Psyllid ID: psy2324

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMPLLGSNPGPPDYQASAWKIGLI
Secondary Structure (PSIPRED)
ccHHHHHHcccccccccEEEccccHHHHHHHHcccccccccccccccEEEEcccccHHHHHHHcccccEEEEEEcccccHHHHHHcccEEEEEcEEEEEccccccccccccEEEcccccHHHHHHHHHccccccEEEEEEEEcccccccEEccccccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccccccccHHHccccHHHHHHcccEcccccEcccccEEEEEEEccHHHHHHHccccEEEEEEccccccHHHHHccccEEEEEcEEEEEccccEEEccccccEEccccccEEEEEccHccccccEEEEEEEEEccccccccccccccccHHHHHHHEccc
Coil and Loop (DISEMBL)
KIPEAILSNIKHQInlgvhtelltpgVIKLFNsgvinnskksidrGQITATlllgdkplydfvhnnelvqmkrgtysndpaiirqnhrMTAINTCleiditgqvvsdslgtriysgfggqvdfmrgaltgldgkglKYQILVhednsmpllgsnpgppdyqasawkigli
Flexible Loop (DISEMBL)
KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMPLLgsnpgppdyqaSAWKIGLI
Low Complexity Region (SEG)
KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMPLLGSNPGPPDYQASAWKIGLI
Disordered region (IsUnstruct)
*****ILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHE**************************
Disordered Region (DISOPRED)
KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQ***************PGPPDYQAS*WKIGLI
Disordered Region (DISEMBL)
KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMPLLGSNPGPPDYQASAWKIGLI
Disordered Region (DISPRO)
KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMPLLGSNPGPPDYQASAWKIGLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMPLLGSNPGPPDYQASAWKIGLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
P38942	429	4-hydroxybutyrate coenzym	no	N/A	0.794	0.314	0.466	5e-32
P83773	524	Acetyl-CoA hydrolase OS=C	N/A	N/A	0.641	0.208	0.346	7e-07
Q6FPF3	526	Acetyl-CoA hydrolase OS=C	yes	N/A	0.629	0.203	0.301	5e-05
P32316	526	Acetyl-CoA hydrolase OS=S	yes	N/A	0.617	0.199	0.290	9e-05
Q6BKW1	523	Acetyl-CoA hydrolase OS=D	yes	N/A	0.617	0.200	0.307	0.0001
Q6CNR2	523	Acetyl-CoA hydrolase OS=K	yes	N/A	0.611	0.198	0.279	0.0001
Q754Q2	523	Acetyl-CoA hydrolase OS=A	yes	N/A	0.635	0.206	0.289	0.0003
Q9UUJ9	521	Acetyl-CoA hydrolase OS=S	yes	N/A	0.711	0.232	0.294	0.0004
P38946	538	Succinyl-CoA:coenzyme A t	no	N/A	0.623	0.197	0.291	0.0004

>sp|P38942|CAT2_CLOK5 4-hydroxybutyrate coenzyme A transferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=cat2 PE=3 SV=3

 Score =  136 bits (343), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 97/135 (71%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+L  +K++ NLG+H+E+++ GV++L  +GVINN KK++  G+I  T L+G K LYD
Sbjct: 219 IPDAVLLFLKNKKNLGIHSEMISDGVMELVKAGVINNKKKTLHPGKIVVTFLMGTKKLYD 278

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           FV+NN +V+     Y N+P +I +N  M +IN+C+++D+ GQV S+S+G +  SG GGQV
Sbjct: 279 FVNNNPMVETYSVDYVNNPLVIMKNDNMVSINSCVQVDLMGQVCSESIGLKQISGVGGQV 338

Query: 122 DFMRGALTGLDGKGL 136
           DF+RGA     GK +
Sbjct: 339 DFIRGANLSKGGKAI 353

Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) (taxid: 431943)
EC: 2EC: .EC: 8EC: .EC: 3EC: .EC: -

>sp|P83773|ACH1_CANAL Acetyl-CoA hydrolase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ACH1 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 15/124 (12%)

Query: 8   SNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGD--KPLYD-FVH 64
           SN K   NL V TE+L    +  F SG       S+D    T+  L  D  K  YD +  
Sbjct: 290 SNFK---NLTVWTEVLQDSFLDFFESG-------SLDYATATSIRLTNDGFKKFYDNWDT 339

Query: 65  NNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVS-DSLGTRIYSGFGGQVDF 123
            ++ + ++    SN P IIR+   + A+NT +E+DI G   S + +G+R+ +G GG  DF
Sbjct: 340 YSKKLCLRSQVVSNSPEIIRR-LGVIAMNTPVEVDIYGHANSTNVMGSRMLNGLGGSADF 398

Query: 124 MRGA 127
           +R A
Sbjct: 399 LRNA 402

Presumably involved in regulating the intracellular acetyl-CoA pool for fatty acid and cholesterol synthesis and fatty acid oxidation.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|Q6FPF3|ACH1_CANGA Acetyl-CoA hydrolase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ACH1 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 19/126 (15%)

Query: 8   SNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNN- 66
           +N KH   L V TE+L    + LF +G ++ +         TAT +   +P ++ V  N 
Sbjct: 292 ANFKH---LNVWTEVLQDSFLDLFENGSLDYA---------TATSIRLTEPGFERVFKNW 339

Query: 67  ----ELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQV 121
                 + ++    SN+P +IR+   + A+NT +E DI     S ++ G+R+ +G GG  
Sbjct: 340 DFYKSRLCLRSQVVSNNPELIRR-LGVIAMNTPVEADIYAHANSTNVNGSRMLNGLGGSA 398

Query: 122 DFMRGA 127
           DF+R A
Sbjct: 399 DFLRNA 404

Presumably involved in regulating the intracellular acetyl-CoA pool for fatty acid and cholesterol synthesis and fatty acid oxidation.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P32316|ACH1_YEAST Acetyl-CoA hydrolase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ACH1 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 12/117 (10%)

Query: 15  NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLG---DKPLYDFVHNNELVQM 71
           +L V TE+L    + LF +G       S+D    T+  L     D+   ++ +    + +
Sbjct: 296 HLTVWTEVLQDSFLDLFENG-------SLDYATATSVRLTEKGFDRAFANWENFKHRLCL 348

Query: 72  KRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGA 127
           +    SN+P +IR+   + A+NT +E+DI     S ++ G+R+ +G GG  DF+R A
Sbjct: 349 RSQVVSNNPEMIRR-LGVIAMNTPVEVDIYAHANSTNVNGSRMLNGLGGSADFLRNA 404

Presumably involved in regulating the intracellular acetyl-CoA pool for fatty acid and cholesterol synthesis and fatty acid oxidation. It may be involved in overall regulation of acetylation during melatonin synthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|Q6BKW1|ACH1_DEBHA Acetyl-CoA hydrolase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ACH1 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 12/117 (10%)

Query: 15  NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLG---DKPLYDFVHNNELVQM 71
           NL V TE+L    +  F SG       S+D    T+  L     DK   ++   ++ + +
Sbjct: 293 NLTVWTEVLQDSFLDFFESG-------SLDFATATSIRLTEAGFDKFYENWDTYSKKLCL 345

Query: 72  KRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVS-DSLGTRIYSGFGGQVDFMRGA 127
           +    SN P IIR+   + A+NT +E+DI     S + +G+R+ +G GG  DF+R +
Sbjct: 346 RSQVVSNSPEIIRRLGTI-AMNTPVEVDIYAHANSTNVMGSRMLNGLGGSADFLRNS 401

Presumably involved in regulating the intracellular acetyl-CoA pool for fatty acid and cholesterol synthesis and fatty acid oxidation.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|Q6CNR2|ACH1_KLULA Acetyl-CoA hydrolase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ACH1 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 14/118 (11%)

Query: 15  NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHN----NELVQ 70
           NL V TE+L    + LF +G ++ +  +        ++ L +     F  N    ++ + 
Sbjct: 296 NLTVWTEVLQDSFLDLFENGALDYATAT--------SIRLTEAGFQKFFDNWDDFSKKLC 347

Query: 71  MKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGA 127
           ++    SN+P +IR+   + A+NT +E+DI     S ++ G+R+ +G GG  DF+R A
Sbjct: 348 LRSQVVSNNPELIRR-LGVIAMNTPVEVDIYAHANSTNVSGSRMLNGLGGSADFLRNA 404

Presumably involved in regulating the intracellular acetyl-CoA pool for fatty acid and cholesterol synthesis and fatty acid oxidation.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|Q754Q2|ACH1_ASHGO Acetyl-CoA hydrolase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ACH1 PE=3 SV=3

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 6/114 (5%)

Query: 15  NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRG 74
           NL V TE+L    + LF +G +  +  +     I  T    +K   ++   +  + ++  
Sbjct: 296 NLTVWTEVLQDSFLDLFENGSLEFATAT----SIRLTEAGFEKFFANWDEYSSKLCLRSQ 351

Query: 75  TYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGA 127
             SN P +IR+   + A+NT +E+DI     S ++ G+R+ +G GG  DF+R A
Sbjct: 352 VVSNSPEMIRRLG-VIAMNTPVEVDIYAHANSTNVSGSRMLNGLGGSADFLRNA 404

Presumably involved in regulating the intracellular acetyl-CoA pool for fatty acid and cholesterol synthesis and fatty acid oxidation.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|Q9UUJ9|ACH1_SCHPO Acetyl-CoA hydrolase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ach1 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 2   IPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPL 59
           I  AI+  + H    +L V TE+L    + LF+S  +  +  +  R          +K  
Sbjct: 280 IANAIIGGLAHSPFKDLEVWTEVLQDTFLPLFDSEKLRFATATSTRFSPQGF----EKFY 335

Query: 60  YDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVS-DSLGTRIYSGFG 118
            ++ +  E + ++    SN P IIR+     A+NT +E DI     S + LG+R+ +G G
Sbjct: 336 SNYDYYKERILLRPQVISNHPEIIRR-LGCIAMNTPVEADIYAHANSTNVLGSRMLNGLG 394

Query: 119 GQVDFMRGA 127
           G  DF+R A
Sbjct: 395 GSADFLRNA 403

Presumably involved in regulating the intracellular acetyl-CoA pool for fatty acid and cholesterol synthesis and fatty acid oxidation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

>sp|P38946|CAT1_CLOK5 Succinyl-CoA:coenzyme A transferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=cat1 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 21/127 (16%)

Query: 8   SNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKP--LYDFVHN 65
           SN K   NL  +TE++   ++KL   G          +  + +   +   P  L +F+ +
Sbjct: 320 SNFK---NLSCYTEVIQDSMLKLIKCG----------KADVVSGTSISPSPEMLPEFIKD 366

Query: 66  ----NELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFGGQ 120
                E + ++    SN+P I R+   + +INT LE+DI G V S   +G+++ +G GG 
Sbjct: 367 INFFREKIVLRPQEISNNPEIARR-IGVISINTALEVDIYGNVNSTHVMGSKMMNGIGGS 425

Query: 121 VDFMRGA 127
            DF R A
Sbjct: 426 GDFARNA 432

Forms succinyl-CoA from succinate and acetyl-CoA.

Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) (taxid: 431943)

EC: 2

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
405966123	469	4-hydroxybutyrate coenzyme A transferase	0.788	0.285	0.544	1e-37
194746106	480	GF16210 [Drosophila ananassae] gi|190628	0.794	0.281	0.518	1e-37
195399618	477	GJ14323 [Drosophila virilis] gi|19414197	0.794	0.283	0.518	1e-37
194905813	477	GG11976 [Drosophila erecta] gi|190655900	0.794	0.283	0.518	1e-37
195505025	477	GE23426 [Drosophila yakuba] gi|194185432	0.794	0.283	0.518	2e-37
195451691	476	GK13373 [Drosophila willistoni] gi|19416	0.794	0.283	0.503	2e-37
195053956	473	GH22150 [Drosophila grimshawi] gi|193895	0.794	0.285	0.511	3e-37
195574957	477	GD17454 [Drosophila simulans] gi|1942013	0.794	0.283	0.518	4e-37
21358615	477	CG7920, isoform A [Drosophila melanogast	0.794	0.283	0.518	4e-37
156546092	470	PREDICTED: 4-hydroxybutyrate coenzyme A	0.788	0.285	0.514	7e-37

>gi|405966123|gb|EKC31441.1| 4-hydroxybutyrate coenzyme A transferase [Crassostrea gigas]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/134 (54%), Positives = 105/134 (78%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+LS + H  NLGVH+E+ + GV++L   GVI NS+KSI  G++ ++  +G K LY+
Sbjct: 252 IPDAVLSQLGHHKNLGVHSEMFSDGVVELVEKGVITNSEKSILTGRLVSSFSVGTKILYN 311

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           F++NN  V+M+   ++N+ AII QN RMTAIN+C+E+D+TGQV +DS+G R+YSGFGGQ+
Sbjct: 312 FLNNNPSVEMRDVEFTNNVAIICQNPRMTAINSCIEVDLTGQVCADSIGERLYSGFGGQI 371

Query: 122 DFMRGALTGLDGKG 135
           DF+RGA  GLDG+G
Sbjct: 372 DFIRGAAVGLDGEG 385

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|194746106|ref|XP_001955525.1| GF16210 [Drosophila ananassae] gi|190628562|gb|EDV44086.1| GF16210 [Drosophila ananassae]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 102/135 (75%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+L+ + +  +LG+H+E+   GV+ L   G + NSKK + +G+I  + L+GD+PLYD
Sbjct: 262 IPDAVLAALHNHKDLGIHSEMFANGVVDLVKKGCVTNSKKKMHQGRIVGSFLIGDQPLYD 321

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           FV++N  ++M    Y N+ +I++Q  RMTAIN+C+E+D+TGQV SDS+GTR YSGFGGQV
Sbjct: 322 FVNDNPFIEMYAIDYVNNTSIVKQQPRMTAINSCIEVDLTGQVCSDSIGTRFYSGFGGQV 381

Query: 122 DFMRGALTGLDGKGL 136
           DF+RGA  GLDG G+
Sbjct: 382 DFIRGAAEGLDGLGV 396

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195399618|ref|XP_002058416.1| GJ14323 [Drosophila virilis] gi|194141976|gb|EDW58384.1| GJ14323 [Drosophila virilis]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 100/135 (74%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+L+ + +  +LG+H+E+   GV+ L   G + NSKK + +G+I  + L+GD+PLYD
Sbjct: 259 IPDAVLAALHNHKDLGIHSEMFANGVVDLVKKGCVTNSKKKMHQGRIVGSFLIGDQPLYD 318

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           FV+NN  ++M    Y N+  I++Q  RMTAIN+C+E+D+TGQV SDS+GTR YSGFGGQV
Sbjct: 319 FVNNNPFIEMLAIDYVNNTGIVKQQPRMTAINSCIEVDVTGQVCSDSIGTRFYSGFGGQV 378

Query: 122 DFMRGALTGLDGKGL 136
           DF+RGA  G DG G+
Sbjct: 379 DFIRGAAEGTDGLGV 393

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194905813|ref|XP_001981262.1| GG11976 [Drosophila erecta] gi|190655900|gb|EDV53132.1| GG11976 [Drosophila erecta]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 101/135 (74%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+L+ + +  +LG+H+E+   GV++L   G + NSKK + +G+I  + L+GDK LYD
Sbjct: 259 IPDAVLAALHNHKDLGIHSEMFANGVVELVRKGCVTNSKKKMHQGRIVGSFLIGDKALYD 318

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           FV NN  ++M    Y N+ +I++Q  RMTAIN+C+E+D+TGQV SDS+G+R YSGFGGQV
Sbjct: 319 FVDNNPFIEMYAIDYVNNTSIVKQQPRMTAINSCIEVDLTGQVCSDSIGSRFYSGFGGQV 378

Query: 122 DFMRGALTGLDGKGL 136
           DF+RGA  GLDG G+
Sbjct: 379 DFIRGAAEGLDGLGV 393

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195505025|ref|XP_002099331.1| GE23426 [Drosophila yakuba] gi|194185432|gb|EDW99043.1| GE23426 [Drosophila yakuba]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 101/135 (74%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+L+ + +  +LG+H+E+   GV++L   G + NSKK + +G+I  + L+GDK LYD
Sbjct: 259 IPDAVLAALHNHKDLGIHSEMFANGVVELVRKGCVTNSKKKMHQGRIVGSFLIGDKALYD 318

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           FV NN  ++M    Y N+ +I++Q  RMTAIN+C+E+D+TGQV SDS+G+R YSGFGGQV
Sbjct: 319 FVDNNPFIEMYAIDYVNNTSIVKQQPRMTAINSCIEVDLTGQVCSDSIGSRFYSGFGGQV 378

Query: 122 DFMRGALTGLDGKGL 136
           DF+RGA  GLDG G+
Sbjct: 379 DFIRGAAEGLDGLGV 393

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195451691|ref|XP_002073035.1| GK13373 [Drosophila willistoni] gi|194169120|gb|EDW84021.1| GK13373 [Drosophila willistoni]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 68/135 (50%), Positives = 103/135 (76%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+L+ + +  +LG+H+E+   GV++L   G + NSKK + +G+I  + L+GD+PLYD
Sbjct: 258 IPDAVLAALHNHKDLGIHSEMFANGVVELVKKGCVTNSKKKMHQGRIVGSFLIGDQPLYD 317

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           FV++N  ++M    Y N+ +I++Q  RMTAIN+C+E+D+TGQV SDS+GTR +SGFGGQV
Sbjct: 318 FVNDNPFIEMYAIDYVNNTSIVKQQPRMTAINSCIEVDLTGQVCSDSIGTRFFSGFGGQV 377

Query: 122 DFMRGALTGLDGKGL 136
           DF+RGA  G+DG G+
Sbjct: 378 DFIRGAAEGIDGLGV 392

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195053956|ref|XP_001993892.1| GH22150 [Drosophila grimshawi] gi|193895762|gb|EDV94628.1| GH22150 [Drosophila grimshawi]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 69/135 (51%), Positives = 103/135 (76%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+L+ + +  +LG+H+E+   GV++L   G I NS+K++ +G+I  + L+GD+PLYD
Sbjct: 255 IPDAVLNALHNHKDLGIHSEMFANGVVELARKGCITNSRKTMHKGRIVGSFLIGDQPLYD 314

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           FV++N  ++M    Y N+ +I++Q  RMTAIN+C+E+D+TGQV SDS+ TR YSGFGGQV
Sbjct: 315 FVNDNPFIEMLAIDYVNNTSIVKQQPRMTAINSCIEVDLTGQVCSDSIATRFYSGFGGQV 374

Query: 122 DFMRGALTGLDGKGL 136
           DF+RGA  GLDG G+
Sbjct: 375 DFIRGAAEGLDGLGV 389

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195574957|ref|XP_002105449.1| GD17454 [Drosophila simulans] gi|194201376|gb|EDX14952.1| GD17454 [Drosophila simulans]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 100/135 (74%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+L+ + +  +LG+H+E+   GV++L   G + NSKK + +G+I  + L+GDK LYD
Sbjct: 259 IPDAVLAALHNHKDLGIHSEMFANGVVELVRKGCVTNSKKKMHQGRIVGSFLIGDKALYD 318

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           FV NN  ++M    Y N+ +I++Q  RMTAIN+C+E+D+TGQV SDS+G R YSGFGGQV
Sbjct: 319 FVDNNPFIEMYAIDYVNNTSIVKQQPRMTAINSCIEVDLTGQVCSDSIGPRFYSGFGGQV 378

Query: 122 DFMRGALTGLDGKGL 136
           DF+RGA  GLDG G+
Sbjct: 379 DFIRGAAEGLDGLGV 393

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21358615|ref|NP_651762.1| CG7920, isoform A [Drosophila melanogaster] gi|442621803|ref|NP_001263095.1| CG7920, isoform C [Drosophila melanogaster] gi|7301882|gb|AAF56990.1| CG7920, isoform A [Drosophila melanogaster] gi|17861912|gb|AAL39433.1| GM14349p [Drosophila melanogaster] gi|220956342|gb|ACL90714.1| CG7920-PA [synthetic construct] gi|440218050|gb|AGB96474.1| CG7920, isoform C [Drosophila melanogaster]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/135 (51%), Positives = 100/135 (74%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+L+ + +  +LG+H+E+   GV++L   G + NSKK + +G+I  + L+GDK LYD
Sbjct: 259 IPDAVLAALHNHKDLGIHSEMFANGVVELVRKGCVTNSKKKMHQGRIVGSFLIGDKALYD 318

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           FV NN  ++M    Y N+ +I++Q  RMTAIN+C+E+D+TGQV SDS+G R YSGFGGQV
Sbjct: 319 FVDNNPFIEMYAIDYVNNTSIVKQQPRMTAINSCIEVDLTGQVCSDSIGPRFYSGFGGQV 378

Query: 122 DFMRGALTGLDGKGL 136
           DF+RGA  GLDG G+
Sbjct: 379 DFIRGAAEGLDGLGV 393

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546092|ref|XP_001601334.1| PREDICTED: 4-hydroxybutyrate coenzyme A transferase-like [Nasonia vitripennis]

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 99/134 (73%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+AIL  + +  +LG+HTE+ + G++ L   G + N +K+  +G++ +T+ +G K LYD
Sbjct: 251 IPDAILCALGNHKDLGIHTEVFSDGMVDLVEKGCVTNKRKTKHKGRLVSTMAIGTKKLYD 310

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           FVHNN  + M    Y NDP +I + H+MTAIN+C+E+DITGQ+ SDSLGT++YSG GGQ+
Sbjct: 311 FVHNNPFISMLGLNYVNDPRVISKQHKMTAINSCIEMDITGQICSDSLGTKMYSGHGGQL 370

Query: 122 DFMRGALTGLDGKG 135
           DFMRGA  GLDG+G
Sbjct: 371 DFMRGAALGLDGRG 384

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
FB|FBgn0039737	477	CG7920 [Drosophila melanogaste	0.794	0.283	0.518	2.1e-36
WB|WBGene00016630	471	C44B7.10 [Caenorhabditis elega	0.788	0.284	0.470	1.3e-31
TIGR_CMR|CHY_1324	434	CHY_1324 "4-hydroxybutyrate co	0.794	0.311	0.474	1.4e-30
UNIPROTKB|Q484X1	622	CPS_1656 "4-hydroxybutyrate co	0.8	0.218	0.448	1.1e-28
TIGR_CMR|CPS_1656	622	CPS_1656 "4-hydroxybutyrate co	0.8	0.218	0.448	1.1e-28
TIGR_CMR|SO_1708	428	SO_1708 "4-hydroxybutyrate coe	0.776	0.308	0.477	6.4e-28
TIGR_CMR|CHY_1351	432	CHY_1351 "4-hydroxybutyrate co	0.794	0.312	0.429	8.2e-28
WB|WBGene00014258	472	ZK1320.9 [Caenorhabditis elega	0.788	0.283	0.440	6.1e-27
CGD|CAL0002388	524	ACH1 [Candida albicans (taxid:	0.635	0.206	0.352	1.3e-07
UNIPROTKB|P83773	524	ACH1 "Acetyl-CoA hydrolase" [C	0.635	0.206	0.352	1.3e-07

FB|FBgn0039737 CG7920 [Drosophila melanogaster (taxid:7227)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 70/135 (51%), Positives = 100/135 (74%)

Query:     2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
             IP+A+L+ + +  +LG+H+E+   GV++L   G + NSKK + +G+I  + L+GDK LYD
Sbjct:   259 IPDAVLAALHNHKDLGIHSEMFANGVVELVRKGCVTNSKKKMHQGRIVGSFLIGDKALYD 318

Query:    62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
             FV NN  ++M    Y N+ +I++Q  RMTAIN+C+E+D+TGQV SDS+G R YSGFGGQV
Sbjct:   319 FVDNNPFIEMYAIDYVNNTSIVKQQPRMTAINSCIEVDLTGQVCSDSIGPRFYSGFGGQV 378

Query:   122 DFMRGALTGLDGKGL 136
             DF+RGA  GLDG G+
Sbjct:   379 DFIRGAAEGLDGLGV 393

GO:0008411 "4-hydroxybutyrate CoA-transferase activity" evidence=ISS

GO:0006084 "acetyl-CoA metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

WB|WBGene00016630 C44B7.10 [Caenorhabditis elegans (taxid:6239)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 63/134 (47%), Positives = 95/134 (70%)

Query:     2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
             +P+A LS + +  +LG+HTE+ + GV+ L     I N+KK+I  G++  + + G   LYD
Sbjct:   253 VPDAALSALSNHKDLGIHTEMFSDGVLDLIEKNAITNAKKAIHPGKLVVSFVYGSTKLYD 312

Query:    62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
             ++++N L++     + NDPA++R+N ++TAIN+ +EID+TGQVVSDS+G R  SGFGGQV
Sbjct:   313 YLNDNPLIEFGDVNWVNDPAVVRKNPKVTAINSAVEIDLTGQVVSDSVGKRFLSGFGGQV 372

