~i~~-------~-~~~lyv~~~~~~~v~viD~~t~~~~   77 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRAN---------GFKLGDVAQSMVI-------R-DGIGWIVVNNSHVIFAIDINTFKEV   77 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHH---------SSCCBSCEEEEEE-------E-TTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhc---------CcccCccceEEEE-------E-CCEEEEEEcCCCEEEEEECcccEEE
Confidence            478999999998876521100000         0001122333333       2 4556666667889999999999998


Q ss_pred             EEEcCccccccccceeEEEEcCCCCEEEEe-eCCcEEEEEcCCCCCeeeeecccc-cccccceEEEEEcCCCCcEEEEee
Q psy2305         101 ATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPGRECVSRNLKP-WFRKNIVSAIAINPVHPDICALGT  178 (334)
Q Consensus       101 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~  178 (334)
                      ..+....      .+..++++++++.+++. .++.|.+||+.+ ++.....+... .+.......+++ .++. ++++..
T Consensus        78 ~~i~~~~------~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~g~~~~~~~~p~~i~~-~~~~-lyv~~~  148 (328)
T 3dsm_A           78 GRITGFT------SPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYIECPDMDMESGSTEQMVQ-YGKY-VYVNCW  148 (328)
T ss_dssp             EEEECCS------SEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEEECTTCCTTTCBCCCEEE-ETTE-EEEEEC
T ss_pred             EEcCCCC------CCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEEEcCCccccCCCcceEEE-ECCE-EEEEcC
Confidence            8885322      67899999998555555 389999999986 44433221100 001114556777 3443 444433


Q ss_pred             -cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC----------CeEEEEEccCCCccceeecccccC
Q psy2305         179 -YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD----------CEIICWDLRNPGCILHTFPRQVST  247 (334)
Q Consensus       179 -~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~  247 (334)
                       .++.|.++|+++++.+..+... .....++++|+|++++++. .+          +.|.++|..+ ++....+... ..
T Consensus       149 ~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~-~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~-~g  224 (328)
T 3dsm_A          149 SYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITD-GGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFK-LG  224 (328)
T ss_dssp             TTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBC-CBCTTCSSCBCCCEEEEEETTT-TEEEEEEECC-TT
T ss_pred             CCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEEC-CCccCCccccCCceEEEEECCC-CeEEEEEecC-CC
Confidence             4889999999999888777643 3456899999999777665 44          7899999987 5555454422 12


Q ss_pred             CceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEee--
Q psy2305         248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATC--  325 (334)
Q Consensus       248 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~--  325 (334)
                      .....++++|++++|+++..  .|.+||..+++..          ....+.........+++  +|++.   .++++.  
T Consensus       225 ~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~----------~~~~~~~~~~~p~gi~v--dp~~g---~lyva~~~  287 (328)
T 3dsm_A          225 DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP----------VRPFLEFRDTKYYGLTV--NPNNG---EVYVADAI  287 (328)
T ss_dssp             CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC----------SSCSBCCCSSCEEEEEE--CTTTC---CEEEEECT
T ss_pred             CCceeEEEecCCCEEEEEcc--EEEEEECCCCcee----------eeeeecCCCCceEEEEE--cCCCC---eEEEEccc
Confidence            35678999999998887754  8999999887421          11111212346788999  99441   556665  


Q ss_pred             --ecceeeee
Q psy2305         326 --SGQITNVK  333 (334)
Q Consensus       326 --~~d~~i~~  333 (334)
                        ..++.|.+
T Consensus       288 ~y~~~~~V~v  297 (328)
T 3dsm_A          288 DYQQQGIVYR  297 (328)
T ss_dssp             TSSSEEEEEE
T ss_pred             ccccCCEEEE
Confidence              56666653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.77  E-value=1.1e-15  Score=126.92  Aligned_cols=255  Identities=6%  Similarity=-0.027  Sum_probs=166.8

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      ...+++. +++.+++...++.|.+||..+++..              ..+.  .......       ++++++++++++.
T Consensus        46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~--------------~~i~--~~~~p~~-------i~~~~~g~lyv~~  101 (328)
T 3dsm_A           46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV--------------GRIT--GFTSPRY-------IHFLSDEKAYVTQ  101 (328)
T ss_dssp             EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE--------------EEEE--CCSSEEE-------EEEEETTEEEEEE
T ss_pred             ceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE--------------EEcC--CCCCCcE-------EEEeCCCeEEEEE
Confidence            4567774 3445555566799999999998875              2332  1233334       4446788655555


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      ..++.|.+||..+++....+...........+..+++ .+++.+++..  ++.|.++|+.+ ++....    ... ....
T Consensus       102 ~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t-~~~~~~----i~~-g~~p  174 (328)
T 3dsm_A          102 IWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET-DKVVDE----LTI-GIQP  174 (328)
T ss_dssp             BSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT-TEEEEE----EEC-SSCB
T ss_pred             CCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC-CeEEEE----EEc-CCCc
Confidence            4789999999999988877764331111113456777 4444444442  78999999986 444443    221 2345


Q ss_pred             EEEEEcCCCCcEEEEeecC----------CeEEEEECCCCCceEeeccC-CCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         162 SAIAINPVHPDICALGTYS----------KIIGLFSDSDGRPLFFLKGH-NGGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                      ..++++|+|+ +++++..+          +.|.++|..+++....+... ......++++|+++.|+++. .  .|.+||
T Consensus       175 ~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~--~v~~~d  250 (328)
T 3dsm_A          175 TSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N--DIWRMP  250 (328)
T ss_dssp             CCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-S--SEEEEE
T ss_pred             cceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-c--EEEEEE
Confidence            6889999998 77766554          78999999988877666532 23678999999999998876 4  899999


Q ss_pred             ccCCCccce-eecccccCCceEEEEecCC-CceEEee----ecCCcEEEEeCCCCCCCCCCCccccccccceeccccccc
Q psy2305         231 LRNPGCILH-TFPRQVSTNQRVYFDLTSC-SNYLLSG----NTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCT  304 (334)
Q Consensus       231 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~~-~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  304 (334)
                      ..+ ++... .+.. ........++++|+ +.++++.    ..++.|.+||.. +            +.+..+... ...
T Consensus       251 ~~t-~~~~~~~~~~-~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g------------~~~~~i~~G-~~P  314 (328)
T 3dsm_A          251 VEA-DRVPVRPFLE-FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G------------KLIDEFYVG-IIP  314 (328)
T ss_dssp             TTC-SSCCSSCSBC-CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C------------CEEEEEEEE-ESE
T ss_pred             CCC-Cceeeeeeec-CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C------------CEEEEEEec-cCc
Confidence            976 44321 1111 11345778999994 5555555    567899999998 6            556655432 233


Q ss_pred             ceeee
Q psy2305         305 NGVRW  309 (334)
Q Consensus       305 ~~~~~  309 (334)
                      ..++|
T Consensus       315 ~~~~~  319 (328)
T 3dsm_A          315 GAFCW  319 (328)
T ss_dssp             EEEEE
T ss_pred             ceEEE
Confidence            55555

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.77  E-value=1.9e-16  Score=144.90  Aligned_cols=228  Identities=6%  Similarity=-0.062  Sum_probs=148.1

Q ss_pred             eeEEEEEEecccceecCCCcEEEE-----eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C
Q psy2305          59 GIIYDYVWYPKTSSIDGFTSYFLC-----SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L  132 (334)
Q Consensus        59 ~~v~~~~~~~~~~~~s~~~~~l~~-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d  132 (334)
                      ..+..++|       ||||++|+.     |+.+..|++||+.+++.+.  ..  +.... ....++|+|||+.|+.++ +
T Consensus       121 ~~~~~~~~-------SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~--~~~~~-~~~~~~wspDg~~l~~~~~d  188 (695)
T 2bkl_A          121 VSLGTWAV-------SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VD--VIEGG-KYATPKWTPDSKGFYYEWLP  188 (695)
T ss_dssp             EEEEEEEE-------CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SC--CBSCC-TTCCCEECTTSSEEEEEECC
T ss_pred             EEEEEEEE-------CCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--Cc--ccCcc-cccceEEecCCCEEEEEEec
Confidence            34666566       789999984     3445689999999987641  11  11100 126899999999998775 5


Q ss_pred             Cc-------------EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCC----eEEEEECCCCCceE
Q psy2305         133 SE-------------VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK----IIGLFSDSDGRPLF  195 (334)
Q Consensus       133 ~~-------------i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~  195 (334)
                      ..             |++|++.+........ .....+...+..+.|+|+|+ +|+..+.++    .|++++..+++ ..
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv-~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~~-~~  265 (695)
T 2bkl_A          189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVV-HERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGEKD-FR  265 (695)
T ss_dssp             CCTTSCGGGGGGGCEEEEEETTSCGGGCEEE-ECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTCSS-CE
T ss_pred             CCCCCccccCCCCCEEEEEECCCCchhceEE-EecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCCCc-eE
Confidence            54             9999998632111110 02334556788999999999 777666555    67777765554 44


Q ss_pred             eeccCCCCeEEEEEccCCcEEEeeecC---CCeEEEEEccCCCcc--ceeecccccCCceEEEEecCCCceEEeeecCCc
Q psy2305         196 FLKGHNGGITHLEFSSNGILLFSGARK---DCEIICWDLRNPGCI--LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGD  270 (334)
Q Consensus       196 ~~~~~~~~i~~~~~~~~~~~l~~~~~~---d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~  270 (334)
                      .+..+...+....+ ++|. |+..+..   ++.|.+||+.+ +..  ...+..+.....+..++|+ ++.++++...|+.
T Consensus       266 ~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~  341 (695)
T 2bkl_A          266 LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAK-PARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT  341 (695)
T ss_dssp             EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTB-CSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred             EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCC-CCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            55556556666666 6777 5555511   57899999876 332  2334333223456667787 7788888889998


Q ss_pred             EEEEeCC-CCCCCCCCCccccccccceeccc-ccccceeeeccCCCcccceeeEE
Q psy2305         271 LSIWNVN-TSNLPSSPYEESVQEPLYKFSAH-QDCTNGVRWKHHKFERDLLVADA  323 (334)
Q Consensus       271 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~s~~~~~~~~~l~  323 (334)
                      .+||.+. .+            +....+..+ .+.+..+.+  +|++    +.|+
T Consensus       342 ~~l~~~~~~g------------~~~~~l~~~~~~~v~~~~~--s~d~----~~l~  378 (695)
T 2bkl_A          342 SEVRVATLKG------------KPVRTVQLPGVGAASNLMG--LEDL----DDAY  378 (695)
T ss_dssp             EEEEEEETTC------------CEEEECCCSSSSEECCCBS--CTTC----SEEE
T ss_pred             EEEEEEeCCC------------CeeEEecCCCCeEEEEeec--CCCC----CEEE
Confidence            8888654 23            333444444 567888999  9988    6665

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.77  E-value=1.7e-14  Score=118.07  Aligned_cols=273  Identities=10%  Similarity=0.110  Sum_probs=182.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeee-eeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKI-KEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      ..+.+++++++|+.+++...++.|.+|+.. ++..               .+.. .....+.+++       ++++++++
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---------------~~~~~~~~~~~~~i~-------~~~~g~l~   76 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---------------EFEVPTPDAKVMCLI-------VSSLGDIW   76 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---------------EEECSSTTCCEEEEE-------ECTTSCEE
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---------------EEECCCCCCcceeEE-------ECCCCCEE
Confidence            357889999999977777678999999987 5443               1111 1113344444       47789887


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++...++.|..+|.. ++.. .+......   ..+..+++.++|+++++.. ++.|..+|..  ++....   .......
T Consensus        77 v~~~~~~~v~~~d~~-g~~~-~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~---~~~~~~~  146 (300)
T 2qc5_A           77 FTENGANKIGKLSKK-GGFT-EYPLPQPD---SGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIYEY---DLPNKGS  146 (300)
T ss_dssp             EEETTTTEEEEECTT-SCEE-EEECSSTT---CCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEEEE---ECSSTTC
T ss_pred             EEecCCCeEEEECCC-CCeE-EecCCCCC---CCCccceECCCCCEEEEccCCCeEEEECCC--CCEEEc---cCCCCCC
Confidence            777667889999987 6543 23221111   1688999999998877776 7889999876  433321   2233445


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe-eccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF-LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      .+.++++.++++ +.++...++.|..||. +++.... +..+...+..+++.++|+..++.. ..+.|.+||..  +...
T Consensus       147 ~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~~--g~~~  221 (300)
T 2qc5_A          147 YPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRITTT--GEIS  221 (300)
T ss_dssp             CEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECTT--CCEE
T ss_pred             CceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcCC--CcEE
Confidence            788999999998 7776666789999998 5554332 223445688999999997666665 57789999983  3322


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL  318 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~  318 (334)
                      . +........+..++++++|+++++...++.|..|+.. +.           .....+......+.++++  .+++   
T Consensus       222 ~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-----------~~~~~~~~~~~~~~~i~~--~~~g---  283 (300)
T 2qc5_A          222 E-YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT-----------IQEYQLQTENAEPHGITF--GKDG---  283 (300)
T ss_dssp             E-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-----------EEEEECCSTTCCCCCEEE--CTTS---
T ss_pred             E-EECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc-----------EEEEECCccCCccceeEe--CCCC---
Confidence            2 2111124456788999999877776667899999983 31           111222323456889999  9999   


Q ss_pred             eeeEEeeecceeee
Q psy2305         319 LVADATCSGQITNV  332 (334)
Q Consensus       319 ~~~l~t~~~d~~i~  332 (334)
                       .++++.. .+.++
T Consensus       284 -~l~v~~~-~~i~~  295 (300)
T 2qc5_A          284 -SVWFALK-CKIGK  295 (300)
T ss_dssp             -CEEEECS-SEEEE
T ss_pred             -CEEEEcc-CceEE
Confidence             8766665 34443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.76  E-value=5.5e-16  Score=125.23  Aligned_cols=213  Identities=12%  Similarity=0.010  Sum_probs=161.9

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccccc
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      .+++|++++.++.|.+||.++|+.+..+..+.. .   .+.++.++|+|++|+ +.++.|..||. + ++.+..    +.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-~---~~~~~~~~pdG~ilv-s~~~~V~~~d~-~-G~~~W~----~~   72 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-W---ECNSVAATKAGEILF-SYSKGAKMITR-D-GRELWN----IA   72 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-C---CCCEEEECTTSCEEE-ECBSEEEEECT-T-SCEEEE----EE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-C---CCcCeEECCCCCEEE-eCCCCEEEECC-C-CCEEEE----Ec
Confidence            457899999999999999999999998876431 1   578999999999888 45778999998 4 776664    33


Q ss_pred             cc-ccceEEEEEcCCCCcEEEEeec-CCeEEEEECCCCCceEeecc------CCCCeEEEEEccCCcEEEeeecCCCeEE
Q psy2305         156 FR-KNIVSAIAINPVHPDICALGTY-SKIIGLFSDSDGRPLFFLKG------HNGGITHLEFSSNGILLFSGARKDCEII  227 (334)
Q Consensus       156 ~~-~~~v~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~~d~~i~  227 (334)
                      .+ ...+.++.+.|+|+ ++++.+. ++.|..+|. +++.+..+..      +......+++.++|+++++.. .++.|.
T Consensus        73 ~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-~~~~v~  149 (276)
T 3no2_A           73 APAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-ATSEVR  149 (276)
T ss_dssp             CCTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-TTTEEE
T ss_pred             CCCCccccccEECCCCC-EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-CCCEEE
Confidence            22 34688999999999 8887776 788888885 7777766541      222345667899999999998 899999


Q ss_pred             EEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccc------
Q psy2305         228 CWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ------  301 (334)
Q Consensus       228 iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------  301 (334)
                      .||..  ++.+.++...   .........++|++++++..+++|..+|..++            +.+.++..+.      
T Consensus       150 ~~d~~--G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG------------~~~w~~~~~~~~~~~l  212 (276)
T 3no2_A          150 EIAPN--GQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN------------RIVRRVNANDIEGVQL  212 (276)
T ss_dssp             EECTT--SCEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTC------------CEEEEEEGGGSBSCCC
T ss_pred             EECCC--CCEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC------------cEEEEecCCCCCCccc
Confidence            99986  7777777653   23344667899999999988889999999988            5555554321      


Q ss_pred             cccceeeeccCCCcccceeeEEee
Q psy2305         302 DCTNGVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       302 ~~i~~~~~~~s~~~~~~~~~l~t~  325 (334)
                      ..+..+..  .+++    .++++.
T Consensus       213 ~~~~~~~~--~~~G----~i~v~~  230 (276)
T 3no2_A          213 FFVAQLFP--LQNG----GLYICN  230 (276)
T ss_dssp             SEEEEEEE--CTTS----CEEEEE
T ss_pred             cccccceE--cCCC----CEEEEe
Confidence            23677778  8888    777776

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.76  E-value=2.2e-17  Score=140.78  Aligned_cols=222  Identities=5%  Similarity=-0.121  Sum_probs=144.0

Q ss_pred             ccceecCCCcEEEEeeCC---CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCC
Q psy2305          69 KTSSIDGFTSYFLCSSMY---APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPG  144 (334)
Q Consensus        69 ~~~~~s~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~  144 (334)
                      ..++|+|||++|+.....   ..|.+||+.+++..........     ....+.|+|||+.|+... ++.|.+||+.. +
T Consensus        39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~-----~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-~  112 (396)
T 3c5m_A           39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGD-----NTFGGFISTDERAFFYVKNELNLMKVDLET-L  112 (396)
T ss_dssp             TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCB-----CTTTCEECTTSSEEEEEETTTEEEEEETTT-C
T ss_pred             ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCC-----ccccceECCCCCEEEEEEcCCcEEEEECCC-C
Confidence            346679999998876543   3688889988876543322111     223478999999998776 77899999986 3


Q ss_pred             CeeeeecccccccccceEE-------------------EEEcCCCCcEEEEe-----ecCCeEEEEECCCCCceEeeccC
Q psy2305         145 RECVSRNLKPWFRKNIVSA-------------------IAINPVHPDICALG-----TYSKIIGLFSDSDGRPLFFLKGH  200 (334)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~  200 (334)
                      ....    ....+......                   +.|+|+++ .++..     ..+..|++||+.+++..... .+
T Consensus       113 ~~~~----~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~  186 (396)
T 3c5m_A          113 EEQV----IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETGELEVIH-QD  186 (396)
T ss_dssp             CEEE----EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EE
T ss_pred             CcEE----EEecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCCcEEeec-cC
Confidence            3322    11212222112                   35678877 55543     35678999999888765444 46


Q ss_pred             CCCeEEEEEcc-CCcEEEeeecCC------CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----
Q psy2305         201 NGGITHLEFSS-NGILLFSGARKD------CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----  268 (334)
Q Consensus       201 ~~~i~~~~~~~-~~~~l~~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----  268 (334)
                      ...+..+.|+| +++.|+..+ .+      ..|.+||+.. +. ...+..+.....+..+.|+|+|++|+.++.+     
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~-~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (396)
T 3c5m_A          187 TAWLGHPIYRPFDDSTVGFCH-EGPHDLVDARMWLVNEDG-SN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD  263 (396)
T ss_dssp             SSCEEEEEEETTEEEEEEEEE-CSCSSSCSCCCEEEETTS-CC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred             CcccccceECCCCCCEEEEEe-cCCCCCCCceEEEEECCC-Cc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence            67889999999 888777766 33      3688888764 33 3333322113346678999999988777543     


Q ss_pred             CcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCC-CcccceeeEEeee
Q psy2305         269 GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHK-FERDLLVADATCS  326 (334)
Q Consensus       269 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~-~~~~~~~~l~t~~  326 (334)
                      +.|++||+.+++.          ..+..+.+    .. +.|  +| ++    ++|++++
T Consensus       264 ~~l~~~d~~~g~~----------~~l~~~~~----~~-~~~--s~~dg----~~l~~~~  301 (396)
T 3c5m_A          264 RVIYKANPETLEN----------EEVMVMPP----CS-HLM--SNFDG----SLMVGDG  301 (396)
T ss_dssp             EEEEEECTTTCCE----------EEEEECCS----EE-EEE--ECSSS----SEEEEEE
T ss_pred             ceEEEEECCCCCe----------EEeeeCCC----CC-CCc--cCCCC----ceEEEec
Confidence            4499999988631          11222221    22 889  99 99    8887754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.75  E-value=6.2e-15  Score=121.58  Aligned_cols=242  Identities=13%  Similarity=0.116  Sum_probs=159.2

Q ss_pred             CceeEEEEcCCCcEEEE-------eeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeee----eeceeEEEEEEeccc
Q psy2305           2 DIEEDVDEAPDGTCLLT-------NSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKI----KEGGIIYDYVWYPKT   70 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~-------~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~   70 (334)
                      ....+++|+++|.++++       +..++.|.+|+..+++..               .+..    .+...+.++.+    
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~---------------~~~~~~~~~~~~~~~~i~~----   78 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT---------------VICKPEVNGYGGIPAGCQC----   78 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE---------------EEECCEETTEECCEEEEEE----
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE---------------EEEecccCCCCCCCceEEE----
Confidence            34678999999988877       677899999998877653               1111    01233445444    


Q ss_pred             ceecCC-CcEEEEeeCCCcEEEEeCCCCeeeEE-EcCccccccccceeEEEEcCCCCEEEEee-C---------------
Q psy2305          71 SSIDGF-TSYFLCSSMYAPIHLWDSVGGEIKAT-YRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L---------------  132 (334)
Q Consensus        71 ~~~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---------------  132 (334)
                         +++ ++++++.. .+.|.+||.. ++.... ..... ......+..++++++|+++++.. +               
T Consensus        79 ---~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~  152 (314)
T 1pjx_A           79 ---DRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSE-GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             ---CSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTT-SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ---ecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCC-CccccCCcCEEECCCCCEEEEecCcccccccccccccCCC
Confidence               778 77555554 4469999987 665432 22111 11112578999999998877664 4               


Q ss_pred             CcEEEEEcCCCCCeeeeecccccccccceEEEEEc----CCCCcEEEEeecCCeEEEEECC-CCC-----ceEeeccCC-
Q psy2305         133 SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN----PVHPDICALGTYSKIIGLFSDS-DGR-----PLFFLKGHN-  201 (334)
Q Consensus       133 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~i~d~~-~~~-----~~~~~~~~~-  201 (334)
                      +.|..|+..  +....     ...+......++++    |+++.++++...++.|.+||+. +++     ....+..+. 
T Consensus       153 ~~l~~~~~~--g~~~~-----~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~  225 (314)
T 1pjx_A          153 GSIYCFTTD--GQMIQ-----VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             EEEEEECTT--SCEEE-----EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             CeEEEECCC--CCEEE-----eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence            455555543  33221     22333456889999    9997234444567899999986 343     222333343 


Q ss_pred             CCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEE-eeecCCcEEEEeCCCC
Q psy2305         202 GGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLL-SGNTNGDLSIWNVNTS  279 (334)
Q Consensus       202 ~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~  279 (334)
                      ..+..++++++|+++++.. .++.|.+||..+ ++....+..+  ...+.+++|+|+|+.|+ +...++.|..|++...
T Consensus       226 ~~p~~i~~d~~G~l~v~~~-~~~~i~~~d~~~-g~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANW-GSSHIEVFGPDG-GQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEE-TTTEEEEECTTC-BSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCCceEECCCCCEEEEEc-CCCEEEEEcCCC-CcEeEEEeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            5678999999998888777 688999999875 4544555433  35678899999999554 4455678999998764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.73  E-value=3e-15  Score=137.88  Aligned_cols=242  Identities=10%  Similarity=-0.036  Sum_probs=156.5

Q ss_pred             ceeEEEEcCCCcEEEEeeCC-----CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           3 IEEDVDEAPDGTCLLTNSND-----NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      .+..++|||||++||.++.+     ..|++||+.+++...               ... +...+.       .++|+|| 
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~---------------~~~-~~~~~~-------~~~wspD-  219 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA---------------DEL-KWVKFS-------GLAWLGN-  219 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE---------------EEE-EEEESC-------CCEESTT-
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC---------------ccC-CCceec-------cEEEECC-
Confidence            46789999999999887643     469999999987641               111 111112       3455889 


Q ss_pred             cEEEEeeCCCc--------------EEEEeCCCCee--eEEEcCccccccccceeEEEEcCCCCEEEEee-CC-----cE
Q psy2305          78 SYFLCSSMYAP--------------IHLWDSVGGEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS-----EV  135 (334)
Q Consensus        78 ~~l~~~~~d~~--------------i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~-----~i  135 (334)
                      +.|+.++.++.              |++|++.++..  ...+....+.   ..+..+.|+|||++|+... ++     .|
T Consensus       220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~~~~l  296 (741)
T 1yr2_A          220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP---KRGHGASVSSDGRWVVITSSEGTDPVNTV  296 (741)
T ss_dssp             SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT---TCEEEEEECTTSCEEEEEEECTTCSCCEE
T ss_pred             CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC---eEEEEEEECCCCCEEEEEEEccCCCcceE
Confidence            88888876654              88999877652  2333332221   1478999999999888554 43     79


Q ss_pred             EEEEcCCCCCe-eeeecccccccccceEEEEEcCCCCcEEEEeec----CCeEEEEECCCC--CceEeeccCCCCeEEEE
Q psy2305         136 KIFSTDRPGRE-CVSRNLKPWFRKNIVSAIAINPVHPDICALGTY----SKIIGLFSDSDG--RPLFFLKGHNGGITHLE  208 (334)
Q Consensus       136 ~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~--~~~~~~~~~~~~i~~~~  208 (334)
                      .+||+..+... ..    .+..+...+.... +|+|+ .|+..+.    ++.|.+||+.++  +....+..+...+..+.
T Consensus       297 ~~~d~~~~~~~~~~----~l~~~~~~~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~  370 (741)
T 1yr2_A          297 HVARVTNGKIGPVT----ALIPDLKAQWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG  370 (741)
T ss_dssp             EEEEEETTEECCCE----EEECSSSSCEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE
T ss_pred             EEEECCCCCCcccE----EecCCCCceEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE
Confidence            99999852112 22    2333444444443 48888 6666654    456999999875  23333444555566788


Q ss_pred             EccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEee----ecCCcEEEEeCCCCC
Q psy2305         209 FSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSG----NTNGDLSIWNVNTSN  280 (334)
Q Consensus       209 ~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~  280 (334)
                      ++ ++.++++.. .|+..+||.+...+.....+..+ ....+..+.++|+++.|+..    ...++|++||+.+++
T Consensus       371 ~~-~~~lv~~~~-~dg~~~l~~~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          371 IA-GNRLFASYI-HDAKSQVLAFDLDGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EE-BTEEEEEEE-ETTEEEEEEEETTSCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EE-CCEEEEEEE-ECCEEEEEEEeCCCCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            87 566777777 79988888766334444544422 24557778899998866632    335789999998763

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.73  E-value=9.1e-15  Score=120.58  Aligned_cols=235  Identities=10%  Similarity=0.068  Sum_probs=152.6

Q ss_pred             ceecCCCcEEEE-------eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC-CCEEEEeeCCcEEEEEcCC
Q psy2305          71 SSIDGFTSYFLC-------SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD-GNKIYAGFLSEVKIFSTDR  142 (334)
Q Consensus        71 ~~~s~~~~~l~~-------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~d~~i~i~d~~~  142 (334)
                      ++|+++++++++       ...++.|.+||..+++....... ........+..++++++ ++++++...+.|.+||.. 
T Consensus        23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-  100 (314)
T 1pjx_A           23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-EVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-  100 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-EETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-
T ss_pred             ceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec-ccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-
Confidence            444778988877       56788999999888776432220 00001126889999999 776666555578899987 


Q ss_pred             CCCeeee-ecccccccccceEEEEEcCCCCcEEEEeecC---------------CeEEEEECCCCCceEeeccCCCCeEE
Q psy2305         143 PGRECVS-RNLKPWFRKNIVSAIAINPVHPDICALGTYS---------------KIIGLFSDSDGRPLFFLKGHNGGITH  206 (334)
Q Consensus       143 ~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~i~~  206 (334)
                       ++.... ...........+.+++++++|+ ++++...+               +.|..||.. ++... +..+......
T Consensus       101 -g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~  176 (314)
T 1pjx_A          101 -GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNG  176 (314)
T ss_dssp             -SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEE
T ss_pred             -CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcce
Confidence             333221 0000011224588999999998 66665544               578888865 54433 3333445688


Q ss_pred             EEEc----cCCcEEEeeecCCCeEEEEEccCCCcc-----ceeecccccC-CceEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305         207 LEFS----SNGILLFSGARKDCEIICWDLRNPGCI-----LHTFPRQVST-NQRVYFDLTSCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       207 ~~~~----~~~~~l~~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  276 (334)
                      ++|+    |+++.|+++...++.|.+||+...+..     ...+..+  . .....++++++|+++++...++.|.+||.
T Consensus       177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~  254 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT--HEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC--SSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC--CCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence            9999    999776665425789999998731321     1111111  1 44667889999998888777889999999


Q ss_pred             CCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeee-cceee
Q psy2305         277 NTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCS-GQITN  331 (334)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~-~d~~i  331 (334)
                      .++            +.+..+..+...+.+++|  +|++    +.|..++ .++.|
T Consensus       255 ~~g------------~~~~~~~~~~~~~~~i~~--~~dg----~~l~v~~~~~~~l  292 (314)
T 1pjx_A          255 DGG------------QPKMRIRCPFEKPSNLHF--KPQT----KTIFVTEHENNAV  292 (314)
T ss_dssp             TCB------------SCSEEEECSSSCEEEEEE--CTTS----SEEEEEETTTTEE
T ss_pred             CCC------------cEeEEEeCCCCCceeEEE--CCCC----CEEEEEeCCCCeE
Confidence            866            444455555567899999  9999    8555444 44444

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.70  E-value=2.1e-14  Score=119.56  Aligned_cols=265  Identities=14%  Similarity=0.107  Sum_probs=163.4

Q ss_pred             EEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305           6 DVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~   75 (334)
                      .++++|||++|+++.          .++.|.+||..+.+...              .+....+... ..--.|..++++|
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~--------------~I~v~~g~r~-~~g~~P~~~a~sp  146 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA--------------DIELPDAPRF-LVGTYPWMTSLTP  146 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE--------------EEEETTCCCC-CBSCCGGGEEECT
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEE--------------EEECCCcccc-ccCCCCceEEEcC
Confidence            389999999888775          36789999999988762              2221110000 0001356678899


Q ss_pred             CCcEEEEeeC--CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305          76 FTSYFLCSSM--YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        76 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      ||++++++..  ++.|.++|+.+++.+..+....       . ...+....+.+++.+ ||.+.+.++...++.......
T Consensus       147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~  218 (386)
T 3sjl_D          147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  218 (386)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecc
Confidence            9999888764  6889999999999998886422       1 112222233444333 677766666543333221100


Q ss_pred             cccccccceE-EEEEc-CCCCcEEEEeecCCeEEEEECCCCCc--eEeec---------c-CCCCeEEEEEccCCcEEEe
Q psy2305         153 KPWFRKNIVS-AIAIN-PVHPDICALGTYSKIIGLFSDSDGRP--LFFLK---------G-HNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       153 ~~~~~~~~v~-~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~---------~-~~~~i~~~~~~~~~~~l~~  218 (334)
                      .+.....++. ...|. ++|+ +++ .+.+|.|++.|+.+...  ...+.         + ..+....++++|+++.+++
T Consensus       219 ~~~~~~~~~~~~~~~~~~dG~-~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV  296 (386)
T 3sjl_D          219 VFHPEDEFLINHPAYSQKAGR-LVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL  296 (386)
T ss_dssp             CCSCTTSCBCSCCEEETTTTE-EEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             eeccccccccccceeEcCCCc-EEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEE
Confidence            1111112221 23554 6775 444 55689999999976542  22221         0 1223345778999998888


Q ss_pred             eecC---------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCc-eEEee-ecCCcEEEEeCCCCCCCCCCCc
Q psy2305         219 GARK---------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSG-NTNGDLSIWNVNTSNLPSSPYE  287 (334)
Q Consensus       219 ~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~  287 (334)
                      ....         .+.|.+.|+.+ .+.+..+.-   ...+..+++++|++ +|++. ..++.|.++|..++        
T Consensus       297 ~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~--------  364 (386)
T 3sjl_D          297 LVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG--------  364 (386)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC--------
T ss_pred             EeccccccccCCCCCEEEEEECCC-CeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC--------
Confidence            6511         25799999998 676776653   23566789999997 66664 45899999999998        


Q ss_pred             cccccccceecccccccceeeeccCCC
Q psy2305         288 ESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       288 ~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                          +.+..+... +.-+.|.+  ++|
T Consensus       365 ----k~~~~i~~~-~~p~~l~~--s~d  384 (386)
T 3sjl_D          365 ----EELRSVNQL-GHGPQVIT--TAD  384 (386)
T ss_dssp             ----CEEEEECCC-CSSCCEEE--ECC
T ss_pred             ----cEEEEecCC-CCCceeEE--CCc
Confidence                566666542 33456666  654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.70  E-value=9.9e-15  Score=134.45  Aligned_cols=221  Identities=10%  Similarity=-0.019  Sum_probs=141.6

Q ss_pred             eecCCCcEEEEeeCC-----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC------------
Q psy2305          72 SIDGFTSYFLCSSMY-----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS------------  133 (334)
Q Consensus        72 ~~s~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~------------  133 (334)
                      +|||||++|+.++.+     ..|++||+.+++.+.... ...     .+..++|+|| +.|+.+. ++            
T Consensus       169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~-----~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWV-----KFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEE-----ESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCc-----eeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence            348899999887543     369999999988754311 111     2357899999 8888664 43            


Q ss_pred             --cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCC-----eEEEEECCCC--CceEeeccCCCCe
Q psy2305         134 --EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK-----IIGLFSDSDG--RPLFFLKGHNGGI  204 (334)
Q Consensus       134 --~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~i  204 (334)
                        .|++|++.+........ .....+...+..+.|+|+|+ +|+..+.++     .|++||+.++  +....+..+...+
T Consensus       242 ~~~v~~~~lgt~~~~~~lv-~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  319 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPV-FATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ  319 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEE-ECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred             CCEEEEEECCCCchhCEEE-eccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence              38889987632111110 02223334588999999999 777666543     8999999876  4245555555555


Q ss_pred             EEEEEccCCcEEEeeecC----CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCC-CC
Q psy2305         205 THLEFSSNGILLFSGARK----DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN-TS  279 (334)
Q Consensus       205 ~~~~~~~~~~~l~~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~  279 (334)
                      .... +|+|+.|+..+ .    ++.|.+||+.........+..+ ....+..+.++ ++.++++...|+..+||.+. .+
T Consensus       320 ~~~~-~~dg~~l~~~s-~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g  395 (741)
T 1yr2_A          320 WDFV-DGVGDQLWFVS-GDGAPLKKIVRVDLSGSTPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG  395 (741)
T ss_dssp             EEEE-EEETTEEEEEE-CTTCTTCEEEEEECSSSSCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS
T ss_pred             EEEE-eccCCEEEEEE-CCCCCCCEEEEEeCCCCccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence            5553 48999888877 4    3459999987621122333322 13345566776 66778888889887777554 23


Q ss_pred             CCCCCCCccccccccceecc-cccccceeeeccCCCcccceeeEE
Q psy2305         280 NLPSSPYEESVQEPLYKFSA-HQDCTNGVRWKHHKFERDLLVADA  323 (334)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~s~~~~~~~~~l~  323 (334)
                                  .....+.. +.+.+..+.+  +|++    +.|+
T Consensus       396 ------------~~~~~l~~~~~~~v~~~~~--s~d~----~~l~  422 (741)
T 1yr2_A          396 ------------KPAGAVSLPGIGSASGLSG--RPGD----RHAY  422 (741)
T ss_dssp             ------------CEEEECBCSSSCEEEEEEC--CBTC----SCEE
T ss_pred             ------------CceeeccCCCCeEEEEeec--CCCC----CEEE
Confidence                        33344443 3567888999  9998    6555

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.70  E-value=1.6e-13  Score=115.55  Aligned_cols=269  Identities=11%  Similarity=-0.049  Sum_probs=173.5

Q ss_pred             EcCCCcEEEEeeC--CC---eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           9 EAPDGTCLLTNSN--DN---HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         9 ~sp~~~~l~~~~~--d~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      ..|+++++++...  ..   +|.+||..+++..              ..+...         ..| .++++||+++++++
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~--------------~~i~~g---------~~p-~i~~spDg~~lyv~   83 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL--------------GHVNGG---------FLP-NPVAAHSGSEFALA   83 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEE--------------EEecCC---------CCC-CeEECCCCCEEEEE
Confidence            3478887777653  22   8899999988764              222221         123 46679999999888


Q ss_pred             e----------CCCcEEEEeCCCCeeeEEEcCc--cccccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeee
Q psy2305          84 S----------MYAPIHLWDSVGGEIKATYRPY--NQVDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECV  148 (334)
Q Consensus        84 ~----------~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~  148 (334)
                      .          .++.|.+||..+.+.+..+...  ...........++|+|||++|++++   ++.|.++| .+ ++...
T Consensus        84 n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t-~~~~~  161 (373)
T 2mad_H           84 STSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG-GSSDD  161 (373)
T ss_pred             eccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC-CCEEe
Confidence            5          3678999999988887776542  1000001346899999999999764   47899999 75 55544


Q ss_pred             e-ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-----cCCCCe-EEEEEccCCcEEEeeec
Q psy2305         149 S-RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-----GHNGGI-THLEFSSNGILLFSGAR  221 (334)
Q Consensus       149 ~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i-~~~~~~~~~~~l~~~~~  221 (334)
                      . .+     ...   ++.+.|+++..+++.+.||.+.++|. +++......     ....++ ....+.+++..++..+ 
T Consensus       162 ~~i~-----~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-  231 (373)
T 2mad_H          162 QLLS-----SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-  231 (373)
T ss_pred             EEcC-----CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-
Confidence            2 21     111   24566776546777788999999999 777663321     111221 2356677766666666 


Q ss_pred             CCCeEEEEEccCCC-ccceeeccc--------ccCCceEEEEecCCCceEEeeec----------CCcEEEEeCCCCCCC
Q psy2305         222 KDCEIICWDLRNPG-CILHTFPRQ--------VSTNQRVYFDLTSCSNYLLSGNT----------NGDLSIWNVNTSNLP  282 (334)
Q Consensus       222 ~d~~i~iwd~~~~~-~~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~  282 (334)
                      .++.+.+.|+.... .....+...        ........+.++|+++.++++..          .+.|.++|+.+.   
T Consensus       232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---  308 (373)
T 2mad_H          232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---  308 (373)
T ss_pred             CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---
Confidence            68899999997521 111222100        00122233678999988877643          357999999997   


Q ss_pred             CCCCccccccccceecccccccceeeeccCCCccccee-eEEeee-cceeee
Q psy2305         283 SSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV-ADATCS-GQITNV  332 (334)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~-~l~t~~-~d~~i~  332 (334)
                               +.+..+.. ......++|  +||+    + +++++. .++.+.
T Consensus       309 ---------~vv~~i~~-g~~p~~i~~--s~Dg----~~~l~v~~~~~~~V~  344 (373)
T 2mad_H          309 ---------QTSSQISL-GHDVDAISV--AQDG----GPDLYALSAGTEVLH  344 (373)
T ss_pred             ---------EEEEEEEC-CCCcCeEEE--CCCC----CeEEEEEcCCCCeEE
Confidence                     56666643 335799999  9999    8 777776 466664

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.69  E-value=2.8e-13  Score=110.85  Aligned_cols=228  Identities=9%  Similarity=-0.016  Sum_probs=150.8

Q ss_pred             eeEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           4 EEDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         4 V~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      -.+..|+|+ +.++++...++.|..||..++...               .+  .....+.++++       +++++++++
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------------~~--~~~~~~~~i~~-------~~dG~l~v~   70 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---------------RV--TMDAPVSSVAL-------RQSGGYVAT   70 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---------------EE--ECSSCEEEEEE-------BTTSSEEEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---------------EE--eCCCceEEEEE-------CCCCCEEEE
Confidence            357889995 445566667899999999877643               11  12345555555       779995554


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C---------CcEEEEEcCCCCCeeeeecc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L---------SEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---------~~i~i~d~~~~~~~~~~~~~  152 (334)
                       . ++.|.+||.++++.......... .....+..++++|+|+++++.. .         ..-.+|.+...+....    
T Consensus        71 -~-~~~l~~~d~~~g~~~~~~~~~~~-~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----  143 (297)
T 3g4e_A           71 -I-GTKFCALNWKEQSAVVLATVDND-KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK----  143 (297)
T ss_dssp             -E-TTEEEEEETTTTEEEEEEECCTT-CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE----
T ss_pred             -E-CCeEEEEECCCCcEEEEEecCCC-CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE----
Confidence             3 56799999988876443332111 1112678999999999777542 2         2346666654233222    


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEEC--CCCCc-----eEeeccCCCCeEEEEEccCCcEEEeeecCCCe
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSD--SDGRP-----LFFLKGHNGGITHLEFSSNGILLFSGARKDCE  225 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~  225 (334)
                       ........+.++|+|+++.++++.+.++.|..||+  .++..     ...+..+.+....++++++|++.++.. ..+.
T Consensus       144 -~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~  221 (297)
T 3g4e_A          144 -YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-NGGR  221 (297)
T ss_dssp             -EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-TTTE
T ss_pred             -EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-CCCE
Confidence             22333456899999999834455666889999997  45543     222333446678999999998777776 6888


Q ss_pred             EEEEEccCCCccceeecccccCCceEEEEec-CCCceEEeeec
Q psy2305         226 IICWDLRNPGCILHTFPRQVSTNQRVYFDLT-SCSNYLLSGNT  267 (334)
Q Consensus       226 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~~~~  267 (334)
                      |.+||..+ ++.+..+...  ...+.+++|. |+++.|++++.
T Consensus       222 v~~~d~~t-G~~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          222 VIRLDPVT-GKRLQTVKLP--VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEECTTT-CCEEEEEECS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEEcCCC-ceEEEEEECC--CCCceEEEEeCCCCCEEEEEcC
Confidence            99999986 6666666543  3567889998 88877665543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.69  E-value=1.7e-13  Score=115.41  Aligned_cols=240  Identities=10%  Similarity=-0.009  Sum_probs=155.7

Q ss_pred             EEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305           6 DVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~   75 (334)
                      .++++|||++|+++.          .++.|.+||..+.+...              .+.......... .-.|..++++|
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~--------------~i~~~~~~~~~~-g~~p~~~~~sp  134 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA--------------DIELPDAPRFDV-GPYSWMNANTP  134 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE--------------EEECCCcccccc-CCCccceEECC
Confidence            789999999998885          36789999998877652              221110000000 01244567799


Q ss_pred             CCcEEEEeeC--CCcEEEEeCCCCeeeEE-EcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCCeeeee
Q psy2305          76 FTSYFLCSSM--YAPIHLWDSVGGEIKAT-YRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        76 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~  150 (334)
                      ||++|+++..  ++.|.++| .+++.+.. +...         .++.+.|+++..+ +.. ||.+.++|. + ++.....
T Consensus       135 DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~---------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~-g~~~~~~  202 (373)
T 2mad_H          135 NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP---------TCYHIHPGAPSTFYLLCAQGGLAKTDH-A-GGAAGAG  202 (373)
T ss_pred             CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC---------ceEEEEeCCCceEEEEcCCCCEEEEEC-C-CcEEEEE
Confidence            9999998874  47899999 99988777 5431         1355667664443 333 899999999 5 5544211


Q ss_pred             cc--cccccccc-eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc--eEeecc----------CCCCeEEEEEccCCcE
Q psy2305         151 NL--KPWFRKNI-VSAIAINPVHPDICALGTYSKIIGLFSDSDGRP--LFFLKG----------HNGGITHLEFSSNGIL  215 (334)
Q Consensus       151 ~~--~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~----------~~~~i~~~~~~~~~~~  215 (334)
                      ..  .. ....+ .....+.+++. .++..+..+.+.+.|+.....  +..+.-          .......+.++|+++.
T Consensus       203 ~~~~~~-~~~~p~~~~~~~~~~~~-~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~  280 (373)
T 2mad_H          203 LVGAML-TAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG  280 (373)
T ss_pred             eccccc-cCCcceeecceeEecCC-EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence            00  01 11122 22345667766 444444788999999865432  222211          1223445789999998


Q ss_pred             EEeeecC----------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCc-eEEeee-cCCcEEEEeCCCC
Q psy2305         216 LFSGARK----------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSGN-TNGDLSIWNVNTS  279 (334)
Q Consensus       216 l~~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~  279 (334)
                      ++++. .          ++.|.++|..+ .+.+.++..   ......++|+|||+ +++++. .++.|.++|+.++
T Consensus       281 lyV~~-~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          281 IYLLT-SEQSAWKLHAAAKEVTSVTGLV-GQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             EEEEe-ccCCcccccCCCCeEEEEECCC-CEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            88865 3          35799999987 666666643   33567889999999 777776 4899999999998

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.68  E-value=8.1e-14  Score=114.03  Aligned_cols=223  Identities=10%  Similarity=0.021  Sum_probs=143.9

Q ss_pred             cCC-CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecc
Q psy2305          74 DGF-TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        74 s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      +++ +.++++...++.|..||..+++. ..+... .     .+.+++++++|+++++ .++.|.+||..+ ++.......
T Consensus        21 ~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~-~-----~~~~i~~~~dG~l~v~-~~~~l~~~d~~~-g~~~~~~~~   91 (297)
T 3g4e_A           21 EEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMD-A-----PVSSVALRQSGGYVAT-IGTKFCALNWKE-QSAVVLATV   91 (297)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTCCE-EEEECS-S-----CEEEEEEBTTSSEEEE-ETTEEEEEETTT-TEEEEEEEC
T ss_pred             ECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCC-C-----ceEEEEECCCCCEEEE-ECCeEEEEECCC-CcEEEEEec
Confidence            554 55666666788999999987765 333321 1     6889999999995554 467899999875 332211000


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeec-----------CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTY-----------SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR  221 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  221 (334)
                      ........+..++++|+|+ ++++...           .+.|..++.. ++. ..+..+......++|+|+++.|+.+..
T Consensus        92 ~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~spdg~~lyv~~~  168 (297)
T 3g4e_A           92 DNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWSLDHKIFYYIDS  168 (297)
T ss_dssp             CTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEECTTSCEEEEEEG
T ss_pred             CCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEcCCCCEEEEecC
Confidence            0011234578999999998 6654322           2345555532 333 333334445688999999997766553


Q ss_pred             CCCeEEEEEcc-CCCccc--eeecc-cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee
Q psy2305         222 KDCEIICWDLR-NPGCIL--HTFPR-QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF  297 (334)
Q Consensus       222 ~d~~i~iwd~~-~~~~~~--~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  297 (334)
                      .++.|.+||+. ..+...  ..+.. .........++++++|++.++....+.|..||..++            +.+..+
T Consensus       169 ~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG------------~~~~~i  236 (297)
T 3g4e_A          169 LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG------------KRLQTV  236 (297)
T ss_dssp             GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC------------CEEEEE
T ss_pred             CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc------------eEEEEE
Confidence            67899999984 213321  11111 111245667889999988888777888999999977            566677


Q ss_pred             cccccccceeeeccC-CCcccceeeEEeee
Q psy2305         298 SAHQDCTNGVRWKHH-KFERDLLVADATCS  326 (334)
Q Consensus       298 ~~~~~~i~~~~~~~s-~~~~~~~~~l~t~~  326 (334)
                      ..+...+++++|  . |++    +.|..++
T Consensus       237 ~~p~~~~t~~~f--~g~d~----~~L~vt~  260 (297)
T 3g4e_A          237 KLPVDKTTSCCF--GGKNY----SEMYVTC  260 (297)
T ss_dssp             ECSSSBEEEEEE--ESGGG----CEEEEEE
T ss_pred             ECCCCCceEEEE--eCCCC----CEEEEEc
Confidence            666667899999  8 887    6554443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.67  E-value=1e-13  Score=118.37  Aligned_cols=233  Identities=9%  Similarity=-0.017  Sum_probs=155.6

Q ss_pred             cccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC--cEEEEEcCCCC
Q psy2305          68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS--EVKIFSTDRPG  144 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~--~i~i~d~~~~~  144 (334)
                      |..++++++++++++...++.|++||..++..........      ... ++|+++++.|+++. ++  .|.+++... +
T Consensus       133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~------~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~-~  204 (409)
T 3hrp_A          133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK------GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS-G  204 (409)
T ss_dssp             EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC------BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG-T
T ss_pred             ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC------CCc-eeEecCCCcEEEEecCCCceEEEEEcCC-C
Confidence            5567789999988887778899999998887765554321      334 99999999888775 44  788888775 2


Q ss_pred             Ceeeeecccc-cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe----eccCCCCe-E-EEEEccCCcEEE
Q psy2305         145 RECVSRNLKP-WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF----LKGHNGGI-T-HLEFSSNGILLF  217 (334)
Q Consensus       145 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~i-~-~~~~~~~~~~l~  217 (334)
                      ....... .. ......+.+++++|++. .|+.+..++.|+.||..++.....    ..++...- . .++|+|++..|+
T Consensus       205 ~~~~~~g-~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          205 WAPTRIG-QLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             TCEEEEE-ECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             ceeEEee-eccchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            2222110 01 21445678899999544 455567788999999987653322    22222222 2 899999644444


Q ss_pred             eeecCCCeEEEEEccCCCccceeecccc-------------cCCceEEEEecCCCceEEeee-cCCcEEEEeCCCCCCCC
Q psy2305         218 SGARKDCEIICWDLRNPGCILHTFPRQV-------------STNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTSNLPS  283 (334)
Q Consensus       218 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~  283 (334)
                      .+....+.|+.|+...  . ...+.+..             .-.....++++|+|+++++-. .++.|+.|++.++.   
T Consensus       283 v~d~~~~~I~~~~~~g--~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~---  356 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDG--E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY---  356 (409)
T ss_dssp             EEETTTTEEEEECTTC--C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE---
T ss_pred             EEeCCCCEEEEEecCC--C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE---
Confidence            4443788999998764  2 22232221             013467799999999777777 78999999977652   


Q ss_pred             CCCccccccccceeccc---------------ccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         284 SPYEESVQEPLYKFSAH---------------QDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       284 ~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                                +..+.++               -.....+++  +|++    .++++-..+++|.
T Consensus       357 ----------v~~~~g~~~~~g~~~g~~~~~~~~~P~giav--d~~g----~lyVad~~n~~Ir  404 (409)
T 3hrp_A          357 ----------VSTVAGQVDVASQIDGTPLEATFNYPYDICY--DGEG----GYWIAEAWGKAIR  404 (409)
T ss_dssp             ----------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEE--CSSS----EEEEEESTTCEEE
T ss_pred             ----------EEEEeCCCCCCCcCCCChhceEeCCceEEEE--cCCC----CEEEEECCCCeEE
Confidence                      2222222               235788999  9999    8888888887765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.66  E-value=8.4e-14  Score=127.19  Aligned_cols=241  Identities=11%  Similarity=0.031  Sum_probs=156.2

Q ss_pred             ceeEEEEcCCCcEEEEe-----eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           3 IEEDVDEAPDGTCLLTN-----SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~-----~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      .+..++|||||++||.+     +....|++||+.+++...               .      .+....  ...++|+ |+
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~---------------~------~~~~~k--~~~~~Ws-Dg  185 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE---------------T------PLKDVK--FSGISWL-GN  185 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE---------------E------EEEEEE--SCCCEEE-TT
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc---------------c------ccCCce--eccEEEe-CC
Confidence            47788999999998843     334689999999988541               1      111111  1235569 99


Q ss_pred             cEEEEeeCCCc-------------EEEEeCCCCee--eEEEcCcc-ccccccceeEEEEcCCCCEEEEe-e----CCcEE
Q psy2305          78 SYFLCSSMYAP-------------IHLWDSVGGEI--KATYRPYN-QVDEVTHAYSLAFSLDGNKIYAG-F----LSEVK  136 (334)
Q Consensus        78 ~~l~~~~~d~~-------------i~iwd~~~~~~--~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~-~----d~~i~  136 (334)
                      +.|+.++.+..             |++|++.++..  ...+.... +.   .....+.|+|||++|+.. .    .+.|.
T Consensus       186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~~i~  262 (693)
T 3iuj_A          186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH---HRYVGATVTEDDRFLLISAANSTSGNRLY  262 (693)
T ss_dssp             TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC---CSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred             CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC---eEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence            99988887743             99999877643  33333322 11   146789999999988743 2    25899


Q ss_pred             EEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC---CeEEEEECCCCCc--eEeeccCCCCeEEEEEcc
Q psy2305         137 IFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS---KIIGLFSDSDGRP--LFFLKGHNGGITHLEFSS  211 (334)
Q Consensus       137 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~  211 (334)
                      ++|+..+.....    .+..+....... ++++|..+++....+   +.|..+|+.++..  ...+..|...+.  .|++
T Consensus       263 ~~d~~~~~~~~~----~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~  335 (693)
T 3iuj_A          263 VKDLSQENAPLL----TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS  335 (693)
T ss_dssp             EEETTSTTCCCE----EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE
T ss_pred             EEECCCCCCceE----EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE
Confidence            999976332333    234444444444 667776344454443   6899999987754  345655666655  8999


Q ss_pred             CCcEEEeeecCCC--eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC----CcEEEEeCCCCC
Q psy2305         212 NGILLFSGARKDC--EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN----GDLSIWNVNTSN  280 (334)
Q Consensus       212 ~~~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~  280 (334)
                      +++.|+...+.++  .|++||+..  .....+... ....+..+.++++++.|+....+    +.+..||+.+++
T Consensus       336 ~g~~lv~~~~~~g~~~l~~~d~~g--~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          336 GSGYLFAEYMVDATARVEQFDYEG--KRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             ETTEEEEEEEETTEEEEEEECTTS--CEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             ECCEEEEEEEECCeeEEEEEECCC--CeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            9998887763454  678888763  334444322 23456667788888877655444    789999988763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.66  E-value=4.2e-13  Score=109.64  Aligned_cols=227  Identities=13%  Similarity=0.061  Sum_probs=154.1

Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeee
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVS  149 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~  149 (334)
                      ++++++|+++++...++.|.+||.. ++... +......   ..+..+++.++|.++++.. ++.|..||..  +.....
T Consensus        20 i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~   92 (299)
T 2z2n_A           20 ITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTPD---AKVMCLTISSDGEVWFTENAANKIGRITKK--GIIKEY   92 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSSTT---CCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEE
T ss_pred             eEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCccc---CceeeEEECCCCCEEEeCCCCCeEEEECCC--CcEEEE
Confidence            3347899887776667899999987 55433 3211111   2688999999999888776 7889999976  332211


Q ss_pred             ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe-eccCCCCeEEEEEccCCcEEEeeecCCCeEEE
Q psy2305         150 RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF-LKGHNGGITHLEFSSNGILLFSGARKDCEIIC  228 (334)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i  228 (334)
                         ........+.++++.+++. ++++...++.|..||. +++.... +......+..+++.++|+.+++.. .++.|..
T Consensus        93 ---~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~  166 (299)
T 2z2n_A           93 ---TLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTEN-QNNAIGR  166 (299)
T ss_dssp             ---ECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEET-TTTEEEE
T ss_pred             ---eCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeC-CCCEEEE
Confidence               1222445788999999998 7777667889999998 5544322 233456789999999998777666 6789999


Q ss_pred             EEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceee
Q psy2305         229 WDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR  308 (334)
Q Consensus       229 wd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  308 (334)
                      ||. + +.... +........+..++++++|+++++...++.|.+||. ++..           .......+...+.+++
T Consensus       167 ~~~-~-g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-----------~~~~~~~~~~~~~~i~  231 (299)
T 2z2n_A          167 ITE-S-GDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-----------TEFKIPTPNARPHAIT  231 (299)
T ss_dssp             ECT-T-CCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-----------EEEECSSTTCCEEEEE
T ss_pred             EcC-C-CcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-----------EEEECCCCCCCceeEE
Confidence            998 4 44322 211112345678899999997777666889999998 5421           1112233445688999


Q ss_pred             eccCCCcccceeeEEeeecceee
Q psy2305         309 WKHHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       309 ~~~s~~~~~~~~~l~t~~~d~~i  331 (334)
                      +  ++++    +++++...++.|
T Consensus       232 ~--~~~g----~l~v~~~~~~~i  248 (299)
T 2z2n_A          232 A--GAGI----DLWFTEWGANKI  248 (299)
T ss_dssp             E--CSTT----CEEEEETTTTEE
T ss_pred             E--CCCC----CEEEeccCCceE
Confidence            9  9999    876665444444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.66  E-value=3.9e-13  Score=114.78  Aligned_cols=244  Identities=9%  Similarity=0.024  Sum_probs=156.6

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +....|+|+|+|+++++...++.|++||..++...               .+... ..       .|. ++++++++.|+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------~~~~~-~~-------~~~-ia~~~~g~~l~  186 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------TVHPG-FK-------GGK-PAVTKDKQRVY  186 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------EEEET-CC-------BCB-CEECTTSSEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------Eeecc-CC-------CCc-eeEecCCCcEE
Confidence            45789999999997777777899999999887654               12111 11       123 55688999888


Q ss_pred             EeeCCC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          82 CSSMYA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        82 ~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      ++..++  .|.+++...+.....+..... .....+.+++++|++..|+.+. ++.|..||... +...........+..
T Consensus       187 ~~d~~~~~~I~~~d~~~~~~~~~~g~~~~-~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~-~~~~~~~~~~~~g~~  264 (409)
T 3hrp_A          187 SIGWEGTHTVYVYMKASGWAPTRIGQLGS-TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT-QEVTLIKQLELSGSL  264 (409)
T ss_dssp             EEBSSTTCEEEEEEGGGTTCEEEEEECCT-TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT-CCEEEEEECCCCSCC
T ss_pred             EEecCCCceEEEEEcCCCceeEEeeeccc-hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC-CCEEEEecccccCCC
Confidence            887765  788888766554333310000 0011678999999555555555 78999999885 222111000012222


Q ss_pred             cce--EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC---------------CCeEEEEEccCCcEEEeeec
Q psy2305         159 NIV--SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN---------------GGITHLEFSSNGILLFSGAR  221 (334)
Q Consensus       159 ~~v--~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~l~~~~~  221 (334)
                      ..-  ..++|+|++..++++-..++.|+.|+... + +..+.++.               .....++++|+|+ |+.+..
T Consensus       265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~  341 (409)
T 3hrp_A          265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDG  341 (409)
T ss_dssp             CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEET
T ss_pred             CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeC
Confidence            222  39999996442666667788999999753 3 33333322               3478999999998 555553


Q ss_pred             -CCCeEEEEEccCCCccceeecccc-------------cCCceEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305         222 -KDCEIICWDLRNPGCILHTFPRQV-------------STNQRVYFDLTSCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       222 -~d~~i~iwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  276 (334)
                       .++.|+.|++.. +. +..+.++.             .-.....++++++|.++++-..+++|+.+++
T Consensus       342 ~~~~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          342 FKGYCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTTCEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             478999999754 44 33333220             0134678999999988888888888888765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.65  E-value=1.2e-13  Score=113.50  Aligned_cols=222  Identities=10%  Similarity=0.048  Sum_probs=146.8

Q ss_pred             cCCCc-EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeec
Q psy2305          74 DGFTS-YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        74 s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~  151 (334)
                      +|+++ ++++...++.|..|+. +++. ..+.....     .+..++++++|+++++.. ++.|..|+.+  +.......
T Consensus        53 ~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~-----~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~~~~~~  123 (305)
T 3dr2_A           53 WEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATA-----FTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQAHLLVG  123 (305)
T ss_dssp             EGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCS-----CEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEC
T ss_pred             eCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCC-----ccceeeECCCCCEEEEECCCCEEEEECCC--CCEEEEEe
Confidence            67888 5667777889999997 4543 33332222     678999999999777665 6789999975  43222100


Q ss_pred             ccccc-cccceEEEEEcCCCCcEEEE----eec-------------CCeEEEEECCCCCceEeeccCCCCeEEEEEccCC
Q psy2305         152 LKPWF-RKNIVSAIAINPVHPDICAL----GTY-------------SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG  213 (334)
Q Consensus       152 ~~~~~-~~~~v~~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  213 (334)
                       ...+ ....+..++++|+|+ +.++    |..             .+.|..||..+++.....  .......++|+|++
T Consensus       124 -~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg  199 (305)
T 3dr2_A          124 -RYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDE  199 (305)
T ss_dssp             -EETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTS
T ss_pred             -ccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCC
Confidence             1111 123567899999998 7775    332             256888887777654433  34456889999999


Q ss_pred             cEEEeeecCC------CeEEEEEccCCCccc--eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCC
Q psy2305         214 ILLFSGARKD------CEIICWDLRNPGCIL--HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP  285 (334)
Q Consensus       214 ~~l~~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  285 (334)
                      +.|+++. ..      +.|.+|++...+ ..  ..+.. ........++++++|++.++. .+ .|.+|+...       
T Consensus       200 ~~lyv~~-~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~-~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g-------  267 (305)
T 3dr2_A          200 QTLYVSQ-TPEQGHGSVEITAFAWRDGA-LHDRRHFAS-VPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDG-------  267 (305)
T ss_dssp             SEEEEEE-CCC---CCCEEEEEEEETTE-EEEEEEEEC-CSSSCCCSEEECTTSCEEECC-SS-EEEEECTTS-------
T ss_pred             CEEEEEe-cCCcCCCCCEEEEEEecCCC-ccCCeEEEE-CCCCCCCeEEECCCCCEEEec-CC-cEEEECCCC-------
Confidence            9888876 44      789999987522 11  11111 012223357789999955544 44 499999854       


Q ss_pred             CccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         286 YEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                            +.+..+..+. .+.+++|  +|++    +.|..++.++.+++
T Consensus       268 ------~~~~~~~~~~-~~~~~~f--~~d~----~~L~it~~~~l~~~  302 (305)
T 3dr2_A          268 ------QLLGHIPTPG-TASNCTF--DQAQ----QRLFITGGPCLWML  302 (305)
T ss_dssp             ------CEEEEEECSS-CCCEEEE--CTTS----CEEEEEETTEEEEE
T ss_pred             ------CEEEEEECCC-ceeEEEE--eCCC----CEEEEEcCCeEEEE
Confidence                  4555555444 5899999  9998    88888888887664

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.62  E-value=1.3e-12  Score=108.40  Aligned_cols=219  Identities=11%  Similarity=-0.016  Sum_probs=141.9

Q ss_pred             ecCC-CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeec
Q psy2305          73 IDGF-TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        73 ~s~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~  151 (334)
                      |+|+ +.++++...++.|..||..+++.. .+.. ..     .+.+++|+++|+++++. +..|.+||..+ +...... 
T Consensus        56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~-----~v~~i~~~~dg~l~v~~-~~gl~~~d~~~-g~~~~~~-  125 (326)
T 2ghs_A           56 FDPASGTAWWFNILERELHELHLASGRKT-VHAL-PF-----MGSALAKISDSKQLIAS-DDGLFLRDTAT-GVLTLHA-  125 (326)
T ss_dssp             EETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SS-----CEEEEEEEETTEEEEEE-TTEEEEEETTT-CCEEEEE-
T ss_pred             EeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-CC-----cceEEEEeCCCeEEEEE-CCCEEEEECCC-CcEEEEe-
Confidence            3666 455666667889999999877653 2322 11     68899999999877765 44599999875 3332210 


Q ss_pred             cccc--ccccceEEEEEcCCCCcEEEEeec------CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC
Q psy2305         152 LKPW--FRKNIVSAIAINPVHPDICALGTY------SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD  223 (334)
Q Consensus       152 ~~~~--~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d  223 (334)
                       ...  .....+.+++++|+|+ ++++...      .+.|..++  +++. ..+..+......++|+|+++.|+.+...+
T Consensus       126 -~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          126 -ELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             -CSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             -eCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence             111  1124688999999998 6554432      25666666  4443 33333334567899999998776665257


Q ss_pred             CeEEEEEcc--CCC-ccc--eeecc-cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee
Q psy2305         224 CEIICWDLR--NPG-CIL--HTFPR-QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF  297 (334)
Q Consensus       224 ~~i~iwd~~--~~~-~~~--~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  297 (334)
                      +.|.+||+.  + + ...  ..+.. .........+.++++|.+.++...++.|.+|+.. +            +.+..+
T Consensus       201 ~~I~~~d~~~~~-Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g------------~~~~~i  266 (326)
T 2ghs_A          201 NRLMRVPLDART-GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G------------NHIARY  266 (326)
T ss_dssp             CEEEEEEBCTTT-CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C------------CEEEEE
T ss_pred             CEEEEEEccccc-CCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C------------CEEEEE
Confidence            899999986  3 3 211  11211 1112345678899999887777667889999984 4            455556


Q ss_pred             cccccccceeeeccC-CCcccceeeEEeee
Q psy2305         298 SAHQDCTNGVRWKHH-KFERDLLVADATCS  326 (334)
Q Consensus       298 ~~~~~~i~~~~~~~s-~~~~~~~~~l~t~~  326 (334)
                      ..+...+.+++|  + |++    +.|+.++
T Consensus       267 ~~~~~~~~~~af--~g~d~----~~L~vt~  290 (326)
T 2ghs_A          267 EVPGKQTTCPAF--IGPDA----SRLLVTS  290 (326)
T ss_dssp             ECSCSBEEEEEE--ESTTS----CEEEEEE
T ss_pred             ECCCCCcEEEEE--ecCCC----CEEEEEe
Confidence            555667899999  8 887    6554443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.62  E-value=3.2e-12  Score=105.98  Aligned_cols=225  Identities=12%  Similarity=0.058  Sum_probs=145.1

Q ss_pred             eeEEEEcCCC-cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           4 EEDVDEAPDG-TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         4 V~~~~~sp~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      ..+.+|+|++ .++++...++.|.+|+..+++..               .+.  ....+.++.|       +++++++++
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~---------------~~~--~~~~v~~i~~-------~~dg~l~v~  106 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT---------------VHA--LPFMGSALAK-------ISDSKQLIA  106 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE---------------EEE--CSSCEEEEEE-------EETTEEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE---------------EEE--CCCcceEEEE-------eCCCeEEEE
Confidence            3578999974 45566667889999999877543               121  2345666666       678887775


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C----CcEEEEEcCCCCCeeeeeccccccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L----SEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      . .+ .|.+||..+++.......... .....+..++++|+|+++++.. +    +...+|.++. ++...     +...
T Consensus       107 ~-~~-gl~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~-g~~~~-----~~~~  177 (326)
T 2ghs_A          107 S-DD-GLFLRDTATGVLTLHAELESD-LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKVTK-----LFAD  177 (326)
T ss_dssp             E-TT-EEEEEETTTCCEEEEECSSTT-CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEEEE-----EEEE
T ss_pred             E-CC-CEEEEECCCCcEEEEeeCCCC-CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC-CcEEE-----eeCC
Confidence            4 44 499999988876443322111 1112688999999999776543 2    2344444442 43221     2223


Q ss_pred             ccceEEEEEcCCCCcEEE-EeecCCeEEEEECC--CC-Cc-----eEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEE
Q psy2305         158 KNIVSAIAINPVHPDICA-LGTYSKIIGLFSDS--DG-RP-----LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIIC  228 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~--~~-~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i  228 (334)
                      ......++|+|+++ .++ +.+.++.|.+||+.  ++ +.     ...+.........++++++|++.++.. .++.|.+
T Consensus       178 ~~~~~~i~~s~dg~-~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~  255 (326)
T 2ghs_A          178 ISIPNSICFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDR  255 (326)
T ss_dssp             ESSEEEEEECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEE
T ss_pred             CcccCCeEEcCCCC-EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEE
Confidence            34567899999998 554 44567899999986  55 32     222333345678899999998777766 6789999


Q ss_pred             EEccCCCccceeecccccCCceEEEEec-CCCceEEeeec
Q psy2305         229 WDLRNPGCILHTFPRQVSTNQRVYFDLT-SCSNYLLSGNT  267 (334)
Q Consensus       229 wd~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~~~~  267 (334)
                      ||..  ++.+..+...  ...+.+++|+ |+++.|++++.
T Consensus       256 ~d~~--g~~~~~i~~~--~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          256 YDTD--GNHIARYEVP--GKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             ECTT--CCEEEEEECS--CSBEEEEEEESTTSCEEEEEEB
T ss_pred             ECCC--CCEEEEEECC--CCCcEEEEEecCCCCEEEEEec
Confidence            9984  5555555433  3457889998 88877655543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.62  E-value=2.7e-13  Score=112.92  Aligned_cols=272  Identities=14%  Similarity=0.034  Sum_probs=171.9

Q ss_pred             EEEcCCCcEEEEeeC-----CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           7 VDEAPDGTCLLTNSN-----DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         7 ~~~sp~~~~l~~~~~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ....|+++.+++...     ++.|.++|..+++..              ..+..+..         |. ++++|||++++
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~--------------~~I~vG~~---------P~-va~spDG~~ly   93 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI--------------GMIDGGFL---------PN-PVVADDGSFIA   93 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE--------------EEEEECSS---------CE-EEECTTSSCEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE--------------EEEECCCC---------Cc-EEECCCCCEEE
Confidence            445789998887764     679999999998876              33433221         22 45588999887


Q ss_pred             Eee----------CCCcEEEEeCCCCeeeEEEcCcccc--ccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCe
Q psy2305          82 CSS----------MYAPIHLWDSVGGEIKATYRPYNQV--DEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRE  146 (334)
Q Consensus        82 ~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~  146 (334)
                      +++          .++.|.+||..+++.+..+......  ........++|+|||++|+++.   ++.|.++|+.+ .+.
T Consensus        94 Van~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t-~~v  172 (386)
T 3sjl_D           94 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG-KAF  172 (386)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT-TEE
T ss_pred             EEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC-CcE
Confidence            775          3678999999999988887542100  0001356899999999988764   58999999997 555


Q ss_pred             eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCceEeeccC----CCCeE-EEEEc-cCCcEEEee
Q psy2305         147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRPLFFLKGH----NGGIT-HLEFS-SNGILLFSG  219 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~----~~~i~-~~~~~-~~~~~l~~~  219 (334)
                      ...+++  .+      +....|.+...+++.+.||.+.+.++.+ ++.......+    ..++. ...|. ++|++++ .
T Consensus       173 v~tI~v--~g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-v  243 (386)
T 3sjl_D          173 KRMLDV--PD------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-P  243 (386)
T ss_dssp             EEEEEC--CS------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-E
T ss_pred             EEEEEC--CC------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-E
Confidence            553221  11      1122344433677778888888888876 5543221111    12221 24564 6786665 4


Q ss_pred             ecCCCeEEEEEccCCC-ccceeec--------ccccCCceEEEEecCCCceEEeeec----------CCcEEEEeCCCCC
Q psy2305         220 ARKDCEIICWDLRNPG-CILHTFP--------RQVSTNQRVYFDLTSCSNYLLSGNT----------NGDLSIWNVNTSN  280 (334)
Q Consensus       220 ~~~d~~i~iwd~~~~~-~~~~~~~--------~~~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~  280 (334)
                      + .+|.+++.|+.... .....+.        ..........++++++++.++....          .+.|.++|+.+. 
T Consensus       244 s-~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~-  321 (386)
T 3sjl_D          244 T-YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-  321 (386)
T ss_dssp             B-TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC-
T ss_pred             e-CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC-
Confidence            5 58999999997522 1222221        0000111123566899988877643          247999999998 


Q ss_pred             CCCCCCccccccccceecccccccceeeeccCCCccccee-eEEee-ecceeee
Q psy2305         281 LPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV-ADATC-SGQITNV  332 (334)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~-~l~t~-~~d~~i~  332 (334)
                                 +.+..+.. ...+.++++  +||+    + +|+++ ..++.+.
T Consensus       322 -----------kv~~~i~v-g~~~~~lav--s~D~----~~~ly~tn~~~~~Vs  357 (386)
T 3sjl_D          322 -----------ERLAKFEM-GHEIDSINV--SQDE----KPLLYALSTGDKTLY  357 (386)
T ss_dssp             -----------CEEEEEEE-EEEECEEEE--CSSS----SCEEEEEETTTTEEE
T ss_pred             -----------eEEEEEEC-CCCcceEEE--CCCC----CeEEEEEcCCCCeEE
Confidence                       56666653 236889999  9998    6 66654 4466654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=2.6e-12  Score=104.96  Aligned_cols=227  Identities=12%  Similarity=0.019  Sum_probs=153.3

Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeee
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVS  149 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~  149 (334)
                      ++++++++++++...++.|.+||.. ++... +......   ..+..+++.++++++++.. ++.|..||..  ++....
T Consensus        25 i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~~~~   97 (300)
T 2qc5_A           25 ITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPD---AKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGFTEY   97 (300)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTT---CCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEE
T ss_pred             eeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCC---CcceeEEECCCCCEEEEecCCCeEEEECCC--CCeEEe
Confidence            4447899888877778899999987 55443 3221111   2688999999998777765 7889999977  333221


Q ss_pred             ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE-eeccCCCCeEEEEEccCCcEEEeeecCCCeEEE
Q psy2305         150 RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF-FLKGHNGGITHLEFSSNGILLFSGARKDCEIIC  228 (334)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~i  228 (334)
                         ........+.++++.+++. ++++...++.|..+|.. ++... .+......+..+++.++|+.+++.. .++.|..
T Consensus        98 ---~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~  171 (300)
T 2qc5_A           98 ---PLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTEN-QNNSIGR  171 (300)
T ss_dssp             ---ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEE
T ss_pred             ---cCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEec-CCCeEEE
Confidence               2222346788999999998 77766668899999987 55432 2333456789999999999666555 5788999


Q ss_pred             EEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceee
Q psy2305         229 WDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVR  308 (334)
Q Consensus       229 wd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  308 (334)
                      +|..  +... .+........+..++++++|+++++....+.|.+|+. ++.           .....+..+...+.+++
T Consensus       172 ~~~~--g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~-----------~~~~~~~~~~~~~~~i~  236 (300)
T 2qc5_A          172 ITNT--GKLE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE-----------ISEYDIPTPNARPHAIT  236 (300)
T ss_dssp             ECTT--CCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-----------EEEEECSSTTCCEEEEE
T ss_pred             ECCC--CcEE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc-----------EEEEECCCCCCCceEEE
Confidence            9883  4332 2322222345778889999987777666778999998 431           11112223345678899


Q ss_pred             eccCCCcccceeeEEeeecceee
Q psy2305         309 WKHHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       309 ~~~s~~~~~~~~~l~t~~~d~~i  331 (334)
                      +  ++++    ++.++...++.|
T Consensus       237 ~--d~~g----~l~v~~~~~~~i  253 (300)
T 2qc5_A          237 A--GKNS----EIWFTEWGANQI  253 (300)
T ss_dssp             E--CSTT----CEEEEETTTTEE
T ss_pred             E--CCCC----CEEEeccCCCeE
Confidence            9  9999    766666554444

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.60  E-value=4.3e-14  Score=118.20  Aligned_cols=176  Identities=11%  Similarity=-0.018  Sum_probs=131.4

Q ss_pred             ceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCC-------eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEE
Q psy2305         114 HAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGR-------ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLF  186 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~  186 (334)
                      .+..+++++...++++|+...+.+|++....+       ...  +.....+.. |+.++|  ++. +|+++ .++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~--~~~~~~lp~-V~~l~f--d~~-~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLT--FKWEKEIPD-VIFVCF--HGD-QVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCC--CSEEEECTT-EEEEEE--ETT-EEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhcccccccc--ceEEeeCCC-eeEEEE--CCC-EEEEE-cCCcEEEE
Confidence            68899999999999999866778898763110       011  001233556 999999  887 88888 88999999


Q ss_pred             ECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee
Q psy2305         187 SDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN  266 (334)
Q Consensus       187 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  266 (334)
                      |+++.........|...+.++.+.+..  +++++ .||.+.+||+.. +....      ....+.+++|||+|  ++.|.
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~-~dG~L~v~dl~~-~~~~~------~~~~Vs~v~WSpkG--~~vg~  179 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILN-SVNDLSALDLRT-KSTKQ------LAQNVTSFDVTNSQ--LAVLL  179 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEE-TTSEEEEEETTT-CCEEE------EEESEEEEEECSSE--EEEEE
T ss_pred             EchhhhccCccceeecceeeEEecCCC--EEEEE-CCCCEEEEEccC-Ccccc------ccCCceEEEEcCCc--eEEEE
Confidence            998877666677788889888877653  77888 899999999986 44322      13468899999999  67788


Q ss_pred             cCCcEEEEeCCCCCCCCCCCcccccccccee------c---ccccccceeeeccCCCcccceeeEEe
Q psy2305         267 TNGDLSIWNVNTSNLPSSPYEESVQEPLYKF------S---AHQDCTNGVRWKHHKFERDLLVADAT  324 (334)
Q Consensus       267 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~i~~~~~~~s~~~~~~~~~l~t  324 (334)
                      .||++++|+......          .....+      .   +|...|.++.|  .+++    .+|++
T Consensus       180 ~dg~i~~~~~~~~~~----------~~k~~I~~Pp~~~~~~~~~~~V~sI~w--l~~~----~flv~  230 (388)
T 1xip_A          180 KDRSFQSFAWRNGEM----------EKQFEFSLPSELEELPVEEYSPLSVTI--LSPQ----DFLAV  230 (388)
T ss_dssp             TTSCEEEEEEETTEE----------EEEEEECCCHHHHTSCTTTSEEEEEEE--SSSS----EEEEE
T ss_pred             cCCcEEEEcCCCccc----------cccceecCCcccccccCCCeeEEEEEE--ecCC----eEEEE
Confidence            999999998877521          002223      2   36678999999  9999    88876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.60  E-value=3.8e-13  Score=114.06  Aligned_cols=269  Identities=13%  Similarity=0.002  Sum_probs=172.6

Q ss_pred             CCCcEEEEeeCC-----CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee-
Q psy2305          11 PDGTCLLTNSND-----NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS-   84 (334)
Q Consensus        11 p~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~-   84 (334)
                      |+++++++....     +.|.++|..+.+..              ..+..+.         .| .++++||+++|+++. 
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv--------------~~I~vG~---------~P-gia~SpDgk~lyVan~  137 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL--------------GMTDGGF---------LP-HPVAAEDGSFFAQAST  137 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEE--------------EEEEECS---------SC-EEEECTTSSCEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEE--------------EEEECCC---------CC-ceEECCCCCEEEEEec
Confidence            467767666542     69999999998876              3333322         23 455689999888876 


Q ss_pred             ---------CCCcEEEEeCCCCeeeEEEcCc--cccccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeeeee
Q psy2305          85 ---------MYAPIHLWDSVGGEIKATYRPY--NQVDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        85 ---------~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~  150 (334)
                               .++.|.++|..+++.+..+...  ...........+.|+|||++|+++.   ++.|.+.|+.+ .+....+
T Consensus       138 ~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t-~kvv~~I  216 (426)
T 3c75_H          138 VFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG-KTFDRML  216 (426)
T ss_dssp             EEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT-TEEEEEE
T ss_pred             cccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC-CeEEEEE
Confidence                     3678999999999988877542  1000001356889999999999764   47899999997 5554432


Q ss_pred             cccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe----eccCCCCe-EEEEEccCCcEEEeeecCCCe
Q psy2305         151 NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF----LKGHNGGI-THLEFSSNGILLFSGARKDCE  225 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~i-~~~~~~~~~~~l~~~~~~d~~  225 (334)
                      ++  .+      +....|++...+++.+.||.+.+.+..+++....    +.....++ ..+.|.+++..++..+ ..+.
T Consensus       217 ~v--~g------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~  287 (426)
T 3c75_H          217 DV--PD------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT-YTGK  287 (426)
T ss_dssp             EC--CS------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB-TTSE
T ss_pred             Ec--CC------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe-CCCc
Confidence            21  11      1234455543666677788888888855554422    21111121 2356799998888878 7899


Q ss_pred             EEEEEccCCCc-cceeecc---c-----ccCCceEEEEecCCCceEEeeec----------CCcEEEEeCCCCCCCCCCC
Q psy2305         226 IICWDLRNPGC-ILHTFPR---Q-----VSTNQRVYFDLTSCSNYLLSGNT----------NGDLSIWNVNTSNLPSSPY  286 (334)
Q Consensus       226 i~iwd~~~~~~-~~~~~~~---~-----~~~~~~~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~  286 (334)
                      +.+.|...... ....+..   .     ........++++|+++.+++...          ++.|.++|+.+.       
T Consensus       288 V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~-------  360 (426)
T 3c75_H          288 IFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG-------  360 (426)
T ss_dssp             EEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC-------
T ss_pred             EEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC-------
Confidence            99999864211 1111110   0     00111112578999887776642          357999999998       


Q ss_pred             ccccccccceecccccccceeeeccCCCccccee-eEEeee-cceeee
Q psy2305         287 EESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV-ADATCS-GQITNV  332 (334)
Q Consensus       287 ~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~-~l~t~~-~d~~i~  332 (334)
                           +.+..+... .....+.|  +||+    + +|+++. .++.|.
T Consensus       361 -----kvv~~I~vg-~~P~gia~--spDg----~~~lyv~n~~s~~Vs  396 (426)
T 3c75_H          361 -----ERINKIELG-HEIDSINV--SQDA----EPLLYALSAGTQTLH  396 (426)
T ss_dssp             -----CEEEEEEEE-EEECEEEE--CCSS----SCEEEEEETTTTEEE
T ss_pred             -----eEEEEEECC-CCcCeEEE--ccCC----CEEEEEEcCCCCeEE
Confidence                 666666532 35789999  9999    8 888877 466664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.58  E-value=5.6e-13  Score=113.03  Aligned_cols=244  Identities=10%  Similarity=0.066  Sum_probs=154.4

Q ss_pred             EEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305           6 DVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~   75 (334)
                      .++++|||++|+++.          .++.|.++|..+.+...              .+........ ..--.|..+.++|
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~--------------~I~v~g~~r~-~~g~~P~~~~~sp  186 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA--------------DIELPDAPRF-LVGTYQWMNALTP  186 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE--------------EEEETTCCCC-CBSCCGGGSEECT
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE--------------EEECCCcccc-ccCCCcceEEEcC
Confidence            789999999888875          36789999999988762              2221100000 0001356788899


Q ss_pred             CCcEEEEeeC--CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCC-CEEEEee-CCcEEEEEcCCCCCeeeeec
Q psy2305          76 FTSYFLCSSM--YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDG-NKIYAGF-LSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        76 ~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~  151 (334)
                      ||++++++..  ++.|.+.|+.+++.+..+....         +....|++ +.+++.+ ||.+.+.+... ++......
T Consensus       187 DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---------~~~~~p~g~~~~v~~~~dG~~~~V~~~~-~~v~~~~~  256 (426)
T 3c75_H          187 DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---------CYHIFPASPTVFYMNCRDGSLARVDFAD-GETKVTNT  256 (426)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---------EEEEEEEETTEEEEEETTSSEEEEECCT-TCCEEEEC
T ss_pred             CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---------ceeeccCCCcEEEEEcCCCCEEEEECCC-CcEEEEee
Confidence            9999998864  5789999999999988876522         12233333 2223323 66666666632 33221100


Q ss_pred             ccccccccc-eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce--Eeecc----------CCCCeEEEEEccCCcEEEe
Q psy2305         152 LKPWFRKNI-VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL--FFLKG----------HNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       152 ~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~----------~~~~i~~~~~~~~~~~l~~  218 (334)
                      ..+.....+ ...+.+.+++. .++.....+.+.+.|+......  ..+.-          .......++++|+++.+++
T Consensus       257 ~~~~v~~~p~~~~~~~~~dg~-~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV  335 (426)
T 3c75_H          257 EVFHTEDELLINHPAFSLRSG-RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL  335 (426)
T ss_dssp             CCCSCTTSCBCSCCEECTTTC-EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred             eeeccCCCceeeEeeecCCCC-EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence            001111111 12356789988 6666667899999998654321  11110          0112223789999988877


Q ss_pred             eec---------CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCc-eEEeee-cCCcEEEEeCCCC
Q psy2305         219 GAR---------KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN-YLLSGN-TNGDLSIWNVNTS  279 (334)
Q Consensus       219 ~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~  279 (334)
                      ...         .++.|.+.|..+ .+.+.++..   ......+.|+|||+ ++++.. .++.|.++|+.+.
T Consensus       336 a~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          336 LVDQRDEWKHKAASRFVVVLNAET-GERINKIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             EecccccccccCCCCEEEEEECCC-CeEEEEEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence            641         135799999998 676777653   22466789999999 888877 5899999999998

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.58  E-value=8e-14  Score=116.57  Aligned_cols=182  Identities=9%  Similarity=-0.006  Sum_probs=126.1

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .++.+++++...++++|+.++ +.+|++...+...  ......   ........... |+.++|         ++++|++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~--~~~~~~---~~~~~~~~lp~-V~~l~f---------d~~~L~v  102 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHI--TSDSTP---LTFKWEKEIPD-VIFVCF---------HGDQVLV  102 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHH--HSSSCC---CCCSEEEECTT-EEEEEE---------ETTEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhh--cccccc---ccceEEeeCCC-eeEEEE---------CCCEEEE
Confidence            578899999999999999875 7779976443100  000000   11112222334 766655         7888998


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-eCCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      + .++.|++||+.+.........+..     ++.++.+.+..  ++++ .||.+.+||+.. +....        +...|
T Consensus       103 ~-~~~~l~v~dv~sl~~~~~~~~~~~-----~v~~i~~~~p~--~av~~~dG~L~v~dl~~-~~~~~--------~~~~V  165 (388)
T 1xip_A          103 S-TRNALYSLDLEELSEFRTVTSFEK-----PVFQLKNVNNT--LVILNSVNDLSALDLRT-KSTKQ--------LAQNV  165 (388)
T ss_dssp             E-ESSEEEEEESSSTTCEEEEEECSS-----CEEEEEECSSE--EEEEETTSEEEEEETTT-CCEEE--------EEESE
T ss_pred             E-cCCcEEEEEchhhhccCccceeec-----ceeeEEecCCC--EEEEECCCCEEEEEccC-Ccccc--------ccCCc
Confidence            8 789999999876654444443332     67777777653  5555 499999999985 33221        34689


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCc--eEee------c---cCCCCeEEEEEccCCcEEEeee
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRP--LFFL------K---GHNGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~------~---~~~~~i~~~~~~~~~~~l~~~~  220 (334)
                      +|++|+|+|   ++.|..||++++|+...++.  ..++      .   +|...|.++.|.+++.++++-.
T Consensus       166 s~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          166 TSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             eEEEEcCCc---eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            999999998   45688899999999876664  4455      2   3678899999999999888743

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.55  E-value=4.1e-12  Score=104.33  Aligned_cols=230  Identities=13%  Similarity=0.076  Sum_probs=145.0

Q ss_pred             ceeEEEEcCCCc-EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGT-CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ......|+|+|+ ++++...++.|..|+.. ++..               .+.. ....+..+.+       +++|++++
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~---------------~~~~-~~~~~~gl~~-------d~dG~l~v  101 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD---------------VLLD-ATAFTNGNAV-------DAQQRLVH  101 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE---------------EEEE-SCSCEEEEEE-------CTTSCEEE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE---------------EEeC-CCCccceeeE-------CCCCCEEE
Confidence            356789999998 55666678999999874 4332               2222 2344555555       78999777


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEE----ee--------------CCcEEEEEcCCC
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA----GF--------------LSEVKIFSTDRP  143 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~--------------d~~i~i~d~~~~  143 (334)
                      +...++.|.+|+.. ++.......... .....+..+++.|+|+++++    |.              .+.|..+|..+ 
T Consensus       102 ~~~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-  178 (305)
T 3dr2_A          102 CEHGRRAITRSDAD-GQAHLLVGRYAG-KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-  178 (305)
T ss_dssp             EETTTTEEEEECTT-SCEEEEECEETT-EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-
T ss_pred             EECCCCEEEEECCC-CCEEEEEeccCC-CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC-
Confidence            66666789999975 554332221111 11115678999999998886    32              14566666643 


Q ss_pred             CCeeeeecccccccccceEEEEEcCCCCcEEEEeecC------CeEEEEECCCCCce--Eee-ccCCCCeEEEEEccCCc
Q psy2305         144 GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS------KIIGLFSDSDGRPL--FFL-KGHNGGITHLEFSSNGI  214 (334)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~--~~~-~~~~~~i~~~~~~~~~~  214 (334)
                      ++...     .. .......++|+|+++ .|+.+...      +.|.+|++..+...  ..+ ....+....++++++|+
T Consensus       179 g~~~~-----~~-~~~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~  251 (305)
T 3dr2_A          179 SPLQR-----MA-DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW  251 (305)
T ss_dssp             CCCEE-----EE-EESSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred             CcEEE-----Ee-cCCCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC
Confidence            33222     12 334567899999998 77666554      78999998754311  111 11233456789999998


Q ss_pred             EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305         215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN  275 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  275 (334)
                       |.+++ .++ |.+|+..  ++.+..+...   ..+..++|+|+++.|+.++.++ +..++
T Consensus       252 -lwv~~-~~g-v~~~~~~--g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          252 -LWSSS-GTG-VCVFDSD--GQLLGHIPTP---GTASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             -EEECC-SSE-EEEECTT--SCEEEEEECS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             -EEEec-CCc-EEEECCC--CCEEEEEECC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence             44555 354 8899885  5556655543   2466788999998888777654 44333

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=1.3e-12  Score=109.07  Aligned_cols=242  Identities=8%  Similarity=0.043  Sum_probs=147.2

Q ss_pred             cccceecCCCcEEEEee--CCCcEEEEeCCCCeeeEEEcCc--cccccccceeEEEEcCCCCEEEEee------CCcEEE
Q psy2305          68 PKTSSIDGFTSYFLCSS--MYAPIHLWDSVGGEIKATYRPY--NQVDEVTHAYSLAFSLDGNKIYAGF------LSEVKI  137 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~i  137 (334)
                      |..++++++|+++++..  .++.++||.+.+++. ..+...  ........+..++++++++++++..      +..|.+
T Consensus        19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~   97 (343)
T 2qe8_A           19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVA   97 (343)
T ss_dssp             EEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEE
T ss_pred             cceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEE
Confidence            34456688999888863  234245555445543 333211  1111223789999999988666542      478999


Q ss_pred             EEcCCCCCeeeeecc--cccccccceEEEEEcCCCCcEEEEee---cCCeEEEEECCCCCceEeeccCC-----------
Q psy2305         138 FSTDRPGRECVSRNL--KPWFRKNIVSAIAINPVHPDICALGT---YSKIIGLFSDSDGRPLFFLKGHN-----------  201 (334)
Q Consensus       138 ~d~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~-----------  201 (334)
                      ||+.+ ++......+  ....+...+..+++++++...+++..   .++.|.+||+.+++..+.+.+|.           
T Consensus        98 ~d~~t-g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~  176 (343)
T 2qe8_A           98 WDTLN-NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI  176 (343)
T ss_dssp             EETTT-TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred             EECCC-CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence            99986 554432211  01122345689999987552445554   67899999998877666554321           


Q ss_pred             ------------------CCeEEEEEccCCcEEEeeecCCC-eEEEEEccC--CCc-----cceeecccccCCceEEEEe
Q psy2305         202 ------------------GGITHLEFSSNGILLFSGARKDC-EIICWDLRN--PGC-----ILHTFPRQVSTNQRVYFDL  255 (334)
Q Consensus       202 ------------------~~i~~~~~~~~~~~l~~~~~~d~-~i~iwd~~~--~~~-----~~~~~~~~~~~~~~~~~~~  255 (334)
                                        ..+..++|+|+|+.|+++. .++ .+..++...  .+.     ....+...........+++
T Consensus       177 ~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~  255 (343)
T 2qe8_A          177 DGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP-MHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI  255 (343)
T ss_dssp             TTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE-SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred             CCEEEEeccCCCceeceecccceeEeccCCCEEEEEe-CCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence                              2358899999999998887 454 555555431  010     0000110001123345788


Q ss_pred             cCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceec-ccccccceeeeccCCCcccceeeEEeeeccee
Q psy2305         256 TSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS-AHQDCTNGVRWKHHKFERDLLVADATCSGQIT  330 (334)
Q Consensus       256 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~  330 (334)
                      +++|.++++...++.|.+||..++            +...... .+...+.+++|  .+++    .++++.+..+.
T Consensus       256 d~~G~l~va~~~~~~V~~~d~~~G------------~~~~~~~~~~~~~p~~va~--~~~g----~l~v~~~~~~~  313 (343)
T 2qe8_A          256 DKDHNIYVGDLAHSAIGVITSADR------------AYKLLVTDEKLSWTDSFNF--GSDG----YLYFDCNQLHH  313 (343)
T ss_dssp             CTTCCEEEEEGGGTEEEEEETTTT------------EEEEEEECGGGSCEEEEEE--CTTS----CEEEEECCGGG
T ss_pred             CCCCCEEEEccCCCeEEEEECCCC------------CEEEEEECCceecCCeeEE--CCCC----cEEEEeCcccc
Confidence            999999998888999999998555            2211111 12345789999  9999    88777765543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.52  E-value=4.1e-12  Score=116.08  Aligned_cols=221  Identities=12%  Similarity=0.076  Sum_probs=138.3

Q ss_pred             ecCCCcEEEEee-----CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC-------------
Q psy2305          73 IDGFTSYFLCSS-----MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS-------------  133 (334)
Q Consensus        73 ~s~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~-------------  133 (334)
                      |||||++||.+.     ....|++||+.+++.+..... ..     ....++|+ ||+.|+.+. +.             
T Consensus       136 ~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~-----k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~  208 (693)
T 3iuj_A          136 FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK-DV-----KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQH  208 (693)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE-EE-----ESCCCEEE-TTTEEEEEESSCCC-------CCCC
T ss_pred             ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC-Cc-----eeccEEEe-CCCEEEEEEecCcccccccccCCCc
Confidence            488999988542     235799999999986543111 11     13578999 999888665 53             


Q ss_pred             cEEEEEcCCCCCeeeeecccccc-cccceEEEEEcCCCCcEEEEeec----CCeEEEEECCCCC-ceEeeccCCCCeEEE
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWF-RKNIVSAIAINPVHPDICALGTY----SKIIGLFSDSDGR-PLFFLKGHNGGITHL  207 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~i~~~  207 (334)
                      .|++|++.+....-.... .... +......+.|+|+|+ +|+....    ...|+++|+.++. ....+..+.......
T Consensus       209 ~v~~~~lgt~~~~~~~v~-~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~  286 (693)
T 3iuj_A          209 KVYFHRLGTAQEDDRLVF-GAIPAQHHRYVGATVTEDDR-FLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL  286 (693)
T ss_dssp             EEEEEETTSCGGGCEEEE-SCSGGGCCSEEEEEECTTSC-EEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE
T ss_pred             EEEEEECCCCcccceEEE-ecCCCCCeEEEEEEEcCCCC-EEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE
Confidence            389999886332111100 2233 455678899999999 6644332    2589999997764 455666666665555


Q ss_pred             EEccCCcEEEeeecCC---CeEEEEEccCCCc-cceeecccccCCceEEEEecCCCceEEeeec-CC--cEEEEeCCCCC
Q psy2305         208 EFSSNGILLFSGARKD---CEIICWDLRNPGC-ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT-NG--DLSIWNVNTSN  280 (334)
Q Consensus       208 ~~~~~~~~l~~~~~~d---~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~  280 (334)
                       ++++|..|+..++.+   +.|..+|+..... ....+..+..  .+.  .|++++++|+.... ++  .|++|++..+ 
T Consensus       287 -~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-  360 (693)
T 3iuj_A          287 -VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ--QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-  360 (693)
T ss_dssp             -EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS--SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred             -EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC--CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence             667776665554233   5788999886321 1234444422  233  78899988876655 43  6889998854 


Q ss_pred             CCCCCCccccccccceec-ccccccceeeeccCCCcccceeeEEeee
Q psy2305         281 LPSSPYEESVQEPLYKFS-AHQDCTNGVRWKHHKFERDLLVADATCS  326 (334)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~s~~~~~~~~~l~t~~  326 (334)
                                  ....+. ...+.+..+.+  +|++    ..|+...
T Consensus       361 ------------~~~~l~~p~~~~~~~~~~--~~d~----~~l~~~~  389 (693)
T 3iuj_A          361 ------------RVREVALPGLGSVSGFNG--KHDD----PALYFGF  389 (693)
T ss_dssp             ------------EEEEECCSSSSEEEECCC--CTTC----SCEEEEE
T ss_pred             ------------eeEEeecCCCceEEeeec--CCCC----CEEEEEe
Confidence                        222332 23446777888  8887    6555443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.52  E-value=3.7e-11  Score=100.90  Aligned_cols=235  Identities=12%  Similarity=0.084  Sum_probs=145.3

Q ss_pred             CCCcEEEE-eeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeE---EEEEEecccceecCCCcEEEEeeCC
Q psy2305          11 PDGTCLLT-NSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGII---YDYVWYPKTSSIDGFTSYFLCSSMY   86 (334)
Q Consensus        11 p~~~~l~~-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~s~~~~~l~~~~~d   86 (334)
                      +++++|++ +..+++|.++|+.+....          +.+.++++.   ..+   .... .|..+..+|+| +++++..+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~----------p~~~k~ie~---~~~~~~~g~s-~Ph~~~~~pdG-i~Vs~~g~  157 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPRE----------PKIIKVIEP---EEVKKVSGYS-RLHTVHCGPDA-IYISALGN  157 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTS----------CEEEEEECH---HHHHHHHCEE-EEEEEEECSSC-EEEEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCC----------ceeeeeech---hhcccccCCC-cccceeECCCe-EEEEcCCC
Confidence            77887765 457889999999754221          001122210   000   0011 13334457899 66665444