Query:   122 DFMRGALTGLDGKG 135
             DF+RGA  G DG G
Sbjct:   373 DFIRGAAIGNDGLG 386

GO:0003824 "catalytic activity" evidence=IEA

GO:0006084 "acetyl-CoA metabolic process" evidence=IEA

TIGR_CMR|CHY_1324 CHY_1324 "4-hydroxybutyrate coenzyme A transferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 64/135 (47%), Positives = 91/135 (67%)

Query:     2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
             IP A+   +K + NLG+HTE++T  ++ L  +GVI  S KS+   +I  T  LG K LY 
Sbjct:   222 IPNAVAKFLKEKKNLGIHTEMITDSMVDLVEAGVITGSAKSLHPYKIVGTFALGTKKLYS 281

Query:    62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
             F++NN +V+M   +Y+N+P +I QN +M +INT LEID+ GQ  S+S+GT+IYSG GGQ 
Sbjct:   282 FLNNNPMVEMHPVSYTNNPCVIAQNKKMISINTTLEIDLWGQCASESIGTKIYSGTGGQA 341

Query:   122 DFMRGALTGLDGKGL 136
             DF +G L    GKG+
Sbjct:   342 DFAQGVLHSPGGKGI 356

GO:0008411 "4-hydroxybutyrate CoA-transferase activity" evidence=ISS

GO:0009061 "anaerobic respiration" evidence=ISS

UNIPROTKB|Q484X1 CPS_1656 "4-hydroxybutyrate coenzyme A transferase, putative/acetyltransferase, GNAT family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 326 (119.8 bits), Expect = 1.1e-28, P = 1.1e-28
 Identities = 61/136 (44%), Positives = 90/136 (66%)

Query:     1 KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLY 60
             KIPEA+L+ + +  +LG+H+E+++ GVI L   GVINN +K+  +G+   T  +G + LY
Sbjct:   215 KIPEAVLTYLGNHKDLGIHSEMISDGVIDLMLKGVINNRRKTYHKGKAVVTFCIGSQKLY 274

Query:    61 DFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQ 120
             DFV  N  ++     + N P  I +N  M +IN+ +E+D+TGQVVSDS+G + YSG GGQ
Sbjct:   275 DFVDGNPHIEFYPSEHVNSPVKIAKNDNMVSINSAIEVDLTGQVVSDSIGYQFYSGIGGQ 334

Query:   121 VDFMRGALTGLDGKGL 136
             VDF+RGA     GK +
Sbjct:   335 VDFVRGASLSKGGKAI 350

GO:0008411 "4-hydroxybutyrate CoA-transferase activity" evidence=ISS

TIGR_CMR|CPS_1656 CPS_1656 "4-hydroxybutyrate coenzyme A transferase, putative/acetyltransferase, GNAT family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 326 (119.8 bits), Expect = 1.1e-28, P = 1.1e-28
 Identities = 61/136 (44%), Positives = 90/136 (66%)

Query:     1 KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLY 60
             KIPEA+L+ + +  +LG+H+E+++ GVI L   GVINN +K+  +G+   T  +G + LY
Sbjct:   215 KIPEAVLTYLGNHKDLGIHSEMISDGVIDLMLKGVINNRRKTYHKGKAVVTFCIGSQKLY 274

Query:    61 DFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQ 120
             DFV  N  ++     + N P  I +N  M +IN+ +E+D+TGQVVSDS+G + YSG GGQ
Sbjct:   275 DFVDGNPHIEFYPSEHVNSPVKIAKNDNMVSINSAIEVDLTGQVVSDSIGYQFYSGIGGQ 334

Query:   121 VDFMRGALTGLDGKGL 136
             VDF+RGA     GK +
Sbjct:   335 VDFVRGASLSKGGKAI 350

GO:0008080 "N-acetyltransferase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0008411 "4-hydroxybutyrate CoA-transferase activity" evidence=ISS

TIGR_CMR|SO_1708 SO_1708 "4-hydroxybutyrate coenzyme A transferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 64/134 (47%), Positives = 90/134 (67%)

Query:     2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
             IP+A+LS +    +LGVHTEL + G+++L   GVINN+KK    G++     LG + LYD
Sbjct:   214 IPDAVLSCLTGHKDLGVHTELFSDGILQLVEKGVINNTKKRFYPGKLVTGFALGSQKLYD 273

Query:    62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
             +V +N  V        ND +IIR+N  + AIN+ L++D+TGQV +DS+GT+IYSG GGQ+
Sbjct:   274 YVDDNPAVIFMDIEQVNDTSIIRKNPNVMAINSALQVDLTGQVCADSIGTKIYSGVGGQM 333

Query:   122 DFMRGALTGLDGKG 135
             DF+RGA  GL   G
Sbjct:   334 DFIRGA--GLSEGG 345

GO:0008411 "4-hydroxybutyrate CoA-transferase activity" evidence=ISS

GO:0009061 "anaerobic respiration" evidence=ISS

TIGR_CMR|CHY_1351 CHY_1351 "4-hydroxybutyrate coenzyme A transferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 58/135 (42%), Positives = 89/135 (65%)

Query:     2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
             IP A+   + ++ +LG+HTE++T  ++ L  +GV+    K++   +I  T   G K LY 
Sbjct:   220 IPNAVAKLLLNKRDLGIHTEMITDSMVDLVEAGVVTGRAKTLHPYKIIGTFAFGSKKLYK 279

Query:    62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
             F++NN +V+M   +Y+N+P +I QN +M +INT +EID+ GQ  S+S+GT+IYSG GGQ 
Sbjct:   280 FLNNNPMVEMHPVSYTNNPWVIGQNKKMVSINTTIEIDLWGQCASESIGTKIYSGSGGQA 339

Query:   122 DFMRGALTGLDGKGL 136
             DF RG L    GKG+
Sbjct:   340 DFARGVLYSPGGKGI 354

GO:0008411 "4-hydroxybutyrate CoA-transferase activity" evidence=ISS

GO:0009061 "anaerobic respiration" evidence=ISS

WB|WBGene00014258 ZK1320.9 [Caenorhabditis elegans (taxid:6239)]

 Score = 305 (112.4 bits), Expect = 6.1e-27, P = 6.1e-27
 Identities = 59/134 (44%), Positives = 86/134 (64%)

Query:     2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
             IP++ L+ +K   +LGVHTE+ + GVI L + G+INN KK+   G+  ++   G K  Y 
Sbjct:   255 IPDSALAAMKQHKDLGVHTEMFSDGVIDLIDRGIINNQKKAFMPGKTVSSFAFGTKEFYK 314

Query:    62 FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
              + NN         ++N   I+R+N +MT+IN+ +EID+TGQ+VSDS+G   +SGFGGQV
Sbjct:   315 KIDNNPEFYFAPCDFTNHIDIVRRNSKMTSINSAIEIDLTGQIVSDSIGRNFFSGFGGQV 374

Query:   122 DFMRGALTGLDGKG 135
             DFM  +  G DG G
Sbjct:   375 DFMAASPHGFDGLG 388

GO:0003824 "catalytic activity" evidence=IEA

GO:0006084 "acetyl-CoA metabolic process" evidence=IEA

CGD|CAL0002388 ACH1 [Candida albicans (taxid:5476)]

 Score = 130 (50.8 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 44/125 (35%), Positives = 64/125 (51%)

Query:     8 SNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGD--KPLYDF--V 63
             SN K   NL V TE+L    +  F SG       S+D    T+  L  D  K  YD    
Sbjct:   290 SNFK---NLTVWTEVLQDSFLDFFESG-------SLDYATATSIRLTNDGFKKFYDNWDT 339

Query:    64 HNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFGGQVD 122
             ++ +L  ++    SN P IIR+   + A+NT +E+DI G   S + +G+R+ +G GG  D
Sbjct:   340 YSKKLC-LRSQVVSNSPEIIRRLG-VIAMNTPVEVDIYGHANSTNVMGSRMLNGLGGSAD 397

Query:   123 FMRGA 127
             F+R A
Sbjct:   398 FLRNA 402

GO:0003986 "acetyl-CoA hydrolase activity" evidence=IGI;ISA

GO:0006083 "acetate metabolic process" evidence=IGI;ISA

GO:0005829 "cytosol" evidence=IGI;ISA

GO:0005739 "mitochondrion" evidence=IGI;ISA

GO:0071469 "cellular response to alkalinity" evidence=IMP

GO:0008775 "acetate CoA-transferase activity" evidence=IEA

UNIPROTKB|P83773 ACH1 "Acetyl-CoA hydrolase" [Candida albicans SC5314 (taxid:237561)]

 Score = 130 (50.8 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 44/125 (35%), Positives = 64/125 (51%)

Query:     8 SNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGD--KPLYDF--V 63
             SN K   NL V TE+L    +  F SG       S+D    T+  L  D  K  YD    
Sbjct:   290 SNFK---NLTVWTEVLQDSFLDFFESG-------SLDYATATSIRLTNDGFKKFYDNWDT 339

Query:    64 HNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFGGQVD 122
             ++ +L  ++    SN P IIR+   + A+NT +E+DI G   S + +G+R+ +G GG  D
Sbjct:   340 YSKKLC-LRSQVVSNSPEIIRRLG-VIAMNTPVEVDIYGHANSTNVMGSRMLNGLGGSAD 397

Query:   123 FMRGA 127
             F+R A
Sbjct:   398 FLRNA 402

GO:0003986 "acetyl-CoA hydrolase activity" evidence=ISA

GO:0005739 "mitochondrion" evidence=ISA

GO:0005829 "cytosol" evidence=ISA

GO:0006083 "acetate metabolic process" evidence=ISA

GO:0071469 "cellular response to alkalinity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	170
pfam13336	152	pfam13336, AcetylCoA_hyd_C, Acetyl-CoA hydrolase/t	7e-41
COG0427	501	COG0427, ACH1, Acetyl-CoA hydrolase [Energy produc	5e-30
TIGR03948	445	TIGR03948, butyr_acet_CoA, butyryl-CoA:acetate CoA	4e-23
TIGR03458	485	TIGR03458, YgfH_subfam, succinate CoA transferase	5e-06

>gnl|CDD|205516 pfam13336, AcetylCoA_hyd_C, Acetyl-CoA hydrolase/transferase C-terminal domain

 Score =  134 bits (339), Expect = 7e-41
 Identities = 41/81 (50%), Positives = 56/81 (69%)

Query: 55  GDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIY 114
           G + LYDF+ +N  ++M+   Y NDP +I QN  M +IN+ LE+D+TGQV S+S+G R Y
Sbjct: 1   GSQRLYDFLDDNPKIEMRPVDYVNDPEVIAQNDNMVSINSALEVDLTGQVNSESIGGRQY 60

Query: 115 SGFGGQVDFMRGALTGLDGKG 135
           SG GGQ+DF+RGA     GK 
Sbjct: 61  SGVGGQLDFVRGAYLSKGGKS 81

This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase EC:3.1.2.1 catalyzes the formation of acetate from acetyl-CoA, CoA transferase (CAT1) EC:2.8.3.- produces succinyl-CoA, and acetate-CoA transferase EC:2.8.3.8 utilises acyl-CoA and acetate to form acetyl-CoA. Length = 152

>gnl|CDD|223504 COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion]

 Score =  113 bits (285), Expect = 5e-30
 Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 8/129 (6%)

Query: 2   IPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPL 59
           IP A++  +K     +LGVHTE+L  G++ L   G + N+ K+        +  +G + L
Sbjct: 269 IPNAVMGGLKESPFKDLGVHTEVLQDGLVDLIEEGKVTNASKT----SFVLSFAMGSRKL 324

Query: 60  YDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFG 118
           YD+++ N  + ++   YSN+P IIR+   + AIN+ LE+D+ G V S  + G+R  +G G
Sbjct: 325 YDYLNYNPRIVLRPQDYSNNPEIIRRLG-VIAINSALEVDLYGAVNSTHVGGSRQMNGIG 383

Query: 119 GQVDFMRGA 127
           G  DF+R A
Sbjct: 384 GSGDFVRNA 392

Length = 501

>gnl|CDD|188463 TIGR03948, butyr_acet_CoA, butyryl-CoA:acetate CoA-transferase

 Score = 94.1 bits (234), Expect = 4e-23
 Identities = 45/120 (37%), Positives = 66/120 (55%)