Q ss_pred             ------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--------------------CCcEEEEEc
Q psy2305          87 ------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--------------------LSEVKIFST  140 (334)
Q Consensus        87 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------------d~~i~i~d~  140 (334)
                            +.|.++|.++++.+..+.......  ..-+.+.|+|+++.++++.                    +.+|.+||+
T Consensus       158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~--~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~  235 (462)
T 2ece_A          158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQ--YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL  235 (462)
T ss_dssp             TTSCSCCEEEEECTTTCCEEEECCSBCTTC--CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred             cCCCCCCeEEEEECCCCeEEEEEccCCCCc--cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence                  689999999999998887432211  1345688999999988773                    689999999


Q ss_pred             CCCCCeeeeecccccccccceEEEEE--cCCCCcEEEEee------cCCeEEEEECCCCCc--eEe--ecc---------
Q psy2305         141 DRPGRECVSRNLKPWFRKNIVSAIAI--NPVHPDICALGT------YSKIIGLFSDSDGRP--LFF--LKG---------  199 (334)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~------~dg~i~i~d~~~~~~--~~~--~~~---------  199 (334)
                      .+ ++....+.  ..........+.|  +|+++ ++.+++      .+++|.+|....++.  .+.  +..         
T Consensus       236 ~~-~k~~~tI~--vg~~g~~P~~i~f~~~Pdg~-~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~  311 (462)
T 2ece_A          236 RK-RKRIHSLT--LGEENRMALELRPLHDPTKL-MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE  311 (462)
T ss_dssp             TT-TEEEEEEE--SCTTEEEEEEEEECSSTTCC-EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred             CC-CcEeeEEe--cCCCCCccceeEeeECCCCC-EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence            96 54444321  1111233445656  99999 655555      567887766544321  111  110         


Q ss_pred             -------CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc--cceeecccc------------cCCceEEEEecCC
Q psy2305         200 -------HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC--ILHTFPRQV------------STNQRVYFDLTSC  258 (334)
Q Consensus       200 -------~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~------------~~~~~~~~~~s~~  258 (334)
                             -......+.++|||++|+++.+..+.|.+||+...+.  .+..+....            .......++++||
T Consensus       312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD  391 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD  391 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred             cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence                   0234678999999999999998889999999964332  222222110            0012456889999


Q ss_pred             CceEEeee
Q psy2305         259 SNYLLSGN  266 (334)
Q Consensus       259 ~~~l~~~~  266 (334)
                      |++|+++.
T Consensus       392 Gk~LyVaN  399 (462)
T 2ece_A          392 GRRVYVTN  399 (462)
T ss_dssp             SSEEEEEC
T ss_pred             CCEEEEEc
Confidence            99999887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=7.9e-12  Score=104.36  Aligned_cols=252  Identities=10%  Similarity=0.016  Sum_probs=148.5

Q ss_pred             ceeEEEEcCCCcEEEEee--CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           3 IEEDVDEAPDGTCLLTNS--NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      .+..++++|+|+++++..  .++.++||.+.+++.. .+  +...     .. ...+-..+.+++       ++++++++
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~--p~~~-----~~-~~~~~~~p~gv~-------~d~~g~L~   81 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PF--PPQS-----GN-AIITFDTVLGIK-------SDGNGIVW   81 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ES--CCCC-----SS-CCCCCSCEEEEE-------ECSSSEEE
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cC--CCcc-----cC-cccceeEeeEEE-------EcCCCcEE
Confidence            467899999999888853  2343555555444322 01  0000     00 001223445544       47888876


Q ss_pred             EEeeC-----CCcEEEEeCCCCeeeEEEcCccc-cccccceeEEEEcCCCCEEE-Ee----eCCcEEEEEcCCCCCeeee
Q psy2305          81 LCSSM-----YAPIHLWDSVGGEIKATYRPYNQ-VDEVTHAYSLAFSLDGNKIY-AG----FLSEVKIFSTDRPGRECVS  149 (334)
Q Consensus        81 ~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~-~~----~d~~i~i~d~~~~~~~~~~  149 (334)
                      ++-..     ++.|.+||+.+++.+..+..... ......+..+++++++..++ +.    .++.|.+||+.+ ++....
T Consensus        82 v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~  160 (343)
T 2qe8_A           82 MLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARV  160 (343)
T ss_dssp             EEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEE
T ss_pred             EEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEE
Confidence            65433     57899999999987776654211 11112568999998755554 32    357899999875 433321


Q ss_pred             ecc-----------cccc--------------cccceEEEEEcCCCCcEEEEeecCC-eEEEEECC---CCC-----ceE
Q psy2305         150 RNL-----------KPWF--------------RKNIVSAIAINPVHPDICALGTYSK-IIGLFSDS---DGR-----PLF  195 (334)
Q Consensus       150 ~~~-----------~~~~--------------~~~~v~~~~~~~~~~~~l~~~~~dg-~i~i~d~~---~~~-----~~~  195 (334)
                      ...           ...+              ....+..++|+|+++ .|+.+...+ .+..++..   .+.     ...
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  239 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGS  239 (343)
T ss_dssp             CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred             ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence            100           0000              012368899999998 777766554 66666542   111     000


Q ss_pred             --eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEE
Q psy2305         196 --FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSI  273 (334)
Q Consensus       196 --~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~i  273 (334)
                        ...++.+....++++++|.++++.. .++.|.+||... ++. ..+...........++|.++++++++.+..+.+.+
T Consensus       240 ~~~~~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~-G~~-~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~  316 (343)
T 2qe8_A          240 KIERYSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSAD-RAY-KLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAP  316 (343)
T ss_dssp             TCEEEEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTT-TEE-EEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGG
T ss_pred             ceEecccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCC-CCE-EEEEECCceecCCeeEECCCCcEEEEeCccccccc
Confidence              1113344556799999998888877 789999999843 442 22222212345778999999988887765555544


Q ss_pred             Ee
Q psy2305         274 WN  275 (334)
Q Consensus       274 wd  275 (334)
                      |.
T Consensus       317 f~  318 (343)
T 2qe8_A          317 LN  318 (343)
T ss_dssp             GB
T ss_pred             cc
Confidence            44

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.47  E-value=3.7e-12  Score=106.23  Aligned_cols=253  Identities=7%  Similarity=-0.076  Sum_probs=153.8

Q ss_pred             EEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305           6 DVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~   75 (334)
                      .+.++|||++++++.          .++.|.+||..+.+...              .+..+...... .--.|..++++|
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~--------------~I~v~~~~~~~-~g~~P~~ia~Sp  133 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA--------------DIELPDAPRFS-VGPRVHIIGNCA  133 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE--------------EEEETTSCSCC-BSCCTTSEEECT
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE--------------EEECCCccccc-cCCCcceEEEcC
Confidence            689999999998886          36899999999998762              33221000000 001356778899


Q ss_pred             CCcEEEEeeC--CCcEEE--EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCC----CCC
Q psy2305          76 FTSYFLCSSM--YAPIHL--WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDR----PGR  145 (334)
Q Consensus        76 ~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~----~~~  145 (334)
                      ||++++++..  +..+.+  +|+.+   +..+....      .   ..+.|+++..+ +.+ |+.+.+.|+..    .++
T Consensus       134 DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~------~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~  201 (368)
T 1mda_H          134 SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS------C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS------C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC------c---eEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence            9999998864  356888  89876   44443211      1   22345554333 233 78888888764    122


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC--ceEeecc-------C---CCCeEEEEEccCC
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR--PLFFLKG-------H---NGGITHLEFSSNG  213 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~-------~---~~~i~~~~~~~~~  213 (334)
                      ..........-...+.   . .+++. .++..+. +.+.+.|.....  .+..+.-       +   ......++++|++
T Consensus       202 v~~~~t~~i~vg~~P~---~-~~~~~-~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg  275 (368)
T 1mda_H          202 VGAQCTGAQNCSSQAA---Q-ANYPG-MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT  275 (368)
T ss_dssp             CCCCSCTTSCBCSCCE---E-ETTTT-EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT
T ss_pred             EEEEeeeeeeCCCCcc---c-cccCC-EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC
Confidence            1110000111122333   3 56666 5555556 999999986532  2222210       0   1111226899999


Q ss_pred             cEEEeeecC-C--------CeEEEEEccCCCccceeecccccCCceEEEEecCCCce-EEeee-cCCcEEEEeCCCCCCC
Q psy2305         214 ILLFSGARK-D--------CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNY-LLSGN-TNGDLSIWNVNTSNLP  282 (334)
Q Consensus       214 ~~l~~~~~~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~-~dg~i~iwd~~~~~~~  282 (334)
                      +.++++. . .        +.+.++|+.+ .+.+..+...   .....+.|+|||++ +++.. .++.|.++|+.+.   
T Consensus       276 ~~lyV~~-~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~---  347 (368)
T 1mda_H          276 DGIMILT-VEHSRSCLAAAENTSSVTASV-GQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD---  347 (368)
T ss_dssp             TEEEEEE-EECSSCTTSCEEEEEEEESSS-CCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC---
T ss_pred             CEEEEEe-ccccCcccccCCCEEEEECCC-CeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCC---
Confidence            9888765 3 2        3566999998 6666666532   24667899999985 45555 4899999999998   


Q ss_pred             CCCCccccccccceecccccccceeee
Q psy2305         283 SSPYEESVQEPLYKFSAHQDCTNGVRW  309 (334)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~i~~~~~  309 (334)
                               +.+..+.... ....+++
T Consensus       348 ---------kvv~~I~vg~-~P~~i~~  364 (368)
T 1mda_H          348 ---------QDQSSVELDK-GPESLSV  364 (368)
T ss_dssp             ---------EEEEECCCCS-CCCEEEC
T ss_pred             ---------cEEEEEECCC-CCCEEEe
Confidence                     6666666443 3456666

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.46  E-value=2e-10  Score=96.48  Aligned_cols=231  Identities=9%  Similarity=0.021  Sum_probs=148.2

Q ss_pred             CCCcEEEE-eeCCCcEEEEeCCCC----eeeEEEcCcccc--ccccceeEEEEcCCCCEEEEee-C------CcEEEEEc
Q psy2305          75 GFTSYFLC-SSMYAPIHLWDSVGG----EIKATYRPYNQV--DEVTHAYSLAFSLDGNKIYAGF-L------SEVKIFST  140 (334)
Q Consensus        75 ~~~~~l~~-~~~d~~i~iwd~~~~----~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-d------~~i~i~d~  140 (334)
                      +++++|++ +..++.|.++|+.+.    +..+.++...-.  ........+..+|+| .++++. +      +.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            67777655 567889999999765    666666311100  000145678889999 666543 3      78999999


Q ss_pred             CCCCCeeeeecccccccc-cceEEEEEcCCCCcEEEEee-------------------cCCeEEEEECCCCCceEeeccC
Q psy2305         141 DRPGRECVSRNLKPWFRK-NIVSAIAINPVHPDICALGT-------------------YSKIIGLFSDSDGRPLFFLKGH  200 (334)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~  200 (334)
                      .+ .+.....+  ..... ..-..+-|+|+++ .+++..                   .+.+|.+||+.+++.+.++...
T Consensus       172 ~T-~~v~~~~~--~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          172 YS-FEPLGKWE--IDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             TT-CCEEEECC--SBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred             CC-CeEEEEEc--cCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence            86 55554321  11111 2234688899999 888774                   3689999999988878777642


Q ss_pred             -C-CCeEEEEE--ccCCcEEEeeec-----CCCeEEEEEccCCCcc--ceee--ccc-----c---------cCCceEEE
Q psy2305         201 -N-GGITHLEF--SSNGILLFSGAR-----KDCEIICWDLRNPGCI--LHTF--PRQ-----V---------STNQRVYF  253 (334)
Q Consensus       201 -~-~~i~~~~~--~~~~~~l~~~~~-----~d~~i~iwd~~~~~~~--~~~~--~~~-----~---------~~~~~~~~  253 (334)
                       . .....+.|  +|+++++++++.     .+++|.+|.... +..  ...+  ...     .         .......+
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence             1 23445655  999999999885     567888776653 321  1111  100     0         01335568


Q ss_pred             EecCCCceEEeeec-CCcEEEEeCCCCCCCCCCCccccccccceeccc--------------ccccceeeeccCCCcccc
Q psy2305         254 DLTSCSNYLLSGNT-NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH--------------QDCTNGVRWKHHKFERDL  318 (334)
Q Consensus       254 ~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~~~~~s~~~~~~  318 (334)
                      .+||||++|.++.. .+.|.+||+......         +.+..+...              .+....+.+  +|||   
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~---------~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l--SpDG---  392 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDISNPFKP---------VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI--SRDG---  392 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECSSTTSC---------EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE--CTTS---
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCc---------EEEEEEEeCCeeccccccccccCCCCCCEEEE--cCCC---
Confidence            89999999987765 689999998643211         333333221              013588999  9999   


Q ss_pred             eeeEEeee
Q psy2305         319 LVADATCS  326 (334)
Q Consensus       319 ~~~l~t~~  326 (334)
                       ++|+++.
T Consensus       393 -k~LyVaN  399 (462)
T 2ece_A          393 -RRVYVTN  399 (462)
T ss_dssp             -SEEEEEC
T ss_pred             -CEEEEEc
Confidence             8887776

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.44  E-value=3.9e-09  Score=84.68  Aligned_cols=254  Identities=14%  Similarity=0.053  Sum_probs=149.3

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE-EeeCCCcEEE
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL-CSSMYAPIHL   91 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~-~~~~d~~i~i   91 (334)
                      |.+|+.+.. +.|+.++++......         ......+.. ......       .++++++++.|. +-...+.|..
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~---------~~~~~~~~~-~~~~~~-------gi~~d~~~~~ly~~d~~~~~I~~   62 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKK---------TEAKAFLHI-PAKVII-------GLAFDCVDKVVYWTDISEPSIGR   62 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCG---------GGCEEEEEE-EEEEEE-------EEEEETTTTEEEEEETTTTEEEE
T ss_pred             CcEEEEEcC-CeEEEEEecCccccc---------ccceeeecC-CCCcEE-------EEEEecCCCEEEEEECCCCEEEE
Confidence            456666654 478889987654310         000011111 112233       445577655544 4455778999


Q ss_pred             EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC
Q psy2305          92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV  169 (334)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  169 (334)
                      +++..+.....+.....     ....+++++++..|+.+.  .+.|.+++++.  .....   ...........++++|+
T Consensus        63 ~~~~g~~~~~~~~~~~~-----~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--~~~~~---~~~~~~~~P~~i~vd~~  132 (267)
T 1npe_A           63 ASLHGGEPTTIIRQDLG-----SPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRRV---LFDTGLVNPRGIVTDPV  132 (267)
T ss_dssp             EESSSCCCEEEECTTCC-----CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEE---EECSSCSSEEEEEEETT
T ss_pred             EecCCCCcEEEEECCCC-----CccEEEEEecCCeEEEEECCCCEEEEEEcCC--CCEEE---EEECCCCCccEEEEeeC
Confidence            99876544333322111     578999999877676554  68899999873  22221   11112245689999997


Q ss_pred             CCcEEEEeec---CCeEEEEECCCCCceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc
Q psy2305         170 HPDICALGTY---SKIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV  245 (334)
Q Consensus       170 ~~~~l~~~~~---dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~  245 (334)
                      +. .|+.+..   .+.|..+++.. +....+ .........++++|++..|+.+....+.|.++|+.. ......+..  
T Consensus       133 ~g-~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~--  207 (267)
T 1npe_A          133 RG-NLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG--  207 (267)
T ss_dssp             TT-EEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEEC--
T ss_pred             CC-EEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecC--
Confidence            66 4444443   46898888753 333333 223345789999998877777664678999999874 222222221  


Q ss_pred             cCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccc-cccceeeeccCCCc
Q psy2305         246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ-DCTNGVRWKHHKFE  315 (334)
Q Consensus       246 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~s~~~  315 (334)
                       ......++.. .+.++++....+.|..+|..++            +.+..+.... .....+++  .|++
T Consensus       208 -~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g------------~~~~~i~~g~~~~p~gi~~--~~~~  262 (267)
T 1npe_A          208 -LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS------------KEMDTFHPHKQTRLYGITI--ALSQ  262 (267)
T ss_dssp             -CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT------------EEEEEECCSSCCCCCCEEE--ECSC
T ss_pred             -CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC------------CceEEEccccccccceeee--cCcc
Confidence             2233455543 3444444445689999999887            5555554332 24678888  8876

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.42  E-value=1.2e-14  Score=122.61  Aligned_cols=222  Identities=13%  Similarity=0.009  Sum_probs=118.7

Q ss_pred             CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEE
Q psy2305          12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHL   91 (334)
Q Consensus        12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~i   91 (334)
                      ++..+++++.||.|+.||..+++...              .+..   ..+.+       ..+..++.++++++.|+.|+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W--------------~~~~---~~~~s-------~p~~~~g~~~v~~s~dg~l~a   63 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKW--------------TLKE---DPVLQ-------VPTHVEEPAFLPDPNDGSLYT   63 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEE--------------EEEC---CCSCC-------CC-----CCEEECTTTCCEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEE--------------EecC---CCcee-------cceEcCCCEEEEeCCCCEEEE
Confidence            57789999999999999999998762              2221   12211       122456777888889999999


Q ss_pred             EeCCCCeeeEEEcCcccccccccee-EEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC
Q psy2305          92 WDSVGGEIKATYRPYNQVDEVTHAY-SLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV  169 (334)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  169 (334)
                      ||.++|+.+..+......    .+. +..+. ++..+++++ ++.+..||..+ ++....    +..+.    ...++|+
T Consensus        64 ~d~~tG~~~w~~~~~~~~----~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~t-G~~~w~----~~~~~----~~~~~p~  129 (369)
T 2hz6_A           64 LGSKNNEGLTKLPFTIPE----LVQASPCRS-SDGILYMGKKQDIWYVIDLLT-GEKQQT----LSSAF----ADSLSPS  129 (369)
T ss_dssp             C-----CCSEECSCCHHH----HHTTCSCC------CCCCEEEEEEEEECCC----------------------------
T ss_pred             EECCCCceeeeeeccCcc----ccccCceEe-cCCEEEEEeCCCEEEEEECCC-CcEEEE----ecCCC----ccccccc
Confidence            999999887666532110    110 11111 234566665 89999999987 555442    22222    2345667


Q ss_pred             CCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC---cEEEeeecCCCeEEEEEccCCCccceeeccccc
Q psy2305         170 HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG---ILLFSGARKDCEIICWDLRNPGCILHTFPRQVS  246 (334)
Q Consensus       170 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  246 (334)
                      +. .+++++.++.|+.||.++++.+..+..+.  .....+.++.   ..+++++ .++.++.||.++ ++.+.++..   
T Consensus       130 ~~-~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~-~dg~v~a~d~~t-G~~~W~~~~---  201 (369)
T 2hz6_A          130 TS-LLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN-GDGLVVTVDSES-GDVLWIQNY---  201 (369)
T ss_dssp             ----EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE-TSCEEEEECTTT-CCEEEEEEC---
T ss_pred             CC-EEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC-CCCEEEEEECCC-CcEEEEecC---
Confidence            77 88889999999999999998776654221  1223334332   4577788 799999999987 766665542   


Q ss_pred             CCceE-EEEecCCCceEEee--ecCCcEEEEeCCCC
Q psy2305         247 TNQRV-YFDLTSCSNYLLSG--NTNGDLSIWNVNTS  279 (334)
Q Consensus       247 ~~~~~-~~~~s~~~~~l~~~--~~dg~i~iwd~~~~  279 (334)
                      ...+. ...++++|...+..  ..++.++.+|..++
T Consensus       202 ~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG  237 (369)
T 2hz6_A          202 ASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSG  237 (369)
T ss_dssp             SSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHH
T ss_pred             CCceEEEEEecCCceEeccceeecccceeeeehhcC
Confidence            22232 34455666432110  01334566666554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.42  E-value=1.1e-13  Score=116.61  Aligned_cols=181  Identities=11%  Similarity=0.043  Sum_probs=101.4

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccc
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKP  154 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~  154 (334)
                      ++..+++++.|+.|..||..+|+.+..+.. .      .+.+..+..++..+++++ |+.|..||..+ ++......  .
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~--~   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLP--F   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C------CSCCCC-----CCEEECTTTCCEEEC------CCSEECS--C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C------CceecceEcCCCEEEEeCCCCEEEEEECCC-Cceeeeee--c
Confidence            567889999999999999999999888765 2      344555566777777765 99999999976 54433211  1


Q ss_pred             cccccceE-EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         155 WFRKNIVS-AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       155 ~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      . ....+. ...+. .+. .+++++.++.|+.||.++++.+..+..+.    ...++|++..+++++ .++.|+.||.++
T Consensus        78 ~-~~~~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~-~dg~v~a~d~~t  149 (369)
T 2hz6_A           78 T-IPELVQASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR-TEYTITMYDTKT  149 (369)
T ss_dssp             C-HHHHHTTCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEE-EEEEEECCCSSS
T ss_pred             c-CccccccCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe-cCCEEEEEECCC
Confidence            1 001110 01111 234 67788899999999999999888776543    245567888899998 799999999988


Q ss_pred             CCccceeecccccCCceEEEEecCCC---ceEEeeecCCcEEEEeCCCC
Q psy2305         234 PGCILHTFPRQVSTNQRVYFDLTSCS---NYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~  279 (334)
                       ++.+..+.....    ....++++.   ..+++++.||.|+.||..++
T Consensus       150 -G~~~W~~~~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG  193 (369)
T 2hz6_A          150 -RELRWNATYFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESG  193 (369)
T ss_dssp             -SSCCCEEEEEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred             -CCEEEeEecccc----cCccccCCccccceEEEECCCCEEEEEECCCC
Confidence             666665543211    112233332   56777888999999999998

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.41  E-value=4.7e-11  Score=108.37  Aligned_cols=263  Identities=14%  Similarity=0.072  Sum_probs=165.2

Q ss_pred             CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC------
Q psy2305          12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM------   85 (334)
Q Consensus        12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~------   85 (334)
                      ++..|++++.|+.|..+|..+++....+.......          ....+..   .|   . -.++ .+++++.      
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~----------~~~~~~~---~p---~-v~~~-~v~v~~~~~~~~~  188 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK----------GSLTITG---AP---R-VFKG-KVIIGNGGAEYGV  188 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCC----------SSCBCCS---CC---E-EETT-EEEECCBCTTTCC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcC----------cCccccc---Cc---E-EECC-EEEEEecccccCC
Confidence            45678888899999999999998764332210000          0000100   00   0 0134 4444442      


Q ss_pred             CCcEEEEeCCCCeeeEEEcCccccc---------------------------cccceeEEEEcCCCCEEEEee-CC----
Q psy2305          86 YAPIHLWDSVGGEIKATYRPYNQVD---------------------------EVTHAYSLAFSLDGNKIYAGF-LS----  133 (334)
Q Consensus        86 d~~i~iwd~~~~~~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~l~~~~-d~----  133 (334)
                      ++.|..+|..+|+.+..+.......                           .......++++|++..++.+. ++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            6899999999999988776432210                           000113578899988888765 42    


Q ss_pred             ---------------cEEEEEcCCCCCeeeeecccccccc-------cceEEEEEcCCC---CcEEEEeecCCeEEEEEC
Q psy2305         134 ---------------EVKIFSTDRPGRECVSRNLKPWFRK-------NIVSAIAINPVH---PDICALGTYSKIIGLFSD  188 (334)
Q Consensus       134 ---------------~i~i~d~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~---~~~l~~~~~dg~i~i~d~  188 (334)
                                     .|..+|..+ ++......  ...|.       ....-+....+|   + .++.++.+|.++++|.
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~T-G~~~W~~~--~~~~d~wd~~~~~~p~l~~~~~dG~~~~-~l~~~~~~G~l~~lD~  344 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDT-GKYKWHYQ--ETPGDNWDYTSTQPMILADIKIAGKPRK-VILHAPKNGFFFVLDR  344 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTT-CCEEEEEE--SSTTCCSCCCCCSCCEEEEEEETTEEEE-EEEECCTTSEEEEEET
T ss_pred             CCCCCccCCCCeeeEEEEEEECCC-CCEEEEEe--cCCCcccccccCCCcEEEecccCCcEee-EEEEECCCCEEEEEEC
Confidence                           489999987 66655321  12221       122233344466   5 8899999999999999


Q ss_pred             CCCCceEeeccCC-----------CCe------------------------EEEEEccCCcEEEeeecC-----------
Q psy2305         189 SDGRPLFFLKGHN-----------GGI------------------------THLEFSSNGILLFSGARK-----------  222 (334)
Q Consensus       189 ~~~~~~~~~~~~~-----------~~i------------------------~~~~~~~~~~~l~~~~~~-----------  222 (334)
                      ++++.+..+....           .++                        ..++++|++.++++.. .           
T Consensus       345 ~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~-~~~~~~~~~~~~  423 (677)
T 1kb0_A          345 TNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPA-QNVPVNLMDDKK  423 (677)
T ss_dssp             TTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEE-EECCCEEEECTT
T ss_pred             CCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeC-hhcceeeecccc
Confidence            9999876654211           011                        1468899888887754 2           


Q ss_pred             --------------------------------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCc
Q psy2305         223 --------------------------------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGD  270 (334)
Q Consensus       223 --------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~  270 (334)
                                                      .+.|..||+.+ ++.+.++...   .......+..++.+++.++.||.
T Consensus       424 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~  499 (677)
T 1kb0_A          424 WEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGR  499 (677)
T ss_dssp             CCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEES---SSCCCCEEEETTTEEEEECTTSE
T ss_pred             cccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCC---CCCcCcceEeCCCEEEEECCCCc
Confidence                                            17899999988 7766666532   12222334567778888999999


Q ss_pred             EEEEeCCCCCCCCCCCccccccccceeccccc-ccceeeeccCCCc
Q psy2305         271 LSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD-CTNGVRWKHHKFE  315 (334)
Q Consensus       271 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~s~~~  315 (334)
                      +++||.+++            +.+..+....+ .-.-+.|  .++|
T Consensus       500 l~a~D~~tG------------~~lw~~~~~~~~~~~p~~y--~~~G  531 (677)
T 1kb0_A          500 LVAYHAATG------------EKLWEAPTGTGVVAAPSTY--MVDG  531 (677)
T ss_dssp             EEEEETTTC------------CEEEEEECSSCCCSCCEEE--EETT
T ss_pred             EEEEECCCC------------ceeeeeeCCCCcccCCEEE--EeCC
Confidence            999999999            66666654332 3345667  7788

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.40  E-value=9.3e-11  Score=106.64  Aligned_cols=275  Identities=13%  Similarity=0.074  Sum_probs=166.3

Q ss_pred             CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee-----CC
Q psy2305          12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS-----MY   86 (334)
Q Consensus        12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~-----~d   86 (334)
                      ++..|++++.|+.|..+|..+++.........             +......+...|   . -.++.+++..+     .+
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~-------------~~~~~~~~~~sP---~-v~~g~v~vg~~~~~~~~~  182 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA-------------DHKRSYTITGAP---R-VVNGKVVIGNGGAEFGVR  182 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCS-------------CTTSCCBCCSCC---E-EETTEEEECCBCTTTCCB
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcC-------------CCCCCccccCCc---E-EECCEEEEEeCCCccCCC
Confidence            35578888899999999999998763222110             000000000011   0 01444444322     36


Q ss_pred             CcEEEEeCCCCeeeEEEcCccccc--------------------------cccceeEEEEcCCCCEEEEee-CC------
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVD--------------------------EVTHAYSLAFSLDGNKIYAGF-LS------  133 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~l~~~~-d~------  133 (334)
                      +.|..||.++|+.+..+.......                          .......++++|++..++.+. ++      
T Consensus       183 g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~  262 (689)
T 1yiq_A          183 GYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPK  262 (689)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred             CEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccC
Confidence            899999999999987775311000                          000112578899888888775 54      


Q ss_pred             -------------cEEEEEcCCCCCeeeeecccccccc-------cceEEEEEcCCCC--cEEEEeecCCeEEEEECCCC
Q psy2305         134 -------------EVKIFSTDRPGRECVSRNLKPWFRK-------NIVSAIAINPVHP--DICALGTYSKIIGLFSDSDG  191 (334)
Q Consensus       134 -------------~i~i~d~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~  191 (334)
                                   .|..+|..+ ++......  ...|.       .++.-.....+|+  ..++.++.+|.++++|.+++
T Consensus       263 ~~~~~~gd~~y~~~v~AlD~~T-G~~~W~~~--~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  339 (689)
T 1yiq_A          263 WRSQAKGDNLFLSSIVAVNADT-GEYVWHYQ--TTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG  339 (689)
T ss_dssp             HHHTTCSCCTTTTEEEEEETTT-CCEEEEEE--SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             CCCCCCCCceeeeeEEEEEccC-CceeEeee--cCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC
Confidence                         399999998 66655321  11121       1222222222442  26888999999999999999


Q ss_pred             CceEeeccCC----------------------------C-----------CeEEEEEccCCcEEEeeec-----------
Q psy2305         192 RPLFFLKGHN----------------------------G-----------GITHLEFSSNGILLFSGAR-----------  221 (334)
Q Consensus       192 ~~~~~~~~~~----------------------------~-----------~i~~~~~~~~~~~l~~~~~-----------  221 (334)
                      +.+.......                            .           .-..++|+|+..++++...           
T Consensus       340 ~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~  419 (689)
T 1yiq_A          340 ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPE  419 (689)
T ss_dssp             CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSS
T ss_pred             CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccc
Confidence            8874322110                            0           0112688888877776531           


Q ss_pred             ---------------------------------CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC
Q psy2305         222 ---------------------------------KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN  268 (334)
Q Consensus       222 ---------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d  268 (334)
                                                       .+|.|+.||+.+ ++.+.++..+..   ...-.+...+.++++++.|
T Consensus       420 ~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~---~~~g~~~tagglvf~gt~d  495 (689)
T 1yiq_A          420 APKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVTI---FNGGTLSTAGNLVFEGSAD  495 (689)
T ss_dssp             CCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESSS---CCCCEEEETTTEEEEECTT
T ss_pred             cccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCCC---ccCccceECCCEEEEECCC
Confidence                                             037799999998 777766654321   1112345677889999999


Q ss_pred             CcEEEEeCCCCCCCCCCCccccccccceeccccc-ccceeeeccCCCcccceeeEEeeec
Q psy2305         269 GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD-CTNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       269 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                      |.|+.||.+++            +.+..+....+ .-.-+.|  ..+|.   +++++.+.
T Consensus       496 g~l~a~D~~tG------------~~lw~~~~~~~~~~~p~ty--~~~G~---qyv~~~~G  538 (689)
T 1yiq_A          496 GRVIAYAADTG------------EKLWEQPAASGVMAAPVTY--SVDGE---QYVTFMAG  538 (689)
T ss_dssp             SEEEEEETTTC------------CEEEEEECSSCCCSCCEEE--EETTE---EEEEEEEC
T ss_pred             CcEEEEECCCC------------ccceeeeCCCCcccCceEE--EECCE---EEEEEEec
Confidence            99999999999            66666654433 2345778  78883   46665544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.40  E-value=2.3e-11  Score=105.66  Aligned_cols=256  Identities=10%  Similarity=0.008  Sum_probs=159.9

Q ss_pred             CCCcEEEEeeC-CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceec-CCCcEEEEee----
Q psy2305          11 PDGTCLLTNSN-DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSID-GFTSYFLCSS----   84 (334)
Q Consensus        11 p~~~~l~~~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s-~~~~~l~~~~----   84 (334)
                      +||++|+.... ++.|.+.|+.+.+..              ..+..........+++.      + |+++++++++    
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~--------------~ii~ip~g~~phg~~~~------~~p~~~~v~~~~~~~~  158 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCD--------------AILEIPNAKGIHGLRPQ------KWPRSNYVFCNGEDET  158 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEE--------------EEEECSSCCSEEEEEEC------CSSBCSEEEEEECSCE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEe--------------eEEeCCCCCCCcceeee------ecCCCcEEEEeccccc
Confidence            38888877664 567999999998865              22322222334444431      4 7888887774    


Q ss_pred             --------------CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-Cc--------------
Q psy2305          85 --------------MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-SE--------------  134 (334)
Q Consensus        85 --------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~--------------  134 (334)
                                    .++.+.+.|.++.+...++....      ....++++|+|+++++.+ + ..              
T Consensus       159 p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg------~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~  232 (595)
T 1fwx_A          159 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDH  232 (595)
T ss_dssp             ESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred             ccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC------CccceEECCCCCEEEEEecCcccCcchhhccccccce
Confidence                          24578999999998888876533      235788999999999775 3 22              


Q ss_pred             EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC--CCc-eEeeccCCCCeEEEEEcc
Q psy2305         135 VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD--GRP-LFFLKGHNGGITHLEFSS  211 (334)
Q Consensus       135 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~-~~~~~~~~~~i~~~~~~~  211 (334)
                      +.+.|...              .      ..+.++|+ ....    +.|.+.|.++  ++. +..+.. .....++.++|
T Consensus       233 v~V~~~~~--------------~------~~~v~~Gk-~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sP  286 (595)
T 1fwx_A          233 IVVFNIAE--------------I------EKAIAAGD-YQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAP  286 (595)
T ss_dssp             EEEEEHHH--------------H------HHHHHHTC-SEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECT
T ss_pred             EEEeeccc--------------e------eEeccCCC-eeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcC
Confidence            33333221              0      01234565 3332    4599999988  555 455543 23456899999


Q ss_pred             CCcEEEeeecCCCeEEEEEccCCCcc--------ce-eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCC
Q psy2305         212 NGILLFSGARKDCEIICWDLRNPGCI--------LH-TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLP  282 (334)
Q Consensus       212 ~~~~l~~~~~~d~~i~iwd~~~~~~~--------~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  282 (334)
                      ||+++++++..+.++.++|+.+ .+.        .. ....-..+.....++|+|+|...++...|++|.+||+......
T Consensus       287 DGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~  365 (595)
T 1fwx_A          287 DKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRA  365 (595)
T ss_dssp             TSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHH
T ss_pred             CCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhh
Confidence            9999888876789999999985 210        00 1111112455778999999944455666999999998762100


Q ss_pred             CCCCccccccccceeccc-----ccccceeeeccCCCcccceeeEEeeec
Q psy2305         283 SSPYEESVQEPLYKFSAH-----QDCTNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                      +  ..+...+.+..+..|     ...-..+..  +|||    ++|+++..
T Consensus       366 ~--~g~~~~~vi~kidV~yqpGh~~~~~g~t~--~~DG----k~l~~~Nk  407 (595)
T 1fwx_A          366 Y--AGEKVDPIKDKLDVHYQPGHLKTVMGETL--DATN----DWLVCLSK  407 (595)
T ss_dssp             H--HTCSCCCEEEEEECSSCEEEEEETTTTST--TCCS----SEEEEEES
T ss_pred             h--cccccceeEEEeecccccccceeccceEe--CCCC----CEEEEcCC
Confidence            0  000001345555443     223355677  9999    99888743

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.39  E-value=1.9e-11  Score=101.93  Aligned_cols=248  Identities=8%  Similarity=-0.094  Sum_probs=155.8

Q ss_pred             eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee----------CCCcEEEEe
Q psy2305          24 HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS----------MYAPIHLWD   93 (334)
Q Consensus        24 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~----------~d~~i~iwd   93 (334)
                      +|.++|..+++..              ..+..+..         | .+.++||+++++++.          .++.|.+||
T Consensus        47 ~vsvID~~t~~v~--------------~~i~vG~~---------P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD  102 (368)
T 1mda_H           47 ENWVSCAGCGVTL--------------GHSLGAFL---------S-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD  102 (368)
T ss_dssp             EEEEEETTTTEEE--------------EEEEECTT---------C-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred             eEEEEECCCCeEE--------------EEEeCCCC---------C-ceEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            8889999998876              34433322         3 355588999988886          367899999


Q ss_pred             CCCCeeeEEEcCccccc--cccceeEEEEcCCCCEEEEee---CCcEEE--EEcCCCCCeeeeecccccccccceEEEEE
Q psy2305          94 SVGGEIKATYRPYNQVD--EVTHAYSLAFSLDGNKIYAGF---LSEVKI--FSTDRPGRECVSRNLKPWFRKNIVSAIAI  166 (334)
Q Consensus        94 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~---d~~i~i--~d~~~~~~~~~~~~~~~~~~~~~v~~~~~  166 (334)
                      +.+++.+..+.......  .......++++|||++++++.   ...+.+  +|+.+    ....+  ..   ..   +.+
T Consensus       103 ~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~--v~---~~---~~~  170 (368)
T 1mda_H          103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTK--SA---SC---FHI  170 (368)
T ss_dssp             TTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEE--CS---SC---CCC
T ss_pred             CCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEE--CC---Cc---eEE
Confidence            99999998886431000  001356899999999999774   357888  88874    22211  11   11   223


Q ss_pred             cCCCCcEEEEeecCCeEEEEECCC-----CCceE----eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC-c
Q psy2305         167 NPVHPDICALGTYSKIIGLFSDSD-----GRPLF----FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG-C  236 (334)
Q Consensus       167 ~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~-~  236 (334)
                      .|+++..+++.+.|+.+.+.|+.+     ++...    .+.-...+.   . ++++..++..+ . +.+.+.|..... .
T Consensus       171 ~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs-~-~~V~viD~~~~~~~  244 (368)
T 1mda_H          171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV-A-SSILQGDIPAAGAT  244 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB-S-SCCEEEECCSSCCE
T ss_pred             ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc-C-CEEEEEECCCCcce
Confidence            456654666677888888888876     33221    111122333   3 67777777888 6 999999986421 1


Q ss_pred             cceeeccc--------ccCCceEEEEecCCCceEEeeec-C--------CcEEEEeCCCCCCCCCCCccccccccceecc
Q psy2305         237 ILHTFPRQ--------VSTNQRVYFDLTSCSNYLLSGNT-N--------GDLSIWNVNTSNLPSSPYEESVQEPLYKFSA  299 (334)
Q Consensus       237 ~~~~~~~~--------~~~~~~~~~~~s~~~~~l~~~~~-d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  299 (334)
                      ....+...        ........++++|+++.++++.. .        +.+.++|+.+.            +.+..+..
T Consensus       245 v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~------------~vv~~i~v  312 (368)
T 1mda_H          245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG------------QTSGPISN  312 (368)
T ss_dssp             EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC------------CEEECCEE
T ss_pred             EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC------------eEEEEEEC
Confidence            11111100        00011111568999988876543 2        35679999998            56666654


Q ss_pred             cccccceeeeccCCCccccee-eEEeee-cceeee
Q psy2305         300 HQDCTNGVRWKHHKFERDLLV-ADATCS-GQITNV  332 (334)
Q Consensus       300 ~~~~i~~~~~~~s~~~~~~~~-~l~t~~-~d~~i~  332 (334)
                      .. ....++|  +||+    + ++++.. .++.|.
T Consensus       313 g~-~p~gi~~--s~Dg----~~l~va~~~~~~~Vs  340 (368)
T 1mda_H          313 GH-DSDAIIA--AQDG----ASDNYANSAGTEVLD  340 (368)
T ss_dssp             EE-EECEEEE--CCSS----SCEEEEEETTTTEEE
T ss_pred             CC-CcceEEE--CCCC----CEEEEEccCCCCeEE
Confidence            33 5789999  9999    7 455555 477664

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.36  E-value=1.5e-09  Score=85.78  Aligned_cols=198  Identities=11%  Similarity=0.003  Sum_probs=131.5

Q ss_pred             eeEEEEcCCCcEEEEeeC--CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           4 EEDVDEAPDGTCLLTNSN--DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~--d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ...++|+||+...++.+.  ++.|+++|+.+++...              .+..........+.+       + .+++.+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~--------------~i~l~~~~fgeGi~~-------~-g~~lyv   80 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVEN--------------IHKMDDSYFGEGLTL-------L-NEKLYQ   80 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEE--------------EEECCTTCCEEEEEE-------E-TTEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEE--------------EEecCCCcceEEEEE-------e-CCEEEE
Confidence            468999998754444443  5799999999998763              221111111112222       2 234445


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc-ccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF-RKN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-~~~  159 (334)
                      +.-.++.+.++|..+.+.+..+...  ..   .  ...+++||+.|+++. ++.|.++|..+ .+.....++...+ .-.
T Consensus        81 ~t~~~~~v~viD~~t~~v~~~i~~g--~~---~--g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~p~~  152 (266)
T 2iwa_A           81 VVWLKNIGFIYDRRTLSNIKNFTHQ--MK---D--GWGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGHRVI  152 (266)
T ss_dssp             EETTCSEEEEEETTTTEEEEEEECC--SS---S--CCEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTEECC
T ss_pred             EEecCCEEEEEECCCCcEEEEEECC--CC---C--eEEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCcccc
Confidence            5556889999999999999888643  11   1  233566888787665 78999999986 4555443211111 112


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC-------------CCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-------------NGGITHLEFSSNGILLFSGARKDCEI  226 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~~d~~i  226 (334)
                      .++.+.|. ++. +++....++.|.+.|..+++.+..+...             ......++|+|+++.|++++...+.+
T Consensus       153 ~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v  230 (266)
T 2iwa_A          153 RLNELEYI-NGE-VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL  230 (266)
T ss_dssp             CEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             cceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence            46788888 665 6666656889999999999988887531             13568999999988666655478889


Q ss_pred             EEEEccC
Q psy2305         227 ICWDLRN  233 (334)
Q Consensus       227 ~iwd~~~  233 (334)
                      ...++..
T Consensus       231 ~~i~l~~  237 (266)
T 2iwa_A          231 FEIKLHL  237 (266)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9988875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.30  E-value=4.8e-09  Score=88.61  Aligned_cols=236  Identities=12%  Similarity=0.042  Sum_probs=135.9

Q ss_pred             CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEE
Q psy2305          12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHL   91 (334)
Q Consensus        12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~i   91 (334)
                      ++..+++++.++.|..+|..+++.............      .......+..   .|     ..++..+++++.++.|..
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~------~~~~~~~~~~---~~-----~~~~~~v~v~~~~g~l~a  117 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW------FSKEPALLSG---GV-----TVSGGHVYIGSEKAQVYA  117 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---C------CSCCCCCEEE---EE-----EEETTEEEEEETTSEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCcccccc------ccccCccccc---Cc-----eEeCCEEEEEcCCCEEEE
Confidence            355788888889999999999887532211100000      0000111111   11     114456777888999999


Q ss_pred             EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc-ccceEEEEEcCC
Q psy2305          92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR-KNIVSAIAINPV  169 (334)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~  169 (334)
                      +|.++|+.+.........     ....... ++ .++++. ++.+..+|..+ ++............ ..........  
T Consensus       118 ~d~~tG~~~W~~~~~~~~-----~~~p~~~-~~-~v~v~~~~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~~~~~--  187 (376)
T 3q7m_A          118 LNTSDGTVAWQTKVAGEA-----LSRPVVS-DG-LVLIHTSNGQLQALNEAD-GAVKWTVNLDMPSLSLRGESAPTTA--  187 (376)
T ss_dssp             EETTTCCEEEEEECSSCC-----CSCCEEE-TT-EEEEECTTSEEEEEETTT-CCEEEEEECCC-----CCCCCCEEE--
T ss_pred             EECCCCCEEEEEeCCCce-----EcCCEEE-CC-EEEEEcCCCeEEEEECCC-CcEEEEEeCCCCceeecCCCCcEEE--
Confidence            999999988776543321     1111122 33 555555 89999999987 65554321100000 0000112222  


Q ss_pred             CCcEEEEeecCCeEEEEECCCCCceEeeccCCCC----eEE---EEEcc--CCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         170 HPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG----ITH---LEFSS--NGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       170 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----i~~---~~~~~--~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      +. .++.+..++.+..+|.++++.+.........    +..   +.-.|  .+..++.++ .++.+..+|.++ ++.+..
T Consensus       188 ~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~-~~g~l~~~d~~t-G~~~w~  264 (376)
T 3q7m_A          188 FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA-YNGNLTALDLRS-GQIMWK  264 (376)
T ss_dssp             TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC-TTSCEEEEETTT-CCEEEE
T ss_pred             CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe-cCcEEEEEECCC-CcEEee
Confidence            33 6777888999999999999887666422110    000   11111  245677777 799999999987 665555


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      ....    ....+..  ++..++.++.++.|..+|..+++
T Consensus       265 ~~~~----~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          265 RELG----SVNDFIV--DGNRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             ECCC----CEEEEEE--ETTEEEEEETTCCEEEEETTTCC
T ss_pred             ccCC----CCCCceE--ECCEEEEEcCCCeEEEEECCCCc
Confidence            4421    1223332  35677777889999999999883

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.29  E-value=1e-09  Score=99.69  Aligned_cols=284  Identities=9%  Similarity=0.049  Sum_probs=167.2

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW   92 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw   92 (334)
                      +..|++++.++.|.-+|..+++..-.+...........  ...   ..+.      ..+++  ++..|++++.|+.|..+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~--~~~---~~~~------~~~a~--~~~~v~v~~~dg~l~al  143 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFK--GCC---DVVN------RGVAL--WKGKVYVGAWDGRLIAL  143 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGG--SSS---CSCC------CCCEE--ETTEEEEECTTSEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccc--ccc---cCCC------CCceE--ECCEEEEEcCCCEEEEE
Confidence            44567777788999999999887632221110000000  000   0000      01111  45567888889999999


Q ss_pred             eCCCCeeeEEEcCc-cccccccceeEEEEcCCCCEEEEee------CCcEEEEEcCCCCCeeeeeccccc----------
Q psy2305          93 DSVGGEIKATYRPY-NQVDEVTHAYSLAFSLDGNKIYAGF------LSEVKIFSTDRPGRECVSRNLKPW----------  155 (334)
Q Consensus        93 d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~~~----------  155 (334)
                      |..+|+.+..+... .... ...+.+.-.-.++..++...      ++.|..+|..+ ++.+........          
T Consensus       144 D~~tG~~~W~~~~~~~~~~-~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~~~~~~~~~~  221 (677)
T 1kb0_A          144 DAATGKEVWHQNTFEGQKG-SLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAET-GERKWRWFSVPGDPSKPFEDES  221 (677)
T ss_dssp             ETTTCCEEEEEETTTTCCS-SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT-CCEEEEEESSCCCTTSCCSSHH
T ss_pred             ECCCCCEEeeecCCcCcCc-CcccccCcEEECCEEEEEecccccCCCCEEEEEECCC-CcEEEEeccCCCCccccccccc
Confidence            99999998887754 1100 00111100111344333322      58899999987 665543211000          


Q ss_pred             ------------------ccccceEEEEEcCCCCcEEEEeecCC-------------------eEEEEECCCCCceEeec
Q psy2305         156 ------------------FRKNIVSAIAINPVHPDICALGTYSK-------------------IIGLFSDSDGRPLFFLK  198 (334)
Q Consensus       156 ------------------~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~  198 (334)
                                        +.......++++|++. .++.+..++                   .|..+|.++++.+..++
T Consensus       222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~  300 (677)
T 1kb0_A          222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ  300 (677)
T ss_dssp             HHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred             cccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe
Confidence                              1111123578899888 888776654                   59999999999887765


Q ss_pred             c--CC-------CCeEEEEEccCC---cEEEeeecCCCeEEEEEccCCCccceeeccccc---------CCce-------
Q psy2305         199 G--HN-------GGITHLEFSSNG---ILLFSGARKDCEIICWDLRNPGCILHTFPRQVS---------TNQR-------  250 (334)
Q Consensus       199 ~--~~-------~~i~~~~~~~~~---~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~-------  250 (334)
                      .  |.       ....-+....+|   +.++.++ .+|.++++|..+ ++.+..+.....         ...+       
T Consensus       301 ~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~  378 (677)
T 1kb0_A          301 ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARD  378 (677)
T ss_dssp             SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGC
T ss_pred             cCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCc
Confidence            3  21       112223344477   6788888 899999999988 766654432100         0000       


Q ss_pred             -----------------EEEEecCCCceEEeeecC-------------------------------------------Cc
Q psy2305         251 -----------------VYFDLTSCSNYLLSGNTN-------------------------------------------GD  270 (334)
Q Consensus       251 -----------------~~~~~s~~~~~l~~~~~d-------------------------------------------g~  270 (334)
                                       ..++++|++.++++...+                                           |.
T Consensus       379 ~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~  458 (677)
T 1kb0_A          379 GSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGR  458 (677)
T ss_dssp             TTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEE
T ss_pred             CCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccE
Confidence                             135778988888765432                                           67


Q ss_pred             EEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         271 LSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       271 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      |..||+.++            +.+..+. +...+....+  ..++    .+++.++.||.++.
T Consensus       459 l~A~D~~tG------------~~~W~~~-~~~~~~~g~~--~~~g----~~v~~g~~dg~l~a  502 (677)
T 1kb0_A          459 LLAWDPVAQ------------KAAWSVE-HVSPWNGGTL--TTAG----NVVFQGTADGRLVA  502 (677)
T ss_dssp             EEEEETTTT------------EEEEEEE-ESSSCCCCEE--EETT----TEEEEECTTSEEEE
T ss_pred             EEEEeCCCC------------cEEeecC-CCCCCcCcce--EeCC----CEEEEECCCCcEEE
Confidence            899999988            4444443 2334555666  6677    77888888888764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.28  E-value=1.9e-09  Score=98.12  Aligned_cols=206  Identities=11%  Similarity=0.084  Sum_probs=121.5

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW   92 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw   92 (334)
                      +..|++++.++.|.-+|..+++..-.+..........  ..   ....+.      ..++  ..+..|++++.|+.|..+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~--~~---~~~~~~------~~~~--~~~g~v~v~~~dg~l~Al  136 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAG--EA---CCDAVN------RGVA--VWKGKVYVGVLDGRLEAI  136 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGG--GC---TTCSCC------CCCE--EETTEEEEECTTSEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccc--cc---cccCCC------CccE--EECCEEEEEccCCEEEEE
Confidence            4567777788899999999998764322110000000  00   000000      0011  134567888889999999


Q ss_pred             eCCCCeeeEEEcCccccccccceeEEEEcC---CCCEEEEee------CCcEEEEEcCCCCCeeeeecccc-c-------
Q psy2305          93 DSVGGEIKATYRPYNQVDEVTHAYSLAFSL---DGNKIYAGF------LSEVKIFSTDRPGRECVSRNLKP-W-------  155 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~~-~-------  155 (334)
                      |.++|+.+..+.......   ....+..+|   ++..++..+      ++.|..||..+ ++.+....... .       
T Consensus       137 Da~TG~~~W~~~~~~~~~---~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~p~~~~~~  212 (689)
T 1yiq_A          137 DAKTGQRAWSVDTRADHK---RSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAET-GKEAWRFYTVPGDPKLPPEG  212 (689)
T ss_dssp             ETTTCCEEEEEECCSCTT---SCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT-CCEEEEEESSCCCTTSCCCS
T ss_pred             ECCCCCEeeeecCcCCCC---CCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCC-CcEEEEecccCCCccccccc
Confidence            999999988776530100   001111111   444444221      58899999998 66554321000 0       


Q ss_pred             -------------------ccccceEEEEEcCCCCcEEEEeecCCe-------------------EEEEECCCCCceEee
Q psy2305         156 -------------------FRKNIVSAIAINPVHPDICALGTYSKI-------------------IGLFSDSDGRPLFFL  197 (334)
Q Consensus       156 -------------------~~~~~v~~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~  197 (334)
                                         +.......++++|+.. +++.+..++.                   |..+|.++++.+-.+
T Consensus       213 ~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~  291 (689)
T 1yiq_A          213 KGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHY  291 (689)
T ss_dssp             HHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred             ccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEee
Confidence                               1111123578899888 8888887764                   999999999988777


Q ss_pred             cc--CC-------CCeEEEEEccCCc---EEEeeecCCCeEEEEEccCCCccc
Q psy2305         198 KG--HN-------GGITHLEFSSNGI---LLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       198 ~~--~~-------~~i~~~~~~~~~~---~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      +.  |.       .+..-.....+|+   .++.++ .+|.++++|.++ ++++
T Consensus       292 ~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~t-G~~l  342 (689)
T 1yiq_A          292 QTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRAT-GELL  342 (689)
T ss_dssp             ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTT-CCEE
T ss_pred             ecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCC-CCEe
Confidence            53  21       1222223333665   788888 899999999988 6655

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.28  E-value=4.7e-10  Score=92.86  Aligned_cols=213  Identities=14%  Similarity=0.064  Sum_probs=139.4

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccc
Q psy2305          77 TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        77 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +..|..++.++.|..+|.. ++..........     .+.++...+++..++...++.+..+|..  +.....    ...
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~-----~~~~~~~~~~g~l~vgt~~~~l~~~d~~--g~~~~~----~~~  174 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKA-----IYATPIVSEDGTIYVGSNDNYLYAINPD--GTEKWR----FKT  174 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSC-----CCSCCEECTTSCEEEECTTSEEEEECTT--SCEEEE----EEC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCc-----eeeeeEEcCCCEEEEEcCCCEEEEECCC--CCEeEE----Eec
Confidence            3456777778899999987 777665554322     4566777778875554447999999987  444432    222


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      ....+.++...+++. +. .++  +.|..+| .+++....+......+.++...++|. |..++ .++.+..+|..  +.
T Consensus       175 ~~~~~~~~~~d~~g~-l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t-~~~gl~~~~~~--g~  245 (330)
T 3hxj_A          175 NDAITSAASIGKDGT-IY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTS-LDGHLYAINPD--GT  245 (330)
T ss_dssp             SSCCCSCCEECTTCC-EE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEE-TTTEEEEECTT--SC
T ss_pred             CCCceeeeEEcCCCE-EE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEc-CCCeEEEECCC--CC
Confidence            344566777878886 44 454  8899999 77777776665556678888888875 55566 57888888743  44


Q ss_pred             cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~  316 (334)
                      .+..+...  ......+...+++ .|..++.+|.|..+|. ++            +.+..+......+.++..  .+++ 
T Consensus       246 ~~~~~~~~--~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g------------~~~~~~~~~~~~~~~~~~--d~~g-  306 (330)
T 3hxj_A          246 EKWRFKTG--KRIESSPVIGNTD-TIYFGSYDGHLYAINP-DG------------TEKWNFETGSWIIATPVI--DENG-  306 (330)
T ss_dssp             EEEEEECS--SCCCSCCEECTTS-CEEEECTTCEEEEECT-TS------------CEEEEEECSSCCCSCCEE--CTTC-
T ss_pred             EeEEeeCC--CCccccceEcCCC-eEEEecCCCCEEEECC-CC------------cEEEEEEcCCccccceEE--cCCC-
Confidence            44444432  1112223344555 4556677888999996 44            344444444556777777  7887 


Q ss_pred             cceeeEEeeecceeeee
Q psy2305         317 DLLVADATCSGQITNVK  333 (334)
Q Consensus       317 ~~~~~l~t~~~d~~i~~  333 (334)
                         . |..++.+|.++.
T Consensus       307 ---~-l~~gt~~G~~~~  319 (330)
T 3hxj_A          307 ---T-IYFGTRNGKFYA  319 (330)
T ss_dssp             ---C-EEEECTTSCEEE
T ss_pred             ---E-EEEEcCCCeEEE
Confidence               5 566888887764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.27  E-value=1.9e-09  Score=85.23  Aligned_cols=193  Identities=9%  Similarity=-0.015  Sum_probs=128.4

Q ss_pred             cceecCCCcEEEEeeC--CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCC
Q psy2305          70 TSSIDGFTSYFLCSSM--YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGR  145 (334)
Q Consensus        70 ~~~~s~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~  145 (334)
                      .+.+++++.++++.+.  ++.|.++|+.+++.+..+....+.    ....+++.  +..|+.+.  ++.+.++|..+ .+
T Consensus        25 Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~----fgeGi~~~--g~~lyv~t~~~~~v~viD~~t-~~   97 (266)
T 2iwa_A           25 GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY----FGEGLTLL--NEKLYQVVWLKNIGFIYDRRT-LS   97 (266)
T ss_dssp             EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC----CEEEEEEE--TTEEEEEETTCSEEEEEETTT-TE
T ss_pred             cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc----ceEEEEEe--CCEEEEEEecCCEEEEEECCC-Cc
Confidence            3455778765555543  578999999999998887642221    22345554  55676554  89999999986 55


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC-----CCeEEEEEccCCcEEEeee
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-----GGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~  220 (334)
                      .+..++   .+...   ...++++|+ .++++..++.|.++|.++.+.+..+.-..     ..+..+.|. +|+..+...
T Consensus        98 v~~~i~---~g~~~---g~glt~Dg~-~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~  169 (266)
T 2iwa_A           98 NIKNFT---HQMKD---GWGLATDGK-ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW  169 (266)
T ss_dssp             EEEEEE---CCSSS---CCEEEECSS-SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             EEEEEE---CCCCC---eEEEEECCC-EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence            555422   11111   233566777 55555578999999999988887775321     246788888 775444443


Q ss_pred             cCCCeEEEEEccCCCccceeecccc-----------cCCceEEEEecCCCceEE-eeecCCcEEEEeCCCC
Q psy2305         221 RKDCEIICWDLRNPGCILHTFPRQV-----------STNQRVYFDLTSCSNYLL-SGNTNGDLSIWNVNTS  279 (334)
Q Consensus       221 ~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~  279 (334)
                       .++.|.+.|..+ ++.+..+....           .......++|+|+++.++ ++...+++...++...
T Consensus       170 -~~~~V~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          170 -QTDCIARISAKD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             -TSSEEEEEETTT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             -CCCeEEEEECCC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence             688999999998 77766665321           113456899999986554 5556788988888764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.27  E-value=2e-08  Score=84.79  Aligned_cols=262  Identities=10%  Similarity=0.052  Sum_probs=152.6

Q ss_pred             CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEE
Q psy2305          12 DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHL   91 (334)
Q Consensus        12 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~i   91 (334)
                      ++..+++++.++.|..+|..+++.......                ...+..      ...+  .+..+++++.++.|..
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~----------------~~~~~~------~p~~--~~~~v~v~~~~g~l~~  157 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKV----------------AGEALS------RPVV--SDGLVLIHTSNGQLQA  157 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEEC----------------SSCCCS------CCEE--ETTEEEEECTTSEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeC----------------CCceEc------CCEE--ECCEEEEEcCCCeEEE
Confidence            455677888899999999999886521111                111100      0011  2346777888999999


Q ss_pred             EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc---c---e-EE
Q psy2305          92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN---I---V-SA  163 (334)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~---~---v-~~  163 (334)
                      +|..+|+.+..+..................  +..++.+. ++.+..+|..+ ++..............   .   + ..
T Consensus       158 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~  234 (376)
T 3q7m_A          158 LNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQ-GQMIWQQRISQATGSTEIDRLSDVDTT  234 (376)
T ss_dssp             EETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTT-CCEEEEEECCC-----------CCCCC
T ss_pred             EECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCC-CcEEEEEecccCCCCcccccccccCCC
Confidence            999999988776543211000000111222  34566665 89999999987 5554432110000000   0   0 01


Q ss_pred             EEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecc
Q psy2305         164 IAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR  243 (334)
Q Consensus       164 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~  243 (334)
                      ...  .+. .++.++.++.+..+|.++++.+.....  .....+..  ++..|+.++ .++.+..+|..+ ++.+.....
T Consensus       235 p~~--~~~-~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~-~~g~l~~~d~~t-G~~~w~~~~  305 (376)
T 3q7m_A          235 PVV--VNG-VVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVD-QNDRVMALTIDG-GVTLWTQSD  305 (376)
T ss_dssp             CEE--ETT-EEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEE-TTCCEEEEETTT-CCEEEEECT
T ss_pred             cEE--ECC-EEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEc-CCCeEEEEECCC-CcEEEeecc
Confidence            111  133 677788899999999999988766542  23444444  356788888 799999999987 665555441


Q ss_pred             cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccce-eeeccCCCcccceeeE
Q psy2305         244 QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG-VRWKHHKFERDLLVAD  322 (334)
Q Consensus       244 ~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~s~~~~~~~~~l  322 (334)
                      .. .........  .+..|+.++.+|.|..+|..++            +.+.........+.. ...    .+    ..|
T Consensus       306 ~~-~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG------------~~~~~~~~~~~~~~~~~~~----~~----~~l  362 (376)
T 3q7m_A          306 LL-HRLLTSPVL--YNGNLVVGDSEGYLHWINVEDG------------RFVAQQKVDSSGFQTEPVA----AD----GKL  362 (376)
T ss_dssp             TT-TSCCCCCEE--ETTEEEEECTTSEEEEEETTTC------------CEEEEEECCTTCBCSCCEE----ET----TEE
T ss_pred             cC-CCcccCCEE--ECCEEEEEeCCCeEEEEECCCC------------cEEEEEecCCCcceeCCEE----EC----CEE
Confidence            11 111111111  2467778888999999999998            555544432333332 333    23    457


Q ss_pred             Eeeecceeee
Q psy2305         323 ATCSGQITNV  332 (334)
Q Consensus       323 ~t~~~d~~i~  332 (334)
                      +.++.||.++
T Consensus       363 ~v~~~~G~l~  372 (376)
T 3q7m_A          363 LIQAKDGTVY  372 (376)
T ss_dssp             EEEBTTSCEE
T ss_pred             EEEeCCCEEE
Confidence            7788888765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.26  E-value=6.3e-09  Score=81.28  Aligned_cols=192  Identities=7%  Similarity=0.018  Sum_probs=124.6

Q ss_pred             eeEEEEcCCCcEEEEeeCCC--eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC-cEE
Q psy2305           4 EEDVDEAPDGTCLLTNSNDN--HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT-SYF   80 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~-~~l   80 (334)
                      ...+.|+ ++.++.+.+.+|  .|+++|+.+++...              .+...  ......       .+.+++ ++.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~--------------~~~l~--~~~Fge-------Git~~g~~ly  100 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQ--------------QIELG--KRYFGE-------GISDWKDKIV  100 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEE--------------EEECC--TTCCEE-------EEEEETTEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEE--------------EEecC--Ccccee-------EEEEeCCEEE
Confidence            4678888 676666666665  89999999998763              22111  111110       012233 344


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc-
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK-  158 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~-  158 (334)
                      +..-.++.+.++|.++.+.+.++....        ....+++|++.|+.+. ++.|.++|..+ .+....+.....+.. 
T Consensus       101 ~ltw~~~~v~v~D~~t~~~~~ti~~~~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~~  171 (262)
T 3nol_A          101 GLTWKNGLGFVWNIRNLRQVRSFNYDG--------EGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEEL  171 (262)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEECSS--------CCCCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTEEC
T ss_pred             EEEeeCCEEEEEECccCcEEEEEECCC--------CceEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCccc
Confidence            444568899999999999999887532        1233446777777665 78899999987 555554322111222 


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC------------CCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH------------NGGITHLEFSSNGILLFSGARKDCEI  226 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~~d~~i  226 (334)
                      ..++.+.|. +|. +.+..-.+..|.+.|.++++.+..+...            ....+.|+|+|+++.|++.+  ..--
T Consensus       172 ~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG--K~Wp  247 (262)
T 3nol_A          172 PELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG--KLWP  247 (262)
T ss_dssp             CCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE--TTCS
T ss_pred             cccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC--CCCC
Confidence            345567776 676 6666667889999999999988776431            13568999999988888777  3334


Q ss_pred             EEEEcc
Q psy2305         227 ICWDLR  232 (334)
Q Consensus       227 ~iwd~~  232 (334)
                      ++|.++
T Consensus       248 ~~~ev~  253 (262)
T 3nol_A          248 KVFEIT  253 (262)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence            444443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.24  E-value=1.7e-08  Score=83.25  Aligned_cols=255  Identities=12%  Similarity=0.077  Sum_probs=141.5

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCC--Ccce---eeeeeeceeEEEEEEecccceecC-C
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRP--KLNY---TLKIKEGGIIYDYVWYPKTSSIDG-F   76 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~v~~~~~~~~~~~~s~-~   76 (334)
                      ...+++++++|++++++..++.|..|+..++.... +........  ....   ............       +++++ +
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~g-------i~~~~~~   91 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYD-------ISYNLQN   91 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEE-------EEEETTT
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCce-------EEEcCCC
Confidence            34678899999878888888999999887655431 000000000  0000   000000112344       44476 5


Q ss_pred             CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcC-CCCEEEEee------------------CCcEEE
Q psy2305          77 TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF------------------LSEVKI  137 (334)
Q Consensus        77 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------------------d~~i~i  137 (334)
                      +++++ +...+.|..+|..+++.. .+...........+..+++.+ +|++.++..                  ++.|..
T Consensus        92 g~l~v-~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           92 NQLYI-VDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TEEEE-EETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             CcEEE-EECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            65444 444445888887655432 222111100111468899999 998776542                  256777


Q ss_pred             EEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEe-ecCCeEEEEECCCCC--ceEeeccCCCCeEEEEEccCCc
Q psy2305         138 FSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALG-TYSKIIGLFSDSDGR--PLFFLKGHNGGITHLEFSSNGI  214 (334)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~  214 (334)
                      +|... + ....    ..........++++|+++ .|+.+ ...+.|..|++....  ....+....+ ...+++.++|+
T Consensus       170 ~d~~~-~-~~~~----~~~~~~~p~gia~~~dg~-~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~  241 (322)
T 2fp8_A          170 YDPST-K-ETTL----LLKELHVPGGAEVSADSS-FVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH  241 (322)
T ss_dssp             EETTT-T-EEEE----EEEEESCCCEEEECTTSS-EEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC
T ss_pred             EeCCC-C-EEEE----eccCCccCcceEECCCCC-EEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC
Confidence            88763 2 2221    111123456799999998 55554 556899999987532  1222221223 78899999998


Q ss_pred             EEEeeecC----------CCeEEEEEccCCCccceeeccccc--CCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         215 LLFSGARK----------DCEIICWDLRNPGCILHTFPRQVS--TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       215 ~l~~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      +.++.. .          .+.|..+|..  ++.+..+.....  ...+..+.+ .+++++++...++.|..+++...
T Consensus       242 l~va~~-~~~~~~~~~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          242 FWVSSS-EELDGNMHGRVDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEEEEE-EETTSSTTSCEEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred             EEEEec-CcccccccCCCccEEEEECCC--CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence            666554 3          3556777654  555555543211  123444544 46666666667888999998754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.21  E-value=2.7e-08  Score=81.46  Aligned_cols=225  Identities=10%  Similarity=0.015  Sum_probs=132.1

Q ss_pred             ccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CC--cEEEEEcCCCCC
Q psy2305          69 KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LS--EVKIFSTDRPGR  145 (334)
Q Consensus        69 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~--~i~i~d~~~~~~  145 (334)
                      ..++++++++++++-..++.|..||... +....+... .     .+..+++.++|+++++.. ..  .|..+|..+ ++
T Consensus        35 egia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~-~-----~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~  106 (306)
T 2p4o_A           35 ENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVE-G-----KVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GT  106 (306)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECS-S-----EEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SC
T ss_pred             ceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCC-C-----CceeEEEcCCCcEEEEeccCCcceEEEEcCCC-Ce
Confidence            3455688998777766788999999765 343333321 1     678999999999666553 32  366666554 33


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc-eEee---------ccCCCCeEEEEEccCCcE
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP-LFFL---------KGHNGGITHLEFSSNGIL  215 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~---------~~~~~~i~~~~~~~~~~~  215 (334)
                      .....  .. ........++..+++. .+++-..++.|+.+|..+++. +...         ...-.....+  +|+++.
T Consensus       107 ~~~~~--~~-~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~  180 (306)
T 2p4o_A          107 VETLL--TL-PDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF  180 (306)
T ss_dssp             EEEEE--EC-TTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred             EEEEE--eC-CCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence            32210  11 1122334556556554 555544688999999765421 1100         0111234556  888887


Q ss_pred             EEeeecCCCeEEEEEccCCCcc--ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccc
Q psy2305         216 LFSGARKDCEIICWDLRNPGCI--LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEP  293 (334)
Q Consensus       216 l~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  293 (334)
                      |+++....+.|..+++...+..  ...+..   ......++++++|+++++....+.|.+++.. ++.          ..
T Consensus       181 lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~----------~~  246 (306)
T 2p4o_A          181 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST----------TI  246 (306)
T ss_dssp             EEEEETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE----------EE
T ss_pred             EEEEeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE----------EE
Confidence            7776646789999998742221  111111   1123347788999887777778899999976 311          11


Q ss_pred             cceecccccccceeeeccC---CCcccceeeEEeeec
Q psy2305         294 LYKFSAHQDCTNGVRWKHH---KFERDLLVADATCSG  327 (334)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~s---~~~~~~~~~l~t~~~  327 (334)
                      +..+........+++|  .   |++    +.|..++.
T Consensus       247 ~~~~~~~~~~p~~~a~--~g~~~d~----~~LyVt~~  277 (306)
T 2p4o_A          247 IAQAEQGVIGSTAVAF--GQTEGDC----TAIYVVTN  277 (306)
T ss_dssp             EECGGGTCTTEEEEEE--CCSTTTT----TEEEEEEC
T ss_pred             EeecccccCCceEEEE--ecccCCC----CEEEEECC
Confidence            2222222345789999  8   887    55555443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.17  E-value=1.2e-09  Score=95.03  Aligned_cols=196  Identities=10%  Similarity=-0.035  Sum_probs=129.4

Q ss_pred             eeEEEE-c-CCCcEEEEee------------------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEE
Q psy2305           4 EEDVDE-A-PDGTCLLTNS------------------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYD   63 (334)
Q Consensus         4 V~~~~~-s-p~~~~l~~~~------------------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   63 (334)
                      ...+++ + |+++++++++                  .++.+.+.|.++.+...              .+...  +    
T Consensus       136 phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~--------------qI~Vg--g----  195 (595)
T 1fwx_A          136 IHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW--------------QVLVS--G----  195 (595)
T ss_dssp             EEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEE--------------EEEES--S----
T ss_pred             CcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEE--------------EEEeC--C----
Confidence            457777 5 8999998884                  34578888988776542              11110  0    


Q ss_pred             EEEecccceecCCCcEEEEeeCCC--------------------------------------cEEEEeCCC--Cee-eEE
Q psy2305          64 YVWYPKTSSIDGFTSYFLCSSMYA--------------------------------------PIHLWDSVG--GEI-KAT  102 (334)
Q Consensus        64 ~~~~~~~~~~s~~~~~l~~~~~d~--------------------------------------~i~iwd~~~--~~~-~~~  102 (334)
                         .|..++++|+|+++++.+.+.                                      .|.+.|..+  ++. +..
T Consensus       196 ---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~  272 (595)
T 1fwx_A          196 ---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRY  272 (595)
T ss_dssp             ---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEE
T ss_pred             ---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEE
Confidence               233455577777777666432                                      477777776  444 444


Q ss_pred             EcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCC----------eeeeecccccccccceEEEEEcCCC
Q psy2305         103 YRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGR----------ECVSRNLKPWFRKNIVSAIAINPVH  170 (334)
Q Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~  170 (334)
                      +....      ...++.++|||++++++.  +.+|.++|+.+...          .+..    ...-......++|+|+|
T Consensus       273 Ipvg~------~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~----~v~vG~gP~h~aF~~dG  342 (595)
T 1fwx_A          273 IPIAN------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA----EPELGLGPLHTAFDGRG  342 (595)
T ss_dssp             EEEES------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE----CCBCCSCEEEEEECTTS
T ss_pred             EecCC------CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE----EcCCCCCcceEEECCCC
Confidence            44322      567999999999998775  89999999985110          0111    11223457889999999


Q ss_pred             CcEEEEeecCCeEEEEECCC----------CCceEeeccCCCCe-----EEEEEccCCcEEEeeecCC-CeE--------
Q psy2305         171 PDICALGTYSKIIGLFSDSD----------GRPLFFLKGHNGGI-----THLEFSSNGILLFSGARKD-CEI--------  226 (334)
Q Consensus       171 ~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~~d-~~i--------  226 (334)
                      . ..++...|+.|.+||+.+          .+.+.++..|-.+-     .++.++|||++|+++.+.. ..+        
T Consensus       343 ~-aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~  421 (595)
T 1fwx_A          343 N-AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKP  421 (595)
T ss_dssp             E-EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCC
T ss_pred             e-EEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCC
Confidence            4 778888899999999976          45666666554432     1234589999999987422 233        


Q ss_pred             ---EEEEccC
Q psy2305         227 ---ICWDLRN  233 (334)
Q Consensus       227 ---~iwd~~~  233 (334)
                         .++|+..
T Consensus       422 ~~~ql~dis~  431 (595)
T 1fwx_A          422 ENDQLIDISG  431 (595)
T ss_dssp             EEEEEEECSS
T ss_pred             CcceEEEcCC
Confidence               7889853

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.17  E-value=5.4e-08  Score=80.28  Aligned_cols=202  Identities=8%  Similarity=0.079  Sum_probs=122.0

Q ss_pred             cccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccc---------------cccccceeEEEEcC-CCCEEEEee
Q psy2305          68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQ---------------VDEVTHAYSLAFSL-DGNKIYAGF  131 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~-~~~~l~~~~  131 (334)
                      |..++++++++++.++..++.|..|+..+++.. .+.....               ......+..+++.+ +++++++..
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            455667889987888888899999998765443 2221000               00012578999998 665555544


Q ss_pred             CCcEEEEEcCCCCCeeeeeccccc-ccccceEEEEEcC-CCCcEEEEeec-----------------CCeEEEEECCCCC
Q psy2305         132 LSEVKIFSTDRPGRECVSRNLKPW-FRKNIVSAIAINP-VHPDICALGTY-----------------SKIIGLFSDSDGR  192 (334)
Q Consensus       132 d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~~~~~-----------------dg~i~i~d~~~~~  192 (334)
                      .+.+..+|...  ........... ........+++.+ +|. +.++-..                 ++.|..||..+++
T Consensus       100 ~~~i~~~d~~~--g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A          100 YYHLSVVGSEG--GHATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             TTEEEEECTTC--EECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             CCCEEEEeCCC--CEEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            55588888663  22221100111 1123578899999 897 5554322                 3779999987665


Q ss_pred             ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC-ccceeecccccCCceEEEEecCCCceEEeeec----
Q psy2305         193 PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG-CILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT----  267 (334)
Q Consensus       193 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~----  267 (334)
                      ...... .......++++|+|+.|+++....+.|.+|++.... .....+..  ... ...+++.++|++.++...    
T Consensus       177 ~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          177 TTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             EEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred             EEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecCcccc
Confidence            432222 122345799999999777664256899999987421 11122221  122 566889999987766544    


Q ss_pred             ------CCcEEEEeCC
Q psy2305         268 ------NGDLSIWNVN  277 (334)
Q Consensus       268 ------dg~i~iwd~~  277 (334)
                            .+.|..+|..
T Consensus       253 ~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          253 NMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             STTSCEEEEEEEECTT
T ss_pred             cccCCCccEEEEECCC
Confidence                  4668888865

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.14  E-value=1.3e-06  Score=72.68  Aligned_cols=199  Identities=13%  Similarity=0.007  Sum_probs=120.9

Q ss_pred             eEEEEEEecccceecCCCcE-EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEE
Q psy2305          60 IIYDYVWYPKTSSIDGFTSY-FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVK  136 (334)
Q Consensus        60 ~v~~~~~~~~~~~~s~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~  136 (334)
                      ....++|       ++.+.. +.+-...+.|..+++..+.....+.....     ....+++.+.+..|+.+ . .+.|.
T Consensus        74 ~~~~l~~-------d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-----~p~glavd~~~g~ly~~d~~~~~I~  141 (349)
T 3v64_C           74 NAIALDF-------HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE-----SPGGLAVDWVHDKLYWTDSGTSRIE  141 (349)
T ss_dssp             CEEEEEE-------ETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-----CCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             ceEEEEE-------eccccEEEEEeccCCceEEEecCCCCceEEEeCCCC-----CccEEEEecCCCeEEEEcCCCCeEE
Confidence            3455565       544444 44545667899999876544333322111     45789999876666644 3 68899


Q ss_pred             EEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC-CeEEEEECCCCCceEee-ccCCCCeEEEEEccCCc
Q psy2305         137 IFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-KIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGI  214 (334)
Q Consensus       137 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~  214 (334)
                      +.+++.  .....   .....-.....++++|.+..++.+-... +.|..+++... ....+ ...-.....++++|++.
T Consensus       142 ~~~~dG--~~~~~---l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~  215 (349)
T 3v64_C          142 VANLDG--AHRKV---LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGR  215 (349)
T ss_dssp             EEETTS--CSCEE---EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTT
T ss_pred             EEcCCC--CceEE---EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCC
Confidence            999874  32221   1222334578999999766245554444 78999997543 33333 22334578999999777


Q ss_pred             EEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         215 LLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      .|+.+....+.|..+|+..  .....+... .......+++ ..+.++++-...+.|..++..+++
T Consensus       216 ~lY~aD~~~~~I~~~~~dG--~~~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          216 RMYWVDAKHHVIERANLDG--SHRKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EEEEEETTTTEEEEEETTS--CSCEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEECCCCEEEEEeCCC--CceEEEEeC-CCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence            7777663678899999874  222332211 1234556666 345555555567888888865553

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.13  E-value=8.3e-07  Score=75.03  Aligned_cols=228  Identities=13%  Similarity=-0.002  Sum_probs=134.6

Q ss_pred             EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC-CcEEEEeeCCCcEEEEe
Q psy2305          15 CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF-TSYFLCSSMYAPIHLWD   93 (334)
Q Consensus        15 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~-~~~l~~~~~d~~i~iwd   93 (334)
                      +|+.+. ...|+.+++......              ..+.  .......++|       ++. +.++++-...+.|..++
T Consensus        89 ~l~~~~-~~~I~~i~~~~~~~~--------------~~~~--~~~~~~gl~~-------d~~~~~ly~~D~~~~~I~r~~  144 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHRSEYT--------------LLLN--NLENAIALDF-------HHRRELVFWSDVTLDRILRAN  144 (386)
T ss_dssp             EEEEEC-BSCEEEECTTSCCCE--------------EEEC--SCSCEEEEEE-------ETTTTEEEEEETTTTEEEEEE
T ss_pred             eeEeec-CccceeeccCCCcEE--------------EEec--CCCccEEEEE-------ecCCCeEEEEeCCCCcEEEEe
Confidence            344333 345777787765543              1111  1233556666       544 44445545667899999


Q ss_pred             CCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCC
Q psy2305          94 SVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHP  171 (334)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  171 (334)
                      +..+.....+.....     ....+++.+.+..|+.. . .+.|.+.+++.  .....   ...........++++|.+.
T Consensus       145 ~~g~~~~~~~~~~~~-----~p~glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~~~---l~~~~l~~P~giavdp~~g  214 (386)
T 3v65_B          145 LNGSNVEEVVSTGLE-----SPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKV---LLWQSLEKPRAIALHPMEG  214 (386)
T ss_dssp             TTSCCEEEEECSSCS-----CCCCEEEETTTTEEEEEETTTTEEEECBTTS--CSCEE---EECSSCSCEEEEEEETTTT
T ss_pred             cCCCCcEEEEeCCCC-----CccEEEEEeCCCeEEEEcCCCCeEEEEeCCC--CceEE---eecCCCCCCcEEEEEcCCC
Confidence            876544333332111     45688999876666644 3 67888888873  33221   1222335678999999777


Q ss_pred             cEEEEeecC-CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCce
Q psy2305         172 DICALGTYS-KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR  250 (334)
Q Consensus       172 ~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  250 (334)
                      .++++-... +.|..+++............-.....|+++|++..|+.+....+.|..+|+..  .....+... .....
T Consensus       215 ~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~-~~~~P  291 (386)
T 3v65_B          215 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG--SHRKAVISQ-GLPHP  291 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS--CSCEEEECS-SCSSE
T ss_pred             eEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC--CeeEEEEEC-CCCCc
Confidence            244444444 78999997644333333333445789999987777776653678899998874  222333221 12345


Q ss_pred             EEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         251 VYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       251 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      ..+++ ..+.++++-...+.|..++..+++
T Consensus       292 ~giav-~~~~ly~td~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          292 FAITV-FEDSLYWTDWHTKSINSANKFTGK  320 (386)
T ss_dssp             EEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence            56666 345555666667889988866653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.12  E-value=3e-07  Score=73.60  Aligned_cols=220  Identities=10%  Similarity=0.042  Sum_probs=129.4

Q ss_pred             eeEEEEcCCCcEEEEe-eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE-EE
Q psy2305           4 EEDVDEAPDGTCLLTN-SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY-FL   81 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~-l~   81 (334)
                      +.+++|+|++..|+.+ ..++.|.+++..+....              ..+.. ....       |..+++++++.. ++
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--------------~~~~~-~~~~-------p~~ia~d~~~~~lyv   95 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--------------TIIRQ-DLGS-------PEGIALDHLGRTIFW   95 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--------------EEECT-TCCC-------EEEEEEETTTTEEEE
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--------------EEEEC-CCCC-------ccEEEEEecCCeEEE
Confidence            4588999976655544 46789999998765432              11110 1112       334555776544 44


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee----CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +-...+.|.++++........... . ..   ....++++|++..|+.+.    .+.|..++++.  .....   .....
T Consensus        96 ~d~~~~~I~~~~~~g~~~~~~~~~-~-~~---~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg--~~~~~---~~~~~  165 (267)
T 1npe_A           96 TDSQLDRIEVAKMDGTQRRVLFDT-G-LV---NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG--TNRRI---LAQDN  165 (267)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECS-S-CS---SEEEEEEETTTTEEEEEECCSSSCEEEEEETTS--CCCEE---EECTT
T ss_pred             EECCCCEEEEEEcCCCCEEEEEEC-C-CC---CccEEEEeeCCCEEEEEECCCCCcEEEEEecCC--CCcEE---EEECC
Confidence            545567899999864332222221 1 11   568999999766666443    35788888763  32221   11122


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI  237 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~  237 (334)
                      ......++++|++..++++-...+.|..+|+........+.. ......++..  +..|+.+....+.|..+|..+ ++.
T Consensus       166 ~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~-g~~  241 (267)
T 1npe_A          166 LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI-SKE  241 (267)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTT-TEE
T ss_pred             CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCC-CCc
Confidence            345789999998773455555678999999875443333332 2334567654  455665553578999999987 666


Q ss_pred             ceeecccccCCceEEEEecCCCc
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCSN  260 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~  260 (334)
                      +..+.... ......+++.|++.
T Consensus       242 ~~~i~~g~-~~~p~gi~~~~~~~  263 (267)
T 1npe_A          242 MDTFHPHK-QTRLYGITIALSQC  263 (267)
T ss_dssp             EEEECCSS-CCCCCCEEEECSCC
T ss_pred             eEEEcccc-ccccceeeecCccC
Confidence            66664321 11244566667654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.12  E-value=4.2e-08  Score=76.67  Aligned_cols=182  Identities=10%  Similarity=0.005  Sum_probs=119.8

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      ...+.|+ ++.+..+.+.+|.|+++|+.+++...              .+ .....---.+..       . .+++.+..
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~--------------~~-l~~~~FgeGit~-------~-g~~Ly~lt  112 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVW--------------ME-RLGNIFAEGLAS-------D-GERLYQLT  112 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSE--------------EE-ECTTCCEEEEEE-------C-SSCEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEe--------------EE-CCCCcceeEEEE-------e-CCEEEEEE
Confidence            4577887 45666777788899999999998763              22 111000011221       2 23444445


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccc-cccce
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWF-RKNIV  161 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~v  161 (334)
                      -.++.+.++|.++.+.+.++.....      -+.++  +|++.|+.+. ++.|.++|..+ .+....+.....+ .-..+
T Consensus       113 w~~~~v~V~D~~Tl~~~~ti~~~~e------GwGLt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~l  183 (268)
T 3nok_A          113 WTEGLLFTWSGMPPQRERTTRYSGE------GWGLC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQPVELI  183 (268)
T ss_dssp             SSSCEEEEEETTTTEEEEEEECSSC------CCCEE--EETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCE
T ss_pred             ccCCEEEEEECCcCcEEEEEeCCCc------eeEEe--cCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcccccc
Confidence            5688999999999999998875321      13443  6788888765 88999999887 5555543221111 11245


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC-------------CCCeEEEEEccCCcEEEeee
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-------------NGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~  220 (334)
                      +.+.|. +|. +.+....+..|.+.|.++++.+..+...             ..-.+.|+|+|+++.|++.+
T Consensus       184 NeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          184 NELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            677877 666 6666657889999999999988776421             13568999999877776665

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.10  E-value=1.6e-08  Score=91.81  Aligned_cols=277  Identities=11%  Similarity=-0.041  Sum_probs=148.8

Q ss_pred             EEEEcC-CCcEEEEeeCCC-----------eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEeccccee
Q psy2305           6 DVDEAP-DGTCLLTNSNDN-----------HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSI   73 (334)
Q Consensus         6 ~~~~sp-~~~~l~~~~~d~-----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   73 (334)
                      ++++.| +|+.++.|+.+.           .+.+||..+++...            ...+...+.....       ..++
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~------------~~~~~~~~~~~~~-------~~~~  250 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD------------RTVTVTKHDMFCP-------GISM  250 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC------------CEEEECSCCCSSC-------EEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe------------CcccCCCCCCccc-------cccC
Confidence            566777 888888887542           68889998877541            0111111111111       1234


Q ss_pred             cCCCcEEEEeeC-CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--C-----CcEEEEEcCCCCC
Q psy2305          74 DGFTSYFLCSSM-YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--L-----SEVKIFSTDRPGR  145 (334)
Q Consensus        74 s~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-----~~i~i~d~~~~~~  145 (334)
                      ..++++++.|+. +..+.+||..+++....-.....    ..-.+++..++++.++.|+  +     ..+.+||..+ . 
T Consensus       251 ~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~----R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t-~-  324 (656)
T 1k3i_A          251 DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA----RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS-K-  324 (656)
T ss_dssp             CTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC----CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT-T-
T ss_pred             CCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcc----ccccceEEecCCeEEEEeCcccCCcccccceEeCCCC-C-
Confidence            678999999884 45899999987765433221111    1224667778899888765  3     5789999985 2 


Q ss_pred             eeeeeccc-ccccccceEEEEEcCCCCcEEEEeecCC---------eEEEEECCCCCceEeeccCC---------CCeEE
Q psy2305         146 ECVSRNLK-PWFRKNIVSAIAINPVHPDICALGTYSK---------IIGLFSDSDGRPLFFLKGHN---------GGITH  206 (334)
Q Consensus       146 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~---------~~i~~  206 (334)
                      .....+.. .......-....+..++. .++.|+.+|         .+..||..+..-......+.         ..-.+
T Consensus       325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~a  403 (656)
T 1k3i_A          325 TWTSLPNAKVNPMLTADKQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA  403 (656)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred             cceeCCCccccccccccccceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCce
Confidence            22211000 000000000011234444 555555443         56788887765333222111         12234


Q ss_pred             EEEcc-CCcEEEeeecCCC-----------eEEEEEccCCCccceeec-ccc-cCCceEEEEecCCCceEEeeecC----
Q psy2305         207 LEFSS-NGILLFSGARKDC-----------EIICWDLRNPGCILHTFP-RQV-STNQRVYFDLTSCSNYLLSGNTN----  268 (334)
Q Consensus       207 ~~~~~-~~~~l~~~~~~d~-----------~i~iwd~~~~~~~~~~~~-~~~-~~~~~~~~~~s~~~~~l~~~~~d----  268 (334)
                      +.|.. +++.++.|+ .++           .+.+||..+ ..- .... ... ......++...|++++++.|+.+    
T Consensus       404 v~~~~~~~~i~v~GG-~~~~~~~~~~~~~~~v~~yd~~~-~~W-~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~  480 (656)
T 1k3i_A          404 VMYDAVKGKILTFGG-SPDYQDSDATTNAHIITLGEPGT-SPN-TVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP  480 (656)
T ss_dssp             EEEETTTTEEEEECC-BSSSSSSBCCCCEEEEECCSTTS-CCE-EEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred             EeccCCCCeEEEEeC-CCCCCCCCcCCcceEEEcCCCCC-CCe-eEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC
Confidence            44543 677777777 432           577777765 221 1111 111 11112234456899999999864    


Q ss_pred             -------CcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeec
Q psy2305         269 -------GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       269 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                             ..+.+||..+.+          |..+..+...........+  .|++    ++++.||.
T Consensus       481 ~~~~~~~~~v~~ydp~t~~----------W~~~~~~~~~R~~hs~a~l--l~dg----~v~v~GG~  530 (656)
T 1k3i_A          481 FEDSTPVFTPEIYVPEQDT----------FYKQNPNSIVRVYHSISLL--LPDG----RVFNGGGG  530 (656)
T ss_dssp             TCCCSBCCCCEEEEGGGTE----------EEECCCCSSCCCTTEEEEE--CTTS----CEEEEECC
T ss_pred             cCCCCcccceEEEcCCCCc----------eeecCCCCCccccccHhhc--CCCc----EEEecCCC
Confidence                   468899987752          1222222222222234556  7899    99999885

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.10  E-value=2e-07  Score=72.21  Aligned_cols=193  Identities=12%  Similarity=0.077  Sum_probs=121.8

Q ss_pred             eeEEEEcCCCcEEEEeeCC--CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           4 EEDVDEAPDGTCLLTNSND--NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d--~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ...+.|++ +.++.+.+.+  ..|+.+|+.+++...              .+......---.+..       . ++++..
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~--------------~~~l~~~~fgeGi~~-------~-~~~ly~   79 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQ--------------RAEVPPPYFGAGIVA-------W-RDRLIQ   79 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEE--------------EEECCTTCCEEEEEE-------E-TTEEEE
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEE--------------EEeCCCCcceeEEEE-------e-CCEEEE
Confidence            56788886 5555555554  489999999998763              221111000011111       1 344455


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc-c
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK-N  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~-~  159 (334)
                      ..-.++.+.++|.++.+.+.++.....      -+.++  +++..|+.+. ++.|.++|..+ .+....+.+...+.. .
T Consensus        80 ltw~~~~v~v~D~~tl~~~~ti~~~~~------Gwglt--~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~~~  150 (243)
T 3mbr_X           80 LTWRNHEGFVYDLATLTPRARFRYPGE------GWALT--SDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRPLD  150 (243)
T ss_dssp             EESSSSEEEEEETTTTEEEEEEECSSC------CCEEE--ECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTEECC
T ss_pred             EEeeCCEEEEEECCcCcEEEEEeCCCC------ceEEe--eCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCcccc
Confidence            556788999999999999998875331      13444  5677777665 88999999987 555544322111111 3


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC-------------CCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-------------NGGITHLEFSSNGILLFSGARKDCEI  226 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~~d~~i  226 (334)
                      .++.+.+. +|+ +++..-.+..|.+.|.++++.+..+...             ..-.+.|+++|+++.|++.+  ..--
T Consensus       151 ~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG--K~wp  226 (243)
T 3mbr_X          151 NLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG--KRWP  226 (243)
T ss_dssp             CEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE--TTCS
T ss_pred             cceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC--CCCC
Confidence            45667766 665 5655556889999999999988776411             13568999999888777776  2333


Q ss_pred             EEEEcc
Q psy2305         227 ICWDLR  232 (334)
Q Consensus       227 ~iwd~~  232 (334)
                      ++|.++
T Consensus       227 ~~~~v~  232 (243)
T 3mbr_X          227 MLYEIR  232 (243)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            444443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.10  E-value=2.1e-08  Score=78.33  Aligned_cols=179  Identities=9%  Similarity=0.004  Sum_probs=119.0

Q ss_pred             ceecCCCcEEEEeeCCC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCe
Q psy2305          71 SSIDGFTSYFLCSSMYA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRE  146 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~  146 (334)
                      +.|+ ++.++.+.+.+|  .|+++|+++++.+..+....      ........+++..|....  ++.+.+||..+ .+.
T Consensus        48 L~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~------~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t-~~~  119 (262)
T 3nol_A           48 FFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK------RYFGEGISDWKDKIVGLTWKNGLGFVWNIRN-LRQ  119 (262)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT------TCCEEEEEEETTEEEEEESSSSEEEEEETTT-CCE
T ss_pred             EEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC------ccceeEEEEeCCEEEEEEeeCCEEEEEECcc-CcE
Confidence            4456 667777777665  89999999999988876533      333333344466666554  89999999987 565


Q ss_pred             eeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC-----CCeEEEEEccCCcEEEeeec
Q psy2305         147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-----GGITHLEFSSNGILLFSGAR  221 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~  221 (334)
                      +..++.  .+     ....++++++ .|+....++.|.++|..+.+.+.++.-..     ..++.+.|. +|+..+..- 
T Consensus       120 ~~ti~~--~~-----eG~glt~dg~-~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w-  189 (262)
T 3nol_A          120 VRSFNY--DG-----EGWGLTHNDQ-YLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW-  189 (262)
T ss_dssp             EEEEEC--SS-----CCCCEEECSS-CEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET-
T ss_pred             EEEEEC--CC-----CceEEecCCC-EEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc-
Confidence            554321  11     1223345676 55555567899999999998887765321     345568886 776444443 


Q ss_pred             CCCeEEEEEccCCCccceeeccc----------ccCCceEEEEecCCCceEEeeecC
Q psy2305         222 KDCEIICWDLRNPGCILHTFPRQ----------VSTNQRVYFDLTSCSNYLLSGNTN  268 (334)
Q Consensus       222 ~d~~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~l~~~~~d  268 (334)
                      .++.|.+.|.++ ++.+..+...          ........++|+|+++.|++.+..
T Consensus       190 ~~~~I~vIDp~t-G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          190 QTNKIVRIDPET-GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             TSSEEEEECTTT-CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             cCCeEEEEECCC-CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            688999999988 7766665532          112234679999988877776653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.09  E-value=3.4e-08  Score=89.64  Aligned_cols=271  Identities=13%  Similarity=0.125  Sum_probs=158.2

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC------C
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM------Y   86 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~------d   86 (334)
                      +..+++++.|+.|..+|..+++............           ...+.   ..|   .+ .++. ++++..      +
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~-----------~~~~~---~~P---~v-~~~~-v~vg~~~~~~~~~  177 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK-----------PYSIT---GAP---RV-VKGK-VIIGNGGAEYGVR  177 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS-----------SCBCC---SCC---EE-ETTE-EEECCBCTTTCCB
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC-----------cceec---CCC---EE-ECCE-EEEeCCCCCcCCC
Confidence            4568888889999999999998763222110000           00000   000   00 1443 444432      5


Q ss_pred             CcEEEEeCCCCeeeEEEcCcccccc--------------------------ccceeEEEEcCCCCEEEEee-CC------
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDE--------------------------VTHAYSLAFSLDGNKIYAGF-LS------  133 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~--------------------------~~~v~~~~~~~~~~~l~~~~-d~------  133 (334)
                      +.|..+|.++|+.+..+........                          ......+++.|+...++.+. ++      
T Consensus       178 g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~  257 (668)
T 1kv9_A          178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNRE  257 (668)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred             CEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccC
Confidence            8899999999999887753211000                          00112478888888887765 44      


Q ss_pred             -------------cEEEEEcCCCCCeeeeecccccccc-------cceEEEEEcCCCC--cEEEEeecCCeEEEEECCCC
Q psy2305         134 -------------EVKIFSTDRPGRECVSRNLKPWFRK-------NIVSAIAINPVHP--DICALGTYSKIIGLFSDSDG  191 (334)
Q Consensus       134 -------------~i~i~d~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~  191 (334)
                                   .|..+|..+ ++......  ...|.       .+.....+..+|+  ..++.++.+|.++++|.+++
T Consensus       258 ~~~~~~gd~l~~~~v~AlD~~t-G~~~W~~~--~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG  334 (668)
T 1kv9_A          258 VRSPGGGDNLYLSSILAIRPDT-GKLAWHYQ--VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG  334 (668)
T ss_dssp             HHSTTCCCCTTTTEEEEECTTT-CCEEEEEE--SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             CCCCCCCCceeeeeEEEEcCCC-CceeeEee--cCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC
Confidence                         488999987 66655321  12221       2222223333553  25888999999999999999


Q ss_pred             CceEeeccCC------------CCe------------------------EEEEEccCCcEEEeee---------------
Q psy2305         192 RPLFFLKGHN------------GGI------------------------THLEFSSNGILLFSGA---------------  220 (334)
Q Consensus       192 ~~~~~~~~~~------------~~i------------------------~~~~~~~~~~~l~~~~---------------  220 (334)
                      +.+...+...            .++                        ..++++|+...+++..               
T Consensus       335 ~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~  414 (668)
T 1kv9_A          335 KLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFV  414 (668)
T ss_dssp             CEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCC
T ss_pred             CEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccc
Confidence            8874332111            000                        1267777766655411               


Q ss_pred             --------------------cCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         221 --------------------RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       221 --------------------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                                          ..++.|..||+.+ ++.+.+.....   ......+...+.++++++.|+.++.||.+++ 
T Consensus       415 ~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~---~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG-  489 (668)
T 1kv9_A          415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKG-  489 (668)
T ss_dssp             CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTC-
T ss_pred             cccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCC---CCcCceeEeCCCEEEEECCcccchhhhhhcC-
Confidence                                0247899999988 77666654321   1111223346778888999999999999998 


Q ss_pred             CCCCCCccccccccceeccccccc-ceeeeccCCCcccceeeEEeee
Q psy2305         281 LPSSPYEESVQEPLYKFSAHQDCT-NGVRWKHHKFERDLLVADATCS  326 (334)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~s~~~~~~~~~l~t~~  326 (334)
                                 +.+..+....+.. .-+.+  ..++.   .+++.++
T Consensus       490 -----------~~l~~~~~~~~~~~~p~~~--~~~G~---~yva~~~  520 (668)
T 1kv9_A          490 -----------EALWQFEAQSGIVAAPMTF--ELAGR---QYVAIMA  520 (668)
T ss_dssp             -----------CEEEEEECSSCCCSCCEEE--EETTE---EEEEEEE
T ss_pred             -----------hhheEecCCCCcccCceEE--EECCE---EEEEEEe
Confidence                       5666665443221 33455  55661   3555554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.06  E-value=1.9e-06  Score=80.03  Aligned_cols=275  Identities=13%  Similarity=0.101  Sum_probs=165.3

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      |.++...++|.+.+ ++.++-|..|+..+++...              .........|.++..       .+++.+.+ +
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~--------------~~~~~~~~~i~~i~~-------d~~g~lwi-g  231 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEK--------------VIPILGTKQIQAILQ-------QSPTRIWV-A  231 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEE--------------CC----CCCEEEEEE-------EETTEEEE-E
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEE--------------ecCCCCCCeeEEEEE-------cCCCCEEE-E
Confidence            77888888886554 5555458889987766531              111112344655544       45666554 4


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCcc--ccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc----cccc
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYN--QVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK----PWFR  157 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~  157 (334)
                      +.++-+..||..+++.........  ..-....|.++...++|.+.+...+ -|.+||..+  .........    ..-.
T Consensus       232 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~--~~~~~~~~~~~~~~~l~  308 (795)
T 4a2l_A          232 TEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGT--DSFASYSSNPVENGSLS  308 (795)
T ss_dssp             EBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTT--TEEEEECCCTTSTTSCS
T ss_pred             ECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCC--CeEEEEecCCCCCCCCC
Confidence            444448899987776543322110  0111127999999999886665445 688898774  222221100    1112


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc-------CCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG-------HNGGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                      ...|.++...++|.  |..|+.++.|..|+..++... .+..       ....|.++...++|.+ ..|+ .++-|..||
T Consensus       309 ~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt-~~~Gl~~~~  383 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGT-NDGGLNLYN  383 (795)
T ss_dssp             SSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCE-EEEE-SSSCEEEEC
T ss_pred             CCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCE-EEEE-CCCCeEEEc
Confidence            35799999999986  666888888999987654332 2211       2356899999888864 4566 677799998


Q ss_pred             ccCCCccceeeccc-------ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceec-----
Q psy2305         231 LRNPGCILHTFPRQ-------VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS-----  298 (334)
Q Consensus       231 ~~~~~~~~~~~~~~-------~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----  298 (334)
                      ..+ +. ...+...       .....+.++...++|+.|..|+.++-|..||..+++.             ..+.     
T Consensus       384 ~~~-~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-------------~~~~~~~~~  448 (795)
T 4a2l_A          384 PIT-QR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-------------ENFNQRNSQ  448 (795)
T ss_dssp             TTT-CC-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-------------EEECTTTSC
T ss_pred             CCC-Cc-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-------------EEeecCCCC
Confidence            875 32 2222211       1235677888788888566677767799999887631             1111     


Q ss_pred             ccccccceeeeccCCCcccceeeEEeeecceee
Q psy2305         299 AHQDCTNGVRWKHHKFERDLLVADATCSGQITN  331 (334)
Q Consensus       299 ~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i  331 (334)
                      .....|.++..  .+++    .+.+... +|..
T Consensus       449 l~~~~v~~i~~--d~~g----~lwigt~-~Gl~  474 (795)
T 4a2l_A          449 LVNENVYAILP--DGEG----NLWLGTL-SALV  474 (795)
T ss_dssp             CSCSCEEEEEE--CSSS----CEEEEES-SCEE
T ss_pred             cCCCeeEEEEE--CCCC----CEEEEec-Ccee
Confidence            12346788888  7777    6544433 5543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.06  E-value=3.3e-06  Score=78.51  Aligned_cols=280  Identities=11%  Similarity=0.076  Sum_probs=165.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +.|.++...++|.+ -.|+.++-|..|+..++......... .       ... ......|.++..       +++++.|
T Consensus       357 ~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~-~-------~~~~~l~~~~v~~i~~-------d~~g~~l  420 (795)
T 4a2l_A          357 NVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQE-D-------ESARGIGSNNIKAVYV-------DEKKSLV  420 (795)
T ss_dssp             SSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC--------------CCSCSCEEEEEE-------ETTTTEE
T ss_pred             CeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCC-C-------CcccCCCCccEEEEEE-------cCCCCEE
Confidence            35889999888874 45677766999998876653100000 0       000 011245666655       5677746


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc---cccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK---PWFR  157 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~  157 (334)
                      ..|+.++-|..+|..+++... +...........|.++...++|.+.+... +-+..||..+ + ........   ....
T Consensus       421 Wigt~~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~-~-~~~~~~~~~~~~~~~  496 (795)
T 4a2l_A          421 YIGTHAGGLSILHRNSGQVEN-FNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQ-R-SFTTIEKEKDGTPVV  496 (795)
T ss_dssp             EEEETTTEEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTT-T-EEEECCBCTTCCBCC
T ss_pred             EEEeCcCceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCC-C-eEEEccccccccccC
Confidence            667776679999988776543 32111101112789999999888766555 5588899874 2 22221100   0112


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-------cCCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-------GHNGGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                      ...|.++...++|.  +..|+. +.|..||..+++.  .+.       .....|.++...++|++.+ ++ .. -+..||
T Consensus       497 ~~~i~~i~~d~~g~--lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT-~~-Gl~~~d  568 (795)
T 4a2l_A          497 SKQITTLFRDSHKR--LWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWV-GT-RE-GFYCFN  568 (795)
T ss_dssp             CCCEEEEEECTTCC--EEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEE-EE-SS-CEEEEE
T ss_pred             CceEEEEEECCCCC--EEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEE-Ee-CC-CceeEC
Confidence            35789999999987  444555 5688899876654  221       1345789999999887555 44 34 578888


Q ss_pred             ccCCCccceeeccc--ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc----cc
Q psy2305         231 LRNPGCILHTFPRQ--VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD----CT  304 (334)
Q Consensus       231 ~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i  304 (334)
                      ..+ .. ...+...  .....+.++...++|++.+++ . +-|..|+..+.             ....+....+    .+
T Consensus       569 ~~~-~~-~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~-------------~~~~~~~~dGl~~~~f  631 (795)
T 4a2l_A          569 EKD-KQ-IKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETE-------------KFRNFTESDGLQSNQF  631 (795)
T ss_dssp             TTT-TE-EEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTT-------------EEEEECGGGTCSCSCE
T ss_pred             CCC-Cc-EEEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCC-------------cEEEcCCcCCCccccC
Confidence            765 32 3333221  123457778788888776655 3 45788888764             2223322211    12


Q ss_pred             --ceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         305 --NGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       305 --~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                        .++..  .++|    . |..|+.+|.+.+
T Consensus       632 ~~~~~~~--~~~G----~-l~~g~~~Gl~~~  655 (795)
T 4a2l_A          632 NTASYCR--TSVG----Q-MYFGGINGITTF  655 (795)
T ss_dssp             EEEEEEE--CTTS----C-EEEEETTEEEEE
T ss_pred             ccCceeE--CCCC----e-EEEecCCceEEE
Confidence              35556  7777    4 566777787664

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.05  E-value=5e-09  Score=86.67  Aligned_cols=250  Identities=12%  Similarity=0.074  Sum_probs=143.3

Q ss_pred             EEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC
Q psy2305           7 VDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY   86 (334)
Q Consensus         7 ~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d   86 (334)
                      +....+| .|..++.++.|..|| .+++...              ... .....+.+       +...+++. |..++.+
T Consensus        25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~--------------~~~-~~~~~~~~-------~~~~~~g~-l~v~t~~   79 (330)
T 3hxj_A           25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKW--------------FFK-SGEIIECR-------PSIGKDGT-IYFGSDK   79 (330)
T ss_dssp             CEECTTS-CEECSSTTTTTEEEC-TTSCEEE--------------SSC-GGGEEEEC-------CEETTTTE-ECCSSCE
T ss_pred             ceEccCC-eEEEEcCCCEEEEEC-CCCcEEE--------------EEe-cCCCcccc-------eEEecCCc-EEEecCc
Confidence            3444455 466777788899999 7776541              111 11122222       33355665 4445444


Q ss_pred             CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEE
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIA  165 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (334)
                        |..+|. +++....+.....     ......+. ++ .|..+. ++.+..+|..  ++....    .......+.++.
T Consensus        80 --l~~~d~-~g~~~~~~~~~~~-----~~~~~~~~-~~-~l~v~t~~~~l~~~d~~--g~~~~~----~~~~~~~~~~~~  143 (330)
T 3hxj_A           80 --VYAINP-DGTEKWRFDTKKA-----IVSDFTIF-ED-ILYVTSMDGHLYAINTD--GTEKWR----FKTKKAIYATPI  143 (330)
T ss_dssp             --EEEECC-CGGGGGGSCC----------CCEEEE-TT-EEEEECTTSEEEEECTT--SCEEEE----EECSSCCCSCCE
T ss_pred             --EEEECC-CCcEEEEEECCCC-----cccCceEE-CC-EEEEEecCCEEEEEcCC--CCEEEE----EcCCCceeeeeE
Confidence              888886 6655433322111     11222233 44 455565 8899999987  444432    222334456677


Q ss_pred             EcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc
Q psy2305         166 INPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV  245 (334)
Q Consensus       166 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~  245 (334)
                      ..+++.  +..++.++.|..+|.. ++....+......+.++...+++..++ +  . +.+..+| .+ +.....+... 
T Consensus       144 ~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~--t-~~l~~~d-~~-g~~~~~~~~~-  213 (330)
T 3hxj_A          144 VSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-G--S-DKVYAIN-PD-GTEKWNFYAG-  213 (330)
T ss_dssp             ECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-E--S-SSEEEEC-TT-SCEEEEECCS-
T ss_pred             EcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-E--e-CEEEEEC-CC-CcEEEEEccC-
Confidence            777775  5567788999999988 877766665556677777877887544 3  2 7788898 44 5544444432 


Q ss_pred             cCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEee
Q psy2305         246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       246 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~  325 (334)
                       ...+.++...++|.+ ..++.++.|..+|.. +            +.+..+......+..+..  .+++    . |..+
T Consensus       214 -~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~~-g------------~~~~~~~~~~~~~~~~~~--~~~g----~-l~v~  271 (330)
T 3hxj_A          214 -YWTVTRPAISEDGTI-YVTSLDGHLYAINPD-G------------TEKWRFKTGKRIESSPVI--GNTD----T-IYFG  271 (330)
T ss_dssp             -SCCCSCCEECTTSCE-EEEETTTEEEEECTT-S------------CEEEEEECSSCCCSCCEE--CTTS----C-EEEE
T ss_pred             -CcceeceEECCCCeE-EEEcCCCeEEEECCC-C------------CEeEEeeCCCCccccceE--cCCC----e-EEEe
Confidence             233445566777754 445667788888753 3            333344433344555666  6566    4 4455


Q ss_pred             ecce
Q psy2305         326 SGQI  329 (334)
Q Consensus       326 ~~d~  329 (334)
                      +.+|
T Consensus       272 t~~g  275 (330)
T 3hxj_A          272 SYDG  275 (330)
T ss_dssp             CTTC
T ss_pred             cCCC
Confidence            5553

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.05  E-value=1.1e-06  Score=71.79  Aligned_cols=230  Identities=8%  Similarity=0.000  Sum_probs=132.0

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      ...++|+|+|+++++-..++.|..|+.......               .+.  ......       .++++++++++++.
T Consensus        34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~---------------~~~--~~~~p~-------gia~~~dG~l~vad   89 (306)
T 2p4o_A           34 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQI---------------HAT--VEGKVS-------GLAFTSNGDLVATG   89 (306)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCCEEE---------------EEE--CSSEEE-------EEEECTTSCEEEEE
T ss_pred             cceEEECCCCCEEEEeCCCCeEEEECCCCceEE---------------EEe--CCCCce-------eEEEcCCCcEEEEe
Confidence            568899999987776667889999987754221               111  122333       45558899866655


Q ss_pred             eCCC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCC-eeee-ecc----cc
Q psy2305          84 SMYA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGR-ECVS-RNL----KP  154 (334)
Q Consensus        84 ~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~-~~~~-~~~----~~  154 (334)
                      ....  .|..++..+++......... ..   ....++..+++..+++.. ++.|..+|... +. .+.. ...    ..
T Consensus        90 ~~~~~~~v~~~d~~~g~~~~~~~~~~-~~---~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~-~~~~v~~~~~~~~~~~~  164 (306)
T 2p4o_A           90 WNADSIPVVSLVKSDGTVETLLTLPD-AI---FLNGITPLSDTQYLTADSYRGAIWLIDVVQ-PSGSIWLEHPMLARSNS  164 (306)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEECTT-CS---CEEEEEESSSSEEEEEETTTTEEEEEETTT-TEEEEEEECGGGSCSST
T ss_pred             ccCCcceEEEEcCCCCeEEEEEeCCC-cc---ccCcccccCCCcEEEEECCCCeEEEEeCCC-CcEeEEEECCccccccc
Confidence            4322  46677877777544332211 11   334555566555455554 78888888763 21 1110 000    00


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCc--eEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRP--LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL  231 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~  231 (334)
                      ...-.....+  +|+++.++++-...+.|..|++.. ++.  ...+.. ......++++++|+++++.. ..+.|.++|.
T Consensus       165 ~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~-~~~~V~~~~~  240 (306)
T 2p4o_A          165 ESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATH-IYNSVVRIAP  240 (306)
T ss_dssp             TCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECB-TTCCEEEECT
T ss_pred             cCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeC-CCCeEEEECC
Confidence            1111234555  788873445555678999999864 321  122211 12345689999998766665 6888999987


Q ss_pred             cCCCccceeecccccCCceEEEEec---CCCceEEeeecC
Q psy2305         232 RNPGCILHTFPRQVSTNQRVYFDLT---SCSNYLLSGNTN  268 (334)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~l~~~~~d  268 (334)
                      .  ++...............+++|.   |+++.|+.++..
T Consensus       241 ~--G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          241 D--RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             T--CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             C--CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            5  4432211111123457788998   887777666543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.04  E-value=8.4e-08  Score=85.32  Aligned_cols=262  Identities=13%  Similarity=0.052  Sum_probs=151.2

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC------C
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM------Y   86 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~------d   86 (334)
                      +..+++++.|+.|..+|..+++...........           ....+.   -.|   .+ .++. +++++.      +
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~-----------~~~~~~---~~P---~v-~~g~-v~vg~~~~~~~~~  175 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPK-----------VGSTLT---QAP---FV-AKDT-VLMGCSGAELGVR  175 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGG-----------GTCBCC---SCC---EE-ETTE-EEEECBCGGGTCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCC-----------ccceec---cCC---EE-ECCE-EEEEecCCccCCC
Confidence            456788888999999999999876321110000           000110   000   00 1444 444443      7


Q ss_pred             CcEEEEeCCCCeeeEEEcCcccccc--------------------------------ccce-eEEEEcCCCCEEEEee-C
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDE--------------------------------VTHA-YSLAFSLDGNKIYAGF-L  132 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~--------------------------------~~~v-~~~~~~~~~~~l~~~~-d  132 (334)
                      +.|..+|.++|+.+..+........                                ...+ ..+++.++...++.+. +
T Consensus       176 g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~  255 (571)
T 2ad6_A          176 GAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGN  255 (571)
T ss_dssp             CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCC
T ss_pred             CEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCC
Confidence            8999999999999887764321100                                0000 2356677666666543 2


Q ss_pred             ----------------CcEEEEEcCCCCCeeeeeccccccc--------ccceEEEEEcCCCC--cEEEEeecCCeEEEE
Q psy2305         133 ----------------SEVKIFSTDRPGRECVSRNLKPWFR--------KNIVSAIAINPVHP--DICALGTYSKIIGLF  186 (334)
Q Consensus       133 ----------------~~i~i~d~~~~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~--~~l~~~~~dg~i~i~  186 (334)
                                      +.|..+|..+ ++......  ...|        ..++. +...++|+  ..++.++.+|.++++
T Consensus       256 ~~~~~~~~~~gd~~y~~~v~Ald~~t-G~~~W~~~--~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~l  331 (571)
T 2ad6_A          256 PAPWNETMRPGDNKWTMTIWGRDLDT-GMAKWGYQ--KTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTL  331 (571)
T ss_dssp             CSCSCGGGSCSCCTTTTEEEEEETTT-CCEEEEEE--SSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEE
T ss_pred             CccccCCccCCCceeEEEEEEEecCC-CcEEEEec--CCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEE
Confidence                            2588999987 66554321  1222        12221 22334663  267788899999999


Q ss_pred             ECCCCCceEeeccCC-------------CCe--------------------------EEEEEccCCcEEEeeec------
Q psy2305         187 SDSDGRPLFFLKGHN-------------GGI--------------------------THLEFSSNGILLFSGAR------  221 (334)
Q Consensus       187 d~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~~------  221 (334)
                      |.++++.+.......             .++                          ..++++|+..+|++.+.      
T Consensus       332 D~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~  411 (571)
T 2ad6_A          332 NRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDW  411 (571)
T ss_dssp             ETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred             ECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccc
Confidence            999998876653211             111                          23578887777766531      


Q ss_pred             ------------------------------CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcE
Q psy2305         222 ------------------------------KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDL  271 (334)
Q Consensus       222 ------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i  271 (334)
                                                    .++.+..||+.+ ++.+.++....   ......+...+..++.++.||.|
T Consensus       412 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t-G~~~W~~~~~~---~~~~~~~~t~gg~v~~g~~dg~l  487 (571)
T 2ad6_A          412 EPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT-GKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYL  487 (571)
T ss_dssp             EECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT-CCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEE
T ss_pred             cccccccccCCccccccceeccCccccCCCCCCeEEEEECCC-CCEEEEecCCC---CccceeEEECCCEEEEEcCCCeE
Confidence                                          247889999887 66666554321   11111112345667778899999


Q ss_pred             EEEeCCCCCCCCCCCccccccccceeccccc-ccceeeeccCCCc
Q psy2305         272 SIWNVNTSNLPSSPYEESVQEPLYKFSAHQD-CTNGVRWKHHKFE  315 (334)
Q Consensus       272 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~s~~~  315 (334)
                      +.+|.+++            +.+..+..... .-.-+.+  ..++
T Consensus       488 ~a~D~~tG------------~~lw~~~~~~~~~~~p~~~--~~~G  518 (571)
T 2ad6_A          488 KALDNKDG------------KELWNFKMPSGGIGSPMTY--SFKG  518 (571)
T ss_dssp             EEEETTTC------------CEEEEEECSSCCCSCCEEE--EETT
T ss_pred             EEEECCCC------------CEEEEEeCCCCcEeeeEEE--EECC
Confidence            99999998            56655553322 1223455  5777

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.02  E-value=3.9e-07  Score=83.98  Aligned_cols=194  Identities=9%  Similarity=0.021  Sum_probs=109.1

Q ss_pred             ceeEEEEc-CCCcEEEEeeC-C----CeEEEEECCCC-CceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305           3 IEEDVDEA-PDGTCLLTNSN-D----NHLRTFDLPSE-LHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         3 ~V~~~~~s-p~~~~l~~~~~-d----~~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~   75 (334)
                      .+...+|| |||++||.+.. +    .+|+++|+.++ +...             ..+.    ..       ...++|+|
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------------~~~~----~~-------~~~~~Wsp  230 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------------DKVS----GT-------NGEIVWGP  230 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-------------CCEE----EE-------CSCCEECS
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-------------cccc----Cc-------eeeEEEec
Confidence            36778999 99998885532 2    35999999988 5320             0111    11       12355688


Q ss_pred             CCcEEEEeeCC-----CcEEEEeCCCCee--eEEEcCccccccccceeEEEEcCCCCEEEEee----CCcEEEEEcCCCC
Q psy2305          76 FTSYFLCSSMY-----APIHLWDSVGGEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----LSEVKIFSTDRPG  144 (334)
Q Consensus        76 ~~~~l~~~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~i~d~~~~~  144 (334)
                      |++.|+....+     ..|.++++.++..  ...+..... .   ....+.|+|||++|+...    ...|.++|+..+.
T Consensus       231 Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~-~---~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~  306 (751)
T 2xe4_A          231 DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNP-L---FSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN  306 (751)
T ss_dssp             STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCT-T---CEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred             CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCC-c---eEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence            99888877655     2578888877642  223322111 1   456889999999988442    3568888887532


Q ss_pred             Cee--eeecccccccccceEEEEEcCCCCcEEEEeecC----CeEEEEECCCCCceEe-eccCCC--CeEEEEEccCCcE
Q psy2305         145 REC--VSRNLKPWFRKNIVSAIAINPVHPDICALGTYS----KIIGLFSDSDGRPLFF-LKGHNG--GITHLEFSSNGIL  215 (334)
Q Consensus       145 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~  215 (334)
                      ...  ..   ...........+.|+..+. +++....+    ..|..+|+.++..... +..+..  .+..+.+.  +..
T Consensus       307 ~~~~~~~---l~~~~~~~~~s~~~~~g~~-l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~  380 (751)
T 2xe4_A          307 AHNTLEI---VRPREKGVRYDVQMHGTSH-LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNY  380 (751)
T ss_dssp             TCCCEEE---SSCCCTTCCEEEEEETTTE-EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSE
T ss_pred             CCceeEE---eecCCCCceEEEeeeeCCE-EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCE
Confidence            122  21   2233344555666554443 44544433    3677788765322222 323333  34445544  455


Q ss_pred             EEeeecCCCeEEEEE
Q psy2305         216 LFSGARKDCEIICWD  230 (334)
Q Consensus       216 l~~~~~~d~~i~iwd  230 (334)
                      |+...+.++..++|-
T Consensus       381 lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          381 LVVAGRRAGLTRIWT  395 (751)
T ss_dssp             EEEEEEETTEEEEEE
T ss_pred             EEEEEEeCCEEEEEE
Confidence            544433677655443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.99  E-value=1.1e-07  Score=74.30  Aligned_cols=181  Identities=8%  Similarity=-0.062  Sum_probs=116.8

Q ss_pred             ceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC
Q psy2305         114 HAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR  192 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  192 (334)
                      ....+.|+. +.++.+.+ +|.|+.+|+.+ ++.....    ......-..+++.  ++.+....-.++.+.+||.++.+
T Consensus        56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~T-gkv~~~~----l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~  127 (268)
T 3nok_A           56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLES-AQPVWME----RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQ  127 (268)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEECCSSC-SSCSEEE----ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTE
T ss_pred             ccceEEEEC-CEEEEEcCCCCEEEEEECCC-CcEEeEE----CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCc
Confidence            456888873 33333444 78899999998 6666542    1111112235554  44255556678999999999999


Q ss_pred             ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCC---ceEEEEecCCCceEEeeecCC
Q psy2305         193 PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTN---QRVYFDLTSCSNYLLSGNTNG  269 (334)
Q Consensus       193 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~l~~~~~dg  269 (334)
                      .+.++..... -..+  .++++.|+.+. .++.|.++|..+ .+.+..+.-.....   .+..+.|. +|+..+....+.
T Consensus       128 ~~~ti~~~~e-GwGL--t~Dg~~L~vSd-Gs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~  201 (268)
T 3nok_A          128 RERTTRYSGE-GWGL--CYWNGKLVRSD-GGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS  201 (268)
T ss_dssp             EEEEEECSSC-CCCE--EEETTEEEEEC-SSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred             EEEEEeCCCc-eeEE--ecCCCEEEEEC-CCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence            9998874322 2334  46788888888 799999999988 56666555432222   23456665 777666665688


Q ss_pred             cEEEEeCCCCCCCCCCCccccccccceecc-------------cccccceeeeccCCCcccceeeEEeee
Q psy2305         270 DLSIWNVNTSNLPSSPYEESVQEPLYKFSA-------------HQDCTNGVRWKHHKFERDLLVADATCS  326 (334)
Q Consensus       270 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~s~~~~~~~~~l~t~~  326 (334)
                      .|.+.|.++++            .+..+..             ..+..+.++|  +|++    +.|...+
T Consensus       202 ~I~vIDp~TG~------------V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~--dp~~----~rlfVTG  253 (268)
T 3nok_A          202 DVLEIDPATGT------------VVGVIDASALTRAVAGQVTNPEAVLNGIAV--EPGS----GRIFMTG  253 (268)
T ss_dssp             EEEEECTTTCB------------EEEEEECHHHHHHHTTTCCCTTCCEEEEEE--CTTT----CCEEEEE
T ss_pred             eEEEEeCCCCc------------EEEEEECCCCcccccccccCcCCceEEEEE--cCCC----CEEEEeC
Confidence            99999999983            3333321             1235688999  9987    5444444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.98  E-value=7.1e-06  Score=67.33  Aligned_cols=228  Identities=13%  Similarity=-0.025  Sum_probs=134.0

Q ss_pred             EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-EEEEeeCCCcEEEEe
Q psy2305          15 CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-YFLCSSMYAPIHLWD   93 (334)
Q Consensus        15 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~l~~~~~d~~i~iwd   93 (334)
                      +|+.+.. ..|+..++.+.+..              ..+.  ......+++|       ++.++ ++++-...+.|..++
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~--------------~~~~--~~~~p~g~~~-------d~~~~~ly~~D~~~~~I~~~~   58 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYT--------------SLIP--NLRNVVALDT-------EVASNRIYWSDLSQRMICSTQ   58 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCE--------------EEEC--SCSSEEEEEE-------ETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEECC-CeEEEEECCCcceE--------------ehhc--CCCceEEEEE-------EeCCCEEEEEECCCCcEEEEE
Confidence            4444443 45889999887654              1221  1233455555       65544 445555568899999


Q ss_pred             CCC---Cee-eEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEc
Q psy2305          94 SVG---GEI-KATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN  167 (334)
Q Consensus        94 ~~~---~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (334)
                      +..   +.. ...+.....     .+..+++.+.+..|+.+ . .+.|.+++++  +.....   ...........++++
T Consensus        59 ~~g~~~~~~~~~~~~~~~~-----~p~glavd~~~~~ly~~d~~~~~I~~~~~~--g~~~~~---~~~~~~~~P~~iavd  128 (316)
T 1ijq_A           59 LDRAHGVSSYDTVISRDIQ-----APDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKT---LFRENGSKPRAIVVD  128 (316)
T ss_dssp             C--------CEEEECSSCS-----CCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEE---EEECTTCCEEEEEEE
T ss_pred             CCCCCCCcccEEEEeCCCC-----CcCEEEEeecCCeEEEEECCCCEEEEEeCC--CCceEE---EEECCCCCcceEEeC
Confidence            865   122 222221111     45789999766666544 3 7899999987  433322   122233467899999


Q ss_pred             CCCCcEEEEeecC-CeEEEEECCCCCceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecc-c
Q psy2305         168 PVHPDICALGTYS-KIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR-Q  244 (334)
Q Consensus       168 ~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-~  244 (334)
                      |.+..++++.... +.|..+++. ++....+ ...-.....++++|++..|+.+....+.|..+|+..  .....+.. .
T Consensus       129 p~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg--~~~~~~~~~~  205 (316)
T 1ijq_A          129 PVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDE  205 (316)
T ss_dssp             TTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECT
T ss_pred             CCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC--CceEEEeecC
Confidence            9766244443333 789988875 4433333 223346789999998877777664667899999874  33333322 1


Q ss_pred             ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         245 VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       245 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      ........+++. .+.++++-...+.|..++..+++
T Consensus       206 ~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          206 KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             CccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence            112334566664 35555666667889999886664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.98  E-value=6.5e-07  Score=79.72  Aligned_cols=277  Identities=13%  Similarity=0.074  Sum_probs=156.8

Q ss_pred             EEEcCCCcE----EEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           7 VDEAPDGTC----LLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         7 ~~~sp~~~~----l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      ++++|.+..    |++++.|+.|.-+|..+++..-........           ....+.+   .|   .+ .++. +++
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~-----------~~~~~~s---sP---~v-~~g~-V~v  171 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK-----------VGSTLTI---AP---YV-VKDK-VII  171 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG-----------GTCBCCS---CC---EE-ETTE-EEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCC-----------ccceeec---CC---EE-ECCE-EEE
Confidence            455444444    888888999999999999876321110000           0001100   00   01 1444 444


Q ss_pred             ee------CCCcEEEEeCCCCeeeEEEcCcccccc--------------------------------ccce-eEEEEcCC
Q psy2305          83 SS------MYAPIHLWDSVGGEIKATYRPYNQVDE--------------------------------VTHA-YSLAFSLD  123 (334)
Q Consensus        83 ~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~--------------------------------~~~v-~~~~~~~~  123 (334)
                      ++      .++.|.-+|.++|+.+..+........                                ...+ ..+++.++
T Consensus       172 g~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~  251 (599)
T 1w6s_A          172 GSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG  251 (599)
T ss_dssp             CCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT
T ss_pred             EecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC
Confidence            44      378999999999999877764321100                                0001 13566677


Q ss_pred             CCEEEEee-C----------------CcEEEEEcCCCCCeeeeecccccccc--------cceEEEEEc-CCCC--cEEE
Q psy2305         124 GNKIYAGF-L----------------SEVKIFSTDRPGRECVSRNLKPWFRK--------NIVSAIAIN-PVHP--DICA  175 (334)
Q Consensus       124 ~~~l~~~~-d----------------~~i~i~d~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~--~~l~  175 (334)
                      ...++.+. +                +.|..+|.++ ++..-..  ....|.        .++. +... .+|+  ..++
T Consensus       252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~T-G~~~W~~--q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~  327 (599)
T 1w6s_A          252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADT-GEAKFGY--QKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLT  327 (599)
T ss_dssp             TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTT-CCEEEEE--ESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEE
T ss_pred             CCEEEEeCCCCccccCcccCCCccccceEEEEeCCC-CceeeEe--ecCCCccccccCCCccEE-EeccccCCcEEEEEE
Confidence            77777654 4                3788999987 6655432  122221        1222 2222 4662  2677


Q ss_pred             EeecCCeEEEEECCCCCceEeeccCC-------------CCe--------------------------EEEEEccCCcEE
Q psy2305         176 LGTYSKIIGLFSDSDGRPLFFLKGHN-------------GGI--------------------------THLEFSSNGILL  216 (334)
Q Consensus       176 ~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~~~~~~~l  216 (334)
                      .++.+|.++++|.++++.+.......             .++                          ..++++|+..++
T Consensus       328 ~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~  407 (599)
T 1w6s_A          328 HPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELF  407 (599)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred             EECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEE
Confidence            78899999999999998876553111             111                          235677766655


Q ss_pred             Eeeec--------------------------------------CCCeEEEEEccCCCccceeecccccCCceEEEEecCC
Q psy2305         217 FSGAR--------------------------------------KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC  258 (334)
Q Consensus       217 ~~~~~--------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~  258 (334)
                      ++...                                      ..|.+..||+.+ ++.+.+.....   ....-.+...
T Consensus       408 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~t-G~~~W~~~~~~---~~~~g~~~ta  483 (599)
T 1w6s_A          408 FMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAIT-GDYKWEKMERF---AVWGGTMATA  483 (599)
T ss_dssp             EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTT-CCEEEEEEESS---CCCSBCEEET
T ss_pred             EEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCC-CCEEeEecCCC---CccCcceEec
Confidence            54320                                      136788888877 66555553211   1110011234


Q ss_pred             CceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccc-cceeeeccCCCcccceeeEEeeec
Q psy2305         259 SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDC-TNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       259 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                      +.+++.++.|+.++.||.+++            +.+.++....+. ..-+.|  ..+|.   +|+++.+.
T Consensus       484 gg~vf~gt~dg~l~A~D~~tG------------~~lW~~~l~~g~~~~P~~y--~~~G~---qyv~~~~G  536 (599)
T 1w6s_A          484 GDLVFYGTLDGYLKARDSDTG------------DLLWKFKIPSGAIGYPMTY--THKGT---QYVAIYYG  536 (599)
T ss_dssp             TTEEEEECTTSEEEEEETTTC------------CEEEEEECSSCCCSCCEEE--EETTE---EEEEEEEC
T ss_pred             CCEEEEECCCCeEEEEECCCC------------CEEEEeeCCCCcEeccEEE--EeCCE---EEEEEEcc
Confidence            667777899999999999999            566555443332 233666  67772   45555443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.98  E-value=9e-07  Score=75.90  Aligned_cols=155  Identities=10%  Similarity=0.031  Sum_probs=98.6

Q ss_pred             ecccceecC-CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CC----cEEEEE
Q psy2305          67 YPKTSSIDG-FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LS----EVKIFS  139 (334)
Q Consensus        67 ~~~~~~~s~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~----~i~i~d  139 (334)
                      .|..++++| ++..|.++...+.|+.+|+.++......... .     ....++|++++++|+.+.  ++    .+..++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~-~-----~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGL-S-----KVRTICWTHEADSMIITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCC-S-----CEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCC-C-----CcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence            467788897 4555666655588999999877655444321 1     678999999999666553  22    233344


Q ss_pred             cCCCCCeeeeecccccccccceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEccCCcEEE
Q psy2305         140 TDRPGRECVSRNLKPWFRKNIVSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSSNGILLF  217 (334)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~  217 (334)
                      ..  +......  .+. .......++++| ++. ++++-..++.|..++...+....... +.......++|+|+|++|+
T Consensus       212 ~~--g~~~~~~--~l~-~~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          212 RE--SGFKVIT--ELT-KGQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             GG--GTSCSEE--EEE-ECSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred             CC--Cceeeee--eec-cCCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence            33  2221100  111 123456789999 665 66666677899999987654322222 1223467899999999666


Q ss_pred             eeecCCCeEEEEEccC
Q psy2305         218 SGARKDCEIICWDLRN  233 (334)
Q Consensus       218 ~~~~~d~~i~iwd~~~  233 (334)
                      .+....+.|..++...
T Consensus       286 v~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          286 IVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEETTTTEEEEEEEET
T ss_pred             EEECCCCEEEEEeCCc
Confidence            6653678899988764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.98  E-value=2.8e-07  Score=83.63  Aligned_cols=206  Identities=14%  Similarity=0.110  Sum_probs=120.8

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW   92 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw   92 (334)
                      +..|++++.++.|.-+|..+++..-............  .   .....+      ...+++  .+..+++++.|+.|..+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~--~---~~~~~~------~~~~~~--~~~~v~v~~~dg~l~al  132 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKAR--T---SCCDAV------NRGVAL--WGDKVYVGTLDGRLIAL  132 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGG--G---CTTCSC------CCCCEE--EBTEEEEECTTSEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccc--c---ccccCC------ccceEE--ECCEEEEEcCCCEEEEE
Confidence            4467777788999999999998764322111000000  0   000000      000111  34567778889999999


Q ss_pred             eCCCCeeeEEEcCccccccccceeE-EEEcCCCCEEEEee-------CCcEEEEEcCCCCCeeeeecccc-c--------
Q psy2305          93 DSVGGEIKATYRPYNQVDEVTHAYS-LAFSLDGNKIYAGF-------LSEVKIFSTDRPGRECVSRNLKP-W--------  155 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~-------d~~i~i~d~~~~~~~~~~~~~~~-~--------  155 (334)
                      |.++|+.+..+......... .+.+ ..+ .++ .++++.       ++.|..+|..+ ++.+....... .        
T Consensus       133 D~~tG~~~W~~~~~~~~~~~-~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~p~~~~~~~  208 (668)
T 1kv9_A          133 DAKTGKAIWSQQTTDPAKPY-SITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADT-GKLAWRFYTVPGDPALPYEHP  208 (668)
T ss_dssp             ETTTCCEEEEEECSCTTSSC-BCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTT-CCEEEEEESSCCCTTSCCSSH
T ss_pred             ECCCCCEeeeeccCCCCCcc-eecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCC-CcEEEEecccCCCCCcccccc
Confidence            99999998877653211000 1111 011 134 444432       47899999987 66654321100 0        


Q ss_pred             ------------------ccccceEEEEEcCCCCcEEEEeecCC-------------------eEEEEECCCCCceEeec
Q psy2305         156 ------------------FRKNIVSAIAINPVHPDICALGTYSK-------------------IIGLFSDSDGRPLFFLK  198 (334)
Q Consensus       156 ------------------~~~~~v~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~  198 (334)
                                        ........+++.|+.. +++.+..++                   .|..+|.++++.+-.++
T Consensus       209 ~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~  287 (668)
T 1kv9_A          209 ELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ  287 (668)
T ss_dssp             HHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred             ccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence                              0111123478888887 888887666                   49999999999887775


Q ss_pred             c--CC-------CCeEEEEEccCCc---EEEeeecCCCeEEEEEccCCCccc
Q psy2305         199 G--HN-------GGITHLEFSSNGI---LLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       199 ~--~~-------~~i~~~~~~~~~~---~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      .  |.       .+.....+..+|+   .++.++ .+|.++++|..+ ++.+
T Consensus       288 ~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~t-G~~l  337 (668)
T 1kv9_A          288 VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTN-GKLI  337 (668)
T ss_dssp             SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTT-CCEE
T ss_pred             cCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCC-CCEe
Confidence            3  22       2333333334675   688888 899999999988 6655

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.96  E-value=2.7e-07  Score=71.50  Aligned_cols=176  Identities=10%  Similarity=-0.029  Sum_probs=114.2

Q ss_pred             ecCCCcEEEEeeCC--CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeee
Q psy2305          73 IDGFTSYFLCSSMY--APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECV  148 (334)
Q Consensus        73 ~s~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~  148 (334)
                      |++ +.++.+.+.+  ..|+.+|+++++.+..+....      ........+++..|....  ++.+.+||..+ .+.+.
T Consensus        28 ~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~------~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t-l~~~~   99 (243)
T 3mbr_X           28 YLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP------PYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT-LTPRA   99 (243)
T ss_dssp             EET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT------TCCEEEEEEETTEEEEEESSSSEEEEEETTT-TEEEE
T ss_pred             EEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC------CcceeEEEEeCCEEEEEEeeCCEEEEEECCc-CcEEE
Confidence            354 5566666654  489999999999988876543      223333333456666543  89999999987 55555


Q ss_pred             eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC-----CCeEEEEEccCCcEEEeeecCC
Q psy2305         149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN-----GGITHLEFSSNGILLFSGARKD  223 (334)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~~d  223 (334)
                      ..+.  .+   .-..++  +++. .|+.+..++.|.++|.++.+.+.++.-..     ..++.+.|. +|+..+..- .+
T Consensus       100 ti~~--~~---~Gwglt--~dg~-~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw-~s  169 (243)
T 3mbr_X          100 RFRY--PG---EGWALT--SDDS-HLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW-LT  169 (243)
T ss_dssp             EEEC--SS---CCCEEE--ECSS-CEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET-TT
T ss_pred             EEeC--CC---CceEEe--eCCC-EEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC-CC
Confidence            4321  11   112343  5666 55555568899999999998887775322     345677776 676554444 68


Q ss_pred             CeEEEEEccCCCccceeeccc-----------ccCCceEEEEecCCCceEEeeec
Q psy2305         224 CEIICWDLRNPGCILHTFPRQ-----------VSTNQRVYFDLTSCSNYLLSGNT  267 (334)
Q Consensus       224 ~~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~s~~~~~l~~~~~  267 (334)
                      ..|.+.|.++ ++.+..+...           ....-...++++|+++.|++.+.
T Consensus       170 ~~I~vIDp~t-G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          170 SRIARIDPAS-GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEEEEECTTT-CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CeEEEEECCC-CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            8999999998 7766665422           11234567999998777666654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.95  E-value=1.2e-05  Score=68.14  Aligned_cols=228  Identities=12%  Similarity=-0.041  Sum_probs=134.8

Q ss_pred             EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE-EEeeCCCcEEEEe
Q psy2305          15 CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF-LCSSMYAPIHLWD   93 (334)
Q Consensus        15 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l-~~~~~d~~i~iwd   93 (334)
                      +|+.+. ...|+..++......              ..+  .....+..++|       ++.+..| .+-...+.|..++
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~--------------~~~--~~~~~~~~l~~-------d~~~~~lywsD~~~~~I~~~~  140 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYT--------------SLI--PNLRNVVALDT-------EVASNRIYWSDLSQRMICSTQ  140 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCE--------------EEE--CSCSCEEEEEE-------ETTTTEEEEEETTTTEEEEEE
T ss_pred             eeEEec-cceeEEEccCCccee--------------Eec--cccCcceEEee-------eeccCceEEEecCCCeEEEEE
Confidence            444443 467888888876543              111  12344566666       5544444 4444567888888


Q ss_pred             CCCC----eeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEc
Q psy2305          94 SVGG----EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN  167 (334)
Q Consensus        94 ~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (334)
                      +...    .....+.....     .+..+++.+.+..|+.+ . .+.|.+.+++  +.....   .....-.....++++
T Consensus       141 ~~g~~~~~~~~~~~~~~~~-----~p~glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~~---l~~~~~~~P~~iavd  210 (400)
T 3p5b_L          141 LDRAHGVSSYDTVISRDIQ-----APDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKT---LFRENGSKPRAIVVD  210 (400)
T ss_dssp             C------CCCEEEECSSCS-----CEEEEEEETTTTEEEEEETTTTEEEEECTT--TCSEEE---EEECSSCCEEEEEEE
T ss_pred             cccCCCCCcceEEEeCCCC-----CcccEEEEecCCceEEEECCCCeEEEEeCC--CCceEE---EEeCCCCCcceEEEe
Confidence            7642    12222221111     57799999866666644 3 7889998887  433332   122233457899999


Q ss_pred             CCCCcEEEEee--cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecc-c
Q psy2305         168 PVHPDICALGT--YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR-Q  244 (334)
Q Consensus       168 ~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-~  244 (334)
                      |.+. .|+...  ..+.|...++........+...-.....|+++|++..|+.+....+.|..+|+..  .....+.. .
T Consensus       211 p~~g-~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~~  287 (400)
T 3p5b_L          211 PVHG-FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDE  287 (400)
T ss_dssp             TTTT-EEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CCCEEEEECS
T ss_pred             cccC-eEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC--CccEEEEeCC
Confidence            9766 454443  2478999998644333333333356789999998888877764678899999874  33333322 1


Q ss_pred             ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         245 VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       245 ~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      ........+++. .+.++++-...+.|..+|..+++
T Consensus       288 ~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          288 KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             STTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred             CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence            122344556653 34455555667889999977664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.93  E-value=1.8e-06  Score=74.03  Aligned_cols=198  Identities=10%  Similarity=-0.001  Sum_probs=118.2

Q ss_pred             ecccceecCC--CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCC-----cEEEEE
Q psy2305          67 YPKTSSIDGF--TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLS-----EVKIFS  139 (334)
Q Consensus        67 ~~~~~~~s~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~-----~i~i~d  139 (334)
                      .|..++++|+  +..|..+...+.|+.+|..+++.........      .+..++++++|+++++...+     .+..++
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~------~P~giavd~dG~lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIG------QCADVNFTLNGDMVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCS------CEEEEEECTTCCEEEEECCSCTTSEEEEEEC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCC------CccEEEECCCCCEEEEcCCCCcccceEEEEE
Confidence            3567788884  3344444444889999998877655443211      57899999999944444321     133333


Q ss_pred             cCCCCCeeeeecccccccccceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEee-c-cCCCCeEEEEEccCCcEE
Q psy2305         140 TDRPGRECVSRNLKPWFRKNIVSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFL-K-GHNGGITHLEFSSNGILL  216 (334)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~l  216 (334)
                      ... +.....   ... .-.....++++| ++. ++++-..++.|+.+|..++.....+ . +....-..++|+|+|++|
T Consensus       214 ~~~-~~~~~~---~~~-~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L  287 (433)
T 4hw6_A          214 RAS-GFTERL---SLC-NARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA  287 (433)
T ss_dssp             GGG-TTCCEE---EEE-ECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE
T ss_pred             CCC-Ceeccc---ccc-ccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE
Confidence            321 111000   111 223456788999 665 6666566789999998877652332 1 112233579999999977


Q ss_pred             EeeecCCCeEEEEEccCCCcc---ceeeccc-------------ccCCceEEEEe---------cCCCceEEeeecCCcE
Q psy2305         217 FSGARKDCEIICWDLRNPGCI---LHTFPRQ-------------VSTNQRVYFDL---------TSCSNYLLSGNTNGDL  271 (334)
Q Consensus       217 ~~~~~~d~~i~iwd~~~~~~~---~~~~~~~-------------~~~~~~~~~~~---------s~~~~~l~~~~~dg~i  271 (334)
                      +.+....+.|+.+++......   ...+.+.             ..-.....+++         .++|.++++-...+.|
T Consensus       288 Yvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I  367 (433)
T 4hw6_A          288 YIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV  367 (433)
T ss_dssp             EEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred             EEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence            666636788999887631111   1122111             00123456788         7777777776777889


Q ss_pred             EEEeC
Q psy2305         272 SIWNV  276 (334)
Q Consensus       272 ~iwd~  276 (334)
                      +.++.
T Consensus       368 ~~~~~  372 (433)
T 4hw6_A          368 RVLTP  372 (433)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            99885

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.92  E-value=5.7e-07  Score=80.12  Aligned_cols=276  Identities=12%  Similarity=0.063  Sum_probs=154.4

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-EEEEee------C
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-YFLCSS------M   85 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~l~~~~------~   85 (334)
                      +..++.++.|+.|.-+|..+++..-.........     .. .....++..  -      -..+++ .+++++      .
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~-----~~-~~~~sP~v~--~------~~~~G~~~v~vg~~~~e~~~  182 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGA-----GY-TMTGAPTIV--K------DGKTGKVLLIHGSSGDEFGV  182 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGG-----TC-BCCSCCEEE--E------CTTTCCEEEEECCBCGGGCC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCc-----Cc-ccccCCEEe--C------CCcCCcEEEEEeccccccCC
Confidence            4567788889999999999998763222110000     00 000011100  0      001232 455554      3


Q ss_pred             CCcEEEEeCCCCeeeEEEcCcccc----------------------c--------------cccceeEEEEcCCCCEEEE
Q psy2305          86 YAPIHLWDSVGGEIKATYRPYNQV----------------------D--------------EVTHAYSLAFSLDGNKIYA  129 (334)
Q Consensus        86 d~~i~iwd~~~~~~~~~~~~~~~~----------------------~--------------~~~~v~~~~~~~~~~~l~~  129 (334)
                      ++.|.-+|.++|+.+.........                      +              ....-..+++.|+...++.
T Consensus       183 ~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv  262 (582)
T 1flg_A          183 VGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIV  262 (582)
T ss_dssp             BCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEE
T ss_pred             CCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEE
Confidence            788999999999987765431100                      0              0000023567777777764


Q ss_pred             ee---------------------C----CcEEEEEcCCCCCeeeeecccccccc--------cceEEEEEc-CCCC--cE
Q psy2305         130 GF---------------------L----SEVKIFSTDRPGRECVSRNLKPWFRK--------NIVSAIAIN-PVHP--DI  173 (334)
Q Consensus       130 ~~---------------------d----~~i~i~d~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~--~~  173 (334)
                      +.                     |    +.|..+|..+ ++..-...  ...|.        .++. +... .+|+  ..
T Consensus       263 ~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T-G~~~W~~q--~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~  338 (582)
T 1flg_A          263 GAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS-GEVKWFYQ--HTPNDAWDFSGNNELVL-FDYKAKDGKIVKA  338 (582)
T ss_dssp             EECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT-CCEEEEEE--SSTTCCSCCCCCCCCEE-EEEECSSSCEEEE
T ss_pred             eCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC-CCEEEEEe--CCCCCcccccCCCCcEE-EeeecCCCCEEEE
Confidence            43                     1    5788999987 66655321  22221        1221 2222 4663  26


Q ss_pred             EEEeecCCeEEEEECCCCCceEeeccCC-------------CCe--------------------------------EEEE
Q psy2305         174 CALGTYSKIIGLFSDSDGRPLFFLKGHN-------------GGI--------------------------------THLE  208 (334)
Q Consensus       174 l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~i--------------------------------~~~~  208 (334)
                      ++.++.+|.++++|.++++.+..+....             .++                                ..++
T Consensus       339 v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a  418 (582)
T 1flg_A          339 TAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMA  418 (582)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCE
T ss_pred             EEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCce
Confidence            7889999999999999998876553221             000                                1345


Q ss_pred             EccCCcEEEeeec--------------------------------CCCeEEEEEccCCCccceeecccccCCceEEEEec
Q psy2305         209 FSSNGILLFSGAR--------------------------------KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLT  256 (334)
Q Consensus       209 ~~~~~~~l~~~~~--------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s  256 (334)
                      ++|+...+++...                                .++.|..||+.+ ++.+.+......   ...-...
T Consensus       419 ~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~t-G~~~W~~~~~~~---~~~g~~~  494 (582)
T 1flg_A          419 YSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVS-GKVVWEHKEHLP---LWAGVLA  494 (582)
T ss_dssp             ECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTT-CCEEEEEEESSC---CCSCCEE
T ss_pred             ECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCC-CCEEEEecCCCC---CcccceE
Confidence            6666555554320                                257899999988 666655543211   1110111


Q ss_pred             CCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccccc-ceeeeccCCCcccceeeEEeeec
Q psy2305         257 SCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCT-NGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       257 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                      ..+.+++.++.||.++.||.+++            +.+.++....+.. .-+.|  ..+|.   +|+++.+.
T Consensus       495 tagglvf~g~~dg~l~A~D~~tG------------~~lW~~~~~~g~~a~P~~y--~~~G~---qYv~~~~G  549 (582)
T 1flg_A          495 TAGNLVFTGTGDGYFKAFDAKSG------------KELWKFQTGSGIVSPPITW--EQDGE---QYLGVTVG  549 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTC------------CEEEEEECSSCCCSCCEEE--EETTE---EEEEEEEC
T ss_pred             eCCCEEEEECCCCcEEEEECCCC------------CEEEEecCCCCcccCceEE--EECCE---EEEEEEcc
Confidence            24667778999999999999999            6666665543322 23677  77882   45555433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.89  E-value=4.4e-06  Score=65.64  Aligned_cols=205  Identities=9%  Similarity=0.041  Sum_probs=123.5

Q ss_pred             CceeEEEEcCCCcEEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +.+..++|+|++..|+ +...++.|...|.. ++...              .+........-.+++       .+++.++
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~--------------~i~l~g~~D~EGIa~-------~~~g~~~   84 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIR--------------TIPLDFVKDLETIEY-------IGDNQFV   84 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEE--------------EEECSSCSSEEEEEE-------CSTTEEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEE--------------EEecCCCCChHHeEE-------eCCCEEE
Confidence            3478899999766554 56678889999987 55542              221111123344444       6688777


Q ss_pred             EEeeCCCcEEEEeCCCCee---eEEEcC-ccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCC--CCCeeeee--c
Q psy2305          81 LCSSMYAPIHLWDSVGGEI---KATYRP-YNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDR--PGRECVSR--N  151 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~---~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~--~~~~~~~~--~  151 (334)
                      ++.-.++.+.++++.....   +..... ............++|+|+++.|+++. .....+|.++.  ....+...  +
T Consensus        85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~  164 (255)
T 3qqz_A           85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK  164 (255)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred             EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence            7766678888888765432   222221 11111122578999999998777665 44445555541  01111110  0


Q ss_pred             -ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCC---------CCeEEEEEccCCcEEEeeec
Q psy2305         152 -LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN---------GGITHLEFSSNGILLFSGAR  221 (334)
Q Consensus       152 -~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~  221 (334)
                       +....+...+.+++++|...++++....++.|.++|.. ++.+..+.-..         .....|+|.++|+ |+..+ 
T Consensus       165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvs-  241 (255)
T 3qqz_A          165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVS-  241 (255)
T ss_dssp             HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEE-
T ss_pred             hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEc-
Confidence             00011334678999999887677777888999999964 66655543221         2567999999997 55556 


Q ss_pred             CCCeEEEEEc
Q psy2305         222 KDCEIICWDL  231 (334)
Q Consensus       222 ~d~~i~iwd~  231 (334)
                      +.+.++.+.-
T Consensus       242 E~n~~y~f~~  251 (255)
T 3qqz_A          242 EPNRFYRFTP  251 (255)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCceEEEEEe
Confidence            6666666543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.88  E-value=1.9e-05  Score=73.27  Aligned_cols=286  Identities=9%  Similarity=0.008  Sum_probs=160.5

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|.++...++|.+.+ |+.+ -+.+||..+++... +....       ..........|.++..       .++|.+ ..
T Consensus       212 ~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~-~~~~~-------~~~~~l~~~~i~~i~~-------d~~g~l-Wi  273 (781)
T 3v9f_A          212 DVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTN-FHNNP-------GNIHGALSSYIFSIKQ-------LKDNKL-WI  273 (781)
T ss_dssp             SEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-------------------CCCCEEEEEE-------CTTSEE-EE
T ss_pred             ceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEE-EEcCC-------CccccccCceEEEEEE-------CCCCCE-EE
Confidence            478888888887554 4444 58889987665431 00000       0000012245666554       557764 44


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEc-------Cc--cccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYR-------PY--NQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~-------~~--~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      |+..+-|.++|..+++......       ..  ...-....|.++...++|.+.+...++-|..++... . ........
T Consensus       274 gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~~  351 (781)
T 3v9f_A          274 ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAP-P-TFHTWSYS  351 (781)
T ss_dssp             EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSC-C-SCEEEC--
T ss_pred             EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCC-C-cceeeccC
Confidence            5554558889987765432211       00  011111278999999998766655577788888774 2 22211000


Q ss_pred             ------ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee---ccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305         154 ------PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL---KGHNGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       154 ------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                            .......|.++...++|.  |..|+.++.|..||..+++.....   ......|.++...++|.+. .|+ .++
T Consensus       352 ~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt-~~~  427 (781)
T 3v9f_A          352 PTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGT-YLG  427 (781)
T ss_dssp             --CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEE-TTE
T ss_pred             ccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEe-ccC
Confidence                  011235689999988886  566777778999997654322111   1234578899888888654 466 567


Q ss_pred             eEEEEEccCCCccceeecc-cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceec---cc
Q psy2305         225 EIICWDLRNPGCILHTFPR-QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS---AH  300 (334)
Q Consensus       225 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~  300 (334)
                      -+..+|..+ ++ ...+.. ......+.++...++|.+.+. +. +-|..+|..+++..          ......   ..
T Consensus       428 Gl~~~~~~~-~~-~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~----------~~~~~~~~~~~  493 (781)
T 3v9f_A          428 NISYYNTRL-KK-FQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVI----------HHYDTSNSQLL  493 (781)
T ss_dssp             EEEEECSSS-CE-EEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCC----------EEECTTTSSCS
T ss_pred             CEEEEcCCC-Cc-EEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEE----------ecccCcccccc
Confidence            788888765 32 222221 122456778877778876554 44 45889998876321          111100   11


Q ss_pred             ccccceeeeccCCCcccceeeEEeeecceeee
Q psy2305         301 QDCTNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      ...|.++..  .+++    .+.+....+|.++
T Consensus       494 ~~~i~~i~~--d~~g----~lWigt~~~Gl~~  519 (781)
T 3v9f_A          494 ENFVRSIAQ--DSEG----RFWIGTFGGGVGI  519 (781)
T ss_dssp             CSCEEEEEE--CTTC----CEEEEESSSCEEE
T ss_pred             cceeEEEEE--cCCC----CEEEEEcCCCEEE
Confidence            346788888  8888    6555444455544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.87  E-value=1.2e-05  Score=63.22  Aligned_cols=203  Identities=10%  Similarity=0.028  Sum_probs=124.7

Q ss_pred             eeEEEEEEecccceecCCCc-EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEE
Q psy2305          59 GIIYDYVWYPKTSSIDGFTS-YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVK  136 (334)
Q Consensus        59 ~~v~~~~~~~~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~  136 (334)
                      ..+..++|       +|+++ ++++...++.|...|.. ++.++.+..... .   ....+++.+++.++++.. ++.+.
T Consensus        27 ~~lSGla~-------~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~---D~EGIa~~~~g~~~vs~E~~~~l~   94 (255)
T 3qqz_A           27 NNISSLTW-------SAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-K---DLETIEYIGDNQFVISDERDYAIY   94 (255)
T ss_dssp             SCEEEEEE-------ETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-S---SEEEEEECSTTEEEEEETTTTEEE
T ss_pred             cCcceeEE-------eCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-C---ChHHeEEeCCCEEEEEECCCCcEE
Confidence            35777777       55554 55557778889999987 888777754221 1   567889999988766654 78899


Q ss_pred             EEEcCCCCC--eeeeeccc--ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC---CCCceEeec-------cCCC
Q psy2305         137 IFSTDRPGR--ECVSRNLK--PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS---DGRPLFFLK-------GHNG  202 (334)
Q Consensus       137 i~d~~~~~~--~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~-------~~~~  202 (334)
                      ++++...+.  ......+.  ..........++|+|.++ .|.++.+.....+|.+.   ....+..+.       .+..
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence            999876443  11211111  112345578999999998 56656555444444443   111222221       1234


Q ss_pred             CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc--c-----CCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305         203 GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV--S-----TNQRVYFDLTSCSNYLLSGNTNGDLSIWN  275 (334)
Q Consensus       203 ~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~-----~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  275 (334)
                      .+.+++++|....|+..+..++.+..+|..  ++.+..+.-..  .     -...-.++|.++|++.++ ++.+.++.+.
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             CceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            578999999665555545377888888877  44444433221  0     124567899999985555 6777777665


Q ss_pred             CC
Q psy2305         276 VN  277 (334)
Q Consensus       276 ~~  277 (334)
                      ..
T Consensus       251 ~~  252 (255)
T 3qqz_A          251 PQ  252 (255)
T ss_dssp             C-
T ss_pred             ec
Confidence            43

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=1.5e-05  Score=74.04  Aligned_cols=286  Identities=8%  Similarity=-0.016  Sum_probs=161.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.++...++|. |-.|+.++-|..|+........ +......  .   .........|.++..       .++++ |.
T Consensus       313 ~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~--~---~~~~l~~~~v~~i~~-------d~~g~-lW  377 (781)
T 3v9f_A          313 ASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPTQ--M---NESSLSNKVVSSVCD-------DGQGK-LW  377 (781)
T ss_dssp             SCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----C--C---CSSCCSSSCEEEEEE-------CTTSC-EE
T ss_pred             CeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-eccCccc--c---ccCCCCCcceEEEEE-------cCCCC-EE
Confidence            3578888888886 4456656668888887665431 0000000  0   000012245666554       55666 44


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      .|+.++-|..|+..++.... +... .......|.++...+++.+.+...++-+..++..+ + ....... .......|
T Consensus       378 igt~~~Gl~~~~~~~~~~~~-~~~~-~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~-~~~~~~~-~~~~~~~v  452 (781)
T 3v9f_A          378 IGTDGGGINVFENGKRVAIY-NKEN-RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRL-K-KFQIIEL-EKNELLDV  452 (781)
T ss_dssp             EEEBSSCEEEEETTEEEEEC-C------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSS-C-EEEECCS-TTTCCCCE
T ss_pred             EEeCCCcEEEEECCCCeEEE-ccCC-CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCC-C-cEEEecc-CCCCCCeE
Confidence            55655668899976543321 1110 01111278999988888766644467788888764 2 2332110 01234678


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC-----CCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH-----NGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      .++...+++.  |..|+. +.|..||..+++........     ...|.++...++|++.+ ++ .++-+..||... +.
T Consensus       453 ~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt-~~~Gl~~~~~~~-~~  526 (781)
T 3v9f_A          453 RVFYEDKNKK--IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GT-FGGGVGIYTPDM-QL  526 (781)
T ss_dssp             EEEEECTTSE--EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EE-SSSCEEEECTTC-CE
T ss_pred             EEEEECCCCC--EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EE-cCCCEEEEeCCC-Ce
Confidence            9999888885  555665 67999998776543332211     35789999998887554 44 444577788764 22


Q ss_pred             cceeecc--cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc-cccccceeeeccCC
Q psy2305         237 ILHTFPR--QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA-HQDCTNGVRWKHHK  313 (334)
Q Consensus       237 ~~~~~~~--~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~s~  313 (334)
                       ...+..  ......+.++...++|.+.++.. +|-+..||..+++.          +......+ ....|.++..  .+
T Consensus       527 -~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~----------~~~~~~~gl~~~~i~~i~~--d~  592 (781)
T 3v9f_A          527 -VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY----------QVFQRKEGLPNTHIRAISE--DK  592 (781)
T ss_dssp             -EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC----------EEECGGGTCSCCCCCEEEE--CS
T ss_pred             -EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE----------EEccccCCCCCceEEEEEE--CC
Confidence             333321  11244677888888888666543 66548888877521          11111111 1235677777  77


Q ss_pred             CcccceeeEEeeecceeee
Q psy2305         314 FERDLLVADATCSGQITNV  332 (334)
Q Consensus       314 ~~~~~~~~l~t~~~d~~i~  332 (334)
                      +|    .+.++ +.+|.++
T Consensus       593 ~g----~lW~~-t~~Gl~~  606 (781)
T 3v9f_A          593 NG----NIWAS-TNTGISC  606 (781)
T ss_dssp             SS----CEEEE-CSSCEEE
T ss_pred             CC----CEEEE-cCCceEE
Confidence            77    55444 3555443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.86  E-value=2e-05  Score=64.66  Aligned_cols=187  Identities=10%  Similarity=0.028  Sum_probs=116.2

Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCC--Ceeeeeccccc
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPG--RECVSRNLKPW  155 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~--~~~~~~~~~~~  155 (334)
                      |+.+.. ..|+..|+.+.+....+....      .+..++|++++..|+.+.  .+.|..+++....  .....   ...
T Consensus         4 ll~~~~-~~I~~i~~~~~~~~~~~~~~~------~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~---~~~   73 (316)
T 1ijq_A            4 LFFTNR-HEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT---VIS   73 (316)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEEECSCS------SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE---EEC
T ss_pred             EEEECC-CeEEEEECCCcceEehhcCCC------ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE---EEe
Confidence            444433 468999998776655554322      678999999877776554  6899999987410  11111   112


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC-CeEEEEEccCC
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD-CEIICWDLRNP  234 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~iwd~~~~  234 (334)
                      ..-.....+++.+.+.+++++-...+.|.++++........+.........+++.|.+..|+.+.... +.|...++.  
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--  151 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--  151 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--
Confidence            22234578999876653556656788999999864433333333345678999999776666655123 678888876  


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeCCCC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTS  279 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  279 (334)
                      +.....+... .-.....++++|++..|+.+. ..+.|..+|+...
T Consensus       152 G~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          152 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            4333333221 234567789998776666554 4678999998753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.86  E-value=2e-05  Score=65.63  Aligned_cols=186  Identities=8%  Similarity=-0.043  Sum_probs=116.4

Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +|+.+. ...|+..++........+....      .+..++|++.+..|+...  .+.|..+++..  .....   ....
T Consensus        46 ~ll~~~-~~~I~~i~~~g~~~~~~~~~~~------~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g--~~~~~---~~~~  113 (349)
T 3v64_C           46 VLLFAN-RIDIRQVLPHRSEYTLLLNNLE------NAIALDFHHRRELVFWSDVTLDRILRANLNG--SNVEE---VVST  113 (349)
T ss_dssp             EEEEEC-BSCEEEECTTSCCEEEEECSCS------CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEE---EECS
T ss_pred             eeEeec-ccceEEEeCCCCeeEEeecCCC------ceEEEEEeccccEEEEEeccCCceEEEecCC--CCceE---EEeC
Confidence            344433 3458888886655444443322      578999998777777553  78899999874  22221   1122


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC-CeEEEEEccCCC
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD-CEIICWDLRNPG  235 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~iwd~~~~~  235 (334)
                      .......+++.+.+.+++++-...+.|.+.++........+.........++++|.+..|+...... +.|..+++..  
T Consensus       114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG--  191 (349)
T 3v64_C          114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG--  191 (349)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--
T ss_pred             CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC--
Confidence            2234578999986663556666678999999865443333333345678999999766666655244 7788888763  


Q ss_pred             ccceeecccccCCceEEEEecCCCceEEee-ecCCcEEEEeCCCC
Q psy2305         236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSG-NTNGDLSIWNVNTS  279 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~  279 (334)
                      .....+... .......++++|++..|+.+ ...+.|..+++...
T Consensus       192 ~~~~~~~~~-~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          192 SGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             CSCEESCCS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCcEEEEEC-CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            333333221 23456778999877666555 44678999998754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.85  E-value=7.9e-06  Score=69.04  Aligned_cols=186  Identities=9%  Similarity=-0.031  Sum_probs=117.1

Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +|+.+. ...|+..++........+....      .+..++|.+.+..|+...  .+.|..+++..  .....   ....
T Consensus        89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~~~------~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g--~~~~~---~~~~  156 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHRSEYTLLLNNLE------NAIALDFHHRRELVFWSDVTLDRILRANLNG--SNVEE---VVST  156 (386)
T ss_dssp             EEEEEC-BSCEEEECTTSCCCEEEECSCS------CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CCEEE---EECS
T ss_pred             eeEeec-CccceeeccCCCcEEEEecCCC------ccEEEEEecCCCeEEEEeCCCCcEEEEecCC--CCcEE---EEeC
Confidence            344433 3568888887665544444322      578999998777776553  78899999874  32221   1122


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC-CeEEEEEccCCC
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD-CEIICWDLRNPG  235 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~iwd~~~~~  235 (334)
                      .......+++.+.+.+++++-...+.|.+.++........+.........+++.|.+..|+.+.... +.|..+++.  +
T Consensus       157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G  234 (386)
T 3v65_B          157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--G  234 (386)
T ss_dssp             SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--S
T ss_pred             CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--C
Confidence            2234567899986663556666678899999865443333333345678999999777776665234 678887776  3


Q ss_pred             ccceeecccccCCceEEEEecCCCceEEee-ecCCcEEEEeCCCC
Q psy2305         236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSG-NTNGDLSIWNVNTS  279 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~  279 (334)
                      .....+... .......++++|++..|+.+ ...+.|..+++...
T Consensus       235 ~~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          235 SGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             CSCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             CCcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            333333221 23346778999877666555 44678999998754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.81  E-value=3e-05  Score=63.50  Aligned_cols=229  Identities=14%  Similarity=-0.005  Sum_probs=134.9

Q ss_pred             EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC-CcEEEEeeCCCcEEEEe
Q psy2305          15 CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF-TSYFLCSSMYAPIHLWD   93 (334)
Q Consensus        15 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~-~~~l~~~~~d~~i~iwd   93 (334)
                      +|+.+. ...|+..++......              ..+..........++|       ++. +.++.+-...+.|..++
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~--------------~~~~~~~~~~~~~ld~-------d~~~~~lyw~D~~~~~I~r~~   63 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKEN--------------ATIVVGGLEDAAAVDF-------VFSHGLIYWSDVSEEAIKRTE   63 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSC--------------CEEEEEEEEEEEEEEE-------EGGGTEEEEEETTTTEEEEEE
T ss_pred             EEEEEc-cCeEEEEECCCCceE--------------EEEEecCCCccEEEEE-------EeCCCEEEEEECCCCcEEEEE
Confidence            344443 467999999876421              1111112233456666       544 44555555667899999


Q ss_pred             CCCCeee-EEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCC
Q psy2305          94 SVGGEIK-ATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVH  170 (334)
Q Consensus        94 ~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  170 (334)
                      +..+... ..+..  ...   .+..+++.+.+..|+.+ . .+.|.+++++.  .....   ...........+++.|.+
T Consensus        64 ~~g~~~~~~~~~~--~l~---~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~---l~~~~~~~P~giavdp~~  133 (318)
T 3sov_A           64 FNKTESVQNVVVS--GLL---SPDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKV---LFWQELDQPRAIALDPSS  133 (318)
T ss_dssp             TTSSSCCCEEEEE--CCS---CCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEE---EECSSCSSEEEEEEEGGG
T ss_pred             ccCCCceEEEEcC--CCC---CccEEEEEcCCCeEEEEECCCCEEEEEECCC--CcEEE---EEeCCCCCccEEEEeCCC
Confidence            8765321 11111  111   45789999866666544 3 78899999873  33221   122334567899999976


Q ss_pred             CcEEEEee--cCCeEEEEECCCCCceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccC
Q psy2305         171 PDICALGT--YSKIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVST  247 (334)
Q Consensus       171 ~~~l~~~~--~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  247 (334)
                      . .|+...  ..+.|..+++. +.....+ ...-.....++++|++..|+.+....+.|..+|+..  .....+... ..
T Consensus       134 g-~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~-~~  208 (318)
T 3sov_A          134 G-FMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAVVKG-SL  208 (318)
T ss_dssp             T-EEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-CC
T ss_pred             C-EEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC--CceEEEecC-CC
Confidence            6 555444  35789999875 3333333 223345689999998777777664678899999874  323333221 13


Q ss_pred             CceEEEEecCCCceEEeeecCCcEEEEeCCCCCC
Q psy2305         248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL  281 (334)
Q Consensus       248 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  281 (334)
                      .....+++.. +.++.+-...+.|..++..+++.
T Consensus       209 ~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          209 PHPFALTLFE-DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             CCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence            3445566643 34555555678899999876643

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.81  E-value=6.3e-05  Score=69.18  Aligned_cols=193  Identities=12%  Similarity=-0.045  Sum_probs=115.6

Q ss_pred             cCC-CcEEEEeeCCCcEEEEeCCCC----eeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCe
Q psy2305          74 DGF-TSYFLCSSMYAPIHLWDSVGG----EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRE  146 (334)
Q Consensus        74 s~~-~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~  146 (334)
                      ++. +.++++-...+.|+.+++...    .....+.....     .+..|++.+.+..|+.+.  .+.|.+.+++  +..
T Consensus       432 d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~-----~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--G~~  504 (791)
T 3m0c_C          432 EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ-----APDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVK  504 (791)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS-----CCCEEEEETTTTEEEEEETTTTEEEEEETT--SSS
T ss_pred             cccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC-----CcceeeeeecCCcEEEEecCCCeEEEEeCC--CCe
Confidence            554 444555555678888887642    22223321111     567899999887777554  7899999988  443


Q ss_pred             eeeecccccccccceEEEEEcCCCCcEEEEee-c-CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305         147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGT-Y-SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                      ...   ...........|+++|.+. .|+... . .+.|...++........+...-.....|++++.+..|+.+.....
T Consensus       505 ~~~---l~~~~l~~P~gIaVDp~~g-~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~  580 (791)
T 3m0c_C          505 RKT---LFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  580 (791)
T ss_dssp             EEE---EEECTTCCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             EEE---EEeCCCCCcceEEEecCCC-CEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence            332   1223334578999999866 454443 2 378999998644333333333456889999988777777764667


Q ss_pred             eEEEEEccCCCccceeec-ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         225 EIICWDLRNPGCILHTFP-RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       225 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      .|...++..  .....+. ..........+++.. +.++++-...+.|...|..+++
T Consensus       581 ~I~~~d~dG--~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          581 SISSIDVNG--GNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             EEEEEETTS--CSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             cEEEEecCC--CceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCc
Confidence            899998874  3333332 211223345566533 3444444456788888877663

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.80  E-value=7.1e-06  Score=72.96  Aligned_cols=209  Identities=10%  Similarity=-0.011  Sum_probs=114.1

Q ss_pred             CcEEEEeeC-CCeEEEEEC-CCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEE
Q psy2305          13 GTCLLTNSN-DNHLRTFDL-PSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIH   90 (334)
Q Consensus        13 ~~~l~~~~~-d~~v~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~   90 (334)
                      +..+++++. ++.|.-+|. .+++..-..........  .....   ...+.      ..+++  .+..+++++.|+.|.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~--~~~~~---~~~~~------~~~~~--~~~~v~v~~~dg~l~  128 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDAST--KAVMC---CDVVD------RGLAY--GAGQIVKKQANGHLL  128 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG--GGGCT---TCSCC------CCCEE--ETTEEEEECTTSEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccc--ccccc---ccccc------cccEE--ECCEEEEEeCCCEEE
Confidence            345666666 788999999 88887632211100000  00000   00000      00111  345677778899999


Q ss_pred             EEeCCCCeeeEEEcCcccccccccee-EEEEcCCCCEEEEee------CCcEEEEEcCCCCCeeeeecccccc-------
Q psy2305          91 LWDSVGGEIKATYRPYNQVDEVTHAY-SLAFSLDGNKIYAGF------LSEVKIFSTDRPGRECVSRNLKPWF-------  156 (334)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~-------  156 (334)
                      .+|.++|+.+..+....+.... .+. .... .++..++...      ++.|..+|..+ ++.+.........       
T Consensus       129 alD~~tG~~~W~~~~~~~~~~~-~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~~~~~~~p  205 (571)
T 2ad6_A          129 ALDAKTGKINWEVEVCDPKVGS-TLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKT-GELKWRAFATGSDDSVRLAK  205 (571)
T ss_dssp             EEETTTCCEEEEEECCCGGGTC-BCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTT-CCEEEEEESSSCHHHHTBCT
T ss_pred             EEECCCCCEEEEecCCCCCccc-eeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCC-CcEEEEEccCCCccccccCc
Confidence            9999999998776543211000 111 1111 1444444333      58999999987 6655432110000       


Q ss_pred             ---------------------------cccceEEEEEcCCCCcEEEEeecC----------------CeEEEEECCCCCc
Q psy2305         157 ---------------------------RKNIVSAIAINPVHPDICALGTYS----------------KIIGLFSDSDGRP  193 (334)
Q Consensus       157 ---------------------------~~~~v~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~  193 (334)
                                                 .......+++.++.. .++.+..+                +.|..+|.++++.
T Consensus       206 ~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~  284 (571)
T 2ad6_A          206 DFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA  284 (571)
T ss_dssp             TTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE
T ss_pred             ccccccccccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE
Confidence                                       000012356777666 66655532                3699999999998


Q ss_pred             eEeeccC--C--------CCeEEEEEccCCc---EEEeeecCCCeEEEEEccCCCccceee
Q psy2305         194 LFFLKGH--N--------GGITHLEFSSNGI---LLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       194 ~~~~~~~--~--------~~i~~~~~~~~~~---~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                      +-.++..  .        .++ -+...++|+   .++.++ .+|.++++|..+ ++.+..+
T Consensus       285 ~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~-~~G~l~~lD~~t-G~~~w~~  342 (571)
T 2ad6_A          285 KWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHID-RNGILYTLNREN-GNLIVAE  342 (571)
T ss_dssp             EEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEEC-TTSEEEEEETTT-CCEEEEE
T ss_pred             EEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeC-CCcEEEEEECCC-CCEEeee
Confidence            8776432  1        222 122335774   567777 799999999987 6665544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.79  E-value=3.9e-05  Score=63.19  Aligned_cols=274  Identities=9%  Similarity=0.016  Sum_probs=143.3

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .+.+|.|.+++..+++ +..|.| +...+.++.=...            ... ......+.++.+       ++ +..++
T Consensus        37 ~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~------------~~~~~~~~~~~~~i~~-------~~-~~~~~   94 (327)
T 2xbg_A           37 TILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPR------------TLVLDHSDYRFNSVSF-------QG-NEGWI   94 (327)
T ss_dssp             CEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEEC------------CCCCSCCCCEEEEEEE-------ET-TEEEE
T ss_pred             cEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeEC------------CCCCCCCCccEEEEEe-------cC-CeEEE
Confidence            4788999877777774 456765 3344444321000            000 011234566555       44 34444


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      + +..+.|.. ....|+.-........  .+..+..+.+.+++..++++.++.|  |.....++.-..   ........+
T Consensus        95 ~-g~~g~i~~-S~DgG~tW~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~---~~~~~~~~~  165 (327)
T 2xbg_A           95 V-GEPPIMLH-TTDGGQSWSQIPLDPK--LPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQA---LVQEAIGVM  165 (327)
T ss_dssp             E-EETTEEEE-ESSTTSSCEECCCCTT--CSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEE---EECSCCCCE
T ss_pred             E-ECCCeEEE-ECCCCCCceECccccC--CCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEE---eecCCCcce
Confidence            4 44564433 2233443232221100  0114677888777777776666644  323322444332   223345578


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEE-EEC--CCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGL-FSD--SDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i-~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      ..+.+.|++. +++.+. +|.+.. .|-  .+.+.+.  ......+..+.+.++++.+++ + .+|.+++.+... ++.-
T Consensus       166 ~~~~~~~~~~-~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~-~~G~~~~s~~D~-G~tW  238 (327)
T 2xbg_A          166 RNLNRSPSGE-YVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-V-NGGKIAFSDPDN-SENW  238 (327)
T ss_dssp             EEEEECTTSC-EEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-E-TTTEEEEEETTE-EEEE
T ss_pred             EEEEEcCCCc-EEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-e-CCceEEEecCCC-CCee
Confidence            8999999987 776654 454444 342  2222221  234567889999999876654 4 578887764221 2222


Q ss_pred             eeeccc--ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305         239 HTFPRQ--VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER  316 (334)
Q Consensus       239 ~~~~~~--~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~  316 (334)
                      ..+...  .....+..+.+.+++.+++++. +|.| ++....++.         |+.+.........+..+.|  .+++ 
T Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~t---------W~~~~~~~~~~~~~~~v~~--~~~~-  304 (327)
T 2xbg_A          239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQT---------WQQDVDVKKVPSNFYKILF--FSPD-  304 (327)
T ss_dssp             CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSS---------CEECGGGTTSSSCCCEEEE--EETT-
T ss_pred             EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcc---------cEEcCccCCCCCCeEEEEE--ECCC-
Confidence            222111  1123467788888887777654 6766 344454521         1222211122346788999  7666 


Q ss_pred             cceeeEEeeecceeee
Q psy2305         317 DLLVADATCSGQITNV  332 (334)
Q Consensus       317 ~~~~~l~t~~~d~~i~  332 (334)
                         . +++++.+|.+.
T Consensus       305 ---~-~~~~G~~G~i~  316 (327)
T 2xbg_A          305 ---Q-GFILGQKGILL  316 (327)
T ss_dssp             ---E-EEEECSTTEEE
T ss_pred             ---c-eEEEcCCceEE
Confidence               5 56666777765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=1.1e-05  Score=69.13  Aligned_cols=237  Identities=10%  Similarity=0.001  Sum_probs=130.2

Q ss_pred             ceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ....|+++| ++..|+++...+.|+.+|..++...               .+.. ......       .++++++++.|+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~---------------~~~~-~~~~P~-------~ia~d~~G~~ly  194 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS---------------TVYS-GLSKVR-------TICWTHEADSMI  194 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE---------------EEEC-CCSCEE-------EEEECTTSSEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE---------------EEec-CCCCcc-------eEEEeCCCCEEE
Confidence            457899998 4556666655588999998876643               1111 122233       455588999666


Q ss_pred             EeeCC-C----cEEEEeCCCCeee--EEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeecc
Q psy2305          82 CSSMY-A----PIHLWDSVGGEIK--ATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        82 ~~~~d-~----~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      ++... +    .+.+.+. .+...  ..+....      ....++++| ++.++++-. .+.|..++...  ......  
T Consensus       195 vad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~------~p~giavdp~~g~lyv~d~~~~~V~~~~~~~--~~~~~~--  263 (430)
T 3tc9_A          195 ITNDQNNNDRPNNYILTR-ESGFKVITELTKGQ------NCNGAETHPINGELYFNSWNAGQVFRYDFTT--QETTPL--  263 (430)
T ss_dssp             EEECCSCTTSEEEEEEEG-GGTSCSEEEEEECS------SCCCEEECTTTCCEEEEETTTTEEEEEETTT--TEEEEE--
T ss_pred             EEeCCCCcccceEEEEeC-CCceeeeeeeccCC------CceEEEEeCCCCEEEEEECCCCEEEEEECCC--CcEEEE--
Confidence            55442 2    2333443 33222  2222111      457899999 566555554 78899999874  322110  


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC--CCc--eEeeccC---------------CCCeE-EEEEc--
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD--GRP--LFFLKGH---------------NGGIT-HLEFS--  210 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~--~~~~~~~---------------~~~i~-~~~~~--  210 (334)
                      ...........++|+|+++.++++-...+.|..++...  ++.  ...+.+.               -.... .++..  
T Consensus       264 ~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~  343 (430)
T 3tc9_A          264 FTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNP  343 (430)
T ss_dssp             EECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECG
T ss_pred             EEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccc
Confidence            11112245678999999983344445678899988653  211  1222111               01122 44443  


Q ss_pred             ------cCCcEEEeeecCCCeEEEEEccCCCccceeeccc-----c-----------cCCceEEEEecCC-CceEEeeec
Q psy2305         211 ------SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ-----V-----------STNQRVYFDLTSC-SNYLLSGNT  267 (334)
Q Consensus       211 ------~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~-----------~~~~~~~~~~s~~-~~~l~~~~~  267 (334)
                            ++|.+.++-. ..+.|+.++..  +. +..+.+.     .           .-.....++++|+ +.++++-..
T Consensus       344 ~y~~~D~~g~lyvaD~-~n~~I~~i~~~--G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~  419 (430)
T 3tc9_A          344 AYKGSSDEYDFYFCDR-ENHCIRILTPQ--GR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE  419 (430)
T ss_dssp             GGTTSSCCEEEEEEEG-GGTEEEEECTT--SE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred             cccccCCCCeEEEEEC-CCcEEEEECCC--Cc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC
Confidence                  3344444333 56778887743  43 2222221     0           0124677889984 666666556


Q ss_pred             CCcEEEEeCC
Q psy2305         268 NGDLSIWNVN  277 (334)
Q Consensus       268 dg~i~iwd~~  277 (334)
                      +..|+.++++
T Consensus       420 n~rIr~i~~e  429 (430)
T 3tc9_A          420 NRRIRKIGYE  429 (430)
T ss_dssp             GTEEEEEEEC
T ss_pred             CCeEEEEccC
Confidence            7788887754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.72  E-value=2.2e-05  Score=67.32  Aligned_cols=239  Identities=11%  Similarity=0.038  Sum_probs=130.8

Q ss_pred             ceeEEEEcCC--CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           3 IEEDVDEAPD--GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         3 ~V~~~~~sp~--~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      ....++|+|+  +..|+.+...+.|+.++..++...               .+.. .....       ..++++++++++
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~---------------~~~~-~~~~P-------~giavd~dG~ly  196 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD---------------IKTT-NIGQC-------ADVNFTLNGDMV  196 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE---------------EECC-CCSCE-------EEEEECTTCCEE
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE---------------Eeec-CCCCc-------cEEEECCCCCEE
Confidence            4578999995  334555544488999998777654               1111 11223       345558899944


Q ss_pred             EEeeCC---Cc-EEEEeCCCCee-eEEEcCccccccccceeEEEEcC-CCCEEEEee-CCcEEEEEcCCCCCeeeeeccc
Q psy2305          81 LCSSMY---AP-IHLWDSVGGEI-KATYRPYNQVDEVTHAYSLAFSL-DGNKIYAGF-LSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        81 ~~~~~d---~~-i~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      ++....   .. +...+...+.. ...+....      ....++++| ++.+.++.. ++.|+.+|..+ +......  .
T Consensus       197 Vad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~------~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~~~~~--~  267 (433)
T 4hw6_A          197 VVDDQSSDTNTGIYLFTRASGFTERLSLCNAR------GAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTLTEEE--V  267 (433)
T ss_dssp             EEECCSCTTSEEEEEECGGGTTCCEEEEEECS------SBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCEEEEE--E
T ss_pred             EEcCCCCcccceEEEEECCCCeeccccccccC------CCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeEEEEE--e
Confidence            443311   11 33333221111 01111111      457889999 565555544 78899998874 3331211  0


Q ss_pred             ccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC--CCCc--eEeeccC---------------CCCeEEEEE-----
Q psy2305         154 PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS--DGRP--LFFLKGH---------------NGGITHLEF-----  209 (334)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~--~~~~~~~---------------~~~i~~~~~-----  209 (334)
                      ..+....-..++|+|+++.++++-...+.|+.++..  ++..  ...+.+.               -.....+++     
T Consensus       268 ~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~  347 (433)
T 4hw6_A          268 MMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEA  347 (433)
T ss_dssp             ECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGG
T ss_pred             ccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccc
Confidence            111122334799999998334444556889998865  2321  1122111               123567898     


Q ss_pred             ----ccCCcEEEeeecCCCeEEEEEccCCCccceeecccc----------------cCCceEEEEec-CCCceEEeeecC
Q psy2305         210 ----SSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV----------------STNQRVYFDLT-SCSNYLLSGNTN  268 (334)
Q Consensus       210 ----~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~~~~~~~~s-~~~~~l~~~~~d  268 (334)
                          .++|.++++-. ..+.|+.++..  +. +..+.+..                .-.....++++ ++|.++++-..+
T Consensus       348 y~~dd~~g~lyvaD~-~n~~I~~~~~~--G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n  423 (433)
T 4hw6_A          348 YAGEEDEYDFYFCDR-DSHTVRVLTPE--GR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN  423 (433)
T ss_dssp             GTTSSCCEEEEEEET-TTTEEEEECTT--SE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             ccccCCCCcEEEEEC-CCCEEEEECCC--CC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence                66676555555 67888888753  43 23332210                01235678888 667666666667


Q ss_pred             CcEEEEeCC
Q psy2305         269 GDLSIWNVN  277 (334)
Q Consensus       269 g~i~iwd~~  277 (334)
                      +.|+.++++
T Consensus       424 ~rIr~i~~e  432 (433)
T 4hw6_A          424 HRVRKIAPE  432 (433)
T ss_dssp             TEEEEEEEC
T ss_pred             CEEEEEecC
Confidence            788887764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.72  E-value=3.3e-05  Score=66.58  Aligned_cols=204  Identities=10%  Similarity=0.017  Sum_probs=117.6

Q ss_pred             cccceecCC-CcEEEEe-eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEE-------cCCCCEEEEee-CC-c--
Q psy2305          68 PKTSSIDGF-TSYFLCS-SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAF-------SLDGNKIYAGF-LS-E--  134 (334)
Q Consensus        68 ~~~~~~s~~-~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~-d~-~--  134 (334)
                      |..++|+|. ...|+.+ ...+.|++.|++++.....+....  ........++|       ++++..|+++. .+ .  
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~--~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT--IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT--SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc--cccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            445777883 4444444 444679999998877765554311  11225789999       99999777665 22 2  


Q ss_pred             ----EEEEEcCCCCCeee-e--ecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECC-------CCCc-------
Q psy2305         135 ----VKIFSTDRPGRECV-S--RNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS-------DGRP-------  193 (334)
Q Consensus       135 ----i~i~d~~~~~~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~~-------  193 (334)
                          |.+++....+.... .  .  .+... .....++++|++..++++-..++.|..+|+.       ++..       
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~--~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~  295 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQ--LIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN  295 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEE--EEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred             cCceEEEEecCCCCceeecccce--eeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence                55665332112110 0  0  11111 2345788999655366667778899999987       5543       


Q ss_pred             ----eEee-c-cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc---eeeccc-c------------cCCceE
Q psy2305         194 ----LFFL-K-GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL---HTFPRQ-V------------STNQRV  251 (334)
Q Consensus       194 ----~~~~-~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~---~~~~~~-~------------~~~~~~  251 (334)
                          ...+ . +.....+.++|+|+|++|+.+......|+.++.......+   ..+.+. .            .-....
T Consensus       296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~  375 (496)
T 3kya_A          296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC  375 (496)
T ss_dssp             CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred             cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence                1121 1 1234467999999999766665367889887765322111   122221 0            001122


Q ss_pred             -EEEec-------CCCceEEeeecCCcEEEEeC
Q psy2305         252 -YFDLT-------SCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       252 -~~~~s-------~~~~~l~~~~~dg~i~iwd~  276 (334)
                       .+...       ++|.++++=..+.+|+.++.
T Consensus       376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~  408 (496)
T 3kya_A          376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP  408 (496)
T ss_dssp             EEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred             EEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence             23333       45676666667788999984

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.70  E-value=9.1e-06  Score=72.41  Aligned_cols=211  Identities=10%  Similarity=-0.030  Sum_probs=117.1

Q ss_pred             CcEEEEeeC-CCeEEEEEC-CCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE----EEEeeCC
Q psy2305          13 GTCLLTNSN-DNHLRTFDL-PSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY----FLCSSMY   86 (334)
Q Consensus        13 ~~~l~~~~~-d~~v~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~----l~~~~~d   86 (334)
                      +..|++++. ++.|.-+|. .+++..-..........           ....+.......++++|.+..    |++++.|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~-----------~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~d  130 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAA-----------RAVACCDLVNRGLAYWPGDGKTPALILKTQLD  130 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGG-----------GGGCSSCSCCCCCEEECCCSSSCCEEEEECTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccc-----------cccccccccccceEEEecCCcceeEEEEEcCC
Confidence            345666776 888999999 88887632221110000           000000000011233333333    7778889


Q ss_pred             CcEEEEeCCCCeeeEEEcCccccccccceeE-EEEcCCCCEEEEee------CCcEEEEEcCCCCCeeeeeccccccc--
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYS-LAFSLDGNKIYAGF------LSEVKIFSTDRPGRECVSRNLKPWFR--  157 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~--  157 (334)
                      +.|.-+|.++|+.+............ .+.+ ..+ .++..++.++      ++.|..+|..+ ++.+-.........  
T Consensus       131 g~l~AlDa~TG~~~W~~~~~~~~~~~-~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~T-G~~~W~~~~~~~~~~~  207 (599)
T 1w6s_A          131 GNVAALNAETGETVWKVENSDIKVGS-TLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKT-GEQVWRAYATGPDKDL  207 (599)
T ss_dssp             SEEEEEETTTCCEEEEEECCCGGGTC-BCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTT-CCEEEEEESSSCHHHH
T ss_pred             CEEEEEECCCCCEEEeecCCCCCccc-eeecCCEE-ECCEEEEEecccccCCCCeEEEEECCC-CcEEEEEcCCCCcccc
Confidence            99999999999998776543211000 1111 111 1444443322      68999999988 66554321100000  


Q ss_pred             -------------------------------cc-ceEEEEEcCCCCcEEEEeecC----------------CeEEEEECC
Q psy2305         158 -------------------------------KN-IVSAIAINPVHPDICALGTYS----------------KIIGLFSDS  189 (334)
Q Consensus       158 -------------------------------~~-~v~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~  189 (334)
                                                     .. .-..+++.+... +++.+..+                +.|..+|.+
T Consensus       208 ~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~  286 (599)
T 1w6s_A          208 LLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD  286 (599)
T ss_dssp             TBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT
T ss_pred             ccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceEEEEeCC
Confidence                                           00 001356667776 77776654                489999999


Q ss_pred             CCCceEeeccCC----------CCeEEEEEc-cCC---cEEEeeecCCCeEEEEEccCCCccceee
Q psy2305         190 DGRPLFFLKGHN----------GGITHLEFS-SNG---ILLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       190 ~~~~~~~~~~~~----------~~i~~~~~~-~~~---~~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                      +++.+-.++...          .++. +... .+|   +.++.++ .+|.++++|.++ ++.+...
T Consensus       287 TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~-~~G~l~~lD~~t-G~~lw~~  349 (599)
T 1w6s_A          287 TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD-RNGIVYTLDRTD-GALVSAN  349 (599)
T ss_dssp             TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC-TTSEEEEEETTT-CCEEEEE
T ss_pred             CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC-CCcEEEEEECCC-CCEeecc
Confidence            999887765322          1221 2222 567   4677788 899999999987 6665544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.69  E-value=2.2e-06  Score=79.04  Aligned_cols=191  Identities=8%  Similarity=-0.031  Sum_probs=105.0

Q ss_pred             eec-CCCcEEEEeeC-CC----cEEEEeCCCC-eeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEE
Q psy2305          72 SID-GFTSYFLCSSM-YA----PIHLWDSVGG-EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIF  138 (334)
Q Consensus        72 ~~s-~~~~~l~~~~~-d~----~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~  138 (334)
                      ++| |||++|+.+.. +|    .|+++|+.++ +.+..  ....     ....++|+|||+.|+... +     ..|..+
T Consensus       180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~-----~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG-----TNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE-----ECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC-----ceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            348 89998886543 22    4999999988 63210  0001     234789999998887554 4     257777


Q ss_pred             EcCCCCCeeeeeccccc-ccccceEEEEEcCCCCcEEEEeec---CCeEEEEECCCCC-ce--Eee-ccCCCCeEEEEEc
Q psy2305         139 STDRPGRECVSRNLKPW-FRKNIVSAIAINPVHPDICALGTY---SKIIGLFSDSDGR-PL--FFL-KGHNGGITHLEFS  210 (334)
Q Consensus       139 d~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~-~~--~~~-~~~~~~i~~~~~~  210 (334)
                      ++.+....-..   .+. ........+.|+|||+ +|+....   ...|+++|+.++. ..  ..+ ........++.|+
T Consensus       253 ~lgt~~~~~~l---v~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~  328 (751)
T 2xe4_A          253 VMGKLQSEDVC---LYEEHNPLFSAFMYKAADTN-TLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH  328 (751)
T ss_dssp             ETTSCGGGCEE---EEECCCTTCEEEEEECTTSS-EEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred             ECCCCchhcEE---EEecCCCceEEEEEECCCCC-EEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence            87652211111   111 2223466889999999 6665442   3468899998752 22  333 3344555666655


Q ss_pred             cCCcEEEeeecCC--C--eEEEEEccCCCcccee-ecccccCCceEEEEecCCCceEEeeecCCc--EEEEeC
Q psy2305         211 SNGILLFSGARKD--C--EIICWDLRNPGCILHT-FPRQVSTNQRVYFDLTSCSNYLLSGNTNGD--LSIWNV  276 (334)
Q Consensus       211 ~~~~~l~~~~~~d--~--~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~--i~iwd~  276 (334)
                      . |..|+..+..+  +  .|..+|+... ..... +..+.....+..+.+. .+.++++...++.  |.++++
T Consensus       329 ~-g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          329 G-TSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             T-TTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             e-CCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            4 55444444133  3  5666666531 22222 2222222234455554 3445566666775  455565

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.68  E-value=6.1e-05  Score=67.11  Aligned_cols=207  Identities=10%  Similarity=0.069  Sum_probs=113.5

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEe
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWD   93 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd   93 (334)
                      ..+++++.++.|.-+|..+++..-.+..........    ..   ..+      ...+++  .+..+++++.|+.|.-+|
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~----~~---~~~------~~g~a~--~~~~v~~~t~dg~l~AlD  133 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRP----CC---DVV------NRGAAI--YGDKVFFGTLDASVVALN  133 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCC----SS---CSC------CCCCEE--ETTEEEEEETTTEEEEEE
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCccccc----cc---ccC------CCccEE--ECCEEEEEeCCCEEEEEE
Confidence            345556654458889999998764332211100000    00   000      001111  344677778899999999


Q ss_pred             CCCCeeeEEEcCcccccccccee-EEEEcC---CCC-EEEEee-------CCcEEEEEcCCCCCeeeeeccc---c----
Q psy2305          94 SVGGEIKATYRPYNQVDEVTHAY-SLAFSL---DGN-KIYAGF-------LSEVKIFSTDRPGRECVSRNLK---P----  154 (334)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~---~~~-~l~~~~-------d~~i~i~d~~~~~~~~~~~~~~---~----  154 (334)
                      .++|+.+...+........ .+. ......   +++ .++++.       ++.|..+|..+ ++.+...+..   .    
T Consensus       134 ~~TG~~~W~~~~~~~~~~~-~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t-G~~~W~~~~~~~~~~p~~  211 (582)
T 1flg_A          134 KNTGKVVWKKKFADHGAGY-TMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT-GEEIWMRPFVEGHMGRLN  211 (582)
T ss_dssp             SSSCCEEEEEECSCGGGTC-BCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT-CCEEEEEESSTTCEEEET
T ss_pred             CCCCCEEeeecCCCCCcCc-ccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC-CCEEeecCCCcccccccc
Confidence            9999998776643321000 010 111111   233 455543       67899999887 5554432110   0    


Q ss_pred             ---------------c---------------ccccceEEEEEcCCCCcEEEEeec--------------------C----
Q psy2305         155 ---------------W---------------FRKNIVSAIAINPVHPDICALGTY--------------------S----  180 (334)
Q Consensus       155 ---------------~---------------~~~~~v~~~~~~~~~~~~l~~~~~--------------------d----  180 (334)
                                     .               +....-..++++|... +++.+..                    |    
T Consensus       212 ~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g-~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~  290 (582)
T 1flg_A          212 GKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETN-TIIVGAGNPGPWNTWARTAKGGNPHDYDSLYT  290 (582)
T ss_dssp             TEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTT-EEEEEECCBSSSCGGGGSCTTSCSTTCCCTTC
T ss_pred             CcccccccccccccCCCccccccccccccccCCccccCCceEcCCCC-EEEEeCCCCCcccCcccccCCCcccccCCccc
Confidence                           0               0000112456777766 6666552                    2    


Q ss_pred             CeEEEEECCCCCceEeecc--CC--------CCeEEEEEc-cCCc---EEEeeecCCCeEEEEEccCCCccceee
Q psy2305         181 KIIGLFSDSDGRPLFFLKG--HN--------GGITHLEFS-SNGI---LLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       181 g~i~i~d~~~~~~~~~~~~--~~--------~~i~~~~~~-~~~~---~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                      +.|.-+|.++++.+-.++.  |.        .++. +... .+|+   .++.++ .+|.++++|.++ ++++..+
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~-~~G~l~~lD~~t-G~~lw~~  362 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHAD-RNGFFYVVDRSN-GKLQNAF  362 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEEC-TTSEEEEEETTT-CCEEEEE
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEEC-CCceEEEEECCC-CCEeccc
Confidence            6899999999998877643  22        1221 1221 4674   677888 899999999987 6655443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.62  E-value=2.5e-05  Score=63.74  Aligned_cols=194  Identities=13%  Similarity=0.143  Sum_probs=118.4