Query: 15  NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRG 74
           +LGVHTE+     + +  +G IN SKK+IDRG+       G K +YD++ +N        
Sbjct: 238 DLGVHTEMYVDAFVDIAKAGKINGSKKNIDRGRQVYAFGAGTKKMYDYLDDNPECMSAPV 297

Query: 75  TYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGK 134
            Y+ND   I       +IN  ++ID+ GQV ++S G +  SG GGQ+DF+ GA     GK
Sbjct: 298 DYTNDIRSISALDNFISINNAVDIDLFGQVNAESAGIKQISGAGGQLDFVLGAYLSKGGK 357

This enzyme represents one of at least two mechanisms for reclaiming CoA from butyryl-CoA at the end of butyrate biosynthesis (an important process performed by some colonic bacteria), namely transfer of CoA to acetate. An alternate mechanism transfers the butyrate onto inorganic phosphate, after which butyrate kinase transfers the phosphate onto ADP, creating ATP [Energy metabolism, Fermentation]. Length = 445

>gnl|CDD|234217 TIGR03458, YgfH_subfam, succinate CoA transferase

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 6/55 (10%)

Query: 76  YSNDPAIIRQNHRM--TAINTCLEIDITGQVVSDS-LGTRIYSGFGGQVDFMRGA 127
            SN P IIR   R+   AINT +E DI G V S   +GT++ +G GG  DF R A
Sbjct: 331 ISNHPEIIR---RLGVIAINTAIEADIYGNVNSTHVMGTKMMNGIGGSGDFARNA 382

This family of CoA transferases includes enzymes catalyzing at least two related but distinct activities. The E. coli YgfH protein has been characterized as a propionyl-CoA:succinate CoA transferase where it appears to be involved in a pathway for the decarboxylation of succinate to propionate. The Clostridium kluyveri CAT1 protein has been characterized as a acetyl-CoA:succinate CoA transferase and is believed to be involved in anaerobic succinate degradation. The propionate:succinate transferase activity has been reported in the propionic acid fermentation of propionibacterium species where it is distinct from the coupled activities of distinct nucleotide-triphosphate dependent succinate and propionate/acetate CoA transferases (as inferred from activity in the absence of NTPs). The family represented by this model includes a member from Propionibacterium acnes KPA171202 which is likely to be responsible for this activity. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins modeled by This model, possibly erroneously. Length = 485

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
TIGR03458	485	YgfH_subfam succinate CoA transferases. A closely	100.0
KOG2828|consensus	454		100.0
COG0427	501	ACH1 Acetyl-CoA hydrolase [Energy production and c	100.0
PF13336	154	AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase	100.0
TIGR01110	543	mdcA malonate decarboxylase, alpha subunit. This m	100.0
TIGR01584	492	citF citrate lyase, alpha subunit. This is a model	100.0
TIGR02428	207	pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit	99.92
PF04223	466	CitF: Citrate lyase, alpha subunit (CitF); InterPr	98.53
COG2057	225	AtoA Acyl CoA:acetate/3-ketoacid CoA transferase,	97.73
COG3051	513	CitF Citrate lyase, alpha subunit [Energy producti	97.39

>TIGR03458 YgfH_subfam succinate CoA transferases

Probab=100.00  E-value=1.6e-55  Score=402.67  Aligned_cols=154  Identities=27%  Similarity=0.413  Sum_probs=142.1

Q ss_pred             CchHHHHHhcccC--CCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhccc----CCceeeecc
Q psy2324           1 KIPEAILSNIKHQ--INLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHN----NELVQMKRG   74 (170)
Q Consensus         1 ~ipnAV~~~L~~~--kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~----np~v~~~p~   74 (170)
                      +|||||+.+|+++  ||||||||||+|++++|+|+|+|||+        ++++|++|++.||+|+|+    ||.|+|+|+
T Consensus       258 ~ipnAv~~~L~~~~~kdLgihtem~~d~~~~L~~~G~i~~~--------~v~~~~~g~~~~~~~~~~~d~~n~~~~~~p~  329 (485)
T TIGR03458       258 NIANAVLAGLGDSPFENLTMYTEVIQDSMLDLIDSGKLTFA--------SATSLTLSPEALERFYANIDFYRDKIVLRPQ  329 (485)
T ss_pred             hHHHHHHHHHhcCCCCCceEEeeechHhHHHHHHCCCcccc--------eEEEEEecHHHHHHHHhhhhhcCCcEEEecc
Confidence            5899999999988  99999999999999999999999987        599999999888888887    999999999


Q ss_pred             ceeccHHHHHhcCCceEeccceEeeecccccccC-CCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC------
Q psy2324          75 TYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS------  147 (170)
Q Consensus        75 ~~tN~P~~Iar~~~~vsINsaleVDL~GQvnse~-iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~------  147 (170)
                      +|||||++|+|+ +|+|||||||||||||||||+ +|+|++||+|||+||+|||++|       |||||||+++      
T Consensus       330 ~~tn~p~vi~~~-~~vsiNsaievDL~Gqv~se~~~g~~~~sG~GGq~DF~rgA~~S-------iial~st~~~g~~S~I  401 (485)
T TIGR03458       330 EISNHPEIIRRL-GVIAINTAIEADIYGNVNSTHVMGTKMMNGIGGSGDFARNAYLS-------IFMTPSIAKGGKISSI  401 (485)
T ss_pred             ceeCCHHHHhhC-CeEEEehheEeccCceeeeecccCceEEecCccHHHHHHHHhhh-------hEEeeeecCCCceeeE
Confidence            999999999999 999999999999999999998 7999999999999999999988       8999999986      


Q ss_pred             CCCCC---CCCCCCceEEeeeeeccC
Q psy2324         148 MPLLG---SNPGPPDYQASAWKIGLI  170 (170)
Q Consensus       148 ~~~l~---s~~~~~~~~~te~gia~~  170 (170)
                      .|.|.   +.-..+||||||||||++
T Consensus       402 vp~l~~vt~~r~dv~~vVTE~G~A~L  427 (485)
T TIGR03458       402 VPMVSHVDHTEHDVMVIVTEQGLADL  427 (485)
T ss_pred             eecCCCcCCchhhCCEEEecCEEEEe
Confidence            45553   222489999999999974

A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.

>KOG2828|consensus

Probab=100.00  E-value=3.1e-52  Score=370.24  Aligned_cols=168  Identities=41%  Similarity=0.730  Sum_probs=162.1

Q ss_pred             CchHHHHHhcccCCCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccceeccH
Q psy2324           1 KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDP   80 (170)
Q Consensus         1 ~ipnAV~~~L~~~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~~tN~P   80 (170)
                      +||||++++|.+|||||||||||+|++++|++.|+++|++|++++|  +.+|..|++.||+|+++||+|+|+|++++|+|
T Consensus       237 ~Ipdavl~A~~~hKdLgvhtem~~d~vl~l~~~~~~~~s~~~~~~g--~~s~~~~~k~f~~~~nnn~~i~~~~~~~~n~~  314 (454)
T KOG2828|consen  237 NIPDAVLAALSNHKDLGVHTEMFQDGVLDLFEKGCLTNSKKTSHRG--VSSFKGGDKAFYNYLNNNPRIELRPQVFSNNP  314 (454)
T ss_pred             cchHHHHHhccccccceehHHHhhcchHHHHHhccchhhhhhhccC--ccccchhhHHHHhhhcCCceeeeccccccCCH
Confidence            5899999999999999999999999999999999999999999999  88899999999999999999999999999999


Q ss_pred             HHHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccC-----CCCCCCCCC
Q psy2324          81 AIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDN-----SMPLLGSNP  155 (170)
Q Consensus        81 ~~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~-----~~~~l~s~~  155 (170)
                      ++++|+++|+||||++|+|||||+||+++|.|++||.|||+||+|||.++.+|.|++||+|||+++     ..|+|.-+.
T Consensus       315 ~ivrr~~~~~ains~ve~dl~~~~~s~~vg~r~lsG~GGqvDFlr~a~~g~dglgkpiialps~t~kGqskIVP~l~~gs  394 (454)
T KOG2828|consen  315 EIVRRNPKVTAINSPVEVDLTGQANSDSVGSRFLSGFGGQVDFLRNAKLGFDGLGKPIIALPSRTPKGQSKIVPTLKMGS  394 (454)
T ss_pred             HHHhhcccceeeccceeeeccccccccchhhHHhhccCcchhhhhcCcccccccCCceeecCccCCCCceeecccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999886     389998888


Q ss_pred             C------CCceEEeeeeeccC
Q psy2324         156 G------PPDYQASAWKIGLI  170 (170)
Q Consensus       156 ~------~~~~~~te~gia~~  170 (170)
                      |      ..||+|||+|||+.
T Consensus       395 gVvttrah~~y~VTEhGiA~L  415 (454)
T KOG2828|consen  395 GVVTTRAHLDYLVTEHGIADL  415 (454)
T ss_pred             ceeeeccceeEEEecccHHHH
Confidence            7      67899999999973

>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]

Probab=100.00  E-value=2.5e-51  Score=373.29  Aligned_cols=158  Identities=32%  Similarity=0.584  Sum_probs=147.7

Q ss_pred             CchHHHHHhccc--CCCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccceec
Q psy2324           1 KIPEAILSNIKH--QINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSN   78 (170)
Q Consensus         1 ~ipnAV~~~L~~--~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~~tN   78 (170)
                      +|||||+.+|++  ++||++||||+||++++|+++|++++++|+    +.+.+|++|++.||+|.++||+|.+||++|+|
T Consensus       268 ~i~naV~~gL~~~~~~~l~~~tEVlqDg~~~L~~~G~~~~as~t----s~~ls~~~~~r~~~~~~~~~~~i~lrP~~~sN  343 (501)
T COG0427         268 NIPNAVMGGLKESPFKDLGVHTEVLQDGLVDLIEEGKVTNASKT----SFVLSFAMGSRKLYDYLNYNPRIVLRPQDYSN  343 (501)
T ss_pred             chHHHHHHHHhcCCcccceEEEEecChhHHHHHHcCCccccccc----eEEEcHhHhhhHHHHHhhcCcceeeccccccC
Confidence            589999999998  899999999999999999999999999998    78999999999999999999999999999999


Q ss_pred             cHHHHHhcCCceEeccceEeeecccccccCC-CCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC------CCCC
Q psy2324          79 DPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS------MPLL  151 (170)
Q Consensus        79 ~P~~Iar~~~~vsINsaleVDL~GQvnse~i-G~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~------~~~l  151 (170)
                      +|++|+|++ |+|||+++|+|||||||||++ |+||+||+|||+||+|||++|       |+++|||+++      .|.+
T Consensus       344 ~PeiIrrlg-~iaiNsa~evDl~G~~NSt~v~g~r~~nGiGGs~DF~RnA~~S-------I~~~pSta~~G~IS~IVP~~  415 (501)
T COG0427         344 NPEIIRRLG-VIAINSALEVDLYGAVNSTHVGGSRQMNGIGGSGDFVRNAYLS-------IFATPSTAKGGTISRIVPML  415 (501)
T ss_pred             CHHHHHhcC-eeEeccceEEEeecccccccccCceeeecCCchHhhhhcceee-------eEecccccCCCceeEEEecC
Confidence            999999996 999999999999999999998 778999999999999999999       9999999553      4444


Q ss_pred             C---CCCCCCceEEeeeeeccC
Q psy2324         152 G---SNPGPPDYQASAWKIGLI  170 (170)
Q Consensus       152 ~---s~~~~~~~~~te~gia~~  170 (170)
                      +   +.-+++|||||||||||.
T Consensus       416 ~hVd~~rhdvdvvVTE~GiAdL  437 (501)
T COG0427         416 SHVDHTRHDVDVVVTEYGIADL  437 (501)
T ss_pred             CCccccccceeEEEEeechhhh
Confidence            4   444699999999999984

>PF13336 AcetylCoA_hyd_C: Acetyl-CoA hydrolase/transferase C-terminal domain; PDB: 3EH7_A 3D3U_A 2OAS_A 3GK7_B 3QDQ_A 2G39_A 2NVV_C 3S8D_B 3QLI_B 3QLK_B

Probab=100.00  E-value=1.1e-50  Score=323.82  Aligned_cols=114  Identities=35%  Similarity=0.633  Sum_probs=97.2