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC----CCE--EE-Eee----CCcEEEEEcCC
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD----GNK--IY-AGF----LSEVKIFSTDR  142 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l~-~~~----d~~i~i~d~~~  142 (334)
                      .|...+++.....+-+.+||+ +|+.+..+.. .      .++.+..-|+    |+.  ++ +..    +++|.+|+++.
T Consensus        37 dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g------~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp  108 (355)
T 3amr_A           37 TPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT-G------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (355)
T ss_dssp             CGGGCEEEEEETTTEEEEEET-TSCEEEEECC-S------CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred             CCCccEEEEEcCCCCEEEEcC-CCcEEEEccC-C------CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence            345556666667788999999 8888888764 2      4556665553    222  33 332    37899998853


Q ss_pred             CCCeeeeeccc-cc-ccc-cceEEEEE--cCC-CCcEEEEeecCCeEEEEECC-------CCCceEeeccCCCCeEEEEE
Q psy2305         143 PGRECVSRNLK-PW-FRK-NIVSAIAI--NPV-HPDICALGTYSKIIGLFSDS-------DGRPLFFLKGHNGGITHLEF  209 (334)
Q Consensus       143 ~~~~~~~~~~~-~~-~~~-~~v~~~~~--~~~-~~~~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~i~~~~~  209 (334)
                      ....+...... .. ... ..+..+++  +|. +..++++...+|.+..|++.       +.+.++++.. .+.+..+..
T Consensus       109 ~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egcvv  187 (355)
T 3amr_A          109 KNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAA  187 (355)
T ss_dssp             TTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEE
T ss_pred             CCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEE
Confidence            23334432100 00 111 55667777  774 44357777788999999983       2355666664 457888999


Q ss_pred             ccCCcEEEeeecCCCeEEEEEccCC----CccceeecccccCCceEEEEe--cCCCc-eEEeee-cCCcEEEEeCC
Q psy2305         210 SSNGILLFSGARKDCEIICWDLRNP----GCILHTFPRQVSTNQRVYFDL--TSCSN-YLLSGN-TNGDLSIWNVN  277 (334)
Q Consensus       210 ~~~~~~l~~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~--s~~~~-~l~~~~-~dg~i~iwd~~  277 (334)
                      .+....|+.+- ++.-|..++.+..    ...+..+........+..+++  .++++ ||++++ .++++.+||.+
T Consensus       188 Dd~~g~Lyv~e-Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          188 DDEYGRLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             ETTTTEEEEEE-TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             cCCCCeEEEec-ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            99888999998 7866666664421    122323221111223445555  55655 666555 57799999997

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.59  E-value=0.00021  Score=60.62  Aligned_cols=188  Identities=11%  Similarity=0.040  Sum_probs=118.6

Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCC--Ceeeeecccc
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPG--RECVSRNLKP  154 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~--~~~~~~~~~~  154 (334)
                      +|+.+. ...|+..++........+....      .+..++|++.+..|+.+.  .+.|..+++....  .....   ..
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~------~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~---~~  154 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT---VI  154 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECSCS------CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEE---EE
T ss_pred             eeEEec-cceeEEEccCCcceeEeccccC------cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceE---EE
Confidence            444443 4678888987665554444322      678999999777777554  6888888887311  11111   12


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecC-CCeEEEEEccC
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARK-DCEIICWDLRN  233 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-d~~i~iwd~~~  233 (334)
                      .........+++.+.+.+++++-...+.|.+.++........+.........+++.|.+.+|+..... .+.|...++. 
T Consensus       155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-  233 (400)
T 3p5b_L          155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-  233 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-
T ss_pred             eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-
Confidence            22334677899998555366666677899999987554444444344567899999976666665412 3678888776 


Q ss_pred             CCccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeCCCC
Q psy2305         234 PGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTS  279 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  279 (334)
                       +.....+... .-.....+++++++..|+.+. ..+.|..+|+...
T Consensus       234 -G~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          234 -GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             -SCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             -CCccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence             4333333221 234567789998777776654 4678999998764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.57  E-value=9e-07  Score=80.59  Aligned_cols=198  Identities=12%  Similarity=-0.065  Sum_probs=110.3

Q ss_pred             ccceecCCCcEEEEe-eCCCcEEEEeCCC----CeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcC
Q psy2305          69 KTSSIDGFTSYFLCS-SMYAPIHLWDSVG----GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTD  141 (334)
Q Consensus        69 ~~~~~s~~~~~l~~~-~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~  141 (334)
                      ..++|++.+..|+.+ ...+.|+.+++..    ......+..  ...   .+..|++.+.+..|+.+ . .+.|.++++.
T Consensus       409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~--~~~---~P~glavD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--DIQ---APDGLAVDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS--CC-----CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC--CCC---CcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence            345557666555554 4457898888864    121111111  111   45678888665555544 3 7889999987


Q ss_pred             CCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC-CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeee
Q psy2305         142 RPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  220 (334)
                      .  .....   ...........++++|.+..++++-... +.|..+++........+...-.....|+|+|++..|+.+.
T Consensus       484 g--~~~~~---l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          484 G--VKRKT---LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             S--CCEEE---ECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred             C--CceEE---EEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEe
Confidence            3  33332   1222234467889999766244433222 6788888753322222222233456899999877666665


Q ss_pred             cCCCeEEEEEccCCCccceeeccc-ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         221 RKDCEIICWDLRNPGCILHTFPRQ-VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       221 ~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ...+.|..+++..  .....+... ........+++..+ .++++....+.|..++..++
T Consensus       559 ~~~~~I~~~d~dG--~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G  615 (699)
T 1n7d_A          559 SKLHSISSIDVNG--GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG  615 (699)
T ss_dssp             TTTTEEEEECSSS--SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred             cCCCeEEEEccCC--CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence            3677899999864  222333211 11122333444443 45555566788999998765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.56  E-value=7.2e-05  Score=60.53  Aligned_cols=162  Identities=14%  Similarity=0.066  Sum_probs=104.1

Q ss_pred             ecccceecCCCcEEEEee-CCCcEEEEeCCCCeeeEEEcCccc---cccccceeEEEE---cCCCCEEEEee--------
Q psy2305          67 YPKTSSIDGFTSYFLCSS-MYAPIHLWDSVGGEIKATYRPYNQ---VDEVTHAYSLAF---SLDGNKIYAGF--------  131 (334)
Q Consensus        67 ~~~~~~~s~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~v~~~~~---~~~~~~l~~~~--------  131 (334)
                      .|.+..|++....|..++ ..++|..|+...+..... ....-   ......+..+.|   .|+++++++..        
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            345556666444555544 789999999875544333 22110   011114689999   68887777532        


Q ss_pred             ------CCcEEEEEcC---CCCCeeeeecccc--cc-------cccceEEEEEcCCCCcEEEEeecC-CeEEEEECCCCC
Q psy2305         132 ------LSEVKIFSTD---RPGRECVSRNLKP--WF-------RKNIVSAIAINPVHPDICALGTYS-KIIGLFSDSDGR  192 (334)
Q Consensus       132 ------d~~i~i~d~~---~~~~~~~~~~~~~--~~-------~~~~v~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~  192 (334)
                            +..+..||+.   + ++......+.-  .+       .......++..++|+ ..++++.. +.|..++.. ++
T Consensus        93 g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pd-G~  169 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSAD-GK  169 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTT-SC
T ss_pred             ccccCCCCEEEEEcCCcCCC-CCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCC-CC
Confidence                  4678999988   5 44433222110  01       113588999999999 88888888 888888864 33


Q ss_pred             ceEeec------cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         193 PLFFLK------GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       193 ~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      .+..+.      ......+.|+++|+|+.|++.. ..+.+..+|++.
T Consensus       170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~-~~g~L~~fD~~~  215 (334)
T 2p9w_A          170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG-GPRALTAFDVSK  215 (334)
T ss_dssp             CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES-SSSSEEEEECSS
T ss_pred             EEeeeeecCCCcccccCcceEEEeCCCCEEEEEc-CCCeEEEEcCCC
Confidence            333321      1122366899999999999998 699999999885

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.55  E-value=7.1e-05  Score=64.57  Aligned_cols=249  Identities=9%  Similarity=0.066  Sum_probs=136.8

Q ss_pred             ceeEEEEcC-CCcEEEEee-CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeee--ceeEEEEEEecccceecCCCc
Q psy2305           3 IEEDVDEAP-DGTCLLTNS-NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKE--GGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         3 ~V~~~~~sp-~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      ....|+|+| ++..|+.+. ..+.|++.|..++....              ......  ......++|...-..++++++
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~--------------l~~~~~~~~~~p~~ia~~~~~~~~d~~G~  205 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS--------------PLNINTIPTNRIRSIAFNKKIEGYADEAE  205 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE--------------EECCTTSSCSBEEEEEECCCBTTTBCTTC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE--------------EEccCccccCCCcEEEEeecccccCCCCC
Confidence            356899999 455555554 44678889988877641              111110  112333333111111278998


Q ss_pred             EEEEeeCCC-------cEEEEeCCC-Ceee-----EEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcC--
Q psy2305          79 YFLCSSMYA-------PIHLWDSVG-GEIK-----ATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTD--  141 (334)
Q Consensus        79 ~l~~~~~d~-------~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~--  141 (334)
                      .|+++...+       .|.+.+... +...     ..+....      ....++++|++..|+.+ . ++.|..+|+.  
T Consensus       206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~------~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~  279 (496)
T 3kya_A          206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK------QCNGATIHPINGELYFNSYEKGQVFRLDLVDY  279 (496)
T ss_dssp             EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES------CCCCEEECTTTCCEEEEETTTTEEEEECHHHH
T ss_pred             EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC------CceEEEEcCCCCeEEEEECCCCEEEEEecccc
Confidence            666665443       266665433 2221     2222111      45688999966666544 4 7889999987  


Q ss_pred             -----CCCCe-----------eeeecccccccccceEEEEEcCCCCcEEEE-eecCCeEEEEECC--CCCc--eEeeccC
Q psy2305         142 -----RPGRE-----------CVSRNLKPWFRKNIVSAIAINPVHPDICAL-GTYSKIIGLFSDS--DGRP--LFFLKGH  200 (334)
Q Consensus       142 -----~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~~~~--~~~~~~~  200 (334)
                           + +..           ....  ...+.......++|+|+|+ .|+. -...+.|+.++..  .+..  ...+.+.
T Consensus       280 ~~~~~t-g~~~tp~~~~~~g~~~~l--~~~~~~~~p~~ia~~p~G~-~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~  355 (496)
T 3kya_A          280 FKTIKN-GGSWDPIVKNNPNTFKQL--FTIADPSWEFQIFIHPTGK-YAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG  355 (496)
T ss_dssp             HHHHHT-TCCCCCBGGGCTTTEEEE--EECSSSSCCEEEEECTTSS-EEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred             cccccC-ceeeccccccccccccee--EecCCCCCceEEEEcCCCC-EEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence                 3 222           1110  0112234567999999998 5444 4567889986653  2221  1222211


Q ss_pred             ---C------------CCeE-EEEEc-------cCCcEEEeeecCCCeEEEEEccCCCccceeecccc------------
Q psy2305         201 ---N------------GGIT-HLEFS-------SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV------------  245 (334)
Q Consensus       201 ---~------------~~i~-~~~~~-------~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------  245 (334)
                         .            .... .+...       ++|.++++=. ....|+.++..  +. +.++.+..            
T Consensus       356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~-~N~rIr~i~~~--G~-v~TiaG~g~~~~~~~~~~~G  431 (496)
T 3kya_A          356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDR-LNFCVRKVTPE--GI-VSTYAGRGASTSLADGNQWG  431 (496)
T ss_dssp             TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEG-GGTEEEEECTT--CB-EEEEEESCTTHHHHHSCSCC
T ss_pred             CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEEC-CCCEEEEEeCC--CC-EEEEecccccccccCccccc
Confidence               1            1233 44444       4555544444 67888888843  43 34443220            


Q ss_pred             ----------cCCceEEEEecCC-CceEEeeecCCcEEEEeCCCC
Q psy2305         246 ----------STNQRVYFDLTSC-SNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       246 ----------~~~~~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~  279 (334)
                                .-.....++++++ |.++++=..+.+|+.++++..
T Consensus       432 ~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          432 TDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             CCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             cCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence                      0123567888886 776666666789999998875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.55  E-value=0.00044  Score=62.16  Aligned_cols=228  Identities=10%  Similarity=0.010  Sum_probs=137.9

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE-EEEeeCCCcEEEE
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY-FLCSSMYAPIHLW   92 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~-l~~~~~d~~i~iw   92 (334)
                      .+|+.+ ..+.|+..++++....              ..+....-.....++|       ++.+.. +.+-..++.|..+
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~~~~~--------------~~~~~~~~~~~~~l~~-------d~~~~~lywtD~~~~~I~r~   64 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLETNNNN--------------VAIPLTGVKEASALDF-------DVTDNRIYWTDISLKTISRA   64 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSCTTCE--------------EECCCCSCSCEEEEEE-------ETTTTEEEEEETTTTEEEEE
T ss_pred             cEEEEE-eCCcEEEEECCCCCcc--------------eEEEcCCCCceEEEEE-------ECCCCEEEEEECCCCeEEEE
Confidence            345544 4567999999876532              1111111133455555       555444 4455567889989


Q ss_pred             eCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCC
Q psy2305          93 DSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVH  170 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  170 (334)
                      ++........+.....     .+..+++.+.+..|+.+.  .+.|.+.+++.  .....   .....-.....+++.|..
T Consensus        65 ~~~g~~~~~v~~~g~~-----~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG--~~~~~---l~~~~l~~P~~iavdp~~  134 (628)
T 4a0p_A           65 FMNGSALEHVVEFGLD-----YPEGMAVDWLGKNLYWADTGTNRIEVSKLDG--QHRQV---LVWKDLDSPRALALDPAE  134 (628)
T ss_dssp             ETTSCSCEEEECSSCS-----CCCEEEEETTTTEEEEEETTTTEEEEEETTS--TTCEE---EECSSCCCEEEEEEETTT
T ss_pred             ECCCCCcEEEEeCCCC-----CcceEEEEeCCCEEEEEECCCCEEEEEecCC--CcEEE---EEeCCCCCcccEEEccCC
Confidence            8865433333332111     567899998777776553  68899999874  32221   122333457899999965


Q ss_pred             CcEEEEee--cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCC
Q psy2305         171 PDICALGT--YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTN  248 (334)
Q Consensus       171 ~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  248 (334)
                      . .|+...  ..+.|...++..... ..+...-.....+++++++..|+.+....+.|..+|+.. .. ...+...  ..
T Consensus       135 G-~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-~~-~~v~~~~--l~  208 (628)
T 4a0p_A          135 G-FMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-LN-REVIADD--LP  208 (628)
T ss_dssp             T-EEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-CS-CEEEEEC--CS
T ss_pred             C-eEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC-Cc-eEEeecc--CC
Confidence            5 454443  357888888754433 333334456789999998887777764678899999875 22 2333322  23


Q ss_pred             ceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         249 QRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       249 ~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      ....+++.. +.++++-...+.|...|..+++
T Consensus       209 ~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          209 HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             CceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            345666654 4444555557889999877764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.51  E-value=0.00026  Score=57.96  Aligned_cols=205  Identities=11%  Similarity=0.039  Sum_probs=117.9

Q ss_pred             eeEEEEcCCCcEE-EEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC-CCcEEE
Q psy2305           4 EEDVDEAPDGTCL-LTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG-FTSYFL   81 (334)
Q Consensus         4 V~~~~~sp~~~~l-~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~-~~~~l~   81 (334)
                      +.+++|++.+..| .+-...+.|+.++..+.....             ..+.. .-.       .|..+++++ .+++++
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-------------~~~~~-~l~-------~p~glavd~~~g~ly~   95 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-------------NVVVS-GLL-------SPDGLACDWLGEKLYW   95 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-------------EEEEE-CCS-------CCCEEEEETTTTEEEE
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-------------EEEcC-CCC-------CccEEEEEcCCCeEEE
Confidence            4577888754444 444466788888877653210             01111 101       234455675 445555


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      +-...+.|.++++........+..  ...   ....+++.|.+..|+.+.   .+.|...+++  +.....   .....-
T Consensus        96 ~d~~~~~I~~~~~dG~~~~~l~~~--~~~---~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~---~~~~~l  165 (318)
T 3sov_A           96 TDSETNRIEVSNLDGSLRKVLFWQ--ELD---QPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFI---IINSEI  165 (318)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECS--SCS---SEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEE---EECSSC
T ss_pred             EECCCCEEEEEECCCCcEEEEEeC--CCC---CccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEE---EEECCC
Confidence            555667899999864332222221  111   568999999766666543   4678888776  433221   112223


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      .....++++|++..+.++-...+.|..+|+........+.+.......+++.. +..+.+-. ..+.|..++..+ ++..
T Consensus       166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~-~~~~V~~~~~~~-G~~~  242 (318)
T 3sov_A          166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDW-STHSILACNKYT-GEGL  242 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEET-TTTEEEEEETTT-CCSC
T ss_pred             CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEec-CCCeEEEEECCC-CCce
Confidence            45689999997773455555678999999864333222332344566787753 33444443 678899998866 5444


Q ss_pred             eeec
Q psy2305         239 HTFP  242 (334)
Q Consensus       239 ~~~~  242 (334)
                      ..+.
T Consensus       243 ~~i~  246 (318)
T 3sov_A          243 REIH  246 (318)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.49  E-value=7.9e-06  Score=74.17  Aligned_cols=232  Identities=9%  Similarity=0.001  Sum_probs=124.4

Q ss_pred             cceecC-CCcEEEEeeCCC-----------cEEEEeCCCCeeeE--EEcCccccccccceeEEEEcCCCCEEEEee--CC
Q psy2305          70 TSSIDG-FTSYFLCSSMYA-----------PIHLWDSVGGEIKA--TYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LS  133 (334)
Q Consensus        70 ~~~~s~-~~~~l~~~~~d~-----------~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~  133 (334)
                      ..++.+ ++++++.|+.+.           .+.+||..+++...  .+... +.   ....++++..++++++.|+  +.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~-~~---~~~~~~~~~~~g~lyv~GG~~~~  265 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK-HD---MFCPGISMDGNGQIVVTGGNDAK  265 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-CC---CSSCEEEECTTSCEEEECSSSTT
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC-CC---CccccccCCCCCCEEEeCCCCCC
Confidence            345566 888888887542           57899998876432  22111 10   0334678889999998886  56


Q ss_pred             cEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee-cC-----CeEEEEECCCCCceEee----ccCCCC
Q psy2305         134 EVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT-YS-----KIIGLFSDSDGRPLFFL----KGHNGG  203 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~----~~~~~~  203 (334)
                      .+.+||..+ . .....+ .+.. ...-.+++..++++ +++.|+ .+     ..+.+||..+++-...-    ......
T Consensus       266 ~v~~yd~~t-~-~W~~~~-~~~~-~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~  340 (656)
T 1k3i_A          266 KTSLYDSSS-D-SWIPGP-DMQV-ARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA  340 (656)
T ss_dssp             CEEEEEGGG-T-EEEECC-CCSS-CCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCC
T ss_pred             ceEEecCcC-C-ceeECC-CCCc-cccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccc
Confidence            899999985 2 222111 1111 12223556677888 888888 34     46999998776422210    000000


Q ss_pred             eEEEEEccCCcEEEeeec--------CCCeEEEEEccCCCccceeeccccc-------CCceEEEEec-CCCceEEeeec
Q psy2305         204 ITHLEFSSNGILLFSGAR--------KDCEIICWDLRNPGCILHTFPRQVS-------TNQRVYFDLT-SCSNYLLSGNT  267 (334)
Q Consensus       204 i~~~~~~~~~~~l~~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~s-~~~~~l~~~~~  267 (334)
                      -....+..+++.++.++.        ....+..||.... ...........       .....++.|. .++++++.|+.
T Consensus       341 ~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~-~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~  419 (656)
T 1k3i_A          341 DKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS-GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS  419 (656)
T ss_dssp             CTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT-CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred             cccceeecCCceEEEECCCCcEEEecCccceeeeecCCc-ceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence            000112234444444431        1345778888763 21221111111       1122334443 37888888875


Q ss_pred             CC-----------cEEEEeCCCCCCCCCCCccccccccc--eecccccccceeeeccCCCcccceeeEEeeecc
Q psy2305         268 NG-----------DLSIWNVNTSNLPSSPYEESVQEPLY--KFSAHQDCTNGVRWKHHKFERDLLVADATCSGQ  328 (334)
Q Consensus       268 dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d  328 (334)
                      ++           .+.+||..+...          ..+.  .+. ....-.+++.  .|++    ++++.||.+
T Consensus       420 ~~~~~~~~~~~~~~v~~yd~~~~~W----------~~~~~~~mp-~~R~~~~~~~--l~~g----~i~v~GG~~  476 (656)
T 1k3i_A          420 PDYQDSDATTNAHIITLGEPGTSPN----------TVFASNGLY-FARTFHTSVV--LPDG----STFITGGQR  476 (656)
T ss_dssp             SSSSSSBCCCCEEEEECCSTTSCCE----------EEECTTCCS-SCCBSCEEEE--CTTS----CEEEECCBS
T ss_pred             CCCCCCCcCCcceEEEcCCCCCCCe----------eEEccCCCC-CCcccCCeEE--CCCC----CEEEECCcc
Confidence            43           577888776421          1111  111 1112234566  7899    999999865

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.46  E-value=0.00022  Score=65.67  Aligned_cols=201  Identities=10%  Similarity=0.041  Sum_probs=112.1

Q ss_pred             ceeEEEEcCCCcEEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc-EE
Q psy2305           3 IEEDVDEAPDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS-YF   80 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~-~l   80 (334)
                      .+..|+|++.+..|+ +-...+.|+.+++.......          .....+.. ..       ..|..+++++.++ ++
T Consensus       425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~----------~~~~vi~~-~l-------~~P~GLAvD~~~~~LY  486 (791)
T 3m0c_C          425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS----------SYDTVISR-DI-------QAPDGLAVDWIHSNIY  486 (791)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC------------------CEEEECS-SC-------SCCCEEEEETTTTEEE
T ss_pred             ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc----------ceeEEEec-CC-------CCcceeeeeecCCcEE
Confidence            456788887544444 44456778888876532100          00011110 00       1344566676664 44


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--C-CcEEEEEcCCCCCeeeeeccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--L-SEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      ++-...+.|.+.++........+.....     ....|++.|.+.+|+.+.  . +.|...+++  +.....   .....
T Consensus       487 ~tD~~~~~I~v~~ldG~~~~~l~~~~l~-----~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d--G~~~~~---lv~~~  556 (791)
T 3m0c_C          487 WTDSVLGTVSVADTKGVKRKTLFRENGS-----KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYS---LVTEN  556 (791)
T ss_dssp             EEETTTTEEEEEETTSSSEEEEEECTTC-----CEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEE---EECSS
T ss_pred             EEecCCCeEEEEeCCCCeEEEEEeCCCC-----CcceEEEecCCCCEEEecCCCCCeEEEEecC--CCceEE---EEeCC
Confidence            5555677899999864433333322111     578999999876676543  3 678888887  443332   12233


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeecc--CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKG--HNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      -.....|++++.+..++++-...+.|..+++........+..  .-....+|++.  +..|+.+....+.|...|..+
T Consensus       557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t  632 (791)
T 3m0c_C          557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT  632 (791)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence            356889999987772444445567899999864443333332  12234566663  335655553667888887655

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.44  E-value=0.00057  Score=61.31  Aligned_cols=225  Identities=13%  Similarity=-0.019  Sum_probs=124.2

Q ss_pred             CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe-eCCCcEEEEeCCCCee
Q psy2305          21 NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS-SMYAPIHLWDSVGGEI   99 (334)
Q Consensus        21 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~~   99 (334)
                      ....|+..++......              ..+..........++|       ++.+..|..+ ...+.|..+++.....
T Consensus        16 ~~~~I~~i~~~~~~~~--------------~~~~~~~~~~~~~ld~-------~~~~~~ly~sD~~~~~I~r~~~~g~~~   74 (619)
T 3s94_A           16 NRRDLRLVDATNGKEN--------------ATIVVGGLEDAAAVDF-------VFSHGLIYWSDVSEEAIKRTEFNKTES   74 (619)
T ss_dssp             CSSBEEEECCC-----------------------CBCCSCEEEEEE-------ETTTTEEEEEETTTTEEEEEEC-----
T ss_pred             ccccEEEEeCCCCcce--------------EEEEEcCCCceEEEEE-------EeCCCEEEEEECCCCeEEEEEccCCCc
Confidence            3467888888765311              0111112233455555       5555555544 4467888888865432


Q ss_pred             -eEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEE
Q psy2305         100 -KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICAL  176 (334)
Q Consensus       100 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  176 (334)
                       ...+...-.     .+..+++.+.+..|+.+.  .+.|.+.+++  +.....   .....-.....+++.|.+. .|+.
T Consensus        75 ~~~v~~~~~~-----~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d--G~~~~~---l~~~~l~~P~~Iavdp~~g-~ly~  143 (619)
T 3s94_A           75 VQNVVVSGLL-----SPDGLACDWLGEKLYWTDSETNRIEVSNLD--GSLRKV---LFWQELDQPRAIALDPSSG-FMYW  143 (619)
T ss_dssp             CEEEECSSCS-----CEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEE---EECSSCSCCCCEEEETTTT-EEEE
T ss_pred             eEEEEeCCCC-----CcCeEEEEecCCEEEEEeCCCCEEEEEECC--CCCEEE---EEeCCCCCCceEEEecCCC-eEEE
Confidence             222222111     678999999777777553  7899999998  433322   1223334567899999766 4544


Q ss_pred             ee--cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEE
Q psy2305         177 GT--YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD  254 (334)
Q Consensus       177 ~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  254 (334)
                      ..  ..+.|...++.-..........-.....+++++++..|+.+....+.|...|+..  .....+... .......++
T Consensus       144 tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG--~~~~~~~~~-~~~~P~gi~  220 (619)
T 3s94_A          144 TDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG--TNRQAVVKG-SLPHPFALT  220 (619)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC--CEEC----------CCCEE
T ss_pred             eccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC--CccEEEEeC-CCCCceEEE
Confidence            43  2467888887533332223333456789999998777777764567788888864  222222211 111223455


Q ss_pred             ecCCCceEEeeecCCcEEEEeCCCCCC
Q psy2305         255 LTSCSNYLLSGNTNGDLSIWNVNTSNL  281 (334)
Q Consensus       255 ~s~~~~~l~~~~~dg~i~iwd~~~~~~  281 (334)
                      +..+ ..+++-...+.|...|..+++.
T Consensus       221 ~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          221 LFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             ESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             EeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            5554 4444555678899999877643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.41  E-value=0.00054  Score=57.00  Aligned_cols=232  Identities=11%  Similarity=0.081  Sum_probs=116.1

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC----C
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF----T   77 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~----~   77 (334)
                      +..+.++|.|+|++++ +..+|.|++++  .++... +...        ... .........+++       +|+    +
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~-~~~~--------~v~-~~g~~~p~gia~-------~pdf~~~g   90 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLST-YAEL--------SVY-HRGESGLLGLAL-------HPRFPQEP   90 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEE-EEEC--------CCC-CSTTCSEEEEEE-------CTTTTTSC
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccE-eecc--------eEe-ecCCCCceeEEE-------CCCCCCCC
Confidence            4467899999998554 55679999998  333210 0000        000 001223445555       666    4


Q ss_pred             cEEEEeeCC-----CcEEEEeCCCCee------eEEEcCccccccccceeEEEEcCCCCEEEEeeC--------------
Q psy2305          78 SYFLCSSMY-----APIHLWDSVGGEI------KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL--------------  132 (334)
Q Consensus        78 ~~l~~~~~d-----~~i~iwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--------------  132 (334)
                      .+.++-...     +.|..++...+..      +..+.......+  ....++|.|||.+.++..+              
T Consensus        91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~  168 (352)
T 2ism_A           91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLH--SGGRIAFGPDGMLYVTTGEVYERELAQDLASLG  168 (352)
T ss_dssp             EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCC--CCCCEEECTTSCEEEECCCTTCGGGGGCTTCSS
T ss_pred             EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCc--CCceEEECCCCCEEEEECCCCCCccccCCCCCc
Confidence            444443322     5677887764321      111221001011  3468999999976665322              


Q ss_pred             CcEEEEEcCCCCCeeee----------ecccccccccceEEEEEcC-CCCcEEEEeecCCe--------EEEEECCCCC-
Q psy2305         133 SEVKIFSTDRPGRECVS----------RNLKPWFRKNIVSAIAINP-VHPDICALGTYSKI--------IGLFSDSDGR-  192 (334)
Q Consensus       133 ~~i~i~d~~~~~~~~~~----------~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~--------i~i~d~~~~~-  192 (334)
                      +.|.-++.+  +.....          ......++ .....++|+| ++. ++++-.....        |.+..  .+. 
T Consensus       169 g~I~ri~~d--G~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~-l~v~d~g~~~~~~~~~dei~~i~--~G~n  242 (352)
T 2ism_A          169 GKILRLTPE--GEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGE-LFSSEHGPSGEQGYGHDEVNLIV--PGGN  242 (352)
T ss_dssp             SEEEEECTT--SSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCC-EEEEEECC------CCCEEEEEC--TTCB
T ss_pred             eEEEEEcCC--CCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCC-EEEEEcCCCCCCCCCCeEEEEec--cCCc
Confidence            344444443  311000          00011222 2356889999 565 5554332222        33332  221 


Q ss_pred             -----------------ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc-----ceeecccccCCce
Q psy2305         193 -----------------PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI-----LHTFPRQVSTNQR  250 (334)
Q Consensus       193 -----------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~  250 (334)
                                       ++..+. +......++| .+|..+++.- ..+.|...++...+..     ...+..  ....+
T Consensus       243 yGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~-~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp  317 (352)
T 2ism_A          243 YGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGL-RGQALLRLVLEGERGRWRVLRVETALS--GFGRL  317 (352)
T ss_dssp             CCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEET-TTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCE
T ss_pred             CCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEEC-CCCEEEEEEECCCCcceeecchheecc--cCCCe
Confidence                             223332 2334567888 4676665555 6778888887752221     112211  23457


Q ss_pred             EEEEecCCCceEEeee
Q psy2305         251 VYFDLTSCSNYLLSGN  266 (334)
Q Consensus       251 ~~~~~s~~~~~l~~~~  266 (334)
                      ..+++.|||.++++..
T Consensus       318 ~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          318 REVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEEECTTSCEEEEEC
T ss_pred             eEEEECCCCcEEEEEe
Confidence            7888999997766543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.35  E-value=0.0003  Score=58.17  Aligned_cols=197  Identities=10%  Similarity=0.030  Sum_probs=112.6

Q ss_pred             ceecCCCcEEEEee------------CCCcEEEEeCCCCe-eeEEEcCcc--ccccccceeEEEEcC--CCC-EEEEe-e
Q psy2305          71 SSIDGFTSYFLCSS------------MYAPIHLWDSVGGE-IKATYRPYN--QVDEVTHAYSLAFSL--DGN-KIYAG-F  131 (334)
Q Consensus        71 ~~~s~~~~~l~~~~------------~d~~i~iwd~~~~~-~~~~~~~~~--~~~~~~~v~~~~~~~--~~~-~l~~~-~  131 (334)
                      +.+.|+|..+++++            .+|.|.++|.++.. ....+....  ..........+.+.+  ++. +|++. .
T Consensus        55 i~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh  134 (355)
T 3sre_A           55 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH  134 (355)
T ss_dssp             EEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred             eEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEEC
Confidence            34467776655552            68899999987321 122222211  001112567787766  453 45443 2


Q ss_pred             ---CCcEEEEEcCCCCCeeeeecccccc-cccceEEEEEcCCCCcEEEEee-----------------cCCeEEEEECCC
Q psy2305         132 ---LSEVKIFSTDRPGRECVSRNLKPWF-RKNIVSAIAINPVHPDICALGT-----------------YSKIIGLFSDSD  190 (334)
Q Consensus       132 ---d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~  190 (334)
                         +.+|.+|+++..+....... ...+ .-...+.+.+.++|. +.++..                 ..|.|..+|.  
T Consensus       135 ~~~~s~ielf~~d~~~~~~~~~~-~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--  210 (355)
T 3sre_A          135 PGSSSTVEVFKFQEEEKSLLHLK-TIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--  210 (355)
T ss_dssp             STTCCEEEEEEEETTTTEEEEEE-EECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--
T ss_pred             CCCCCeEEEEEEECCCCEEEEEe-ccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--
Confidence               46888988876444332211 1222 224678999999997 666543                 1255666664  


Q ss_pred             CCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc--eeecccccCCceEEEEecC-CCceEEeeec
Q psy2305         191 GRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL--HTFPRQVSTNQRVYFDLTS-CSNYLLSGNT  267 (334)
Q Consensus       191 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~s~-~~~~l~~~~~  267 (334)
                      ++ +..+...-...+.++|+||++.|+++....+.|..|++...+...  ..+.   .....-.+++.+ +|++.+++..
T Consensus       211 ~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          211 ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEES
T ss_pred             Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecC
Confidence            33 233322334568999999999888776467899999997533321  2221   134455678888 5888776643


Q ss_pred             C-CcEEEEe
Q psy2305         268 N-GDLSIWN  275 (334)
Q Consensus       268 d-g~i~iwd  275 (334)
                      + +.|..|+
T Consensus       287 ~g~~v~~~~  295 (355)
T 3sre_A          287 NGMRIFFYD  295 (355)
T ss_dssp             CHHHHHSCC
T ss_pred             CceEEEEEC
Confidence            3 3444444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.34  E-value=0.0015  Score=58.74  Aligned_cols=187  Identities=12%  Similarity=0.021  Sum_probs=117.7

Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +|+.+ ..+.|+..++.+......+... ...   .+..++|++.+..|+.+.  ++.|..++++.  .....   ....
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~-~~~---~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g--~~~~~---v~~~   77 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLT-GVK---EASALDFDVTDNRIYWTDISLKTISRAFMNG--SALEH---VVEF   77 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCC-SCS---CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEE---EECS
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcC-CCC---ceEEEEEECCCCEEEEEECCCCeEEEEECCC--CCcEE---EEeC
Confidence            44444 3567899998765443333221 111   578999999877777554  78899988874  32221   1222


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec-CCCeEEEEEccCCC
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR-KDCEIICWDLRNPG  235 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d~~i~iwd~~~~~  235 (334)
                      .......+++.+.+.+++++-...+.|.+.++........+...-.....+++.|....|+.... ..+.|...++.  +
T Consensus        78 g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d--G  155 (628)
T 4a0p_A           78 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD--G  155 (628)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--S
T ss_pred             CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC--C
Confidence            22456789998876646666666789999998644332223234456789999996556665541 24567777776  4


Q ss_pred             ccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeCCCC
Q psy2305         236 CILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTS  279 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  279 (334)
                      .....+..  .......++++++++.|+.+. ..+.|..+++...
T Consensus       156 ~~~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          156 SERTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             CSCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CceEEEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            33344332  244567789999776666554 4678999998764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.33  E-value=0.00027  Score=57.25  Aligned_cols=213  Identities=13%  Similarity=0.038  Sum_probs=119.2

Q ss_pred             eEEEEcCCCcEEEEee-CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           5 EDVDEAPDGTCLLTNS-NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      .+++|.+....|+.++ ..++|..|+...+..... ..+...       ..+........+.|.    .-.|+++++++.
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s-------~~g~~~~~~sGl~~~----~~D~~grL~vv~   83 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS-------SNGDGEQQMSGLSLL----THDNSKRLFAVM   83 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC-------CSSCCSEEEEEEEES----SSSSCCEEEEEE
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc-------ccCCCcceeeEEEEe----ccCCCCcEEEEE
Confidence            4678987555565555 789999999876654310 000000       000011123444441    004677777754


Q ss_pred             e-------------CCCcEEEEeCC---CCeeeEEEcCccccc--------cccceeEEEEcCCCCEEEEee-C-CcEEE
Q psy2305          84 S-------------MYAPIHLWDSV---GGEIKATYRPYNQVD--------EVTHAYSLAFSLDGNKIYAGF-L-SEVKI  137 (334)
Q Consensus        84 ~-------------~d~~i~iwd~~---~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~-d-~~i~i  137 (334)
                      .             .+..|..+|+.   +++.+..........        ....+..++..++|+..++++ . +.|..
T Consensus        84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r  163 (334)
T 2p9w_A           84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR  163 (334)
T ss_dssp             EETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE
T ss_pred             cccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEE
Confidence            3             25679999998   787766554321111        112578999999999888776 6 77666


Q ss_pred             EEcCCCCCeeeeecccc--cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc-eEeec--cC---CCCeEEE-E
Q psy2305         138 FSTDRPGRECVSRNLKP--WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP-LFFLK--GH---NGGITHL-E  208 (334)
Q Consensus       138 ~d~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~--~~---~~~i~~~-~  208 (334)
                      .+.+  ++......+..  .......+.++++|+|. .|++....|.|..+|+.+... ...+.  +.   -.....| .
T Consensus       164 V~pd--G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~-~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp  240 (334)
T 2p9w_A          164 VSAD--GKTVSTFAWESGNGGQRPGYSGITFDPHSN-KLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVT  240 (334)
T ss_dssp             ECTT--SCCEEEEEECCCCSSSCCSCSEEEEETTTT-EEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEE
T ss_pred             EeCC--CCEEeeeeecCCCcccccCcceEEEeCCCC-EEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccc
Confidence            6655  44333211111  11223467999999999 666665599999999885332 01111  21   1223443 3


Q ss_pred             EccCCcEEEeeecCCCeEEEEEcc
Q psy2305         209 FSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       209 ~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      --.+|+.|+++....+.+.+.+..
T Consensus       241 ~~~~G~vllV~~~~~~~~~l~S~D  264 (334)
T 2p9w_A          241 VPVGNESVLVGARAPYAISFRSWD  264 (334)
T ss_dssp             EEETTEEEEEEEETTEEEEEECSS
T ss_pred             cccCCEEEEEEcCCCCEEEEECCC
Confidence            334777755544255555555443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.32  E-value=0.00039  Score=57.82  Aligned_cols=239  Identities=12%  Similarity=-0.042  Sum_probs=118.6

Q ss_pred             cccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC---CCEEEEee--C-----CcEEE
Q psy2305          68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD---GNKIYAGF--L-----SEVKI  137 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--d-----~~i~i  137 (334)
                      |..+++.|+|+++++ ..++.|.+++  +++...................++|+|+   +..|+++.  .     +.|..
T Consensus        33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             EEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            344666889985554 5669999998  4443211111000111126789999998   55565443  2     67888


Q ss_pred             EEcCCCCCeeeeecc--ccc---ccccceEEEEEcCCCCcEEEEeec-------------CCeEEEEECCCC--------
Q psy2305         138 FSTDRPGRECVSRNL--KPW---FRKNIVSAIAINPVHPDICALGTY-------------SKIIGLFSDSDG--------  191 (334)
Q Consensus       138 ~d~~~~~~~~~~~~~--~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~--------  191 (334)
                      ++... +.......+  .+.   ........++|.|+|. ++++.+.             .|.|.-++....        
T Consensus       110 ~~~~~-~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          110 LRHLG-ERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEECS-SCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEeCC-CCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            88763 211100000  111   1112346899999997 6665332             256777765420        


Q ss_pred             ----CceEee-ccCCCCeEEEEEcc-CCcEEEeeecCCCeE------EEEEccCCC-----------------ccceeec
Q psy2305         192 ----RPLFFL-KGHNGGITHLEFSS-NGILLFSGARKDCEI------ICWDLRNPG-----------------CILHTFP  242 (334)
Q Consensus       192 ----~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i------~iwd~~~~~-----------------~~~~~~~  242 (334)
                          .....+ .++. ....++|+| +|+++++-. ....+      .+.-+...+                 .+...+.
T Consensus       188 ~~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~  265 (352)
T 2ism_A          188 GRRGARPEVYSLGHR-NPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP  265 (352)
T ss_dssp             TCTTSCTTEEEECCS-EECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             CCCCCCccEEEEcCC-CcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence                011111 2222 246789999 666554433 33321      233232211                 0111111


Q ss_pred             ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeE
Q psy2305         243 RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVAD  322 (334)
Q Consensus       243 ~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l  322 (334)
                         .......++| .+|.++++.-..+.|...+++.......      ......+......+.++++  .|||    .++
T Consensus       266 ---~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~------~~~~~~~~~~~~rp~~v~~--~pdG----~ly  329 (352)
T 2ism_A          266 ---QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR------VLRVETALSGFGRLREVQV--GPDG----ALY  329 (352)
T ss_dssp             ---TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE------EEEEEEEEESSCCEEEEEE--CTTS----CEE
T ss_pred             ---CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee------ecchheecccCCCeeEEEE--CCCC----cEE
Confidence               1123345666 4666666655567787777765321000      0001122122346889999  9999    766


Q ss_pred             Eee-ecce
Q psy2305         323 ATC-SGQI  329 (334)
Q Consensus       323 ~t~-~~d~  329 (334)
                      ++. +.+|
T Consensus       330 v~~~~~~g  337 (352)
T 2ism_A          330 VTTSNRDG  337 (352)
T ss_dssp             EEECSTTT
T ss_pred             EEEeCCCC
Confidence            554 3344

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.28  E-value=0.0012  Score=54.98  Aligned_cols=234  Identities=12%  Similarity=-0.016  Sum_probs=119.8

Q ss_pred             cccceecCCCcEEEEeeCCCcEEEEeCCCCe-eeEEEcCccccccccceeEEEEcCC---CCEEEEee-C--------Cc
Q psy2305          68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE-IKATYRPYNQVDEVTHAYSLAFSLD---GNKIYAGF-L--------SE  134 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~-d--------~~  134 (334)
                      |..+++.|+|++++ +..++.|.+++ .+++ .+..+...  .........|+++|+   +..|+++. .        +.
T Consensus        31 P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~--~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           31 PWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVA--NVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             EEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCC--CSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeecccee--ecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            34456688998555 45669999997 4554 22222110  001126789999998   55555432 2        56


Q ss_pred             EEEEEcCCCCCeeeeec-c--ccc-ccccceEEEEEcCCCCcEEEEeec-------------CCeEEEEECCCC------
Q psy2305         135 VKIFSTDRPGRECVSRN-L--KPW-FRKNIVSAIAINPVHPDICALGTY-------------SKIIGLFSDSDG------  191 (334)
Q Consensus       135 i~i~d~~~~~~~~~~~~-~--~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~------  191 (334)
                      |..|+.......+.... +  .+. ........++|.|+|. ++++.+.             .|.|.-++....      
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            77777764210111000 0  011 1112346799999998 6665332             256666665321      


Q ss_pred             --CceEeeccCCCCeEEEEEcc-CCcEEEeeecCCC--eEEEEEccCCC-----------------ccceeecccccCCc
Q psy2305         192 --RPLFFLKGHNGGITHLEFSS-NGILLFSGARKDC--EIICWDLRNPG-----------------CILHTFPRQVSTNQ  249 (334)
Q Consensus       192 --~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~d~--~i~iwd~~~~~-----------------~~~~~~~~~~~~~~  249 (334)
                        .....-.++.. ...++|+| +|+++++-...+.  .|.+.  ....                 .++..+.  .....
T Consensus       186 f~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~~a  260 (354)
T 3a9g_A          186 FPNSPIWSYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTG--SETWA  260 (354)
T ss_dssp             STTCCEEEECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT--TCCCC
T ss_pred             CCCCcEEEEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecC--CCCcC
Confidence              01111123433 45899999 6665544331121  23332  2111                 1111110  01234


Q ss_pred             eEEEEec-------CCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccccccee-cccccccceeeeccCCCcccceee
Q psy2305         250 RVYFDLT-------SCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKF-SAHQDCTNGVRWKHHKFERDLLVA  321 (334)
Q Consensus       250 ~~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~s~~~~~~~~~  321 (334)
                      ...++|.       .+|.++++.-..+.|...++......         .....+ ......+.++++  .|||    .+
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~---------~~~~~~~~~~~~rp~~v~~--~pDG----~l  325 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV---------RKISTFFKNVFGRLRDVVI--DDDG----GI  325 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE---------EEEEEECTTTSCCEEEEEE--CTTS----CE
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc---------cceeeeccCCCCCeeEEEE--CCCC----cE
Confidence            5566663       46777776666778888887753100         111122 222346889999  9999    77


Q ss_pred             EEeee
Q psy2305         322 DATCS  326 (334)
Q Consensus       322 l~t~~  326 (334)
                      .++..
T Consensus       326 yv~~~  330 (354)
T 3a9g_A          326 LISTS  330 (354)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            66654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.27  E-value=0.0021  Score=57.71  Aligned_cols=159  Identities=14%  Similarity=0.048  Sum_probs=92.4

Q ss_pred             CceeEEEEcCCCcEEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      .....+++.+.+..|+ +-...+.|.+.+++.....               .+....-       -.|..++++|.+..|
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~---------------~l~~~~l-------~~P~~Iavdp~~g~l  141 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK---------------VLFWQEL-------DQPRAIALDPSSGFM  141 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------------EEECSSC-------SCCCCEEEETTTTEE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE---------------EEEeCCC-------CCCceEEEecCCCeE
Confidence            3467889998555444 4456789999998865532               1211111       136677788875555


Q ss_pred             EEeeC--CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          81 LCSSM--YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        81 ~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      ..+..  .+.|...++. |.....+.... .   .....+++++++..|+.+.  .+.|..+|++  +.....   ...+
T Consensus       142 y~tD~g~~~~I~r~~~d-G~~~~~l~~~~-~---~~P~Glald~~~~~LY~aD~~~~~I~~~~~d--G~~~~~---~~~~  211 (619)
T 3s94_A          142 YWTDWGEVPKIERAGMD-GSSRFIIINSE-I---YWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQA---VVKG  211 (619)
T ss_dssp             EEEECSSSCEEEEEETT-SCSCEEEECSS-C---SSEEEEEEETTTTEEEEEETTTCCEEEESSS--CCEEC--------
T ss_pred             EEeccCCCCEEEEEECC-CCceEEEEeCC-C---CCCcEEEEEccCCEEEEEeCCCCeEEEecCC--CCccEE---EEeC
Confidence            55442  3566666764 43333332111 1   1678999999888787664  6788888887  433322   1121


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL  194 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  194 (334)
                      ......++++..+ . ++++-...+.|...|..+++..
T Consensus       212 ~~~~P~gi~~~~~-~-ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          212 SLPHPFALTLFED-I-LYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             ----CCCEEESSS-E-EEEECTTTCSEEEEESSSCCCC
T ss_pred             CCCCceEEEEeCC-E-EEEecCCCCEEEEEECCCCccc
Confidence            1222346677655 3 6666666788999888776543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.27  E-value=0.0012  Score=54.83  Aligned_cols=234  Identities=11%  Similarity=0.027  Sum_probs=118.8

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC----C
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF----T   77 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~----~   77 (334)
                      +..+.++|.|+|++ +++..+|.|++++. .++ . .+...        . ...........+++       +|+    +
T Consensus        29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~-~G~-~-~~~~~--------~-v~~~g~~g~~gia~-------~pdf~~~g   88 (354)
T 3a9g_A           29 EVPWSIAPLGGGRY-LVTERPGRLVLISP-SGK-K-LVASF--------D-VANVGEAGLLGLAL-------HPEFPKKS   88 (354)
T ss_dssp             SCEEEEEEEETTEE-EEEETTTEEEEECS-SCE-E-EEEEC--------C-CCCSTTCSEEEEEE-------CTTTTTSC
T ss_pred             CCCeEEEEcCCCeE-EEEeCCCEEEEEeC-CCc-e-Eeecc--------c-eeecCCCceeeEEe-------CCCCCcCC
Confidence            45678999999984 45566799999973 333 2 00000        0 00011133555555       555    4


Q ss_pred             cEEEEeeC---C----CcEEEEeCCCC--e---e--e-EEEcC-ccccccccceeEEEEcCCCCEEEEeeC---------
Q psy2305          78 SYFLCSSM---Y----APIHLWDSVGG--E---I--K-ATYRP-YNQVDEVTHAYSLAFSLDGNKIYAGFL---------  132 (334)
Q Consensus        78 ~~l~~~~~---d----~~i~iwd~~~~--~---~--~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~d---------  132 (334)
                      .+.++-+.   +    ..|..|+...+  .   .  + ..+.. ..|     ....++|.|||.+.++..+         
T Consensus        89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h-----~~~~l~~~pDG~Lyvt~G~~~~~~~~~d  163 (354)
T 3a9g_A           89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH-----NGGRIRFGPDGMLYITTGDAADPRLAQD  163 (354)
T ss_dssp             EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSC-----CCCCEEECTTSCEEEECCCTTCGGGGTC
T ss_pred             EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCc-----CCceEEECCCCcEEEEECCCCCCccccC
Confidence            44444332   3    56777776543  1   1  1 11221 112     3468999999986665332         


Q ss_pred             -----CcEEEEEcCCCCCeee-----eecccccccccceEEEEEcC-CCCcEEEEeecCC---eEEEEECCC--------
Q psy2305         133 -----SEVKIFSTDRPGRECV-----SRNLKPWFRKNIVSAIAINP-VHPDICALGTYSK---IIGLFSDSD--------  190 (334)
Q Consensus       133 -----~~i~i~d~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg---~i~i~d~~~--------  190 (334)
                           +.|.-++.+  +....     ...+...++. ....++|+| ++. ++++-....   .|.+...-.        
T Consensus       164 ~~~~~G~I~ri~~d--G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~  239 (354)
T 3a9g_A          164 LSSLAGKILRVDEE--GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLAT  239 (354)
T ss_dssp             TTCCSSEEEEECTT--SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCC
T ss_pred             CCCCCeEEEEEcCC--CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCccc
Confidence                 334444443  32100     0000122332 346899999 565 555432221   244332110        


Q ss_pred             --------CCceEeeccCCCCeEEEEEc-------cCCcEEEeeecCCCeEEEEEccCCCccc--eeecccccCCceEEE
Q psy2305         191 --------GRPLFFLKGHNGGITHLEFS-------SNGILLFSGARKDCEIICWDLRNPGCIL--HTFPRQVSTNQRVYF  253 (334)
Q Consensus       191 --------~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~  253 (334)
                              ..++..+.........++|.       .+|+++++.- ..+.|...++...+...  ..+... ....+..+
T Consensus       240 g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~-~~~~v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v  317 (354)
T 3a9g_A          240 GKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL-RGSMLAAVNFGDNMEVRKISTFFKN-VFGRLRDV  317 (354)
T ss_dssp             SCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET-TTTEEEEEEECGGGCEEEEEEECTT-TSCCEEEE
T ss_pred             CCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc-CCCEEEEEEECCCCcccceeeeccC-CCCCeeEE
Confidence                    01223331123457788883       4676666655 67888888887522221  122111 13457788


Q ss_pred             EecCCCceEEeee
Q psy2305         254 DLTSCSNYLLSGN  266 (334)
Q Consensus       254 ~~s~~~~~l~~~~  266 (334)
                      ++.|||.++++..
T Consensus       318 ~~~pDG~lyv~~~  330 (354)
T 3a9g_A          318 VIDDDGGILISTS  330 (354)
T ss_dssp             EECTTSCEEEEEC
T ss_pred             EECCCCcEEEEEe
Confidence            8999997666553

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.24  E-value=0.0015  Score=54.73  Aligned_cols=197  Identities=9%  Similarity=0.089  Sum_probs=127.7

Q ss_pred             ecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecc
Q psy2305          73 IDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        73 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      .+|..+.+|.=. ..++.++|+++.+.++.+...+      .|.-=.|-.+ +.|+...+..|.-|++.....+.+....
T Consensus        73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~~e------~VvfWkWis~-~~l~lVT~taVyHWsi~~~s~P~kvFdR  144 (494)
T 1bpo_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVKMFDR  144 (494)
T ss_dssp             ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS------CCCEEEEEET-TEEEEECSSEEEEEESSSSCCCEEEEEC
T ss_pred             eCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC------CceEEEecCC-CeEEEEcCCeeEEecccCCCCchhheec
Confidence            377888877765 6789999999999888877544      4555556544 4566667889999999753333331110


Q ss_pred             cccccccceEEEEEcCCCCcEEEEee-------cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC---cEEEeeec-
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGT-------YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG---ILLFSGAR-  221 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~-  221 (334)
                      ...-....|..-..+++.+ +++..+       -.|.+.+|..+ .+..+.+.+|.+.-..+...-+.   +.++.+.+ 
T Consensus       145 ~~~L~~~QIInY~~d~~~k-W~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~  222 (494)
T 1bpo_A          145 HSSLAGCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG  222 (494)
T ss_dssp             CGGGTTCEEEEEEECTTSS-EEEEEEEEEETTEEEEEEEEEEST-TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred             chhcccceEEEEEECCCCC-eEEEEeecccCCcccceEEEeecc-ccccchheeeeeeeEEEecCCCCCCceEEEEEEec
Confidence            0111245677888899999 665432       34788999975 44567788886655444443221   24454542 


Q ss_pred             -CCCeEEEEEccCC--Cccce-------eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         222 -KDCEIICWDLRNP--GCILH-------TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       222 -~d~~i~iwd~~~~--~~~~~-------~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                       ..+.+.|.++..+  +.+..       .+..........++..|+.-..++..+.-|.|++||++++
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg  290 (494)
T 1bpo_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG  290 (494)
T ss_dssp             TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred             CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc
Confidence             1278999998643  11111       1112222445677888998888888899999999999998

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.24  E-value=1.3e-05  Score=72.96  Aligned_cols=182  Identities=10%  Similarity=0.005  Sum_probs=106.6

Q ss_pred             CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCC--Ceeeeecccccccccce
Q psy2305          86 YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPG--RECVSRNLKPWFRKNIV  161 (334)
Q Consensus        86 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v  161 (334)
                      .+.|+..++.+.+....+....      .+..++|.+.+..|+.+.  .+.|+.+++....  .....   .........
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~------~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~---~i~~~~~~P  455 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT---VISRDIQAP  455 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCT------TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC---BCCSCC--C
T ss_pred             ccceEEEeCCCCcceeeeccCc------ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE---EEeCCCCCc
Confidence            3567888877655443333221      567899999877777664  6889999987310  11111   111112235


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCC-CeEEEEEccCCCcccee
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKD-CEIICWDLRNPGCILHT  240 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d-~~i~iwd~~~~~~~~~~  240 (334)
                      ..|++.+.+.+++++-...+.|.++++........+.........++++|.+.+|+.+.... +.|..+++..  .....
T Consensus       456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG--~~~~~  533 (699)
T 1n7d_A          456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYS  533 (699)
T ss_dssp             CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS--CCCCE
T ss_pred             ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC--CCeeE
Confidence            57888865553556556678999999865443333332234457889999766666554122 6777777653  32333


Q ss_pred             ecccccCCceEEEEecCCCceEEee-ecCCcEEEEeCCCC
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSG-NTNGDLSIWNVNTS  279 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~  279 (334)
                      +... .......++|+|++..|+.+ ...+.|..+++...
T Consensus       534 l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          534 LVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             ESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             EEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            3211 12334568899876655544 45678999998753

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.20  E-value=0.00012  Score=60.42  Aligned_cols=189  Identities=10%  Similarity=0.036  Sum_probs=101.6

Q ss_pred             eEEEEcCCCcEEEEee------------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeee----eceeEEEEEEec
Q psy2305           5 EDVDEAPDGTCLLTNS------------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK----EGGIIYDYVWYP   68 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~------------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~   68 (334)
                      ..+...|+|..+++++            .+|.|.++|..+.....           ..-.+.+.    ..-....+...+
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-----------~~l~~~g~~~~~~~f~PhGi~~~~  121 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-----------SELEIIGNTLDISSFNPHGISTFI  121 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-----------EECEEECSSCCGGGCCEEEEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-----------EEEEccCCCCCcCceeeeeeEEEE
Confidence            4677888886554441            68999999987432110           00011110    011223333321


Q ss_pred             ccceecCCCc-EEEEe-eC--CCcEEEEeCCCC-ee---eEEEcCccccccccceeEEEEcCCCCEEEEee----C----
Q psy2305          69 KTSSIDGFTS-YFLCS-SM--YAPIHLWDSVGG-EI---KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----L----  132 (334)
Q Consensus        69 ~~~~~s~~~~-~l~~~-~~--d~~i~iwd~~~~-~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d----  132 (334)
                           ..++. +|+++ ..  +.+|.+|++..+ ..   +..+...    .....+.+++.++|.+.++..    |    
T Consensus       122 -----d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~----~~~~pND~~v~~~G~fyvt~~~~ftd~~~~  192 (355)
T 3sre_A          122 -----DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK----LLPSVNDIVAVGPEHFYATNDHYFIDPYLK  192 (355)
T ss_dssp             -----CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT----TCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred             -----CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccC----CCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence                 12343 34443 22  457778766542 22   2333321    122678999999998777642    1    


Q ss_pred             --------CcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCc--eEeeccCC
Q psy2305         133 --------SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRP--LFFLKGHN  201 (334)
Q Consensus       133 --------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~--~~~~~~~~  201 (334)
                              ..=.+|-+.. + .+.    .....-...+.++|+||++.++++-+..+.|..|++.. ++.  ...+ ...
T Consensus       193 ~~e~~~~~~~g~vyr~d~-~-~~~----~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~  265 (355)
T 3sre_A          193 SWEMHLGLAWSFVTYYSP-N-DVR----VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFD  265 (355)
T ss_dssp             HHHHHTTCCCEEEEEECT-T-CCE----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECS
T ss_pred             cchhhccCCccEEEEEEC-C-eEE----EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCC
Confidence                    1223444432 2 122    12223345789999999983444455678999999863 322  2233 234


Q ss_pred             CCeEEEEEcc-CCcEEEeee
Q psy2305         202 GGITHLEFSS-NGILLFSGA  220 (334)
Q Consensus       202 ~~i~~~~~~~-~~~~l~~~~  220 (334)
                      +....++..+ +|++.+++.
T Consensus       266 g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          266 TLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             SEEEEEEECTTTCCEEEEEE
T ss_pred             CCCceEEEeCCCCcEEEEec
Confidence            5677899998 598777554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.17  E-value=0.0012  Score=54.91  Aligned_cols=244  Identities=7%  Similarity=-0.041  Sum_probs=119.6

Q ss_pred             cccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCcc--ccccccceeEEEEcCC---CCEEEEee-C--------C
Q psy2305          68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYN--QVDEVTHAYSLAFSLD---GNKIYAGF-L--------S  133 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~---~~~l~~~~-d--------~  133 (334)
                      |..++|.|+|+.|+++...|.|++++. .+.....+....  ..........++++|+   +..|+... .        .
T Consensus        20 P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           20 PWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             EEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             cEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            455667899983444556799999985 343321111110  0001125689999996   55555432 1        2


Q ss_pred             cEEEEEcCCCCCeeeeecc---ccc---ccccceEEEEEcCCCCcEEEEeec-------------CCeEEEEECCCCC--
Q psy2305         134 EVKIFSTDRPGRECVSRNL---KPW---FRKNIVSAIAINPVHPDICALGTY-------------SKIIGLFSDSDGR--  192 (334)
Q Consensus       134 ~i~i~d~~~~~~~~~~~~~---~~~---~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~~--  192 (334)
                      .|..|++......+.....   .+.   ........++|.|+|. ++++.+.             .|.|.-++....-  
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            4666666532111111000   111   1112245799999997 5554332             2567777764320  


Q ss_pred             ----------ceEee-ccCCCCeEEEEEcc-CCcEEEeeecCCCeEEEEEccCCCc------------------------
Q psy2305         193 ----------PLFFL-KGHNGGITHLEFSS-NGILLFSGARKDCEIICWDLRNPGC------------------------  236 (334)
Q Consensus       193 ----------~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~~~~~------------------------  236 (334)
                                ....+ .++ .....++|+| +|+++++-...++.=.|.-+...+.                        
T Consensus       178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~  256 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI  256 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred             CCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence                      11112 233 2367899999 5654444321121112222221000                        


Q ss_pred             ------cceeecccccCCceEEEEecC-------CCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccc
Q psy2305         237 ------ILHTFPRQVSTNQRVYFDLTS-------CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDC  303 (334)
Q Consensus       237 ------~~~~~~~~~~~~~~~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (334)
                            +...+.   .......+.|..       +|.++++.-..+.|...++..++..         .....+......
T Consensus       257 ~~~~~~P~~~~~---~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~r  324 (353)
T 2g8s_A          257 VAGTEQPVFYWK---DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT---------EDGRILTDRGQR  324 (353)
T ss_dssp             CTTSCCCSEEES---SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE---------EEEEESGGGCCC
T ss_pred             CCCccCCeEEeC---CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe---------eeEEcccCCCCc
Confidence                  000011   012344555643       4667766666777777777653110         011111222346


Q ss_pred             cceeeeccCCCcccceeeEEe-eecceeee
Q psy2305         304 TNGVRWKHHKFERDLLVADAT-CSGQITNV  332 (334)
Q Consensus       304 i~~~~~~~s~~~~~~~~~l~t-~~~d~~i~  332 (334)
                      +.++++  .|||    .++++ -..+|.|+
T Consensus       325 p~~v~~--~pdG----~lyv~td~~~g~I~  348 (353)
T 2g8s_A          325 IRDVRT--GPDG----YLYVLTDESSGELL  348 (353)
T ss_dssp             EEEEEE--CTTS----CEEEEECSTTEEEE
T ss_pred             eeEEEE--CCCC----cEEEEEeCCCCEEE
Confidence            889999  9999    76664 33567664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.12  E-value=0.0024  Score=52.40  Aligned_cols=151  Identities=9%  Similarity=-0.030  Sum_probs=87.1

Q ss_pred             ceeEEEEcCCCCEEEEeeCCcEEEE-EcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC
Q psy2305         114 HAYSLAFSLDGNKIYAGFLSEVKIF-STDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR  192 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  192 (334)
                      .+..+++.+++.+++++.++.+..- |-.  +.....   ........+..+.+.+++. +++ ++.+|.+++.+...++
T Consensus       164 ~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G~tW~~---~~~~~~~~~~~~~~~~~g~-~~~-~~~~G~~~~s~~D~G~  236 (327)
T 2xbg_A          164 VMRNLNRSPSGEYVAVSSRGSFYSTWEPG--QTAWEP---HNRTTSRRLHNMGFTPDGR-LWM-IVNGGKIAFSDPDNSE  236 (327)
T ss_dssp             CEEEEEECTTSCEEEEETTSSEEEEECTT--CSSCEE---EECCSSSCEEEEEECTTSC-EEE-EETTTEEEEEETTEEE
T ss_pred             ceEEEEEcCCCcEEEEECCCcEEEEeCCC--CCceeE---CCCCCCCccceeEECCCCC-EEE-EeCCceEEEecCCCCC
Confidence            6789999999988888776655443 321  222221   1123456788999999987 554 5567888777422232


Q ss_pred             ceEeec----cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccc-ccCCceEEEEecCCCceEEeeec
Q psy2305         193 PLFFLK----GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQ-VSTNQRVYFDLTSCSNYLLSGNT  267 (334)
Q Consensus       193 ~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~  267 (334)
                      .-..+.    .....+..+.+.+++..++++.  ++.+ ++..+. ++.-..+... .....+.++.|.+++. +++++.
T Consensus       237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~--~g~i-~~S~Dg-G~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~  311 (327)
T 2xbg_A          237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG--AGAL-LCSQDG-GQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQ  311 (327)
T ss_dssp             EECCCBCTTSSCCSCEEEEEESSSSCEEEEES--TTCE-EEESST-TSSCEECGGGTTSSSCCCEEEEEETTE-EEEECS
T ss_pred             eeEeccCCcccCCcceEEEEecCCCEEEEEeC--CCeE-EEeCCC-CcccEEcCccCCCCCCeEEEEEECCCc-eEEEcC
Confidence            222221    1223588999998887766654  6766 333332 4433333321 1123455677765555 445557


Q ss_pred             CCcEEEEeC
Q psy2305         268 NGDLSIWNV  276 (334)
Q Consensus       268 dg~i~iwd~  276 (334)
                      +|.|.-++-
T Consensus       312 ~G~i~~~~~  320 (327)
T 2xbg_A          312 KGILLRYVT  320 (327)
T ss_dssp             TTEEEEECC
T ss_pred             CceEEEEcC
Confidence            888776654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.11  E-value=0.0025  Score=52.09  Aligned_cols=206  Identities=12%  Similarity=0.132  Sum_probs=117.1

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE--E-EEee-C--C
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY--F-LCSS-M--Y   86 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~--l-~~~~-~--d   86 (334)
                      ..+++.....+-+.+||+ .++..+              .+.   .+.++.+...|.   |.-.|+.  + ++.. .  +
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~--------------~~~---~g~~nnVD~r~~---~~l~g~~~dla~as~R~~~~   98 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLH--------------SYN---TGKLNNVDIRYD---FPLNGKKVDIAAASNRSEGK   98 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEE--------------EEC---CSCEEEEEEEEE---EEETTEEEEEEEEEECSTTC
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEE--------------Ecc---CCCcccEEEecc---cccCCceEeEEEEeCCCCCC
Confidence            345555567788999999 555442              222   234555554431   1113332  2 3333 3  5


Q ss_pred             CcEEEEeC--CCCeeeEEEcCc--cccccccceeEEEE--cCC-CC-EEEEee-CCcEEEEEcCCCCC-eeeeecccccc
Q psy2305          87 APIHLWDS--VGGEIKATYRPY--NQVDEVTHAYSLAF--SLD-GN-KIYAGF-LSEVKIFSTDRPGR-ECVSRNLKPWF  156 (334)
Q Consensus        87 ~~i~iwd~--~~~~~~~~~~~~--~~~~~~~~v~~~~~--~~~-~~-~l~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~  156 (334)
                      ++|.+|++  .++. +..+...  .-......+..+++  +|. ++ ++++.. +|.+..|++...+. ......+....
T Consensus        99 n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           99 NTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            78999966  3443 4444221  00000025677888  774 44 455555 89999999843111 01110001122


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECC-----CCCceEeec-cC-CCCeEEEEE--ccCCc-EEEeeecCCCeE
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDS-----DGRPLFFLK-GH-NGGITHLEF--SSNGI-LLFSGARKDCEI  226 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~-~~-~~~i~~~~~--~~~~~-~l~~~~~~d~~i  226 (334)
                      ....+..+...+... .|+.+-++..|..|+.+     +++.+..+. ++ ...+..|++  .++++ +|++++..+.++
T Consensus       178 lgsq~EgcvvDd~~g-~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~  256 (355)
T 3amr_A          178 MNSQTEGMAADDEYG-RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY  256 (355)
T ss_dssp             CSSCEEEEEEETTTT-EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred             CCCCcceEEEcCCCC-eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence            245678888988877 88889998878788854     233444442 22 246888888  45566 677777568899


Q ss_pred             EEEEccCCCccceee
Q psy2305         227 ICWDLRNPGCILHTF  241 (334)
Q Consensus       227 ~iwd~~~~~~~~~~~  241 (334)
                      .+||.....+.+..+
T Consensus       257 ~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          257 AIYDRQGKNKYVADF  271 (355)
T ss_dssp             EEEESSTTCCEEEEE
T ss_pred             EEEECCCCCcEEEEE
Confidence            999997434545555

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.99  E-value=0.0016  Score=54.41  Aligned_cols=149  Identities=13%  Similarity=0.053  Sum_probs=96.5

Q ss_pred             EEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccc--cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC----
Q psy2305         119 AFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWF--RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR----  192 (334)
Q Consensus       119 ~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----  192 (334)
                      ....+|..++.+.++.||.-++.. +...+..  ....  .-..+..+..+|+|. +||..+ +..|.|..+..+.    
T Consensus        27 ~~~~n~t~i~~a~~n~iR~~~i~~-~~~Yk~L--~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           27 FSSQNGTRIVFIQDNIIRWYNVLT-DSLYHSL--NFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVE  101 (452)
T ss_dssp             EEETTTTEEEEEETTEEEEEETTT-CSSCEEE--ECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCC
T ss_pred             EEEcCCCEEEEEECCEEEEEECCC-CCcceEE--ecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCc
Confidence            345567778877788888888774 2222211  1221  122577899999999 888765 5689999886331    


Q ss_pred             --------ceEeecc------CCCCeEEEEEccC---CcEEEeeecCCCeEEEEEccCCC-ccceeecc-------cccC
Q psy2305         193 --------PLFFLKG------HNGGITHLEFSSN---GILLFSGARKDCEIICWDLRNPG-CILHTFPR-------QVST  247 (334)
Q Consensus       193 --------~~~~~~~------~~~~i~~~~~~~~---~~~l~~~~~~d~~i~iwd~~~~~-~~~~~~~~-------~~~~  247 (334)
                              ..+.+.-      ...+|..+.|+|-   +..|++-. .|+.|++||+.... .+. .+..       ....
T Consensus       102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~  179 (452)
T 3pbp_A          102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK-EDDTITMFDILNSQEKPI-VLNKPNNSFGLDARV  179 (452)
T ss_dssp             CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE-TTSCEEEEETTCTTSCCE-EESCCCSEEESCSSC
T ss_pred             ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe-cCCEEEEEEcccCCCCCc-chhccccccCCCccc
Confidence                    0112221      2567999999995   45788888 89999999998522 222 2221       1112


Q ss_pred             CceEEEEecCCCceEEeee--cCCcEEEE
Q psy2305         248 NQRVYFDLTSCSNYLLSGN--TNGDLSIW  274 (334)
Q Consensus       248 ~~~~~~~~s~~~~~l~~~~--~dg~i~iw  274 (334)
                      ..+.+++|.+++-.|...+  ..|.|+-.
T Consensus       180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          180 NDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            5677899999887776644  77877644

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.95  E-value=0.0037  Score=50.52  Aligned_cols=186  Identities=8%  Similarity=0.016  Sum_probs=93.5

Q ss_pred             CCcEEEEeeCC-----CcEEEEeCCCCe---eeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEcC
Q psy2305          76 FTSYFLCSSMY-----APIHLWDSVGGE---IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFSTD  141 (334)
Q Consensus        76 ~~~~l~~~~~d-----~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~  141 (334)
                      ++++++.|+.+     ..+.+||+.+++   ....-......    .-.+++.. +++.++.|+ +     ..+.+||+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r----~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~  136 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRR----GLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPN  136 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCC----BSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCc----cceeEEEE-CCEEEEEcccCCCcccceEEEEcCC
Confidence            67777887754     468899988766   33322111110    11222222 566666654 2     368888987


Q ss_pred             CCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC-----CeEEEEECCCCCceE--eeccCCCCeEEEEEccCCc
Q psy2305         142 RPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-----KIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGI  214 (334)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~  214 (334)
                      +.  .....+ ...........+.+  ++. +++.|+.+     ..+.+||+.+.+-..  .+.........+.  -+++
T Consensus       137 ~~--~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~  208 (301)
T 2vpj_A          137 ID--QWSMLG-DMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDH  208 (301)
T ss_dssp             TT--EEEEEE-ECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTE
T ss_pred             CC--eEEECC-CCCCCcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCE
Confidence            52  222111 11111112222222  555 77777755     458899987653222  1211111112222  2567


Q ss_pred             EEEeeecCC-----CeEEEEEccCCCccceeecccccC-CceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305         215 LLFSGARKD-----CEIICWDLRNPGCILHTFPRQVST-NQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS  279 (334)
Q Consensus       215 ~l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  279 (334)
                      .++.|+ .+     ..+.+||+.+ .. -..+...... .....+.  -++++++.|+.+     ..+.+||+++.
T Consensus       209 i~v~GG-~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          209 IYVVGG-FDGTAHLSSVEAYNIRT-DS-WTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEEECC-BCSSSBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             EEEEeC-CCCCcccceEEEEeCCC-Cc-EEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            777776 43     4688999875 32 1222211111 1111222  267777877765     35788888875

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.95  E-value=0.0058  Score=50.76  Aligned_cols=67  Identities=10%  Similarity=0.156  Sum_probs=40.7

Q ss_pred             CCeEEEEEcc-------CCcEEEeeecCCCeEEEEEccCCCcccee--ecccccCCceEEEEecCCCceEEeee-cCCcE
Q psy2305         202 GGITHLEFSS-------NGILLFSGARKDCEIICWDLRNPGCILHT--FPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDL  271 (334)
Q Consensus       202 ~~i~~~~~~~-------~~~~l~~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i  271 (334)
                      .....+.|.+       +|+++++.- ..+.|...++.. +.....  +.. .....+..+++.|||.++++.. .+|.|
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~-~~~~v~~~~~~~-~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGAL-KDKDVIVMSVNG-DKVTEDGRILT-DRGQRIRDVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEET-TTTEEEEEEEET-TEEEEEEEESG-GGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEc-cCCEEEEEEeCC-CeEeeeEEccc-CCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence            3567788863       466666665 678888888874 332221  111 1134677899999998766533 34543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.94  E-value=0.017  Score=55.72  Aligned_cols=177  Identities=12%  Similarity=0.089  Sum_probs=108.7

Q ss_pred             cEEEEeCCCCeeeEEEcCccccccccceeEEE---EcCC-CCEEEEee-----------CCcEEEEEcCCCCCeeeeecc
Q psy2305          88 PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLA---FSLD-GNKIYAGF-----------LSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        88 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~-~~~l~~~~-----------d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      .|++.|..+.+.+..++.... .   .+.+++   |..+ ..++++|.           .|.|.+|++..  ..+...  
T Consensus       808 ~i~lidp~t~~~i~~~~l~~n-E---~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~--~kL~lv--  879 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQN-E---YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSD--GKLQTV--  879 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTT-E---EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEET--TEEEEE--
T ss_pred             EEEEEeCCCCeEEEEEeCCCC-c---ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEEC--CEEEEE--
Confidence            577888877777666554322 1   344444   4433 36777542           26799999973  333321  


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEcc
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      .....++++++++-- +|  +|++| ...+|++|++...+.+..-..+-..|..+.....+.++++|. .-..+.++..+
T Consensus       880 ~~~~v~g~v~al~~~-~g--~Lla~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD-~~~Sv~~~~y~  954 (1158)
T 3ei3_A          880 AEKEVKGAVYSMVEF-NG--KLLAS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGD-LMRSVLLLAYK  954 (1158)
T ss_dssp             EEEEESSCEEEEEEE-TT--EEEEE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEE-SSBCEEEEEEE
T ss_pred             EEEEcCCcCEEEeee-CC--EEEEE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEE-hhheEEEEEEE
Confidence            234457788888754 34  44433 468999999976654441111111233333333577888888 77788887766


Q ss_pred             CCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         233 NPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      .....+..+..+....+++++.+-.+ ..++.+..+|.+.+.....
T Consensus       955 ~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          955 PMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             TTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred             cCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence            54455666666666777888777544 4667788899999998765

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.91  E-value=0.0039  Score=50.46  Aligned_cols=175  Identities=9%  Similarity=0.034  Sum_probs=97.2

Q ss_pred             cCCCcEEEEeeCC--------------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee---CCcEE
Q psy2305          74 DGFTSYFLCSSMY--------------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---LSEVK  136 (334)
Q Consensus        74 s~~~~~l~~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~  136 (334)
                      ++++++|..+...              ..|+..++..++... +..  .       ....|+++++.|+-..   ++.-.
T Consensus        61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~-------~~~~~s~~g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--D-------PCIYASLIGNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--S-------CEEEEEEETTEEEEEEESSSSCEE
T ss_pred             EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--C-------CccEEEEeCCEEEEEeecCCCCce
Confidence            5688888776542              357777776554333 321  1       2346788898888443   44444


Q ss_pred             EEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee-cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcE
Q psy2305         137 IFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT-YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGIL  215 (334)
Q Consensus       137 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  215 (334)
                      ||-+...+.....    +..+..    .+++|+++ .|+-.+ ....|...++..+.....+.   +... ..+.|++.+
T Consensus       131 Iy~~~~dGs~~~~----lt~~~~----~~~~~~g~-~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~  197 (302)
T 3s25_A          131 LYRIRIDGEEKKK----IKNHYL----FTCNTSDR-YFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTN  197 (302)
T ss_dssp             EEEEETTSCCCEE----EESSCC----CCSEEETT-EEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTE
T ss_pred             EEEEECCCCCeEE----EeCCCc----eEeeEECC-EEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCE
Confidence            4444433443332    222222    35678888 555444 36788888886554433333   2222 346699998


Q ss_pred             EEeeecCC-CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee--cCCcEEEEeCCCC
Q psy2305         216 LFSGARKD-CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN--TNGDLSIWNVNTS  279 (334)
Q Consensus       216 l~~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~  279 (334)
                      |+.....+ ..|..-++.  +.....+...    .+.  .|+|++++|+.+.  ..+.|..-++...
T Consensus       198 iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~----~~~--~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          198 VYYMDVNRDNAIVHVNIN--NPNPVVLTEA----NIE--HYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             EEEEEGGGTTEEEEECSS--SCCCEECSCS----CEE--EEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             EEEEEcCCCcEEEEEECC--CCCeEEEeCC----Ccc--eEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            88776222 245454554  4444555422    222  3678888887653  2456777777664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.90  E-value=0.0024  Score=53.48  Aligned_cols=151  Identities=13%  Similarity=0.153  Sum_probs=96.6

Q ss_pred             CCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCee-------
Q psy2305          75 GFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGREC-------  147 (334)
Q Consensus        75 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~-------  147 (334)
                      .+|..++.+- ++.||.-++..+...+.+....+.. ...+..+..+|+|++|+..++..|.|..+..+....       
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~-f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLV-LDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCC-CCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccc-cCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            3555555553 4677777776444444554432011 115778999999999999888899999988422111       


Q ss_pred             --eeecccccc----cccceEEEEEcCCCCc--EEEEeecCCeEEEEECCCC--CceEeec---------cCCCCeEEEE
Q psy2305         148 --VSRNLKPWF----RKNIVSAIAINPVHPD--ICALGTYSKIIGLFSDSDG--RPLFFLK---------GHNGGITHLE  208 (334)
Q Consensus       148 --~~~~~~~~~----~~~~v~~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~--~~~~~~~---------~~~~~i~~~~  208 (334)
                        ..+...+..    ...+|..+.|+|-+.+  .|++-..|+.|++||+...  ++. .+.         .....|.+++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence              100001111    2567999999997542  7888899999999999752  222 232         2236788999


Q ss_pred             EccCCcEEEe--eecCCCeEEEE
Q psy2305         209 FSSNGILLFS--GARKDCEIICW  229 (334)
Q Consensus       209 ~~~~~~~l~~--~~~~d~~i~iw  229 (334)
                      |.+++-.|+.  .+ ..|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t-~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTT-EGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECT-TSCEEEEE
T ss_pred             EcCCCcEEEEEecC-CCCCEEEE
Confidence            9998876666  44 46777644

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.77  E-value=0.01  Score=48.00  Aligned_cols=187  Identities=13%  Similarity=0.119  Sum_probs=93.3

Q ss_pred             CCcEEEEeeCC-----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEcCCCC
Q psy2305          76 FTSYFLCSSMY-----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFSTDRPG  144 (334)
Q Consensus        76 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~  144 (334)
                      ++.+++.|+.+     ..+.+||..+.+....-......    .-.+++.. +++.++.|+ +     ..+.+||+.+  
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~--  133 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRR----STLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKS--  133 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTT--
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccc----cceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCC--
Confidence            67778887754     35889999887654432211110    11222222 556666654 3     3577888875  


Q ss_pred             CeeeeecccccccccceEEEEEcCCCCcEEEEeecC-------CeEEEEECCCCCce--EeeccCCCCeEEEEEccCCcE
Q psy2305         145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-------KIIGLFSDSDGRPL--FFLKGHNGGITHLEFSSNGIL  215 (334)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~  215 (334)
                      ......+ ...........+.+  ++. +++.|+.+       ..+.+||+.+.+-.  ..+.........+.  -+++.
T Consensus       134 ~~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i  207 (302)
T 2xn4_A          134 NEWFHVA-PMNTRRSSVGVGVV--GGL-LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLL  207 (302)
T ss_dssp             TEEEEEC-CCSSCCBSCEEEEE--TTE-EEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEE
T ss_pred             CeEeecC-CCCCcccCceEEEE--CCE-EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEE
Confidence            2222111 11111112222222  455 77777653       35889998765322  12221111112222  25677


Q ss_pred             EEeeecCC-----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC-----cEEEEeCCCC
Q psy2305         216 LFSGARKD-----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG-----DLSIWNVNTS  279 (334)
Q Consensus       216 l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~  279 (334)
                      ++.|+ .+     ..+.+||+.+ .. -..+........-..+. ..++++++.|+.++     .+.+||+.+.
T Consensus       208 yv~GG-~~~~~~~~~~~~yd~~~-~~-W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          208 YAVGG-HDGPLVRKSVEVYDPTT-NA-WRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             EEECC-BSSSSBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEECC-CCCCcccceEEEEeCCC-CC-EeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            77776 43     3688899875 22 12222111111111121 23677888887653     5889998875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.75  E-value=0.0052  Score=59.23  Aligned_cols=195  Identities=9%  Similarity=0.072  Sum_probs=122.6

Q ss_pred             ecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecc
Q psy2305          73 IDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        73 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      .+|..+.+|.-. ..++.|+|+++.+.++.+....      +|.-=.|-.+ +.|+...+..|.-|++.....+.+    
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e------~VvfWkWis~-~~l~lVT~~aVyHW~~~~~s~P~k----  140 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVK----  140 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC------CceEEEecCC-CeeEEEcCCeEEEeccCCCCccHH----
Confidence            477877777654 6789999999888777766533      4555566544 356656678899999974222222    


Q ss_pred             ccccc----ccceEEEEEcCCCCcEEEEee-------cCCeEEEEECCCCCceEeeccCCCCeEEEEEc--cC-CcEEEe
Q psy2305         153 KPWFR----KNIVSAIAINPVHPDICALGT-------YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFS--SN-GILLFS  218 (334)
Q Consensus       153 ~~~~~----~~~v~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~l~~  218 (334)
                      .+..|    ...|..-..+++.+ +++..+       -.|.+.+|..+. +..+.+.||.+.-..+...  +. ...++.
T Consensus       141 ~fdR~~~L~~~QIinY~~d~~~k-W~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f  218 (1630)
T 1xi4_A          141 MFDRHSSLAGCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCF  218 (1630)
T ss_pred             HHhcchhcccCeeEEeeeCCCCC-eEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEE
Confidence            22223    45677788899998 665432       347899999754 3455667776655444442  11 223443


Q ss_pred             eec--CCCeEEEEEccCC--Cccce-------eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCC
Q psy2305         219 GAR--KDCEIICWDLRNP--GCILH-------TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL  281 (334)
Q Consensus       219 ~~~--~d~~i~iwd~~~~--~~~~~-------~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  281 (334)
                      +.+  ..+.+.|.++..+  +.+..       .+..........++..++.-..+...+.-|.++++|+.++..
T Consensus       219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC  292 (1630)
T ss_pred             EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence            331  1368899888642  11111       111111234456677888888888888999999999999843

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.74  E-value=0.011  Score=47.62  Aligned_cols=189  Identities=11%  Similarity=0.072  Sum_probs=93.2

Q ss_pred             CCcEEEEee-CC-----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEcCCC
Q psy2305          76 FTSYFLCSS-MY-----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFSTDRP  143 (334)
Q Consensus        76 ~~~~l~~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~  143 (334)
                      ++.+++.|+ .+     ..+.+||+.+++....-......    .-.+++. .++..++.|+ +     ..+.+||+.+.
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~   88 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKR----RYVASVS-LHDRIYVIGGYDGRSRLSSVECLDYTAD   88 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCC----BSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhh----ccccEEE-ECCEEEEEcCCCCCccCceEEEEECCCC
Confidence            556677776 33     36889998877644321111110    1122222 3456666654 3     46889998863


Q ss_pred             CCe-eeeecccccccccceEEEEEcCCCCcEEEEeecC-----CeEEEEECCCCCc--eEeeccCCCCeEEEEEccCCcE
Q psy2305         144 GRE-CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-----KIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNGIL  215 (334)
Q Consensus       144 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~  215 (334)
                      ... ....+ .+.........+.+  ++. +++.|+.+     ..+.+||..+.+-  +..+......-..+.  -+++.
T Consensus        89 ~~~~W~~~~-~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i  162 (301)
T 2vpj_A           89 EDGVWYSVA-PMNVRRGLAGATTL--GDM-IYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVI  162 (301)
T ss_dssp             TTCCCEEEC-CCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEE
T ss_pred             CCCeeEECC-CCCCCccceeEEEE--CCE-EEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEE
Confidence            300 11111 11111122222222  555 77777654     3688999876542  222221111112222  26777


Q ss_pred             EEeeecCC-----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305         216 LFSGARKD-----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS  279 (334)
Q Consensus       216 l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  279 (334)
                      ++.|+ .+     ..+.+||+.+ .. -..+..........++. .-++++++.|+.+     ..+.+||+.+.
T Consensus       163 yv~GG-~~~~~~~~~~~~~d~~~-~~-W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          163 YCLGG-YDGLNILNSVEKYDPHT-GH-WTNVTPMATKRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             EEECC-BCSSCBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEECC-CCCCcccceEEEEeCCC-Cc-EEeCCCCCcccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            77776 44     4588888875 22 12221111111111121 1257777777764     46889999875

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.70  E-value=0.013  Score=47.32  Aligned_cols=186  Identities=8%  Similarity=0.029  Sum_probs=93.7

Q ss_pred             CCcEEEEeeCC----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C------CcEEEEEcCCCC
Q psy2305          76 FTSYFLCSSMY----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L------SEVKIFSTDRPG  144 (334)
Q Consensus        76 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d------~~i~i~d~~~~~  144 (334)
                      ++.+++.|+.+    ..+.+||+.+++....-......    .-.+++. -++++++.|+ +      ..+.+||+.+. 
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~-  128 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR----DSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTE-  128 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC----BSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTT-
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc----cceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCC-
Confidence            67777887754    56888999887654432221111    1112222 2566666654 3      46888998852 


Q ss_pred             CeeeeecccccccccceEEEEEcCCCCcEEEEeec---------CCeEEEEECCCCCce--EeeccCCCCeEEEEEccCC
Q psy2305         145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY---------SKIIGLFSDSDGRPL--FFLKGHNGGITHLEFSSNG  213 (334)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~  213 (334)
                       .....+ ...........+.+  ++. +++.|+.         -..+.+||+.+.+-.  ..+......- ++... ++
T Consensus       129 -~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~  201 (306)
T 3ii7_A          129 -SWHTKP-SMLTQRCSHGMVEA--NGL-IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNH-GLVFV-KD  201 (306)
T ss_dssp             -EEEEEC-CCSSCCBSCEEEEE--TTE-EEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TT
T ss_pred             -ceEeCC-CCcCCcceeEEEEE--CCE-EEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcc-eEEEE-CC
Confidence             222111 11111111222222  555 7777764         345889998776322  1121111111 22222 56


Q ss_pred             cEEEeeecCC-----CeEEEEEccCCCccceeeccccc-CCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305         214 ILLFSGARKD-----CEIICWDLRNPGCILHTFPRQVS-TNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS  279 (334)
Q Consensus       214 ~~l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  279 (334)
                      +.++.|+ .+     ..+.+||+.+ .. -..+..... ......+.+  ++++++.|+.+     ..+.+||+.+.
T Consensus       202 ~i~v~GG-~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          202 KIFAVGG-QNGLGGLDNVEYYDIKL-NE-WKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EEEEECC-EETTEEBCCEEEEETTT-TE-EEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EEEEEeC-CCCCCCCceEEEeeCCC-Cc-EEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            6777766 33     4578888875 22 111211101 111122222  67788888754     46888998885

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.68  E-value=0.015  Score=47.22  Aligned_cols=188  Identities=10%  Similarity=0.042  Sum_probs=92.7

Q ss_pred             CCCcEEEEeeCC----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeC----------CcEEEEEc
Q psy2305          75 GFTSYFLCSSMY----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL----------SEVKIFST  140 (334)
Q Consensus        75 ~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d----------~~i~i~d~  140 (334)
                      -++.+++.|+.+    ..+.+||..+++....-......    .-.+++.. ++.+++.|+.          +.+.+||+
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~   97 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPR----SGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNP   97 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccc----ccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECC
Confidence            366777777742    36889999887654321111110    11222222 5555555431          46888888


Q ss_pred             CCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC-----CeEEEEECCCCCceE--eeccCCCCeEEEEEccCC
Q psy2305         141 DRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-----KIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNG  213 (334)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~  213 (334)
                      .+  ......+ .+.........+.+  ++. +++.|+.+     ..+.+||..+.+-..  .+......-..+.+  ++
T Consensus        98 ~~--~~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~  169 (308)
T 1zgk_A           98 MT--NQWSPCA-PMSVPRNRIGVGVI--DGH-IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR  169 (308)
T ss_dssp             TT--TEEEECC-CCSSCCBTCEEEEE--TTE-EEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT
T ss_pred             CC--CeEeECC-CCCcCccccEEEEE--CCE-EEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC
Confidence            75  2222211 11111122222333  555 77777654     358899987653221  12211111122222  56


Q ss_pred             cEEEeeecCC-----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305         214 ILLFSGARKD-----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS  279 (334)
Q Consensus       214 ~~l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  279 (334)
                      +.++.|+ .+     ..+.+||+.+ .. -..+..........++.. -++++++.|+.+     ..+.+||+.+.
T Consensus       170 ~iyv~GG-~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          170 LLYAVGG-FDGTNRLNSAECYYPER-NE-WRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EEEEECC-BCSSCBCCCEEEEETTT-TE-EEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEEEEeC-CCCCCcCceEEEEeCCC-Ce-EeeCCCCCCccccceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            6777766 43     4588888875 22 111111101111111212 267777877764     46899998875

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.64  E-value=0.016  Score=46.83  Aligned_cols=187  Identities=9%  Similarity=0.071  Sum_probs=91.3

Q ss_pred             CcEEEEeeC--CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C----CcEEEEEcCCCCCeeee
Q psy2305          77 TSYFLCSSM--YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L----SEVKIFSTDRPGRECVS  149 (334)
Q Consensus        77 ~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~  149 (334)
                      +.+++.|+.  ...+.+||..+++....-......    .-.+++. -++..++.|+ +    ..+.+||+.+.  ....
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~--~W~~   84 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKR----RDAACVF-WDNVVYILGGSQLFPIKRMDCYNVVKD--SWYS   84 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCC----BSCEEEE-ETTEEEEECCBSSSBCCEEEEEETTTT--EEEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCccc----ceeEEEE-ECCEEEEEeCCCCCCcceEEEEeCCCC--eEEE
Confidence            445666654  357899999887654321111110    1122222 2555666654 3    67888998852  2221


Q ss_pred             ecccccccccceEEEEEcCCCCcEEEEeecC------CeEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEEEeeec
Q psy2305         150 RNLKPWFRKNIVSAIAINPVHPDICALGTYS------KIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILLFSGAR  221 (334)
Q Consensus       150 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~  221 (334)
                      .+ .+.........+.+  ++. +++.|+.+      ..+.+||..+.+-..  .+......-..+.  -+++.++.|+.
T Consensus        85 ~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~  158 (306)
T 3ii7_A           85 KL-GPPTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGS  158 (306)
T ss_dssp             EE-CCSSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCE
T ss_pred             CC-CCCccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCC
Confidence            11 11111112222222  555 77778765      458899987764221  1211111111222  25666666651


Q ss_pred             C--------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305         222 K--------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS  279 (334)
Q Consensus       222 ~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  279 (334)
                      .        -..+.+||+.+ .. -..+..........++.. -++++++.|+.+     ..+.+||+.+.
T Consensus       159 ~~~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          159 LGNNVSGRVLNSCEVYDPAT-ET-WTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             ESCTTTCEECCCEEEEETTT-TE-EEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             CCCCCcccccceEEEeCCCC-Ce-EEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence            1        34578888875 22 222221111111111222 266777777654     46889998875

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.63  E-value=0.019  Score=47.24  Aligned_cols=237  Identities=12%  Similarity=-0.044  Sum_probs=118.0

Q ss_pred             cccceecCCCcEEEEeeCCCcEEEEeCCCCeeeE--EEcCccccccccceeEEEEcCC---CCEEEEe----eCCcEEEE
Q psy2305          68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKA--TYRPYNQVDEVTHAYSLAFSLD---GNKIYAG----FLSEVKIF  138 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~----~d~~i~i~  138 (334)
                      |..++|.|+|+++++-...|.|++++..+++...  .+..... ........|+++|+   +..|+..    .++.|.-|
T Consensus        34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~-~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSP-SGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC-BTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceee-cCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            3456668899977766558999999866555422  1211101 11126789999996   3445432    24566666


Q ss_pred             EcCCCC---Ce---eeeeccccc-ccccceEEEEEcCCCCcEEEEeec-------------CCeEEEEECCCC----C--
Q psy2305         139 STDRPG---RE---CVSRNLKPW-FRKNIVSAIAINPVHPDICALGTY-------------SKIIGLFSDSDG----R--  192 (334)
Q Consensus       139 d~~~~~---~~---~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-------------dg~i~i~d~~~~----~--  192 (334)
                      .+....   ..   ...+...+. .....-..|.|.|+|. +.++.+.             .|.|.-++....    .  
T Consensus       113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf  191 (347)
T 3das_A          113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF  191 (347)
T ss_dssp             EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred             EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence            655310   01   110000111 1122345799999998 6665432             355555564321    0  


Q ss_pred             -ceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc------------------ceeecccccCCceEE
Q psy2305         193 -PLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI------------------LHTFPRQVSTNQRVY  252 (334)
Q Consensus       193 -~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~------------------~~~~~~~~~~~~~~~  252 (334)
                       ....+ .+|.. ...++|+|+|.+.++-...++.=.|--+.. +..                  +..+..+  ......
T Consensus       192 ~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~-G~nyGwP~~~g~~~~~~~~~P~~~~~~~--~~ap~G  267 (347)
T 3das_A          192 PGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKP-GDNYGWPEAEGKGGGSGFHDPVAQWSTD--EASPSG  267 (347)
T ss_dssp             TTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECT-TCBCCTTTCCSSCCCTTCCCCSEEECTT--TCCEEE
T ss_pred             CCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcC-CCEecCCcccCCCCCccccCCcEecCCC--CCCCcc
Confidence             01111 24443 458999998876554321233223333332 111                  1111100  113344


Q ss_pred             EEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEee
Q psy2305         253 FDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       253 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~  325 (334)
                      ++|. +|..++..-..+.|....+......        .+....+.+..+.+.+++.  .|||    .++++.
T Consensus       268 ~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~--------~~~e~~l~~~~gR~~dv~~--~pDG----~lyv~t  325 (347)
T 3das_A          268 IAYA-EGSVWMAGLRGERLWRIPLKGTAAA--------ADPQAFLEGEYGRLRTVAP--AGGD----KLWLVT  325 (347)
T ss_dssp             EEEE-TTEEEEEESTTCSEEEEEEETTEES--------SCCEEESTTTSSCEEEEEE--EETT----EEEEEE
T ss_pred             eEEE-cCceeeccccCCEEEEEEecCCcee--------cceEEeecCCCCCccEEEE--CCCC----cEEEEE
Confidence            5554 3555555444556666666543110        0111223333457899999  9999    765554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.58  E-value=0.062  Score=51.87  Aligned_cols=205  Identities=12%  Similarity=0.127  Sum_probs=111.6

Q ss_pred             eeeeeceeEEEEEEecccceecC-CCcEEEEee----------CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEc
Q psy2305          53 LKIKEGGIIYDYVWYPKTSSIDG-FTSYFLCSS----------MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS  121 (334)
Q Consensus        53 ~~~~~~~~v~~~~~~~~~~~~s~-~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  121 (334)
                      +.....+.+.+++-    +.|.. ...+|++|.          ..|.|.++++..++.. .+.....   .++|++++--
T Consensus       823 ~~l~~nE~~~sv~~----v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~-lv~~~~v---~g~v~al~~~  894 (1158)
T 3ei3_A          823 HQFLQNEYALSLVS----CKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ-TVAEKEV---KGAVYSMVEF  894 (1158)
T ss_dssp             EECCTTEEEEEEEE----ECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE-EEEEEEE---SSCEEEEEEE
T ss_pred             EeCCCCcceEEEEE----EEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE-EEEEEEc---CCcCEEEeee
Confidence            33334455555554    23333 246788775          3478999998754432 2221111   1267777644


Q ss_pred             CCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCC-CCceEee--c
Q psy2305         122 LDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD-GRPLFFL--K  198 (334)
Q Consensus       122 ~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~--~  198 (334)
                       +| +|++|-...+++|++.. .+.+..   ....+. .+..+.....++ +++.|..-..|.++..+. ...+..+  .
T Consensus       895 -~g-~Lla~ig~~l~vy~l~~-~~~L~~---~~~~~~-~i~~~~l~~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D  966 (1158)
T 3ei3_A          895 -NG-KLLASINSTVRLYEWTT-EKELRT---ECNHYN-NIMALYLKTKGD-FILVGDLMRSVLLLAYKPMEGNFEEIARD  966 (1158)
T ss_dssp             -TT-EEEEEETTEEEEEEECT-TSCEEE---EEEECC-CSCEEEEEEETT-EEEEEESSBCEEEEEEETTTTEEEEEEEC
T ss_pred             -CC-EEEEEcCCEEEEEECCC-CceEEE---Eeeccc-cEEEEEEeccCC-EEEEEEhhheEEEEEEEcCCCeEEEEEee
Confidence             34 67777788999999985 333321   111111 133323333455 888888777777655432 2222222  2


Q ss_pred             cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCC------ccceeecccccCCceEEEE---ecCC---------Cc
Q psy2305         199 GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPG------CILHTFPRQVSTNQRVYFD---LTSC---------SN  260 (334)
Q Consensus       199 ~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~---~s~~---------~~  260 (334)
                      .....++++.+-.++ .++.+. .+|.+.+.......      +.+........+..+.++.   +.+.         ..
T Consensus       967 ~~~~~vta~~~ld~~-t~l~aD-~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~ 1044 (1158)
T 3ei3_A          967 FNPNWMSAVEILDDD-NFLGAE-NAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQG 1044 (1158)
T ss_dssp             CSCBCEEEEEEEETT-EEEEEE-TTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEE
T ss_pred             cccccEEEEEEEccC-cEEEEc-CCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccc
Confidence            245678888887655 566677 79999998776411      1111111111234455553   2332         23


Q ss_pred             eEEeeecCCcEEEEe
Q psy2305         261 YLLSGNTNGDLSIWN  275 (334)
Q Consensus       261 ~l~~~~~dg~i~iwd  275 (334)
                      .++.++.+|.|-+.-
T Consensus      1045 ~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A         1045 SVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp             EEEEEETTSCEEEEE
T ss_pred             eEEEEecCCEEEEEE
Confidence            567778888887663

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.56  E-value=0.032  Score=48.00  Aligned_cols=108  Identities=12%  Similarity=0.060  Sum_probs=56.3

Q ss_pred             ccceecCCCcEEEEeeCCCcEEEEeCCCCeeeE--EEcCcc-ccccccceeEEEEcCC---CCEEEEee-C---------
Q psy2305          69 KTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKA--TYRPYN-QVDEVTHAYSLAFSLD---GNKIYAGF-L---------  132 (334)
Q Consensus        69 ~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~-~~~~~~~v~~~~~~~~---~~~l~~~~-d---------  132 (334)
                      ..++|.|+|+++++-...+.|.+++..+++...  .+.... ..........|+|+|+   +..|+... .         
T Consensus        30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~  109 (454)
T 1cru_A           30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE  109 (454)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred             eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccc
Confidence            345568899877665443478888865554322  222110 0001126789999996   55555432 1         


Q ss_pred             ----CcEEEEEcCCCCCeeeeeccc---cc-ccccceEEEEEcCCCCcEEEEe
Q psy2305         133 ----SEVKIFSTDRPGRECVSRNLK---PW-FRKNIVSAIAINPVHPDICALG  177 (334)
Q Consensus       133 ----~~i~i~d~~~~~~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~~l~~~  177 (334)
                          ..|.-++.......+......   +. ........|+|.|+|. +.++.
T Consensus       110 ~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~  161 (454)
T 1cru_A          110 LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTI  161 (454)
T ss_dssp             SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEE
T ss_pred             cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEE
Confidence                245556654311111110000   11 1123478999999998 55543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.38  E-value=0.038  Score=44.73  Aligned_cols=187  Identities=9%  Similarity=0.076  Sum_probs=92.8

Q ss_pred             CCcEEEEeeC----C-----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEc
Q psy2305          76 FTSYFLCSSM----Y-----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFST  140 (334)
Q Consensus        76 ~~~~l~~~~~----d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~  140 (334)
                      ++.+++.|+.    +     ..+.+||+.+.+....-......    .-.+++.. +++.++.|+ +     ..+.+||+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~  144 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPR----NRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEP  144 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCC----BTCEEEEE-TTEEEEECCEETTEECCCEEEEET
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCc----cccEEEEE-CCEEEEEcCCCCCcccccEEEECC
Confidence            6677777765    2     46888998877654322111110    11122222 566666654 2     46888998


Q ss_pred             CCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC-----CeEEEEECCCCCce--EeeccCCCCeEEEEEccCC
Q psy2305         141 DRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-----KIIGLFSDSDGRPL--FFLKGHNGGITHLEFSSNG  213 (334)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~  213 (334)
                      .+.  .....+ .+.........+.+  ++. +++.|+.+     ..+.+||+.+.+-.  ..+......-..+.+  ++
T Consensus       145 ~~~--~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~  216 (308)
T 1zgk_A          145 ERD--EWHLVA-PMLTRRIGVGVAVL--NRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HN  216 (308)
T ss_dssp             TTT--EEEECC-CCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT
T ss_pred             CCC--eEeECC-CCCccccceEEEEE--CCE-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CC
Confidence            752  222111 11111122222333  555 77777764     45889998765321  112111111122222  67


Q ss_pred             cEEEeeecCC-----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305         214 ILLFSGARKD-----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS  279 (334)
Q Consensus       214 ~~l~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  279 (334)
                      +.++.|+ .+     ..+.+||+.+ .. -..+..........++.. -++++++.|+.+     ..+.+||+.+.
T Consensus       217 ~iyv~GG-~~~~~~~~~v~~yd~~~-~~-W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          217 CIYAAGG-YDGQDQLNSVERYDVET-ET-WTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             EEEEECC-BCSSSBCCCEEEEETTT-TE-EEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EEEEEeC-CCCCCccceEEEEeCCC-Cc-EEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            7777776 44     4688999875 22 112211111111111222 267777877754     45788888775

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.37  E-value=0.039  Score=44.45  Aligned_cols=188  Identities=8%  Similarity=0.097  Sum_probs=90.8

Q ss_pred             CCcEEEEeeCC----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-----CcEEEEEcCCCCC
Q psy2305          76 FTSYFLCSSMY----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-----SEVKIFSTDRPGR  145 (334)
Q Consensus        76 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~~  145 (334)
                      ++.+++.|+.+    ..+..||+.+.+....-......    .-.+++.. ++..++.|+ +     ..+.+||..+  .
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~--~   87 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRR----CRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVK--D   87 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTT--T
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCccc----ccceEEEE-CCEEEEEeCcCCCccccceEEECCCC--C
Confidence            44566666643    36888999887654331111110    11222222 556666654 3     4588888875  2


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecCC-----eEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEEEe
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK-----IIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~  218 (334)
                      .....+ ...........+.+  ++. +++.|+.++     .+.+||+.+.+-..  .+....... +++. -+++.++.
T Consensus        88 ~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~  161 (302)
T 2xn4_A           88 QWTSVA-NMRDRRSTLGAAVL--NGL-LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGV-VGGLLYAV  161 (302)
T ss_dssp             EEEEEC-CCSSCCBSCEEEEE--TTE-EEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEE
T ss_pred             ceeeCC-CCCccccceEEEEE--CCE-EEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEE-ECCEEEEE
Confidence            222211 11111112222222  455 777777653     58889987653221  121111111 2222 25666666


Q ss_pred             eecC------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305         219 GARK------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS  279 (334)
Q Consensus       219 ~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  279 (334)
                      |+..      -..+.+||+.+ .. -..+..........++. .-++++++.|+.+     ..+.+||+.+.
T Consensus       162 GG~~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          162 GGYDVASRQCLSTVECYNATT-NE-WTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             CCEETTTTEECCCEEEEETTT-TE-EEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             eCCCCCCCccccEEEEEeCCC-Cc-EEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCC
Confidence            6511      23578888875 22 11111110111111121 1267788887764     36889998875

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.33  E-value=0.008  Score=45.52  Aligned_cols=150  Identities=7%  Similarity=-0.136  Sum_probs=83.6

Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCC--------eEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGG--------ITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                      ..+..++|+|+|. +.++  .+|.++-.+..+.....-+. ....        -..+.|.|+|.+.++ +  ||.|+-++
T Consensus        41 ~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav-~--dG~iyr~~  113 (236)
T 1tl2_A           41 SNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV-S--KDKLYKAS  113 (236)
T ss_dssp             TTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE-E--TTEEEEES
T ss_pred             ccceeEEECCCcc-EEEE--eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe-C--CCEEEEeC
Confidence            3677999999997 6665  78888877765532211111 1112        367899999987666 6  69888776


Q ss_pred             ccCCCccce----eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecc--ccccc
Q psy2305         231 LRNPGCILH----TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSA--HQDCT  304 (334)
Q Consensus       231 ~~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i  304 (334)
                      ..+.+..-.    ...+...-..+..+.+.|+|.+.++.  |+.++-........       ..+-......+  .-...
T Consensus       114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~-------~~wl~~~~~~g~~g~~~y  184 (236)
T 1tl2_A          114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQ-------DNWLARATKIGQGGWDTF  184 (236)
T ss_dssp             CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTT-------CCHHHHCEEEESSSGGGE
T ss_pred             CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCC-------cccccccceeccCCcceE
Confidence            533222111    11111112356778899999888777  77754332222110       00000111111  12234


Q ss_pred             ceeeeccCCCcccceeeEEeeecceeee
Q psy2305         305 NGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       305 ~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      ..+.|  .|++    .+.+..  ++.++
T Consensus       185 r~l~f--~~~G----~l~~v~--~g~~Y  204 (236)
T 1tl2_A          185 KFLFF--SSVG----TLFGVQ--GGKFY  204 (236)
T ss_dssp             EEEEE--CTTS----CEEEEE--TTEEE
T ss_pred             EEEEE--CCCC----cEEEEe--CCeEE
Confidence            55778  9999    665555  77665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.18  E-value=0.045  Score=41.49  Aligned_cols=141  Identities=13%  Similarity=0.029  Sum_probs=78.1

Q ss_pred             ceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccc--------eEEEEEcCCCCcEEEEeecCCeEEE
Q psy2305         114 HAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNI--------VSAIAINPVHPDICALGTYSKIIGL  185 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~dg~i~i  185 (334)
                      .+..++|+|+|.+.++ .+|.+.-.+..+....      ...+....        ..++.|.|+|. +.++  .||.|+-
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~------~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav--~dG~iyr  111 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDND------NWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV--SKDKLYK  111 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC------CHHHHCEEEECSCGGGCSEEEECTTSC-EEEE--ETTEEEE
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCcc------cccccccEecccccccceEEEECCCCC-EEEe--CCCEEEE
Confidence            5779999999986667 8777655554321111      11111222        37899999997 6655  5699988


Q ss_pred             EECCCCCceEee-------ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc------ceeecccccCCceEE
Q psy2305         186 FSDSDGRPLFFL-------KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI------LHTFPRQVSTNQRVY  252 (334)
Q Consensus       186 ~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~  252 (334)
                      ++-.+...-.-+       .+.=..+..+.+.|+|.+.++.   |+.++-  ...+...      ...............
T Consensus       112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~lyr--~~~P~~~~~~wl~~~~~~g~~g~~~yr~  186 (236)
T 1tl2_A          112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQFYK--ALPPVSNQDNWLARATKIGQGGWDTFKF  186 (236)
T ss_dssp             ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEEEE--ECCCSSTTCCHHHHCEEEESSSGGGEEE
T ss_pred             eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcEEe--cCCCCCCCcccccccceeccCCcceEEE
Confidence            876442221111       1111467899999999755544   555433  2221111      111111111122233


Q ss_pred             EEecCCCceEEeeecCCcE
Q psy2305         253 FDLTSCSNYLLSGNTNGDL  271 (334)
Q Consensus       253 ~~~s~~~~~l~~~~~dg~i  271 (334)
                      +.|.+++.+.++.  +|.+
T Consensus       187 l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          187 LFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEECTTSCEEEEE--TTEE
T ss_pred             EEECCCCcEEEEe--CCeE
Confidence            5688888877766  6643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.17  E-value=0.097  Score=45.00  Aligned_cols=34  Identities=15%  Similarity=0.097  Sum_probs=24.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCc
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELH   35 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~   35 (334)
                      +..+.|+|.|+|+++++-...+.|++++..++..
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~   60 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV   60 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence            4567999999998766654335788887655543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.13  E-value=0.076  Score=43.06  Aligned_cols=183  Identities=9%  Similarity=0.013  Sum_probs=88.2

Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-----C-------CcEEEEEcCCCCCe
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-----L-------SEVKIFSTDRPGRE  146 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----d-------~~i~i~d~~~~~~~  146 (334)
                      +++.|+  ..+..||..+++... ........   .........++..++.|+     +       ..+..||..+  ..
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~~   78 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-ASLSSQVP---KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD--SE   78 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-EECCCCSC---SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT--TE
T ss_pred             EEEEcC--CceEEECCCCCeEec-CCCCCCCC---ccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCC--Ce
Confidence            445555  468999998887543 21111101   222233344666666554     1       1267788775  22


Q ss_pred             eeeecccccccccceEEEEEcCCCCcEEEEeecC--------CeEEEEECCCCCc--eEeeccCCCCeEEEEEccCCcEE
Q psy2305         147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS--------KIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNGILL  216 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l  216 (334)
                      ....+ ...........+.+  ++. +++.|+.+        ..+.+||..+.+-  +..+......- +++. -+++.+
T Consensus        79 W~~~~-~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iy  152 (315)
T 4asc_A           79 WLGMP-PLPSPRCLFGLGEA--LNS-IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMDLVY  152 (315)
T ss_dssp             EEECC-CBSSCEESCEEEEE--TTE-EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEE
T ss_pred             EEECC-CCCcchhceeEEEE--CCE-EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE-ECCEEE
Confidence            22111 11111111122222  455 77777743        3588999876532  11222111111 2222 456677


Q ss_pred             EeeecC-C-----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCC-----cEEEEeCCCC
Q psy2305         217 FSGARK-D-----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG-----DLSIWNVNTS  279 (334)
Q Consensus       217 ~~~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~  279 (334)
                      +.|+ . +     ..+.+||+.+ .. -..+..........++. .-++++++.|+.++     .+.+||+.+.
T Consensus       153 v~GG-~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          153 VIGG-KGSDRKCLNKMCVYDPKK-FE-WKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EECC-BCTTSCBCCCEEEEETTT-TE-EEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             EEeC-CCCCCcccceEEEEeCCC-Ce-EEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCC
Confidence            7776 4 2     4688888875 22 11111110111111111 22677888887654     5888898875

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.07  E-value=0.11  Score=43.85  Aligned_cols=237  Identities=9%  Similarity=0.088  Sum_probs=144.8

Q ss_pred             EEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC
Q psy2305           6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM   85 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~   85 (334)
                      +.-.+|..+.+|.=. ..+++|||+++.+..              +....  .+.|.-=.|-      ++  +.|+..+ 
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~kl--------------ks~~~--~e~VvfWkWi------s~--~~l~lVT-  123 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKM--------------KAHTM--TDDVTFWKWI------SL--NTVALVT-  123 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEE--------------EEEEC--SSCCCEEEEE------ET--TEEEEEC-
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhh--------------cceec--CCCceEEEec------CC--CeEEEEc-
Confidence            344677777776654 578999999987755              22222  2334333452      22  3455544 


Q ss_pred             CCcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCEEE-Ee---e----CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          86 YAPIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AG---F----LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        86 d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~----d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +..|+-|++.. ....+.+..+..... ..|.....+++.++++ +|   .    .|.+.+|..+.  +..+    .+.+
T Consensus       124 ~taVyHWsi~~~s~P~kvFdR~~~L~~-~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er--~~sQ----~ieG  196 (494)
T 1bpo_A          124 DNAVYHWSMEGESQPVKMFDRHSSLAG-CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQ----PIEG  196 (494)
T ss_dssp             SSEEEEEESSSSCCCEEEEECCGGGTT-CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT--CCEE----EECC
T ss_pred             CCeeEEecccCCCCchhheecchhccc-ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc--cccc----hhee
Confidence            45799999864 345667766554432 3788889999999887 33   1    36888999884  3333    4677


Q ss_pred             cccceEEEEEcCCC--CcEEEEeecC---CeEEEEECCCC---Cc-----eEee----ccCCCCeEEEEEccCCcEEEee
Q psy2305         157 RKNIVSAIAINPVH--PDICALGTYS---KIIGLFSDSDG---RP-----LFFL----KGHNGGITHLEFSSNGILLFSG  219 (334)
Q Consensus       157 ~~~~v~~~~~~~~~--~~~l~~~~~d---g~i~i~d~~~~---~~-----~~~~----~~~~~~i~~~~~~~~~~~l~~~  219 (334)
                      |......+....+.  ..+++.+...   ++++|.++...   ..     ...+    .....-..++..++.-..++.-
T Consensus       197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi  276 (494)
T 1bpo_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (494)
T ss_dssp             SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence            76555444433221  1244444433   78999998543   11     1111    1123345578888887788888


Q ss_pred             ecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         220 ARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       220 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      + .-|.|.+||+.+ +.++..-.-  ....+...+-+....-++.....|.|.--.++..
T Consensus       277 T-K~G~i~lyDleT-gt~i~~nrI--s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          277 T-KYGYIHLYDLET-GTCIYMNRI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             E-TTSEEEEEETTT-CCEEEEEEC--CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             e-cCceEEEEeccc-ceeeeeecc--cCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            8 899999999998 666654442  2444443344444445555567888877777665

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.05  E-value=0.099  Score=43.00  Aligned_cols=240  Identities=9%  Similarity=0.047  Sum_probs=117.9

Q ss_pred             CCceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           1 MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         1 ~d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      ++..+.|+|.|||+++++--..|.|++++..+++... +..       . ..+..........++++|.   |..++.+.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~-v~~-------~-~~v~~~g~~GllGia~~Pd---f~~~g~lY   98 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTE-LGE-------V-PGVSPSGEGGLLGIALSPD---YASDHMVY   98 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-EEE-------C-TTCCCBTTBSEEEEEECTT---HHHHCEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEee-ecc-------c-CceeecCCCCceeeEeccc---cccCCEEE
Confidence            3456899999999877665448999999866554321 000       0 0011112344566666431   01134444


Q ss_pred             EEe--eCCCcEEEEeCCCC----------eee-EEEcC-ccccccccceeEEEEcCCCCEEEEeeC--------------
Q psy2305          81 LCS--SMYAPIHLWDSVGG----------EIK-ATYRP-YNQVDEVTHAYSLAFSLDGNKIYAGFL--------------  132 (334)
Q Consensus        81 ~~~--~~d~~i~iwd~~~~----------~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~d--------------  132 (334)
                      ++-  ..++.|.-|.+..+          +.+ ..+.. ..|     .-..|+|.|||.+.++..|              
T Consensus        99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H-----~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~  173 (347)
T 3das_A           99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH-----NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLG  173 (347)
T ss_dssp             EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC-----CCCCEEECTTSCEEEECBCTTCGGGTTCTTCST
T ss_pred             EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCc-----cCccccCCCCCCEEEEECCCCCCccccCCCCCC
Confidence            432  23445655655431          111 12221 122     4468999999987775321              


Q ss_pred             CcEEEEEcCCCCCeee-----eecccccccccceEEEEEcCCCCcEEEEe-ecCCeEEEEECCCCC--------------
Q psy2305         133 SEVKIFSTDRPGRECV-----SRNLKPWFRKNIVSAIAINPVHPDICALG-TYSKIIGLFSDSDGR--------------  192 (334)
Q Consensus       133 ~~i~i~d~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--------------  192 (334)
                      |.|.-++.+  +....     ...+...+|. ....++|+|+|. +.++- +.++.=.|--+..+.              
T Consensus       174 G~IlRi~~d--G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~  249 (347)
T 3das_A          174 GKILRMTPD--GEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGS  249 (347)
T ss_dssp             TCEEEECTT--SSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCT
T ss_pred             CEEEEEeCC--CCccCCCCCCCCeEEeeCCC-CcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCc
Confidence            333333433  32100     0000123443 355899999887 55443 222222222222221              


Q ss_pred             ----ceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc---cceeecccccCCceEEEEecCCCceEEee
Q psy2305         193 ----PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC---ILHTFPRQVSTNQRVYFDLTSCSNYLLSG  265 (334)
Q Consensus       193 ----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  265 (334)
                          ++..+..+......++|. +|..+...- ..+.|....+...+.   ....+..  ....+..++..|||.++++.
T Consensus       250 ~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l-~~~~l~~v~~~~~~~~~~~e~~l~~--~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          250 GFHDPVAQWSTDEASPSGIAYA-EGSVWMAGL-RGERLWRIPLKGTAAAADPQAFLEG--EYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             TCCCCSEEECTTTCCEEEEEEE-TTEEEEEES-TTCSEEEEEEETTEESSCCEEESTT--TSSCEEEEEEEETTEEEEEE
T ss_pred             cccCCcEecCCCCCCCcceEEE-cCceeeccc-cCCEEEEEEecCCceecceEEeecC--CCCCccEEEECCCCcEEEEE
Confidence                122233222355677776 455555555 566676666664221   1111221  23457778888888766654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.0045  Score=50.68  Aligned_cols=192  Identities=10%  Similarity=0.071  Sum_probs=98.6

Q ss_pred             cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEE---cCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecc
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAF---SLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      .++++++.||.|.-+|.++|+.+..++... ..   ++....-   ..++..++.. . ||.+..++..+ +.......+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-~~---p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~   85 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN-FQ---PLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSI   85 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGG-SC---CSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCc-cC---CcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeecc
Confidence            468888999999999999999999887641 01   1111110   0123334443 3 89999999875 432221110


Q ss_pred             cccccccceEE---EEE-c----CCCCcEEEEeecCCeEEEEECCCCCceEeeccCC--CC-----eEEEEEc-----cC
Q psy2305         153 KPWFRKNIVSA---IAI-N----PVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHN--GG-----ITHLEFS-----SN  212 (334)
Q Consensus       153 ~~~~~~~~v~~---~~~-~----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~-----i~~~~~~-----~~  212 (334)
                      .-.....++..   ... .    ..+. .+++|+.+|.+.-.|+++|+.+..+....  +.     ..+....     ..
T Consensus        86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~  164 (339)
T 2be1_A           86 RQLVSTSPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQEC  164 (339)
T ss_dssp             HHHHTTCSEEEECC----------CCE-EEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------
T ss_pred             ccceeccccccCCCceeecccccccCC-EEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccC
Confidence            00011122221   001 0    0233 78899999999999999999998885321  10     0111110     12


Q ss_pred             CcEEEeeecCCCeEEEEEccCCCccceeecc-----cccCCceE-EEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         213 GILLFSGARKDCEIICWDLRNPGCILHTFPR-----QVSTNQRV-YFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       213 ~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      +..|+.+. .+..+.+.+ ++ +. ...+..     ......+. ....+.++.++ .++.||.|.-+|..++.
T Consensus       165 ~~~v~ig~-~~y~v~~~~-~s-G~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~-~~~~dg~v~A~d~~~G~  233 (339)
T 2be1_A          165 ENMIVIGK-TIFELGIHS-YD-GA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCI-APFRDKSLLASDLDFRI  233 (339)
T ss_dssp             CCEEEEEE-EEEECEECC-TT-SC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCE-EEETTTEEEEECSTTCC
T ss_pred             CCeEEEec-ceEEEEEEC-CC-CC-eEEEecccccccccccccccccccccCCcEE-EECCCCEEEEEECCCCc
Confidence            34566666 566666655 33 32 222110     00000000 00012345553 46677888888877763

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.02  E-value=0.14  Score=44.10  Aligned_cols=30  Identities=10%  Similarity=0.108  Sum_probs=23.8

Q ss_pred             CceeEEEEcCCCc-EEEEeeCCCeEEEEECC
Q psy2305           2 DIEEDVDEAPDGT-CLLTNSNDNHLRTFDLP   31 (334)
Q Consensus         2 d~V~~~~~sp~~~-~l~~~~~d~~v~iw~~~   31 (334)
                      +.-+.|+|.|||+ .|+++...|.|++++..
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            4567899999996 56666788999999754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.82  E-value=0.13  Score=42.42  Aligned_cols=21  Identities=5%  Similarity=-0.042  Sum_probs=14.7

Q ss_pred             CCcEEEEeeCC-CcEEEEeCCC
Q psy2305          76 FTSYFLCSSMY-APIHLWDSVG   96 (334)
Q Consensus        76 ~~~~l~~~~~d-~~i~iwd~~~   96 (334)
                      ++++++.|+.+ ..+.++|+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~   40 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQA   40 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTS
T ss_pred             CCEEEEEeCcCCCeEEEEcccc
Confidence            66777777643 4688899864

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.77  E-value=0.16  Score=41.16  Aligned_cols=185  Identities=9%  Similarity=0.064  Sum_probs=87.1

Q ss_pred             cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C----C-------cEEEEEcCCCCC
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L----S-------EVKIFSTDRPGR  145 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~-------~i~i~d~~~~~~  145 (334)
                      .+++.|+.  .+..||..+++... ........   .........++..++.|+ .    +       .+..||..+  .
T Consensus        17 ~i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~   88 (318)
T 2woz_A           17 LILLVNDT--AAVAYDPMENECYL-TALAEQIP---RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVS--S   88 (318)
T ss_dssp             EEEEECSS--EEEEEETTTTEEEE-EEECTTSC---SSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTT--T
T ss_pred             hhhhcccc--ceEEECCCCCceec-ccCCccCC---ccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCC--C
Confidence            34555553  38899998887644 21111011   122233345666666654 1    1       166778764  2


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecC-------CeEEEEECCCCCceE--eeccCCCCeEEEEEccCCcEE
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS-------KIIGLFSDSDGRPLF--FLKGHNGGITHLEFSSNGILL  216 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l  216 (334)
                      .....+ ...........+.+  ++. +++.|+.+       ..+.+||..+.+-..  .+......- +++. .+++.+
T Consensus        89 ~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iy  162 (318)
T 2woz_A           89 EWVGLP-PLPSARCLFGLGEV--DDK-IYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIY  162 (318)
T ss_dssp             EEEECS-CBSSCBCSCEEEEE--TTE-EEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEE
T ss_pred             cEEECC-CCCccccccceEEE--CCE-EEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEE
Confidence            222211 11111112222222  455 77777764       358889987653221  111111111 1222 466666


Q ss_pred             EeeecC-----CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-----CcEEEEeCCCC
Q psy2305         217 FSGARK-----DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-----GDLSIWNVNTS  279 (334)
Q Consensus       217 ~~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  279 (334)
                      +.|+..     -..+.+||+.+ .. -..+..........++.. -++++++.|+.+     ..+.+||+.+.
T Consensus       163 v~GG~~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          163 CLGGKTDDKKCTNRVFIYNPKK-GD-WKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             EECCEESSSCBCCCEEEEETTT-TE-EEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             EEcCCCCCCCccceEEEEcCCC-CE-EEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCC
Confidence            666521     23588899875 22 122211111111111222 256777777653     35778898875

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.75  E-value=0.17  Score=41.02  Aligned_cols=188  Identities=9%  Similarity=0.047  Sum_probs=90.1

Q ss_pred             CCCcEEEEeeC-----C------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C--------Cc
Q psy2305          75 GFTSYFLCSSM-----Y------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L--------SE  134 (334)
Q Consensus        75 ~~~~~l~~~~~-----d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d--------~~  134 (334)
                      .++++++.|+.     .      ..+..||..+++.... .......   .-.+++.. +++.++.|+ +        ..
T Consensus        44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r---~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~  118 (315)
T 4asc_A           44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM-PPLPSPR---CLFGLGEA-LNSIYVVGGREIKDGERCLDS  118 (315)
T ss_dssp             TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC-CCBSSCE---ESCEEEEE-TTEEEEECCEESSTTCCBCCC
T ss_pred             ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC-CCCCcch---hceeEEEE-CCEEEEEeCCcCCCCCcccce
Confidence            36777777773     1      1277889888765332 2111100   11122222 455555554 2        45


Q ss_pred             EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeec-C-----CeEEEEECCCCCc--eEeeccCCCCeEE
Q psy2305         135 VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTY-S-----KIIGLFSDSDGRP--LFFLKGHNGGITH  206 (334)
Q Consensus       135 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~--~~~~~~~~~~i~~  206 (334)
                      +.+||+.+.  .-...+ .+.........+.  -+++ +++.|+. +     ..+.+||..+.+-  +..+......-..
T Consensus       119 ~~~~d~~~~--~W~~~~-~~p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  192 (315)
T 4asc_A          119 VMCYDRLSF--KWGESD-PLPYVVYGHTVLS--HMDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGA  192 (315)
T ss_dssp             EEEEETTTT--EEEECC-CCSSCCBSCEEEE--ETTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred             EEEECCCCC--cEeECC-CCCCcccceeEEE--ECCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEE
Confidence            888998752  222111 1111111122222  3455 7777776 2     4689999876532  1122111111122


Q ss_pred             EEEccCCcEEEeeecCCC-----eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC-------------
Q psy2305         207 LEFSSNGILLFSGARKDC-----EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN-------------  268 (334)
Q Consensus       207 ~~~~~~~~~l~~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-------------  268 (334)
                      +.+  +++.++.|+ .++     .+.+||+.+ .. -..+..........++. .-++++++.|+.+             
T Consensus       193 ~~~--~~~iyv~GG-~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~  266 (315)
T 4asc_A          193 TVH--DGRIIVAAG-VTDTGLTSSAEVYSITD-NK-WAPFEAFPQERSSLSLV-SLVGTLYAIGGFATLETESGELVPTE  266 (315)
T ss_dssp             EEE--TTEEEEEEE-ECSSSEEEEEEEEETTT-TE-EEEECCCSSCCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEEE
T ss_pred             EEE--CCEEEEEec-cCCCCccceEEEEECCC-Ce-EEECCCCCCcccceeEE-EECCEEEEECCccccCcCCccccccc
Confidence            222  667777776 443     578888875 22 22222111111111121 2256777777753             


Q ss_pred             -CcEEEEeCCCC
Q psy2305         269 -GDLSIWNVNTS  279 (334)
Q Consensus       269 -g~i~iwd~~~~  279 (334)
                       ..+.+||+.+.
T Consensus       267 ~~~v~~yd~~~~  278 (315)
T 4asc_A          267 LNDIWRYNEEEK  278 (315)
T ss_dssp             EEEEEEEETTTT
T ss_pred             cCcEEEecCCCC
Confidence             24778888875

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.54  E-value=0.23  Score=40.02  Aligned_cols=210  Identities=10%  Similarity=-0.006  Sum_probs=111.6

Q ss_pred             EEEcCCCcEEEEeeCC--------------CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccce
Q psy2305           7 VDEAPDGTCLLTNSND--------------NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSS   72 (334)
Q Consensus         7 ~~~sp~~~~l~~~~~d--------------~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   72 (334)
                      --++++|.+|+-....              ..|+..+++..+..               .+..   ...         ..
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~---------------~l~~---~~~---------~~  110 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST---------------VLDP---DPC---------IY  110 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE---------------EEEC---SCE---------EE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce---------------Eeec---CCc---------cE
Confidence            3467888888766532              36777777766543               2211   111         12


Q ss_pred             ecCCCcEEEEee--CC--CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCe
Q psy2305          73 IDGFTSYFLCSS--MY--APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRE  146 (334)
Q Consensus        73 ~s~~~~~l~~~~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~  146 (334)
                      ++++++.|+-..  .+  ..|...++.. .....+...       .+  .+++++++.|+-.+  ...|...++.  +..
T Consensus       111 ~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~-------~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~--g~~  178 (302)
T 3s25_A          111 ASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNH-------YL--FTCNTSDRYFYYNNPKNGQLYRYDTA--SQS  178 (302)
T ss_dssp             EEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESS-------CC--CCSEEETTEEEEECTTTCCEEEEETT--TTE
T ss_pred             EEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCC-------Cc--eEeeEECCEEEEEeCCCceEEEEECC--CCC
Confidence            355788877665  33  3455556653 333334321       12  34678888888554  4677777766  443


Q ss_pred             eeeecccccccccceEEEEEcCCCCcEEEEeecC--CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec-CC
Q psy2305         147 CVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS--KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR-KD  223 (334)
Q Consensus       147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d  223 (334)
                      ...   ...   .... ..+.|++. +|+-....  ..|..-++.... ...+..  ..+  ..|+|++++|+.+.. ..
T Consensus       179 ~~~---l~~---~~~~-~~~~P~g~-~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~  245 (302)
T 3s25_A          179 EAL---FYD---CNCY-KPVVLDDT-NVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDN  245 (302)
T ss_dssp             EEE---EEC---SCEE-EEEEEETT-EEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSS
T ss_pred             EEE---EeC---CCcc-ceeeecCC-EEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCC
Confidence            332   112   1222 23568888 66655433  367777775444 344432  233  347889999887641 23


Q ss_pred             CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeC
Q psy2305         224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNV  276 (334)
Q Consensus       224 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~  276 (334)
                      +.|..-++.  +...+.+...    .+..  +++.+.+|+-.. ..+.|...++
T Consensus       246 ~~i~~~~~D--G~~r~~l~~~----~~~~--i~i~~d~Iy~td~~~~~i~~~~~  291 (302)
T 3s25_A          246 PALCVVKND--GTGFKELAKG----EFCN--INVTSQYVYFTDFVSNKEYCTST  291 (302)
T ss_dssp             CEEEEEETT--SCCCEEEEES----CEEE--EEECSSEEEEEETTTCCEEEEES
T ss_pred             cEEEEEECC--CCccEEeeCC----ccce--EEEeCCEEEEEECCCCeEEEEEC
Confidence            455555554  5444444422    1223  345666666544 2344444443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.51  E-value=0.22  Score=45.39  Aligned_cols=151  Identities=13%  Similarity=0.079  Sum_probs=79.7

Q ss_pred             CCcEEEEeeCC------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C--CcEEEEEcCCCCCe
Q psy2305          76 FTSYFLCSSMY------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L--SEVKIFSTDRPGRE  146 (334)
Q Consensus        76 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d--~~i~i~d~~~~~~~  146 (334)
                      ++++++.|+.+      ..+.+||..+.+....-.....    ..-.+++...+++.++.|+ +  +.+.+||+.+.  .
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~----R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~--~  524 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT----RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE--I  524 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC----CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT--E
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC----cccceEEEEcCCEEEEECCCCCCCCEEEEECCCC--c
Confidence            67777887754      3578899888655432111111    0223444434777777765 3  37899998852  2


Q ss_pred             eeeecc--cccccccceEEEEEcCC-CCcEEEEeec--C-----CeEEEEECCCCCc-----eEeecc---CCCCeEEEE
Q psy2305         147 CVSRNL--KPWFRKNIVSAIAINPV-HPDICALGTY--S-----KIIGLFSDSDGRP-----LFFLKG---HNGGITHLE  208 (334)
Q Consensus       147 ~~~~~~--~~~~~~~~v~~~~~~~~-~~~~l~~~~~--d-----g~i~i~d~~~~~~-----~~~~~~---~~~~i~~~~  208 (334)
                      ......  ..........++.+..+ +. +++.|+.  +     ..+.+||+.+.+-     -..+..   ....-.++.
T Consensus       525 W~~~~~~g~~p~~r~~~~a~v~~~~~~~-iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~  603 (695)
T 2zwa_A          525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQ-GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK  603 (695)
T ss_dssp             EEECCCSSGGGGSCCBSCEEEEETTTTE-EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE
T ss_pred             eEEccCCCCCCCcccceeEEEEeCCCCE-EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE
Confidence            221110  01111222234556655 55 7777775  2     4689999987761     111111   111111233


Q ss_pred             EccCCcEEEeeecC-------CCeEEEEEccC
Q psy2305         209 FSSNGILLFSGARK-------DCEIICWDLRN  233 (334)
Q Consensus       209 ~~~~~~~l~~~~~~-------d~~i~iwd~~~  233 (334)
                      ...+++.++.|+..       ...+.+||+.+
T Consensus       604 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          604 YITPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             EEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             EeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            33346777777621       24588999876

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.37  E-value=0.45  Score=41.52  Aligned_cols=248  Identities=8%  Similarity=-0.025  Sum_probs=133.8

Q ss_pred             EEEeeCCCeEEEEECCCCCceeeeeCCCC---CCCCc----ceee---------eeeeceeEEEEEEecccceecCCCcE
Q psy2305          16 LLTNSNDNHLRTFDLPSELHCKSVWRPSN---QRPKL----NYTL---------KIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus        16 l~~~~~d~~v~iw~~~~~~~~~~~~~~~~---~~~~~----~~~~---------~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      +.+|+..|.|+|+-+.+.+....+.--..   ..+..    ...+         ..||..    +.+.    .=..||++
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~----~S~t----dg~yDGry  144 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPH----ISMT----DGKYDGKY  144 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCE----EEEE----TTEEEEEE
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCc----cccc----CCeeeeEE
Confidence            67888999999999999887654432111   11111    0111         111111    1110    00137788


Q ss_pred             EEEeeC-CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEc--CCCCEEEEeeCCcEEE------EEcCCCCCeeeee
Q psy2305          80 FLCSSM-YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFS--LDGNKIYAGFLSEVKI------FSTDRPGRECVSR  150 (334)
Q Consensus        80 l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~d~~i~i------~d~~~~~~~~~~~  150 (334)
                      |+.-.. ...|...++...++.+.++..+..    .+..++|-  |+..++++++.-.+=+      ..++.+.+ . ..
T Consensus       145 lfiNdkan~RvAri~l~~~~~d~Ii~iPn~~----~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~-y-~~  218 (638)
T 3sbq_A          145 LFINDKANSRVARIRLDIMKCDKMITVPNVQ----AIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENS-Y-TM  218 (638)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTCS----CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTE-E-EE
T ss_pred             EEEecCCCcceEEEECCcEeeceeEeCCCCc----CcccccccccCCccEEEecceeeccCCCCCcccccCChhh-c-eE
Confidence            887663 557888888888887776654432    67888886  6777887654222211      11111111 0 00


Q ss_pred             ccccccc----------ccceEEEEEcCCCCcEEEEeecCC---------------eEEEEECC-------CCC------
Q psy2305         151 NLKPWFR----------KNIVSAIAINPVHPDICALGTYSK---------------IIGLFSDS-------DGR------  192 (334)
Q Consensus       151 ~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~i~d~~-------~~~------  192 (334)
                      .......          ......+...+++. +.++.+.+.               .+.++++.       .++      
T Consensus       219 f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~-~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          219 YNAIDAETMEMAFQVIVDGNLDNTDADYTGR-FAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEEETTTCSEEEEEEESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEEcCCccEEEEEEEcCCChhhcCCCCCCC-EEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence            0000010          11222344566676 555444332               35555541       110      


Q ss_pred             -ceEeecc---------------CCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc--------cceeec-ccccC
Q psy2305         193 -PLFFLKG---------------HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC--------ILHTFP-RQVST  247 (334)
Q Consensus       193 -~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~--------~~~~~~-~~~~~  247 (334)
                       -+..+.+               -......+..+|||+++++++-.+.++.++|++....        +...+. .-..+
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G  377 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG  377 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence             1112211               1123456889999999988876789999999984111        111111 11124


Q ss_pred             CceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         248 NQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       248 ~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      ...+..+|.++|.-..+--.|..|.-|++..
T Consensus       378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             SCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             CcccEEEECCCCceEeeeeecceEEEEeccH
Confidence            4567789999996666666899999999875

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.36  E-value=0.58  Score=42.66  Aligned_cols=199  Identities=11%  Similarity=0.026  Sum_probs=100.8

Q ss_pred             CCCcEEEEeeCC----CcEEEEeCCCCeeeEEE-cCc-cccccccceeEEEEcC-CCCEEEEee-C------CcEEEEEc
Q psy2305          75 GFTSYFLCSSMY----APIHLWDSVGGEIKATY-RPY-NQVDEVTHAYSLAFSL-DGNKIYAGF-L------SEVKIFST  140 (334)
Q Consensus        75 ~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~-~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~-d------~~i~i~d~  140 (334)
                      .++.+++.|+.+    ..+.+||..+++....- ... ........-.+++..+ +++.++.|+ +      +.+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            367777787753    46888998877654433 200 0000000123444443 667666664 2      35788888


Q ss_pred             CCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCC--eEEEEECCCCCceEe-----eccCCCCeEEEEEccC-
Q psy2305         141 DRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK--IIGLFSDSDGRPLFF-----LKGHNGGITHLEFSSN-  212 (334)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~-----~~~~~~~i~~~~~~~~-  212 (334)
                      .+.  ...... ....... -.+++...++. +++.|+.++  .+.+||..+.+-...     +.........+.+..+ 
T Consensus       476 ~t~--~W~~~~-~~p~~R~-~h~~~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          476 KTR--EWSMIK-SLSHTRF-RHSACSLPDGN-VLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             TTT--EEEECC-CCSBCCB-SCEEEECTTSC-EEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             CCC--cEEECC-CCCCCcc-cceEEEEcCCE-EEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence            752  222111 1111111 12333334677 888887655  699999877532111     1111122233555555 


Q ss_pred             CcEEEeeecC--C-----CeEEEEEccCCCc----cceeeccc-ccCCceEEEEecCCCceEEeeecC--------CcEE
Q psy2305         213 GILLFSGARK--D-----CEIICWDLRNPGC----ILHTFPRQ-VSTNQRVYFDLTSCSNYLLSGNTN--------GDLS  272 (334)
Q Consensus       213 ~~~l~~~~~~--d-----~~i~iwd~~~~~~----~~~~~~~~-~~~~~~~~~~~s~~~~~l~~~~~d--------g~i~  272 (334)
                      ++.++.|+ .  +     ..+.+||+.+..-    ....+... .....-.++....++++++.|+.+        ..+.
T Consensus       551 ~~iyv~GG-~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          551 KQGIILGG-GFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TEEEEECC-BCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CEEEEECC-cCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence            66777776 3  2     4588999886320    01111110 011111122223337777877743        4689


Q ss_pred             EEeCCCC
Q psy2305         273 IWNVNTS  279 (334)
Q Consensus       273 iwd~~~~  279 (334)
                      +||+.+.
T Consensus       630 ~yd~~t~  636 (695)
T 2zwa_A          630 SLDPLSE  636 (695)
T ss_dssp             EEETTTT
T ss_pred             EEECCCC
Confidence            9999876

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.33  E-value=0.32  Score=39.35  Aligned_cols=189  Identities=9%  Similarity=0.053  Sum_probs=88.1

Q ss_pred             CCCcEEEEeeC----CC-------cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-------CcE
Q psy2305          75 GFTSYFLCSSM----YA-------PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-------SEV  135 (334)
Q Consensus        75 ~~~~~l~~~~~----d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-------~~i  135 (334)
                      .++.+++.|+.    ++       .+..||..+++....-......    .-.+++.. +++.++.|+ +       ..+
T Consensus        55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR----CLFGLGEV-DDKIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB----CSCEEEEE-TTEEEEEEEEBTTTCCEEEEE
T ss_pred             ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc----cccceEEE-CCEEEEEcCccCCCCcccceE
Confidence            46777788773    11       1778898877654321111110    11222222 556656554 3       357


Q ss_pred             EEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC------CeEEEEECCCCCceE--eeccCCCCeEEE
Q psy2305         136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS------KIIGLFSDSDGRPLF--FLKGHNGGITHL  207 (334)
Q Consensus       136 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~i~~~  207 (334)
                      .+||+.+  ..-.... ......... +++. .++. +++.|+.+      ..+.+||+.+.+-..  .+....... ++
T Consensus       130 ~~yd~~~--~~W~~~~-~~p~~r~~~-~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~  202 (318)
T 2woz_A          130 LCYDPVA--AKWSEVK-NLPIKVYGH-NVIS-HNGM-IYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMF-GV  202 (318)
T ss_dssp             EEEETTT--TEEEEEC-CCSSCEESC-EEEE-ETTE-EEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EE
T ss_pred             EEEeCCC--CCEeECC-CCCCccccc-EEEE-ECCE-EEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccc-eE
Confidence            7888875  2222111 111111111 2222 3555 77777642      358999987753221  121111111 22


Q ss_pred             EEccCCcEEEeeecCC----CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecC--------------C
Q psy2305         208 EFSSNGILLFSGARKD----CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTN--------------G  269 (334)
Q Consensus       208 ~~~~~~~~l~~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d--------------g  269 (334)
                      +. -+++.++.|+..+    ..+.+||+.+ .. -..+..........++. .-++++++.|+.+              .
T Consensus       203 ~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~-~~-W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~  278 (318)
T 2woz_A          203 AI-HKGKIVIAGGVTEDGLSASVEAFDLKT-NK-WEVMTEFPQERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPTEVN  278 (318)
T ss_dssp             EE-ETTEEEEEEEEETTEEEEEEEEEETTT-CC-EEECCCCSSCCBSCEEE-EETTEEEEECCBCCBC----CCBCCBCC
T ss_pred             EE-ECCEEEEEcCcCCCCccceEEEEECCC-Ce-EEECCCCCCcccceEEE-EECCEEEEECCeeccCCCCceeccceee
Confidence            22 2567777766212    3467888875 22 11221110111111121 2356777777653              3


Q ss_pred             cEEEEeCCCC
Q psy2305         270 DLSIWNVNTS  279 (334)
Q Consensus       270 ~i~iwd~~~~  279 (334)
                      .+.+||+.+.
T Consensus       279 ~v~~yd~~~~  288 (318)
T 2woz_A          279 DIWKYEDDKK  288 (318)
T ss_dssp             CEEEEETTTT
T ss_pred             eEEEEeCCCC
Confidence            5778888775

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.21  E-value=0.41  Score=39.41  Aligned_cols=138  Identities=7%  Similarity=-0.081  Sum_probs=60.5

Q ss_pred             CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-------CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-------LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ..+.+||+.+.+....-.......   .-.+++.. ++++++.|+       ...+..||++.....-.... .+.....
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~---~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~-~~~~~~~  242 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGT---AGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA-PVSSPDG  242 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCC---BSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECC-CSSTTTC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCc---ccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecC-CCCCCcc
Confidence            468899998876543322111100   10233333 455555543       23577787732122222211 1111111


Q ss_pred             ceEEEEEcCCCCcEEEEeecC----------------------CeEEEEECCCCC--ceEeeccCCCCeEEEEEccCCcE
Q psy2305         160 IVSAIAINPVHPDICALGTYS----------------------KIIGLFSDSDGR--PLFFLKGHNGGITHLEFSSNGIL  215 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~  215 (334)
                      .....+...++. +++.|+.+                      ..+.+||+.+.+  .+..+......-.+  ..-+++.
T Consensus       243 ~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i  319 (357)
T 2uvk_A          243 VAGGFAGISNDS-LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSL  319 (357)
T ss_dssp             CBSCEEEEETTE-EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEE
T ss_pred             cccceEEEECCE-EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEE
Confidence            111112223455 77777743                      257889987653  23333222222122  2346777


Q ss_pred             EEeeecCCC------eEEEEEccC
Q psy2305         216 LFSGARKDC------EIICWDLRN  233 (334)
Q Consensus       216 l~~~~~~d~------~i~iwd~~~  233 (334)
                      ++.|+ .++      .+.+++++.
T Consensus       320 ~v~GG-~~~~~~~~~~v~~l~~~~  342 (357)
T 2uvk_A          320 LIIGG-ETAGGKAVTDSVLITVKD  342 (357)
T ss_dssp             EEEEE-ECGGGCEEEEEEEEEC-C
T ss_pred             EEEee-eCCCCCEeeeEEEEEEcC
Confidence            77777 442      355567765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.16  E-value=0.75  Score=45.03  Aligned_cols=234  Identities=10%  Similarity=0.106  Sum_probs=128.2

Q ss_pred             EcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCc
Q psy2305           9 EAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAP   88 (334)
Q Consensus         9 ~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~   88 (334)
                      .+|..+.+|.=. ..+++|||+++....              +....  ...|.-=.|-      ++  +.|+..+ +..
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~kl--------------ks~~~--~e~VvfWkWi------s~--~~l~lVT-~~a  126 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKM--------------KAHTM--TDDVTFWKWI------SL--NTVALVT-DNA  126 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhh--------------ccccc--CCCceEEEec------CC--CeeEEEc-CCe
Confidence            466666665543 567888888876654              12221  2334333452      33  3444443 457


Q ss_pred             EEEEeCCCC-eeeEEEcCccccccccceeEEEEcCCCCEEE-Ee------e-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          89 IHLWDSVGG-EIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AG------F-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        89 i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~------~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      |.-|++... ...+.+..+.... ...|.....+++.++++ +|      . .|.+.+|.++.  +..+    .+.+|..
T Consensus       127 VyHW~~~~~s~P~k~fdR~~~L~-~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er--~~sQ----~iegha~  199 (1630)
T 1xi4_A          127 VYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQ----PIEGHAA  199 (1630)
T ss_pred             EEEeccCCCCccHHHHhcchhcc-cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc--ccch----hhhHhHh
Confidence            999999642 3344444433222 12788888899999887 33      1 47899999874  2222    4566755


Q ss_pred             ceEEEEEc--CCCCcEEEEeec---CCeEEEEECCCC---CceE------eecc---CCCCeEEEEEccCCcEEEeeecC
Q psy2305         160 IVSAIAIN--PVHPDICALGTY---SKIIGLFSDSDG---RPLF------FLKG---HNGGITHLEFSSNGILLFSGARK  222 (334)
Q Consensus       160 ~v~~~~~~--~~~~~~l~~~~~---dg~i~i~d~~~~---~~~~------~~~~---~~~~i~~~~~~~~~~~l~~~~~~  222 (334)
                      ....+...  +....+++.+..   .+.++|.++...   .+..      .+..   ...-..++..++.-..++..+ .
T Consensus       200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it-k  278 (1630)
T 1xi4_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-K  278 (1630)
T ss_pred             hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe-c
Confidence            44444332  222214443322   378999998442   1111      1111   122234667777666788888 8


Q ss_pred             CCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         223 DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       223 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      -|.|.+||+.+ +.++..-.  .....+...+-+....-++.....|.|.--.+...
T Consensus       279 ~G~~~~~d~~t-~~~i~~~r--is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          279 YGYIHLYDLET-GTCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             CceEEEEeccc-chhhhhcc--ccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence            99999999998 66554333  22333333332333333444446676666666554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.58  E-value=0.14  Score=44.63  Aligned_cols=105  Identities=12%  Similarity=-0.025  Sum_probs=66.5

Q ss_pred             ceeEEEEcCCCCEEEEee--CCcEEEEEcCCC-----CCeeeeecc--cccccccceEEEEEcCCCCcEEEEeecCCeEE
Q psy2305         114 HAYSLAFSLDGNKIYAGF--LSEVKIFSTDRP-----GRECVSRNL--KPWFRKNIVSAIAINPVHPDICALGTYSKIIG  184 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~-----~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  184 (334)
                      ....+..+|||+++++++  +.++.++|++.-     ++.+.....  ....-.-.....+|.++|. ...+-..|..|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~-aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN-AYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE-EEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc-eEeeeeecceEE
Confidence            567899999999999776  899999998841     111000000  0111223456789999996 677777899999


Q ss_pred             EEECCCC----------CceEeeccCCCCeEEEEE------ccCCcEEEeee
Q psy2305         185 LFSDSDG----------RPLFFLKGHNGGITHLEF------SSNGILLFSGA  220 (334)
Q Consensus       185 i~d~~~~----------~~~~~~~~~~~~i~~~~~------~~~~~~l~~~~  220 (334)
                      .|++...          ..+..+.-|-.+- .+.-      .|+|++|++..
T Consensus       403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred             EEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence            9998542          3444554443322 2222      56788887764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.49  E-value=1.5  Score=40.36  Aligned_cols=247  Identities=11%  Similarity=0.070  Sum_probs=126.3

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCce--eeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHC--KSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      .|.++.-..+|.+.+ |+.+| +..++..++...  ..+... ...    .   ......|.++.-       +.++++.
T Consensus       325 ~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~-~~~----~---~l~~~~v~~i~~-------d~~g~lW  387 (758)
T 3ott_A          325 QFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMG-DKT----Y---PLSHNRIRHIYE-------DKEQQLW  387 (758)
T ss_dssp             BEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTT-CSS----S---CCSCSCEEEEEE-------CTTSCEE
T ss_pred             eEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccC-CcC----C---CCCCCceEEEEE-------CCCCCEE
Confidence            477787777776544 44555 556665543211  000000 000    0   001234655543       5567654


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEc-CccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCC----CCCeee---eecc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYR-PYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDR----PGRECV---SRNL  152 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~----~~~~~~---~~~~  152 (334)
                      + |+. +-+..+|..+++...... ..........|.++...++|.+.+....+-+..+|..+    ......   ... 
T Consensus       388 i-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-  464 (758)
T 3ott_A          388 I-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYS-  464 (758)
T ss_dssp             E-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEEC-
T ss_pred             E-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccc-
Confidence            4 443 458899988876543221 11000011257888888887765544466688888652    011111   000 


Q ss_pred             cccc-cccceEEEEEcCCCCcEEE-EeecCCeEEEEECCCCCceEeecc---CCCCeEEEEEccCCcEEEeeecCCCeEE
Q psy2305         153 KPWF-RKNIVSAIAINPVHPDICA-LGTYSKIIGLFSDSDGRPLFFLKG---HNGGITHLEFSSNGILLFSGARKDCEII  227 (334)
Q Consensus       153 ~~~~-~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~d~~i~  227 (334)
                      ...+ ....|.++...++|. +-+ .++. +-|..+|.++++.......   ....+.++....+|.+.+ ++ ..| +.
T Consensus       465 ~~~~l~~~~i~~i~~d~~g~-lWi~~~t~-~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt-~~G-l~  539 (758)
T 3ott_A          465 VHNGLSGMFINQIIPDNEGN-VWVLLYNN-KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GF-HGG-VM  539 (758)
T ss_dssp             GGGTCSCSCEEEEEECTTSC-EEEEETTC-SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EE-TTE-EE
T ss_pred             cccccccceeeeEEEcCCCC-EEEEccCC-CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-Ee-cCc-eE
Confidence            0111 123588999999887 444 2444 5588899876644332111   124577888888886554 55 444 77


Q ss_pred             EEEccCCCccceeec-ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         228 CWDLRNPGCILHTFP-RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       228 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .+|..+ .. ...+. .......+.++... +|.+.+ ++.+| |..+|..+.
T Consensus       540 ~~~~~~-~~-~~~~~~~gl~~~~i~~i~~~-~g~lWi-~t~~G-l~~~~~~~~  587 (758)
T 3ott_A          540 RINPKD-ES-QQSISFGSFSNNEILSMTCV-KNSIWV-STTNG-LWIIDRKTM  587 (758)
T ss_dssp             EECC---CC-CCBCCCCC---CCEEEEEEE-TTEEEE-EESSC-EEEEETTTC
T ss_pred             EEecCC-Cc-eEEecccCCCccceEEEEEC-CCCEEE-ECCCC-eEEEcCCCc
Confidence            888764 22 22221 11113346666543 565444 44555 778888775

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.31  E-value=0.96  Score=36.98  Aligned_cols=155  Identities=12%  Similarity=0.051  Sum_probs=79.3

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe-eCCCcEEEE
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS-SMYAPIHLW   92 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~-~~d~~i~iw   92 (334)
                      ..++.++.||.|.-+|..+++..-.+...              ...++..... |.   ...++..++.. ..||.|..+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--------------~~~p~~~~~~-~~---~~~~~~~~vv~p~~dG~l~a~   72 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--------------NFQPLIEIQE-PS---RLETYETLIIEPFGDGNIYYF   72 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG--------------GSCCSEECCC-SC---TTTSSEEEEECCSTTTEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC--------------ccCCcEEecC-Cc---cccCCcEEEEEECCCCEEEEE
Confidence            47888999999999999999876322211              0011111000 00   01133444443 589999999


Q ss_pred             eCCCCeeeEEEcCccccccccceeE---EEE-----cCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc----
Q psy2305          93 DSVGGEIKATYRPYNQVDEVTHAYS---LAF-----SLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN----  159 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~v~~---~~~-----~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~----  159 (334)
                      +..+|.....+....... ..++..   ...     ...+..+++|+ ++.+...|+.+ |+.+.....  .....    
T Consensus        73 ~~~~G~~~~~~~~~~lv~-~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t-G~~~W~~~~--~~~~~~~~~  148 (339)
T 2be1_A           73 NAHQGLQKLPLSIRQLVS-TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN-GEIISAFGP--GSKNGYFGS  148 (339)
T ss_dssp             ETTTEEEEEEEEHHHHHT-TCSEEEECC----------CCEEEEECEEEEEEEEEETTT-CCEEEEEST--TCBCC----
T ss_pred             ECCCCcEEeeecccccee-ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCC-CcEEEEEec--CCCcccccc
Confidence            998886655444321110 001111   000     00344566676 99999999998 776664321  11001    


Q ss_pred             -ceEEEEEc-----CCCCcEEEEeecCCeEEEEECCCCC
Q psy2305         160 -IVSAIAIN-----PVHPDICALGTYSKIIGLFSDSDGR  192 (334)
Q Consensus       160 -~v~~~~~~-----~~~~~~l~~~~~dg~i~i~d~~~~~  192 (334)
                       ...|....     ..+. .++.+..+..+.+.+ ++++
T Consensus       149 ~~e~~~~~~d~~~d~~~~-~v~ig~~~y~v~~~~-~sG~  185 (339)
T 2be1_A          149 QSVDCSPEEKIKLQECEN-MIVIGKTIFELGIHS-YDGA  185 (339)
T ss_dssp             ----------------CC-EEEEEEEEEECEECC-TTSC
T ss_pred             cccccccccccccccCCC-eEEEecceEEEEEEC-CCCC
Confidence             01111111     1133 677777777777777 4553

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.05  E-value=2.1  Score=39.42  Aligned_cols=239  Identities=15%  Similarity=0.102  Sum_probs=125.7

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      .|.++....+|.+.+ |+..| |..++..+.+... +..+..         .......|.++..       .+++..|..
T Consensus       147 ~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~-~~~~~~---------~~~~~~~i~~i~~-------d~~~~~lWi  207 (758)
T 3ott_A          147 TIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEG-IPLPVH---------SSQSNLFVNSLLE-------DTTRQCVWI  207 (758)
T ss_dssp             CEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEE-ECCCCC---------TTCSSCCEEEEEE-------ETTTTEEEE
T ss_pred             eEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEE-ecCCCc---------cccccceeEEEEE-------ECCCCEEEE
Confidence            467777777777554 44444 7778876654321 000000         0001123555544       445554445


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccc----ccccc
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLK----PWFRK  158 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~  158 (334)
                      |+. +-+..+|..+++..........     .|.++...++|.+.+.. ++-+.+++..+ + ........    ..-..
T Consensus       208 gt~-~Gl~~~~~~~~~~~~~~~l~~~-----~i~~i~~d~~g~lWigT-~~Gl~~~~~~~-~-~~~~~~~~~~~~~~l~~  278 (758)
T 3ott_A          208 GTE-GYLFQYFPSTGQIKQTEAFHNN-----SIKSLALDGNGDLLAGT-DNGLYVYHNDT-T-PLQHIIHDSRNIQSLTN  278 (758)
T ss_dssp             EEE-EEEEEEETTTTEEEEEEEEEEE-----EEEEEEECTTCCEEEEE-TTEEEEECCTT-S-CCEEECCCTTCTTSCSC
T ss_pred             EEC-CCCeEEcCCCCeEEeccCCCCC-----eEEEEEEcCCCCEEEEe-CCceeEEecCC-C-cEEEEEcCCCCcCcCCc
Confidence            553 3488889877654322111111     68888888888766654 45577888764 2 22211000    01123


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-------cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-------GHNGGITHLEFSSNGILLFSGARKDCEIICWDL  231 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~  231 (334)
                      ..|.++....+|.  |..|+..| +.++... . ....+.       .....|.++.-.++|.+. .|+ .+| +..++.
T Consensus       279 ~~i~~i~~D~~g~--lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt-~~G-l~~~~~  350 (758)
T 3ott_A          279 NIIWNIFADQEHN--IWLGTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGG-ANG-LIRFTD  350 (758)
T ss_dssp             SCEEEEEECTTCC--EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEE-TTE-EEEESC
T ss_pred             CeEEEEEEcCCCC--EEEEeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcCCCCEE-Eee-CCc-ceeecc
Confidence            4688998888886  55566666 5554432 2 111111       123468888888777654 455 455 555554


Q ss_pred             cCCC-ccceeecc-----cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         232 RNPG-CILHTFPR-----QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       232 ~~~~-~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .+.. .....+..     ......+.++.-..+|++.+ |+ ++-|..||..++
T Consensus       351 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~  402 (758)
T 3ott_A          351 PAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATR  402 (758)
T ss_dssp             TTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTT
T ss_pred             cccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCC
Confidence            4311 11111211     11234577777677776554 44 456899998775

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.69  E-value=3.1  Score=35.77  Aligned_cols=56  Identities=16%  Similarity=0.071  Sum_probs=32.3

Q ss_pred             cccceecCCCc-EEEEeeCCCcEEEEeCCCCe---eeEEEcCcccc----ccccceeEEEEcCC
Q psy2305          68 PKTSSIDGFTS-YFLCSSMYAPIHLWDSVGGE---IKATYRPYNQV----DEVTHAYSLAFSLD  123 (334)
Q Consensus        68 ~~~~~~s~~~~-~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~----~~~~~v~~~~~~~~  123 (334)
                      |..|+|.|++. .|+++.+.|.|++++.....   .+..+......    ........|+|+|+
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            44567788986 45556778999999753221   12222211000    00126789999997

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=91.31  E-value=5.6  Score=33.06  Aligned_cols=175  Identities=11%  Similarity=0.052  Sum_probs=97.2

Q ss_pred             cEEEEeCCCC--eeeEEEcCccc-cccccceeEEEEc---CC----CCEEEEee--CCcEEEEEcCCCCCeeeeeccc--
Q psy2305          88 PIHLWDSVGG--EIKATYRPYNQ-VDEVTHAYSLAFS---LD----GNKIYAGF--LSEVKIFSTDRPGRECVSRNLK--  153 (334)
Q Consensus        88 ~i~iwd~~~~--~~~~~~~~~~~-~~~~~~v~~~~~~---~~----~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~--  153 (334)
                      .|.+||+.++  +.++.+..... ....+.+..+++.   |+    +.+++.+.  ...|.++|+.+ ++..+...-.  
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~-~~swRv~~~~~~  202 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKK-QDSWNVTHPTFK  202 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTT-TEEEEEECGGGS
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCC-CcEEEEccCCCc
Confidence            5889999999  88888766422 1222367888887   22    34444443  68899999986 4333221000  


Q ss_pred             --------cccc----ccceEEEEEcCC----CCcEEEEeecCC-eEEEEE---CCCC---CceEeec--cCCCCeEEEE
Q psy2305         154 --------PWFR----KNIVSAIAINPV----HPDICALGTYSK-IIGLFS---DSDG---RPLFFLK--GHNGGITHLE  208 (334)
Q Consensus       154 --------~~~~----~~~v~~~~~~~~----~~~~l~~~~~dg-~i~i~d---~~~~---~~~~~~~--~~~~~i~~~~  208 (334)
                              ..+.    ...+..++++|+    ++ .|......+ .++-..   +++.   ..++.+-  +....-..++
T Consensus       203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~-~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~  281 (381)
T 3q6k_A          203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNR-PAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA  281 (381)
T ss_dssp             CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCC-EEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred             cccCcceEECCEEeEeccCceEEEecCCcCCCCe-EEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence                    0111    246888999998    66 555554433 344333   1222   2222221  1113344567


Q ss_pred             Ec-cCCcEEEeeecCCCeEEEEEccC-CC--ccceeecccccCCceEEEEecCCCceEEee
Q psy2305         209 FS-SNGILLFSGARKDCEIICWDLRN-PG--CILHTFPRQVSTNQRVYFDLTSCSNYLLSG  265 (334)
Q Consensus       209 ~~-~~~~~l~~~~~~d~~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  265 (334)
                      +. .+|..+++-- ....|..|+... +-  .....+.....-.....+.+.++|.+.+..
T Consensus       282 ~D~~~G~ly~~~~-~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          282 YDPKTKVIFFAEA-NTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             ECTTTCEEEEEES-SSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             EeCCCCeEEEEec-cCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            75 5777666666 789999999874 21  122333322233455566666666554444

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.22  E-value=7.7  Score=36.83  Aligned_cols=32  Identities=9%  Similarity=-0.034  Sum_probs=27.6

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcC
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRP  105 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  105 (334)
                      .++..++++-+.|+++++|++.+++++.+...
T Consensus       244 ~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          244 LSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             ETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             cCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            56778999999999999999999998877543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.52  E-value=5.5  Score=31.55  Aligned_cols=168  Identities=11%  Similarity=0.026  Sum_probs=87.2

Q ss_pred             CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccceEEEE
Q psy2305          86 YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIA  165 (334)
Q Consensus        86 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~  165 (334)
                      ||.|..|-......+-. ..  ..  ...|..++..... .++.. +|.|..|-....++.-..     ......|..++
T Consensus        80 ~G~v~~wG~n~~Gqlg~-P~--~~--~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~~-----~~~~~~i~~i~  147 (282)
T 3qhy_B           80 DGEVIAWGGNEDGQTTV-PA--EA--RSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTVP-----AEAQSGVTALD  147 (282)
T ss_dssp             TTEEEEEECCTTSTTCC-CG--GG--SSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSCC-----GGGGSSEEEEE
T ss_pred             CCEEEEeeCCCCCCCCC-Cc--cc--CCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCCC-----ccCCCCeEEEE
Confidence            88888886443211110 00  00  1156677665543 34444 899999987754443221     12234577776


Q ss_pred             EcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc
Q psy2305         166 INPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV  245 (334)
Q Consensus       166 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~  245 (334)
                      .....  .++ -. ||.|+.|-......+..-..-...|..++...+. .++. .  ||.++.|-....++.-....   
T Consensus       148 ~G~~~--~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al-~--~G~v~~wG~n~~gqlg~p~~---  216 (282)
T 3qhy_B          148 GGVYT--ALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL-K--DGKVIAWGDNRYKQTTVPTE---  216 (282)
T ss_dssp             ECSSE--EEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE-E--TTEEEEEECCTTSTTCCCGG---
T ss_pred             cccCE--EEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE-E--CCeEEEEECCCCCCCCCCcc---
Confidence            65443  233 23 7999999865432221111123467777665433 3333 4  89999998776444321111   


Q ss_pred             cCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       246 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ....+..++..... .++. . ||.|+.|=....
T Consensus       217 ~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~~  247 (282)
T 3qhy_B          217 ALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSRT  247 (282)
T ss_dssp             GGSSCCEEEECSSC-EEEE-E-TTEEEEESTTCC
T ss_pred             cCCCceEEEcCCCE-EEEE-E-CCEEEEecCCCC
Confidence            12234455433332 2333 3 899999966553

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=87.28  E-value=12  Score=31.16  Aligned_cols=156  Identities=12%  Similarity=0.008  Sum_probs=72.9

Q ss_pred             ceeEEEEcCC-CCEEEEe-eCCcEEEEEcCCCCCeeeeecccccc---------cccceEEEEEcCCCCcEEEEeecCCe
Q psy2305         114 HAYSLAFSLD-GNKIYAG-FLSEVKIFSTDRPGRECVSRNLKPWF---------RKNIVSAIAINPVHPDICALGTYSKI  182 (334)
Q Consensus       114 ~v~~~~~~~~-~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~  182 (334)
                      .+.+|.+.|. ...|+.+ .++.|..  ....++...........         ....+.++.++|.....+..+... .
T Consensus       178 ~i~~i~~d~~~~~~l~vg~~~ggl~~--s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-g  254 (394)
T 3b7f_A          178 KMHSILVDPRDPKHLYIGMSSGGVFE--STDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-G  254 (394)
T ss_dssp             EEEEEEECTTCTTCEEEEEETBEEEE--ESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-E
T ss_pred             ceeEEEECCCCCCEEEEEECCCCEEE--ECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-e
Confidence            5789999984 3444444 3544433  33224333321100000         013588999999743266666544 4


Q ss_pred             EEEEECCCCCceEeecc--CC---CCeEEEEEccC-CcEEEeeec----------CCCeEEEEEccCCCccceeeccccc
Q psy2305         183 IGLFSDSDGRPLFFLKG--HN---GGITHLEFSSN-GILLFSGAR----------KDCEIICWDLRNPGCILHTFPRQVS  246 (334)
Q Consensus       183 i~i~d~~~~~~~~~~~~--~~---~~i~~~~~~~~-~~~l~~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~  246 (334)
                      |...+ ..++.-..+..  ..   ..+..+.++|. ...|+++..          .++...+|.....++.-..+.....
T Consensus       255 l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp  333 (394)
T 3b7f_A          255 IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP  333 (394)
T ss_dssp             EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred             EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence            55444 22332222221  11   23567888763 334444430          1334566766553443333321111


Q ss_pred             C------CceEEEEecCC-CceEEeeecCCcEEE
Q psy2305         247 T------NQRVYFDLTSC-SNYLLSGNTNGDLSI  273 (334)
Q Consensus       247 ~------~~~~~~~~s~~-~~~l~~~~~dg~i~i  273 (334)
                      .      .....++++|. ...|+.++.++.|..
T Consensus       334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~  367 (394)
T 3b7f_A          334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA  367 (394)
T ss_dssp             CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred             CccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            1      01124667774 345666665555543

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=85.59  E-value=14  Score=30.62  Aligned_cols=162  Identities=9%  Similarity=0.119  Sum_probs=93.0

Q ss_pred             ceeEEEEcCCCCEEE--Eee-C-------------CcEEEEEcCCCC--Ceeeeecc--cccccccceEEEEEc---CC-
Q psy2305         114 HAYSLAFSLDGNKIY--AGF-L-------------SEVKIFSTDRPG--RECVSRNL--KPWFRKNIVSAIAIN---PV-  169 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~--~~~-d-------------~~i~i~d~~~~~--~~~~~~~~--~~~~~~~~v~~~~~~---~~-  169 (334)
                      .|..+...+.+++-+  +|. +             -.|.+||+.+ +  +.++...+  ........+..+++.   |. 
T Consensus        88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t-~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~  166 (381)
T 3q6k_A           88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQ-PNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG  166 (381)
T ss_dssp             CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSS-TTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred             EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCC-CCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence            567777777666554  231 1             1467888887 4  55554322  112234567888887   32 


Q ss_pred             --CCcEEEEe-ecCCeEEEEECCCCCceEeec--------------cC----CCCeEEEEEccC----CcEEEeeecCCC
Q psy2305         170 --HPDICALG-TYSKIIGLFSDSDGRPLFFLK--------------GH----NGGITHLEFSSN----GILLFSGARKDC  224 (334)
Q Consensus       170 --~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~--------------~~----~~~i~~~~~~~~----~~~l~~~~~~d~  224 (334)
                        +..++... ...+.|.+||+.+++.-+.+.              +.    ...+..|+++|+    ++.|+... ..+
T Consensus       167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p-lss  245 (381)
T 3q6k_A          167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLA-GSA  245 (381)
T ss_dssp             TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEE-SSC
T ss_pred             CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEE-CCC
Confidence              12244433 346789999998876544431              10    236888999998    78888776 443


Q ss_pred             eEEEEEccC-----C--CccceeecccccCCceEEEEec-CCCceEEeeecCCcEEEEeCCC
Q psy2305         225 EIICWDLRN-----P--GCILHTFPRQVSTNQRVYFDLT-SCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       225 ~i~iwd~~~-----~--~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                       -++|.+.+     .  ...++.+...........+++. .+|.++++--....|..|+..+
T Consensus       246 -~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          246 -IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             -SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             -CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence             34444432     1  1112222111111334455665 6787777777788999999876

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.40  E-value=21  Score=33.92  Aligned_cols=36  Identities=22%  Similarity=0.170  Sum_probs=29.8

Q ss_pred             CeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         203 GITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       203 ~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      .+.+++..++..++++-+ .|+++|+|++.+ ++++.+
T Consensus       237 ~~~~~~~~~~~~~lftl~-~D~~LRiWsl~t-~~~v~t  272 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLS-LDYKLKVLDLST-NQCVET  272 (950)
T ss_dssp             CEEEEEEETTTTEEEEEE-TTCEEEEEETTT-TEEEEE
T ss_pred             eEEEEeecCCCcEEEEEE-CCCEEEEEECCC-CCeEee
Confidence            467788888888999999 799999999988 655544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=85.39  E-value=15  Score=30.53  Aligned_cols=110  Identities=14%  Similarity=0.010  Sum_probs=55.4

Q ss_pred             ceeEEEEcCC--CCEEEEe-eCCcEEEEEcCCCCCeeeeeccccc----------------ccccceEEEEEcCCCCcEE
Q psy2305         114 HAYSLAFSLD--GNKIYAG-FLSEVKIFSTDRPGRECVSRNLKPW----------------FRKNIVSAIAINPVHPDIC  174 (334)
Q Consensus       114 ~v~~~~~~~~--~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~l  174 (334)
                      .|.++++.|.  ...|.++ ..+.|...  ...++...... ...                .....+.+|.++|.....+
T Consensus       116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S--~DgG~tW~~~~-~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l  192 (394)
T 3b7f_A          116 HVFWLTPGHASEPGTWYAGTSPQGLFRS--TDHGASWEPVA-GFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHL  192 (394)
T ss_dssp             EEEEEEECCTTSTTCEEEEEETTEEEEE--SSTTSBCEECH-HHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCE
T ss_pred             ceeEEEeCCCCCCCEEEEEecCCcEEEE--cCCCCCeEECc-CccCCccccccccccccCCCCCCceeEEEECCCCCCEE
Confidence            5778999872  3445544 45554443  32244333211 010                1123578999998432245


Q ss_pred             EEeecCCeEEEEECCCCCceEeecc-----C--------CCCeEEEEEccC-CcEEEeeecCCCeEEEE
Q psy2305         175 ALGTYSKIIGLFSDSDGRPLFFLKG-----H--------NGGITHLEFSSN-GILLFSGARKDCEIICW  229 (334)
Q Consensus       175 ~~~~~dg~i~i~d~~~~~~~~~~~~-----~--------~~~i~~~~~~~~-~~~l~~~~~~d~~i~iw  229 (334)
                      ..+..++.|...+ ..++.-..+..     +        ...+.++.+.|. ...|+++. ..+ |...
T Consensus       193 ~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-~~g-l~~s  258 (394)
T 3b7f_A          193 YIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-HCG-IYRM  258 (394)
T ss_dssp             EEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-TTE-EEEE
T ss_pred             EEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-CCe-EEEe
Confidence            5565555555443 22332222210     0        124889999986 35666676 444 4433

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=82.16  E-value=5.2  Score=35.51  Aligned_cols=59  Identities=17%  Similarity=0.216  Sum_probs=39.5

Q ss_pred             cccceecCCCcEEEEeeCC------------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305          68 PKTSSIDGFTSYFLCSSMY------------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG  130 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (334)
                      |-.|.|+|.|++++.-..+            ..+.+.+..+++..+.+.....    +.++.++|+||++.|++.
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g----aE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG----CEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT----CEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC----ccCcCeeECCCCCEEEEE
Confidence            3446778999876654322            2355557777777666655332    279999999999888754

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=80.05  E-value=11  Score=33.24  Aligned_cols=61  Identities=16%  Similarity=0.201  Sum_probs=43.0

Q ss_pred             cceEEEEEcCCCCcEEE-Eeec-----------CCeEEEEECCCCCceEeeccC-CCCeEEEEEccCCcEEEeee
Q psy2305         159 NIVSAIAINPVHPDICA-LGTY-----------SKIIGLFSDSDGRPLFFLKGH-NGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~-~~~~-----------dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~  220 (334)
                      .....|.|.++|. +.+ +-..           ...+..++..+++....+.+. ...++.++|+||++.|+++-
T Consensus       476 nsPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          476 NSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CCEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            3467899999998 544 3211           126777787778766655543 35689999999999888776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	334
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 22/155 (14%), Positives = 54/155 (34%), Gaps = 9/155 (5%)

Query: 76  FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEV 135
            T  F+  +  A   LWD   G  + T+  +    ++    ++ F  +GN    G  S+ 
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDIN---AICFFPNGNAFATG--SDD 247

Query: 136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF 195
                     +              +++++ +     +   G       ++         
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAG 306

Query: 196 FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD 230
            L GH+  ++ L  + +G+ + +G+  D  +  W+
Sbjct: 307 VLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.3 bits (134), Expect = 1e-09
 Identities = 33/304 (10%), Positives = 75/304 (24%), Gaps = 43/304 (14%)

Query: 6   DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYV 65
            +    D   L++ S D  L  +D  +     ++   S+                +    
Sbjct: 60  AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW---------------VMTCA 104

Query: 66  WYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGN 125
           + P  + +       +CS         +       A +  Y           +  S    
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164

Query: 126 KIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGL 185
                 +   +  +T       V         +  VS                      L
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK--------------L 210

Query: 186 FSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV 245
           +   +G       GH   I  + F  NG    +G+      +     +   + ++    +
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270

Query: 246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN 305
                V F        LL+G  + + ++W+                +     + H +  +
Sbjct: 271 CGITSVSFS--KSGRLLLAGYDDFNCNVWDALK------------ADRAGVLAGHDNRVS 316

Query: 306 GVRW 309
            +  
Sbjct: 317 CLGV 320

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 4e-09
 Identities = 39/299 (13%), Positives = 87/299 (29%), Gaps = 34/299 (11%)

Query: 6   DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYV 65
            V   P  + +++ S D  ++ +D  +    +++   ++    +++    K        +
Sbjct: 22  RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 81

Query: 66  WYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATY---------------RPYNQVD 110
                          +    +    +     G+   +                       
Sbjct: 82  TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 141

Query: 111 EVTHAYSLAFSLDGNKIYAG------------FLSEVKIFSTDRPGRECVS---RNLKPW 155
                  +  + DG  I +                        R   EC+S    +    
Sbjct: 142 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 201

Query: 156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGIL 215
             +   S    +         G+  K I ++  S G  L  L GH+  +  + F S G  
Sbjct: 202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 261

Query: 216 LFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIW 274
           + S A  D  +  WD +N  C+  T          + F     + Y+++G+ +  + +W
Sbjct: 262 ILSCA-DDKTLRVWDYKNKRCM-KTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 7e-06
 Identities = 32/236 (13%), Positives = 76/236 (32%), Gaps = 45/236 (19%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
           P+G  +++ S D  ++ +++ +    K+                                
Sbjct: 111 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW--------------------VRMVR 150

Query: 71  SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130
            + DG  +     S    + +W     E KA  R +  V        ++++ + +     
Sbjct: 151 PNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVV-----ECISWAPESSYSSIS 203

Query: 131 FLSEVKIFSTDRPGRECVS----RNLKPWFR------------KNIVSAIAINPVHPDIC 174
             +  +   + +PG   +S    + +K W               N V  +  +     I 
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL 263

Query: 175 ALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD 230
           +     K + ++   + R +  L  H   +T L+F      + +G+  D  +  W+
Sbjct: 264 S-CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV-DQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 190 DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
                + L GH   +T + F     ++ S +  D  I  WD       
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASE-DATIKVWDYETGDFE 52

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 44/317 (13%), Positives = 86/317 (27%), Gaps = 44/317 (13%)

Query: 11  PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKT 70
            DG  L T  N                 V+R S+    L   L                +
Sbjct: 72  NDGEYLATGCNKTTQ-------------VYRVSDG--SLVARLSDDSAANKDPENLNTSS 116

Query: 71  SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG 130
           S         +C S         +    I+       ++  +   +              
Sbjct: 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 176

Query: 131 FLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSD 190
            L       T R       +       ++ V+ +A++P      A G+  + + ++    
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 236

Query: 191 GR-------PLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPR 243
           G              GH   +  + F+ +G  + SG+  D  +  W+L+N      +   
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-DRSVKLWNLQNANNKSDSKTP 295

Query: 244 QVSTNQRVYFDLTSC---------SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPL 294
              T +  Y                 Y+LSG+ +  +  W+  +              PL
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS------------GNPL 343

Query: 295 YKFSAHQDCTNGVRWKH 311
                H++    V   +
Sbjct: 344 LMLQGHRNSVISVAVAN 360

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 18/183 (9%)

Query: 66  WYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHA--YSLAFSLD 123
                +   G   Y    S+   + +WDS  G +       N+         YS+ F+ D
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265

Query: 124 GNKIYAGFL-SEVKIFSTDRPGRE-------CVSRNLKPWFRKNIVSAIAINPVHPDICA 175
           G  + +G L   VK+++      +         +  +     K+ V ++A    + +   
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYIL 324

Query: 176 LGTYSKIIGLFSDSDGRPLFFLKGHNGGITHL------EFSSNGILLFSGARKDCEIICW 229
            G+  + +  +    G PL  L+GH   +  +             +  +G+  DC+   W
Sbjct: 325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS-GDCKARIW 383

Query: 230 DLR 232
             +
Sbjct: 384 KYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 11/126 (8%)

Query: 6   DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYV 65
            V    DG  +++ S D  ++ ++L +  +      P++   ++ Y         +    
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI---GHKDFVLSVA 315

Query: 66  WYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPY-NQVDEVTHAYSLAFSLDG 124
                        Y L  S    +  WD   G      + + N V  V  A   +   + 
Sbjct: 316 TTQN-------DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 125 NKIYAG 130
           N    G
Sbjct: 369 NVFATG 374

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 35/305 (11%), Positives = 83/305 (27%), Gaps = 46/305 (15%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPK 69
             D   +++   DN ++            +W  +    K    L    G ++        
Sbjct: 22  QYDDQKIVSGLRDNTIK------------IWDKNTLECK--RILTGHTGSVLCLQYDERV 67

Query: 70  TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA 129
             +    ++  +       +        E     R  N +             D      
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 130 GFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDS 189
             L  V +                                        +  + I +++ S
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSA---------------------SGDRTIKVWNTS 166

Query: 190 DGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQ 249
               +  L GH  GI  L++    ++       D  I  WD+    C+     R +  ++
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVV---SGSSDNTIRLWDIECGACL-----RVLEGHE 218

Query: 250 RVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW 309
            +   +   +  ++SG  +G + +W++  +  P +P   +    L     H      +++
Sbjct: 219 ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP---AGTLCLRTLVEHSGRVFRLQF 275

Query: 310 KHHKF 314
              + 
Sbjct: 276 DEFQI 280

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 6/156 (3%)

Query: 157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILL 216
             ++++ +       +    G   K+I ++   + + L  L GH+GG+  L+++  GIL+
Sbjct: 12  MTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68

Query: 217 FSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV 276
                +   +        GC  H F    ST + +         Y+++G+ +  L +W +
Sbjct: 69  SGSTDRTVRVWDI---KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 277 NTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHH 312
              +      EE     ++          GV   H 
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 20/161 (12%), Positives = 41/161 (25%), Gaps = 5/161 (3%)

Query: 156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP--LFFLKGHNGGITHLEFSSNG 213
           F    +S  A N       A+   +  + ++  S  +   +  LK HNG +T ++++ + 
Sbjct: 5   FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 214 ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSI 273
             + +    D     W          T                        G+ +  +SI
Sbjct: 64  NRIVTCGT-DRNAYVWT-LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

Query: 274 WNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF 314
                 N                 S      + +       
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 36/281 (12%), Positives = 83/281 (29%), Gaps = 21/281 (7%)

Query: 10  APDGTCLLTNSNDNHLRTFDLPS-------ELHCKSVWRPSNQRPKLNYTLKIKEGGIIY 62
              G  +++ S+DN L+ +   +         H   VW     R  +  +        ++
Sbjct: 24  QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ-MRDNIIISGSTDRTLKVW 82

Query: 63  DYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEV--THAYSLAF 120
           +        ++ G TS   C  ++    +  S    ++       Q   V   H  ++  
Sbjct: 83  NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142

Query: 121 SLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS 180
                +       +  +   D     C+        R                   G+  
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY------SLQFDGIHVVSGSLD 196

Query: 181 KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT 240
             I ++    G  +  L GH    + +E   N   +      D  +  WD++   C+   
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQTL 253

Query: 241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNL 281
                  +           N++++ + +G + +W++ T   
Sbjct: 254 QGPNKHQSAVTCLQ--FNKNFVITSSDDGTVKLWDLKTGEF 292

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 28/206 (13%), Positives = 62/206 (30%), Gaps = 23/206 (11%)

Query: 35  HCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDS 94
             + V    +   K+           +  +     +   DG   + +  S+   I +WD 
Sbjct: 147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWDV 204

Query: 95  VGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-SEVKIFSTDRPGRECVSRNLK 153
             G    T   +        + +    L  N + +G   S VKI+               
Sbjct: 205 ETGNCIHTLTGH-------QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ-----T 252

Query: 154 PWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-----GHNGGITHLE 208
                   SA+     + +     +    + L+    G  +  L      G  G +  + 
Sbjct: 253 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 312

Query: 209 FSSNGILLFSGAR---KDCEIICWDL 231
            S+  ++   G+R   ++ +++  D 
Sbjct: 313 ASNTKLVCAVGSRNGTEETKLLVLDF 338

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 6e-04
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 197 LKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI 237
             GHN  IT L  S++G  LFS    +  I  WD+      
Sbjct: 8   RYGHNKAITALSSSADGKTLFSADA-EGHINSWDISTGISN 47

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 36/269 (13%), Positives = 71/269 (26%), Gaps = 23/269 (8%)

Query: 7   VDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVW 66
              +P G    +     ++R +D     H      P    P  + +   +   I      
Sbjct: 64  AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123

Query: 67  YPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK 126
             +   +  F +     ++       +SV  +    +R  +  D+ T A           
Sbjct: 124 RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS 183

Query: 127 IYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLF 186
            +      V     +  G    S                   V  D              
Sbjct: 184 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS------------ 231

Query: 187 SDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS 246
                        H+G +  L +S +G  + S +  D  I  W++     +  T P    
Sbjct: 232 --------LKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIWNVAT-LKVEKTIPVGTR 281

Query: 247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWN 275
              +    +      L+S + NG ++  N
Sbjct: 282 IEDQQL-GIIWTKQALVSISANGFINFVN 309

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 200 HNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS 259
           H   +  L+F+  G    S   KD  +  W       I  +      ++  +  D++   
Sbjct: 264 HESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGASIFQSKE----SSSVLSCDISVDD 318

Query: 260 NYLLSGNTNGDLSIWNV 276
            Y+++G+ +   +++ V
Sbjct: 319 KYIVTGSGDKKATVYEV 335

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.98
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.91
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.87
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.87
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.74
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.63
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.63
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.57
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.51
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.5
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.49
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.46
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.45
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.45
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.43
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.43
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.43
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.39
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.38
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.33
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.21
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.2
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.06
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.03
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.89
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.67
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.61
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.5
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.5
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.48
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.18
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.16
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.99
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.94
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.85
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.82
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.74
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.53
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.49
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.48
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.41
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.38
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.18
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.15
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.08
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.06
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.01
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	96.75
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.53
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.46
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.38
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.36
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.2
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.19
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.08
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.25
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	90.82
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	85.39

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-44  Score=300.61  Aligned_cols=278  Identities=12%  Similarity=0.128  Sum_probs=232.1

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+++|+|+|++||+|+ ||.|+|||+.+.....          .........|.+.|.+++|       +|++++|+
T Consensus        52 ~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~----------~~~~~~~~~h~~~I~~v~~-------s~dg~~l~  113 (337)
T d1gxra_          52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS----------PVSQLDCLNRDNYIRSCKL-------LPDGCTLI  113 (337)
T ss_dssp             SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS----------CSEEEECSCTTSBEEEEEE-------CTTSSEEE
T ss_pred             CcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc----------eeEEeeecCCCCcEEEEEE-------cCCCCEEE
Confidence            5799999999999999987 8999999998765431          0111222346678998888       67999999


Q ss_pred             EeeCCCcEEEEeCCCC--eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          82 CSSMYAPIHLWDSVGG--EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      +++.|+.|++||+...  +....+..+..     .+..++|+|++.++++++ ++.+++|++.+ ++...    ....|.
T Consensus       114 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~-~~~~~----~~~~~~  183 (337)
T d1gxra_         114 VGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVR----QFQGHT  183 (337)
T ss_dssp             EEESSSEEEEEECCCC--EEEEEEECSSS-----CEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEE----EECCCS
T ss_pred             Eeecccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccc-ccccc----cccccc
Confidence            9999999999998754  34455554443     789999999999999887 99999999986 44443    567889


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      ..+.+++|++++. .+++++.|+.+++||+++++.+..+. |...|.+++|+|++++|++++ .|+.+++||++. ....
T Consensus       184 ~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~~  259 (337)
T d1gxra_         184 DGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNK-PDKY  259 (337)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTS-SCEE
T ss_pred             ccccccccccccc-ccccccccccccccccccceeecccc-cccceEEEEEcccccccceec-cccccccccccc-cccc
Confidence            9999999999999 99999999999999999998887765 888999999999999999999 899999999987 4432


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccc
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDL  318 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~  318 (334)
                       ....  +...+.+++|+|++++|++++.||.|++||+.++            +.+..+ .|...|.+++|  +|++   
T Consensus       260 -~~~~--~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~------------~~~~~~-~~~~~v~~~~~--s~d~---  318 (337)
T d1gxra_         260 -QLHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG------------ASIFQS-KESSSVLSCDI--SVDD---  318 (337)
T ss_dssp             -EECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------------CEEEEE-ECSSCEEEEEE--CTTS---
T ss_pred             -cccc--cccccceEEECCCCCEEEEEeCCCeEEEEECCCC------------CEEEEc-cCCCCEEEEEE--eCCC---
Confidence             3333  3667899999999999999999999999999987            455544 47789999999  9999   


Q ss_pred             eeeEEeeecceeeee
Q psy2305         319 LVADATCSGQITNVK  333 (334)
Q Consensus       319 ~~~l~t~~~d~~i~~  333 (334)
                       ++|++|+.||+|++
T Consensus       319 -~~l~t~s~D~~I~v  332 (337)
T d1gxra_         319 -KYIVTGSGDKKATV  332 (337)
T ss_dssp             -CEEEEEETTSCEEE
T ss_pred             -CEEEEEeCCCeEEE
Confidence             99999999999875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-43  Score=288.76  Aligned_cols=277  Identities=18%  Similarity=0.204  Sum_probs=247.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|++++|+|++++||+|+.||+|+|||+.+++..              ..+.. |...|.+++|       +|++.+++
T Consensus        18 ~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~--------------~~~~~-h~~~V~~~~~-------~~~~~~~~   75 (317)
T d1vyhc1          18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--------------RTLKG-HTDSVQDISF-------DHSGKLLA   75 (317)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--------------EEECC-CSSCEEEEEE-------CTTSSEEE
T ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE--------------EEEeC-CCCcEEEEee-------eccccccc
Confidence            57999999999999999999999999999988866              35543 5678988888       67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      ++..++.+.+|+....+....+..+..     .+.++.|+|+++.+++++ |+.+++||+++ +....    .+..|...
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~----~~~~~~~~  145 (317)
T d1vyhc1          76 SCSADMTIKLWDFQGFECIRTMHGHDH-----NVSSVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVK----TFTGHREW  145 (317)
T ss_dssp             EEETTSCCCEEETTSSCEEECCCCCSS-----CEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEE----EEECCSSC
T ss_pred             ccccccccccccccccccccccccccc-----cceeeeccCCCceEEeeccCcceeEeeccc-ceeee----EEccCCCc
Confidence            999999999999988877766665444     789999999999999887 99999999997 55554    57789999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC--------------------cEEEeee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG--------------------ILLFSGA  220 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~~~  220 (334)
                      +.+++|+|++. +|++++.|+.|++|++++++....+.+|...+.+++|+|++                    .++++++
T Consensus       146 ~~~~~~~~~~~-~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (317)
T d1vyhc1         146 VRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  224 (317)
T ss_dssp             EEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             ceeeecccCCC-EEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence            99999999999 99999999999999999999999999999999999998764                    4688899


Q ss_pred             cCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccc
Q psy2305         221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH  300 (334)
Q Consensus       221 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  300 (334)
                       .|+.|++||+++ +.++..+..|  ...+.+++|+|++++|++++.||.|++||+.++            +++..+.+|
T Consensus       225 -~d~~i~~~~~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~h  288 (317)
T d1vyhc1         225 -RDKTIKMWDVST-GMCLMTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK------------RCMKTLNAH  288 (317)
T ss_dssp             -TTSEEEEEETTT-TEEEEEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTS------------CCCEEEECC
T ss_pred             -CCCEEEEEECCC-CcEEEEEeCC--CCCEEEEEECCCCCEEEEEECCCeEEEEECCCC------------cEEEEEcCC
Confidence             899999999998 7778888776  667889999999999999999999999999998            778889999


Q ss_pred             ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         301 QDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       301 ~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+.|++++|  +|++    ++|++|+.||+|++
T Consensus       289 ~~~V~~~~~--s~~~----~~l~s~s~Dg~i~i  315 (317)
T d1vyhc1         289 EHFVTSLDF--HKTA----PYVVTGSVDQTVKV  315 (317)
T ss_dssp             SSCEEEEEE--CSSS----SCEEEEETTSEEEE
T ss_pred             CCCEEEEEE--cCCC----CEEEEEeCCCeEEE
Confidence            999999999  9999    99999999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.3e-43  Score=296.86  Aligned_cols=295  Identities=18%  Similarity=0.251  Sum_probs=228.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCC---cceeeeeeeceeEEEEEEecccceecCCCc
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPK---LNYTLKIKEGGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      ++|+|++|+|||++||+|+ |++|+|||+.+++....+.........   ........+...|.+++|       +|+++
T Consensus        63 ~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~-------s~~~~  134 (388)
T d1erja_          63 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF-------SPDGK  134 (388)
T ss_dssp             SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE-------CTTSS
T ss_pred             CcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEE-------CCCCC
Confidence            6799999999999999986 899999999998876554433221111   111222235567888877       77999


Q ss_pred             EEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          79 YFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        79 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +|++|+.||.|++||...++....+..+..     .|.++++++++..+++++ ++.+++||... .....    ... +
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~----~~~-~  203 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRKIVMILQGHEQ-----DIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSL----TLS-I  203 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE----EEE-C
T ss_pred             cceecccccccccccccccccccccccccc-----cccccccccccccccccccceeeeeeeccc-ccccc----ccc-c
Confidence            999999999999999999999888877655     899999999999999887 99999999985 33332    233 3


Q ss_pred             ccceEEEEEcC-CCCcEEEEeecCCeEEEEECCCCCceEee-------ccCCCCeEEEEEccCCcEEEeeecCCCeEEEE
Q psy2305         158 KNIVSAIAINP-VHPDICALGTYSKIIGLFSDSDGRPLFFL-------KGHNGGITHLEFSSNGILLFSGARKDCEIICW  229 (334)
Q Consensus       158 ~~~v~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iw  229 (334)
                      .....++.+.+ ++. +|++++.|+.|++||.++++....+       .+|...|.+++|+|++++|++++ .|+.|++|
T Consensus       204 ~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iw  281 (388)
T d1erja_         204 EDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLW  281 (388)
T ss_dssp             SSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEE
T ss_pred             ccccccccccCCCCC-eEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE-CCCcEEEE
Confidence            34455555655 566 9999999999999999988776655       46888999999999999999999 89999999


Q ss_pred             EccCCCccc---------eeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccc
Q psy2305         230 DLRNPGCIL---------HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH  300 (334)
Q Consensus       230 d~~~~~~~~---------~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  300 (334)
                      |++......         .......+...+.+++|+|++++|++|+.||.|++||+.++            +++..+.+|
T Consensus       282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~------------~~~~~l~~H  349 (388)
T d1erja_         282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG------------NPLLMLQGH  349 (388)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC------------CEEEEEECC
T ss_pred             eccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC------------cEEEEEeCC
Confidence            998622111         01111223567889999999999999999999999999998            788899999


Q ss_pred             ccccceeeecc----CCCcccceeeEEeeecceeeee
Q psy2305         301 QDCTNGVRWKH----HKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       301 ~~~i~~~~~~~----s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+.|.++++..    +|++    ++|||||.||+|++
T Consensus       350 ~~~V~~~~~~~~~~~spd~----~~l~s~s~Dg~I~i  382 (388)
T d1erja_         350 RNSVISVAVANGSSLGPEY----NVFATGSGDCKARI  382 (388)
T ss_dssp             SSCEEEEEECSSCTTCTTC----EEEEEEETTSEEEE
T ss_pred             CCCEEEEEEecCcccCCCC----CEEEEEeCCCEEEE
Confidence            99998876310    7899    99999999999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-43  Score=296.52  Aligned_cols=301  Identities=13%  Similarity=0.062  Sum_probs=229.5

Q ss_pred             CCceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           1 MDIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         1 ~d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +|+|+|++|+|||++||+|+.|+.|+||+..+++..            ....+. +|...|.+++|       +|++++|
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~------------~~~~l~-gH~~~V~~l~f-------sp~~~~l   66 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV------------QVHELK-EHNGQVTGVDW-------APDSNRI   66 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE------------EEEEEE-CCSSCEEEEEE-------ETTTTEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE------------EEEEec-CCCCCEEEEEE-------CCCCCEE
Confidence            489999999999999999999999999999877643            113344 46688999888       6699999


Q ss_pred             EEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++++.|+.|++||+.++.....+....+..   .|.+++|+|+++.|++++ |+.+++|+++........ ......|..
T Consensus        67 ~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~---~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~-~~~~~~~~~  142 (371)
T d1k8kc_          67 VTCGTDRNAYVWTLKGRTWKPTLVILRINR---AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC-KHIKKPIRS  142 (371)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEECCCCSS---CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-EEECTTCCS
T ss_pred             EEEECCCeEEEEeecccccccccccccccc---cccccccccccccceeecccCcceeeeeecccccccc-ccccccccc
Confidence            999999999999998877665554433333   899999999999999987 999999999864332221 114567889


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCC------------------CceEeeccCCCCeEEEEEccCCcEEEeeec
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDG------------------RPLFFLKGHNGGITHLEFSSNGILLFSGAR  221 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  221 (334)
                      .|.+++|+|+++ +|++|+.|+.|++||+...                  +.+.....|...|.+++|+|++++|++++ 
T Consensus       143 ~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-  220 (371)
T d1k8kc_         143 TVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-  220 (371)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-
T ss_pred             cccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc-
Confidence            999999999999 9999999999999998543                  23455577889999999999999999999 


Q ss_pred             CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCC--C-----CCCcc------
Q psy2305         222 KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLP--S-----SPYEE------  288 (334)
Q Consensus       222 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~-----~~~~~------  288 (334)
                      .|+.|++||+.. +..+..+..+  ..++.+++|+|++++|++|. |+.+++|........  .     .+...      
T Consensus       221 ~d~~i~iwd~~~-~~~~~~~~~~--~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (371)
T d1k8kc_         221 HDSTVCLADADK-KMAVATLASE--TLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT  296 (371)
T ss_dssp             TTTEEEEEEGGG-TTEEEEEECS--SCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred             cCCcceEEeeec-ccceeeeecc--cccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCcccccccccc
Confidence            899999999998 6777777765  56788999999999888765 777777654332111  0     00000      