Q ss_pred             CchHHHHhcccCCceeeeccceeccHHHHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCC
Q psy2324          55 GDKPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGK  134 (170)
Q Consensus        55 Gs~~LY~~~d~np~v~~~p~~~tN~P~~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~  134 (170)
                      |+++||||+|+||.|+|+|++|||||.+|+|+++|+|||+||||||+||||||++|+|++||+|||.||+|||++|+|  
T Consensus         1 Gs~~lY~~~d~np~i~~~p~~~~n~p~~ia~~~~~vsINsaievDL~Gqv~se~ig~~~~sG~GGq~DF~~gA~~s~g--   78 (154)
T PF13336_consen    1 GSQRLYDWLDDNPSIEFRPVDYVNDPEVIARNDNMVSINSAIEVDLTGQVNSESIGGRQVSGIGGQLDFVRGAYLSKG--   78 (154)
T ss_dssp             S-HHHHHHHTTCTTEEE-BHHHHT-HHHHTTSTTEEEEEE-SEEETTS-EESSEETTEESSGGTTHHHHHHHHHHSTT--
T ss_pred             CcHHHHHHHhcCCCeEEeCcceeCCHHHHhCcCCcEEEecceEEecCcceeecccCCceEecCccHHHHHHHHHhCCC--
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CcEEEEeeeccCC------CCCCCCCC------CCCceEEeeeeeccC
Q psy2324         135 GLKYQILVHEDNS------MPLLGSNP------GPPDYQASAWKIGLI  170 (170)
Q Consensus       135 G~sIial~St~~~------~~~l~s~~------~~~~~~~te~gia~~  170 (170)
                      ||||||||||+++      .|.|+.+.      +.+||||||||||++
T Consensus        79 G~sIial~St~~~G~~S~Iv~~l~~g~~vt~~r~dvd~VVTEyGvA~L  126 (154)
T PF13336_consen   79 GKSIIALPSTAKDGTISRIVPRLPPGAPVTTPRHDVDYVVTEYGVADL  126 (154)
T ss_dssp             -EEEEE--SEETTTTEESEESS-STTSSESB-TTT-SEEEETTEEEE-
T ss_pred             CceEEEEecccCCCCccceeeeecCCCCcccCcccCCEEEcCCEEEEe
Confidence            9999999999974      45666443      389999999999974

...

>TIGR01110 mdcA malonate decarboxylase, alpha subunit

Probab=100.00  E-value=7.6e-44  Score=326.74  Aligned_cols=149  Identities=16%  Similarity=0.107  Sum_probs=140.2

Q ss_pred             CchHHHHHhcccC-CCceEEecccch-------HHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeee
Q psy2324           1 KIPEAILSNIKHQ-INLGVHTELLTP-------GVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMK   72 (170)
Q Consensus         1 ~ipnAV~~~L~~~-kdLgvhTEm~~D-------~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~   72 (170)
                      .+||||...|.++ ||||+||||++|       ++++|+|+|+|+|.        ++++|++   +||||+|+||.|+|+
T Consensus       251 ~~p~AI~~~L~~~~kdLGlhtem~~~~~~np~p~li~lieaG~V~~~--------~v~gf~~---~mydyi~~nP~v~f~  319 (543)
T TIGR01110       251 FNTAAIELLLPTYGESLGLKGKICKNWALNPHPTLIPAIESGWVESV--------HSFGGEL---GMEDYIEARPDVFFT  319 (543)
T ss_pred             cCHHHHHHHhcccCcCCccCceeecCcccccCccHHHHHHcCCccce--------EeehhHh---HHHHHHhcCCCEEEe
Confidence            4799999999999 999999999999       99999999999987        5899999   999999999999999


Q ss_pred             ccceeccHHHHHhcCCc----------eEeccceEeeecccccccCCCCeeeeccCchHHHH-----------------H
Q psy2324          73 RGTYSNDPAIIRQNHRM----------TAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFM-----------------R  125 (170)
Q Consensus        73 p~~~tN~P~~Iar~~~~----------vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~-----------------r  125 (170)
                      |++     .+|++|++|          +|||+||||||+||+|+|++  +++||+|||+||+                 |
T Consensus       320 ~~d-----~~i~~N~~~~q~ag~y~~dv~InstlqiDl~Gq~sset~--~~~SG~GGq~df~~~~~grrh~~~~w~~~~r  392 (543)
T TIGR01110       320 GPD-----GSMRSNRAFSQTAGQYAVDMFIGSTLQIDGYGNSSTATR--GRLAGFGGAPNMGHDPHGRRHATPAWLKMGA  392 (543)
T ss_pred             cch-----hhhhhCcchhhhhcccccceeecceeEEecCCccchhhh--ceeccccCccccccCcccccccchhhhhhcc
Confidence            999     999999999          99999999999999999999  9999999999999                 9


Q ss_pred             HH---hhCCCCCCcEEEEeeeccCC------CCCCCC----------CCC------CCceEEeeeeecc
Q psy2324         126 GA---LTGLDGKGLKYQILVHEDNS------MPLLGS----------NPG------PPDYQASAWKIGL  169 (170)
Q Consensus       126 gA---~~S~gg~G~sIial~St~~~------~~~l~s----------~~~------~~~~~~te~gia~  169 (170)
                      ||   ++|+|  ||+||||+||.++      .|.|..          ++.      .++|||||||||.
T Consensus       393 gA~~~~~s~G--gK~iI~l~st~~~g~~s~iV~~L~~~~~~~~~~~~g~pVt~~r~Dv~~VVTE~GiA~  459 (543)
T TIGR01110       393 EFTDGDLPRG--RKLVVQMVETYQEGMKPTFVETLDAWELAKKAGMPLAPVMIYGDDVTHIVTEEGIAY  459 (543)
T ss_pred             cccccccCCC--CeEEEEeecccCCCCCceeecccchhhhhhhccCCCCceEeccCCcCEEeccHhHhH
Confidence            99   99999  9999999999885      466654          442      8999999999986

This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.

>TIGR01584 citF citrate lyase, alpha subunit

Probab=100.00  E-value=8.6e-42  Score=311.58  Aligned_cols=150  Identities=20%  Similarity=0.207  Sum_probs=136.7

Q ss_pred             CchHHHHHhcccC-CCceEEe----cccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccc
Q psy2324           1 KIPEAILSNIKHQ-INLGVHT----ELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGT   75 (170)
Q Consensus         1 ~ipnAV~~~L~~~-kdLgvhT----Em~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~   75 (170)
                      ++|+||+..|+++ |||||||    |||+|++++|+|+|++++..   +    |++|++|++   +|+++||.+.+.|.+
T Consensus       261 gip~AV~~~L~~~mkdlGIht~f~~g~iTd~~vdL~e~G~vt~~~---d----V~~F~lGs~---~~i~~Np~~~~~~a~  330 (492)
T TIGR01584       261 GAALAVTRFLKEKMIDHNIKASFGLGGITKQMVDLHEEGLIDKLF---D----VQSFDLGAA---ESIALNPNHQEIDAS  330 (492)
T ss_pred             HHHHHHHHHHHHHHHhCCCcccccCccccHHHHHHHHCCCcccce---e----EEEeecchH---HHHhcCCCeEEeccc
Confidence            4899999999999 9999999    99999999999999999873   2    999999999   688999999999999


Q ss_pred             eeccHHH---HHhcCCceEeccceEeeecccccccC-CCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC----
Q psy2324          76 YSNDPAI---IRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS----  147 (170)
Q Consensus        76 ~tN~P~~---Iar~~~~vsINsaleVDL~GQvnse~-iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~----  147 (170)
                      |+|||..   |+++++ +|||+|+||||+||||+|+ .+++++||+|||.||+|||++|       ||++||+...    
T Consensus       331 ~y~nP~~~~~i~~~~d-vsInsAlEVDl~gqVnv~t~s~G~~~sg~GGq~Dfa~GA~~S-------II~~ps~~Gris~I  402 (492)
T TIGR01584       331 WYANPANKGAMVNKLD-VVILSALEIDTKFNVNVMTGSDGVIRGASGGHQDTAAGAKLS-------IIVAPLVRGRIPTV  402 (492)
T ss_pred             cccCCCchHHHhhCCC-eEEEeeEEEecCCeeeEeecCCCeEEecCchHHHHHhhhcce-------EEEEEcCCCCcCeE
Confidence            9999988   999999 9999999999999999999 8999999999999999999995       9999998422    


Q ss_pred             CCCCC--CCCC-CCceEEeeeeec
Q psy2324         148 MPLLG--SNPG-PPDYQASAWKIG  168 (170)
Q Consensus       148 ~~~l~--s~~~-~~~~~~te~gia  168 (170)
                      .|.|.  +++| .+||||||||||
T Consensus       403 V~~v~~VtTpr~~Vd~VVTEyGIA  426 (492)
T TIGR01584       403 VEKVTTVITPGESIDVLVTEIGIA  426 (492)
T ss_pred             eCCCCCEECChhhCCEEEccCEEe
Confidence            44443  3333 999999999999

This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.

>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit

Probab=99.92  E-value=2.6e-25  Score=184.09  Aligned_cols=132  Identities=18%  Similarity=0.290  Sum_probs=115.9

Q ss_pred             CchHHHHHhcccCCCceEEecccchHHH-------------HHHHcCCccccccccCCCceEEEeecCchHHHHhcccCC
Q psy2324           1 KIPEAILSNIKHQINLGVHTELLTPGVI-------------KLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNE   67 (170)
Q Consensus         1 ~ipnAV~~~L~~~kdLgvhTEm~~D~~~-------------~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np   67 (170)
                      +||++++..|++++||++|||   +|++             +|+++|++   .|++++|+.+             ++.++
T Consensus        25 GiP~~va~~l~~~~~l~l~~E---~G~~g~~p~p~~~~~~~~l~~~g~~---~~~~~~g~~~-------------~~~~~   85 (207)
T TIGR02428        25 GIPTLVANYLPEGIEVFLQSE---NGILGMGPAPEPGEEDPDLINAGKQ---PVTLLPGASY-------------FDSAD   85 (207)
T ss_pred             cHHHHHHHHHhcCCeEEEEEe---CceecCccCCCCCCcCHHHHhCCCC---ceeeccCcEE-------------ecChh
Confidence            489999999999999999999   6887             79999999   7788888875             88888


Q ss_pred             ceeeeccceeccHHHHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC
Q psy2324          68 LVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS  147 (170)
Q Consensus        68 ~v~~~p~~~tN~P~~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~  147 (170)
                      .+.+++..+++           ++||+++|||++||||++..++++++|+|||.||+++|       +|+|++++||+++
T Consensus        86 ~f~~~~~G~~d-----------v~~lga~qvD~~GnvN~~~~~~~~~~G~GG~~d~~~~a-------~~~i~~~~~t~~~  147 (207)
T TIGR02428        86 SFAMIRGGHVD-----------VAVLGALQVSENGDLANWMIPGKLVPGMGGAMDLVAGA-------KRVIVAMEHTTKD  147 (207)
T ss_pred             heeeEcCCcee-----------EEEechHHhCCCCcccccccCCccccccCchhhhhcCC-------CEEEEEEeeECCC
Confidence            89999998887           99999999999999999999999999999999999997       7889999998873


Q ss_pred             -----CCCCC---CCCCCCceEEeeeeecc
Q psy2324         148 -----MPLLG---SNPGPPDYQASAWKIGL  169 (170)
Q Consensus       148 -----~~~l~---s~~~~~~~~~te~gia~  169 (170)
                           .|.+.   +..+.+++|||||||++
T Consensus       148 g~~~iv~~~~~~~t~~~~v~~vVTe~gV~~  177 (207)
T TIGR02428       148 GESKILKECTLPLTGAGCVDRIVTELAVFE  177 (207)
T ss_pred             CceEEcccCCCccCCCCcccEEECCCEEEE
Confidence                 33332   34456899999999975

Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.