Q ss_pred             ----------------ccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         289 ----------------SVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       289 ----------------~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                                      ...........|.+.|+++++  .|.+..+...|+|+|.||.|++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~--~~~~~~~~~~~~T~g~Dg~v~i  355 (371)
T d1k8kc_         297 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISV--LSGGKAKCSQFCTTGMDGGMSI  355 (371)
T ss_dssp             HHHHHHHCCCCC---------CCCSSSSSSCEEEEEE--EESTTTSCSEEEEEETTSEEEE
T ss_pred             ceeeEecccceeEEeccccccceecccccCCEEEEEE--eCCCCcceEEEEEEcCCCeEEE
Confidence                            000111112348889999999  7755333346999999999986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.9e-43  Score=287.74  Aligned_cols=277  Identities=12%  Similarity=0.089  Sum_probs=227.5

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      +..++++|+|+.||.++ ++.|.+|++.+....              ..+. .|...|.+++|       +|+|++|++|
T Consensus        20 ~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~--------------~~~~-~H~~~v~~~~~-------sp~g~~latg   76 (311)
T d1nr0a1          20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT--------------EIYT-EHSHQTTVAKT-------SPSGYYCASG   76 (311)
T ss_dssp             CCCCEECTTSSEEEEEE-TTEEEEEETTCSSCC--------------EEEC-CCSSCEEEEEE-------CTTSSEEEEE
T ss_pred             eEEEEEcCCCCEEEEEe-CCEEEEEECCCCcee--------------EEEc-CCCCCEEEEEE-------eCCCCeEecc
Confidence            45689999999999885 567999999987765              3444 46788999888       7799999999


Q ss_pred             eCCCcEEEEeCCCCeee--EEEcCccccccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          84 SMYAPIHLWDSVGGEIK--ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      +.||.|++||+.+++..  ..+..+..     +|.+++|+|++++|++++   +..+++|++++ ++...    .+.+|.
T Consensus        77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~-~~~~~----~l~~h~  146 (311)
T d1nr0a1          77 DVHGNVRIWDTTQTTHILKTTIPVFSG-----PVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNG----NLTGQA  146 (311)
T ss_dssp             ETTSEEEEEESSSTTCCEEEEEECSSS-----CEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCBCB----CCCCCS
T ss_pred             ccCceEeeeeeeccccccccccccccC-----cccccccccccccccccccccccccccccccc-ccccc----cccccc
Confidence            99999999999887654  34554433     899999999999998775   46699999986 44444    578899


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      ..|++++|+|+++..|++|+.|+.|++||+++++....+..|..+|.++.|+|++++|++++ .|+.+++||++. +...
T Consensus       147 ~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~-~~~~  224 (311)
T d1nr0a1         147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVD-GTKT  224 (311)
T ss_dssp             SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-CCEE
T ss_pred             cccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccc-cccccccccccc-cccc
Confidence            99999999999985688999999999999999999999999999999999999999999999 899999999987 4444


Q ss_pred             eeeccc-----ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc-ccceeeeccC
Q psy2305         239 HTFPRQ-----VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD-CTNGVRWKHH  312 (334)
Q Consensus       239 ~~~~~~-----~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~s  312 (334)
                      ..+...     .+...+.+++|+|++++|++|+.||.|+|||++++            +++..+..|.. ....+.+  .
T Consensus       225 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~------------~~~~~l~~~~~~~~~~~~~--~  290 (311)
T d1nr0a1         225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL------------KVEKTIPVGTRIEDQQLGI--I  290 (311)
T ss_dssp             EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSSGGGCEEEE--E
T ss_pred             ccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC------------cEEEEEECCCCccceEEEE--E
Confidence            444321     13567899999999999999999999999999998            67777766543 2233344  4


Q ss_pred             CCcccceeeEEeeecceeeee
Q psy2305         313 KFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       313 ~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +++    ..|++++.||.|++
T Consensus       291 ~~~----~~l~s~s~dG~i~~  307 (311)
T d1nr0a1         291 WTK----QALVSISANGFINF  307 (311)
T ss_dssp             ECS----SCEEEEETTCCEEE
T ss_pred             ecC----CEEEEEECCCEEEE
Confidence            466    77999999999875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.2e-41  Score=278.12  Aligned_cols=278  Identities=15%  Similarity=0.158  Sum_probs=232.4

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|++++|+|++++||+|+.||+|+|||+.+++..              ..+. .|...|.+++|       +|++++++
T Consensus        56 ~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~--------------~~~~-~~~~~v~~v~~-------~~~~~~l~  113 (340)
T d1tbga_          56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV--------------HAIP-LRSSWVMTCAY-------APSGNYVA  113 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE--------------EEEE-CSCSCEEEEEE-------CTTSSEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCceeeeecccceeE--------------EEEe-cccccEEeeEe-------eccceeee
Confidence            57999999999999999999999999999988765              3444 35678988888       67999999


Q ss_pred             EeeCCCcEEEEeCCCCe----eeEEEcCccccccccceeEEEEcCCCCEEEEe-eCCcEEEEEcCCCCCeeeeecccccc
Q psy2305          82 CSSMYAPIHLWDSVGGE----IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-FLSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +++.|+.+.+|+.....    ....+..+..     .........+ ..+... .+.....+.... .....    ....
T Consensus       114 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~  182 (340)
T d1tbga_         114 CGGLDNICSIYNLKTREGNVRVSRELAGHTG-----YLSCCRFLDD-NQIVTSSGDTTCALWDIET-GQQTT----TFTG  182 (340)
T ss_dssp             EEETTCCEEEEESSSSCSCCCEEEEECCCSS-----CEEEEEEEET-TEEEEEETTTEEEEEETTT-TEEEE----EEEC
T ss_pred             eecccceeecccccccccccccceecccccc-----cccccccccc-ccccccccccccccccccc-ccccc----cccc
Confidence            99999999999976543    3344444332     3344444444 445544 488888888875 22222    3556


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      +...+....+.+.+. ++++++.|+.|++||+++++++..+.+|...|++++|+|++++|++++ .|+.|++||++. ..
T Consensus       183 ~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s-~d~~i~~~~~~~-~~  259 (340)
T d1tbga_         183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRA-DQ  259 (340)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT-TE
T ss_pred             cceeEeeeccccccc-eeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeecc-cc
Confidence            777899999999998 999999999999999999999999999999999999999999999999 899999999997 55


Q ss_pred             cceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305         237 ILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER  316 (334)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~  316 (334)
                      ....+........+.+++|+|++++|++|+.||.|++||+.++            +.+..+.+|.+.|++++|  +|++ 
T Consensus       260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~H~~~V~~l~~--s~d~-  324 (340)
T d1tbga_         260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA------------DRAGVLAGHDNRVSCLGV--TDDG-  324 (340)
T ss_dssp             EEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC------------CEEEEECCCSSCEEEEEE--CTTS-
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC------------cEEEEEcCCCCCEEEEEE--eCCC-
Confidence            5666655555677889999999999999999999999999988            788899999999999999  9999 


Q ss_pred             cceeeEEeeecceeeee
Q psy2305         317 DLLVADATCSGQITNVK  333 (334)
Q Consensus       317 ~~~~~l~t~~~d~~i~~  333 (334)
                         ++|++||.||+|++
T Consensus       325 ---~~l~s~s~Dg~v~i  338 (340)
T d1tbga_         325 ---MAVATGSWDSFLKI  338 (340)
T ss_dssp             ---SCEEEEETTSCEEE
T ss_pred             ---CEEEEEccCCEEEE
Confidence               99999999999975

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-40  Score=272.19  Aligned_cols=279  Identities=16%  Similarity=0.201  Sum_probs=212.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|++++|+|||++||+|+.||+|++||+.+++..              ..+...|...|.+++|       +|++++ +
T Consensus        13 ~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~--------------~~~~~~h~~~v~~v~~-------~~~g~~-~   70 (299)
T d1nr0a2          13 KAITALSSSADGKTLFSADAEGHINSWDISTGISN--------------RVFPDVHATMITGIKT-------TSKGDL-F   70 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--------------ECSSCSCSSCEEEEEE-------CTTSCE-E
T ss_pred             CCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--------------EEEcCCCCCcEEEEEe-------ecccee-e
Confidence            57999999999999999999999999999988765              3455567788999888       668874 5


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      +++.|+.+++|+........ ..... ......+.+++|+|+++.++++.++.+.+|+...   ...      ......+
T Consensus        71 ~~~~d~~v~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~---~~~------~~~~~~~  139 (299)
T d1nr0a2          71 TVSWDDHLKVVPAGGSGVDS-SKAVA-NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK---LTE------VPISYNS  139 (299)
T ss_dssp             EEETTTEEEEECSSSSSSCT-TSCCE-EECSSCEEEEEECTTSSCEEEEESSEEEEEETTE---EEE------EECSSCE
T ss_pred             cccceeeEEEeccCCccccc-ccccc-cccccccccccccccccccccccccccccccccc---ccc------ccccccc
Confidence            56679999999976433210 11000 0111268899999999999888889999999642   211      1234467


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE-eeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF-FLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      .+++|+|+++ ++++|+.|+.|++||+++++... ....|...|.+++|+|++++|++++ .|+.|++||+.+ +.....
T Consensus       140 ~~~~~s~~~~-~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~-~~~~~~  216 (299)
T d1nr0a2         140 SCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVAN-NFELAH  216 (299)
T ss_dssp             EEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGG-TTEESC
T ss_pred             cccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccccc
Confidence            8999999999 99999999999999998776543 3456889999999999999999999 899999999987 333222


Q ss_pred             ec-ccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccc-cccceeeeccCCCcccc
Q psy2305         241 FP-RQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQ-DCTNGVRWKHHKFERDL  318 (334)
Q Consensus       241 ~~-~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~s~~~~~~  318 (334)
                      .. ...+...+.+++|+|++++|++|+.||.|++||++++..          ........|. ..+..+.|   +++   
T Consensus       217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~----------~~~~~~~~~~~~~v~~~~~---~~~---  280 (299)
T d1nr0a2         217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD----------HPIIIKGAHAMSSVNSVIW---LNE---  280 (299)
T ss_dssp             CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS----------CCEEETTSSTTSCEEEEEE---EET---
T ss_pred             cccccccccccccccccccccceEEEcCCCEEEEEECCCCCc----------ceEEEecCCCCCcEEEEEE---CCC---
Confidence            21 122366789999999999999999999999999998643          2222333343 45565554   567   


Q ss_pred             eeeEEeeecceeeee
Q psy2305         319 LVADATCSGQITNVK  333 (334)
Q Consensus       319 ~~~l~t~~~d~~i~~  333 (334)
                       ++|++++.|++|++
T Consensus       281 -~~l~s~s~D~~i~i  294 (299)
T d1nr0a2         281 -TTIVSAGQDSNIKF  294 (299)
T ss_dssp             -TEEEEEETTSCEEE
T ss_pred             -CEEEEEeCCCEEEE
Confidence             78999999999975

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.2e-40  Score=270.09  Aligned_cols=241  Identities=19%  Similarity=0.180  Sum_probs=199.3

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|++++|+|+|++||+|+.||+|+|||+.+....            ....+ ..|...|.+++|       +|++++|+
T Consensus        59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~------------~~~~~-~~~~~~v~~v~~-------s~d~~~l~  118 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI------------LKTTI-PVFSGPVKDISW-------DSESKRIA  118 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC------------EEEEE-ECSSSCEEEEEE-------CTTSCEEE
T ss_pred             CCEEEEEEeCCCCeEeccccCceEeeeeeeccccc------------ccccc-ccccCccccccc-------cccccccc
Confidence            57999999999999999999999999999887653            11223 335678988888       67999999


Q ss_pred             EeeC--CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCE-EEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          82 CSSM--YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK-IYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        82 ~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      +++.  +..+++|++++++....+..|..     .|++++|+|++++ |++|+ |+.|++||+++ ++...    ....|
T Consensus       119 ~~~~~~~~~~~v~~~~~~~~~~~l~~h~~-----~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-~~~~~----~~~~~  188 (311)
T d1nr0a1         119 AVGEGRERFGHVFLFDTGTSNGNLTGQAR-----AMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-FKFKS----TFGEH  188 (311)
T ss_dssp             EEECCSSCSEEEEETTTCCBCBCCCCCSS-----CEEEEEECSSSSCEEEEEETTSCEEEEETTT-BEEEE----EECCC
T ss_pred             ccccccccccccccccccccccccccccc-----ccccccccccceeeecccccccccccccccc-ccccc----ccccc
Confidence            8875  45699999999988877776554     8999999999986 66776 89999999996 44444    56789


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee-------ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL-------KGHNGGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                      ...|+++.|+|+++ ++++++.|+.|++||+++++....+       .+|.+.|++++|+|++++|++++ .|+.|++||
T Consensus       189 ~~~i~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs-~Dg~v~iwd  266 (311)
T d1nr0a1         189 TKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIWN  266 (311)
T ss_dssp             SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-TTSEEEEEE
T ss_pred             cccccccccCcccc-ccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEe-CCCeEEEEE
Confidence            99999999999999 9999999999999999988777665       35888999999999999999999 899999999


Q ss_pred             ccCCCccceeeccccc-CCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305         231 LRNPGCILHTFPRQVS-TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN  277 (334)
Q Consensus       231 ~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  277 (334)
                      +++ ++++..+..+.. ...+.++.  +++.+|++++.||.|++||.+
T Consensus       267 ~~t-~~~~~~l~~~~~~~~~~~~~~--~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         267 VAT-LKVEKTIPVGTRIEDQQLGII--WTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             TTT-TEEEEEEECCSSGGGCEEEEE--ECSSCEEEEETTCCEEEEETT
T ss_pred             CCC-CcEEEEEECCCCccceEEEEE--ecCCEEEEEECCCEEEEEeCC
Confidence            998 777777765432 23344444  456789999999999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-38  Score=261.09  Aligned_cols=237  Identities=16%  Similarity=0.258  Sum_probs=201.6

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|.+++|+|+|++|++|+.||.|++||+......            ....+. .+...+..+.|       +|++.+++
T Consensus        98 ~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~------------~~~~~~-~~~~~v~~~~~-------~~~~~~l~  157 (337)
T d1gxra_          98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR------------IKAELT-SSAPACYALAI-------SPDSKVCF  157 (337)
T ss_dssp             SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E------------EEEEEE-CSSSCEEEEEE-------CTTSSEEE
T ss_pred             CcEEEEEEcCCCCEEEEeecccccccccccccccc------------cccccc-ccccccccccc-------cccccccc
Confidence            46999999999999999999999999998865533            112222 35567777777       67999999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +++.|+.|++|++.+++.......+..     .|.+++|++++..+++++ |+.+++||+++ ++.+.     ...|...
T Consensus       158 s~~~d~~i~~~~~~~~~~~~~~~~~~~-----~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~-~~~~~-----~~~~~~~  226 (337)
T d1gxra_         158 SCCSDGNIAVWDLHNQTLVRQFQGHTD-----GASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQLQ-----QHDFTSQ  226 (337)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEE-----EEECSSC
T ss_pred             ccccccccccccccccccccccccccc-----cccccccccccccccccccccccccccccc-ceeec-----ccccccc
Confidence            999999999999999998887776554     899999999999999887 99999999986 44443     3467889


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      |.+++|+|+++ ++++++.|+.+++||+++++.. ....|...|.+++|+|++++|++++ .|+.|++||+.. ++.+..
T Consensus       227 i~~l~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s-~Dg~i~iwd~~~-~~~~~~  302 (337)
T d1gxra_         227 IFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPY-GASIFQ  302 (337)
T ss_dssp             EEEEEECTTSS-EEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTT-CCEEEE
T ss_pred             eEEEEEccccc-ccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEe-CCCeEEEEECCC-CCEEEE
Confidence            99999999999 9999999999999999888765 4566999999999999999999999 899999999997 666655


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  276 (334)
                      +.   +...+.+++|+|++++|++|+.||+|+|||+
T Consensus       303 ~~---~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         303 SK---ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EE---CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cc---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            54   3567889999999999999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-37  Score=255.42  Aligned_cols=289  Identities=11%  Similarity=0.060  Sum_probs=214.7

Q ss_pred             ceeEEEEcCCCcEEEEeeCCC-eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDN-HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .+.+++|+|+|+.||.++.+. .|+.|+.......            ....+.+|+...|++++|+|     ..++++|+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~------------~~~~~~gh~~~~v~~v~fsP-----~~~g~~la   81 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVP------------PVVQFTGHGSSVVTTVKFSP-----IKGSQYLC   81 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSC------------SEEEECTTTTSCEEEEEECS-----STTCCEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCcc------------ceEEEeCCCCCCEEEEEEee-----CCCCCEEE
Confidence            356899999999999886553 3555665443322            22355566677899999966     34788999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCc---cccccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCeeeeeccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPY---NQVDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      +|+.||+|++||+..++....+..+   ......++|.+++|++++++|++++   ++.+++|+.++ ++.+.    .+.
T Consensus        82 sgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~----~~~  156 (325)
T d1pgua1          82 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-GNSLG----EVS  156 (325)
T ss_dssp             EEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-CCEEE----ECC
T ss_pred             EEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc-cccce----eee
Confidence            9999999999998654432211110   0011122899999999999988653   67899999986 55555    578


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee---ccCCCCeEEEEEccC-CcEEEeeecCCCeEEEEEc
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL---KGHNGGITHLEFSSN-GILLFSGARKDCEIICWDL  231 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~-~~~l~~~~~~d~~i~iwd~  231 (334)
                      +|...|.+++|+|+++.++++++.|+.+++||++..+....+   ..|...|.+++|+|+ +.+|++++ .|+.|++||+
T Consensus       157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~-~d~~i~iwd~  235 (325)
T d1pgua1         157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKISCFDG  235 (325)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE-TTCCEEEEET
T ss_pred             ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccc-cccceeeeee
Confidence            899999999999999856788999999999999887665554   456788999999996 68899999 8999999999


Q ss_pred             cCCCccceeecccccCC--ceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccc--ccee
Q psy2305         232 RNPGCILHTFPRQVSTN--QRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDC--TNGV  307 (334)
Q Consensus       232 ~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~  307 (334)
                      ++ ++.+..+..|....  .+.++.| |+|++|++++.|+.|+|||++++            +++..+..|...  +..+
T Consensus       236 ~~-~~~~~~l~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~  301 (325)
T d1pgua1         236 KS-GEFLKYIEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTS------------KCVQKWTLDKQQLGNQQV  301 (325)
T ss_dssp             TT-CCEEEECCBTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTT------------EEEEEEECCTTCGGGCEE
T ss_pred             cc-ccccccccccccccccceeeeec-cCCCEEEEEeCCCeEEEEECCCC------------CEEEEEEecCCcccCeEE
Confidence            98 77777887664332  2334433 68999999999999999999998            667766655543  4444


Q ss_pred             eeccCCCcccceeeEEeeecceeeee
Q psy2305         308 RWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       308 ~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      ++  .+.+.   .+|+++|.||+|++
T Consensus       302 ~~--~~~~~---~~l~s~s~dg~i~v  322 (325)
T d1pgua1         302 GV--VATGN---GRIISLSLDGTLNF  322 (325)
T ss_dssp             EE--EEEET---TEEEEEETTSCEEE
T ss_pred             EE--EECCC---CEEEEEECCCEEEE
Confidence            55  43321   47899999999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-36  Score=256.26  Aligned_cols=236  Identities=10%  Similarity=0.053  Sum_probs=193.0

Q ss_pred             ceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCe--eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCc
Q psy2305          58 GGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGE--IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSE  134 (334)
Q Consensus        58 ~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~  134 (334)
                      .++|++++|       +|++++||+++.|+.|++||+.+++  .+..++.|..     +|.+++|+|++++|++++ |+.
T Consensus         7 ~~pIt~~~~-------s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~-----~V~~l~fsp~~~~l~s~s~D~~   74 (371)
T d1k8kc_           7 VEPISCHAW-------NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-----QVTGVDWAPDSNRIVTCGTDRN   74 (371)
T ss_dssp             SSCCCEEEE-------CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSS-----CEEEEEEETTTTEEEEEETTSC
T ss_pred             CCCeEEEEE-------CCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCC-----CEEEEEECCCCCEEEEEECCCe
Confidence            366877777       7799999999999999999998776  4455665444     899999999999999987 999


Q ss_pred             EEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce----EeeccCCCCeEEEEEc
Q psy2305         135 VKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL----FFLKGHNGGITHLEFS  210 (334)
Q Consensus       135 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~i~~~~~~  210 (334)
                      |++||+.........   .+.+|...|.+++|+|+++ .|++++.|+.|++|++......    .....|...|.+++|+
T Consensus        75 i~vWd~~~~~~~~~~---~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  150 (371)
T d1k8kc_          75 AYVWTLKGRTWKPTL---VILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH  150 (371)
T ss_dssp             EEEEEEETTEEEEEE---ECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred             EEEEeeccccccccc---ccccccccccccccccccc-cceeecccCcceeeeeeccccccccccccccccccccccccc
Confidence            999999852222221   4567889999999999999 9999999999999998766543    3345788999999999


Q ss_pred             cCCcEEEeeecCCCeEEEEEccCCCcc---------------ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305         211 SNGILLFSGARKDCEIICWDLRNPGCI---------------LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN  275 (334)
Q Consensus       211 ~~~~~l~~~~~~d~~i~iwd~~~~~~~---------------~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  275 (334)
                      |++++|++++ .|+.+++||.......               ........+...+.+++|+|++++|++++.|+.|++||
T Consensus       151 p~~~~l~s~s-~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd  229 (371)
T d1k8kc_         151 PNSVLLAAGS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD  229 (371)
T ss_dssp             TTSSEEEEEE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             ccccceeccc-cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEe
Confidence            9999999999 8999999998642100               01122233466788999999999999999999999999


Q ss_pred             CCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecc
Q psy2305         276 VNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQ  328 (334)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d  328 (334)
                      +.++            +.+..+..|..+|.+++|  +|++    ++|++|+++
T Consensus       230 ~~~~------------~~~~~~~~~~~~v~s~~f--s~d~----~~la~g~d~  264 (371)
T d1k8kc_         230 ADKK------------MAVATLASETLPLLAVTF--ITES----SLVAAGHDC  264 (371)
T ss_dssp             GGGT------------TEEEEEECSSCCEEEEEE--EETT----EEEEEETTS
T ss_pred             eecc------------cceeeeecccccceeeee--cCCC----CEEEEEcCC
Confidence            9987            678888999999999999  9999    888876643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7e-36  Score=248.87  Aligned_cols=274  Identities=14%  Similarity=0.179  Sum_probs=207.9

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      |.|++|  ++++||+|+.||+|+|||+.+++..              ..+.+ |.+.|.+++|       +|+ .+|+++
T Consensus        16 itc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~--------------~~l~~-H~~~V~~l~~-------s~~-~~l~s~   70 (355)
T d1nexb2          16 ITCLQF--EDNYVITGADDKMIRVYDSINKKFL--------------LQLSG-HDGGVWALKY-------AHG-GILVSG   70 (355)
T ss_dssp             EEEEEE--ETTEEEEEETTTEEEEEETTTTEEE--------------EEEEC-CSSCEEEEEE-------ETT-TEEEEE
T ss_pred             EEEEEE--CCCEEEEEeCCCeEEEEECCCCcEE--------------EEEEC-CCCCEEEEEE-------cCC-CEEEEE
Confidence            355554  6789999999999999999988876              45554 5688999888       444 479999


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeee-------------
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVS-------------  149 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~-------------  149 (334)
                      +.|+.|++|+....+............   ......+.+++.++++++ |+.|++||+.........             
T Consensus        71 s~D~~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  147 (355)
T d1nexb2          71 STDRTVRVWDIKKGCCTHVFEGHNSTV---RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP  147 (355)
T ss_dssp             ETTCCEEEEETTTTEEEEEECCCSSCE---EEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCT
T ss_pred             ecccccccccccccccccccccccccc---cccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecc
Confidence            999999999999888776665443322   456677788888888877 899999987642110000             


Q ss_pred             -------------------e--------------------------cccccccccceEEEEEcCCCCcEEEEeecCCeEE
Q psy2305         150 -------------------R--------------------------NLKPWFRKNIVSAIAINPVHPDICALGTYSKIIG  184 (334)
Q Consensus       150 -------------------~--------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  184 (334)
                                         .                          .....++...+.++.++|++. .+++++.|+.|+
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~  226 (355)
T d1nexb2         148 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIR  226 (355)
T ss_dssp             TTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEE
T ss_pred             ccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccce-eeecccccceEE
Confidence                               0                          002234566778899999999 999999999999


Q ss_pred             EEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEe
Q psy2305         185 LFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLS  264 (334)
Q Consensus       185 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~  264 (334)
                      +||++++..+..+.+|...|.++++++  ++|++++ .||.|++||+++ ..  ..+..|...... ...++++++++++
T Consensus       227 i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~-~~--~~~~~~~~~~~~-~~~~~~~~~~l~~  299 (355)
T d1nexb2         227 IWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAA-ADGSIRGWDAND-YS--RKFSYHHTNLSA-ITTFYVSDNILVS  299 (355)
T ss_dssp             EEETTTCCEEEEECCCSSCCCEEEECS--SEEEEEC-TTSEEEEEETTT-CC--EEEEEECTTCCC-CCEEEECSSEEEE
T ss_pred             eeecccccccccccccccccccccccc--ceeeeee-cccccccccccc-cc--eecccccCCceE-EEEEcCCCCEEEE
Confidence            999999999999999999999999874  6899999 899999999987 33  233333222111 1346777877776


Q ss_pred             eecCCcEEEEeCCCCCCCCCCCcccccccc-ceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         265 GNTNGDLSIWNVNTSNLPSSPYEESVQEPL-YKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       265 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      | .||.|++||++++            +.+ ..+.+|.+.|.+++|  +|+.     ++++++.||++++
T Consensus       300 g-~d~~i~vwd~~tg------------~~~~~~~~~~~~~V~~v~~--~~~~-----~~~~~s~dg~~~l  349 (355)
T d1nexb2         300 G-SENQFNIYNLRSG------------KLVHANILKDADQIWSVNF--KGKT-----LVAAVEKDGQSFL  349 (355)
T ss_dssp             E-ETTEEEEEETTTC------------CBCCSCTTTTCSEEEEEEE--ETTE-----EEEEEESSSCEEE
T ss_pred             E-eCCEEEEEECCCC------------CEEEEEecCCCCCEEEEEE--cCCe-----EEEEEECCCcEEE
Confidence            6 5899999999998            444 356788899999999  8854     6888999998765

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-36  Score=248.00  Aligned_cols=251  Identities=12%  Similarity=0.071  Sum_probs=193.4

Q ss_pred             CceeEEEEcC--CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           2 DIEEDVDEAP--DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         2 d~V~~~~~sp--~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      ..|++++|+|  +|.+||+|+.||+|+|||+..++........      . ......+.++|.+++|       ++++++
T Consensus        64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~------~-~~~~~~~~~~v~~v~~-------s~~~~~  129 (325)
T d1pgua1          64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN------V-KSEFQVLAGPISDISW-------DFEGRR  129 (325)
T ss_dssp             SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE------E-EEEEECCSSCEEEEEE-------CTTSSE
T ss_pred             CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecc------c-ccccccccCcEEEEEE-------CCCCCc
Confidence            4699999998  6789999999999999999766543111000      0 0111224567888877       679998


Q ss_pred             EEEee--CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCE-EEEee-CCcEEEEEcCCCCCeeeeeccccc
Q psy2305          80 FLCSS--MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNK-IYAGF-LSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        80 l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      |++++  .++.+.+|+..+++.+..+..|..     .|.+++|+|++++ +++++ |+.+++||+.. .+...... ...
T Consensus       130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~-~~~~~~~~-~~~  202 (325)
T d1pgua1         130 LCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ-----RINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSASDR-THH  202 (325)
T ss_dssp             EEEEECCSSCSEEEEETTTCCEEEECCSCSS-----CEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEEEEEC-SSS
T ss_pred             cceeeccccceEEEEeecccccceeeeeccc-----ccccccccccccceEEEeecccccccccccc-cccceecc-ccc
Confidence            88765  467899999999999888877554     8999999999876 45666 99999999875 33333211 356


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEc---cCCcEEEeeecCCCeEEEEEcc
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFS---SNGILLFSGARKDCEIICWDLR  232 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~~d~~i~iwd~~  232 (334)
                      .|...|.+++|+|++..++++++.|+.|++||+++++.+..+.+|..++.++.|+   |+|++|++++ .|+.|+|||++
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s-~D~~i~iwd~~  281 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIRVWDVT  281 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEEEEETT
T ss_pred             CCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe-CCCeEEEEECC
Confidence            7788999999999854499999999999999999999999999888877666665   7899999999 89999999999


Q ss_pred             CCCccceeecccccCCceE--EEEecCCCceEEeeecCCcEEEEeC
Q psy2305         233 NPGCILHTFPRQVSTNQRV--YFDLTSCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~--~~~~s~~~~~l~~~~~dg~i~iwd~  276 (334)
                      + ++++..+..+.......  ++.+.++ .+|++++.||.|++||+
T Consensus       282 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         282 T-SKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             T-TEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             C-CCEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            8 77777776665444433  4444433 47889999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.5e-35  Score=245.75  Aligned_cols=284  Identities=12%  Similarity=0.147  Sum_probs=211.8

Q ss_pred             EEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCC
Q psy2305          17 LTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVG   96 (334)
Q Consensus        17 ~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~   96 (334)
                      +....++...+|+....+...           ....-...|.+.|++++|       +|+|++|++|+ |+.|+|||+.+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~~H~~~V~~l~f-------s~dg~~lasg~-d~~i~iW~~~~   92 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREID-----------VELHKSLDHTSVVCCVKF-------SNDGEYLATGC-NKTTQVYRVSD   92 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEE-----------EEEEEEEECSSCCCEEEE-------CTTSSEEEEEC-BSCEEEEETTT
T ss_pred             cccCCCCcEEEeCCCCCccee-----------eeeEeeCCCCCcEEEEEE-------CCCCCEEEEEe-CCeEEEEEecc
Confidence            456678889999976554321           000111247788988887       77999999987 89999999999


Q ss_pred             CeeeEEEcCcccc-------------ccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccceE
Q psy2305          97 GEIKATYRPYNQV-------------DEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVS  162 (334)
Q Consensus        97 ~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~  162 (334)
                      ++.+..+..+...             .+...|++++|+|++++|++|+ ||.|++||... ++...    ...+|...|.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~-~~~~~----~~~~h~~~v~  167 (388)
T d1erja_          93 GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN-RKIVM----ILQGHEQDIY  167 (388)
T ss_dssp             CCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEE----EECCCSSCEE
T ss_pred             cceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccccccccc-ccccc----cccccccccc
Confidence            9887776543211             1122699999999999999988 99999999986 44444    5678999999


Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeec
Q psy2305         163 AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP  242 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~  242 (334)
                      ++.+++++. .+++++.++.+++||.++.........+...+....+.+++++|++++ .|+.|++||.++ +.....+.
T Consensus       168 ~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~-~~~~~~~~  244 (388)
T d1erja_         168 SLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS-LDRAVRVWDSET-GFLVERLD  244 (388)
T ss_dssp             EEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEE-TTSCEEEEETTT-CCEEEEEC
T ss_pred             ccccccccc-cccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEc-CCCeEEEeeccc-Cccceeec
Confidence            999999999 999999999999999998887777765555444444455889999999 899999999987 55444443


Q ss_pred             cc-----ccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccc
Q psy2305         243 RQ-----VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERD  317 (334)
Q Consensus       243 ~~-----~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~  317 (334)
                      ..     .+...+.+++|+|++++|++++.||.|++||+..+....................|...|.+++|  +|++  
T Consensus       245 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~--  320 (388)
T d1erja_         245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT--TQND--  320 (388)
T ss_dssp             ------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE--CGGG--
T ss_pred             cccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEE--CCCC--
Confidence            21     13567889999999999999999999999999876543222222222344556678889999999  9999  


Q ss_pred             ceeeEEeeecceeeee
Q psy2305         318 LLVADATCSGQITNVK  333 (334)
Q Consensus       318 ~~~~l~t~~~d~~i~~  333 (334)
                        ++|++|+.||.|++
T Consensus       321 --~~l~sg~~dg~i~v  334 (388)
T d1erja_         321 --EYILSGSKDRGVLF  334 (388)
T ss_dssp             --CEEEEEETTSEEEE
T ss_pred             --CEEEEEeCCCEEEE
Confidence              99999999999875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-34  Score=235.86  Aligned_cols=243  Identities=17%  Similarity=0.231  Sum_probs=213.5

Q ss_pred             ceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEE
Q psy2305          50 NYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYA  129 (334)
Q Consensus        50 ~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  129 (334)
                      ...+++ |.+.|++++|       +|++++|++|+.||+|+|||+.+++.+..+..|..     .|.+++|+|++.++++
T Consensus        10 ~~~L~G-H~~~I~~l~~-------sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~-----~V~~~~~~~~~~~~~~   76 (317)
T d1vyhc1          10 KYALSG-HRSPVTRVIF-------HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-----SVQDISFDHSGKLLAS   76 (317)
T ss_dssp             SCEEEC-CSSCEEEEEE-------CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS-----CEEEEEECTTSSEEEE
T ss_pred             cEEEcC-CCCCeEEEEE-------cCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC-----cEEEEeeecccccccc
Confidence            346665 6678999888       66999999999999999999999999999987655     8999999999999998


Q ss_pred             ee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEE
Q psy2305         130 GF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLE  208 (334)
Q Consensus       130 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~  208 (334)
                      +. ++.+.+|+... .....    ....|...+.++.++|+++ .+++++.|+.+++||+++++.+..+.+|...+.+++
T Consensus        77 ~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (317)
T d1vyhc1          77 CSADMTIKLWDFQG-FECIR----TMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR  150 (317)
T ss_dssp             EETTSCCCEEETTS-SCEEE----CCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             cccccccccccccc-ccccc----ccccccccceeeeccCCCc-eEEeeccCcceeEeecccceeeeEEccCCCcceeee
Confidence            87 89999999885 33333    5678899999999999999 999999999999999999999999999999999999


Q ss_pred             EccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCC--------------------CceEEeeecC
Q psy2305         209 FSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSC--------------------SNYLLSGNTN  268 (334)
Q Consensus       209 ~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------------------~~~l~~~~~d  268 (334)
                      |+|++++|++++ .|+.|++|++.. ......+..+  ...+..+.|+|+                    +.++++++.|
T Consensus       151 ~~~~~~~l~~~~-~d~~v~~~~~~~-~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  226 (317)
T d1vyhc1         151 PNQDGTLIASCS-NDQTVRVWVVAT-KECKAELREH--RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD  226 (317)
T ss_dssp             ECTTSSEEEEEE-TTSCEEEEETTT-CCEEEEECCC--SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred             cccCCCEEEEEe-CCCeEEEEeecc-ceeeEEEecC--CCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCC
Confidence            999999999999 899999999997 6666666654  445666666664                    3478899999


Q ss_pred             CcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         269 GDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       269 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +.|++||+.++            +++..+.+|...|.+++|  +|++    ++|++++.||.|++
T Consensus       227 ~~i~~~~~~~~------------~~~~~~~~~~~~v~~~~~--~~~~----~~l~s~~~dg~i~i  273 (317)
T d1vyhc1         227 KTIKMWDVSTG------------MCLMTLVGHDNWVRGVLF--HSGG----KFILSCADDKTLRV  273 (317)
T ss_dssp             SEEEEEETTTT------------EEEEEEECCSSCEEEEEE--CSSS----SCEEEEETTTEEEE
T ss_pred             CEEEEEECCCC------------cEEEEEeCCCCCEEEEEE--CCCC----CEEEEEECCCeEEE
Confidence            99999999998            788889999999999999  9999    99999999999875

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-34  Score=236.07  Aligned_cols=272  Identities=17%  Similarity=0.227  Sum_probs=201.5

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.|.+ +++++|++||||+.||+|+|||+.+++..              ..+.+ |...|.+++|+       |  ++|+
T Consensus        17 ~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~--------------~~~~~-h~~~V~~v~~~-------~--~~l~   71 (342)
T d2ovrb2          17 DHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCL--------------RTLVG-HTGGVWSSQMR-------D--NIII   71 (342)
T ss_dssp             TSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEE--------------EECCC-CSSCEEEEEEE-------T--TEEE
T ss_pred             CceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEE--------------EEEeC-CCCCEEEEEeC-------C--Cccc
Confidence            45654 46778999999999999999999998876              45554 56789988883       3  3899


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCcccccc---------------------------------ccceeEEEEcCCCCEEE
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDE---------------------------------VTHAYSLAFSLDGNKIY  128 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------------------------~~~v~~~~~~~~~~~l~  128 (334)
                      +++.|+.+++|+..................                                 ........+.+....++
T Consensus        72 s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d2ovrb2          72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV  151 (342)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEE
T ss_pred             cceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceee
Confidence            999999999999876655443322111000                                 00001122233444556


Q ss_pred             Eee-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEE
Q psy2305         129 AGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHL  207 (334)
Q Consensus       129 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~  207 (334)
                      .++ ++.+++||+.. .....    .+.+|...+..+.+  ++. ++++++.||.|++||++.++++..+.+|...+.++
T Consensus       152 ~~~~d~~i~~~d~~~-~~~~~----~~~~~~~~~~~~~~--~~~-~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~  223 (342)
T d2ovrb2         152 SGAYDFMVKVWDPET-ETCLH----TLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM  223 (342)
T ss_dssp             EEETTSCEEEEEGGG-TEEEE----EECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE
T ss_pred             eecCCCeEEEeeccc-ceeeE----EEcCcccccccccC--CCC-EEEEEeCCCeEEEeecccceeeeEecccccceeEE
Confidence            565 88999999875 33333    45667666655544  566 99999999999999999999999999999999888


Q ss_pred             EEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc-cCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCC
Q psy2305         208 EFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV-STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPY  286 (334)
Q Consensus       208 ~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  286 (334)
                      .+++  ++|++++ .|+.|++||+.. .+....+..+. +...+.++.+  +++++++++.||.|++||++++       
T Consensus       224 ~~~~--~~l~s~s-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg-------  290 (342)
T d2ovrb2         224 ELKD--NILVSGN-ADSTVKIWDIKT-GQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTG-------  290 (342)
T ss_dssp             EEET--TEEEEEE-TTSCEEEEETTT-CCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTC-------
T ss_pred             ecCC--CEEEEEc-CCCEEEEEeccc-ccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCC-------
Confidence            7764  5999999 899999999987 55555555432 2445555554  5679999999999999999998       


Q ss_pred             cccccccccee-----cccccccceeeeccCCCcccceeeEEeeeccee
Q psy2305         287 EESVQEPLYKF-----SAHQDCTNGVRWKHHKFERDLLVADATCSGQIT  330 (334)
Q Consensus       287 ~~~~~~~~~~~-----~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~  330 (334)
                           +.+..+     .+|...|++++|  +|++    .+||+|+.||+
T Consensus       291 -----~~i~~~~~~~~~~~~~~v~~v~~--s~~~----~~la~g~~dGt  328 (342)
T d2ovrb2         291 -----EFIRNLVTLESGGSGGVVWRIRA--SNTK----LVCAVGSRNGT  328 (342)
T ss_dssp             -----CEEEEEEECTTGGGTCEEEEEEE--CSSE----EEEEEECSSSS
T ss_pred             -----CEEEEEecccCCCCCCCEEEEEE--CCCC----CEEEEEeCCCC
Confidence                 455544     357778999999  9999    99999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-34  Score=229.44  Aligned_cols=275  Identities=16%  Similarity=0.209  Sum_probs=213.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|+|+  ++||++||+|+.||+|+|||+.+++..              ..+.+ |...|.+++|         ++++|+
T Consensus        16 ~~V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~~~--------------~~l~~-H~~~V~~v~~---------~~~~l~   69 (293)
T d1p22a2          16 KGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECK--------------RILTG-HTGSVLCLQY---------DERVII   69 (293)
T ss_dssp             CCEEEE--ECCSSEEEEEESSSCEEEEESSSCCEE--------------EEECC-CSSCEEEEEC---------CSSEEE
T ss_pred             CCEEEE--EEcCCEEEEEeCCCeEEEEECCCCcEE--------------EEEec-CCCCEeeeec---------ccceee
Confidence            356765  458999999999999999999998876              45554 5678888766         678999


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      +|+.|+.|++|++..+...........       ....+.+....++++. ++.+.+|+...........  ....|...
T Consensus        70 s~s~D~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  140 (293)
T d1p22a2          70 TGSSDSTVRVWDVNTGEMLNTLIHHCE-------AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR--VLVGHRAA  140 (293)
T ss_dssp             EEETTSCEEEEESSSCCEEEEECCCCS-------CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEE--EECCCSSC
T ss_pred             ccccccccccccccccccccccccccc-------ccccccccccceeecccccceeEeeccccccccccc--cccccccc
Confidence            999999999999998887766654332       2334555556677665 9999999998633222211  45678888


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT  240 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~  240 (334)
                      +..+.+.+.   .+++++.|+.|++||+++++.+..+.++...+..+.++  +.++++++ .|+.|++||+++ ...+..
T Consensus       141 v~~~~~~~~---~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~i~d~~~-~~~~~~  213 (293)
T d1p22a2         141 VNVVDFDDK---YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIEC-GACLRV  213 (293)
T ss_dssp             EEEEEEETT---EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTT-CCEEEE
T ss_pred             cccceeccc---ccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEec-CCCEEEEEeccc-ceeeee
Confidence            888887765   78889999999999999999999999999998888775  56899999 899999999997 666666


Q ss_pred             ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCccccee
Q psy2305         241 FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV  320 (334)
Q Consensus       241 ~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~  320 (334)
                      +..+  ...+.  .+++++.+|++++.||.|++||+........+   .....+..+.+|.+.|++++|    ++    .
T Consensus       214 ~~~~--~~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~H~~~V~~v~~----d~----~  278 (293)
T d1p22a2         214 LEGH--EELVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP---AGTLCLRTLVEHSGRVFRLQF----DE----F  278 (293)
T ss_dssp             ECCC--SSCEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSC---TTTTEEEEECCCSSCCCCEEE----CS----S
T ss_pred             eccc--ceeee--eccccceEEEEEcCCCEEEEEECCCCcccccc---CCceeeEEecCCCCCEEEEEE----cC----C
Confidence            6654  33343  35688899999999999999998764322111   112456778899999999999    56    7


Q ss_pred             eEEeeecceeeee
Q psy2305         321 ADATCSGQITNVK  333 (334)
Q Consensus       321 ~l~t~~~d~~i~~  333 (334)
                      +|+++|.||+|++
T Consensus       279 ~l~s~s~Dg~i~i  291 (293)
T d1p22a2         279 QIVSSSHDDTILI  291 (293)
T ss_dssp             CEEECCSSSEEEE
T ss_pred             EEEEEecCCEEEE
Confidence            7999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-34  Score=246.33  Aligned_cols=283  Identities=13%  Similarity=0.119  Sum_probs=194.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeee-eeeceeEEEEEEeccccee-cCCCcE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLK-IKEGGIIYDYVWYPKTSSI-DGFTSY   79 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-s~~~~~   79 (334)
                      +.|.++++++  ++|++++.|++|+|||..+.....         + ...... ..+...+..+.... .+.. ..++.+
T Consensus        15 ~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   81 (393)
T d1sq9a_          15 ADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN---------P-KDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCL   81 (393)
T ss_dssp             SCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC---------G-GGGEEEEECCTTCEEEEEEEE-EEETTTEEEEE
T ss_pred             CccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc---------c-cceeEeeeeccCCceEeeeEe-eeccCCCCCcE
Confidence            5689999875  689999999999999987654321         0 001111 11111222222111 0111 123456


Q ss_pred             EEEeeCCCcEEEEeCCCCeee-----EEEcCccccccccceeEEEEcCCC-----CEEEEee-CCcEEEEEcCCCCCee-
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIK-----ATYRPYNQVDEVTHAYSLAFSLDG-----NKIYAGF-LSEVKIFSTDRPGREC-  147 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~-d~~i~i~d~~~~~~~~-  147 (334)
                      +++++.||.|++|++......     ..............+..++|.++.     .++++++ |+.+++|++....... 
T Consensus        82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  161 (393)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence            889999999999987543211     112221111222367788888763     5677666 9999999986421110 


Q ss_pred             ------------eeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee------ccCCCCeEEEEE
Q psy2305         148 ------------VSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL------KGHNGGITHLEF  209 (334)
Q Consensus       148 ------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~i~~~~~  209 (334)
                                  .........+...+.+++|+|++  +|++|+.|++|++||+++++++..+      .+|..+|.+++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             eeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccc
Confidence                        00000223455668899999997  7899999999999999988776544      568899999999


Q ss_pred             ccCCcEEEeeecCCC---eEEEEEccCCCccceeecc-----------cccCCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305         210 SSNGILLFSGARKDC---EIICWDLRNPGCILHTFPR-----------QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN  275 (334)
Q Consensus       210 ~~~~~~l~~~~~~d~---~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  275 (334)
                      +|+|++|++++ .|+   .|++||+++ +..+..+..           ..+...|.+++|+|++++|++++.|++|++||
T Consensus       240 spdg~~l~sgs-~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         240 SPQGSLLAIAH-DSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             CSSTTEEEEEE-EETTEEEEEEEETTT-CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccccceeeeec-CCCCcceeeeccccc-ceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            99999999999 776   499999987 655555531           12366799999999999999999999999999


Q ss_pred             CCCCCCCCCCCccccccccceecccccccc----eeeeccCCCc
Q psy2305         276 VNTSNLPSSPYEESVQEPLYKFSAHQDCTN----GVRWKHHKFE  315 (334)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~s~~~  315 (334)
                      ++++            +++..+.+|.+.|.    .++|  +|++
T Consensus       318 ~~~g------------~~~~~l~gH~~~v~~~~~~~~~--~~~~  347 (393)
T d1sq9a_         318 VKTK------------ERITTLNMHCDDIEIEEDILAV--DEHG  347 (393)
T ss_dssp             TTTT------------EEEEEEECCGGGCSSGGGCCCB--CTTS
T ss_pred             CCCC------------CEEEEECCcCCcccCCccEEEE--CCCC
Confidence            9998            78888888887664    3666  6666

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-33  Score=230.77  Aligned_cols=245  Identities=11%  Similarity=0.097  Sum_probs=191.9

Q ss_pred             eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305          51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG  130 (334)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (334)
                      +.+.+ |...|++++|       +|++++|++|+.||.|++||+++++....+.. .|..   .|++++|+|++++++++
T Consensus         6 ~~~~G-H~~~V~~l~~-------s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~h~~---~v~~v~~~~~g~~~~~~   73 (299)
T d1nr0a2           6 QVRYG-HNKAITALSS-------SADGKTLFSADAEGHINSWDISTGISNRVFPD-VHAT---MITGIKTTSKGDLFTVS   73 (299)
T ss_dssp             EEECC-CSSCEEEEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEECSSC-SCSS---CEEEEEECTTSCEEEEE
T ss_pred             eEcCC-CCCCcEEEEE-------CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCC---cEEEEEeeccceeeccc
Confidence            44554 6688999888       67999999999999999999999988876642 2222   89999999999887777


Q ss_pred             eCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEc
Q psy2305         131 FLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFS  210 (334)
Q Consensus       131 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  210 (334)
                      .|+.+++|+.....  ..........+...+.+++|+|++. +++++ .++.+.+|+...  .....  ....+.+++|+
T Consensus        74 ~d~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~-~~~~~-~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s  145 (299)
T d1nr0a2          74 WDDHLKVVPAGGSG--VDSSKAVANKLSSQPLGLAVSADGD-IAVAA-CYKHIAIYSHGK--LTEVP--ISYNSSCVALS  145 (299)
T ss_dssp             TTTEEEEECSSSSS--SCTTSCCEEECSSCEEEEEECTTSS-CEEEE-ESSEEEEEETTE--EEEEE--CSSCEEEEEEC
T ss_pred             ceeeEEEeccCCcc--ccccccccccccccccccccccccc-ccccc-cccccccccccc--ccccc--ccccccccccc
Confidence            79999999987422  1111112345677899999999998 66654 567899999532  22222  34467899999


Q ss_pred             cCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccc
Q psy2305         211 SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESV  290 (334)
Q Consensus       211 ~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  290 (334)
                      |++++|++++ .|+.|++||++. +... ......+...+.+++|+|++++|++++.|+.|++||+.++...        
T Consensus       146 ~~~~~l~~g~-~dg~i~~~d~~~-~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--------  214 (299)
T d1nr0a2         146 NDKQFVAVGG-QDSKVHVYKLSG-ASVS-EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL--------  214 (299)
T ss_dssp             TTSCEEEEEE-TTSEEEEEEEET-TEEE-EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE--------
T ss_pred             cccccccccc-cccccccccccc-cccc-ccccccccccccccccccccccccccccccccccccccccccc--------
Confidence            9999999999 899999999986 3322 2222224677899999999999999999999999999876432        


Q ss_pred             ccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         291 QEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       291 ~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                       .....+.+|...|++++|  +|++    ++|++|+.||.+++
T Consensus       215 -~~~~~~~~h~~~v~~l~~--s~~~----~~l~sgs~dg~i~i  250 (299)
T d1nr0a2         215 -AHTNSWTFHTAKVACVSW--SPDN----VRLATGSLDNSVIV  250 (299)
T ss_dssp             -SCCCCCCCCSSCEEEEEE--CTTS----SEEEEEETTSCEEE
T ss_pred             -cccccccccccccccccc--cccc----cceEEEcCCCEEEE
Confidence             445567788999999999  9999    99999999999875

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-33  Score=232.73  Aligned_cols=288  Identities=11%  Similarity=0.072  Sum_probs=205.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      |.|++|+|+|++++||+|+.||+|+|||+.......            .......|..+|.+++|+|      +++.+|+
T Consensus        12 d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~------------~~~~~~~h~~~V~~v~f~~------~~~~~l~   73 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV------------DLLQSLRYKHPLLCCNFID------NTDLQIY   73 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE------------EEEEEEECSSCEEEEEEEE------SSSEEEE
T ss_pred             CCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce------------EEEEecCCCCCEEEEEEeC------CCCCEEE
Confidence            679999999999999999999999999998765431            0122234778999999954      2466899


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeee-ccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSR-NLKPWFRKN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~-~~~~~~~~~  159 (334)
                      +|+.|+.|++|++..+........+...    ......+.++...+++++ ++.+++||++......... .........
T Consensus        74 sg~~d~~v~~w~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~  149 (342)
T d1yfqa_          74 VGTVQGEILKVDLIGSPSFQALTNNEAN----LGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV  149 (342)
T ss_dssp             EEETTSCEEEECSSSSSSEEECBSCCCC----SCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred             Ecccccceeeeecccccccccccccccc----cccccccccccccccccccccccceeeccccccceeeecccccccccc
Confidence            9999999999999887776665543321    334556667777888776 9999999987522221110 001112233


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe---eccCCCCeEEEEEcc-CCcEEEeeecCCCeEEEEEccCCC
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF---LKGHNGGITHLEFSS-NGILLFSGARKDCEIICWDLRNPG  235 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~i~~~~~~~-~~~~l~~~~~~d~~i~iwd~~~~~  235 (334)
                      ....+.+.+.+. .+++++.|+.|++||++..+....   ...+...+.+..+.+ ++..+++++ .||.+.+|++....
T Consensus       150 ~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~v~~~~~~~  227 (342)
T d1yfqa_         150 KNKIFTMDTNSS-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-IDGRVAVEFFDDQG  227 (342)
T ss_dssp             CCCEEEEEECSS-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-TTSEEEEEECCTTC
T ss_pred             eeeeeeeeccCC-ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec-CCCeEEEEEecCCc
Confidence            445667778888 999999999999999987654333   233444556655554 677889999 89999999987522


Q ss_pred             ccc-----eee-------cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccc
Q psy2305         236 CIL-----HTF-------PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDC  303 (334)
Q Consensus       236 ~~~-----~~~-------~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (334)
                      ...     ..+       ....+...+.+++|+|++++|++|+.||.|++||++++            +.+..+..+ ..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~------------~~l~~~~~~-~~  294 (342)
T d1yfqa_         228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR------------KKIKNFAKF-NE  294 (342)
T ss_dssp             CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT------------EEEEECCCC-SS
T ss_pred             ceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC------------cEEEEecCC-CC
Confidence            111     001       01112345778999999999999999999999999997            566666543 34


Q ss_pred             cceeeeccCCCcccceeeEEeeecceeee
Q psy2305         304 TNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       304 i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      +..++|  +|++    ++|++++.|+.++
T Consensus       295 ~~~~~~--s~~~----~~l~~a~sdd~~~  317 (342)
T d1yfqa_         295 DSVVKI--ACSD----NILCLATSDDTFK  317 (342)
T ss_dssp             SEEEEE--EECS----SEEEEEEECTHHH
T ss_pred             CEEEEE--EeCC----CEEEEEEcCCcEE
Confidence            556788  8899    8999998887654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=229.14  Aligned_cols=258  Identities=14%  Similarity=0.138  Sum_probs=198.9

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ++|++++|+|    |++|+.||+|++||+.++..                    .|...|.++.+       +++ ..++
T Consensus        14 ~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~--------------------~h~~~V~~~~~-------~~~-~~~~   61 (287)
T d1pgua2          14 KGITALTVNP----LISGSYDGRIMEWSSSSMHQ--------------------DHSNLIVSLDN-------SKA-QEYS   61 (287)
T ss_dssp             SCEEEEETTT----TEEEETTSCEEETTTTEEEC--------------------CCCSCEEEEEC-------CST-TCCE
T ss_pred             CceEEEEECc----EEEEeCCCeEEEEECCCCCC--------------------CCCCCEEEEEe-------cCC-CeEE
Confidence            5799999998    99999999999999865432                    35677888776       444 4578


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      +++.|+++++|++...+    +   ..     .+..+.+++++..++++.++.+.+|+... +.....    .. +... 
T Consensus        62 s~s~D~~v~~w~~~~~~----~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~-~~~~-  122 (287)
T d1pgua2          62 SISWDDTLKVNGITKHE----F---GS-----QPKVASANNDGFTAVLTNDDDLLILQSFT-GDIIKS----VR-LNSP-  122 (287)
T ss_dssp             EEETTTEEEETTEEEEE----C---SS-----CEEEEEECSSSEEEEEETTSEEEEEETTT-CCEEEE----EE-CSSC-
T ss_pred             EEeeccccccccccccc----c---cc-----ceeeeeeccCCceEEEeecccceeeeccc-eeeeee----cc-ccce-
Confidence            99999999999864321    1   12     56788999999888888888899999886 444432    22 2233 


Q ss_pred             EEEEEcCCCCcEEEEeecC-CeEEEEECCCCCceEee-ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccce
Q psy2305         162 SAIAINPVHPDICALGTYS-KIIGLFSDSDGRPLFFL-KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILH  239 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~  239 (334)
                       ..++++++. .+++++.+ +.+++|++...+....+ ..|...+++++|+|++++|++++ .||.|++||+........
T Consensus       123 -~~~~~~~~~-~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         123 -GSAVSLSQN-YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD-VMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             -EEEEEECSS-EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEC
T ss_pred             -eeeeeccCc-ceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc-ccccccceeecccccccc
Confidence             345667777 77777766 47999999776655554 34778899999999999999999 899999999987322223


Q ss_pred             eecccccCCceEEEEecCC----------CceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeee
Q psy2305         240 TFPRQVSTNQRVYFDLTSC----------SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRW  309 (334)
Q Consensus       240 ~~~~~~~~~~~~~~~~s~~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  309 (334)
                      .+..|  ...+.+++|+|.          +.+|++|+.|++|++||++...           +.+..+.+|.+.|++++|
T Consensus       200 ~~~~h--~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~-----------~~~~~~~~h~~~V~~v~~  266 (287)
T d1pgua2         200 RWAFR--TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-----------KIIKALNAHKDGVNNLLW  266 (287)
T ss_dssp             CSCCC--SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-----------CCEEETTSSTTCEEEEEE
T ss_pred             ccccc--ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC-----------eEEEEeCCCCCCeEEEEE
Confidence            34444  567888888874          4689999999999999998752           566777899999999999


Q ss_pred             ccCCCcccceeeEEeeecceeeee
Q psy2305         310 KHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       310 ~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                        +|++    . |+++|.|+.|++
T Consensus       267 --~~~~----~-l~s~g~D~~v~i  283 (287)
T d1pgua2         267 --ETPS----T-LVSSGADACIKR  283 (287)
T ss_dssp             --EETT----E-EEEEETTSCEEE
T ss_pred             --CCCC----E-EEEEECCCeEEE
Confidence              9987    5 889999999975

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-31  Score=221.15  Aligned_cols=240  Identities=20%  Similarity=0.219  Sum_probs=195.2

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .+|.+++|+|+++++++|+.|+.+++|+........          .....+.. +.........        ..+..+.
T Consensus        98 ~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~--------~~~~~~~  158 (340)
T d1tbga_          98 SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV----------RVSRELAG-HTGYLSCCRF--------LDDNQIV  158 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCC----------CEEEEECC-CSSCEEEEEE--------EETTEEE
T ss_pred             ccEEeeEeeccceeeeeecccceeeccccccccccc----------ccceeccc-cccccccccc--------ccccccc
Confidence            469999999999999999999999999987655331          00112222 2233332222        2445677


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNI  160 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  160 (334)
                      ....+.....+................     .+....+.+.+.+++++. |+.|++||+++ ++...    .+.+|...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~-~~~~~----~~~~h~~~  228 (340)
T d1tbga_         159 TSSGDTTCALWDIETGQQTTTFTGHTG-----DVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQ----TFTGHESD  228 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECCSS-----CEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEE----EECCCSSC
T ss_pred             cccccccccccccccccccccccccce-----eEeeeccccccceeEEeecCceEEEEECCC-CcEEE----EEeCCCCC
Confidence            788888999998877766655554443     788999999999999887 99999999986 55544    57789999


Q ss_pred             eEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee--ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccc
Q psy2305         161 VSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       161 v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      |++++|+|+++ +|++|+.|+.|++||++..+....+  ..+...|.+++|+|++++|++++ .||.|++||+.+ ++.+
T Consensus       229 i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~i~iwd~~~-~~~~  305 (340)
T d1tbga_         229 INAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALK-ADRA  305 (340)
T ss_dssp             EEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEE-TTSCEEEEETTT-CCEE
T ss_pred             eEEEEECCCCC-EEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEE-CCCEEEEEECCC-CcEE
Confidence            99999999999 9999999999999999988776655  45667899999999999999999 899999999998 7788


Q ss_pred             eeecccccCCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305         239 HTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWN  275 (334)
Q Consensus       239 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  275 (334)
                      ..+.+|  ...+.+++|+|++++|++|+.||.|+|||
T Consensus       306 ~~~~~H--~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         306 GVLAGH--DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECCC--SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEcCC--CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            888877  56799999999999999999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.98  E-value=2.1e-31  Score=222.52  Aligned_cols=271  Identities=13%  Similarity=0.069  Sum_probs=198.7

Q ss_pred             CceeEEEEcC-CCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAP-DGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      ..+..-.||| ||+++|+++. |.|++|+..++...                 ...|...|.+++|       +|||++|
T Consensus         3 ~~~~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~-----------------~~~~~~~v~~~~~-------spDg~~l   57 (360)
T d1k32a3           3 PSKFAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVL-----------------KVPEPLRIRYVRR-------GGDTKVA   57 (360)
T ss_dssp             GGGGEEEEEECGGGCEEEEET-TEEEEECTTSSBEE-----------------ECSCCSCEEEEEE-------CSSSEEE
T ss_pred             chhhcccccCCCCCEEEEEEC-CeEEEEECCCCcEE-----------------EccCCCCEEEEEE-------CCCCCEE
Confidence            4566788999 9999999864 79999999887654                 2246778988888       7799999


Q ss_pred             EEeeCCC--cEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          81 LCSSMYA--PIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        81 ~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                      ++++.+.  .|++||+.+++... +..+..     .+.+++|+|++++|++++ ++.+++|++.. ++...    ....|
T Consensus        58 ~~~~~~~g~~v~v~d~~~~~~~~-~~~~~~-----~v~~~~~spdg~~l~~~~~~~~~~~~~~~~-~~~~~----~~~~~  126 (360)
T d1k32a3          58 FIHGTREGDFLGIYDYRTGKAEK-FEENLG-----NVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTV----IERSR  126 (360)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEE-CCCCCC-----SEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEE----EEECS
T ss_pred             EEEEcCCCCEEEEEECCCCcEEE-eeCCCc-----eEEeeeecccccccceeccccccccccccc-cceee----eeecc
Confidence            8776553  79999998876554 443333     899999999999999887 99999999986 44443    46678


Q ss_pred             ccceEEEEEcCCCCcEEEEe----------ecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEE
Q psy2305         158 KNIVSAIAINPVHPDICALG----------TYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEII  227 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~  227 (334)
                      ...+.+++|+|+|+ +|+.+          ..++.+++||+.+++... +..+...+..++|+|+|++|++++ .++.+.
T Consensus       127 ~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s-~~~~~~  203 (360)
T d1k32a3         127 EAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLS-YRSLDP  203 (360)
T ss_dssp             SSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEE-SCCCCC
T ss_pred             cccccchhhcccee-eeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEe-CCCceE
Confidence            88899999999999 87754          344579999998776544 445777889999999999999999 899999


Q ss_pred             EEEccCCCc------cceeecc----------------------------------cccCCceEEEEecCC---------
Q psy2305         228 CWDLRNPGC------ILHTFPR----------------------------------QVSTNQRVYFDLTSC---------  258 (334)
Q Consensus       228 iwd~~~~~~------~~~~~~~----------------------------------~~~~~~~~~~~~s~~---------  258 (334)
                      +||......      ....+..                                  .........+...++         
T Consensus       204 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (360)
T d1k32a3         204 SPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPV  283 (360)
T ss_dssp             EECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCC
T ss_pred             cccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEe
Confidence            998643110      0000000                                  000111122222222         


Q ss_pred             ----CceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         259 ----SNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       259 ----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                          +.++++++.++.|++||+.++            + .   ..|.+.|.+++|  +|||    ++|++++.||.|++
T Consensus       284 ~~~~~~~~~~~~~~~~i~~~d~~~~------------~-~---~~~~~~v~~~~~--SpDG----~~l~~~~~Dg~i~v  340 (360)
T d1k32a3         284 HGEFAAYYQGAPEKGVLLKYDVKTR------------K-V---TEVKNNLTDLRL--SADR----KTVMVRKDDGKIYT  340 (360)
T ss_dssp             CCSHHHHHHCCCCCEEEEEEETTTC------------C-E---EEEEEEEEEEEE--CTTS----CEEEEEETTSCEEE
T ss_pred             cCCCeeEEEecCCCCEEEEEECCCC------------e-E---EEecCCcCEEEE--CCCC----CEEEEEECCCeEEE
Confidence                224555667889999999885            2 2   234456899999  9999    99999999999875

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-29  Score=209.92  Aligned_cols=238  Identities=14%  Similarity=0.180  Sum_probs=185.1

Q ss_pred             eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305          51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG  130 (334)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (334)
                      .++++|....+.++.+         ++++|++|+.||+|++||+.+++.+..+..|..     .|++++|+|++ +|+++
T Consensus         6 ~tL~GH~~~vitc~~~---------~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~-----~V~~l~~s~~~-~l~s~   70 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF---------EDNYVITGADDKMIRVYDSINKKFLLQLSGHDG-----GVWALKYAHGG-ILVSG   70 (355)
T ss_dssp             EEEECCSSSCEEEEEE---------ETTEEEEEETTTEEEEEETTTTEEEEEEECCSS-----CEEEEEEETTT-EEEEE
T ss_pred             EEECCcCCCcEEEEEE---------CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC-----CEEEEEEcCCC-EEEEE
Confidence            4567666555666555         678999999999999999999999999987665     89999999865 67777


Q ss_pred             e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee------------
Q psy2305         131 F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL------------  197 (334)
Q Consensus       131 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------  197 (334)
                      + |+.|++|++.. .......  ....+........+.+++. .+++++.|+.|++||+++.......            
T Consensus        71 s~D~~i~iw~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d1nexb2          71 STDRTVRVWDIKK-GCCTHVF--EGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT  146 (355)
T ss_dssp             ETTCCEEEEETTT-TEEEEEE--CCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------CCCEEESC
T ss_pred             ecccccccccccc-ccccccc--ccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccccceeccceec
Confidence            6 99999999986 3333221  2333444556777888888 9999999999999999775433221            


Q ss_pred             -----------ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeee
Q psy2305         198 -----------KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN  266 (334)
Q Consensus       198 -----------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~  266 (334)
                                 ..|...+  ..+.+++++++++. .|+.+++||+++ ++.+.....+  .....++.++|++.++++++
T Consensus       147 ~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~-~d~~i~~~d~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  220 (355)
T d1nexb2         147 PEENPYFVGVLRGHMASV--RTVSGHGNIVVSGS-YDNTLIVWDVAQ-MKCLYILSGH--TDRIYSTIYDHERKRCISAS  220 (355)
T ss_dssp             TTTCTTEEEEEECCSSCE--EEEEEETTEEEEEE-TTSCEEEEETTT-TEEEEEECCC--SSCEEEEEEETTTTEEEEEE
T ss_pred             cccccceeeeeeeccccc--cccccccceeeeec-ccceeeeeeccc-ccceeeeecc--ccccccccccccceeeeccc
Confidence                       1222333  34556788999999 899999999987 6666666554  55677888999999999999


Q ss_pred             cCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         267 TNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       267 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .|+.|++||+.++            ..+..+.+|...|.+++|  +  +    ++|++++.||.|++
T Consensus       221 ~d~~i~i~d~~~~------------~~~~~~~~h~~~v~~~~~--~--~----~~l~~~~~dg~i~i  267 (355)
T d1nexb2         221 MDTTIRIWDLENG------------ELMYTLQGHTALVGLLRL--S--D----KFLVSAAADGSIRG  267 (355)
T ss_dssp             TTSCEEEEETTTC------------CEEEEECCCSSCCCEEEE--C--S----SEEEEECTTSEEEE
T ss_pred             ccceEEeeecccc------------cccccccccccccccccc--c--c----ceeeeeeccccccc
Confidence            9999999999998            778889999999999999  5  5    67999999999875

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-28  Score=199.47  Aligned_cols=227  Identities=16%  Similarity=0.137  Sum_probs=175.7

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      ..|.++++++++ .+++++.|+++++|++...+.                      ...+..+.+       ++++..++
T Consensus        47 ~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~----------------------~~~~~~~~~-------~~~~~~~~   96 (287)
T d1pgua2          47 NLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEF----------------------GSQPKVASA-------NNDGFTAV   96 (287)
T ss_dssp             SCEEEEECCSTT-CCEEEETTTEEEETTEEEEEC----------------------SSCEEEEEE-------CSSSEEEE
T ss_pred             CCEEEEEecCCC-eEEEEeecccccccccccccc----------------------ccceeeeee-------ccCCceEE
Confidence            468899999765 578999999999998754332                      122334444       66777666


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-CcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-SEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      ++. ++.+.+|+..+++....+....        ...++++++..++++. + +.+++|++.. ......   ....|..
T Consensus        97 ~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~v~~~~~~~-~~~~~~---~~~~~~~  163 (287)
T d1pgua2          97 LTN-DDDLLILQSFTGDIIKSVRLNS--------PGSAVSLSQNYVAVGLEEGNTIQVFKLSD-LEVSFD---LKTPLRA  163 (287)
T ss_dssp             EET-TSEEEEEETTTCCEEEEEECSS--------CEEEEEECSSEEEEEETTTSCEEEEETTE-EEEEEE---CSSCCSS
T ss_pred             Eee-cccceeeeccceeeeeeccccc--------eeeeeeccCcceeeeccccceeeeeeccc-cceeee---eeeccCC
Confidence            654 5668899999988887776432        2456778888888765 4 6799999874 222222   3456778


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE-eeccCCCCeEEEEEccC----------CcEEEeeecCCCeEEE
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF-FLKGHNGGITHLEFSSN----------GILLFSGARKDCEIIC  228 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~----------~~~l~~~~~~d~~i~i  228 (334)
                      .+++++|+|++. +|++|+.||.|++||+.+++... .+.+|...|.+++|+|.          +.+|++++ .|++|++
T Consensus       164 ~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs-~D~~i~i  241 (287)
T d1pgua2         164 KPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS-LDTNIFI  241 (287)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE-TTSCEEE
T ss_pred             ceeEEEeccCcc-ccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeec-CCCeEEE
Confidence            899999999999 99999999999999998887654 46789999999999875          46899999 8999999


Q ss_pred             EEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeC
Q psy2305         229 WDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNV  276 (334)
Q Consensus       229 wd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~  276 (334)
                      ||++.....+..+.+|  ...+.+++|+|++ .|++++.|+.|++|++
T Consensus       242 w~~~~~~~~~~~~~~h--~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         242 YSVKRPMKIIKALNAH--KDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EESSCTTCCEEETTSS--TTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EECCCCCeEEEEeCCC--CCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            9998756666666665  6678999999987 5788999999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.3e-28  Score=205.27  Aligned_cols=240  Identities=16%  Similarity=0.159  Sum_probs=167.2

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEE
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLW   92 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iw   92 (334)
                      +.++++++.||.|++|++................     .....+...+..++|.+..  ..+.+.++++++.||.+++|
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~dg~i~vw  151 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDL-----LDSDMKKHSFWALKWGASN--DRLLSHRLVATDVKGTTYIW  151 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECC-----SCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEE
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccce-----eeeccCCCceEEEEEecCC--CcccccEEEEEcCCCcEEEE
Confidence            4578899999999999986554321110000000     0001123456667775421  12346789999999999999


Q ss_pred             eCCCCe---------------eeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeec--ccc
Q psy2305          93 DSVGGE---------------IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRN--LKP  154 (334)
Q Consensus        93 d~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~--~~~  154 (334)
                      ++....               .......  .......+.+++|+|++ +|++|+ |++|++||+.+ ++.+....  ..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~-~~~~~~~~~~~~l  227 (393)
T d1sq9a_         152 KFHPFADESNSLTLNWSPTLELQGTVES--PMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSM  227 (393)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEEEEECC--SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC--
T ss_pred             EeecCCcccceeeeeeccceecccceec--ccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc-ccccccccccccc
Confidence            974211               1111111  11222268899999998 788887 99999999987 54443221  135


Q ss_pred             cccccceEEEEEcCCCCcEEEEeecCC---eEEEEECCCCCceEeec-------------cCCCCeEEEEEccCCcEEEe
Q psy2305         155 WFRKNIVSAIAINPVHPDICALGTYSK---IIGLFSDSDGRPLFFLK-------------GHNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       155 ~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~  218 (334)
                      .+|..+|++++|+|+|+ +|++|+.|+   .|++||+++++.+..+.             +|.+.|++++|+|++++|++
T Consensus       228 ~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S  306 (393)
T d1sq9a_         228 INNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  306 (393)
T ss_dssp             -CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             ccccceEEEcccccccc-eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE
Confidence            67999999999999999 999999886   59999999988777663             79999999999999999999


Q ss_pred             eecCCCeEEEEEccCCCccceeecccccCCc--eEEEEecCCCceEEeee
Q psy2305         219 GARKDCEIICWDLRNPGCILHTFPRQVSTNQ--RVYFDLTSCSNYLLSGN  266 (334)
Q Consensus       219 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~l~~~~  266 (334)
                      ++ .|++|++||+++ ++++..+.+|.....  ...++|+|++..+++++
T Consensus       307 ~s-~D~~v~vWd~~~-g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         307 AG-WDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EE-TTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             EC-CCCEEEEEECCC-CCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            99 899999999998 888899988754332  22466888888776554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-28  Score=200.21  Aligned_cols=238  Identities=19%  Similarity=0.246  Sum_probs=172.4

Q ss_pred             eeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe
Q psy2305          51 YTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG  130 (334)
Q Consensus        51 ~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (334)
                      ..+++|....+.++.         ++|++|++|+.||+|+|||+.+++++..+..|..     .|.+++|+|+  +|+++
T Consensus        10 ~~l~GH~~~V~s~~~---------~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~-----~V~~v~~~~~--~l~s~   73 (342)
T d2ovrb2          10 KVLKGHDDHVITCLQ---------FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG-----GVWSSQMRDN--IIISG   73 (342)
T ss_dssp             EEEECSTTSCEEEEE---------EETTEEEEEETTSCEEEEETTTCCEEEECCCCSS-----CEEEEEEETT--EEEEE
T ss_pred             EEECCcCCceEEEEE---------ECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC-----CEEEEEeCCC--ccccc
Confidence            567764444334433         3788999999999999999999999999987655     8999999975  78888


Q ss_pred             e-CCcEEEEEcCCCCCeeeeecc-----------------------c-ccc---------cccceEEEEEcCCCCcEEEE
Q psy2305         131 F-LSEVKIFSTDRPGRECVSRNL-----------------------K-PWF---------RKNIVSAIAINPVHPDICAL  176 (334)
Q Consensus       131 ~-d~~i~i~d~~~~~~~~~~~~~-----------------------~-~~~---------~~~~v~~~~~~~~~~~~l~~  176 (334)
                      + |+.+++|+.............                       . ...         ...........+... .+++
T Consensus        74 s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  152 (342)
T d2ovrb2          74 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR-RVVS  152 (342)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSS-CEEE
T ss_pred             eecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccc-eeee
Confidence            7 999999998752111110000                       0 000         000011122333444 6888


Q ss_pred             eecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEec
Q psy2305         177 GTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLT  256 (334)
Q Consensus       177 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s  256 (334)
                      ++.|+.|++||.+..+.+..+.+|...+..+  ++++.+|++++ .|+.|++||++. .+.+..+..|  ...+.++.+ 
T Consensus       153 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~-~dg~i~~~d~~~-~~~~~~~~~~--~~~v~~~~~-  225 (342)
T d2ovrb2         153 GAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGS-LDTSIRVWDVET-GNCIHTLTGH--QSLTSGMEL-  225 (342)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEE-TTSCEEEEETTT-CCEEEEECCC--CSCEEEEEE-
T ss_pred             ecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEe-CCCeEEEeeccc-ceeeeEeccc--ccceeEEec-
Confidence            8999999999999998889998888776555  45788999999 899999999997 6777777765  455666655 


Q ss_pred             CCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceec---ccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         257 SCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS---AHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       257 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                       ++++|++++.|+.|++||+...            +....+.   .|...+..+.+    ++    +++++|+.||+|++
T Consensus       226 -~~~~l~s~s~d~~i~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~----~~----~~~~s~s~Dg~i~i  284 (342)
T d2ovrb2         226 -KDNILVSGNADSTVKIWDIKTG------------QCLQTLQGPNKHQSAVTCLQF----NK----NFVITSSDDGTVKL  284 (342)
T ss_dssp             -ETTEEEEEETTSCEEEEETTTC------------CEEEEECSTTSCSSCEEEEEE----CS----SEEEEEETTSEEEE
T ss_pred             -CCCEEEEEcCCCEEEEEecccc------------cccccccccceeeeceeeccc----CC----CeeEEEcCCCEEEE
Confidence             4579999999999999999887            3444444   34455666666    56    77999999999975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=3.8e-27  Score=196.47  Aligned_cols=236  Identities=10%  Similarity=0.065  Sum_probs=175.6

Q ss_pred             CceeEEEEcCCCcEEEEeeCCC--eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDN--HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      ..|.+++|+|||++|++++.+.  .|++||.++++..               .+. .+...|.+++|       +|++++
T Consensus        43 ~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~---------------~~~-~~~~~v~~~~~-------spdg~~   99 (360)
T d1k32a3          43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE---------------KFE-ENLGNVFAMGV-------DRNGKF   99 (360)
T ss_dssp             SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE---------------ECC-CCCCSEEEEEE-------CTTSSE
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE---------------Eee-CCCceEEeeee-------cccccc
Confidence            4689999999999998877553  7999999988764               233 35677888777       779999


Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-----------CCcEEEEEcCCCCCeee
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-----------LSEVKIFSTDRPGRECV  148 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------d~~i~i~d~~~~~~~~~  148 (334)
                      |++++.++.+++|++.+++....+..+..     .+.+++|+|||++|+.+.           ++.+++|++.. + ...
T Consensus       100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~-~-~~~  172 (360)
T d1k32a3         100 AVVANDRFEIMTVDLETGKPTVIERSREA-----MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-R-KIF  172 (360)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECSSS-----CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-T-EEE
T ss_pred             cceeccccccccccccccceeeeeecccc-----cccchhhccceeeeeeeccccccceeeccccceeeecccc-C-cee
Confidence            99999999999999999988888776554     788999999999998532           34689999985 3 333


Q ss_pred             eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc-------eEeecc----------------------
Q psy2305         149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP-------LFFLKG----------------------  199 (334)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~----------------------  199 (334)
                          ....+...+..++|+|+|+ .|++++.++.+.+||......       ...+..                      
T Consensus       173 ----~~~~~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  247 (360)
T d1k32a3         173 ----AATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY  247 (360)
T ss_dssp             ----ECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC
T ss_pred             ----eecccccccccccccCCCC-EEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccce
Confidence                3455677888999999999 999999999999998643211       111100                      


Q ss_pred             --------------CCCCeEEEEEccCC-------------cEEEeeecCCCeEEEEEccCCCccceeecccccCCceEE
Q psy2305         200 --------------HNGGITHLEFSSNG-------------ILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVY  252 (334)
Q Consensus       200 --------------~~~~i~~~~~~~~~-------------~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  252 (334)
                                    ..+....+...+++             .++++++ .++.|++||+.+ ++ ...+.     ..+.+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~-~~-~~~~~-----~~v~~  319 (360)
T d1k32a3         248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP-EKGVLLKYDVKT-RK-VTEVK-----NNLTD  319 (360)
T ss_dssp             CCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC-CCEEEEEEETTT-CC-EEEEE-----EEEEE
T ss_pred             eecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecC-CCCEEEEEECCC-Ce-EEEec-----CCcCE
Confidence                          11122233333322             2344555 688999999986 33 22222     34678


Q ss_pred             EEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         253 FDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       253 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      ++|+|||++|++++.||.|++||++.++
T Consensus       320 ~~~SpDG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         320 LRLSADRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             EEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred             EEECCCCCEEEEEECCCeEEEEECCCCC
Confidence            9999999999999999999999999983

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.7e-27  Score=192.40  Aligned_cols=257  Identities=9%  Similarity=-0.058  Sum_probs=175.1

Q ss_pred             eeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcC-ccccccccceeEEEEcCCC-CEEEEee-
Q psy2305          55 IKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRP-YNQVDEVTHAYSLAFSLDG-NKIYAGF-  131 (334)
Q Consensus        55 ~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~~-  131 (334)
                      ..|.+.|++++|       +|++++|++|+.||+|+|||+.++.....+.. ..|..   +|.+++|+|++ .+|++|+ 
T Consensus         8 ~~h~d~I~~l~f-------sp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~---~V~~v~f~~~~~~~l~sg~~   77 (342)
T d1yfqa_           8 QAPKDYISDIKI-------IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH---PLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             SCCSSCEEEEEE-------EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS---CEEEEEEEESSSEEEEEEET
T ss_pred             CCCCCCEEEEEE-------eCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCC---CEEEEEEeCCCCCEEEEccc
Confidence            456678999888       66999999999999999999876543322221 11222   89999999875 4677887 


Q ss_pred             CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee----ccC--CCCeE
Q psy2305         132 LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL----KGH--NGGIT  205 (334)
Q Consensus       132 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~--~~~i~  205 (334)
                      |+.|++|++... .....   ....+........+.++.. .+++++.++.+++||++++......    ..+  .....
T Consensus        78 d~~v~~w~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d1yfqa_          78 QGEILKVDLIGS-PSFQA---LTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK  152 (342)
T ss_dssp             TSCEEEECSSSS-SSEEE---CBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC
T ss_pred             ccceeeeecccc-ccccc---ccccccccccccccccccc-cccccccccccceeeccccccceeeecccccccccceee
Confidence            999999999873 33332   2333334444555666666 9999999999999999765433322    222  22345


Q ss_pred             EEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEE-ecCCCceEEeeecCCcEEEEeCCCCCCCCC
Q psy2305         206 HLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFD-LTSCSNYLLSGNTNGDLSIWNVNTSNLPSS  284 (334)
Q Consensus       206 ~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  284 (334)
                      .+.+.+++..+++++ .|+.|++||++...................... ++.++..+++++.||.+.+|+.........
T Consensus       153 ~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~  231 (342)
T d1yfqa_         153 IFTMDTNSSRLIVGM-NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             EEEEEECSSEEEEEE-STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             eeeeeccCCceeeec-CCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceee
Confidence            667788889999999 899999999987332222222222223333333 455678899999999999999876543311


Q ss_pred             CCccc---cccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         285 PYEES---VQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       285 ~~~~~---~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .....   ..+.......|...|++++|  +|++    ++||+|+.||.|++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~--sp~~----~~lasg~~Dg~v~v  277 (342)
T d1yfqa_         232 SSKRFAFRCHRLNLKDTNLAYPVNSIEF--SPRH----KFLYTAGSDGIISC  277 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEE--CTTT----CCEEEEETTSCEEE
T ss_pred             ccccceeeeeeeccCCCcccccceeEEe--cCCc----cEEEEECCCCEEEE
Confidence            11110   11122233456667899999  9999    99999999999875

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=8.4e-26  Score=193.04  Aligned_cols=270  Identities=11%  Similarity=0.021  Sum_probs=184.0

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      +.+..++|||||++|++++.|++|++||+.+++..              .............+.+   +++|+|||++++
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~--------------~~~~i~~~~~~~~~~~---s~~~spDG~~l~  124 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--------------KVAEIKIGIEARSVES---SKFKGYEDRYTI  124 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--------------EEEEEECCSEEEEEEE---CCSTTCTTTEEE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee--------------EEEEEeCCCCCcceEE---eeeecCCCCEEE
Confidence            35789999999999999999999999999988754              1222222223344444   356789999875


Q ss_pred             Ee-eCCCcEEEEeCCCCeeeEEEcCccccc------cccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecc
Q psy2305          82 CS-SMYAPIHLWDSVGGEIKATYRPYNQVD------EVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        82 ~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      ++ ..++.+.+||..+++....+..+....      ..+....+.+++++..++...  .+.+.+++... ......   
T Consensus       125 v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~-~~~~~~---  200 (426)
T d1hzua2         125 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD-IDNLTV---  200 (426)
T ss_dssp             EEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS-SSSCEE---
T ss_pred             EeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc-ccceee---
Confidence            54 578999999999998887766543210      111345677788887777554  46666666654 222221   


Q ss_pred             cccccccceEEEEEcCCCCcEEEEe-ecCCeEEEEECCCC----------------------------------------
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALG-TYSKIIGLFSDSDG----------------------------------------  191 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~----------------------------------------  191 (334)
                      ....+...+..+.|+|+++ +++++ ..+..+.+++..++                                        
T Consensus       201 ~~~~~~~~~~~~~~~~~g~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  279 (426)
T d1hzua2         201 TSIGAAPFLADGGWDSSHR-YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS  279 (426)
T ss_dssp             EEEECCSSEEEEEECTTSC-EEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEE
T ss_pred             EEeccCCccEeeeECCCCc-EEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEE
Confidence            3445677888999999998 54444 34445555554332                                        


Q ss_pred             --------------CceEeeccCCCCeEEEEEccCCcEEEe-------eecCCCeEEEEEccCCCccceeecc-------
Q psy2305         192 --------------RPLFFLKGHNGGITHLEFSSNGILLFS-------GARKDCEIICWDLRNPGCILHTFPR-------  243 (334)
Q Consensus       192 --------------~~~~~~~~~~~~i~~~~~~~~~~~l~~-------~~~~d~~i~iwd~~~~~~~~~~~~~-------  243 (334)
                                    +....+.+|...+..++|+|++++|++       +. .+++|++||+.+ ++...++..       
T Consensus       280 ~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~-~~~tv~vwd~~t-~~~~~~~~~~~~~~~~  357 (426)
T d1hzua2         280 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDAR-ISQSVAVFDLKN-LDAKYQVLPIAEWADL  357 (426)
T ss_dssp             EEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHH-HHTCEEEEETTC-TTSCCEEECHHHHHCC
T ss_pred             EeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcc-cCCEEEEEECCC-CCcCeEEeccchhccc
Confidence                          233445677778899999999999994       45 578999999987 544444321       


Q ss_pred             cccCCceEEEEecCCCceEEee-----ecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCc
Q psy2305         244 QVSTNQRVYFDLTSCSNYLLSG-----NTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFE  315 (334)
Q Consensus       244 ~~~~~~~~~~~~s~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~  315 (334)
                      ......+.+++|||||++++.+     +.+|.|+|||.++.            +....+.++.      .+  +|+|
T Consensus       358 ~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~------------k~~~~i~~~~------~~--tp~G  414 (426)
T d1hzua2         358 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL------------KLKAVVKDPR------LI--TPTG  414 (426)
T ss_dssp             CSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT------------EEEEEECCTT------CC--SEEE
T ss_pred             CCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCC------------eEEEEECCCC------cc--CCCc
Confidence            1124568889999999977432     45789999999998            5666666543      45  7777

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1e-25  Score=192.42  Aligned_cols=283  Identities=11%  Similarity=0.040  Sum_probs=186.8

Q ss_pred             EcCCCc--EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC
Q psy2305           9 EAPDGT--CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY   86 (334)
Q Consensus         9 ~sp~~~--~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d   86 (334)
                      +++|.+  ++++.+.||+|+|||+.+++..              ..+..+  ..+..++|       ||||++|++++.|
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~--------------~~l~~g--~~~~~vaf-------SPDGk~l~~~~~d   82 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIV--------------KVIDTG--YAVHISRM-------SASGRYLLVIGRD   82 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEE--------------EEEECC--SSEEEEEE-------CTTSCEEEEEETT
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEE--------------EEEeCC--CCeeEEEE-------CCCCCEEEEEeCC
Confidence            444433  5577888999999999999876              455543  34666555       8899999999999


Q ss_pred             CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecc-------ccccc
Q psy2305          87 APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNL-------KPWFR  157 (334)
Q Consensus        87 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~-------~~~~~  157 (334)
                      ++|++||+.+++.....+......+...+.+++|+|||++++++ . ++.+.+||..+ +........       ....+
T Consensus        83 ~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~  161 (426)
T d1hzua2          83 ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPKQIVSTRGMTVDTQTYHP  161 (426)
T ss_dssp             SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEEEEEECCEECSSSCCEES
T ss_pred             CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc-cceeEEeeccCCCccceeecC
Confidence            99999999988754333211111111256677888999998755 3 89999999987 444332110       11123


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce-EeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL-FFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC  236 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~  236 (334)
                      ......+.+++++..++.+....+.+.+++....... .....+...+..+.|+|++++++++...+..+.+++... +.
T Consensus       162 ~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~-~~  240 (426)
T d1hzua2         162 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD-RR  240 (426)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT-TE
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc-cc
Confidence            3445667778888733334444567777777655432 233457778899999999998888764566677777654 22


Q ss_pred             cc------------------------------------------------------eeecccccCCceEEEEecCCCceE
Q psy2305         237 IL------------------------------------------------------HTFPRQVSTNQRVYFDLTSCSNYL  262 (334)
Q Consensus       237 ~~------------------------------------------------------~~~~~~~~~~~~~~~~~s~~~~~l  262 (334)
                      ..                                                      ..+.+|  ...+..++|+|++++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~--~~~v~~v~~sPdg~~l  318 (426)
T d1hzua2         241 LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ--GGGSLFIKTHPKSSHL  318 (426)
T ss_dssp             EEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECS--SSCCCCEECCTTCSEE
T ss_pred             EEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecC--CCceeEEEcCCCCceE
Confidence            11                                                      111121  3345668899999999


Q ss_pred             Ee-------eecCCcEEEEeCCCCCCCCCCCcccccccc------ceecccccccceeeeccCCCcccceeeE-Eee---
Q psy2305         263 LS-------GNTNGDLSIWNVNTSNLPSSPYEESVQEPL------YKFSAHQDCTNGVRWKHHKFERDLLVAD-ATC---  325 (334)
Q Consensus       263 ~~-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~s~~~~~~~~~l-~t~---  325 (334)
                      ++       ++.+++|+|||+.+++..         ..+      ..+..|...+.+++|  +|||    +++ +++   
T Consensus       319 ~v~~~~~~s~~~~~tv~vwd~~t~~~~---------~~~~~~~~~~~~~~~~~rv~~~~f--SpDG----k~i~vs~~~~  383 (426)
T d1hzua2         319 YVDTTFNPDARISQSVAVFDLKNLDAK---------YQVLPIAEWADLGEGAKRVVQPEY--NKRG----DEVWFSVWNG  383 (426)
T ss_dssp             EECCTTCSSHHHHTCEEEEETTCTTSC---------CEEECHHHHHCCCSSCCCEEEEEE--CSSS----SEEEEEECCC
T ss_pred             EEeecCCCCcccCCEEEEEECCCCCcC---------eEEeccchhcccCCCCccEEEEEE--CCCC----CEEEEEEecC
Confidence            94       556889999999998432         111      112345567889999  9999    765 332   


Q ss_pred             -ecceeeee
Q psy2305         326 -SGQITNVK  333 (334)
Q Consensus       326 -~~d~~i~~  333 (334)
                       +.|+.|++
T Consensus       384 ~~~~~~i~v  392 (426)
T d1hzua2         384 KNDSSALVV  392 (426)
T ss_dssp             TTSCCEEEE
T ss_pred             CCCCCeEEE
Confidence             35676654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.4e-25  Score=178.66  Aligned_cols=225  Identities=12%  Similarity=0.178  Sum_probs=173.8

Q ss_pred             eceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcE
Q psy2305          57 EGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEV  135 (334)
Q Consensus        57 ~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i  135 (334)
                      +...|+++.|         ++++|++|+.||+|+|||+.+++.+..+..|..     .|++++|  ++++|++|+ |+.|
T Consensus        14 ~~~~V~c~~~---------d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~-----~V~~v~~--~~~~l~s~s~D~~i   77 (293)
T d1p22a2          14 TSKGVYCLQY---------DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-----SVLCLQY--DERVIITGSSDSTV   77 (293)
T ss_dssp             SCCCEEEEEC---------CSSEEEEEESSSCEEEEESSSCCEEEEECCCSS-----CEEEEEC--CSSEEEEEETTSCE
T ss_pred             CCCCEEEEEE---------cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-----CEeeeec--ccceeecccccccc
Confidence            4456776544         899999999999999999999999999987655     8888876  577999887 9999


Q ss_pred             EEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCc---eEeeccCCCCeEEEEEccC
Q psy2305         136 KIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRP---LFFLKGHNGGITHLEFSSN  212 (334)
Q Consensus       136 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~  212 (334)
                      ++|++.. +.....    ...+...  ...+.+... .++++..++.+.+||..+...   ...+..|...+..+.+.+ 
T Consensus        78 ~~~~~~~-~~~~~~----~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  148 (293)
T d1p22a2          78 RVWDVNT-GEMLNT----LIHHCEA--VLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-  148 (293)
T ss_dssp             EEEESSS-CCEEEE----ECCCCSC--EEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET-
T ss_pred             ccccccc-cccccc----ccccccc--ccccccccc-ceeecccccceeEeeccccccccccccccccccccccceecc-
Confidence            9999996 433332    2222222  334445555 888999999999999977653   344567888888877764 


Q ss_pred             CcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCcccccc
Q psy2305         213 GILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQE  292 (334)
Q Consensus       213 ~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  292 (334)
                       ..+++++ .|+.+++||+++ .+.+..+..+  ...+..+.+  ++.++++++.||.|++||+++.            .
T Consensus       149 -~~~~~~s-~d~~i~~~d~~~-~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~------------~  209 (293)
T d1p22a2         149 -KYIVSAS-GDRTIKVWNTST-CEFVRTLNGH--KRGIACLQY--RDRLVVSGSSDNTIRLWDIECG------------A  209 (293)
T ss_dssp             -TEEEEEE-TTSEEEEEETTT-CCEEEEEECC--SSCEEEEEE--ETTEEEEEETTSCEEEEETTTC------------C
T ss_pred             -ccccccc-CCCceeeecCCC-CcEEEEEccc--ccccccccC--CCCeEEEecCCCEEEEEecccc------------e
Confidence             4678888 899999999998 6777777665  445555544  5679999999999999999987            6


Q ss_pred             ccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         293 PLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       293 ~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      .+..+.+|...+..  +  ++++    .+|++++.||.+++
T Consensus       210 ~~~~~~~~~~~v~~--~--~~~~----~~l~sg~~dg~i~i  242 (293)
T d1p22a2         210 CLRVLEGHEELVRC--I--RFDN----KRIVSGAYDGKIKV  242 (293)
T ss_dssp             EEEEECCCSSCEEE--E--ECCS----SEEEEEETTSCEEE
T ss_pred             eeeeecccceeeee--c--cccc----eEEEEEcCCCEEEE
Confidence            77778888777665  4  5578    89999999999875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=1.7e-25  Score=191.03  Aligned_cols=287  Identities=9%  Similarity=-0.009  Sum_probs=183.0

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE-E
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF-L   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l-~   81 (334)
                      .+..++|||||++|++++.|+.|++||+.+++..              ...+.........+.++   ..|+|||++| +
T Consensus        63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~--------------~~~~i~~~~~~~~~~~s---~~~SpDG~~l~v  125 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--------------TVAEIKIGSEARSIETS---KMEGWEDKYAIA  125 (432)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--------------EEEEEECCSEEEEEEEC---CSTTCTTTEEEE
T ss_pred             CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce--------------EEEEEecCCCCCCeEEe---cccCCCCCEEEE
Confidence            5789999999999999999999999999887643              12221222233445554   3569999986 6


Q ss_pred             EeeCCCcEEEEeCCCCeeeEEEcCcccc------ccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeeccc
Q psy2305          82 CSSMYAPIHLWDSVGGEIKATYRPYNQV------DEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLK  153 (334)
Q Consensus        82 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~  153 (334)
                      +++.++.|++||..+++.+..+..+...      ........+.++|+|..++.+ . ++.|.+||... .+....   .
T Consensus       126 s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~-~~~~~~---~  201 (432)
T d1qksa2         126 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD-LNNLKT---T  201 (432)
T ss_dssp             EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC-SSEEEE---E
T ss_pred             EcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccC-CCcceE---E
Confidence            7778999999999999988877653211      112256788999999987754 4 79999999886 333332   1


Q ss_pred             ccccccceEEEEEcCCCCcEEEEe-ecCCeEEEEECCCCCceEeecc-----CCCCeEEEEEccCCcEEEeeecCCCeEE
Q psy2305         154 PWFRKNIVSAIAINPVHPDICALG-TYSKIIGLFSDSDGRPLFFLKG-----HNGGITHLEFSSNGILLFSGARKDCEII  227 (334)
Q Consensus       154 ~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~~d~~i~  227 (334)
                      ...+...+.+++|+|+|+ +++++ ..++.+.++|..+++.+..+..     |........+...+....+..-.++.+.
T Consensus       202 ~i~~g~~~~~~~~spdg~-~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~  280 (432)
T d1qksa2         202 EISAERFLHDGGLDGSHR-YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVA  280 (432)
T ss_dssp             EEECCSSEEEEEECTTSC-EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEE
T ss_pred             EEcccCccccceECCCCC-EEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEE
Confidence            234456788999999999 55555 4567899999987766554421     2233333344333333333321255666


Q ss_pred             EEEccCCCc------cceeeccc----------ccCC-------------ceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         228 CWDLRNPGC------ILHTFPRQ----------VSTN-------------QRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       228 iwd~~~~~~------~~~~~~~~----------~~~~-------------~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      +|+......      ....+..+          ....             ...++++ ||++.|++++.|+.+++|++.+
T Consensus       281 ~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~  359 (432)
T d1qksa2         281 LIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAE  359 (432)
T ss_dssp             EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHH
T ss_pred             ecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEeccccc
Confidence            665433110      01111000          0000             0112333 7888899999999999998755


Q ss_pred             CCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeee-----cceeeee
Q psy2305         279 SNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCS-----GQITNVK  333 (334)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~-----~d~~i~~  333 (334)
                      +               ..+..|...+.+++|  +|||    ++|+.+.     .+|.|++
T Consensus       360 ~---------------~~l~~~~~~v~~~~f--S~DG----~~v~~S~~~~~~~~g~i~i  398 (432)
T d1qksa2         360 W---------------AGITEGQPRVVQGEF--NKDG----TEVWFSVWNGKDQESALVV  398 (432)
T ss_dssp             H---------------HTCCSSCCEEEEEEE--CTTS----SEEEEEEECCTTSCCEEEE
T ss_pred             c---------------cccCCCCCcEEEeEE--CCCC----CEEEEEEecCCCCCCcEEE
Confidence            3               223356677889999  9999    8775554     3566654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=6.5e-24  Score=172.24  Aligned_cols=260  Identities=12%  Similarity=0.076  Sum_probs=194.1

Q ss_pred             EEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE-EeeCCCcEEEE
Q psy2305          15 CLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL-CSSMYAPIHLW   92 (334)
Q Consensus        15 ~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~-~~~~d~~i~iw   92 (334)
                      |++ +++.|++|.+||+.+++..              ..+..  +.....+       +|+|||++|+ +++.++.|.+|
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~--------------~~i~~--g~~p~~v-------a~spdG~~l~v~~~~~~~i~v~   59 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVT--------------ATIPV--GSNPMGA-------VISPDGTKVYVANAHSNDVSII   59 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEE--------------EEEEC--SSSEEEE-------EECTTSSEEEEEEGGGTEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEE--------------EEEEC--CCCceEE-------EEeCCCCEEEEEECCCCEEEEE
Confidence            444 5668899999999999866              33332  2334444       4588999874 66678999999