>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2

Probab=98.53  E-value=7.5e-08  Score=88.09  Aligned_cols=147  Identities=16%  Similarity=0.195  Sum_probs=90.2

Q ss_pred             hHHHHHhcccC---CC--ceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCC-ceeeeccce
Q psy2324           3 PEAILSNIKHQ---IN--LGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNE-LVQMKRGTY   76 (170)
Q Consensus         3 pnAV~~~L~~~---kd--LgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np-~v~~~p~~~   76 (170)
                      +=|+...|+++   |+  -+.--+=++-.|++|.|+|.+..-         .-.-+|-....-. +.+|| .+++-...|
T Consensus       240 SLAv~~~l~~~M~~~~Ik~sFa~GGIT~~~v~mleeGL~~~l---------~DvQ~FDl~Av~S-~~~np~H~eisas~Y  309 (466)
T PF04223_consen  240 SLAVARFLREKMREKGIKGSFALGGITGYMVDMLEEGLFRKL---------LDVQCFDLDAVES-IRENPNHQEISASEY  309 (466)
T ss_dssp             HHHHHHHHHHHHHHTT--EEEEECEE-HHHHHHHHTTSECEE---------EECEESSHHHHHH-HHHTTTEEE--HHHH
T ss_pred             HHHHHHHHHHHHHHcCcEEEEECCcccHHHHHHHHcccchhh---------eecccCCHHHHHH-HHhCCCcEEEcHHHh
Confidence            44677777643   32  233345578899999999998532         2233343333333 33454 455555555


Q ss_pred             eccHH----HHHhcCCceEeccceEeeecccccccC-CCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCCCCCC
Q psy2324          77 SNDPA----IIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMPLL  151 (170)
Q Consensus        77 tN~P~----~Iar~~~~vsINsaleVDL~GQvnse~-iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~~~~l  151 (170)
                      -| |.    ..-++|  +.|-+|+|||+-=+||--+ -.+....|+||..|-+.||.++       ||..|.+....|.+
T Consensus       310 An-P~nkg~~vn~LD--~viLgAlEvD~dFNVNV~TgSdG~i~Ga~GGH~DtAagAklt-------Iiv~PL~rgRip~v  379 (466)
T PF04223_consen  310 AN-PHNKGAVVNQLD--VVILGALEVDTDFNVNVLTGSDGVIRGASGGHPDTAAGAKLT-------IIVAPLVRGRIPTV  379 (466)
T ss_dssp             C--TTSS--GGGG-S--EEEE--SEEETT--EE-SB-TTS-B-CE-CTHHHHHHHSSEE-------EEE--SEETTEESE
T ss_pred             cC-CCCCCccccccc--EEEEeeeeeccccceeEEECCCceEecCCCCCcchhhhcCeE-------EEEchhhcCCCCEE
Confidence            44 43    333332  7789999999999999887 5899999999999999999888       99999999988877


Q ss_pred             C------CCCC-CCceEEeeeeecc
Q psy2324         152 G------SNPG-PPDYQASAWKIGL  169 (170)
Q Consensus       152 ~------s~~~-~~~~~~te~gia~  169 (170)
                      .      .++| -+|++|||||||-
T Consensus       380 ~d~V~tv~TPGetVDVlVTe~GIAV  404 (466)
T PF04223_consen  380 VDKVTTVTTPGETVDVLVTERGIAV  404 (466)
T ss_dssp             ESS-SS-SB-GGG--EEEETTEEEE
T ss_pred             eCceeEEcCCCCceeEEEecCceee
Confidence            6      4455 8999999999983

8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.

>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]

Probab=97.73  E-value=0.00015  Score=61.78  Aligned_cols=80  Identities=20%  Similarity=0.315  Sum_probs=66.7

Q ss_pred             HHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccC-CCC-CCC------C
Q psy2324          82 IIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDN-SMP-LLG------S  153 (170)
Q Consensus        82 ~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~-~~~-~l~------s  153 (170)
                      .|+--+-.++|-.++|||=+|++|...+|++++-|+||..|.+.||.       |.||.|.-+.+ +.| .++      .
T Consensus        94 ~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmdl~~gak-------kvii~m~H~~k~g~~ki~~~ctlplt  166 (225)
T COG2057          94 MIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMDLVTGAK-------KVIVVMEHTKKSGVGKILKECTLPLT  166 (225)
T ss_pred             HHhCCceEEEEecceeecccCceeeeeECCccccCCccchhhhcCCc-------EEEEEeeeecccCCCcccCccccccc
Confidence            56666677999999999999999999999999999999999998874       45999988888 444 222      3


Q ss_pred             CCCCCceEEeeeeec
Q psy2324         154 NPGPPDYQASAWKIG  168 (170)
Q Consensus       154 ~~~~~~~~~te~gia  168 (170)
                      ..+.+|-||||-||=
T Consensus       167 ~~~~v~~iiTdl~V~  181 (225)
T COG2057         167 GNGCVDRVITDLAVF  181 (225)
T ss_pred             CCCCceEEEeccEEE
Confidence            445899999999874

>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]

Probab=97.39  E-value=0.00017  Score=65.88  Aligned_cols=149  Identities=17%  Similarity=0.185  Sum_probs=97.3

Q ss_pred             HHHHHhcccC---CCce--EEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCC-ceeeecccee
Q psy2324           4 EAILSNIKHQ---INLG--VHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNE-LVQMKRGTYS   77 (170)
Q Consensus         4 nAV~~~L~~~---kdLg--vhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np-~v~~~p~~~t   77 (170)
                      -||...|+++   +|..  .--+=++-.|++|.|.|.++.---       +-+|-..+.   .-+.+|| .++.-.-.|.
T Consensus       286 LaVtrfl~ekM~~~nI~AsfaLGGIT~~mVdLhE~gLi~kllD-------vQsFD~~aa---~Sla~np~h~EIsAn~YA  355 (513)
T COG3051         286 LAVTRFLEEKMRRRNIKASFALGGITATMVDLHEEGLIDKLLD-------VQSFDSDAA---QSLARNPNHIEISANQYA  355 (513)
T ss_pred             HHHHHHHHHHHHhhccceeeecccchHHHHHHHHHHHHHHHhc-------ccccCcHHH---HHHhcCCccEEechhhhc
Confidence            3666777653   2221  112346778889999888863211       223333322   1244454 3455555555


Q ss_pred             ccHHHHHhcCCc-eEeccceEeeecccccccC-CCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCCCCCCCCCC
Q psy2324          78 NDPAIIRQNHRM-TAINTCLEIDITGQVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMPLLGSNP  155 (170)
Q Consensus        78 N~P~~Iar~~~~-vsINsaleVDL~GQvnse~-iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~~~~l~s~~  155 (170)
                      |-..-=+..+++ +.|-||||||--=+||--+ ..+-.-..+||..|-+.+|.+|       ||.-|=...-.|.+..+-
T Consensus       356 np~skGa~vdrLdvviLSALEiDt~FNVNVmTgSdGvirgAsGGHcDTA~~A~ls-------iI~aPLvRgRIptvVd~V  428 (513)
T COG3051         356 NPGSKGASVDRLDVVILSALEIDTQFNVNVMTGSDGVIRGASGGHCDTAAAAALS-------IIVAPLVRGRIPTVVDNV  428 (513)
T ss_pred             CCCCCCceeceeeEEEEEeeeeccccceEEEecCCceeecccCCccchhhhhcee-------EEeehhhcCccceeeccc
Confidence            543333334444 7789999999988888655 3566667899999999999988       888777777788887554


Q ss_pred             ------C-CCceEEeeeeecc
Q psy2324         156 ------G-PPDYQASAWKIGL  169 (170)
Q Consensus       156 ------~-~~~~~~te~gia~  169 (170)
                            | -+|+.|||+|||-
T Consensus       429 ~tviTPG~svDvlvTd~GIav  449 (513)
T COG3051         429 TTVITPGSSVDVLVTDHGIAV  449 (513)
T ss_pred             eeEecCCCceeEEEeccceee
Confidence                  3 7899999999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
3gk7_A	448	Crystal Structure Of 4-Hydroxybutyrate Coa-Transfer		5e-38
3d3u_A	439	Crystal Structure Of 4-Hydroxybutyrate Coa-Transfer		3e-30
2oas_A	436	Crystal Structure Of 4-Hydroxybutyrate Coenzyme A T		2e-29
3eh7_A	434	The Structure Of A Putative 4-Hydroxybutyrate Coa-T		4e-29
3qli_A	455	Crystal Structure Of Ripa From Yersinia Pestis Leng		3e-23
3s8d_A	455	Crystal Structure Of Ripa From Yersinia Pestis Leng		4e-22
2nvv_A	506	Crystal Structure Of The Putative Acetyl-Coa Hydrol		1e-04

>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase From Clostridium Aminobutyricum Length = 448

Iteration: 1
 Score =  153 bits (386), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 67/134 (50%), Positives = 100/134 (74%)
Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+LS +K + +LG+H+E+++ GV+ L+ +GVI+ S+KSID+G++  T L+G K LYD
Sbjct: 219 IPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYD 278
Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           F  NN  V++K   Y N P+++ Q  +M  IN CL++D  GQ+VSDS+GT+ +SG GGQV
Sbjct: 279 FAANNPKVELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQV 338
Query: 122 DFMRGALTGLDGKG 135
           DF+RGA   +DGKG
Sbjct: 339 DFVRGASMSIDGKG 352

>pdb|3D3U|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase (Abft-2) From Porphyromonas Gingivalis. Northeast Structural Genomics Consortium Target Pgr26 Length = 439

Iteration: 1
 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 88/126 (69%)
Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+L  ++   +LG+HTE+ T GV+++   G+IN  KK++   ++  +L+ G K LYD
Sbjct: 220 IPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYD 279
Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           FV+NN +++     Y N+P +I +N RM +IN+CLE+D+ GQ  S+S+G   +SG GGQV
Sbjct: 280 FVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQAASESIGYEQFSGSGGQV 339
Query: 122 DFMRGA 127
           DF+RGA
Sbjct: 340 DFLRGA 345

>pdb|2OAS|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A Transferase (Atoa) In Complex With Coa From Shewanella Oneidensis, Northeast Structural Genomics Target Sor119. Length = 436

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 86/126 (68%)
Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+LS +    +LGVHTEL + G+++L   GVINN+KK    G++     LG + LYD
Sbjct: 214 IPDAVLSCLTGHKDLGVHTELFSDGILQLVEKGVINNTKKRFYPGKLVTGFALGSQKLYD 273
Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           +V +N  V        ND +IIR+N  + AIN+ L++D+TGQV +DS+GT+IYSG GGQ 
Sbjct: 274 YVDDNPAVIFXDIEQVNDTSIIRKNPNVXAINSALQVDLTGQVCADSIGTKIYSGVGGQX 333
Query: 122 DFMRGA 127
           DF+RGA
Sbjct: 334 DFIRGA 339

>pdb|3EH7|A Chain A, The Structure Of A Putative 4-Hydroxybutyrate Coa-Transferase From Porphyromonas Gingivalis W83 Length = 434

Iteration: 1
 Score =  123 bits (309), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 89/135 (65%)
Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A L  +K + +LG+HTE  + GV++L  SGVI   KK++  G+  AT L G + +Y 
Sbjct: 223 IPDAALLFLKDKKDLGIHTEXFSDGVVELVRSGVITGKKKTLHPGKXVATFLXGSEDVYH 282
Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           F+  N  V++    Y NDP +I QN    +IN+C+EID+ GQVVS+ +G++ +SG GGQV
Sbjct: 283 FIDKNPDVELYPVDYVNDPRVIAQNDNXVSINSCIEIDLXGQVVSECIGSKQFSGTGGQV 342
Query: 122 DFMRGALTGLDGKGL 136
           D++RGA    +GK +
Sbjct: 343 DYVRGAAWSKNGKSI 357

>pdb|3QLI|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis Length = 455

Iteration: 1
 Score =  104 bits (259), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 83/135 (61%)
Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           +P  +   +K + +LG+HTE+L PG++ L   GV+ N +K++DRG+   T  +G + +Y+
Sbjct: 245 LPNLVCGVLKDRNDLGIHTEVLNPGLVDLIRRGVVTNQRKTLDRGRSVFTFAMGQQEMYE 304
Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           +++++  +  +   Y NDP II QN  + +IN  L+ID+TG   S+ +    YS  GGQ+
Sbjct: 305 YLNDHPAIFSRPVDYVNDPHIIAQNDNVVSINATLQIDLTGACNSEHMLGHQYSASGGQL 364
Query: 122 DFMRGALTGLDGKGL 136
           DF+RGA     G+ +
Sbjct: 365 DFVRGAYASKGGRSI 379

>pdb|3S8D|A Chain A, Crystal Structure Of Ripa From Yersinia Pestis Length = 455

Iteration: 1
 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 80/135 (59%)
Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           +P  +   +K + +LG+HTE+L PG++ L   GV+ N +K++DRG+   T   G +  Y+
Sbjct: 245 LPNLVCGVLKDRNDLGIHTEVLNPGLVDLIRRGVVTNQRKTLDRGRSVFTFAXGQQEXYE 304
Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           +++++  +  +   Y NDP II QN  + +IN  L+ID+TG   S+      YS  GGQ+
Sbjct: 305 YLNDHPAIFSRPVDYVNDPHIIAQNDNVVSINATLQIDLTGACNSEHXLGHQYSASGGQL 364
Query: 122 DFMRGALTGLDGKGL 136
           DF+RGA     G+ +
Sbjct: 365 DFVRGAYASKGGRSI 379

>pdb|2NVV|A Chain A, Crystal Structure Of The Putative Acetyl-Coa HydrolaseTRANSFERASE Pg1013 From Porphyromonas Gingivalis, Northeast Structural Genomics Target Pgr16. Length = 506

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 18/120 (15%)
Query: 19  HTELLTPGVIKLFNSGVI---NNSKKSIDRG---QITATLLLGDKPLYDFVHNNELVQMK 72
           +TE++   VI L   G I   +    S+ R     I A L        DF  +  L++ +
Sbjct: 282 YTEVIQDAVIALXKKGRIKFASGCSLSVSRSVIQDIYANL--------DFFKDKILLRPQ 333
Query: 73  RGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGL 131
              YSN+P I+R+   +T INT LE DI G + S  + GTR  +G GG  DF R +   +
Sbjct: 334 E--YSNNPEIVRRLGVIT-INTALEADIFGNINSTHVSGTRXXNGIGGSGDFTRNSYVSI 390

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
3gk7_A	448	4-hydroxybutyrate COA-transferase; alpha/beta prot	2e-51
3eh7_A	434	4-hydroxybutyrate COA-transferase; citrate lyase,	2e-50
3d3u_A	439	4-hydroxybutyrate COA-transferase; alpha-beta prot	5e-50
3qli_A	455	Coenzyme A transferase; COEN transferase; 1.90A {Y	9e-50
2oas_A	436	ATOA, 4-hydroxybutyrate coenzyme A transferase; al	6e-49
2nvv_A	506	Acetyl-COA hydrolase/transferase family protein; a	6e-38
2g39_A	497	Acetyl-COA hydrolase; coenzyme A transferase, stru	6e-36
1xr4_A	509	Putative citrate lyase alpha chain/citrate-ACP TR;	1e-28
2hj0_A	519	Putative citrate lyase, ALFA subunit; alpha beta p	1e-18

>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A* Length = 448

 Score =  169 bits (430), Expect = 2e-51
 Identities = 67/134 (50%), Positives = 100/134 (74%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+LS +K + +LG+H+E+++ GV+ L+ +GVI+ S+KSID+G++  T L+G K LYD
Sbjct: 219 IPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYD 278

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           F  NN  V++K   Y N P+++ Q  +M  IN CL++D  GQ+VSDS+GT+ +SG GGQV
Sbjct: 279 FAANNPKVELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQV 338

Query: 122 DFMRGALTGLDGKG 135
           DF+RGA   +DGKG
Sbjct: 339 DFVRGASMSIDGKG 352

>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis} Length = 434

 Score =  166 bits (422), Expect = 2e-50
 Identities = 60/135 (44%), Positives = 93/135 (68%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A L  +K + +LG+HTE+ + GV++L  SGVI   KK++  G++ AT L+G + +Y 
Sbjct: 223 IPDAALLFLKDKKDLGIHTEMFSDGVVELVRSGVITGKKKTLHPGKMVATFLMGSEDVYH 282

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           F+  N  V++    Y NDP +I QN  M +IN+C+EID+ GQVVS+ +G++ +SG GGQV
Sbjct: 283 FIDKNPDVELYPVDYVNDPRVIAQNDNMVSINSCIEIDLMGQVVSECIGSKQFSGTGGQV 342

Query: 122 DFMRGALTGLDGKGL 136
           D++RGA    +GK +
Sbjct: 343 DYVRGAAWSKNGKSI 357

>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis} Length = 439

 Score =  165 bits (419), Expect = 5e-50
 Identities = 57/133 (42%), Positives = 89/133 (66%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+L  ++   +LG+HTE+ T GV+++   G+IN  KK++   ++  +L+ G K LYD
Sbjct: 220 IPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYD 279

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           FV+NN +++     Y N+P +I +N RM +IN+CLE+D+ GQ  S+S+G   +SG GGQV
Sbjct: 280 FVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQAASESIGYEQFSGSGGQV 339

Query: 122 DFMRGALTGLDGK 134
           DF+RGA     G 
Sbjct: 340 DFLRGAKRSKGGI 352

>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A Length = 455

 Score =  164 bits (418), Expect = 9e-50
 Identities = 48/133 (36%), Positives = 82/133 (61%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           +P  +   +K + +LG+HTE+L PG++ L   GV+ N +K++DRG+   T  +G + +Y+
Sbjct: 245 LPNLVCGVLKDRNDLGIHTEVLNPGLVDLIRRGVVTNQRKTLDRGRSVFTFAMGQQEMYE 304

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           +++++  +  +   Y NDP II QN  + +IN  L+ID+TG   S+ +    YS  GGQ+
Sbjct: 305 YLNDHPAIFSRPVDYVNDPHIIAQNDNVVSINATLQIDLTGACNSEHMLGHQYSASGGQL 364

Query: 122 DFMRGALTGLDGK 134
           DF+RGA     G+
Sbjct: 365 DFVRGAYASKGGR 377

>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis} Length = 436

 Score =  162 bits (412), Expect = 6e-49
 Identities = 62/135 (45%), Positives = 90/135 (66%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP+A+LS +    +LGVHTEL + G+++L   GVINN+KK    G++     LG + LYD
Sbjct: 214 IPDAVLSCLTGHKDLGVHTELFSDGILQLVEKGVINNTKKRFYPGKLVTGFALGSQKLYD 273

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
           +V +N  V        ND +IIR+N  + AIN+ L++D+TGQV +DS+GT+IYSG GGQ+
Sbjct: 274 YVDDNPAVIFMDIEQVNDTSIIRKNPNVMAINSALQVDLTGQVCADSIGTKIYSGVGGQM 333

Query: 122 DFMRGALTGLDGKGL 136
           DF+RGA     G+ +
Sbjct: 334 DFIRGAGLSEGGRSV 348

>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis} Length = 506

 Score =  134 bits (339), Expect = 6e-38
 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 11/131 (8%)

Query: 2   IPEAI---LSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKP 58
           +  A+   L +        ++TE++   VI L   G I         G   +      + 
Sbjct: 262 VANAVLGALGDNPDIPAFNMYTEVIQDAVIALMKKGRIKF-----ASGCSLSVSRSVIQD 316

Query: 59  LYDFV-HNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSG 116
           +Y  +    + + ++   YSN+P I+R    +  INT LE DI G + S  + GTR+ +G
Sbjct: 317 IYANLDFFKDKILLRPQEYSNNPEIVR-RLGVITINTALEADIFGNINSTHVSGTRMMNG 375

Query: 117 FGGQVDFMRGA 127
            GG  DF R +
Sbjct: 376 IGGSGDFTRNS 386

>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2 Length = 497

 Score =  129 bits (325), Expect = 6e-36
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 10/130 (7%)

Query: 2   IPEAILSNIKHQI--NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPL 59
           I  A++  +      NL +++E+L      L ++G +         G         +  +
Sbjct: 267 IANAVMCGLIESPFENLTMYSEVLQDSTFDLIDAGKLRF-----ASGSSITLSPRRNADV 321

Query: 60  YDFV-HNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGF 117
           +  +    + + ++    SN P ++R    +  INT LE DI G V S  + GT++ +G 
Sbjct: 322 FGNLERYKDKLVLRPQEISNHPEVVR-RLGIIGINTALEFDIYGNVNSTHVGGTKMMNGI 380

Query: 118 GGQVDFMRGA 127
           GG  DF R A
Sbjct: 381 GGSGDFARNA 390

>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2 Length = 509

 Score =  109 bits (273), Expect = 1e-28
 Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 16/133 (12%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVI-----KLFNSGVINNSKKSIDRGQITATLLLGD 56
              A+   ++ ++     T     G I      L   G+I     +              
Sbjct: 280 ASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKALLDTQS---------FDG 330

Query: 57  KPLYDFVHNNELVQMKRGTYSNDPAIIRQNHRM-TAINTCLEIDITGQVVSDSLG-TRIY 114
                   N   +++    Y+N  +      R+   + + LEID+   V   +     + 
Sbjct: 331 DAARSLAQNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLR 390

Query: 115 SGFGGQVDFMRGA 127
              GG  D   GA
Sbjct: 391 GASGGHSDTAAGA 403

>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Length = 519

 Score = 80.8 bits (199), Expect = 1e-18
 Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 15/133 (11%)

Query: 2   IPEAILSNIK-HQINLGVHTEL----LTPGVIKLFNSGVINNSKKSIDRGQITATLLLGD 56
              A+   ++   I   +        +T  +++L   G+++      D    +A  L   
Sbjct: 283 ASLAVTRFMREQMIKDDIKANFALGGITNAMVELLEEGLVDKILDVQDFDHPSAVSL--- 339

Query: 57  KPLYDFVHNNELVQMKRGTYSNDPAIIRQ-NHRMTAINTCLEIDITGQVVSDSLG-TRIY 114
                  +  +  ++    Y++  +     N     + + LE+D    V   +     I 
Sbjct: 340 -----DRNAEKHYEIDANMYASPLSKGSVINQLDICVLSALEVDTNFNVNVMTGSDGVIR 394

Query: 115 SGFGGQVDFMRGA 127
              GG  D    A
Sbjct: 395 GASGGHCDTAFAA 407

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
3qli_A	455	Coenzyme A transferase; COEN transferase; 1.90A {Y	100.0
3eh7_A	434	4-hydroxybutyrate COA-transferase; citrate lyase,	100.0
3gk7_A	448	4-hydroxybutyrate COA-transferase; alpha/beta prot	100.0
2oas_A	436	ATOA, 4-hydroxybutyrate coenzyme A transferase; al	100.0
3d3u_A	439	4-hydroxybutyrate COA-transferase; alpha-beta prot	100.0
2g39_A	497	Acetyl-COA hydrolase; coenzyme A transferase, stru	100.0
4eu9_A	514	Succinyl-COA:acetate coenzyme A transferase; HET:	100.0
2nvv_A	506	Acetyl-COA hydrolase/transferase family protein; a	100.0
1xr4_A	509	Putative citrate lyase alpha chain/citrate-ACP TR;	100.0
2hj0_A	519	Putative citrate lyase, ALFA subunit; alpha beta p	100.0
3k6m_A	481	Succinyl-COA:3-ketoacid-coenzyme A transferase 1,	99.85
2ahu_A	531	Putative enzyme YDIF; COA transferase, glutamyl th	99.82
1poi_B	260	Glutaconate coenzyme A-transferase; COA, glutamate	99.82
3rrl_B	207	Succinyl-COA:3-ketoacid-coenzyme A transferase SU;	99.78

>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A

Probab=100.00  E-value=2.2e-57  Score=410.88  Aligned_cols=167  Identities=30%  Similarity=0.565  Sum_probs=159.6

Q ss_pred             chHHHHHhcccCCCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccceeccHH
Q psy2324           2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPA   81 (170)
Q Consensus         2 ipnAV~~~L~~~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~~tN~P~   81 (170)
                      |||||+..|.++||||+|||||+|++++|+++|++|+++|++++|+++++|++|+++||+|+|+||.|+|+|++|+|||+
T Consensus       245 ip~Av~~~L~~~~~lgi~tE~~~d~~~dLi~aG~i~~~~K~~~~G~~v~~f~~gs~~ly~~~~~np~~~~~~~~y~N~p~  324 (455)
T 3qli_A          245 LPNLVCGVLKDRNDLGIHTEVLNPGLVDLIRRGVVTNQRKTLDRGRSVFTFAMGQQEMYEYLNDHPAIFSRPVDYVNDPH  324 (455)
T ss_dssp             HHHHHHHHGGGCCSBEEBCSEECHHHHHHHHHTCBCCTTCSSSTTSEEESEECCCHHHHHHHTTCTTEEECBHHHHTCHH
T ss_pred             HHHHHHHhcCcCCCeEEEcCCcccchHHHHHCCCcccccccccCCceEEEeccchHHHHHHHhhCCCEEEeeccccCCHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC------CCCCC---
Q psy2324          82 IIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS------MPLLG---  152 (170)
Q Consensus        82 ~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~------~~~l~---  152 (170)
                      +|+|+++|+|||+|+||||+||||++++|++++||+|||.||+|||++|+|  ||+||+||||+++      .|.+.   
T Consensus       325 ~i~~~~~~i~in~a~evd~~G~v~~~~~~~~~~~G~GG~~Df~~gA~~s~g--gk~ii~~~s~~k~G~is~Iv~~~~~~v  402 (455)
T 3qli_A          325 IIAQNDNVVSINATLQIDLTGACNSEHMLGHQYSASGGQLDFVRGAYASKG--GRSIIATPSTAAKGTVSRIIPRIDGPV  402 (455)
T ss_dssp             HHTTSTTEEEEEECSEEETTSCEECCCSTTCCCGGGSSHHHHHHHHHHSTT--CEEEEECCSEETTTTEESEESCCSSSC
T ss_pred             HHhCCCCcEEeeeeEEEecCCCeeeeccCCeeecCcChhHHHHHHHhhcCC--CcEEEEEeCccCCCCCCeEeccCCCCc
Confidence            999999999999999999999999999999999999999999999999999  9999999999984      24443   