Q ss_pred             eCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCC
Q psy2305          93 DSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVH  170 (334)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  170 (334)
                      |+.+++.+..+..+.      .+..++|++++..++++ . ++.+.+|+... +....     ...+.....++.++|++
T Consensus        60 d~~t~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~dg  127 (301)
T d1l0qa2          60 DTATNNVIATVPAGS------SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVAG-----TVKTGKSPLGLALSPDG  127 (301)
T ss_dssp             ETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEE-----EEECSSSEEEEEECTTS
T ss_pred             ECCCCceeeeeeccc------cccccccccccccccccccccceeeeccccc-ceeee-----eccccccceEEEeecCC
Confidence            999999998887644      57899999999987755 3 78999999985 44333     22344567899999999


Q ss_pred             CcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCce
Q psy2305         171 PDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQR  250 (334)
Q Consensus       171 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  250 (334)
                      ..+++++..++.+.+|+..+.+.+..+..+ ..+..+.++|+++.+++++..++.+.+|+... ......+..   ....
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~  202 (301)
T d1l0qa2         128 KKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVKV---EAAP  202 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC---SSEE
T ss_pred             CeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccc-eeeeecccc---cCCc
Confidence            945566777899999999999888877644 45789999999999888873456777777765 444443332   3456


Q ss_pred             EEEEecCCCceEEeeec---CCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeE-Eeee
Q psy2305         251 VYFDLTSCSNYLLSGNT---NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVAD-ATCS  326 (334)
Q Consensus       251 ~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l-~t~~  326 (334)
                      ..+++++++..++.+..   ++.|++||+.++            +.+..+..+ ..+.+++|  +|||    ++| ++++
T Consensus       203 ~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~------------~~~~~~~~~-~~~~~va~--spdg----~~l~va~~  263 (301)
T d1l0qa2         203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN------------KITARIPVG-PDPAGIAV--TPDG----KKVYVALS  263 (301)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEETTTT------------EEEEEEECC-SSEEEEEE--CTTS----SEEEEEET
T ss_pred             ceeeccccccccccccccceeeeeeeeecCCC------------eEEEEEcCC-CCEEEEEE--eCCC----CEEEEEEC
Confidence            67889999998876543   468999999997            555555543 45789999  9999    876 6777


Q ss_pred             cceeeee
Q psy2305         327 GQITNVK  333 (334)
Q Consensus       327 ~d~~i~~  333 (334)
                      .|++|.+
T Consensus       264 ~~~~i~v  270 (301)
T d1l0qa2         264 FCNTVSV  270 (301)
T ss_dssp             TTTEEEE
T ss_pred             CCCeEEE
Confidence            8888865

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=9.7e-23  Score=165.23  Aligned_cols=236  Identities=14%  Similarity=0.089  Sum_probs=176.1

Q ss_pred             ceeEEEEcCCCcEEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE
Q psy2305           3 IEEDVDEAPDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~   81 (334)
                      .+..++|+|||++|+ +++.++.|++||+.+++..              ..+..+  .....+.|       +++++.++
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~--------------~~~~~~--~~~~~~~~-------~~~~~~~~   89 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--------------ATVPAG--SSPQGVAV-------SPDGKQVY   89 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--------------EEEECS--SSEEEEEE-------CTTSSEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcee--------------eeeecc--cccccccc-------cccccccc
Confidence            367899999999875 5668899999999988765              233322  23445454       77887655


Q ss_pred             -EeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          82 -CSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        82 -~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                       ++..++.+.+|+..+++....+....      .+.++.|+|++..++.+ . ++.+.+|+..+ .....     ...+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~  157 (301)
T d1l0qa2          90 VTNMASSTLSVIDTTSNTVAGTVKTGK------SPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAVIN-----TVSVG  157 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEE-----EEECC
T ss_pred             ccccccceeeecccccceeeeeccccc------cceEEEeecCCCeeeeeeccccceeeeeccc-cceee-----ecccC
Confidence             45567789999999998888877543      57899999999988755 4 78899999986 44333     22334


Q ss_pred             cceEEEEEcCCCCcEEEEee-cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeee--cCCCeEEEEEccCCC
Q psy2305         159 NIVSAIAINPVHPDICALGT-YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA--RKDCEIICWDLRNPG  235 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~d~~i~iwd~~~~~  235 (334)
                      ..+..++++|++. .+++++ .++.+.+|+....+....+. ....+..++|+++++.++++.  ..++.|++||+.+ +
T Consensus       158 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t-~  234 (301)
T d1l0qa2         158 RSPKGIAVTPDGT-KVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT-N  234 (301)
T ss_dssp             SSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT-T
T ss_pred             CCceEEEeecccc-ceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCC-C
Confidence            5678999999999 666555 45778888877766666655 445678899999999877654  1346899999987 6


Q ss_pred             ccceeecccccCCceEEEEecCCCceE-EeeecCCcEEEEeCCCC
Q psy2305         236 CILHTFPRQVSTNQRVYFDLTSCSNYL-LSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~  279 (334)
                      +.+..+..   ...+..++|+|||++| ++++.++.|++||++++
T Consensus       235 ~~~~~~~~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         235 KITARIPV---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             EEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eEEEEEcC---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            66665553   3456789999999987 56777999999999998

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=1.1e-23  Score=173.58  Aligned_cols=264  Identities=9%  Similarity=-0.030  Sum_probs=183.7

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeee-ceeEEEEEEecccceecCCCcEE-EEeeCCCcEEE
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKE-GGIIYDYVWYPKTSSIDGFTSYF-LCSSMYAPIHL   91 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~s~~~~~l-~~~~~d~~i~i   91 (334)
                      +||++++.|++|+|||+.+.+..              ..+..+. ...+.       .++|+|||+++ ++++.++.|.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~--------------~~i~~~~~~~~~~-------~i~~spDg~~l~v~~~~~~~v~v   60 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVD--------------KVITIADAGPTPM-------VPMVAPGGRIAYATVNKSESLVK   60 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEE--------------EEEECTTCTTCCC-------CEEECTTSSEEEEEETTTTEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEE--------------EEEECCCCCCCcc-------EEEECCCCCEEEEEECCCCeEEE
Confidence            58999999999999999998866              3443322 22333       45558899987 45678899999


Q ss_pred             EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-------------CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-------------LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      ||+.+++.+..+...........+..++|+|++++++++.             +..+.+||..+ +....     ...+.
T Consensus        61 ~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~-----~~~~~  134 (337)
T d1pbyb_          61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET-LSRRK-----AFEAP  134 (337)
T ss_dssp             EETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT-TEEEE-----EEECC
T ss_pred             EECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC-CeEEE-----ecccc
Confidence            9999999988877654322222567899999999988653             45788888885 44333     22344


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC------------------------c
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG------------------------I  214 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~------------------------~  214 (334)
                      ..+.+++|+|+|+ ++++++  +.+.+||..+++....+..+... ....++|++                        .
T Consensus       135 ~~~~~~~~s~dg~-~l~~~~--~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (337)
T d1pbyb_         135 RQITMLAWARDGS-KLYGLG--RDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDID  210 (337)
T ss_dssp             SSCCCEEECTTSS-CEEEES--SSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred             CCceEEEEcCCCC-EEEEEc--CCcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccc
Confidence            5678899999999 777775  45778999888777766433211 111122222                        1


Q ss_pred             EEEeeecCCCeEEEEEccCCCccce-eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccc
Q psy2305         215 LLFSGARKDCEIICWDLRNPGCILH-TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEP  293 (334)
Q Consensus       215 ~l~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  293 (334)
                      .+.... .++.+.+||... +.... .+..  .......+.++|++.+++.+  ++.|++||+.++            +.
T Consensus       211 ~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~------------~~  272 (337)
T d1pbyb_         211 PADPTA-YRTGLLTMDLET-GEMAMREVRI--MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN------------AS  272 (337)
T ss_dssp             TTSGGG-EEEEEEEEETTT-CCEEEEEEEE--CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT------------EE
T ss_pred             eeeecc-cCccEEEEEcCC-CcEEEEEecC--CCcceEEEEecccceEEEEc--cccEEEEECCCC------------cE
Confidence            222233 355688888886 43222 2222  35556678899999998765  578999999997            55


Q ss_pred             cceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         294 LYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       294 ~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                      +..+. +...+.+++|  +|||    ++|++++.|++|.+
T Consensus       273 ~~~~~-~~~~~~~~~~--s~dG----~~l~v~~~~~~i~v  305 (337)
T d1pbyb_         273 IKRVP-LPHSYYSVNV--STDG----STVWLGGALGDLAA  305 (337)
T ss_dssp             EEEEE-CSSCCCEEEE--CTTS----CEEEEESBSSEEEE
T ss_pred             EEEEc-CCCCEEEEEE--CCCC----CEEEEEeCCCcEEE
Confidence            55554 4567899999  9999    99999999998865

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=2.8e-24  Score=177.82  Aligned_cols=275  Identities=12%  Similarity=0.003  Sum_probs=187.5

Q ss_pred             EEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEE-EeeC
Q psy2305           7 VDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFL-CSSM   85 (334)
Q Consensus         7 ~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~-~~~~   85 (334)
                      ++|+++++||++++.+++|.+||+.+++..              ..+...+...+.+       ++|+|||++++ ++..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~--------------~t~~~~~~~~p~~-------l~~spDG~~l~v~~~~   60 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVY--------------KSCVMPDKFGPGT-------AMMAPDNRTAYVLNNH   60 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEE--------------EEEECSSCCSSCE-------EEECTTSSEEEEEETT
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEE--------------EEEEcCCCCCcce-------EEECCCCCEEEEEECC
Confidence            578999999999999999999999999866              3444434333334       45588999874 5567


Q ss_pred             CCcEEEEeCCCCeeeEEEcCcccc-ccccceeEEEEcCCCCEEEEee-------------CCcEEEEEcCCCCCeeeeec
Q psy2305          86 YAPIHLWDSVGGEIKATYRPYNQV-DEVTHAYSLAFSLDGNKIYAGF-------------LSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        86 d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-------------d~~i~i~d~~~~~~~~~~~~  151 (334)
                      ++.|.+||+.+++.+..+...... .....+..++|+|||++++++.             ++.+.+|+..+ +...... 
T Consensus        61 ~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~-  138 (346)
T d1jmxb_          61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD-GLEAKPV-  138 (346)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG-GGGBCCS-
T ss_pred             CCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc-ceeeeEE-
Confidence            899999999999988777543221 1111467899999999887542             56678888775 3332211 


Q ss_pred             ccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEE--------------
Q psy2305         152 LKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLF--------------  217 (334)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--------------  217 (334)
                       ........+..+.+++++. ++++   ++.+.+|++.+++.+..+..+. ....+.++|++..++              
T Consensus       139 -~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (346)
T d1jmxb_         139 -RTFPMPRQVYLMRAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYT  212 (346)
T ss_dssp             -EEEECCSSCCCEEECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEE
T ss_pred             -EeeeccCceEEEEecCCCE-EEEe---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeee
Confidence             1112234556677778876 5554   3568999999988888776443 233444555544332              


Q ss_pred             ------------eeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCC
Q psy2305         218 ------------SGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSP  285 (334)
Q Consensus       218 ------------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  285 (334)
                                  ++. .+..+.+||+............  ....+..+.+++++.+++.... +.|.+||..++      
T Consensus       213 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~------  282 (346)
T d1jmxb_         213 IARFKDDKQDPATAD-LLYGYLSVDLKTGKTHTQEFAD--LTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQR------  282 (346)
T ss_dssp             EEEC-------CCCE-EEEEEEEEETTTCCEEEEEEEE--CSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTT------
T ss_pred             eeeeccCceeEeecc-CCceEEEEECCCCceEEEEeec--ccceeEEEEEeCCCCEEEEecC-CeEEEEECCCC------
Confidence                        333 3455677777652222222222  2455667788999888887664 57999999997      


Q ss_pred             CccccccccceecccccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         286 YEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                            +.+..+. +...+.+++|  +|||    ++|++++.|+.|.+
T Consensus       283 ------~~~~~~~-~~~~~~~va~--s~DG----~~l~v~~~d~~v~v  317 (346)
T d1jmxb_         283 ------KLIKAAN-LDHTYYCVAF--DKKG----DKLYLGGTFNDLAV  317 (346)
T ss_dssp             ------EEEEEEE-CSSCCCEEEE--CSSS----SCEEEESBSSEEEE
T ss_pred             ------cEEEEEc-CCCCEEEEEE--cCCC----CEEEEEeCCCcEEE
Confidence                  5555554 3456899999  9999    99999999999875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=7.2e-23  Score=174.57  Aligned_cols=239  Identities=9%  Similarity=0.014  Sum_probs=164.9

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCCcEEEEe
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYAPIHLWD   93 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~~i~iwd   93 (334)
                      -++++.+.+|+|.|||..+++..              ..+..+  ..+..++|       ||||+++++++.|+.+++||
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~--------------~~~~~g--~~~~~v~f-------SpDG~~l~~~s~dg~v~~~d   89 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIK--------------TVLDTG--YAVHISRL-------SASGRYLFVIGRDGKVNMID   89 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEE--------------EEEECS--SCEEEEEE-------CTTSCEEEEEETTSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEE--------------EEEeCC--CCeeEEEE-------CCCCCEEEEEcCCCCEEEEE
Confidence            34688899999999999999987              455543  34666655       88999999999999999999


Q ss_pred             CCCCeee--EEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCCeeeeecc-------cccccccceE
Q psy2305          94 SVGGEIK--ATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGRECVSRNL-------KPWFRKNIVS  162 (334)
Q Consensus        94 ~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~~~-------~~~~~~~~v~  162 (334)
                      +.+++..  ..++..  ..+.+.+.+..|+|||++|+ +++ ++.+++||..+ ++.......       ....+.....
T Consensus        90 ~~t~~~~~~~~i~~~--~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t-~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (432)
T d1qksa2          90 LWMKEPTTVAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET-LEPKKIQSTRGMTYDEQEYHPEPRVA  166 (432)
T ss_dssp             TTSSSCCEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT-CCEEEEEECCEECTTTCCEESCCCEE
T ss_pred             eeCCCceEEEEEecC--CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc-ccceeeeccCCccccceeccCCCcee
Confidence            9887643  333321  11111556667888999875 555 89999999987 554442211       1123455677


Q ss_pred             EEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceee
Q psy2305         163 AIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       163 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                      .+.++|++..++++...++.|.+||..+.+...... .+...+..++|+|+|+++++++..++.+.++|... .+....+
T Consensus       167 ~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~-~~~~~~~  245 (432)
T d1qksa2         167 AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKLVAIE  245 (432)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEE
T ss_pred             EEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc-ceEEEEe
Confidence            899999998556677788999999998876544332 34567889999999999888885677899999986 5544433


Q ss_pred             ccc---ccCCceEEEEecCCCceEEeee-cCCcEEEEeCCCC
Q psy2305         242 PRQ---VSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNVNTS  279 (334)
Q Consensus       242 ~~~---~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  279 (334)
                      ...   ........+.+...+...++.. .++.+.+|+....
T Consensus       246 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         246 DTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             ECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             ccCccccccCcccceecCCCCceecccccCCceEEecccccc
Confidence            221   1122333444555555554443 3778888876654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=5.6e-22  Score=163.16  Aligned_cols=243  Identities=12%  Similarity=0.098  Sum_probs=169.5

Q ss_pred             eeEEEEcCCCcEEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           4 EEDVDEAPDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         4 V~~~~~sp~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      +.+++|+|||++|+ +++.++.|.+||+.+++...              .+..+.. ..  ..-.+..++++|+++++++
T Consensus        36 ~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~--------------~~~~~~~-~~--~~~~~~~v~~s~dg~~l~~   98 (337)
T d1pbyb_          36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG--------------RIDLSTP-EE--RVKSLFGAALSPDGKTLAI   98 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE--------------EEECCBT-TE--EEECTTCEEECTTSSEEEE
T ss_pred             ccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEE--------------EEecCCC-cc--cccceeeEEEcCCCcEEEE
Confidence            57899999999874 56789999999999988762              2222111 11  1112345677999999887


Q ss_pred             ee------------CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeee
Q psy2305          83 SS------------MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        83 ~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~  150 (334)
                      +.            .+..+.+||..+++....+....      .+..++|+|||+++++++ +.+.+||..+ +......
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~-~~~~~~d~~~-~~~~~~~  170 (337)
T d1pbyb_          99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR------QITMLAWARDGSKLYGLG-RDLHVMDPEA-GTLVEDK  170 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS------SCCCEEECTTSSCEEEES-SSEEEEETTT-TEEEEEE
T ss_pred             eecCCcceeeeccccccceeeccccCCeEEEeccccC------CceEEEEcCCCCEEEEEc-CCcceeeeec-CcEEEEe
Confidence            75            35678999999999888877533      578899999999998875 4477899886 4433322


Q ss_pred             cccccc-------------------cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe-eccCCCCeEEEEEc
Q psy2305         151 NLKPWF-------------------RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF-LKGHNGGITHLEFS  210 (334)
Q Consensus       151 ~~~~~~-------------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~  210 (334)
                      +.....                   +...........+.. ....+..++.+.+||..+++.... +..+...+..+.++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (337)
T d1pbyb_         171 PIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID-PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN  249 (337)
T ss_dssp             CSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC-TTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred             ecCCccccceecCCcceeeccccccceeeeeeeeeeeccc-eeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEec
Confidence            110000                   000011111112222 223344566799999988875543 45567788899999


Q ss_pred             cCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         211 SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       211 ~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      |++.+++.+   ++.|++||+.+ ++.+..+..   ...+.+++|+|||++|++++.+++|++||+++.
T Consensus       250 ~~~~~~~~~---~~~i~v~d~~~-~~~~~~~~~---~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         250 PAKTRAFGA---YNVLESFDLEK-NASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             TTSSEEEEE---ESEEEEEETTT-TEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             ccceEEEEc---cccEEEEECCC-CcEEEEEcC---CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            999888654   57899999998 666666542   445678999999999999999999999999998

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=4.4e-21  Score=157.70  Aligned_cols=278  Identities=12%  Similarity=0.111  Sum_probs=179.4

Q ss_pred             EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee-CCCcEEEEe
Q psy2305          15 CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS-MYAPIHLWD   93 (334)
Q Consensus        15 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~-~d~~i~iwd   93 (334)
                      .+++++.|++|++|+++......             ..-...+.+.+..++       |+|||++|++++ .|+.|++|+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~-------------~~~~~~~~~~v~~la-------~spDG~~L~v~~~~d~~i~~~~   65 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALT-------------LTQVVDVPGQVQPMV-------VSPDKRYLYVGVRPEFRVLAYR   65 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEE-------------EEEEEECSSCCCCEE-------ECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeE-------------EEEEEcCCCCEeEEE-------EeCCCCEEEEEECCCCeEEEEE
Confidence            34667799999999997654321             111223445555554       488999986554 589999999


Q ss_pred             CCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCC
Q psy2305          94 SVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHP  171 (334)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  171 (334)
                      +........+..+...  ...+..++|+|||++|+++.  ++.+.+|+... .......  ....+...+.++.++|+++
T Consensus        66 i~~~~~~~~~~~~~~~--~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~-~~~~~~~--~~~~~~~~~~~v~~s~d~~  140 (333)
T d1ri6a_          66 IAPDDGALTFAAESAL--PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED-GLPVGVV--DVVEGLDGCHSANISPDNR  140 (333)
T ss_dssp             ECTTTCCEEEEEEEEC--SSCCSEEEECTTSSEEEEEETTTTEEEEEEEET-TEEEEEE--EEECCCTTBCCCEECTTSS
T ss_pred             EeCCCCcEEEeeeccc--CCCceEEEEcCCCCEEeecccCCCceeeecccc-ccceecc--cccCCCccceEEEeeecce
Confidence            8765433222211111  11567899999999999775  67899999875 2222211  3445667788999999999


Q ss_pred             cEEEEee-cCCeEEEEECCCCCceEee------ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcccee---e
Q psy2305         172 DICALGT-YSKIIGLFSDSDGRPLFFL------KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHT---F  241 (334)
Q Consensus       172 ~~l~~~~-~dg~i~i~d~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~---~  241 (334)
                       .++.++ .+..|.+|+..........      .........++|++++.+++......+...+|+..........   .
T Consensus       141 -~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  219 (333)
T d1ri6a_         141 -TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL  219 (333)
T ss_dssp             -EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred             -eeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeee
Confidence             655554 5678999998765433221      2234556889999999988776646778888887653222211   1


Q ss_pred             c----ccccCCceEEEEecCCCceEEee-ecCCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcc
Q psy2305         242 P----RQVSTNQRVYFDLTSCSNYLLSG-NTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFER  316 (334)
Q Consensus       242 ~----~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~  316 (334)
                      .    ..........+++++++++++.. ..++.+.+|++......         ............+.+++|  +||| 
T Consensus       220 ~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~p~~~a~--spDG-  287 (333)
T d1ri6a_         220 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV---------LSKEGFQPTETQPRGFNV--DHSG-  287 (333)
T ss_dssp             ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC---------EEEEEEEECSSSCCCEEE--CTTS-
T ss_pred             eeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCE---------EEEEEEeCCCCCeeEEEE--eCCC-
Confidence            1    11123345667899999877655 45678999998765321         222222334456789999  9999 


Q ss_pred             cceeeEEeee-cceeeee
Q psy2305         317 DLLVADATCS-GQITNVK  333 (334)
Q Consensus       317 ~~~~~l~t~~-~d~~i~~  333 (334)
                         ++|++++ .++.|.+
T Consensus       288 ---k~l~va~~~~~~v~v  302 (333)
T d1ri6a_         288 ---KYLIAAGQKSHHISV  302 (333)
T ss_dssp             ---SEEEEECTTTCEEEE
T ss_pred             ---CEEEEEECCCCeEEE
Confidence               8877665 4566653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=9.9e-21  Score=155.54  Aligned_cols=256  Identities=11%  Similarity=0.144  Sum_probs=168.4

Q ss_pred             CceeEEEEcCCCcEEEEee-CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNS-NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l   80 (334)
                      +.|..|+|||||++|++++ .|+.|++|++......              ..+..+.     .....|..++++|||++|
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~--------------~~~~~~~-----~~~~~p~~l~~spDg~~l   97 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA--------------LTFAAES-----ALPGSLTHISTDHQGQFV   97 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC--------------EEEEEEE-----ECSSCCSEEEECTTSSEE
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc--------------EEEeeec-----ccCCCceEEEEcCCCCEE
Confidence            3578999999999996655 5899999999876543              1111111     111223446668999999


Q ss_pred             EEeeC-CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecc-cccc
Q psy2305          81 LCSSM-YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNL-KPWF  156 (334)
Q Consensus        81 ~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~-~~~~  156 (334)
                      ++++. ++.+.+|+..............+..   .+.++.++|++++++.+.  +..+.+|+............. ....
T Consensus        98 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  174 (333)
T d1ri6a_          98 FVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD---GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV  174 (333)
T ss_dssp             EEEETTTTEEEEEEEETTEEEEEEEEECCCT---TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS
T ss_pred             eecccCCCceeeeccccccceecccccCCCc---cceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeee
Confidence            88875 6688999887666544443222222   678899999999988775  678999998864333221100 1222


Q ss_pred             cccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCce----Eeec------cCCCCeEEEEEccCCcEEEeeecCCCeE
Q psy2305         157 RKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPL----FFLK------GHNGGITHLEFSSNGILLFSGARKDCEI  226 (334)
Q Consensus       157 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~------~~~~~i~~~~~~~~~~~l~~~~~~d~~i  226 (334)
                      .......++|++++...+.+....+...+++.......    ..+.      ........+++++++++++.....++.+
T Consensus       175 ~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~  254 (333)
T d1ri6a_         175 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI  254 (333)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             cCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeE
Confidence            34556889999999833444556678888887543211    1111      1234567889999999877766478899


Q ss_pred             EEEEccCCCccceeecccccCCceEEEEecCCCceEEeee-cCCcEEEEeC--CCC
Q psy2305         227 ICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGN-TNGDLSIWNV--NTS  279 (334)
Q Consensus       227 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~  279 (334)
                      .+|++...+..............+..++|+|||++|++++ .++.|++|++  +++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG  310 (333)
T d1ri6a_         255 TVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG  310 (333)
T ss_dssp             EEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred             EEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCC
Confidence            9999987444333332222344566789999999887765 4689999955  454

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=2.9e-21  Score=159.40  Aligned_cols=253  Identities=13%  Similarity=0.052  Sum_probs=170.9

Q ss_pred             eeEEEEcCCCcEEE-EeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           4 EEDVDEAPDGTCLL-TNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         4 V~~~~~sp~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      +.+++|+|||++++ ++..++.|++||+.+++...              .+..  ..........|..++++|||+++++
T Consensus        42 p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~--------------~~~~--~~~~~~~~~~~~~v~~s~DG~~l~v  105 (346)
T d1jmxb_          42 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF--------------HANL--SSVPGEVGRSMYSFAISPDGKEVYA  105 (346)
T ss_dssp             SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE--------------EEES--CCSTTEEEECSSCEEECTTSSEEEE
T ss_pred             cceEEECCCCCEEEEEECCCCcEEEEeCccCeeee--------------eecc--cccccccCCceEEEEEecCCCEEEE
Confidence            56899999999875 55578999999999987652              2211  1112233345667788999999887


Q ss_pred             ee------------CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeee
Q psy2305          83 SS------------MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSR  150 (334)
Q Consensus        83 ~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~  150 (334)
                      ++            .++.+.+|+..+++....+..+....   .+..+.+++++..++.+  +.+.+|++.+ ++.....
T Consensus       106 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~  179 (346)
T d1jmxb_         106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMRAADDGSLYVAG--PDIYKMDVKT-GKYTVAL  179 (346)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEEECTTSCEEEES--SSEEEECTTT-CCEEEEE
T ss_pred             EecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccC---ceEEEEecCCCEEEEeC--CcceEEEccC-CCEEEEE
Confidence            65            35678888887776544333221111   45677788888766543  4588899876 4444322


Q ss_pred             cccccccccceEEEEEcCCCC-------------------------cEEEEeecCCeEEEEECCCCCceEe-eccCCCCe
Q psy2305         151 NLKPWFRKNIVSAIAINPVHP-------------------------DICALGTYSKIIGLFSDSDGRPLFF-LKGHNGGI  204 (334)
Q Consensus       151 ~~~~~~~~~~v~~~~~~~~~~-------------------------~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~i  204 (334)
                      .    .+ .....+.++|++.                         ..++++..+..+.+||+.++..... +..+...+
T Consensus       180 ~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (346)
T d1jmxb_         180 P----LR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY  254 (346)
T ss_dssp             C----ST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             e----cC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeeccccee
Confidence            1    11 1111222222222                         1344555667789999988765544 45677888


Q ss_pred             EEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCC
Q psy2305         205 THLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSS  284 (334)
Q Consensus       205 ~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  284 (334)
                      ..+.+++++.+++...  ++.+++||..+ ++.+..+..   ...+.+++|+|||++|++++.|+.|++||++++     
T Consensus       255 ~~~~~~~~~~~~~~~~--~~~v~v~d~~~-~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~-----  323 (346)
T d1jmxb_         255 FTGLRSPKDPNQIYGV--LNRLAKYDLKQ-RKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-----  323 (346)
T ss_dssp             EEEEECSSCTTEEEEE--ESEEEEEETTT-TEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT-----
T ss_pred             EEEEEeCCCCEEEEec--CCeEEEEECCC-CcEEEEEcC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC-----
Confidence            9999999998888776  67899999987 666655542   345778999999999999999999999999998     


Q ss_pred             CCccccccccceecccc
Q psy2305         285 PYEESVQEPLYKFSAHQ  301 (334)
Q Consensus       285 ~~~~~~~~~~~~~~~~~  301 (334)
                             +.+..+..+.
T Consensus       324 -------~~i~~i~~p~  333 (346)
T d1jmxb_         324 -------EKVKNIKLPG  333 (346)
T ss_dssp             -------EEEEEEECSS
T ss_pred             -------CEEEEEECCC
Confidence                   6666665443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.87  E-value=4.1e-19  Score=148.30  Aligned_cols=260  Identities=9%  Similarity=-0.032  Sum_probs=177.7

Q ss_pred             EEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305           6 DVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~   75 (334)
                      .++|+|||++|++++          .++.|++||..+++..              ..+.. +..........|..+.|++
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~s~  134 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI--------------ADIEL-PDAPRFDVGPYSWMNANTP  134 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEE--------------EEEec-CCcceeEeccCCCcEEEEe
Confidence            689999999998875          4578999999999876              23322 2344445556667788899


Q ss_pred             CCcEEEEee--CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEE-Eee-CCcEEEEEcCCCCCeeeeec
Q psy2305          76 FTSYFLCSS--MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AGF-LSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        76 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~~  151 (334)
                      +++.++...  .++.+.+|+....+......         .+.++.++|+++.++ +.+ |+.+.+|+... +.......
T Consensus       135 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~-~~~~~~~~  204 (373)
T d2madh_         135 NNADLLFFQFAAGPAVGLVVQGGSSDDQLLS---------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG-GAAGAGLV  204 (373)
T ss_pred             CCCcEEEEEEcCCCceEEeeccCCeEEEEec---------cceeEEEecCCCcEEEEEcCCCeEEEEEcCC-ceeeEEEe
Confidence            999876654  45688999988877655443         346889999998765 444 99999999885 33332211


Q ss_pred             ccc--cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe--eccC----------CCCeEEEEEccCCcEEE
Q psy2305         152 LKP--WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF--LKGH----------NGGITHLEFSSNGILLF  217 (334)
Q Consensus       152 ~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~----------~~~i~~~~~~~~~~~l~  217 (334)
                      ...  .........+.+.+++.  ++..+.++.+.+|+..++.....  +..+          ......++++|++..++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  282 (373)
T d2madh_         205 GAMLTAAQNLLTQPAQANKSGR--IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eeccccCccceeeeEEECCCce--EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEE
Confidence            011  12222334556666664  55566789999999876643221  1111          12334456666666544


Q ss_pred             ----------eeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCce--EEeeecCCcEEEEeCCCCCCCCCC
Q psy2305         218 ----------SGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNY--LLSGNTNGDLSIWNVNTSNLPSSP  285 (334)
Q Consensus       218 ----------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~  285 (334)
                                ... .++.+.+||..+ ++.+..+..   ...+..++|+|||+.  +++++.|+.|++||+.++      
T Consensus       283 ~~~~~~~~~~~~~-~~~~v~~~d~~t-~~~~~~~~~---~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg------  351 (373)
T d2madh_         283 LLTSEQSAWKLHA-AAKEVTSVTGLV-GQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG------  351 (373)
T ss_pred             EecCCCceEEeec-CCCeEEEEECCC-CcEEEEecC---CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC------
Confidence                      344 567899999987 666666542   455778999999984  467888999999999999      


Q ss_pred             Cccccccccceecccccccceeee
Q psy2305         286 YEESVQEPLYKFSAHQDCTNGVRW  309 (334)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~i~~~~~  309 (334)
                            +.+..+..+....+.+++
T Consensus       352 ------~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         352 ------DQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             ------CEEEEECCCCCCCcEEEE
Confidence                  778888877777777776

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=2.2e-20  Score=154.95  Aligned_cols=262  Identities=14%  Similarity=0.097  Sum_probs=175.8

Q ss_pred             eEEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceec
Q psy2305           5 EDVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSID   74 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s   74 (334)
                      ..++|||||++|++.+          .|+.|++||..+++...              .+..+ ..........|..++|+
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~s  114 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA--------------DIELP-DAPRFLVGTYPWMTSLT  114 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE--------------EEEET-TCCCCCBSCCGGGEEEC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEE--------------EEecC-CcceeecCCCCceEEEe
Confidence            4689999999887643          47899999999988763              22211 11112222345567789


Q ss_pred             CCCcEEEEee--CCCcEEEEeCCCCeeeEEEcCccccc--cccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeee
Q psy2305          75 GFTSYFLCSS--MYAPIHLWDSVGGEIKATYRPYNQVD--EVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECV  148 (334)
Q Consensus        75 ~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~  148 (334)
                      |+++.+++++  .+..+.+|+..+++.+..+.......  .......+.+++|++.++...  ++.+.+++... .    
T Consensus       115 ~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~-~----  189 (355)
T d2bbkh_         115 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV-F----  189 (355)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC-C----
T ss_pred             cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc-c----
Confidence            9999887764  45678999999999887776533210  011334567788887777553  56666666553 1    


Q ss_pred             eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe--eccC----------CCCeEEEEEccCCcEE
Q psy2305         149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF--LKGH----------NGGITHLEFSSNGILL  216 (334)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~----------~~~i~~~~~~~~~~~l  216 (334)
                           ...+...+....+.+++. .++.++.++.+++|++..++....  ...+          ......++++|++..+
T Consensus       190 -----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~  263 (355)
T d2bbkh_         190 -----HPEDEFLINHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI  263 (355)
T ss_dssp             -----SCTTSCBCSCCEEETTTT-EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             -----cceecceeeeccccCCCC-eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeE
Confidence                 122333445567777877 888889999999999987654221  1111          1223458899999988


Q ss_pred             EeeecCC----------CeEEEEEccCCCccceeecccccCCceEEEEecCCCc--eEEeeecCCcEEEEeCCCCCCCCC
Q psy2305         217 FSGARKD----------CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN--YLLSGNTNGDLSIWNVNTSNLPSS  284 (334)
Q Consensus       217 ~~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~  284 (334)
                      +... .+          ..|.+||..+ ++.+..+..   ...+.+++|+|||+  ++++++.|+.|++||++++     
T Consensus       264 ~~~~-~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-----  333 (355)
T d2bbkh_         264 YLLV-DQRDEWRHKTASRFVVVLDAKT-GERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-----  333 (355)
T ss_dssp             EEEE-EECCTTCTTSCEEEEEEEETTT-CCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC-----
T ss_pred             EEEe-ccCCceeecCCCCeEEEEeCCC-CcEEEEecC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-----
Confidence            7665 23          4799999998 666666653   33466789999997  3456677999999999998     


Q ss_pred             CCccccccccceecccccccceeee
Q psy2305         285 PYEESVQEPLYKFSAHQDCTNGVRW  309 (334)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~i~~~~~  309 (334)
                             +.+..+..+......+.+
T Consensus       334 -------~~~~~i~~~G~~p~~i~~  351 (355)
T d2bbkh_         334 -------EELRSVNQLGHGPQVITT  351 (355)
T ss_dssp             -------CEEEEECCCCSSCCEEEC
T ss_pred             -------CEEEEEeCcCCCccEEEe
Confidence                   677777766554555554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.87  E-value=5.3e-19  Score=147.60  Aligned_cols=276  Identities=11%  Similarity=-0.058  Sum_probs=184.2

Q ss_pred             ceeEEEEcCCCcEEEEe-----eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCC
Q psy2305           3 IEEDVDEAPDGTCLLTN-----SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFT   77 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~-----~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~   77 (334)
                      ++.+++++|||+.+++.     +..+.|.+||..+++..              ..+..+.   ...       ++|+|||
T Consensus        22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~--------------~~~~~~~---~~~-------~a~SpDG   77 (373)
T d2madh_          22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL--------------GHVNGGF---LPN-------PVAAHSG   77 (373)
T ss_pred             CccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEE--------------EEEeCCC---Ccc-------EEEcCCC
Confidence            57889999999998764     23467999999998876              2333221   113       4458899


Q ss_pred             cEEEEee----------CCCcEEEEeCCCCeeeEEEcCcccccc--ccceeEEEEcCCCCEEEEee---CCcEEEEEcCC
Q psy2305          78 SYFLCSS----------MYAPIHLWDSVGGEIKATYRPYNQVDE--VTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDR  142 (334)
Q Consensus        78 ~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~  142 (334)
                      ++|++++          .++.|.+||..+++.+..+..+.....  ......+.|+++++.++...   ++.+.+|+...
T Consensus        78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~  157 (373)
T d2madh_          78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG  157 (373)
T ss_pred             CEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC
Confidence            9998875          457899999999998877765432110  01235688999998776543   57888998875


Q ss_pred             CCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC------CCCeEEEEEccCCcEE
Q psy2305         143 PGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH------NGGITHLEFSSNGILL  216 (334)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l  216 (334)
                       .+..        .+.....++.++|+++..+++.+.|+.+.+|+...++.......+      ......+.+++++.++
T Consensus       158 -~~~~--------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (373)
T d2madh_         158 -SSDD--------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV  228 (373)
T ss_pred             -CeEE--------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE
Confidence             2222        233446788999999867788899999999999887766654322      2223455666666555


Q ss_pred             EeeecCCCeEEEEEccCCCccce--eeccc--------ccCCceEEEEecCCCceEE----------eeecCCcEEEEeC
Q psy2305         217 FSGARKDCEIICWDLRNPGCILH--TFPRQ--------VSTNQRVYFDLTSCSNYLL----------SGNTNGDLSIWNV  276 (334)
Q Consensus       217 ~~~~~~d~~i~iwd~~~~~~~~~--~~~~~--------~~~~~~~~~~~s~~~~~l~----------~~~~dg~i~iwd~  276 (334)
                      + .+ .++.+.+|+... .....  .....        ........+++++++..++          ....++.+.+||.
T Consensus       229 ~-~~-~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~  305 (373)
T d2madh_         229 W-PV-YSGKILQADISA-AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG  305 (373)
T ss_pred             E-ec-CCceEEEEEcCC-CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEEC
Confidence            4 44 588999999876 22111  11110        0111222345566665443          4455678999999


Q ss_pred             CCCCCCCCCCccccccccceecccccccceeeeccCCCccccee--eEEeeecceeeee
Q psy2305         277 NTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV--ADATCSGQITNVK  333 (334)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~--~l~t~~~d~~i~~  333 (334)
                      .++            +.+..+. +...+..++|  +|||    +  ++++++.|++|++
T Consensus       306 ~t~------------~~~~~~~-~~~~~~~~a~--spDG----~~~l~vt~~~d~~v~v  345 (373)
T d2madh_         306 LVG------------QTSSQIS-LGHDVDAISV--AQDG----GPDLYALSAGTEVLHI  345 (373)
T ss_pred             CCC------------cEEEEec-CCCCeeEEEE--CCCC----CEEEEEEeCCCCeEEE
Confidence            997            4555544 4567899999  9999    7  3578899998875

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=6.8e-19  Score=145.83  Aligned_cols=282  Identities=12%  Similarity=-0.035  Sum_probs=177.7

Q ss_pred             CceeEEEEcCCCcEEEEee-----CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC
Q psy2305           2 DIEEDVDEAPDGTCLLTNS-----NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF   76 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~-----~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~   76 (334)
                      +|+.-.+.+|||+++++..     .++.|.+||..+++..              ..+..+   ....+       +||||
T Consensus         2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~--------------~~~~~g---~~~~~-------a~SpD   57 (355)
T d2bbkh_           2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI--------------GMIDGG---FLPNP-------VVADD   57 (355)
T ss_dssp             CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE--------------EEEEEC---SSCEE-------EECTT
T ss_pred             CCcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEE--------------EEEECC---CCCce-------EEcCC
Confidence            3455567799999987653     4568999999998865              233322   22234       45889


Q ss_pred             CcEEEEee----------CCCcEEEEeCCCCeeeEEEcCccccc--cccceeEEEEcCCCCEEEEee---CCcEEEEEcC
Q psy2305          77 TSYFLCSS----------MYAPIHLWDSVGGEIKATYRPYNQVD--EVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTD  141 (334)
Q Consensus        77 ~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~  141 (334)
                      |++|++++          .|+.|++||+.+++.+..+..+....  .......++|+|++++++..+   +..+.+|+..
T Consensus        58 g~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~  137 (355)
T d2bbkh_          58 GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE  137 (355)
T ss_dssp             SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred             CCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecC
Confidence            99887643          47899999999999887765432111  011345789999999888653   6789999998


Q ss_pred             CCCCeeeeecccc---cccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEe
Q psy2305         142 RPGRECVSRNLKP---WFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       142 ~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  218 (334)
                      + ++.........   .........+.+++++..+++....++.+.+++......     .+...+....+.+++..++.
T Consensus       138 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  211 (355)
T d2bbkh_         138 G-KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVW  211 (355)
T ss_dssp             T-TEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEE
T ss_pred             C-CcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEE
Confidence            6 44443211100   001123345666777763333344455566666544332     12333445677888888888


Q ss_pred             eecCCCeEEEEEccCCCcc-ceeecccc--------cCCceEEEEecCCCceEEeeecC----------CcEEEEeCCCC
Q psy2305         219 GARKDCEIICWDLRNPGCI-LHTFPRQV--------STNQRVYFDLTSCSNYLLSGNTN----------GDLSIWNVNTS  279 (334)
Q Consensus       219 ~~~~d~~i~iwd~~~~~~~-~~~~~~~~--------~~~~~~~~~~s~~~~~l~~~~~d----------g~i~iwd~~~~  279 (334)
                      ++ .++.+++|++...... +.....+.        .......+++++++..++....+          ..|.+||..++
T Consensus       212 ~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~  290 (355)
T d2bbkh_         212 PT-YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG  290 (355)
T ss_dssp             EB-TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             ec-CCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC
Confidence            88 8999999999862211 11111100        01112236788999888765443          36999999997


Q ss_pred             CCCCCCCccccccccceecccccccceeeeccCCCccccee--eEEeeecceeeee
Q psy2305         280 NLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV--ADATCSGQITNVK  333 (334)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~--~l~t~~~d~~i~~  333 (334)
                                  +.+..+.. ...+.+++|  +|||    +  ++++++.|+.|.+
T Consensus       291 ------------~~~~~~~~-~~~~~~~a~--spDG----~~~l~v~~~~d~~i~v  327 (355)
T d2bbkh_         291 ------------ERLAKFEM-GHEIDSINV--SQDE----KPLLYALSTGDKTLYI  327 (355)
T ss_dssp             ------------CEEEEEEE-EEEECEEEE--CCSS----SCEEEEEETTTTEEEE
T ss_pred             ------------cEEEEecC-CCCEEEEEE--cCCC----CeEEEEEECCCCEEEE
Confidence                        55555553 456889999  9999    7  4566777888764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.74  E-value=3.2e-16  Score=130.34  Aligned_cols=288  Identities=7%  Similarity=-0.059  Sum_probs=177.7

Q ss_pred             EEEeeCCCeEEEEECCCCCceeeeeCCCC---CCCCcc-------------eeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305          16 LLTNSNDNHLRTFDLPSELHCKSVWRPSN---QRPKLN-------------YTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus        16 l~~~~~d~~v~iw~~~~~~~~~~~~~~~~---~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      +++++.+|.|++|++.+++....+.-...   ......             ..-..||. ...       ....+|||++
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP-~~s-------~t~gtpDGr~   85 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHP-HIS-------MTDGRYDGKY   85 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCC-EEE-------EETTEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCC-Ccc-------eecccCCCCE
Confidence            56778999999999999887765432100   000000             00111121 111       1334789999


Q ss_pred             EEEee-CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEE--EEeeCCcE------------------EEE
Q psy2305          80 FLCSS-MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKI--YAGFLSEV------------------KIF  138 (334)
Q Consensus        80 l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~d~~i------------------~i~  138 (334)
                      |++.. .+++|.++|+.+++....+......    .+..++|+|+|+.+  ++..+..+                  ..+
T Consensus        86 lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~----gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~i  161 (441)
T d1qnia2          86 LFINDKANTRVARIRLDIMKTDKITHIPNVQ----AIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAI  161 (441)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTCC----CEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEE
T ss_pred             EEEEcCCCCEEEEEECCCCcEeeEEecCCCC----CccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEee
Confidence            86664 6779999999999988776542221    68899999999854  33334443                  346


Q ss_pred             EcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC--------------------------------------
Q psy2305         139 STDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS--------------------------------------  180 (334)
Q Consensus       139 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------------------------------  180 (334)
                      |..+ .....+    .. -......++++|+|+ ++++.+.+                                      
T Consensus       162 D~~t-~~v~~q----I~-v~~~p~~v~~spdGk-~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v  234 (441)
T d1qnia2         162 DAET-MDVAWQ----VI-VDGNLDNTDADYTGK-YATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTI  234 (441)
T ss_dssp             ETTT-CSEEEE----EE-ESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCC
T ss_pred             cCcc-ceeeEE----Ee-cCCCccceEECCCCC-EEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEe
Confidence            6654 333322    11 123567889999999 66665533                                      


Q ss_pred             ---CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc-------cceeecccc-cCCc
Q psy2305         181 ---KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC-------ILHTFPRQV-STNQ  249 (334)
Q Consensus       181 ---g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~-~~~~  249 (334)
                         +.+.+++....+.+..+..... ...+.++|||+++++++..++++.+||+.+..+       ....+..+. ..-.
T Consensus       235 ~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glg  313 (441)
T d1qnia2         235 GDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLG  313 (441)
T ss_dssp             TTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSC
T ss_pred             CCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccC
Confidence               2334444444455555554443 468999999999877655899999999875111       111111111 1223


Q ss_pred             eEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccce-----ecccccccceeeeccCCCcccceeeEEe
Q psy2305         250 RVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK-----FSAHQDCTNGVRWKHHKFERDLLVADAT  324 (334)
Q Consensus       250 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~s~~~~~~~~~l~t  324 (334)
                      ....+|+++|..+.+...|.+|..|++.......  ..+.....+..     ..+|...+.+.++  +|||    ++|++
T Consensus       314 plh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~--~~~~~~~v~~~~~v~y~~GH~~~~~~~t~--~pdG----k~l~s  385 (441)
T d1qnia2         314 PLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHY--NGDRVNYIRQKLDVQYQPGHNHASLTESR--DADG----KWLVV  385 (441)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHH--TTCCCCCEEEEEECSSCEEEEEETTTTST--TCCC----CEEEE
T ss_pred             cccceecCCceEEEcccccceEEEeccchhhhhh--ccCCCceeEeccccccCCCCCcccccccc--CCCC----cEEEe
Confidence            4556899999988899999999999975210000  00000022222     2688888999999  9999    99999


Q ss_pred             e---ecceee
Q psy2305         325 C---SGQITN  331 (334)
Q Consensus       325 ~---~~d~~i  331 (334)
                      +   |.|+-+
T Consensus       386 ~~k~s~dr~~  395 (441)
T d1qnia2         386 LSKFSKDRFL  395 (441)
T ss_dssp             EESCCGGGSC
T ss_pred             cCccccccCc
Confidence            9   666544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.9e-16  Score=131.88  Aligned_cols=244  Identities=7%  Similarity=-0.082  Sum_probs=151.0

Q ss_pred             eEEEEcCCCcEEEEee----------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceec
Q psy2305           5 EDVDEAPDGTCLLTNS----------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSID   74 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s   74 (334)
                      ..++|+|||++|++.+          .|+.|++||..+++...              .+..+. ......-..|..++|+
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~--------------~i~~p~-~~~~~~g~~p~~~a~S  132 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA--------------DIELPD-APRFSVGPRVHIIGNC  132 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE--------------EEEETT-SCSCCBSCCTTSEEEC
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEee--------------eecCCc-cceecccCCccceEEC
Confidence            3588999999888754          47789999999988763              222111 1111111124456779


Q ss_pred             CCCcEEEEee-CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC-CCEEEEee-CCcEEEEEcCCCCCeeeeec
Q psy2305          75 GFTSYFLCSS-MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD-GNKIYAGF-LSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        75 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~  151 (334)
                      |||++|+++. .++.+.+||+.+++....+......         .+.|+ ...++..+ ||.+..+++...+.......
T Consensus       133 pDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~  203 (368)
T d1mdah_         133 ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF---------HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC---------CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc---------eEccCCCceEEEEcCCCCEEEEEecCCceeeeeee
Confidence            9999998776 5789999999999988877653321         11122 22333333 67777777664333222100


Q ss_pred             c-cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec--c----------CCCCeEEEEEccCCcEEEe
Q psy2305         152 L-KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK--G----------HNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       152 ~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~----------~~~~i~~~~~~~~~~~l~~  218 (334)
                      . ....+...+..+.+.+++. .+.+  ..+.+++++...+.......  .          .......++++|++..++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~g~-~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v  280 (368)
T d1mdah_         204 AQCTGAQNCSSQAAQANYPGM-LVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             CCSCTTSCBCSCCEEETTTTE-EEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             cccccccccceeecccccCcE-EEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEE
Confidence            0 1233444556677888875 4443  35667777765554332211  1          1112235788999887766


Q ss_pred             eecC--------CCeEEEEEccCCCccceeecccccCCceEEEEecCCCce--EEeeecCCcEEEEeCCCC
Q psy2305         219 GARK--------DCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNY--LLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       219 ~~~~--------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--l~~~~~dg~i~iwd~~~~  279 (334)
                      ....        ...|.+||..+ ++.+..+..   ...+..++|+|||+.  ++++..++.|++||..++
T Consensus       281 ~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~---~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         281 LTVEHSRSCLAAAENTSSVTASV-GQTSGPISN---GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSS-CCEEECCEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             EecCCCceeecCCceEEEEECCC-CcEeEEecC---CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            5311        23588999988 666655543   345667899999973  456667899999999998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.68  E-value=5.4e-14  Score=116.34  Aligned_cols=254  Identities=11%  Similarity=0.050  Sum_probs=152.1

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEE--E
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYF--L   81 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l--~   81 (334)
                      +..|+|+|++++|++... +.+..|.+......              .......      ..-.|..+.++++++.+  +
T Consensus        42 ~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~--------------~~~~~~~------~~~~p~~v~~~~~~~~~~v~  100 (365)
T d1jofa_          42 ISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEI--------------VHEASHP------IGGHPRANDADTNTRAIFLL  100 (365)
T ss_dssp             CSEEEECTTSSEEEEEEB-TEEEEEEEEETTEE--------------EEEEEEE------CCSSGGGGCTTSCCEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCe--------------EEEeeec------CCCCcEEEEECCCCCEEEEE
Confidence            456999999999988764 56888877643322              0111111      11246678889999853  3


Q ss_pred             Eee-CCCcEEEEeCCC-CeeeEE------------EcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCC
Q psy2305          82 CSS-MYAPIHLWDSVG-GEIKAT------------YRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGR  145 (334)
Q Consensus        82 ~~~-~d~~i~iwd~~~-~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~  145 (334)
                      ++. ..+.|..+.+.. +.....            ...... .....++++.|+|||++++++.  ...|.+|+....+.
T Consensus       101 ~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~  179 (365)
T d1jofa_         101 AAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY-QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE  179 (365)
T ss_dssp             ECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             EecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCccc-CCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc
Confidence            332 235565554321 111111            110000 1111478999999999999775  56888998776444


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee--c-----------------cCCCCeEE
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--K-----------------GHNGGITH  206 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~-----------------~~~~~i~~  206 (334)
                      ................+.++|+|+++.+.++...+++|.+|++..++.....  .                 .+......
T Consensus       180 ~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (365)
T d1jofa_         180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV  259 (365)
T ss_dssp             EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred             eeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccc
Confidence            4322111222334578899999999934455667899999998765432111  0                 11123567


Q ss_pred             EEEccCCcEEEeeecCCC-----eEEEEEccCCCccceeec---ccccCCceEEEEecC-CCceEEee-ecCCcEEEEeC
Q psy2305         207 LEFSSNGILLFSGARKDC-----EIICWDLRNPGCILHTFP---RQVSTNQRVYFDLTS-CSNYLLSG-NTNGDLSIWNV  276 (334)
Q Consensus       207 ~~~~~~~~~l~~~~~~d~-----~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~s~-~~~~l~~~-~~dg~i~iwd~  276 (334)
                      +.++|+|++|+++.|.+.     .|..|++...+.......   ..........++++| +|++|+++ ..++.|.+|++
T Consensus       260 i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         260 CALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             eEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            899999999998864333     377777765333221111   111234456688998 78988766 45789999988


Q ss_pred             CCC
Q psy2305         277 NTS  279 (334)
Q Consensus       277 ~~~  279 (334)
                      ...
T Consensus       340 ~~~  342 (365)
T d1jofa_         340 KDE  342 (365)
T ss_dssp             ETT
T ss_pred             eCC
Confidence            654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=4.3e-15  Score=123.45  Aligned_cols=273  Identities=8%  Similarity=-0.115  Sum_probs=163.7

Q ss_pred             eEEEEcCCCcEE--E-EeeCCC--eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           5 EDVDEAPDGTCL--L-TNSNDN--HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         5 ~~~~~sp~~~~l--~-~~~~d~--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      ..++..++++..  + ....++  .|.+||..+++..              ..+..+..   ..       ++++|||+.
T Consensus        23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~--------------~~~~~~~~---~~-------~a~spDg~~   78 (368)
T d1mdah_          23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTL--------------GHSLGAFL---SL-------AVAGHSGSD   78 (368)
T ss_dssp             BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEE--------------EEEEECTT---CE-------EEECTTSSC
T ss_pred             cccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEE--------------EEEeCCCC---Cc-------ceECCCCCE
Confidence            345567777753  2 233444  4667788888765              23333221   12       344889998


Q ss_pred             EEEee----------CCCcEEEEeCCCCeeeEEEcCccccc--cccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCC
Q psy2305          80 FLCSS----------MYAPIHLWDSVGGEIKATYRPYNQVD--EVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGR  145 (334)
Q Consensus        80 l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~  145 (334)
                      |++++          .|+.|.+||..+++.+..+..+....  .......++|+|||++|+++.  ++.+.+||+.+ ++
T Consensus        79 i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~-~~  157 (368)
T d1mdah_          79 FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG-AS  157 (368)
T ss_dssp             EEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT-TE
T ss_pred             EEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCC-Cc
Confidence            88754          46789999999999888775432211  011345799999999998764  79999999996 44


Q ss_pred             eeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEe------eccCCCCeEEEEEccCCcEEEee
Q psy2305         146 ECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFF------LKGHNGGITHLEFSSNGILLFSG  219 (334)
Q Consensus       146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~~~~i~~~~~~~~~~~l~~~  219 (334)
                      ....    ...+...    .+.|.++..++..+.||.+.++++........      +..+...+....+.+++..+.+.
T Consensus       158 ~~~~----~~~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (368)
T d1mdah_         158 DDQL----TKSASCF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             EEEE----EECSSCC----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             EeEE----eeccCcc----eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec
Confidence            4442    2222111    12223333666677788888887755433221      22334445567788888666543


Q ss_pred             ecCCCeEEEEEccCCCccceeec--c--------cccCCceEEEEecCCCceEEeeecC---------CcEEEEeCCCCC
Q psy2305         220 ARKDCEIICWDLRNPGCILHTFP--R--------QVSTNQRVYFDLTSCSNYLLSGNTN---------GDLSIWNVNTSN  280 (334)
Q Consensus       220 ~~~d~~i~iwd~~~~~~~~~~~~--~--------~~~~~~~~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~  280 (334)
                         .+.+++++... ........  .        .........++++|++..++....+         ..|.+||..++ 
T Consensus       230 ---~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~-  304 (368)
T d1mdah_         230 ---ASSILQGDIPA-AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-  304 (368)
T ss_dssp             ---SSCCEEEECCS-SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-
T ss_pred             ---CCCEEEEeecC-CceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC-
Confidence               45566666654 22111110  0        0001111236678888877654332         35899999998 


Q ss_pred             CCCCCCccccccccceecccccccceeeeccCCCccccee--eEEeeecceeeee
Q psy2305         281 LPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV--ADATCSGQITNVK  333 (334)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~--~l~t~~~d~~i~~  333 (334)
                                 +.+..+. +...+.+++|  +||+    +  ++++++.|+.|.+
T Consensus       305 -----------~~~~~~~-~~~~~~~~a~--spDG----~~~ly~s~~~~~~v~v  341 (368)
T d1mdah_         305 -----------QTSGPIS-NGHDSDAIIA--AQDG----ASDNYANSAGTEVLDI  341 (368)
T ss_dssp             -----------CEEECCE-EEEEECEEEE--CCSS----SCEEEEEETTTTEEEE
T ss_pred             -----------cEeEEec-CCCceeEEEE--CCCC----CEEEEEEeCCCCeEEE
Confidence                       5555554 3456889999  9998    6  3566677888764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.63  E-value=1.6e-13  Score=117.74  Aligned_cols=149  Identities=13%  Similarity=0.044  Sum_probs=100.3

Q ss_pred             eEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee
Q psy2305           5 EDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS   84 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~   84 (334)
                      ..+.|.+++++++.  .++.+.+||..+++....+...         .+. .+...|.++.|       ||||++|+.++
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~---------~~~-~~~~~i~~~~~-------SpDg~~i~~~~   80 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENS---------TFD-EFGHSINDYSI-------SPDGQFILLEY   80 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTT---------TTT-TSSSCCCEEEE-------CTTSSEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchh---------hhh-hccCccceeEE-------CCCCCEEEEEE
Confidence            35789999988775  4678999999999865211110         011 12345666555       88999999875


Q ss_pred             C---------CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecc---
Q psy2305          85 M---------YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL---  152 (334)
Q Consensus        85 ~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~---  152 (334)
                      .         ++.+.+||+++++.. .+..+..     .+..+.|||||+.++...++.+.+|+... +........   
T Consensus        81 ~~~~~~r~s~~~~~~l~d~~~~~~~-~l~~~~~-----~~~~~~~SPDG~~ia~~~~~~l~~~~~~~-g~~~~~t~~~~~  153 (470)
T d2bgra1          81 NYVKQWRHSYTASYDIYDLNKRQLI-TEERIPN-----NTQWVTWSPVGHKLAYVWNNDIYVKIEPN-LPSYRITWTGKE  153 (470)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTEEC-CSSCCCT-----TEEEEEECSSTTCEEEEETTEEEEESSTT-SCCEECCSCCBT
T ss_pred             CCcceeeeccCceEEEEECCCCccc-ccccCCc-----cccccccccCcceeeEeecccceEEECCC-CceeeeeeccCC
Confidence            3         467899999988754 3443333     78899999999999998899999999886 433321000   


Q ss_pred             --cc---------cccccceEEEEEcCCCCcEEEEeecC
Q psy2305         153 --KP---------WFRKNIVSAIAINPVHPDICALGTYS  180 (334)
Q Consensus       153 --~~---------~~~~~~v~~~~~~~~~~~~l~~~~~d  180 (334)
                        ..         ....+....+.|+|||+ .|+....|
T Consensus       154 ~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk-~ia~~~~d  191 (470)
T d2bgra1         154 DIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFN  191 (470)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEE
T ss_pred             CcccccccceeeeeeecCCccccEECCCCC-ccceeEec
Confidence              00         01223346688999999 88876543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=4e-11  Score=94.43  Aligned_cols=239  Identities=10%  Similarity=0.072  Sum_probs=149.6

Q ss_pred             eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCCC---cEEEEeCCCCeee
Q psy2305          24 HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMYA---PIHLWDSVGGEIK  100 (334)
Q Consensus        24 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d~---~i~iwd~~~~~~~  100 (334)
                      .|.|.|.+.....               .+.. ....+...+|       ||||+.||......   .+.+.+...+...
T Consensus        20 ~l~i~d~dG~~~~---------------~l~~-~~~~~~sP~w-------SPDGk~IAf~~~~~~~~~~~~~~~~~~~~~   76 (269)
T d2hqsa1          20 ELRVSDYDGYNQF---------------VVHR-SPQPLMSPAW-------SPDGSKLAYVTFESGRSALVIQTLANGAVR   76 (269)
T ss_dssp             EEEEEETTSCSCE---------------EEEE-ESSCEEEEEE-------CTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred             EEEEEcCCCCCcE---------------EEec-CCCceeeeEE-------CCCCCEEEEEEeeccCcceeeeecccCcee
Confidence            5888888766654               3322 3455666677       78999998765433   4666677666554


Q ss_pred             EEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee
Q psy2305         101 ATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT  178 (334)
Q Consensus       101 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  178 (334)
                      ..... ..     ......|+|+|+.++...  ++...++..........    .............+++++...+++..
T Consensus        77 ~~~~~-~~-----~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (269)
T d2hqsa1          77 QVASF-PR-----HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQNLAFTSD  146 (269)
T ss_dssp             EEECC-SS-----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----ECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred             EEeee-ec-----ccccceecCCCCeeeEeeecCCccceeecccccccce----eeeeccccccccccccccccceeccc
Confidence            44332 22     667899999999988553  44444444333122222    23334445556678888874555555


Q ss_pred             cCC--eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEec
Q psy2305         179 YSK--IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLT  256 (334)
Q Consensus       179 ~dg--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s  256 (334)
                      .++  .|.+.++..+.. ..+..+........|+|+++.++..+...+...+|............. .  ........||
T Consensus       147 ~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~--~~~~~~p~~S  222 (269)
T d2hqsa1         147 QAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-S--TFLDETPSLA  222 (269)
T ss_dssp             TTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-C--SSSCEEEEEC
T ss_pred             ccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEee-c--CccccceEEC
Confidence            555  466666655533 344446667788899999998888774556666665554233333222 2  3344567899


Q ss_pred             CCCceEEeeec---CCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCC
Q psy2305         257 SCSNYLLSGNT---NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKF  314 (334)
Q Consensus       257 ~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~  314 (334)
                      |||++|+..+.   ...|+++++..+             ....+....+.+...+|  +|-
T Consensus       223 PDG~~i~f~s~~~~~~~l~~~~~dg~-------------~~~~lt~~~g~~~~p~W--SP~  268 (269)
T d2hqsa1         223 PNGTMVIYSSSQGMGSVLNLVSTDGR-------------FKARLPATDGQVKFPAW--SPY  268 (269)
T ss_dssp             TTSSEEEEEEEETTEEEEEEEETTSC-------------CEEECCCSSSEEEEEEE--CCC
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCC-------------CEEEEeCCCCcEEeEEe--CCC
Confidence            99999876554   346889999875             33455555667888999  883

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=8.5e-13  Score=109.60  Aligned_cols=233  Identities=8%  Similarity=-0.012  Sum_probs=144.8

Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCcccccc-------------------------ccceeEEEEcCCCCEEEEee--C
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDE-------------------------VTHAYSLAFSLDGNKIYAGF--L  132 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------------------------~~~v~~~~~~~~~~~l~~~~--d  132 (334)
                      +++++.+|.|.+|++.+++.++.+........                         ........++|||++|++..  +
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            66778899999999999999888755321100                         01234444579999998764  8


Q ss_pred             CcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCe------------------EEEEECCCCCce
Q psy2305         133 SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKI------------------IGLFSDSDGRPL  194 (334)
Q Consensus       133 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~------------------i~i~d~~~~~~~  194 (334)
                      +.|.++|+.+ .+....   ....+...+..++|+|+++...+++..+..                  +..+|..+.+..
T Consensus        94 ~rVavIDl~t-~k~~~i---i~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~  169 (441)
T d1qnia2          94 TRVARIRLDI-MKTDKI---THIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA  169 (441)
T ss_dssp             TEEEEEETTT-TEEEEE---EECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred             CEEEEEECCC-CcEeeE---EecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence            9999999997 444332   122345678999999999843444333322                  355788887777


Q ss_pred             EeeccCCCCeEEEEEccCCcEEEeeecCCC-----------------------------------------eEEEEEccC
Q psy2305         195 FFLKGHNGGITHLEFSSNGILLFSGARKDC-----------------------------------------EIICWDLRN  233 (334)
Q Consensus       195 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~-----------------------------------------~i~iwd~~~  233 (334)
                      .++... +....+.++|+|+++++.+ .+.                                         .+.+++...
T Consensus       170 ~qI~v~-~~p~~v~~spdGk~a~vt~-~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~  247 (441)
T d1qnia2         170 WQVIVD-GNLDNTDADYTGKYATSTC-YNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE  247 (441)
T ss_dssp             EEEEES-SCCCCEEECSSSSEEEEEE-SCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS
T ss_pred             EEEecC-CCccceEECCCCCEEEEEe-cCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC
Confidence            666533 4567899999999988776 332                                         222222221


Q ss_pred             CCccceeecccccCCceEEEEecCCCceEE-eeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc---ccceeee
Q psy2305         234 PGCILHTFPRQVSTNQRVYFDLTSCSNYLL-SGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD---CTNGVRW  309 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~  309 (334)
                       ...+..+..   ......+.++|||++++ ++..+++|.+||+++....+.-    .......+.++..   .....+|
T Consensus       248 -~~v~~~IPv---gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~----~~~~~~~~~~~~~~glgplh~~f  319 (441)
T d1qnia2         248 -SEFTRYIPV---PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFED----KIELRDTIVAEPELGLGPLHTTF  319 (441)
T ss_dssp             -CSSEEEECC---BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTT----SSCGGGGEEECCBCCSCEEEEEE
T ss_pred             -CceEEEEeC---CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhc----cCCcceEEEeecccccCccccee
Confidence             222333322   22234578999999875 5667899999998763210000    0011122222111   2344589


Q ss_pred             ccCCCcccceeeEEeeecceeee
Q psy2305         310 KHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       310 ~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                        .++|    ..+.+.+.|..|+
T Consensus       320 --d~~g----~~yts~~~ds~v~  336 (441)
T d1qnia2         320 --DGRG----NAYTTLFIDSQVC  336 (441)
T ss_dssp             --CSSS----EEEEEETTTTEEE
T ss_pred             --cCCc----eEEEcccccceEE
Confidence              9999    8888888887664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.51  E-value=8.6e-12  Score=97.92  Aligned_cols=236  Identities=10%  Similarity=0.075  Sum_probs=149.0

Q ss_pred             eeEEEEcCCCcEEEEe-eCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEE
Q psy2305           4 EEDVDEAPDGTCLLTN-SNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLC   82 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~   82 (334)
                      -..++++++|+..++. +..+.+..++.......               .+..   ..    ...|..++++++++++++
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~---------------~~~~---~~----~~~p~gvav~~~g~i~v~   73 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------VLPF---NG----LYQPQGLAVDGAGTVYVT   73 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEE---------------ECCC---CS----CCSCCCEEECTTCCEEEE
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE---------------Eecc---CC----ccCceEEEEcCCCCEEEe
Confidence            3688999999966554 45577777766554432               1110   00    123566777899988777


Q ss_pred             eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeecccccccccce
Q psy2305          83 SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKNIV  161 (334)
Q Consensus        83 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v  161 (334)
                      ....+.+++++-.+.........   ..   .+..+++.++++++++.. ...+..++...  .....   .........
T Consensus        74 d~~~~~i~~~~~~~~~~~~~~~~---~~---~p~~iavd~~g~i~v~d~~~~~~~~~~~~~--~~~~~---~~~~~~~~p  142 (260)
T d1rwia_          74 DFNNRVVTLAAGSNNQTVLPFDG---LN---YPEGLAVDTQGAVYVADRGNNRVVKLAAGS--KTQTV---LPFTGLNDP  142 (260)
T ss_dssp             ETTTEEEEECTTCSCCEECCCCS---CC---SEEEEEECTTCCEEEEEGGGTEEEEECTTC--SSCEE---CCCCSCCSC
T ss_pred             eeeeceeeeeeeccceeeeeeee---ee---ecccccccccceeEeecccccccccccccc--ceeee---eeecccCCc
Confidence            76666666665444443322221   11   578999999998777665 66677777653  22221   111223445


Q ss_pred             EEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceee
Q psy2305         162 SAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTF  241 (334)
Q Consensus       162 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~  241 (334)
                      .+++++++++ ++++...++.|..+|...................+++.++|+++++.. ..+.|..++...  .....+
T Consensus       143 ~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~-~~~~i~~~~~~~--~~~~~~  218 (260)
T d1rwia_         143 DGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGS--TTSTVL  218 (260)
T ss_dssp             CEEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTTEEEEECTTC--SCCEEC
T ss_pred             ceeeecCCCC-EeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec-CCCEEEEEeCCC--CeEEEE
Confidence            7899999998 888888889999999765544333334455678999999998777766 688888887653  222222


Q ss_pred             cccccCCceEEEEecCCCceEEeeecCCcEEEEeCC
Q psy2305         242 PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVN  277 (334)
Q Consensus       242 ~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~  277 (334)
                      .. ..-.....++++++|.++++-..+++|+.++..
T Consensus       219 ~~-~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         219 PF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             CC-CSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             cc-CCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            21 122356778999999887776667777766543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=1.6e-10  Score=91.56  Aligned_cols=246  Identities=13%  Similarity=0.189  Sum_probs=161.5

Q ss_pred             ceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCC-CcEEE
Q psy2305           3 IEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGF-TSYFL   81 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~-~~~l~   81 (334)
                      ....|+++|+|+.+++-..++.|++||.+ ++....+......           ...     ...|..+++.++ +..++
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~-----------~~~-----~~~p~~~~~~~~~~~~~~   86 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-----------DSQ-----LLYPNRVAVVRNSGDIIV   86 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-----------TTC-----BSSEEEEEEETTTTEEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC-----------ccc-----ccccccccccccccccce
Confidence            45789999999988777778899999976 3333211110000           000     001111222223 44444


Q ss_pred             E-eeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeeccccccccc
Q psy2305          82 C-SSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRNLKPWFRKN  159 (334)
Q Consensus        82 ~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  159 (334)
                      + .+.++.|..++. .++....+.... ..   ....+++.++|.++++.. .+.+.+++.+  ++.+...  ....+..
T Consensus        87 ~~~~~~~~i~~~~~-~g~~~~~~~~~~-~~---~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~--g~~~~~~  157 (279)
T d1q7fa_          87 TERSPTHQIQIYNQ-YGQFVRKFGATI-LQ---HPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKF--GCSKHLE  157 (279)
T ss_dssp             EECGGGCEEEEECT-TSCEEEEECTTT-CS---CEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEE--ECTTTCS
T ss_pred             eccCCccccccccc-cccceeecCCCc-cc---ccceeccccCCcEEEEeeccceeeEeccC--Cceeecc--ccccccc
Confidence            3 344557777775 566666664321 11   568999999998777765 6778888766  5554432  1234556


Q ss_pred             ceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec--cCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCcc
Q psy2305         160 IVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK--GHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCI  237 (334)
Q Consensus       160 ~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~  237 (334)
                      ....+++.+++. ++++....+.|++||. +++.+.++.  +.......+++.|+|+.+++-...++.|.+|+..  ++.
T Consensus       158 ~~~~i~~d~~g~-i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--G~~  233 (279)
T d1q7fa_         158 FPNGVVVNDKQE-IFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQL  233 (279)
T ss_dssp             SEEEEEECSSSE-EEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCE
T ss_pred             ccceeeecccee-EEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC--CCE
Confidence            788899999998 8888888899999996 567666663  3445678999999999776644134578898854  666


Q ss_pred             ceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         238 LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      +..+...........+++.|+|.++++ +.+..|++|.....
T Consensus       234 ~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         234 ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence            666654434456778889999986654 57889999998775

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.50  E-value=4.1e-12  Score=108.74  Aligned_cols=138  Identities=14%  Similarity=0.060  Sum_probs=105.1

Q ss_pred             ecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee----------CCcEEEEEcCC
Q psy2305          73 IDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----------LSEVKIFSTDR  142 (334)
Q Consensus        73 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------d~~i~i~d~~~  142 (334)
                      |.++++++..  .++.+.+||+.+++....+..+.-......|.++.|||||++|+.++          ++.+.+||+.+
T Consensus        24 W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~  101 (470)
T d2bgra1          24 WISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK  101 (470)
T ss_dssp             ECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             eCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC
Confidence            4678887754  47889999999998877776554333334789999999999998653          36788999995


Q ss_pred             CCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccC------------------CCCe
Q psy2305         143 PGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGH------------------NGGI  204 (334)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~i  204 (334)
                        ....    .+..+...+..+.|+|||+ .+|.. .++.+++|+..+++..+....+                  .+..
T Consensus       102 --~~~~----~l~~~~~~~~~~~~SPDG~-~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1         102 --RQLI----TEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             --TEEC----CSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             --Cccc----ccccCCccccccccccCcc-eeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence              3344    4677888899999999999 88875 5789999999888766544221                  2234


Q ss_pred             EEEEEccCCcEEEeee
Q psy2305         205 THLEFSSNGILLFSGA  220 (334)
Q Consensus       205 ~~~~~~~~~~~l~~~~  220 (334)
                      ..+.|||||++|+...
T Consensus       174 ~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         174 SALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             BCEEECTTSSEEEEEE
T ss_pred             cccEECCCCCccceeE
Confidence            5688999999999876

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.49  E-value=4.4e-11  Score=98.58  Aligned_cols=245  Identities=9%  Similarity=-0.035  Sum_probs=138.0

Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCCC-CeeeEEEcCccccccccceeEEEEcCCCCEE--EEee--CCcEEEEEcCCCCC
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSVG-GEIKATYRPYNQVDEVTHAYSLAFSLDGNKI--YAGF--LSEVKIFSTDRPGR  145 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~~~--d~~i~i~d~~~~~~  145 (334)
                      +++++++++|.++.. +.+..|.+.. +....... .....   ....+.++++++.+  ++..  .+++..+.+...+.
T Consensus        45 la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~-~~~~~---~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~  119 (365)
T d1jofa_          45 MTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEAS-HPIGG---HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             EEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEE-EECCS---SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             EEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEee-ecCCC---CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCC
Confidence            666899999888765 4577776543 22222211 11111   45678889998854  3332  46666555433222


Q ss_pred             eeeeecc------------cccccccceEEEEEcCCCCcEEEEee-cCCeEEEEECCCCCceE---ee--ccCCCCeEEE
Q psy2305         146 ECVSRNL------------KPWFRKNIVSAIAINPVHPDICALGT-YSKIIGLFSDSDGRPLF---FL--KGHNGGITHL  207 (334)
Q Consensus       146 ~~~~~~~------------~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~---~~--~~~~~~i~~~  207 (334)
                      ......+            ........+.++.|+|+|+ +++++. ....|.+|+......+.   ..  .......+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~-~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i  198 (365)
T d1jofa_         120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV  198 (365)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred             cceeEeeeecceecCcccCcccCCCCcceEEEECCCCC-EEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEE
Confidence            1111000            0111223478999999999 666554 34688888865432221   11  2234568899


Q ss_pred             EEccCCcEEEeeecCCCeEEEEEccCCCcc-ceeecc---------------cccCCceEEEEecCCCceEEeeec----
Q psy2305         208 EFSSNGILLFSGARKDCEIICWDLRNPGCI-LHTFPR---------------QVSTNQRVYFDLTSCSNYLLSGNT----  267 (334)
Q Consensus       208 ~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~-~~~~~~---------------~~~~~~~~~~~~s~~~~~l~~~~~----  267 (334)
                      +|+|+++++++....+++|.+|++...... ......               .........+.++|+|++|+++..    
T Consensus       199 ~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~  278 (365)
T d1jofa_         199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF  278 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred             EECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCC
Confidence            999999998887757899999999762211 111100               001123456789999999987643    


Q ss_pred             --CCcEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCC-CcccceeeEEee-ecceeeee
Q psy2305         268 --NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHK-FERDLLVADATC-SGQITNVK  333 (334)
Q Consensus       268 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~-~~~~~~~~l~t~-~~d~~i~~  333 (334)
                        .+.|..|++......      .....+............+++  +| +|    ++|+++ ..++.|.+
T Consensus       279 ~~~~~i~~~~~~~~g~~------~~~~~~~~~~~~G~~p~~i~~--~p~~G----~~l~va~~~s~~v~v  336 (365)
T d1jofa_         279 ELQGYIAGFKLRDCGSI------EKQLFLSPTPTSGGHSNAVSP--CPWSD----EWMAITDDQEGWLEI  336 (365)
T ss_dssp             TSCCEEEEEEECTTSCE------EEEEEEEECSSCCTTCCCEEE--CTTCT----TEEEEECSSSCEEEE
T ss_pred             ccceEEEEEEecCCCce------eeEeEeeEEEcCCCCccEEEe--cCCCC----CEEEEEeCCCCeEEE
Confidence              234777777653111      000011111122345678999  98 78    776655 56676654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.46  E-value=3e-11  Score=94.74  Aligned_cols=231  Identities=8%  Similarity=0.065  Sum_probs=143.4

Q ss_pred             ecccceecCCCcEEEEe-eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCC
Q psy2305          67 YPKTSSIDGFTSYFLCS-SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPG  144 (334)
Q Consensus        67 ~~~~~~~s~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~  144 (334)
                      .|..++++++|+++++. +..+.+..++...... ..+.. ....   ....++++++++++++.. .+.+++++-.. .
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~-~~~~~-~~~~---~p~gvav~~~g~i~v~d~~~~~i~~~~~~~-~   88 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPF-NGLY---QPQGLAVDGAGTVYVTDFNNRVVTLAAGSN-N   88 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CE-EECCC-CSCC---SCCCEEECTTCCEEEEETTTEEEEECTTCS-C
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE-EEecc-CCcc---CceEEEEcCCCCEEEeeeeeceeeeeeecc-c
Confidence            34556778899976665 4456677766543322 22221 1111   457899999998777766 45555544332 2


Q ss_pred             CeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305         145 RECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                      ....     .........++++.++++ ++++-..+..+..++..................++++.|+|+.+++.. .++
T Consensus        89 ~~~~-----~~~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~-~~~  161 (260)
T d1rwia_          89 QTVL-----PFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT-DNN  161 (260)
T ss_dssp             CEEC-----CCCSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEG-GGT
T ss_pred             eeee-----eeeeeeecccccccccce-eEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecc-ccc
Confidence            2221     122235678999999998 777766777788888655433222222234457899999999777766 688


Q ss_pred             eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceec-ccccc
Q psy2305         225 EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS-AHQDC  303 (334)
Q Consensus       225 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  303 (334)
                      .|..+|....  ....+... .......+++.++|+++++....+.|..++.....             ...+. ..-..
T Consensus       162 ~i~~~d~~~~--~~~~~~~~-~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-------------~~~~~~~~~~~  225 (260)
T d1rwia_         162 RVVKLEAESN--NQVVLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-------------STVLPFTGLNT  225 (260)
T ss_dssp             EEEEECTTTC--CEEECCCS-SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-------------CEECCCCSCCC
T ss_pred             cccccccccc--eeeeeecc-ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-------------EEEEccCCCCC
Confidence            8999987752  22222211 23446778899999988888778888888876541             11121 12235


Q ss_pred             cceeeeccCCCcccceeeEEeeecceeee
Q psy2305         304 TNGVRWKHHKFERDLLVADATCSGQITNV  332 (334)
Q Consensus       304 i~~~~~~~s~~~~~~~~~l~t~~~d~~i~  332 (334)
                      ..+|++  ++++    .++++-..+++|.
T Consensus       226 P~~i~~--d~~g----~l~vad~~~~rI~  248 (260)
T d1rwia_         226 PLAVAV--DSDR----TVYVADRGNDRVV  248 (260)
T ss_dssp             EEEEEE--CTTC----CEEEEEGGGTEEE
T ss_pred             eEEEEE--eCCC----CEEEEECCCCEEE
Confidence            678999  9999    8877766666654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=2.7e-10  Score=90.21  Aligned_cols=235  Identities=11%  Similarity=0.121  Sum_probs=158.5

Q ss_pred             cccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCcccc-ccccceeEEEEcCCC-CEEEEee--CCcEEEEEcCCC
Q psy2305          68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQV-DEVTHAYSLAFSLDG-NKIYAGF--LSEVKIFSTDRP  143 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~--d~~i~i~d~~~~  143 (334)
                      |..++++++++++++-...+.|++||. +|+.+..+...... ........+++.++. ..+++..  ++.|..++..  
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  101 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--  101 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc--
Confidence            445677899998887777789999996 57777766432211 111134566666654 4444443  5677777765  


Q ss_pred             CCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee--ccCCCCeEEEEEccCCcEEEeeec
Q psy2305         144 GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--KGHNGGITHLEFSSNGILLFSGAR  221 (334)
Q Consensus       144 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~  221 (334)
                      +.....   ...........+++.+++. ++++....+.+.+++. +++.+..+  ..+......+++.++++.+++.. 
T Consensus       102 g~~~~~---~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~-  175 (279)
T d1q7fa_         102 GQFVRK---FGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN-  175 (279)
T ss_dssp             SCEEEE---ECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG-
T ss_pred             ccceee---cCCCcccccceeccccCCc-EEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeec-
Confidence            555543   1223345678899999998 7877777888999985 56666665  34556788899999998877777 


Q ss_pred             CCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeec-CCcEEEEeCCCCCCCCCCCccccccccceeccc
Q psy2305         222 KDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNT-NGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAH  300 (334)
Q Consensus       222 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  300 (334)
                      ..+.|++||..  ++.+..+...........+++.++|+++++-.. ++.|.+|+.. +            +.+..+...
T Consensus       176 ~~~~V~~~d~~--G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G------------~~~~~~~~~  240 (279)
T d1q7fa_         176 RAHCVKVFNYE--GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G------------QLISALESK  240 (279)
T ss_dssp             GGTEEEEEETT--CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S------------CEEEEEEES
T ss_pred             cccceeeeecC--CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C------------CEEEEEeCC
Confidence            78999999976  566666643333445678899999997776543 4579999854 4            444444322


Q ss_pred             --ccccceeeeccCCCcccceeeEEeeecceeeee
Q psy2305         301 --QDCTNGVRWKHHKFERDLLVADATCSGQITNVK  333 (334)
Q Consensus       301 --~~~i~~~~~~~s~~~~~~~~~l~t~~~d~~i~~  333 (334)
                        ......+++  .|+|    .++++ +.+.+|++
T Consensus       241 ~~~~~p~~vav--~~dG----~l~V~-~~n~~v~~  268 (279)
T d1q7fa_         241 VKHAQCFDVAL--MDDG----SVVLA-SKDYRLYI  268 (279)
T ss_dssp             SCCSCEEEEEE--ETTT----EEEEE-ETTTEEEE
T ss_pred             CCCCCEeEEEE--eCCC----cEEEE-eCCCeEEE
Confidence              235688999  9999    76554 56777654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.45  E-value=3.1e-10  Score=91.27  Aligned_cols=249  Identities=12%  Similarity=0.106  Sum_probs=152.3

Q ss_pred             ceeEEEEcCCCcEEEEeeC-------CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecC
Q psy2305           3 IEEDVDEAPDGTCLLTNSN-------DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDG   75 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~-------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~   75 (334)
                      ....++|.|+|+++++...       +|+|..||..++...               .+......   .....|..+++++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~---------------~~~~~~~~---~~~g~P~Gl~~~~   80 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT---------------VICKPEVN---GYGGIPAGCQCDR   80 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE---------------EEECCEET---TEECCEEEEEECS
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEE---------------EEECCccc---cCCCcceeEEEeC
Confidence            3567899999997765432       467888898877653               11111111   1111245567788


Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCC--------------cEEEEEcC
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLS--------------EVKIFSTD  141 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~--------------~i~i~d~~  141 (334)
                      +++.++++...+.|...+...+.. ..+...........++.+++.++|++.++...+              .=++|-+.
T Consensus        81 dg~~l~vad~~~~i~~~~~~g~~~-~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~  159 (314)
T d1pjxa_          81 DANQLFVADMRLGLLVVQTDGTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT  159 (314)
T ss_dssp             SSSEEEEEETTTEEEEEETTSCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred             CCCEEEEEECCCeEEEEeCCCcEE-EEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEe
Confidence            998888877767788888765432 222211111111146789999999887764211              11344443


Q ss_pred             CCCCeeeeecccccccccceEEEEEcCCCC----cEEEEeecCCeEEEEECCCCCceE------eecc-CCCCeEEEEEc
Q psy2305         142 RPGRECVSRNLKPWFRKNIVSAIAINPVHP----DICALGTYSKIIGLFSDSDGRPLF------FLKG-HNGGITHLEFS  210 (334)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~------~~~~-~~~~i~~~~~~  210 (334)
                      ..++...     ....-...+.++|+|++.    .++++-+..+.|..||+.....+.      .+.+ .......+++.
T Consensus       160 ~dg~~~~-----~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD  234 (314)
T d1pjxa_         160 TDGQMIQ-----VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD  234 (314)
T ss_dssp             TTSCEEE-----EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred             ecCceeE-----eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEe
Confidence            3243322     222233457889988763    245555678899999876443222      2221 22345689999


Q ss_pred             cCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCce-EEeeecCCcEEEEeCCCC
Q psy2305         211 SNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNY-LLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       211 ~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~  279 (334)
                      ++|+..++.. ..+.|.+||.+. +.....+...  .....+++|.|+++. +++.+.+|.|..+++...
T Consensus       235 ~~GnlyVa~~-~~g~I~~~dp~~-g~~~~~i~~p--~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         235 EDNNLLVANW-GSSHIEVFGPDG-GQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TTCCEEEEEE-TTTEEEEECTTC-BSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             cCCcEEEEEc-CCCEEEEEeCCC-CEEEEEEECC--CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            9999877776 789999999875 5555555432  345678999999974 456667788888887654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.43  E-value=7.1e-11  Score=94.76  Aligned_cols=229  Identities=10%  Similarity=0.004  Sum_probs=144.3

Q ss_pred             cceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeee
Q psy2305          70 TSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECV  148 (334)
Q Consensus        70 ~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~  148 (334)
                      .++++|||+++++...+++|..|+.. ++....... ..     .+.+++|+++|+++++.. ++.+..++.........
T Consensus        32 ~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~-~~-----~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          32 NLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATV-EG-----KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEEC-SS-----EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcC-CC-----CcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence            35568899999998889999999864 443332222 22     789999999999888876 77888887764322222


Q ss_pred             eecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec----------cCCCCeEEEEEccCCcEEEe
Q psy2305         149 SRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK----------GHNGGITHLEFSSNGILLFS  218 (334)
Q Consensus       149 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~l~~  218 (334)
                      ..  ...........+++.++++ ++++.+.++.+..+|...+.....+.          ........+.+..  ..++.
T Consensus       105 ~~--~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~  179 (302)
T d2p4oa1         105 TL--LTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYV  179 (302)
T ss_dssp             EE--EECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEE
T ss_pred             ec--cccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--Cceee
Confidence            11  1123345678999999998 88887888899999987654322111          1123355666653  34444


Q ss_pred             eecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceec
Q psy2305         219 GARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFS  298 (334)
Q Consensus       219 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  298 (334)
                      +....+.|+.++....... ............-.++++++|+++++...+++|..++.....           ..+....
T Consensus       180 ~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~-----------~~~~~~~  247 (302)
T d2p4oa1         180 SNTEKMLLLRIPVDSTDKP-GEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST-----------TIIAQAE  247 (302)
T ss_dssp             EETTTTEEEEEEBCTTSCB-CCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE-----------EEEECGG
T ss_pred             ecCCCCeEEeccccccccc-cccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE-----------EEEEecC
Confidence            4337888988888753322 111111112233458899999988888888999999876531           1222233


Q ss_pred             ccccccceeeeccC---CCcccceeeEEeeecc
Q psy2305         299 AHQDCTNGVRWKHH---KFERDLLVADATCSGQ  328 (334)
Q Consensus       299 ~~~~~i~~~~~~~s---~~~~~~~~~l~t~~~d  328 (334)
                      ..-...++++|  .   +|+    +.|..++..
T Consensus       248 ~~~~~pt~vaf--g~~~~D~----~~Lyvtt~~  274 (302)
T d2p4oa1         248 QGVIGSTAVAF--GQTEGDC----TAIYVVTNG  274 (302)
T ss_dssp             GTCTTEEEEEE--CCSTTTT----TEEEEEECT
T ss_pred             CCCCCceEEEE--cCCCCCC----CEEEEECCC
Confidence            23345788999  6   355    556554443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=5.2e-10  Score=87.87  Aligned_cols=213  Identities=8%  Similarity=-0.035  Sum_probs=126.2

Q ss_pred             ceeEEEEcCCCcEEEEeeCC---CeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcE
Q psy2305           3 IEEDVDEAPDGTCLLTNSND---NHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSY   79 (334)
Q Consensus         3 ~V~~~~~sp~~~~l~~~~~d---~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~   79 (334)
                      .+.+.+|||||++||.....   ..+.+.+...+...                ....+........|       +|+|+.
T Consensus        40 ~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~-------spdg~~   96 (269)
T d2hqsa1          40 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----------------QVASFPRHNGAPAF-------SPDGSK   96 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----------------EEECCSSCEEEEEE-------CTTSSE
T ss_pred             ceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----------------EEeeeeccccccee-------cCCCCe
Confidence            46789999999999876533   35666677666543                22234455666666       779998


Q ss_pred             EEEeeC-CCc--EEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CCc--EEEEEcCCCCCeeeeecc
Q psy2305          80 FLCSSM-YAP--IHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LSE--VKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        80 l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~--i~i~d~~~~~~~~~~~~~  152 (334)
                      ++.... ++.  +..+............. ..     ......+++++..++.. . ++.  |.+.++..  ....    
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~--~~~~----  164 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIRQVTDG-RS-----NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GAPQ----  164 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECCCC-SS-----CEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCCE----
T ss_pred             eeEeeecCCccceeecccccccceeeeec-cc-----cccccccccccccceecccccCCceEeeeeccc--ccce----
Confidence            877553 333  23333333322222221 11     34566788888766644 3 554  44555543  3222    


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeec-CCe--EEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecC--CCeEE
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTY-SKI--IGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARK--DCEII  227 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--d~~i~  227 (334)
                      .............|+|+++ .++..+. .+.  +.+.+...+.  ..+..+........|+|||+.|+..+..  ...|+
T Consensus       165 ~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~  241 (269)
T d2hqsa1         165 RITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGG--VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLN  241 (269)
T ss_dssp             ECCCSSSEEEEEEECTTSS-EEEEEEECSSCEEEEEEETTTCC--EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             eeecccccccccccccccc-eeEEEeecCCceeeeEeeccccc--ceEeecCccccceEECCCCCEEEEEEcCCCCcEEE
Confidence            2344556777889999999 6655544 444  4444544443  2333455667789999999998766522  34678


Q ss_pred             EEEccCCCccceeecccccCCceEEEEecC
Q psy2305         228 CWDLRNPGCILHTFPRQVSTNQRVYFDLTS  257 (334)
Q Consensus       228 iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~  257 (334)
                      ++++..  .....+...  ...+...+|||
T Consensus       242 ~~~~dg--~~~~~lt~~--~g~~~~p~WSP  267 (269)
T d2hqsa1         242 LVSTDG--RFKARLPAT--DGQVKFPAWSP  267 (269)
T ss_dssp             EEETTS--CCEEECCCS--SSEEEEEEECC
T ss_pred             EEECCC--CCEEEEeCC--CCcEEeEEeCC
Confidence            888874  334444443  44566778998

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.43  E-value=1.5e-10  Score=92.82  Aligned_cols=232  Identities=8%  Similarity=-0.036  Sum_probs=144.5

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      +..++++|||+++++...+++|+.|+......                .+ ......+.+++       ++++|+++++.
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~----------------~~-~~~~~~~~gla-------~~~dG~l~v~~   85 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQ----------------IH-ATVEGKVSGLA-------FTSNGDLVATG   85 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCCEE----------------EE-EECSSEEEEEE-------ECTTSCEEEEE
T ss_pred             cCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE----------------EE-EcCCCCcceEE-------EcCCCCeEEEe
Confidence            67899999999999988899998888664422                11 12234455554       48899998888


Q ss_pred             eCCCcEEEEeCCCC--eeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCCCCeeeeec-----cccc
Q psy2305          84 SMYAPIHLWDSVGG--EIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRPGRECVSRN-----LKPW  155 (334)
Q Consensus        84 ~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-----~~~~  155 (334)
                      ..++.+..|+....  ........ ...   .....+++.++++++++.. ++.+..++............     ....
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  161 (302)
T d2p4oa1          86 WNADSIPVVSLVKSDGTVETLLTL-PDA---IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSE  161 (302)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEEC-TTC---SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred             cCCceEEEEEecccccceeecccc-CCc---cccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeecc
Confidence            88888888776432  22222211 111   1678999999998877766 78888888774211111100     0111


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee--ccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--KGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                      ........+.+..  ..++++.+..+.|..++..........  .........+++.++|+++++.. .++.|..++.. 
T Consensus       162 ~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~-~~~~V~~i~p~-  237 (302)
T d2p4oa1         162 SVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH-IYNSVVRIAPD-  237 (302)
T ss_dssp             CCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB-TTCCEEEECTT-
T ss_pred             CcccccccccccC--CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEc-CCCcEEEECCC-
Confidence            1223455666654  326667778899999998654322211  11233456799999999777777 78888888775 


Q ss_pred             CCccceeecccccCCceEEEEe---cCCCceEEeeecC
Q psy2305         234 PGCILHTFPRQVSTNQRVYFDL---TSCSNYLLSGNTN  268 (334)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~---s~~~~~l~~~~~d  268 (334)
                       ++...............+++|   ++|++.|+.++..
T Consensus       238 -G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         238 -RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             -CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence             332222222222345678889   6788877765543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.39  E-value=1.1e-09  Score=88.07  Aligned_cols=237  Identities=11%  Similarity=0.057  Sum_probs=146.4

Q ss_pred             eecCCCcEEEEeeC-------CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-CCcEEEEEcCCC
Q psy2305          72 SIDGFTSYFLCSSM-------YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-LSEVKIFSTDRP  143 (334)
Q Consensus        72 ~~s~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~  143 (334)
                      +++++|+++++...       +++|..||..++........... ...+....++|.++++.|+++. .+.+..++.+. 
T Consensus        24 a~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~-~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g-  101 (314)
T d1pjxa_          24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN-GYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDG-  101 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET-TEECCEEEEEECSSSSEEEEEETTTEEEEEETTS-
T ss_pred             EEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccc-cCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCC-
Confidence            34789998776432       46788999887765443322111 1111457899999999888776 66788888763 


Q ss_pred             CCeeeeecccccccc-cceEEEEEcCCCCcEEEEeec---------------CCeEEEEECCCCCceEeeccCCCCeEEE
Q psy2305         144 GRECVSRNLKPWFRK-NIVSAIAINPVHPDICALGTY---------------SKIIGLFSDSDGRPLFFLKGHNGGITHL  207 (334)
Q Consensus       144 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~i~~~  207 (334)
                       ...........+.. ...+.+++.++|. +.++-..               .|.|..++. .++..... ..-...+.+
T Consensus       102 -~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~-~~~~~pNGi  177 (314)
T d1pjxa_         102 -TFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVD-TAFQFPNGI  177 (314)
T ss_dssp             -CEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEE-EEESSEEEE
T ss_pred             -cEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEee-cCceeEee-CCcceeeee
Confidence             33221100111111 2357899999998 6665321               234555553 34333322 233345789


Q ss_pred             EEccCCc----EEEeeecCCCeEEEEEccCCCccce-----eecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         208 EFSSNGI----LLFSGARKDCEIICWDLRNPGCILH-----TFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       208 ~~~~~~~----~l~~~~~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                      +|+|++.    .|+++....+.|..||+...+....     .+... .....-.+++.++|++.++....+.|.+||.+.
T Consensus       178 ~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~-~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT-HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC-SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccc-ccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence            9998764    4555432688999999875443211     11111 112344688899999888877789999999888


Q ss_pred             CCCCCCCCccccccccceecccccccceeeeccCCCccccee-eEEeeecceeeee
Q psy2305         279 SNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLV-ADATCSGQITNVK  333 (334)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~-~l~t~~~d~~i~~  333 (334)
                      +            +....+.......++++|  .|++    + +.+|.+.+++|..
T Consensus       257 g------------~~~~~i~~p~~~~t~~af--g~d~----~~lyVt~~~~g~i~~  294 (314)
T d1pjxa_         257 G------------QPKMRIRCPFEKPSNLHF--KPQT----KTIFVTEHENNAVWK  294 (314)
T ss_dssp             B------------SCSEEEECSSSCEEEEEE--CTTS----SEEEEEETTTTEEEE
T ss_pred             C------------EEEEEEECCCCCEEEEEE--eCCC----CEEEEEECCCCcEEE
Confidence            7            444555555567889999  9998    6 5667677777753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.38  E-value=1.1e-09  Score=88.33  Aligned_cols=231  Identities=12%  Similarity=0.078  Sum_probs=144.3

Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee---CCcEEEEEcCCCCCee
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF---LSEVKIFSTDRPGREC  147 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~  147 (334)
                      ++|+++|+++++-...+.|..|+..+++....+.....     ....+++++||+++++..   .....++.+...+..+
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~-----~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKA-----NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSS-----SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCC-----CeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            34488999877777888999999877665544433222     578999999999887653   2334444444323333


Q ss_pred             eeecccccccccceEEEEEcCCCCcEEEEeec------CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec
Q psy2305         148 VSRNLKPWFRKNIVSAIAINPVHPDICALGTY------SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR  221 (334)
Q Consensus       148 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  221 (334)
                      .... ...........+++.++|+ +.++...      .+.+..++.. ++.+..+...-...+.++|+|+++.|+.+..
T Consensus       120 ~~~~-~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         120 QDII-EDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             EEEE-CSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeec-cCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeeeccccceEEEecc
Confidence            2210 1112234578899999998 6665322      2346666643 3333333333345678999999997766653


Q ss_pred             CCCeEEEEEccCCCccceeecc-----cccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccce
Q psy2305         222 KDCEIICWDLRNPGCILHTFPR-----QVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYK  296 (334)
Q Consensus       222 ~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  296 (334)
                      ..+.|..|++...+........     .......-.+++.++|++.++....+.|.+||.. +            +.+..
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~-G------------~~l~~  263 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G------------YPIGQ  263 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-S------------CEEEE
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC-C------------cEEEE
Confidence            6889999998764433222211     1111224468889999988888889999999964 5            34444


Q ss_pred             ec------ccccccceeeeccCCCcccceeeEEeeecc
Q psy2305         297 FS------AHQDCTNGVRWKHHKFERDLLVADATCSGQ  328 (334)
Q Consensus       297 ~~------~~~~~i~~~~~~~s~~~~~~~~~l~t~~~d  328 (334)
                      +.      ++...+++++|  .|+.    ..+++...|
T Consensus       264 i~~P~~~~~~~~~~~~~~~--~~~~----~~~~~t~~~  295 (319)
T d2dg1a1         264 ILIPGRDEGHMLRSTHPQF--IPGT----NQLIICSND  295 (319)
T ss_dssp             EECTTGGGTCSCBCCEEEE--CTTS----CEEEEEEEC
T ss_pred             EeCCCcCCCcCceeeeEEE--eCCC----CEEEEEcCC
Confidence            32      23345789999  9887    666555443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.33  E-value=8.9e-09  Score=82.84  Aligned_cols=229  Identities=11%  Similarity=0.061  Sum_probs=142.3

Q ss_pred             eeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           4 EEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      +..++|.++|++.++-...+.|..|+.++....               ............       ++++++|+++++.
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~---------------~~~~~~~~~p~g-------la~~~dG~l~va~   99 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------RPFVSHKANPAA-------IKIHKDGRLFVCY   99 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------EEEECSSSSEEE-------EEECTTSCEEEEE
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeEE---------------EEEeCCCCCeeE-------EEECCCCCEEEEe
Confidence            468899999997777778889999988876643               111112233344       4458899887765


Q ss_pred             eC----CCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeC-------CcEEEEEcCCCCCeeeeecc
Q psy2305          84 SM----YAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFL-------SEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        84 ~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-------~~i~i~d~~~~~~~~~~~~~  152 (334)
                      ..    .+.+...+...+............   ..+..+++.++|++.++...       +.+..++.+  +..+..   
T Consensus       100 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d--g~~~~~---  171 (319)
T d2dg1a1         100 LGDFKSTGGIFAATENGDNLQDIIEDLSTA---YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--FRTVTP---  171 (319)
T ss_dssp             CTTSSSCCEEEEECTTSCSCEEEECSSSSC---CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--SCCEEE---
T ss_pred             cCCCccceeEEEEcCCCceeeeeccCCCcc---cCCcceeEEeccceeecccccccccCcceeEEEecc--cceeEE---
Confidence            43    234555565555544444322211   15788999999987776432       234444443  443332   


Q ss_pred             cccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-CceEee-------ccCCCCeEEEEEccCCcEEEeeecCCC
Q psy2305         153 KPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-RPLFFL-------KGHNGGITHLEFSSNGILLFSGARKDC  224 (334)
Q Consensus       153 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~~d~  224 (334)
                       ....-...+.++|+|+++.++++-+..+.|..||+... ......       .........+++.++|++.++.. ..+
T Consensus       172 -~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~-~~g  249 (319)
T d2dg1a1         172 -IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY-GQG  249 (319)
T ss_dssp             -EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE-TTT
T ss_pred             -EeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc-CCC
Confidence             22223456789999999834455567889999998643 222111       11123356899999999777777 789


Q ss_pred             eEEEEEccCCCccceeecccc----cCCceEEEEecCCCceEEeee
Q psy2305         225 EIICWDLRNPGCILHTFPRQV----STNQRVYFDLTSCSNYLLSGN  266 (334)
Q Consensus       225 ~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~~~  266 (334)
                      .|.++|..  ++.+.++....    ......+++|.|++..+++..
T Consensus       250 ~V~~~~p~--G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         250 RVLVFNKR--GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEEEECTT--SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             EEEEECCC--CcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            99999964  66666664321    123466788988887666544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=9.3e-10  Score=93.34  Aligned_cols=227  Identities=9%  Similarity=-0.018  Sum_probs=130.9

Q ss_pred             EEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee--
Q psy2305           7 VDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS--   84 (334)
Q Consensus         7 ~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~--   84 (334)
                      ..|.+++.++.. ..+|.|.+||+.+++....+...  ..          ....+..       ..+|||+++++...  
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~--~~----------~~~~~~~-------~~~SpD~~~vl~~~~~   81 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGK--KI----------ESLRAIR-------YEISPDREYALFSYNV   81 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTT--TT----------TTTTCSE-------EEECTTSSEEEEEESC
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCc--cc----------cccccce-------eEECCCCCeEEEEEcc
Confidence            457788876654 46788999999887754111110  00          0112222       23588999887763  


Q ss_pred             -------CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccccccc
Q psy2305          85 -------MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPWFR  157 (334)
Q Consensus        85 -------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~  157 (334)
                             ..+.+.++|+.++............   ..+....|||||+.||-..++.|.+.+... +...+.   ...+.
T Consensus        82 ~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~---~~l~~~~wSPDG~~iafv~~~nl~~~~~~~-~~~~~l---t~~g~  154 (465)
T d1xfda1          82 EPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN---AKLQYAGWGPKGQQLIFIFENNIYYCAHVG-KQAIRV---VSTGK  154 (465)
T ss_dssp             CCCSSSCCCSEEEEEESSSCCCEECCCTTCCS---CCCSBCCBCSSTTCEEEEETTEEEEESSSS-SCCEEE---ECCCB
T ss_pred             cceeEeeccccEEEEEccCCceeeccCccCCc---cccceeeeccCCceEEEEecceEEEEecCC-CceEEE---ecccC
Confidence                   3467889999888754432221111   155678999999999988888898888775 333322   12221


Q ss_pred             cc-----------------ceEEEEEcCCCCcEEEEeecC-C---------------------------------eEEEE
Q psy2305         158 KN-----------------IVSAIAINPVHPDICALGTYS-K---------------------------------IIGLF  186 (334)
Q Consensus       158 ~~-----------------~v~~~~~~~~~~~~l~~~~~d-g---------------------------------~i~i~  186 (334)
                      ..                 .-.++-|||||+ .||....| .                                 .+.++
T Consensus       155 ~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk-~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~  233 (465)
T d1xfda1         155 EGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVI  233 (465)
T ss_dssp             TTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEE
T ss_pred             cceeeccccchhhhhhhccccceEEECCCCC-eEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEE
Confidence            11                 124778999999 77765422 2                                 34555


Q ss_pred             ECCCCCceEee------ccCCCCeEEEEEccCCcEEEeeecCC---CeEEEEEccCCCccceeecccccCCce----EEE
Q psy2305         187 SDSDGRPLFFL------KGHNGGITHLEFSSNGILLFSGARKD---CEIICWDLRNPGCILHTFPRQVSTNQR----VYF  253 (334)
Q Consensus       187 d~~~~~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~  253 (334)
                      |+.++......      .....-+..+.|+|+++.++.....+   ..+.++|..+ ++....+... ...++    ...
T Consensus       234 d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~t-g~~~~~~~e~-~~~wv~~~~~~p  311 (465)
T d1xfda1         234 GLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDE-SEAWLHRQNEEP  311 (465)
T ss_dssp             ESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEE-CSSCCCCCCCCC
T ss_pred             ecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCC-CcEEEEEEEc-CCceEeccCCce
Confidence            55443322111      11122367789999998666543112   2577788876 5543333322 22221    224


Q ss_pred             EecCCCceEE
Q psy2305         254 DLTSCSNYLL  263 (334)
Q Consensus       254 ~~s~~~~~l~  263 (334)
                      .|+|+|+.++
T Consensus       312 ~~~~dg~~~~  321 (465)
T d1xfda1         312 VFSKDGRKFF  321 (465)
T ss_dssp             EECTTSCSEE
T ss_pred             eEccCCCeeE
Confidence            6889998543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.2e-08  Score=86.43  Aligned_cols=281  Identities=10%  Similarity=0.004  Sum_probs=151.0

Q ss_pred             eeEEEEcCCCcEEEEee---------CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeee--eceeEEEEEEecccce
Q psy2305           4 EEDVDEAPDGTCLLTNS---------NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIK--EGGIIYDYVWYPKTSS   72 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~---------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~   72 (334)
                      +....|||||++++...         ..+.+.++|+.++....               +...  ....+       ....
T Consensus        63 ~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~---------------l~~~~~~~~~l-------~~~~  120 (465)
T d1xfda1          63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS---------------LDPPEVSNAKL-------QYAG  120 (465)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE---------------CCCTTCCSCCC-------SBCC
T ss_pred             cceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee---------------ccCccCCcccc-------ceee
Confidence            45678999999887753         35788999999887641               1111  11122       1245


Q ss_pred             ecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccc------------c-ccceeEEEEcCCCCEEEEee--CCcEEE
Q psy2305          73 IDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVD------------E-VTHAYSLAFSLDGNKIYAGF--LSEVKI  137 (334)
Q Consensus        73 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------~-~~~v~~~~~~~~~~~l~~~~--d~~i~i  137 (334)
                      |||||+.||... ++.|.+.+..++...+.........            + .+.-..+.|||||++|+...  +..+..
T Consensus       121 wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~  199 (465)
T d1xfda1         121 WGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPI  199 (465)
T ss_dssp             BCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCE
T ss_pred             eccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccce
Confidence            699999998876 6678888887776655443211100            0 00124788999999999653  455554


Q ss_pred             EEcCC---------------------------------CCCeeeeecc-cccccccceEEEEEcCCCCcEEEEeec-C--
Q psy2305         138 FSTDR---------------------------------PGRECVSRNL-KPWFRKNIVSAIAINPVHPDICALGTY-S--  180 (334)
Q Consensus       138 ~d~~~---------------------------------~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~-d--  180 (334)
                      +.+..                                 ........+. .......-+..+.|+|+++ +++.... +  
T Consensus       200 ~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~-~~~~~~nR~q~  278 (465)
T d1xfda1         200 MELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQN  278 (465)
T ss_dssp             EEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSC
T ss_pred             eecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCe-EEEEEEccccc
Confidence            44321                                 1000000000 0111122367889999987 5554322 2  


Q ss_pred             -CeEEEEECCCCCceEeeccC-CCCe----EEEEEccCCcEEEe--eecCCC--eEEEEEccC-----CCccceeecccc
Q psy2305         181 -KIIGLFSDSDGRPLFFLKGH-NGGI----THLEFSSNGILLFS--GARKDC--EIICWDLRN-----PGCILHTFPRQV  245 (334)
Q Consensus       181 -g~i~i~d~~~~~~~~~~~~~-~~~i----~~~~~~~~~~~l~~--~~~~d~--~i~iwd~~~-----~~~~~~~~~~~~  245 (334)
                       ..+.++|..+++....+... .+.|    ....|+|+|+.++.  .+..+|  .++..++..     .+.....+... 
T Consensus       279 ~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G-  357 (465)
T d1xfda1         279 VSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-  357 (465)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-
T ss_pred             cceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccC-
Confidence             36888999988766554322 2222    24678999985432  221333  344444321     12223333321 


Q ss_pred             cCCceEE-EEecCCCceEE-eeecC--CcEEEEe--CCCCCCCCCCCccccccccceecccccccceeeeccCCCcccce
Q psy2305         246 STNQRVY-FDLTSCSNYLL-SGNTN--GDLSIWN--VNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLL  319 (334)
Q Consensus       246 ~~~~~~~-~~~s~~~~~l~-~~~~d--g~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~  319 (334)
                       .-.|.. +.|+++++.++ ++..+  +.-++|.  +......         +++...........++.|  ||++    
T Consensus       358 -~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~---------~~lt~~~~~~~~~~~~~~--S~~~----  421 (465)
T d1xfda1         358 -DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR---------QCLSCDLVENCTYFSASF--SHSM----  421 (465)
T ss_dssp             -SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC---------BCSSTTSSSSCCCCEEEE--CTTS----
T ss_pred             -CceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcc---------eeeccccCCCCCEEEEEE--CCCC----
Confidence             222333 35788776654 44333  2334444  4433211         222221223345678999  9999    


Q ss_pred             eeEEee
Q psy2305         320 VADATC  325 (334)
Q Consensus       320 ~~l~t~  325 (334)
                      ++++..
T Consensus       422 ~y~v~~  427 (465)
T d1xfda1         422 DFFLLK  427 (465)
T ss_dssp             SEEEEE
T ss_pred             CEEEEE
Confidence            876643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.06  E-value=6.4e-07  Score=70.83  Aligned_cols=222  Identities=9%  Similarity=-0.003  Sum_probs=139.4

Q ss_pred             CCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeeccccc
Q psy2305          76 FTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNLKPW  155 (334)
Q Consensus        76 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~  155 (334)
                      +++++.+=-..+.|.-||.++++.. .+... .     .+.++++.++|.++++.. ..+..+|..+ ++..........
T Consensus        29 ~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~-~-----~~~~i~~~~dg~l~va~~-~gl~~~d~~t-g~~~~l~~~~~~   99 (295)
T d2ghsa1          29 SGTAWWFNILERELHELHLASGRKT-VHALP-F-----MGSALAKISDSKQLIASD-DGLFLRDTAT-GVLTLHAELESD   99 (295)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEE-EEECS-S-----CEEEEEEEETTEEEEEET-TEEEEEETTT-CCEEEEECSSTT
T ss_pred             CCEEEEEECCCCEEEEEECCCCeEE-EEECC-C-----CcEEEEEecCCCEEEEEe-CccEEeeccc-ceeeEEeeeecC
Confidence            5555555446788999999887653 33321 2     678999999988777644 4688999886 433221110111


Q ss_pred             ccccceEEEEEcCCCCcEEEEeec----CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEc
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTY----SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDL  231 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~  231 (334)
                      .....++.+.+.|+|+ +.++...    .+.-.+|.+..++....+. .-.....++|+++++.++.+....+.|..|++
T Consensus       100 ~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~  177 (295)
T d2ghsa1         100 LPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPL  177 (295)
T ss_dssp             CTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEB
T ss_pred             CCcccceeeEECCCCC-EEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeee
Confidence            2234688999999998 5554322    2345566666665544443 23456789999999877665536788999988


Q ss_pred             cCCCcc----ceee-cccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccce
Q psy2305         232 RNPGCI----LHTF-PRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNG  306 (334)
Q Consensus       232 ~~~~~~----~~~~-~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  306 (334)
                      ......    ...+ .........-.+++..+|++.++.-..+.|..||.. +            +.+..+.-....+++
T Consensus       178 d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G------------~~~~~i~lP~~~~T~  244 (295)
T d2ghsa1         178 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G------------NHIARYEVPGKQTTC  244 (295)
T ss_dssp             CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C------------CEEEEEECSCSBEEE
T ss_pred             cccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-C------------cEeeEecCCCCceEE
Confidence            642211    1111 111123445678889999988877778899999965 4            566666555567899


Q ss_pred             eeeccC-CCcccceeeEEeee
Q psy2305         307 VRWKHH-KFERDLLVADATCS  326 (334)
Q Consensus       307 ~~~~~s-~~~~~~~~~l~t~~  326 (334)
                      ++|  - |+..   .+++|..
T Consensus       245 ~~F--GG~d~~---~LyvTta  260 (295)
T d2ghsa1         245 PAF--IGPDAS---RLLVTSA  260 (295)
T ss_dssp             EEE--ESTTSC---EEEEEEB
T ss_pred             EEE--eCCCCC---EEEEEEC
Confidence            999  5 5541   4445543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.03  E-value=1.8e-06  Score=68.18  Aligned_cols=222  Identities=13%  Similarity=0.060  Sum_probs=140.8

Q ss_pred             eEEEEcCC-CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe
Q psy2305           5 EDVDEAPD-GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS   83 (334)
Q Consensus         5 ~~~~~sp~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~   83 (334)
                      .+..|++. +.+..+--..+.|..||..+++..               .+.  ....+.++.+       .++++++++ 
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~---------------~~~--~~~~~~~i~~-------~~dg~l~va-   75 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT---------------VHA--LPFMGSALAK-------ISDSKQLIA-   75 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE---------------EEE--CSSCEEEEEE-------EETTEEEEE-
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE---------------EEE--CCCCcEEEEE-------ecCCCEEEE-
Confidence            34567764 444444446788999998887653               221  2234555544       568877665 


Q ss_pred             eCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-----CCcEEEEEcCCCCCeeeeecccccccc
Q psy2305          84 SMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-----LSEVKIFSTDRPGRECVSRNLKPWFRK  158 (334)
Q Consensus        84 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~  158 (334)
                      +.+ .+.++|..+++.......... .....++.+.+.|+|++.++..     .+.-.+|.+.. ++...     ....-
T Consensus        76 ~~~-gl~~~d~~tg~~~~l~~~~~~-~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-g~~~~-----~~~~~  147 (295)
T d2ghsa1          76 SDD-GLFLRDTATGVLTLHAELESD-LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKVTK-----LFADI  147 (295)
T ss_dssp             ETT-EEEEEETTTCCEEEEECSSTT-CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEEEE-----EEEEE
T ss_pred             EeC-ccEEeecccceeeEEeeeecC-CCcccceeeEECCCCCEEEEeccccccccceeEeeecC-CcEEE-----Eeecc
Confidence            444 488999998876544433221 1122688999999999877643     23456676654 33222     22223


Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCC------Cc--eEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEE
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDG------RP--LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWD  230 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd  230 (334)
                      ...+.++|+++++.++++-+..+.|..|++...      +.  ...+.+..+....+++..+|++.++.- ..+.|..||
T Consensus       148 ~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~-~~g~V~~~d  226 (295)
T d2ghsa1         148 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYD  226 (295)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEEC
T ss_pred             CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee-CCCceEEec
Confidence            456789999999845566667889999987432      11  112233455678999999998777666 688899999


Q ss_pred             ccCCCccceeecccccCCceEEEEec-CCCceEEe
Q psy2305         231 LRNPGCILHTFPRQVSTNQRVYFDLT-SCSNYLLS  264 (334)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~l~~  264 (334)
                      ..  ++.+..+.-.  ...+++++|- |+.+.|+.
T Consensus       227 p~--G~~~~~i~lP--~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         227 TD--GNHIARYEVP--GKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             TT--CCEEEEEECS--CSBEEEEEEESTTSCEEEE
T ss_pred             CC--CcEeeEecCC--CCceEEEEEeCCCCCEEEE
Confidence            65  6667766543  3457788885 66655543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.89  E-value=8.1e-07  Score=69.41  Aligned_cols=233  Identities=16%  Similarity=0.094  Sum_probs=122.9

Q ss_pred             EEcCC--CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC
Q psy2305           8 DEAPD--GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM   85 (334)
Q Consensus         8 ~~sp~--~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~   85 (334)
                      ..|||  |+.+|..+ ++.|.+.|+.+++..               .+.. ..+.+...+|       ||||+.||....
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~---------------~Lt~-~~~~~~~p~~-------SPDG~~iaf~~~   60 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR---------------KIVS-NLGVINNARF-------FPDGRKIAIRVM   60 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE---------------EEEC-SSSEEEEEEE-------CTTSSEEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE---------------EEec-CCCcccCEEE-------CCCCCEEEEEEe
Confidence            46899  99888764 467999999988764               2332 2345566666       789999886542


Q ss_pred             -C-----CcEEEEeCCCCeeeEEEcCccc-cccccceeEEEEcCCCCEEEEee--C-----CcEEEEEcCCCCCeeeeec
Q psy2305          86 -Y-----APIHLWDSVGGEIKATYRPYNQ-VDEVTHAYSLAFSLDGNKIYAGF--L-----SEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        86 -d-----~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~--d-----~~i~i~d~~~~~~~~~~~~  151 (334)
                       +     ..|.+++..+++..+....... ...........|+|+|+.|+...  .     ..+...+..  +.....  
T Consensus        61 ~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~--  136 (281)
T d1k32a2          61 RGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVEND--GINFVP--  136 (281)
T ss_dssp             ESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGG--GTEEEE--
T ss_pred             eCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCC--CceeEE--
Confidence             2     2477778877766543222111 01111456889999999988642  1     224444444  222221  


Q ss_pred             ccccccccceEEEEEcCCCCcEEEEeecCC-----------eEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeee
Q psy2305         152 LKPWFRKNIVSAIAINPVHPDICALGTYSK-----------IIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGA  220 (334)
Q Consensus       152 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  220 (334)
                          .+....... +.+++...++......           ............ ..............++++..+.....
T Consensus       137 ----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (281)
T d1k32a2         137 ----LNLGPATHI-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHRIYFITDI  210 (281)
T ss_dssp             ----CCSCSCSEE-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTEEEEEECT
T ss_pred             ----ecCCcccee-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeeccccceeccc
Confidence                112222233 3344431444332221           111112111222 22222333445556666532222221


Q ss_pred             cCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCC
Q psy2305         221 RKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSN  280 (334)
Q Consensus       221 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  280 (334)
                      .....|.++|+..  .....+... ....+  ..|+|||+.|+.. .++.|+++|+.+++
T Consensus       211 ~~~~~l~~~d~~g--~~~~~lt~~-~~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         211 DGFGQIYSTDLDG--KDLRKHTSF-TDYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             TSSCEEEEEETTS--CSCEECCCC-CSSCE--EEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred             ccccceEEEeCCC--CceEEeecC-CCccc--ccCcCCCCEEEEE-eCCEEEEEECCCCC
Confidence            1234577777764  334444432 12223  3589999998764 46889999999873

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.67  E-value=2e-05  Score=63.60  Aligned_cols=191  Identities=14%  Similarity=0.127  Sum_probs=116.8

Q ss_pred             CCcEEEEee-CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeCC----
Q psy2305          12 DGTCLLTNS-NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSMY----   86 (334)
Q Consensus        12 ~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~d----   86 (334)
                      ||++|++.. .+++|.+-|+.+.+..+              .+.......+..++..+     .|+..+++..+.+    
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~k--------------Ii~iPn~~~~HG~r~~~-----~p~T~YV~~~~e~~vP~  158 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDA--------------ILEIPNAKGIHGLRPQK-----WPRSNYVFCNGEDETPL  158 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEE--------------EEECSSCCSEEEEEECC-----SSBCSEEEEEECSCEES
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeE--------------EEecCCCCCCceeeccc-----CCCeEEEEccCcccccc
Confidence            789888776 67899999999888652              23322233344433322     4455666665542    


Q ss_pred             --------------CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C--C-------------cEE
Q psy2305          87 --------------APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L--S-------------EVK  136 (334)
Q Consensus        87 --------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d--~-------------~i~  136 (334)
                                    +.+.++|.++.+....+....      ....+.++++|+++++.+ +  .             .+.
T Consensus       159 pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g------~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~  232 (459)
T d1fwxa2         159 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG------NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIV  232 (459)
T ss_dssp             SCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESS------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEE
T ss_pred             CCCCccccchhhcceEEEEEecCCceEEEEeeeCC------ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEE
Confidence                          235678999988877766533      456899999999998654 2  1             133


Q ss_pred             EEEc-----------------------CCC-CCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCC
Q psy2305         137 IFST-----------------------DRP-GRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGR  192 (334)
Q Consensus       137 i~d~-----------------------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  192 (334)
                      +++.                       ... +....    .+-.-......+..+|||+++++++..+.++.++|++.-.
T Consensus       233 V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~----~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~  308 (459)
T d1fwxa2         233 VFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFT----RYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD  308 (459)
T ss_dssp             EEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSE----EEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred             EechHHhHHhhhcCCcEEeCCceeecccccCCccee----EEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhh
Confidence            3332                       210 00000    0111223456889999999666677789999999986321


Q ss_pred             --------c----eEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         193 --------P----LFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       193 --------~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                              +    ..... ..-.-..-+|...|....+.- -|..|.-|++..
T Consensus       309 ~~~~~~~~~~~~~~~e~e-lglgPLht~fd~~g~aytslf-ids~v~kw~~~~  359 (459)
T d1fwxa2         309 AVFYENADPRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLF-LDSQVVKWNIED  359 (459)
T ss_dssp             HHHHSCC-GGGGEEECCB-CCSCEEEEEECTTSEEEEEET-TTTEEEEEEHHH
T ss_pred             hhhcccCCccccEEeecc-cCcCccccccCCCceEEEEee-ccceEEEEecch
Confidence                    1    11111 122345678888885444455 799999999853

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.61  E-value=2e-05  Score=63.52  Aligned_cols=192  Identities=7%  Similarity=-0.052  Sum_probs=117.6

Q ss_pred             CCCcEEEEee-CCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCC--CCEEEEeeC-------------------
Q psy2305          75 GFTSYFLCSS-MYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLD--GNKIYAGFL-------------------  132 (334)
Q Consensus        75 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~d-------------------  132 (334)
                      +||++|++.. .+.+|.+-|+.+.+..+.+......    .+..+...++  ..++++++.                   
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~----~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK----GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC----SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCC----CCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence            4889988775 5678999999999987766543322    5677777654  456665432                   


Q ss_pred             CcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCC---------------eEEEE-----------
Q psy2305         133 SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSK---------------IIGLF-----------  186 (334)
Q Consensus       133 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~i~-----------  186 (334)
                      +.+.+.|..+ .+...+..  .   ......+.++++|+ ++++.+.+.               .+.++           
T Consensus       173 ~~~t~ID~~t-m~V~~QV~--V---~g~ld~~~~s~dGK-~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~  245 (459)
T d1fwxa2         173 NVFTAVDADK-WEVAWQVL--V---SGNLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  245 (459)
T ss_dssp             EEEEEEETTT-TEEEEEEE--E---SSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             eEEEEEecCC-ceEEEEee--e---CCChhccccCCCCC-EEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence            2356677765 33333211  1   23456789999999 666654331               23333           


Q ss_pred             ------------ECCC--C-CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCc-------cceeeccc
Q psy2305         187 ------------SDSD--G-RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGC-------ILHTFPRQ  244 (334)
Q Consensus       187 ------------d~~~--~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~-------~~~~~~~~  244 (334)
                                  |.+.  + ..+..+.. ......+..+|||+++++++..+.++.++|++....       +...+...
T Consensus       246 Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e  324 (459)
T d1fwxa2         246 GDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  324 (459)
T ss_dssp             TCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred             CCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee
Confidence                        3322  1 11222221 123457899999999998886899999999974111       11111111


Q ss_pred             -ccCCceEEEEecCCCceEEeeecCCcEEEEeCCC
Q psy2305         245 -VSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNT  278 (334)
Q Consensus       245 -~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~  278 (334)
                       ......+..+|+.+|.-..+---|.+|.-|++..
T Consensus       325 ~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         325 PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence             1233456678988887666666799999999853

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.50  E-value=7.5e-05  Score=57.74  Aligned_cols=111  Identities=11%  Similarity=0.038  Sum_probs=66.2

Q ss_pred             eecCC--CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEe-e-CC-----cEEEEEcCC
Q psy2305          72 SIDGF--TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAG-F-LS-----EVKIFSTDR  142 (334)
Q Consensus        72 ~~s~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~-----~i~i~d~~~  142 (334)
                      ..+|+  |+.++..+ ++.|.+.|+.+++..+.... ..     .+...+|||||+.|+.. . ++     .|.+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~-~~-----~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~   77 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSN-LG-----VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN   77 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECS-SS-----EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecC-CC-----cccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence            34778  88888765 56788889988876543332 22     67889999999999843 2 22     355556553


Q ss_pred             CCCeeeeecc---cccccccceEEEEEcCCCCcEEEEeecC------CeEEEEECCCCC
Q psy2305         143 PGRECVSRNL---KPWFRKNIVSAIAINPVHPDICALGTYS------KIIGLFSDSDGR  192 (334)
Q Consensus       143 ~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~  192 (334)
                        ........   .............|+|+|+ .|+.....      ..+...+...+.
T Consensus        78 --g~~~~lt~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~  133 (281)
T d1k32a2          78 --GEIKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGIN  133 (281)
T ss_dssp             --TEEEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred             --CceEEeeecCCCccCccccccccccCCCCC-EEEEEEccCCCccceeeeeecCCCce
Confidence              33332110   0011223456789999999 77654321      235555554443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.50  E-value=8e-05  Score=60.71  Aligned_cols=280  Identities=12%  Similarity=-0.009  Sum_probs=141.3

Q ss_pred             EEEEcCCCcEEEEeeCCC-----------eEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceec
Q psy2305           6 DVDEAPDGTCLLTNSNDN-----------HLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSID   74 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~~d~-----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s   74 (334)
                      ......+|+.++.|+.+.           .+.+||..+++...            .......+......       .++.
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~------------~~~~~~~~~~~~~~-------~~~~   84 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD------------RTVTVTKHDMFCPG-------ISMD   84 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC------------CEEEECSCCCSSCE-------EEEC
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEee------------cCCCCCCcccceeE-------EEEe
Confidence            344556888888877421           36789998876531            01111111111111       2346


Q ss_pred             CCCcEEEEeeCC-CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C------CcEEEEEcCCCCCe
Q psy2305          75 GFTSYFLCSSMY-APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L------SEVKIFSTDRPGRE  146 (334)
Q Consensus        75 ~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d------~~i~i~d~~~~~~~  146 (334)
                      +++++++.|+.+ ..+.+||..+......-....    ...-..++..+||+.++.|+ +      ..+.+||..+.  .
T Consensus        85 ~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~----~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~--~  158 (387)
T d1k3ia3          85 GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV----ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK--T  158 (387)
T ss_dssp             TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS----CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT--E
T ss_pred             cCCcEEEeecCCCcceeEecCccCcccccccccc----cccccceeeecCCceeeeccccccccccceeeeecCCCC--c
Confidence            799999888755 589999998876643221111    11345778888999888764 1      46899998852  2


Q ss_pred             eeeecc-----cc-cccc-----cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee--cc----CCC--CeEEE
Q psy2305         147 CVSRNL-----KP-WFRK-----NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--KG----HNG--GITHL  207 (334)
Q Consensus       147 ~~~~~~-----~~-~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~----~~~--~i~~~  207 (334)
                      ....+.     .. ..+.     ..-..+...++|+ .+..+...+.+.+++..+......-  ..    +..  .-.++
T Consensus       159 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (387)
T d1k3ia3         159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS-VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV  237 (387)
T ss_dssp             EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC-EEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred             eeecCCCcccccccccccceeeccceeEEEEeCCCC-EEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEE
Confidence            111110     00 0000     0111233345676 7777777777888887665332211  00    000  11222


Q ss_pred             EE-ccCCcEEEeeecCC-------CeEEEEEccCCCcc---ceeecccccCCceEEEEecCCCceEEeeecCC-------
Q psy2305         208 EF-SSNGILLFSGARKD-------CEIICWDLRNPGCI---LHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNG-------  269 (334)
Q Consensus       208 ~~-~~~~~~l~~~~~~d-------~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg-------  269 (334)
                      .+ ..+++.++.++..+       ....+.++......   ......-.....-.+....++|++++.|+.+.       
T Consensus       238 ~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~  317 (387)
T d1k3ia3         238 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS  317 (387)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred             EeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCC
Confidence            22 34667777665222       12334443321111   11111000111112334568999999887531       


Q ss_pred             ----cEEEEeCCCCCCCCCCCccccccccceecccccccceeeeccCCCcccceeeEEeeec
Q psy2305         270 ----DLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTNGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       270 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                          .+.+||..+.+          |..+..+......-.....  .+||    ++|+.|+.
T Consensus       318 ~~~~~ve~Ydp~~~~----------W~~~~~~~~~R~~Hs~a~l--~~dG----~v~v~GG~  363 (387)
T d1k3ia3         318 TPVFTPEIYVPEQDT----------FYKQNPNSIVRVYHSISLL--LPDG----RVFNGGGG  363 (387)
T ss_dssp             SBCCCCEEEEGGGTE----------EEECCCCSSCCCTTEEEEE--CTTS----CEEEEECC
T ss_pred             cEeceEEEEECCCCe----------EEECCCCCCcccceEEEEE--CCCC----EEEEEeCC
Confidence                46788877652          1222222211111112345  7899    99999884

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=0.00011  Score=56.05  Aligned_cols=210  Identities=9%  Similarity=0.054  Sum_probs=137.0

Q ss_pred             ecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCeeeeecc
Q psy2305          73 IDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRECVSRNL  152 (334)
Q Consensus        73 ~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~  152 (334)
                      .+|..+.||.-+ ..++.++|+++.+.++.+...+      +|.--.|-.+ +.|+...+..|.-|+++....+.+    
T Consensus        70 MhP~~~IiALra-g~~LQiFnletK~klks~~~~e------~VvfWkWis~-~~L~lVT~taVYHW~~~g~s~P~k----  137 (327)
T d1utca2          70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------DVTFWKWISL-NTVALVTDNAVYHWSMEGESQPVK----  137 (327)
T ss_dssp             ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS------CCCEEEESSS-SEEEEECSSEEEEEESSSSCCCEE----
T ss_pred             cCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC------CcEEEEecCC-CEEEEEcCCceEEEcccCCCCchh----
Confidence            377888888766 4589999999999988887644      5666677755 456666678899999975333333    


Q ss_pred             ccccc----ccceEEEEEcCCCCcEEEEee-------cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCC---cEEEe
Q psy2305         153 KPWFR----KNIVSAIAINPVHPDICALGT-------YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNG---ILLFS  218 (334)
Q Consensus       153 ~~~~~----~~~v~~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~  218 (334)
                      .+..|    ...|..-..+++.+ +++..+       -.|.+.+|..+ .+..+.+++|.+.-..+...-+.   +.++.
T Consensus       138 ~fdR~~~L~~~QIInY~~d~~~k-W~~l~GI~~~~~~i~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f  215 (327)
T d1utca2         138 MFDRHSSLAGCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCF  215 (327)
T ss_dssp             EEECCGGGTTCEEEEEEECTTSC-EEEEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEEEEEEECCTTCSSCEEEEEE
T ss_pred             hhhhcccccCceEEEEEECCCCC-EEEEEeEecCCCceeEEEEEEEec-cCcCccccceeeeeEEEEcCCCCCCceEEEE
Confidence            22222    35677888899999 665432       24678899975 44567788886655444443221   23333


Q ss_pred             eec--CCCeEEEEEccCCCcccee---------ecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCc
Q psy2305         219 GAR--KDCEIICWDLRNPGCILHT---------FPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYE  287 (334)
Q Consensus       219 ~~~--~d~~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  287 (334)
                      +.+  ..+.+.+.++..+...-..         +..........++..|+.-..+..-+.-|.|++||++++        
T Consensus       216 a~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg--------  287 (327)
T d1utca2         216 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG--------  287 (327)
T ss_dssp             EEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC--------
T ss_pred             EECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc--------
Confidence            331  2367888888752211111         112223455677888988888888899999999999998        


Q ss_pred             cccccccceecccccccceee
Q psy2305         288 ESVQEPLYKFSAHQDCTNGVR  308 (334)
Q Consensus       288 ~~~~~~~~~~~~~~~~i~~~~  308 (334)
                          .++..-+-..+.|.-.+
T Consensus       288 ----t~i~~nRIs~~~iF~~a  304 (327)
T d1utca2         288 ----TCIYMNRISGETIFVTA  304 (327)
T ss_dssp             ----CEEEEEECCSSCEEEEE
T ss_pred             ----cEEEEeecCCCceEEec
Confidence                56655554455554333

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=0.00054  Score=52.43  Aligned_cols=233  Identities=12%  Similarity=0.023  Sum_probs=133.5

Q ss_pred             CcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEe-eCCCcEEE
Q psy2305          13 GTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCS-SMYAPIHL   91 (334)
Q Consensus        13 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~-~~d~~i~i   91 (334)
                      |.+|+.+.. +.|+-.+++......         . ............+.+++|       ++.++.|.-+ ..++.|+.
T Consensus         1 ~~fLl~s~~-~~I~~~~ld~~~~~~---------~-~~~~~~~~~~~~~~~ld~-------D~~~~~iywsd~~~~~I~~   62 (263)
T d1npea_           1 GTHLLFAQT-GKIERLPLERNTMKK---------T-EAKAFLHIPAKVIIGLAF-------DCVDKVVYWTDISEPSIGR   62 (263)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCG---------G-GCEEEEEEEEEEEEEEEE-------ETTTTEEEEEETTTTEEEE
T ss_pred             CCEEEEeCC-CeEEEEECCCccccc---------c-ccccccccCCCcEEEEEE-------EeCCCEEEEEECCCCeEEE
Confidence            455555543 467777776554320         0 001111122234555555       5566655554 45677888


Q ss_pred             EeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCC
Q psy2305          92 WDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPV  169 (334)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  169 (334)
                      .++..+.....+.....     .+..+++..-+..|+.+.  .+.|.+.+++.  .....   ...........++++|.
T Consensus        63 ~~l~g~~~~~v~~~~~~-----~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg--~~~~~---l~~~~l~~p~~l~vdp~  132 (263)
T d1npea_          63 ASLHGGEPTTIIRQDLG-----SPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRRV---LFDTGLVNPRGIVTDPV  132 (263)
T ss_dssp             EESSSCCCEEEECTTCC-----CEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEE---EECSSCSSEEEEEEETT
T ss_pred             EEcccCCcEEEEEeccc-----cccEEEEeccCCeEEEeccCCCEEEEEecCC--ceEEE---EecccccCCcEEEEecc
Confidence            88865544433432112     678999988777777553  68999999884  32221   12223356789999998


Q ss_pred             CCcEEEEeec---CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccccc
Q psy2305         170 HPDICALGTY---SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS  246 (334)
Q Consensus       170 ~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  246 (334)
                      .. ++.....   ...|.-.++............-....++++.+.++.|+.+....+.|...++.. .. ...+...  
T Consensus       133 ~g-~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g-~~-~~~v~~~--  207 (263)
T d1npea_         133 RG-NLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PG-RRKVLEG--  207 (263)
T ss_dssp             TT-EEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EE-EEEEEEC--
T ss_pred             cC-cEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC-CC-eEEEECC--
Confidence            87 5553322   234555566544333333333356689999988888877653678898888874 22 2322221  


Q ss_pred             CCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       247 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      ......+++. ++.+..+-...+.|...|..++
T Consensus       208 ~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         208 LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCcEEEEEE-CCEEEEEECCCCEEEEEECCCC
Confidence            1223456654 3444444445688999999887

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=0.00065  Score=52.10  Aligned_cols=187  Identities=10%  Similarity=0.025  Sum_probs=114.3

Q ss_pred             EEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCC--eeeeeccccc
Q psy2305          80 FLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGR--ECVSRNLKPW  155 (334)
Q Consensus        80 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~--~~~~~~~~~~  155 (334)
                      |+.+.. ..|+..++.+......+....      .+..++|.+..+.|+-..  .+.|.-.+++....  ....   ...
T Consensus         4 Ll~s~~-~~I~~~~l~~~~~~~~~~~~~------~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~---~~~   73 (266)
T d1ijqa1           4 LFFTNR-HEVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT---VIS   73 (266)
T ss_dssp             EEEECB-SSEEEEETTSCCCEEEECSCS------SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE---EEC
T ss_pred             EEEECC-CeEEEEECCCCcceeeeCCCC------ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEE---EEe
Confidence            444433 358888987765544444322      567899999888887553  56677666653111  1111   122


Q ss_pred             ccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeec-CCCeEEEEEccCC
Q psy2305         156 FRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGAR-KDCEIICWDLRNP  234 (334)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~d~~i~iwd~~~~  234 (334)
                      .....+.++++.+.+.++..+-...+.|.+.++........+.........++++|...+|+.... ..+.|...++.  
T Consensus        74 ~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d--  151 (266)
T d1ijqa1          74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--  151 (266)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--
T ss_pred             CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC--
Confidence            233456789998877745555566789999998765554545555567889999996666665441 23455555555  


Q ss_pred             CccceeecccccCCceEEEEecCCCceEEee-ecCCcEEEEeCCCC
Q psy2305         235 GCILHTFPRQVSTNQRVYFDLTSCSNYLLSG-NTNGDLSIWNVNTS  279 (334)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~  279 (334)
                      +.....+... .-.....+++.+.++.|+.+ ...+.|...++...
T Consensus       152 Gs~~~~l~~~-~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         152 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCceeccccc-ccceeeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence            4434444322 23445678888877766655 44678888898764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=0.00074  Score=51.64  Aligned_cols=160  Identities=9%  Similarity=-0.092  Sum_probs=101.6

Q ss_pred             ceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC
Q psy2305         114 HAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG  191 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  191 (334)
                      .+..++|.+..+.|+-..  .+.|...+++.  .....   ........+.++++..-+.++..+-...+.|.+.++...
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g--~~~~~---v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~  111 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHG--GEPTT---IIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSS--CCCEE---EECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEccc--CCcEE---EEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCc
Confidence            567899998888887553  68888888874  22221   122223467899998777634455556789999998755


Q ss_pred             CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEee-ecCCc
Q psy2305         192 RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSG-NTNGD  270 (334)
Q Consensus       192 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg~  270 (334)
                      .....+.........+++.|...+|+......+..+|+.....+.....+... .-.....+++.+.++.|+.+ ...+.
T Consensus       112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~-~~~~P~glaiD~~~~~lYw~d~~~~~  190 (263)
T d1npea_         112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHR  190 (263)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee-cccccceEEEeecCcEEEEEeCCCCE
Confidence            44333333346788999999877777554122344455444334433333322 23345678888877777555 45678


Q ss_pred             EEEEeCCCC
Q psy2305         271 LSIWNVNTS  279 (334)
Q Consensus       271 i~iwd~~~~  279 (334)
                      |...++...
T Consensus       191 I~~~~~~g~  199 (263)
T d1npea_         191 AECLNPAQP  199 (263)
T ss_dssp             EEEEETTEE
T ss_pred             EEEEECCCC
Confidence            999998765

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.99  E-value=0.0021  Score=50.97  Aligned_cols=194  Identities=11%  Similarity=0.063  Sum_probs=102.0

Q ss_pred             eEEEEcCCCcEEEEeeC------------CCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccce
Q psy2305           5 EDVDEAPDGTCLLTNSN------------DNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSS   72 (334)
Q Consensus         5 ~~~~~sp~~~~l~~~~~------------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~   72 (334)
                      ..+...|+|..+++++.            .|.|.++|+.+.....             ..+.... .......|.|..++
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~-------------~~l~~~~-~~~~~~~f~PhGi~  103 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-------------SELEIIG-NTLDISSFNPHGIS  103 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCE-------------EECEEEC-SSSCGGGCCEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcc-------------eEEEecC-CCCCCcceecccee
Confidence            35788899987766532            4889999987665421             0111100 00000112222222


Q ss_pred             e--cCCCcE-EEEee---CCCcEEEEeCCCCe-eeEEEcCccccccccceeEEEEcCCCCEEEEee----C---------
Q psy2305          73 I--DGFTSY-FLCSS---MYAPIHLWDSVGGE-IKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF----L---------  132 (334)
Q Consensus        73 ~--s~~~~~-l~~~~---~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d---------  132 (334)
                      +  .++++. |++..   ...+|.+|++.... .+.......+. .....+.+++..++.++++-.    +         
T Consensus       104 l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~-~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~  182 (340)
T d1v04a_         104 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH  182 (340)
T ss_dssp             EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHH
T ss_pred             EEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCc-cccCccceEEecCCCEEEecCccCcChhhhhhhHh
Confidence            1  345553 44432   34578888764332 22222111111 112578999999998888731    1         


Q ss_pred             ---CcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEee--ccCCCCeEEE
Q psy2305         133 ---SEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFL--KGHNGGITHL  207 (334)
Q Consensus       133 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~i~~~  207 (334)
                         +...+|..+.  ....    .....-...+.++++|+++.++++-+..+.|+.|++.........  ..-.+....+
T Consensus       183 ~~~~~g~v~~~~~--~~~~----~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi  256 (340)
T d1v04a_         183 LGLAWSFVTYYSP--NDVR----VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNI  256 (340)
T ss_dssp             TTCCCEEEEEECS--SCEE----EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEE
T ss_pred             hcCCceeEEEEcC--CceE----EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCcc
Confidence               1234444442  2222    122234568899999999845566677889999998654432221  1134456678


Q ss_pred             EEcc-CCcEEEee
Q psy2305         208 EFSS-NGILLFSG  219 (334)
Q Consensus       208 ~~~~-~~~~l~~~  219 (334)
                      .+.+ +|.+.+.+
T Consensus       257 ~~d~~~g~lwva~  269 (340)
T d1v04a_         257 SVDPVTGDLWVGC  269 (340)
T ss_dssp             EECTTTCCEEEEE
T ss_pred             EEecCCCEEEEEE
Confidence            8876 45444443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=0.0021  Score=49.19  Aligned_cols=228  Identities=13%  Similarity=-0.042  Sum_probs=130.9

Q ss_pred             EEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee-CCCcEEEEe
Q psy2305          15 CLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS-MYAPIHLWD   93 (334)
Q Consensus        15 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~-~d~~i~iwd   93 (334)
                      +|+.+.. ..|+..++++.+..               .+.. ....+.+++|       ++..+.|.-.. ..+.|.-.+
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~---------------~~~~-~~~~~~~id~-------d~~~~~lYw~D~~~~~I~~~~   58 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYT---------------SLIP-NLRNVVALDT-------EVASNRIYWSDLSQRMICSTQ   58 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCE---------------EEEC-SCSSEEEEEE-------ETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEEECC-CeEEEEECCCCcce---------------eeeC-CCCceEEEEE-------EeCCCEEEEEECCCCEEEEEE
Confidence            3444433 35888899877654               2211 2233445555       55666555543 455666666


Q ss_pred             CCCCe---eeEE-EcCccccccccceeEEEEcCCCCEEEEee--CCcEEEEEcCCCCCeeeeecccccccccceEEEEEc
Q psy2305          94 SVGGE---IKAT-YRPYNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAIN  167 (334)
Q Consensus        94 ~~~~~---~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~  167 (334)
                      +....   .... +.....     .+..+++.+.+..|+.+.  .+.|.+.+++.  .....   ...........++++
T Consensus        59 l~~~~~~~~~~~~~~~~~~-----~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g--~~~~~---~~~~~~~~P~~l~vd  128 (266)
T d1ijqa1          59 LDRAHGVSSYDTVISRDIQ-----APDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKT---LFRENGSKPRAIVVD  128 (266)
T ss_dssp             C--------CEEEECSSCS-----CCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEE---EEECTTCCEEEEEEE
T ss_pred             ecCCCCCcceEEEEeCCCC-----CcceEEEeeccceEEEEecCCCEEEeEecCC--ceEEE---EEcCCCCCcceEEEE
Confidence            54321   1111 221111     567899988777777553  68899999884  33322   233444567899999


Q ss_pred             CCCCcEEEEee--cCCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccc
Q psy2305         168 PVHPDICALGT--YSKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQV  245 (334)
Q Consensus       168 ~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~  245 (334)
                      |... ++....  ..+.|.-.++............-....++++.+.++.|+.+....+.|...++.. ...........
T Consensus       129 ~~~g-~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG-~~~~~~~~~~~  206 (266)
T d1ijqa1         129 PVHG-FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEK  206 (266)
T ss_dssp             TTTT-EEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTT
T ss_pred             cccC-eEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCC-CCEEEEEeCCC
Confidence            9766 454432  3456777777544333333333456789999998888877753678899889874 22222222222


Q ss_pred             cCCceEEEEecCCCceEEeeecCCcEEEEeCCCC
Q psy2305         246 STNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTS  279 (334)
Q Consensus       246 ~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  279 (334)
                      .......+++. ++.+..+-..++.|...+..++
T Consensus       207 ~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         207 RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             cccccEEEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence            22345566655 3344444446788888888777

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.85  E-value=0.0028  Score=54.21  Aligned_cols=52  Identities=8%  Similarity=0.075  Sum_probs=34.8

Q ss_pred             CCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceeccccc-ccceeeeccCCCcccceeeEEeee
Q psy2305         258 CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQD-CTNGVRWKHHKFERDLLVADATCS  326 (334)
Q Consensus       258 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~s~~~~~~~~~l~t~~  326 (334)
                      .+.++++++.||.++-+|.+++            +.+-++.-... .-.=+.|  ..||.   +|+++..
T Consensus       474 agglVf~G~~dg~l~A~Da~tG------------e~lW~~~l~~~~~a~P~ty--~~dGk---qYi~v~~  526 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDG------------KELWNFKMPSGGIGSPMTY--SFKGK---QYIGSMY  526 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTC------------CEEEEEECSSCCCSCCEEE--EETTE---EEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCC------------cEEEEEECCCCceecceEE--EECCE---EEEEEEe
Confidence            4567788999999999999999            56655543222 1222667  66873   5665544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.82  E-value=0.0068  Score=51.84  Aligned_cols=52  Identities=15%  Similarity=0.227  Sum_probs=34.4

Q ss_pred             CCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccccc-eeeeccCCCcccceeeEEeee
Q psy2305         258 CSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDCTN-GVRWKHHKFERDLLVADATCS  326 (334)
Q Consensus       258 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~s~~~~~~~~~l~t~~  326 (334)
                      .|.++++|+.||.++.+|.+++            +.+-++....+... =+.|  ..+|.   +|++..+
T Consensus       487 agglVF~G~~dg~l~A~Da~TG------------e~LW~~~~~~~~~~~P~ty--~~~Gk---QYv~v~~  539 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATG------------EKLWEAPTGTGVVAAPSTY--MVDGR---QYVSVAV  539 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTC------------CEEEEEECSSCCCSCCEEE--EETTE---EEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCC------------cEeEEEECCCCccccCEEE--EECCE---EEEEEEe
Confidence            5778888999999999999999            56655543332111 1556  66772   4555543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.74  E-value=0.0068  Score=51.67  Aligned_cols=83  Identities=17%  Similarity=0.300  Sum_probs=47.5

Q ss_pred             CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccc
Q psy2305         224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDC  303 (334)
Q Consensus       224 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (334)
                      |.|.-+|+.+ ++.+.++.....   ...-.++-.+.++++|+.||.++-+|.+++            +.+-++......
T Consensus       438 G~l~A~D~~t-Gk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tG------------e~LW~~~l~~~~  501 (560)
T d1kv9a2         438 GALLAWDPVK-QKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKG------------EALWQFEAQSGI  501 (560)
T ss_dssp             EEEEEEETTT-TEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTC------------CEEEEEECSSCC
T ss_pred             cceEEEeCCC-CeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCC------------cEeEEEECCCCc
Confidence            4566777776 555544432211   100012234668888999999999999999            566555433221


Q ss_pred             c-ceeeeccCCCcccceeeEEeeec
Q psy2305         304 T-NGVRWKHHKFERDLLVADATCSG  327 (334)
Q Consensus       304 i-~~~~~~~s~~~~~~~~~l~t~~~  327 (334)
                      . .=+.|  ..+|.   +||+..+.
T Consensus       502 ~~~P~ty--~~dGk---qyv~v~aG  521 (560)
T d1kv9a2         502 VAAPMTF--ELAGR---QYVAIMAG  521 (560)
T ss_dssp             CSCCEEE--EETTE---EEEEEEEC
T ss_pred             cccCEEE--EECCE---EEEEEEeC
Confidence            1 12556  56773   56665443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.53  E-value=0.013  Score=46.38  Aligned_cols=190  Identities=11%  Similarity=0.004  Sum_probs=103.1

Q ss_pred             ceecCCCcEEEEeeC------------CCcEEEEeCCCCee-eEEEcCccc--cccccceeEEEE--cCCCCE-EEEe--
Q psy2305          71 SSIDGFTSYFLCSSM------------YAPIHLWDSVGGEI-KATYRPYNQ--VDEVTHAYSLAF--SLDGNK-IYAG--  130 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~------------d~~i~iwd~~~~~~-~~~~~~~~~--~~~~~~v~~~~~--~~~~~~-l~~~--  130 (334)
                      ++..|+|..+++++.            .|.|.++|+++.+. ...+.....  ....-....+.+  .++|+. |++.  
T Consensus        40 i~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH  119 (340)
T d1v04a_          40 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH  119 (340)
T ss_dssp             EEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred             EEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEec
Confidence            445778887776642            38899999876532 222211100  000002344444  456653 4433  


Q ss_pred             --eCCcEEEEEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEee-----------------cCCeEEEEECCCC
Q psy2305         131 --FLSEVKIFSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGT-----------------YSKIIGLFSDSDG  191 (334)
Q Consensus       131 --~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~  191 (334)
                        ...+|.+|++...+..+..............+++++..++. +++|-.                 ..+.+..||  .+
T Consensus       120 ~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~--~~  196 (340)
T d1v04a_         120 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS--PN  196 (340)
T ss_dssp             STTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC--SS
T ss_pred             cCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEc--CC
Confidence              25689999987645443322111122234578899988887 777721                 112344444  33


Q ss_pred             CceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEee
Q psy2305         192 RPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSG  265 (334)
Q Consensus       192 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~  265 (334)
                      +. ......-...+.++++|++++|+++....+.|+.|++...+. +............-.+.+.+++..+.++
T Consensus       197 ~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~-l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         197 DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             CE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             ce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcc-cceEEEecCCCCCCccEEecCCCEEEEE
Confidence            33 222223345789999999998887765788999999986333 2222111123344456676643333333

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.49  E-value=0.024  Score=48.57  Aligned_cols=160  Identities=13%  Similarity=0.031  Sum_probs=85.8

Q ss_pred             cEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee------CCC
Q psy2305          14 TCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS------MYA   87 (334)
Q Consensus        14 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~------~d~   87 (334)
                      .+++.++.|+.|.-.|.++++....+......           ....++.   .|   . -.++ .++++.      ..|
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~-----------~~~~~t~---~P---~-v~~~-~vivg~~~~e~~~~G  182 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIK-----------VGSTLTI---AP---Y-VVKD-KVIIGSSGAELGVRG  182 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGG-----------GTCBCCS---CC---E-EETT-EEEECCBCGGGTCCC
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccc-----------ccccccc---CC---c-EECC-eEEEeeccccccccC
Confidence            46888888999999999999876322111000           0000000   00   0 0033 344443      248


Q ss_pred             cEEEEeCCCCeeeEEEcCcccc---------------------------------ccccceeEEEEcCCCCEEEEee---
Q psy2305          88 PIHLWDSVGGEIKATYRPYNQV---------------------------------DEVTHAYSLAFSLDGNKIYAGF---  131 (334)
Q Consensus        88 ~i~iwd~~~~~~~~~~~~~~~~---------------------------------~~~~~v~~~~~~~~~~~l~~~~---  131 (334)
                      .|+-+|+.+|+++..+......                                 .....-..+++.+...+++.+.   
T Consensus       183 ~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~  262 (596)
T d1w6sa_         183 YLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNP  262 (596)
T ss_dssp             EEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCC
T ss_pred             ceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccc
Confidence            8999999999998876432100                                 0000112345566666665432   


Q ss_pred             --------------CCcEEEEEcCCCCCeeeeecccccccc-------cceEEEEE-cCCCC--cEEEEeecCCeEEEEE
Q psy2305         132 --------------LSEVKIFSTDRPGRECVSRNLKPWFRK-------NIVSAIAI-NPVHP--DICALGTYSKIIGLFS  187 (334)
Q Consensus       132 --------------d~~i~i~d~~~~~~~~~~~~~~~~~~~-------~~v~~~~~-~~~~~--~~l~~~~~dg~i~i~d  187 (334)
                                    ...+...|+++ ++..-..  ....|.       ....-+.. ..+|+  ..++....+|.++++|
T Consensus       263 ~p~~~~~r~g~n~ys~sivAlD~~T-G~~~W~~--Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlD  339 (596)
T d1w6sa_         263 APWNETMRPGDNKWTMTIFGRDADT-GEAKFGY--QKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD  339 (596)
T ss_dssp             SCSCGGGSCSCCTTSSEEEEEETTT-CCEEEEE--ESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred             ccccccccccccccccccccccccc-ccccccc--cceeccccCCccccceeeeeccccccccccceeccccccceeeec
Confidence                          13466778887 5554432  112221       11222221 23332  2677788899999999


Q ss_pred             CCCCCceE
Q psy2305         188 DSDGRPLF  195 (334)
Q Consensus       188 ~~~~~~~~  195 (334)
                      ..+++.+.
T Consensus       340 r~tG~~i~  347 (596)
T d1w6sa_         340 RTDGALVS  347 (596)
T ss_dssp             TTTCCEEE
T ss_pred             CCCCceee
Confidence            99988764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.48  E-value=0.01  Score=47.65  Aligned_cols=149  Identities=10%  Similarity=0.048  Sum_probs=88.0

Q ss_pred             cCCCcEEEEeeCCC-----------cEEEEeCCCCeeeE--EEcC-ccccccccceeEEEEcCCCCEEEEee--CCcEEE
Q psy2305          74 DGFTSYFLCSSMYA-----------PIHLWDSVGGEIKA--TYRP-YNQVDEVTHAYSLAFSLDGNKIYAGF--LSEVKI  137 (334)
Q Consensus        74 s~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~--~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i  137 (334)
                      ..+|++++.|+.+.           .+.+||..+++...  .... +.+     .....++.+++++++.|.  ...+.+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~-----~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM-----FCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC-----SSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCccc-----ceeEEEEecCCcEEEeecCCCcceeE
Confidence            45788888887431           36789998876432  1211 111     345678899999999885  478999


Q ss_pred             EEcCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecC------CeEEEEECCCCCceEe--e-------ccCC-
Q psy2305         138 FSTDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYS------KIIGLFSDSDGRPLFF--L-------KGHN-  201 (334)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~-------~~~~-  201 (334)
                      ||..+ . .....+ ... ....-...+..++|+ +++.|+.+      ..+.+||..+.+-...  .       ..+. 
T Consensus       103 yd~~~-~-~w~~~~-~~~-~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~  177 (387)
T d1k3ia3         103 YDSSS-D-SWIPGP-DMQ-VARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  177 (387)
T ss_dssp             EEGGG-T-EEEECC-CCS-SCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             ecCcc-C-cccccc-ccc-ccccccceeeecCCc-eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccc
Confidence            99985 2 222111 111 122334677788998 88887643      3689999876532110  0       0000 


Q ss_pred             ----CCeEEEEEccCCcEEEeeecCCCeEEEEEccC
Q psy2305         202 ----GGITHLEFSSNGILLFSGARKDCEIICWDLRN  233 (334)
Q Consensus       202 ----~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~  233 (334)
                          ..-..+...++|+.+..+. .++.+.+++...
T Consensus       178 ~~~~~~~~~~~~~~~G~~~~~g~-~~~~~~~~~~~~  212 (387)
T d1k3ia3         178 LYRSDNHAWLFGWKKGSVFQAGP-STAMNWYYTSGS  212 (387)
T ss_dssp             GGTTTCSCCEEECGGGCEEECCS-SSEEEEEECSTT
T ss_pred             eeeccceeEEEEeCCCCEEEecC-cCCcEEecCccc
Confidence                0011123345777777777 677777777664

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.41  E-value=0.023  Score=46.54  Aligned_cols=246  Identities=8%  Similarity=-0.049  Sum_probs=123.7

Q ss_pred             eeEEEEcCCCcEEEEee-----CCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCc
Q psy2305           4 EEDVDEAPDGTCLLTNS-----NDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTS   78 (334)
Q Consensus         4 V~~~~~sp~~~~l~~~~-----~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~   78 (334)
                      +...++|||++++|.+-     ....++++|+.+++...             ..+..   .....       ++|++|++
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~-------------~~i~~---~~~~~-------~~W~~D~~  183 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP-------------DVLER---VKFSC-------MAWTHDGK  183 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE-------------EEEEE---ECSCC-------EEECTTSS
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecc-------------ccccc---ccccc-------eEEcCCCC
Confidence            34678899999888532     23489999999998651             11111   11123       34477888


Q ss_pred             EEEEeeCC----------------CcEEEEeCCCCee--eEEEcCccccccccceeEEEEcCCCCEEEEe--e--CCcEE
Q psy2305          79 YFLCSSMY----------------APIHLWDSVGGEI--KATYRPYNQVDEVTHAYSLAFSLDGNKIYAG--F--LSEVK  136 (334)
Q Consensus        79 ~l~~~~~d----------------~~i~iwd~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~--d~~i~  136 (334)
                      .|+....+                ..|..+.+.+...  ...+.....   ...+..+..++++++++..  .  .....
T Consensus       184 ~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~---~~~~~~~~~s~d~~~l~i~~~~~~~~~~~  260 (430)
T d1qfma1         184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE---PKWMGGAELSDDGRYVLLSIREGCDPVNR  260 (430)
T ss_dssp             EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC---TTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred             EEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccC---CceEEeeeccCCcceeeEEeeccCCccEE
Confidence            87754332                2577777765432  233332221   1146678889999988732  2  34444


Q ss_pred             EE--EcCCCCCeeeee--cc-cccccccceEEEEEcCCCCcEEEEee---cCCeEEEEECCCCCc--eEee-ccCCCCeE
Q psy2305         137 IF--STDRPGRECVSR--NL-KPWFRKNIVSAIAINPVHPDICALGT---YSKIIGLFSDSDGRP--LFFL-KGHNGGIT  205 (334)
Q Consensus       137 i~--d~~~~~~~~~~~--~~-~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~-~~~~~~i~  205 (334)
                      +|  ++..........  .. ..........-+ -+.++. +++...   .++.|...++.+...  ...+ ..+...+.
T Consensus       261 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~  338 (430)
T d1qfma1         261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDYV-TNEGTV-FTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL  338 (430)
T ss_dssp             EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEE-EEETTE-EEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEE
T ss_pred             EEEeeCCCcccccccccceeEeecccccceEEE-ecCCce-eecccCcccccceeEEecCCCCccccceEEecccCccee
Confidence            44  544311111000  00 111112222222 222333 444332   346777778765432  1233 33444454


Q ss_pred             EEEEccCCcEEEeeecCCC--eEEEEEccCCCccceeecccccCCceEEEEecCCCceEEee--e--cCCcEEEEeCCCC
Q psy2305         206 HLEFSSNGILLFSGARKDC--EIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSG--N--TNGDLSIWNVNTS  279 (334)
Q Consensus       206 ~~~~~~~~~~l~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~--~--~dg~i~iwd~~~~  279 (334)
                      .-.+...+.+|+...+.++  .|+++++.. +........  ....+..+...++...+...  +  .-.++.-+|+.++
T Consensus       339 ~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~-~~~~~~~~~--~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~  415 (430)
T d1qfma1         339 EWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (430)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             eeEEEEECCEEEEEEEcCCEeEEEEEECCC-CcEEEecCC--CCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence            4444444555554432454  478888876 443322221  23344444444555433322  2  1368888999887


Q ss_pred             C
Q psy2305         280 N  280 (334)
Q Consensus       280 ~  280 (334)
                      +
T Consensus       416 ~  416 (430)
T d1qfma1         416 E  416 (430)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.38  E-value=0.02  Score=45.17  Aligned_cols=196  Identities=12%  Similarity=0.086  Sum_probs=109.0

Q ss_pred             cCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEE------cCCCCEEEEee--C---CcEEEEEcCC
Q psy2305          74 DGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAF------SLDGNKIYAGF--L---SEVKIFSTDR  142 (334)
Q Consensus        74 s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~--d---~~i~i~d~~~  142 (334)
                      .|+..+++.....+-|.+||+ .|+.+..+.. .      .+..+..      ......+++++  +   .+|.+|.+..
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~~-G------r~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~  108 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSL-EGKMLHSYHT-G------KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEET-TCCEEEECCS-S------CEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEET
T ss_pred             CcCccEEEEEcCcCCEEEEcC-CCcEEEeccc-C------CcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecC
Confidence            445667777777767999998 4777776643 1      3444433      32333455444  2   3688888874


Q ss_pred             CCCeeeeeccc---ccccccceEEEEE--cCC-CCcEEEEeecCCeEEEEECC---CC----CceEeeccCCCCeEEEEE
Q psy2305         143 PGRECVSRNLK---PWFRKNIVSAIAI--NPV-HPDICALGTYSKIIGLFSDS---DG----RPLFFLKGHNGGITHLEF  209 (334)
Q Consensus       143 ~~~~~~~~~~~---~~~~~~~v~~~~~--~~~-~~~~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~i~~~~~  209 (334)
                      ....+......   .......+..+++  ++. +..++++...+|.+..|.+.   ++    +.++.+. -...+..+.+
T Consensus       109 ~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVv  187 (353)
T d1h6la_         109 KNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAA  187 (353)
T ss_dssp             TTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEE
T ss_pred             cccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEE
Confidence            33333321100   0111224666666  665 44345566778999888773   22    2344454 3457889999


Q ss_pred             ccCCcEEEeeecCCCeEEEEEccCCCcccee----ecccccCCceEEEE--ecCCCc-eEE-eeecCCcEEEEeCCCC
Q psy2305         210 SSNGILLFSGARKDCEIICWDLRNPGCILHT----FPRQVSTNQRVYFD--LTSCSN-YLL-SGNTNGDLSIWNVNTS  279 (334)
Q Consensus       210 ~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~--~s~~~~-~l~-~~~~dg~i~iwd~~~~  279 (334)
                      .+....|+.+- ++.-+..++..........    ..+......+-.++  -.+++. ||+ +.-.+++..+||....
T Consensus       188 Dde~~~LyisE-E~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         188 DDEYGSLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             ETTTTEEEEEE-TTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             eCCCCcEEEec-CccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            99888999988 7777766665532111111    11111122233333  233332 544 4445789999998764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=0.028  Score=42.75  Aligned_cols=230  Identities=9%  Similarity=0.083  Sum_probs=136.8

Q ss_pred             EEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEeeC
Q psy2305           6 DVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSSM   85 (334)
Q Consensus         6 ~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~~   85 (334)
                      +.-.+|..+.||.=+ ..++++||+++.+..              +....  .+.|.-=.|-        +.+.|+... 
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~kl--------------ks~~~--~e~VvfWkWi--------s~~~L~lVT-  120 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKM--------------KAHTM--TDDVTFWKWI--------SLNTVALVT-  120 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEE--------------EEEEC--SSCCCEEEES--------SSSEEEEEC-
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhh--------------ceEEc--CCCcEEEEec--------CCCEEEEEc-
Confidence            345678888777665 458999999988765              22222  2344334552        334555554 


Q ss_pred             CCcEEEEeCCCC-eeeEEEcCccccccccceeEEEEcCCCCEEE-Ee--e-----CCcEEEEEcCCCCCeeeeecccccc
Q psy2305          86 YAPIHLWDSVGG-EIKATYRPYNQVDEVTHAYSLAFSLDGNKIY-AG--F-----LSEVKIFSTDRPGRECVSRNLKPWF  156 (334)
Q Consensus        86 d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~-----d~~i~i~d~~~~~~~~~~~~~~~~~  156 (334)
                      +..|+-|+++.. ...+.+..+.... ...|-....+++.++++ +|  .     .|.+.+|..+.  +..+    .+.+
T Consensus       121 ~taVYHW~~~g~s~P~k~fdR~~~L~-~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er--~~sQ----~ieG  193 (327)
T d1utca2         121 DNAVYHWSMEGESQPVKMFDRHSSLA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQ----PIEG  193 (327)
T ss_dssp             SSEEEEEESSSSCCCEEEEECCGGGT-TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT--TEEE----EECC
T ss_pred             CCceEEEcccCCCCchhhhhhccccc-CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc--CcCc----cccc
Confidence            456999998542 3566666655433 33788888999999887 33  1     36788999884  3333    4677


Q ss_pred             cccceEEEEEcCCC--CcEEEEee---cCCeEEEEECCCCC---c-----eEee----ccCCCCeEEEEEccCCcEEEee
Q psy2305         157 RKNIVSAIAINPVH--PDICALGT---YSKIIGLFSDSDGR---P-----LFFL----KGHNGGITHLEFSSNGILLFSG  219 (334)
Q Consensus       157 ~~~~v~~~~~~~~~--~~~l~~~~---~dg~i~i~d~~~~~---~-----~~~~----~~~~~~i~~~~~~~~~~~l~~~  219 (334)
                      |......+.+.-+.  ..+++.+.   ..+++++.++....   .     ...+    .....-..++..++.-..++.-
T Consensus       194 haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi  273 (327)
T d1utca2         194 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  273 (327)
T ss_dssp             SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence            75554444433221  11444332   23689999985521   1     1111    1113345578888877788888


Q ss_pred             ecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEE
Q psy2305         220 ARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLS  272 (334)
Q Consensus       220 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~  272 (334)
                      + .-|.+++||+.+ +.++..-.-.  ...+...+-+.+..-++....+|.|.
T Consensus       274 T-K~G~i~lyDleT-gt~i~~nRIs--~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         274 T-KYGYIHLYDLET-GTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             E-TTSEEEEEETTT-CCEEEEEECC--SSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             e-cCcEEEEEEccc-ccEEEEeecC--CCceEEeccCCCCceEEEECCCCeEE
Confidence            8 899999999998 6665543322  33333223333433444445666654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.15  E-value=0.059  Score=45.93  Aligned_cols=81  Identities=12%  Similarity=0.231  Sum_probs=47.4

Q ss_pred             CeEEEEEccCCCccceeecccccCCceEEEEecCCCceEEeeecCCcEEEEeCCCCCCCCCCCccccccccceecccccc
Q psy2305         224 CEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSNYLLSGNTNGDLSIWNVNTSNLPSSPYEESVQEPLYKFSAHQDC  303 (334)
Q Consensus       224 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (334)
                      |.|.-+|+.+ ++.+.+.....   ....-..+..|.++++|+.||.++-+|.+++            +.+-++......
T Consensus       466 G~l~AiD~~T-G~i~W~~~~~~---p~~~g~lstagglVF~Gt~dg~l~A~Da~TG------------e~LW~~~~~~~~  529 (582)
T d1flga_         466 GSLRAMDPVS-GKVVWEHKEHL---PLWAGVLATAGNLVFTGTGDGYFKAFDAKSG------------KELWKFQTGSGI  529 (582)
T ss_dssp             EEEEEECTTT-CCEEEEEEESS---CCCSCCEEETTTEEEEECTTSEEEEEETTTC------------CEEEEEECSSCC
T ss_pred             CeEEEEcCCC-CcEEeecCCCC---CCccceeEEcCCeEEEeCCCCeEEEEECCCC------------cEeEEEECCCCc
Confidence            4566666666 55554443221   1111112345678888999999999999999            666665533221


Q ss_pred             -cceeeeccCCCcccceeeEEee
Q psy2305         304 -TNGVRWKHHKFERDLLVADATC  325 (334)
Q Consensus       304 -i~~~~~~~s~~~~~~~~~l~t~  325 (334)
                       -.=+.|  ..+|.   +|++..
T Consensus       530 ~~~P~ty--~~~G~---qYv~i~  547 (582)
T d1flga_         530 VSPPITW--EQDGE---QYLGVT  547 (582)
T ss_dssp             CSCCEEE--EETTE---EEEEEE
T ss_pred             cccCEEE--EECCE---EEEEEE
Confidence             122667  67772   565544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.08  E-value=0.068  Score=45.40  Aligned_cols=156  Identities=12%  Similarity=0.023  Sum_probs=86.8

Q ss_pred             cEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee------CCcEEEEEcCCCCCeeeeec
Q psy2305          78 SYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF------LSEVKIFSTDRPGRECVSRN  151 (334)
Q Consensus        78 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~  151 (334)
                      ..|+.++.|+.+.-.|.++|+.............. .++.--.-.++..++..+      .|.|.-+|+.+ ++.+....
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~-~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~T-G~~~W~~~  193 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGS-TLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKT-GELKWRAF  193 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTC-BCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTT-CCEEEEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhcccccccccccc-ceeecCeEeCCeEEEeeccccccccCcEEEEECCC-CcEEEEEe
Confidence            35667788999999999999987766542211100 111111112344444221      57899999998 65554321


Q ss_pred             ccc---------------------------------cccccce-EEEEEcCCCCcEEEEeec----------------CC
Q psy2305         152 LKP---------------------------------WFRKNIV-SAIAINPVHPDICALGTY----------------SK  181 (334)
Q Consensus       152 ~~~---------------------------------~~~~~~v-~~~~~~~~~~~~l~~~~~----------------dg  181 (334)
                      ..-                                 ......+ ...++.+... ++..+..                ..
T Consensus       194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g-~~y~~tg~~~p~~~~~r~g~n~~s~  272 (571)
T d2ad6a1         194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcC-eeeeecccccCcccccccccccccc
Confidence            100                                 0000111 2346667666 5555433                34


Q ss_pred             eEEEEECCCCCceEeeccCCCC---------eEEEEEccCCc---EEEeeecCCCeEEEEEccCCCccc
Q psy2305         182 IIGLFSDSDGRPLFFLKGHNGG---------ITHLEFSSNGI---LLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       182 ~i~i~d~~~~~~~~~~~~~~~~---------i~~~~~~~~~~---~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      .+.-.|.++++.+-.++.....         ..-.....+++   .++..+ .+|.+++.|..+ ++++
T Consensus       273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~-k~G~l~vlDr~t-G~~i  339 (571)
T d2ad6a1         273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID-RNGILYTLNREN-GNLI  339 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC-TTSEEEEEETTT-CCEE
T ss_pred             ceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeecc-ccceEEEEecCC-CcEe
Confidence            6788899999988776533221         11222233443   456677 789999999877 5544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.06  E-value=0.045  Score=43.05  Aligned_cols=211  Identities=12%  Similarity=0.155  Sum_probs=112.8

Q ss_pred             CCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEecccceecCCCcEEEEee-CC-C-
Q psy2305          11 PDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYPKTSSIDGFTSYFLCSS-MY-A-   87 (334)
Q Consensus        11 p~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~~~~~l~~~~-~d-~-   87 (334)
                      |+..+++....++-|.+||++..+..               .+   ..+.++.+.-.. .+.+.....-+++++ ++ + 
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~---------------~~---~~Gr~NNVDvr~-~~~l~~~~~di~vasnR~~~~   98 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLH---------------SY---HTGKLNNVDIRY-DFPLNGKKVDIAAASNRSEGK   98 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEE---------------EC---CSSCEEEEEEEE-EEEETTEEEEEEEEEECCTTT
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEE---------------ec---ccCCcCcccccc-ccccCCcceEEEEEeCCcCcc
Confidence            34556666666666999999744432               22   223444443211 111222222344444 32 2 


Q ss_pred             -cEEEEeCCC-CeeeEEEcCcccc--ccccceeEEEE--cCC-CCEE-EEee-CCcEEEEEcCCCCC-eeeeeccccccc
Q psy2305          88 -PIHLWDSVG-GEIKATYRPYNQV--DEVTHAYSLAF--SLD-GNKI-YAGF-LSEVKIFSTDRPGR-ECVSRNLKPWFR  157 (334)
Q Consensus        88 -~i~iwd~~~-~~~~~~~~~~~~~--~~~~~v~~~~~--~~~-~~~l-~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~  157 (334)
                       +|.+|.+.. ...+..+......  .....++.+++  ++. |... ++.. +|.+..|.+...+. .+....+.....
T Consensus        99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~  178 (353)
T d1h6la_          99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM  178 (353)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC
T ss_pred             eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC
Confidence             577776642 2233333322110  11114667776  664 4443 3444 89999888753221 121111112233


Q ss_pred             ccceEEEEEcCCCCcEEEEeecCCeEEEEECCCC-----CceEeecc--CCCCeEEEEEcc--CCc-EEEeeecCCCeEE
Q psy2305         158 KNIVSAIAINPVHPDICALGTYSKIIGLFSDSDG-----RPLFFLKG--HNGGITHLEFSS--NGI-LLFSGARKDCEII  227 (334)
Q Consensus       158 ~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~--~~~~i~~~~~~~--~~~-~l~~~~~~d~~i~  227 (334)
                      ...+..+.+.+... .|..+-++..|..++....     ..+....+  ..+.+..|+.-.  ++. +|++.+..+++..
T Consensus       179 ~~q~EGCVvDde~~-~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~  257 (353)
T d1h6la_         179 NSQTEGMAADDEYG-SLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYA  257 (353)
T ss_dssp             SSCEEEEEEETTTT-EEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             CCccceEEEeCCCC-cEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEE
Confidence            45788899999888 8888888888877776421     12222222  345777887643  333 6666665789999


Q ss_pred             EEEccCCCccceee
Q psy2305         228 CWDLRNPGCILHTF  241 (334)
Q Consensus       228 iwd~~~~~~~~~~~  241 (334)
                      +||...+...+..|
T Consensus       258 vydr~~~~~~~g~F  271 (353)
T d1h6la_         258 IYERQGQNKYVADF  271 (353)
T ss_dssp             EEESSTTCCEEEEE
T ss_pred             EEecCCCccccceE
Confidence            99998644444444

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.01  E-value=0.063  Score=43.80  Aligned_cols=196  Identities=11%  Similarity=0.118  Sum_probs=100.1

Q ss_pred             eecCCCcEEEEee-CC----CcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-C-------------
Q psy2305          72 SIDGFTSYFLCSS-MY----APIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-L-------------  132 (334)
Q Consensus        72 ~~s~~~~~l~~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-------------  132 (334)
                      ++||++++++.+- ..    ..++++|+.+++.+...-. ..     ....++|.+|++.|+... +             
T Consensus       131 ~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~-----~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RV-----KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EE-----CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             EecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cc-----cccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            3489999988542 22    3789999999987642211 11     225789999999877321 1             


Q ss_pred             ---CcEEEEEcCCCCCeeeeecccccc--cccceEEEEEcCCCCcEEEEee---cCC--eEEEEECCCCCc--------e
Q psy2305         133 ---SEVKIFSTDRPGRECVSRNLKPWF--RKNIVSAIAINPVHPDICALGT---YSK--IIGLFSDSDGRP--------L  194 (334)
Q Consensus       133 ---~~i~i~d~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~---~dg--~i~i~d~~~~~~--------~  194 (334)
                         ..|..+.+.++...-..   .+..  ....+..+..+++++ +++...   .+.  .+.+.|+.....        .
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~---v~~e~d~~~~~~~~~~s~d~~-~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  280 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDIL---CAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEE---EECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             CCcceEEEEECCCCcccccc---ccccccCCceEEeeeccCCcc-eeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence               25777777763222111   1222  234566788899999 554322   223  345556543211        1


Q ss_pred             EeeccCCCCeEEEEEccCCcEEEeeec--CCCeEEEEEccCCCcc-ceeecccccCCceEEEEecCCCceEEee-ecCC-
Q psy2305         195 FFLKGHNGGITHLEFSSNGILLFSGAR--KDCEIICWDLRNPGCI-LHTFPRQVSTNQRVYFDLTSCSNYLLSG-NTNG-  269 (334)
Q Consensus       195 ~~~~~~~~~i~~~~~~~~~~~l~~~~~--~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~~-~~dg-  269 (334)
                      ..+.........+. +.++.+++....  .++.|...++..+... ...+-.+ ....+..-.+...+.+|+.. ..++ 
T Consensus       281 ~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~-~~~~~~~~~~~~~~~~lvl~~~~~~~  358 (430)
T d1qfma1         281 KLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE-HEKDVLEWVACVRSNFLVLCYLHDVK  358 (430)
T ss_dssp             EEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECC-CSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             EeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecc-cCcceeeeEEEEECCEEEEEEEcCCE
Confidence            22222233333322 233333333320  2356666777653221 1222222 12223222233444555544 4554 


Q ss_pred             -cEEEEeCCCC
Q psy2305         270 -DLSIWNVNTS  279 (334)
Q Consensus       270 -~i~iwd~~~~  279 (334)
                       .|+++++.++
T Consensus       359 ~~l~v~~~~~~  369 (430)
T d1qfma1         359 NTLQLHDLATG  369 (430)
T ss_dssp             EEEEEEETTTC
T ss_pred             eEEEEEECCCC
Confidence             6888998876

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.75  E-value=0.051  Score=38.88  Aligned_cols=29  Identities=3%  Similarity=0.130  Sum_probs=23.6

Q ss_pred             CCceEEEEecCCCceEEeeecCCcEEEEe
Q psy2305         247 TNQRVYFDLTSCSNYLLSGNTNGDLSIWN  275 (334)
Q Consensus       247 ~~~~~~~~~s~~~~~l~~~~~dg~i~iwd  275 (334)
                      ...+.-+-+.|++++++.+-.||.-++|.
T Consensus       237 p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         237 PTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             CSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             ceEEEeeeeCCCCcEEEEEecCCchheee
Confidence            34455566899999999999999999886

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.53  E-value=0.18  Score=42.52  Aligned_cols=81  Identities=12%  Similarity=0.128  Sum_probs=49.4

Q ss_pred             CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCCc
Q psy2305         181 KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCSN  260 (334)
Q Consensus       181 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  260 (334)
                      |.|.-+|+.+++.+-+.... .+..+-.++-.+.+++.++ .||.++.+|.++ ++.+.++..... ....-+.+..+|+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~-~dg~l~A~Da~t-Ge~LW~~~l~~~-~~~~P~ty~~dGk  513 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGT-AAGQMHAYSADK-GEALWQFEAQSG-IVAAPMTFELAGR  513 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEEC-TTSEEEEEETTT-CCEEEEEECSSC-CCSCCEEEEETTE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEEC-CCCcEEEEECCC-CcEeEEEECCCC-ccccCEEEEECCE
Confidence            56778888888877665421 2222212233456778888 899999999999 888877764321 1111134456775


Q ss_pred             -eEEee
Q psy2305         261 -YLLSG  265 (334)
Q Consensus       261 -~l~~~  265 (334)
                       ||++.
T Consensus       514 qyv~v~  519 (560)
T d1kv9a2         514 QYVAIM  519 (560)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence             55543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.46  E-value=0.61  Score=39.40  Aligned_cols=81  Identities=17%  Similarity=0.184  Sum_probs=52.8

Q ss_pred             CCeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeecccccCCceEEEEecCCC
Q psy2305         180 SKIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVSTNQRVYFDLTSCS  259 (334)
Q Consensus       180 dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  259 (334)
                      .|.|.-+|+.+++.+-+...+. ++.+-..+..|..+++++ .|+.++.+|.++ ++.+.++.-... ....-+.|..+|
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt-~dg~l~A~Da~T-Ge~LW~~~~~~~-~~~~P~ty~~~G  540 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGT-GDGYFKAFDAKS-GKELWKFQTGSG-IVSPPITWEQDG  540 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEEC-TTSEEEEEETTT-CCEEEEEECSSC-CCSCCEEEEETT
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeC-CCCeEEEEECCC-CcEeEEEECCCC-ccccCEEEEECC
Confidence            3678889999998887765332 222222334566888888 899999999999 888877764321 111114456678


Q ss_pred             c-eEEe
Q psy2305         260 N-YLLS  264 (334)
Q Consensus       260 ~-~l~~  264 (334)
                      + |++.
T Consensus       541 ~qYv~i  546 (582)
T d1flga_         541 EQYLGV  546 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            4 5554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.38  E-value=0.17  Score=42.88  Aligned_cols=79  Identities=10%  Similarity=0.151  Sum_probs=50.5

Q ss_pred             CeEEEEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeeccccc-CCceEEEEecCCC
Q psy2305         181 KIIGLFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFPRQVS-TNQRVYFDLTSCS  259 (334)
Q Consensus       181 g~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~  259 (334)
                      |.|.-||+.+++.+-+.+... +...=..+-.|.++++++ .|+.++.+|.++ ++.+.++..... ....  +.|..+|
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~-~dg~l~A~Da~T-Ge~LW~~~~~~~~~~~P--~ty~~~G  531 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGT-ADGRLVAYHAAT-GEKLWEAPTGTGVVAAP--STYMVDG  531 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEEC-TTSEEEEEETTT-CCEEEEEECSSCCCSCC--EEEEETT
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEEC-CCCeEEEEECCC-CcEeEEEECCCCccccC--EEEEECC
Confidence            578889999988877765322 211112233566888888 899999999999 888877764321 1112  3345577


Q ss_pred             c-eEEe
Q psy2305         260 N-YLLS  264 (334)
Q Consensus       260 ~-~l~~  264 (334)
                      + |++.
T Consensus       532 kQYv~v  537 (573)
T d1kb0a2         532 RQYVSV  537 (573)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            5 5444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.36  E-value=0.55  Score=38.24  Aligned_cols=56  Identities=16%  Similarity=0.188  Sum_probs=35.8

Q ss_pred             cccceecCCCcEEEEeeCCCcEEEEeCCCCeeeEEEcCcc---ccccccceeEEEEcCC
Q psy2305          68 PKTSSIDGFTSYFLCSSMYAPIHLWDSVGGEIKATYRPYN---QVDEVTHAYSLAFSLD  123 (334)
Q Consensus        68 ~~~~~~s~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~  123 (334)
                      |..++|.|++++|++--..|.|++++..+++.........   .....+....++|+|+
T Consensus        29 P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             ceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3445668899988876557999999987775543322111   1111126789999996

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.20  E-value=0.54  Score=37.18  Aligned_cols=170  Identities=7%  Similarity=-0.025  Sum_probs=97.6

Q ss_pred             ceecCCCcEEEEeeCCCcEEEEeCC-----------CCeeeEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEE
Q psy2305          71 SSIDGFTSYFLCSSMYAPIHLWDSV-----------GGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFS  139 (334)
Q Consensus        71 ~~~s~~~~~l~~~~~d~~i~iwd~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d  139 (334)
                      +++++...++++|+.++ +.|...+           .........       ...|..++|+.+  .|++..++.+..++
T Consensus        42 LAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~-------ip~v~~vafs~d--~l~v~~~~~l~~~~  111 (381)
T d1xipa_          42 LDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-------IPDVIFVCFHGD--QVLVSTRNALYSLD  111 (381)
T ss_dssp             EEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-------CTTEEEEEEETT--EEEEEESSEEEEEE
T ss_pred             EEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC-------CCCeEEEEeeCC--EEEEEeCCCEEEEE
Confidence            45566666777777775 5565431           111111111       116888999755  57766777888888


Q ss_pred             cCCCCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceEeec-----cCCCCeEEEEEccCCc
Q psy2305         140 TDRPGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLFFLK-----GHNGGITHLEFSSNGI  214 (334)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~~~~~~  214 (334)
                      ...... ..    .......++..+.++|.   .++....++.+.++++..++......     .-.+.+.++.|++.|+
T Consensus       112 ~~~l~~-~~----~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgk  183 (381)
T d1xipa_         112 LEELSE-FR----TVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSF  183 (381)
T ss_dssp             SSSTTC-EE----EEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCE
T ss_pred             eecccc-cc----ccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcE
Confidence            875222 22    12233456888888886   55667778999999998875433221     1235677888888888


Q ss_pred             EEEeeecCCCeEEE-EEccCCCccceeecc-cccCCceEEEEecCCCceEEe
Q psy2305         215 LLFSGARKDCEIIC-WDLRNPGCILHTFPR-QVSTNQRVYFDLTSCSNYLLS  264 (334)
Q Consensus       215 ~l~~~~~~d~~i~i-wd~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~  264 (334)
                      .++++. .++ ..+ -++.. .   ..+.. ......+.++.|-.+..++++
T Consensus       184 q~v~~~-g~~-~q~k~~i~~-~---~~~~~p~~~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         184 QSFAWR-NGE-MEKQFEFSL-P---SELEELPVEEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             EEEEEE-TTE-EEEEEEECC-C---HHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEEeC-CCc-eeeccCCCC-c---cccCCCcCCCcceeEEEEecCceEEEE
Confidence            887765 332 221 12221 1   11111 112345677777766665553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.19  E-value=0.76  Score=38.91  Aligned_cols=156  Identities=12%  Similarity=0.083  Sum_probs=87.9

Q ss_pred             CcEEEEeeCCCcEEEEeCCCCeeeEEEcCccccccccceeEEEEcCCCCEEEEee-------CCcEEEEEcCCCCCeeee
Q psy2305          77 TSYFLCSSMYAPIHLWDSVGGEIKATYRPYNQVDEVTHAYSLAFSLDGNKIYAGF-------LSEVKIFSTDRPGRECVS  149 (334)
Q Consensus        77 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------d~~i~i~d~~~~~~~~~~  149 (334)
                      ..+++.++.|+.|.-.|.++|+.+..+......... .++.--.--++. ++.+.       .|.|+-+|..+ ++.+-.
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~-~~t~~P~v~~~~-vivg~~~~e~~~~G~v~A~Da~T-G~~~W~  197 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGS-TLTIAPYVVKDK-VIIGSSGAELGVRGYLTAYDVKT-GEQVWR  197 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTC-BCCSCCEEETTE-EEECCBCGGGTCCCEEEEEETTT-CCEEEE
T ss_pred             ceEEEEEeCCCCeEeeccccCceecccccccccccc-ccccCCcEECCe-EEEeeccccccccCceEEEECCC-CcEEEE
Confidence            346888888999999999999998887542211100 111110111333 44331       38899999998 666543


Q ss_pred             ecccc----------------------------------cccccceEEEEEcCCCCcEEEEeec----------------
Q psy2305         150 RNLKP----------------------------------WFRKNIVSAIAINPVHPDICALGTY----------------  179 (334)
Q Consensus       150 ~~~~~----------------------------------~~~~~~v~~~~~~~~~~~~l~~~~~----------------  179 (334)
                      .....                                  .+....-..+++.+... ++..+..                
T Consensus       198 ~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~-lvy~~tg~~~p~~~~~r~g~n~y  276 (596)
T d1w6sa_         198 AYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKW  276 (596)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTT
T ss_pred             eeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCC-eeecccccccccccccccccccc
Confidence            21100                                  00011122445666666 5555432                


Q ss_pred             CCeEEEEECCCCCceEeecc--CC-------CCeEEEEE-ccCCc---EEEeeecCCCeEEEEEccCCCccc
Q psy2305         180 SKIIGLFSDSDGRPLFFLKG--HN-------GGITHLEF-SSNGI---LLFSGARKDCEIICWDLRNPGCIL  238 (334)
Q Consensus       180 dg~i~i~d~~~~~~~~~~~~--~~-------~~i~~~~~-~~~~~---~l~~~~~~d~~i~iwd~~~~~~~~  238 (334)
                      ...|.-.|+++++.+-.++.  |.       ....-+.. ..+|+   .++... .+|.+.++|..+ ++++
T Consensus       277 s~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~-k~G~~~vlDr~t-G~~i  346 (596)
T d1w6sa_         277 TMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD-RNGIVYTLDRTD-GALV  346 (596)
T ss_dssp             SSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC-TTSEEEEEETTT-CCEE
T ss_pred             cccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccc-cccceeeecCCC-Ccee
Confidence            24588889999998776643  21       11111221 23443   566777 789999999887 5544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.08  E-value=0.58  Score=36.96  Aligned_cols=140  Identities=11%  Similarity=-0.093  Sum_probs=85.7

Q ss_pred             ceeEEEEcCCCCEEEEeeCCcEEEEEcCC---------CCCeeeeecccccccccceEEEEEcCCCCcEEEEeecCCeEE
Q psy2305         114 HAYSLAFSLDGNKIYAGFLSEVKIFSTDR---------PGRECVSRNLKPWFRKNIVSAIAINPVHPDICALGTYSKIIG  184 (334)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  184 (334)
                      ...-++.++...++++|+...+.+..+..         .+....     ....-..|..++|+.+   .++.. .++.+.
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~-----~~~~ip~v~~vafs~d---~l~v~-~~~~l~  108 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFK-----WEKEIPDVIFVCFHGD---QVLVS-TRNALY  108 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCS-----EEEECTTEEEEEEETT---EEEEE-ESSEEE
T ss_pred             ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcce-----eccCCCCeEEEEeeCC---EEEEE-eCCCEE
Confidence            56678888887788877755677776431         011111     1111235888999755   45443 466788


Q ss_pred             EEECCCCCceEeeccCCCCeEEEEEccCCcEEEeeecCCCeEEEEEccCCCccceeec---ccccCCceEEEEecCCCce
Q psy2305         185 LFSDSDGRPLFFLKGHNGGITHLEFSSNGILLFSGARKDCEIICWDLRNPGCILHTFP---RQVSTNQRVYFDLTSCSNY  261 (334)
Q Consensus       185 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~  261 (334)
                      .++..+-........-..++..+.+.|.  .++... .++.+.++++.. +.......   .-.-.....++.|++.|+.
T Consensus       109 ~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~-~~~~~~~~~l~~-~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq  184 (381)
T d1xipa_         109 SLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILN-SVNDLSALDLRT-KSTKQLAQNVTSFDVTNSQLAVLLKDRSFQ  184 (381)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEE-TTSEEEEEETTT-CCEEEEEESEEEEEECSSEEEEEETTSCEE
T ss_pred             EEEeeccccccccccccccccceecCCc--eeEEEe-cCCCEEEEEecc-CccccccCCcceEEecCCceEEEEeCCcEE
Confidence            8887665444444444567888888775  455556 689999999987 33221111   1111345677888888888


Q ss_pred             EEeee
Q psy2305         262 LLSGN  266 (334)
Q Consensus       262 l~~~~  266 (334)
                      ++++.
T Consensus       185 ~v~~~  189 (381)
T d1xipa_         185 SFAWR  189 (381)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            87764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.25  E-value=1.1  Score=36.38  Aligned_cols=108  Identities=11%  Similarity=0.039  Sum_probs=60.5

Q ss_pred             cceEEEEEcCCCCcEEEEeecCCeEEEEECCCCCceE--ee------ccCCCCeEEEEEccC---CcEEEeeec------
Q psy2305         159 NIVSAIAINPVHPDICALGTYSKIIGLFSDSDGRPLF--FL------KGHNGGITHLEFSSN---GILLFSGAR------  221 (334)
Q Consensus       159 ~~v~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~------~~~~~~i~~~~~~~~---~~~l~~~~~------  221 (334)
                      ...++|+|.|+++ ++++--..|.|++++..+++...  .+      ....+....|+|+|+   ..+|+....      
T Consensus        27 ~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          27 NKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            4567999999998 77765457999999987765322  21      112356789999995   334443210      


Q ss_pred             CC----C--eEEEEEccCCCccc------eeecccccCCceEEEEecCCCceEEeeec
Q psy2305         222 KD----C--EIICWDLRNPGCIL------HTFPRQVSTNQRVYFDLTSCSNYLLSGNT  267 (334)
Q Consensus       222 ~d----~--~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~s~~~~~l~~~~~  267 (334)
                      .+    .  .+..+.........      ............-.+.|.|||.+.++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            01    1  13333433211110      01111112344567899999987776553

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=90.82  E-value=1.8  Score=30.19  Aligned_cols=149  Identities=9%  Similarity=-0.059  Sum_probs=76.1

Q ss_pred             CceeEEEEcCCCcEEEEeeCCCeEEEEECCCCCceeeeeCCCCCCCCcceeeeeeeceeEEEEEEec-ccceecCCCcEE
Q psy2305           2 DIEEDVDEAPDGTCLLTNSNDNHLRTFDLPSELHCKSVWRPSNQRPKLNYTLKIKEGGIIYDYVWYP-KTSSIDGFTSYF   80 (334)
Q Consensus         2 d~V~~~~~sp~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~s~~~~~l   80 (334)
                      +-+.-|+|||+|++.++-.  +.++.=...+....               .. ......|-+..|.. ..+-|+|.|-+.
T Consensus        40 ~n~~~i~fsP~G~LyaVr~--~~lY~Gp~~s~~nq---------------~w-f~~atrIG~ggWn~FkflffdP~G~Ly  101 (235)
T d1tl2a_          40 SNFKFLFLSPGGELYGVLN--DKIYKGTPPTHDND---------------NW-MGRAKKIGNGGWNQFQFLFFDPNGYLY  101 (235)
T ss_dssp             TTCSEEEECTTSCEEEEET--TEEEEESCCCSTTC---------------CH-HHHCEEEECSCGGGCSEEEECTTSCEE
T ss_pred             cceeEEEECCCCcEEEEEC--CeEEECCCCCcchH---------------HH-HHhhhhcccCcccceEEEEECCCceEE
Confidence            4567899999999776643  34444333332221               00 11223344444433 235678999766


Q ss_pred             EEeeCCCcEEEEeCCCCee------eEEEcCccccccccceeEEEEcCCCCEEEEeeCCcEEEEEcCCCCCe-eeeeccc
Q psy2305          81 LCSSMYAPIHLWDSVGGEI------KATYRPYNQVDEVTHAYSLAFSLDGNKIYAGFLSEVKIFSTDRPGRE-CVSRNLK  153 (334)
Q Consensus        81 ~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~-~~~~~~~  153 (334)
                      ++.  ++.++-=...+.++      ...+-...-    ..+..+-|.|+|.+.++.++ .+.-+........ -......
T Consensus       102 aVt--~~~LYr~~pPtn~~q~W~g~a~~vG~~gw----~df~~lFFdP~G~LYaV~~~-~l~k~~pP~~~~d~WL~~st~  174 (235)
T d1tl2a_         102 AVS--KDKLYKASPPQSDTDNWIARATEVGSGGW----SGFKFLFFHPNGYLYAVHGQ-QFYKALPPVSNQDNWLARATK  174 (235)
T ss_dssp             EEE--TTEEEEESCCCSTTCCHHHHSEEEECSSG----GGEEEEEECTTSCEEEEETT-EEEEECCCSSTTCCHHHHCEE
T ss_pred             Eec--CcceecCCcCcccchhhhhhhhhhccCCc----CceeEEEECCCceEEEEECC-cEEEcCCCCCCCchhhhhhhh
Confidence            665  35333322222221      111111111    15778999999987777555 4555554431110 0000001


Q ss_pred             c-cccccceEEEEEcCCCCcEEEE
Q psy2305         154 P-WFRKNIVSAIAINPVHPDICAL  176 (334)
Q Consensus       154 ~-~~~~~~v~~~~~~~~~~~~l~~  176 (334)
                      + .++-...+-+.|+|+|. +..+
T Consensus       175 igr~~w~~~~fi~Fs~dG~-L~~v  197 (235)
T d1tl2a_         175 IGQGGWDTFKFLFFSSVGT-LFGV  197 (235)
T ss_dssp             EESSSGGGEEEEEECTTSC-EEEE
T ss_pred             hccCcccCceEEEECCCCc-EEEE
Confidence            1 24455667899999998 5554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.39  E-value=5.4  Score=29.27  Aligned_cols=22  Identities=14%  Similarity=0.339  Sum_probs=16.4

Q ss_pred             CCceEEeeecCC-----cEEEEeCCCC
Q psy2305         258 CSNYLLSGNTNG-----DLSIWNVNTS  279 (334)
Q Consensus       258 ~~~~l~~~~~dg-----~i~iwd~~~~  279 (334)
                      ++++++.|+.++     .+.+||+.+.
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCEEEEEecCCCCeecceEEEEECCCC
Confidence            678888877653     4788998875