Q ss_pred             -CCCCCCceEEeeeeeccC
Q psy2324         153 -SNPGPPDYQASAWKIGLI  170 (170)
Q Consensus       153 -s~~~~~~~~~te~gia~~  170 (170)
                       +.-+.+||||||||||++
T Consensus       403 tt~~~~v~~vvTE~Gva~l  421 (455)
T 3qli_A          403 TTPRIDTHYIVTEFGAVNL  421 (455)
T ss_dssp             SBCTTTCCEEEETTEEEEC
T ss_pred             ccCcccccEEEeccEEEEC
Confidence             344599999999999974

>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}

Probab=100.00  E-value=1e-54  Score=390.67  Aligned_cols=167  Identities=38%  Similarity=0.714  Sum_probs=160.1

Q ss_pred             chHHHHHhcccCCCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccceeccHH
Q psy2324           2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPA   81 (170)
Q Consensus         2 ipnAV~~~L~~~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~~tN~P~   81 (170)
                      |||||+..|.+++|||+||||++|++++|+|+|++++.+|++++|+++++|++|+++||+|+++||.+.|+|++|+|||+
T Consensus       223 ip~AV~~~L~~~~~lgi~tE~~~d~~~~lie~G~i~~~~k~~~~g~~~~~f~~G~~~~y~~~~~np~~~~~~~~~~n~p~  302 (434)
T 3eh7_A          223 IPDAALLFLKDKKDLGIHTEMFSDGVVELVRSGVITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPR  302 (434)
T ss_dssp             HHHHHHHTTTTCCSBEEECSEECHHHHHHHHTTSBCCTTCSSSTTCEEESEECCCHHHHHHHTTCTTEEECCHHHHTCHH
T ss_pred             HHHHHHHHhhhcCCceEEccCcchhHHHHHHCCCccceeecccCCceeEeecchHHHHHHHHHhCCCeEEeccccccCHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccC-C-----CCCCCCCC
Q psy2324          82 IIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDN-S-----MPLLGSNP  155 (170)
Q Consensus        82 ~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~-~-----~~~l~s~~  155 (170)
                      +|+|+|+|+|||+|+||||+||||++++|++++||+|||.||+|||++|+|  ||+|||+|||++ +     .|.+..++
T Consensus       303 ~i~~~d~~i~in~a~evD~~G~vn~~~~g~~~~~G~GG~~Df~~ga~~s~g--gk~ii~~~st~~~G~is~iv~~~~~g~  380 (434)
T 3eh7_A          303 VIAQNDNMVSINSCIEIDLMGQVVSECIGSKQFSGTGGQVDYVRGAAWSKN--GKSIMAIPSTAKNGTASRIVPIIAEGA  380 (434)
T ss_dssp             HHTTSSSEEEEECCSEEETTCCEECCSTTSCCSBCCCTHHHHHHHHHHSTT--CEEEEECCSEETTTTEESEESSCCTTC
T ss_pred             HHcCCCCcEEEehhheeccCCCeeeeccCCeeecccCchHHHhccccccCC--CceEEEEeeecCCCCCCeEeeCCCCCC
Confidence            999999999999999999999999999999999999999999999999999  999999999986 3     36666644


Q ss_pred             ------CCCceEEeeeeeccC
Q psy2324         156 ------GPPDYQASAWKIGLI  170 (170)
Q Consensus       156 ------~~~~~~~te~gia~~  170 (170)
                            +.+||||||||||++
T Consensus       381 ~v~~~~~~v~~vVTE~Gva~L  401 (434)
T 3eh7_A          381 AVTTLRNEVDYVVTEYGIAQL  401 (434)
T ss_dssp             CEEECTTTCCEEEETTEEEEC
T ss_pred             CceeCccceeEEEcccEEEEC
Confidence                  399999999999974

>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*

Probab=100.00  E-value=1.1e-53  Score=385.81  Aligned_cols=169  Identities=42%  Similarity=0.790  Sum_probs=161.8

Q ss_pred             chHHHHHhcccCCCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccceeccHH
Q psy2324           2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPA   81 (170)
Q Consensus         2 ipnAV~~~L~~~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~~tN~P~   81 (170)
                      ||+||+..|.+++||++||||++|++++|+|+|++++++|.+++||.+++|++|+++||+|+|+||.|+|+|++|+|+|+
T Consensus       219 ip~aV~~~L~~~~~l~~~tE~~~d~~~~l~e~G~v~~~~k~i~~g~~~~~f~~G~~~~y~~~~~~~~~~~~~~~~~N~p~  298 (448)
T 3gk7_A          219 IPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVDYINHPS  298 (448)
T ss_dssp             HHHHHHHTCTTCCSBEEEEEEECHHHHHHHHTTSBCCTTCSSSTTSEEEEEECSCHHHHHHHTTCTTEEECBHHHHTCHH
T ss_pred             HHHHHHHHhhhcCCeeEEcCCChhhhhhhhhCCcccCchhcccCCccEEEEChhHHHHHHHhcCCCCEEEECCcccCCHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCCC---------CCCC
Q psy2324          82 IIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSM---------PLLG  152 (170)
Q Consensus        82 ~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~~---------~~l~  152 (170)
                      +|+|+++++|||+|+||||+||||++++|++++||+|||.||+|||++|+||+||+|||||||+++.         |.+.
T Consensus       299 ~i~~l~~~iain~alevD~~G~vns~~~g~~~~~G~GG~~Df~~gA~~s~g~~~k~Ii~~~st~k~G~g~~is~IV~~~~  378 (448)
T 3gk7_A          299 VVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKGKAIIAMPSVAKKKDGSMISKIVPFID  378 (448)
T ss_dssp             HHTTSTTEEEEEECSEEETTCCEECSEETTEECSCCTTHHHHHHHHHTCTTSCCEEEEECCSEEECTTSCEEESEESSCC
T ss_pred             HHhccCCcEEEehheeeccCCCeeeeccCCceecccCchHHHhcchhhccCCCCcEEEEEeeeecCCCCCCCCeEeecCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999643         5666


Q ss_pred             CCC------CCCceEEeeeeeccC
Q psy2324         153 SNP------GPPDYQASAWKIGLI  170 (170)
Q Consensus       153 s~~------~~~~~~~te~gia~~  170 (170)
                      .++      +.+||||||||||++
T Consensus       379 ~g~~v~t~~~~v~~iVTE~Gva~L  402 (448)
T 3gk7_A          379 HGAAVTTSRNDADYVVTEYGIAEM  402 (448)
T ss_dssp             TTCCCSBCTTTCCEEEETTEEEEC
T ss_pred             CCCCceeCcCceEEEEeceEEEEc
Confidence            543      499999999999974

>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}

Probab=100.00  E-value=1.2e-53  Score=383.04  Aligned_cols=167  Identities=39%  Similarity=0.644  Sum_probs=159.0

Q ss_pred             chHHHHHhcccCCCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccceeccHH
Q psy2324           2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPA   81 (170)
Q Consensus         2 ipnAV~~~L~~~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~~tN~P~   81 (170)
                      ||+||+..|.++++|++|||||+|++++|+|+|++++..|++++|+++++|++|+++||||+|+||.++|+|++|+|||+
T Consensus       214 ip~av~~~l~~~~~l~i~te~~~d~~~~l~~~G~i~~~~k~~~~g~~~~~f~~Gs~~~y~~~~~n~~~~~~~~~~~n~~~  293 (436)
T 2oas_A          214 IPDAVLSCLTGHKDLGVHTELFSDGILQLVEKGVINNTKKRFYPGKLVTGFALGSQKLYDYVDDNPAVIFMDIEQVNDTS  293 (436)
T ss_dssp             HHHHHHHTCTTCCSBEEBCSEECHHHHHHHHTTSBCCTTCSSSTTSEEESEECSCHHHHHHHTTCTTEEECCHHHHTCHH
T ss_pred             HHHHHHHHHhhcCceeEEeccccHhHHHHHHCCCcccccccccCCcceeeeccchHHHHHHHhcCCcEEeecccccCCHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC------CCCCC---
Q psy2324          82 IIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS------MPLLG---  152 (170)
Q Consensus        82 ~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~------~~~l~---  152 (170)
                      +|+++++++|||+|+|||++||||++++|++++||+|||.||++||++|+|  |||||||+||+++      .|.+.   
T Consensus       294 ~i~~~~~~~~i~~a~evD~~G~vn~~~~g~~~~~G~GG~~D~~~gA~~~~g--gk~ii~~~~t~k~G~iskiv~~~~~g~  371 (436)
T 2oas_A          294 IIRKNPNVMAINSALQVDLTGQVCADSIGTKIYSGVGGQMDFIRGAGLSEG--GRSVIALPSTAAGGRISRIASVLSPGA  371 (436)
T ss_dssp             HHTTSTTEEEEECCSEEETTCCEECSEETTEECSCCTTHHHHHHHHHHSTT--CEEEEECCSEETTTTEESEESSCCTTC
T ss_pred             HHhCCCCcEEEeccceecCCCCeeeeecCCeeecccccHHHHhhhhhhcCC--CcEEEEEeeecCCCCCCEEeeccCCCC
Confidence            999999999999999999999999999999999999999999999999999  9999999999873      35553   


Q ss_pred             ---CCCCCCceEEeeeeeccC
Q psy2324         153 ---SNPGPPDYQASAWKIGLI  170 (170)
Q Consensus       153 ---s~~~~~~~~~te~gia~~  170 (170)
                         +.-+.+||||||||||++
T Consensus       372 ~v~t~~~~v~~vvTE~Gva~l  392 (436)
T 2oas_A          372 GVVTTRAHVHYIVTEYGAANL  392 (436)
T ss_dssp             CEEECTTTCCEEEETTEEEEC
T ss_pred             CcccCcccCCEEECCCEEEEC
Confidence               233499999999999974

>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}

Probab=100.00  E-value=3.2e-48  Score=347.00  Aligned_cols=167  Identities=37%  Similarity=0.727  Sum_probs=144.4

Q ss_pred             chHHHHHhcccCCCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccceeccHH
Q psy2324           2 IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDPA   81 (170)
Q Consensus         2 ipnAV~~~L~~~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~~tN~P~   81 (170)
                      +|+||+..|.+++||++||||++|++++|+|+|+++++.|.+++||.+++|++|+++||+|+++||.+.|+|.+++|||+
T Consensus       220 ip~av~~~l~~~~~l~i~te~~~~~~~~l~~~G~~~~~~~~~~~g~~~~~~~~g~~~~y~~~~~~~~~~~~~~~~~n~p~  299 (439)
T 3d3u_A          220 IPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPD  299 (439)
T ss_dssp             HHHHHHHTTTTCCSBEEECSCBCHHHHHHHHHTCBCCSSCSSSTTSEEESBBCCCHHHHHHHTTCTTEEECBHHHHTCHH
T ss_pred             HHHHHHHHHhhCCCceEEEEEecchhHhhccCCcccccccccCCCceeEEEccCchHHHHHhcCCCCEEEEeccccCCHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccC-C-----CCCCC---
Q psy2324          82 IIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDN-S-----MPLLG---  152 (170)
Q Consensus        82 ~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~-~-----~~~l~---  152 (170)
                      +|+|++++++||+|+|||++||||++++|+++++|+|||.||++||++|+|  ||+||+++||++ +     .|.+.   
T Consensus       300 ~i~~~~~dv~i~ga~evD~~G~vn~~~~g~~~~~G~GG~~D~~~~A~~s~~--gk~ii~~~~t~k~G~~s~iv~~~~~g~  377 (439)
T 3d3u_A          300 VIGKNDRMVSINSCLEMDLMGQAASESIGYEQFSGSGGQVDFLRGAKRSKG--GISIMAFPSTAKKGTESRIVPILKEGA  377 (439)
T ss_dssp             HHHHSSSEEEEECCSCEETTSCC--------------CHHHHHHHHTTSTT--CEEEEECCSEETTTTEESEESSCC---
T ss_pred             HhhccCCcEEEehheEecCCCCEeeeccCCeeecccccHHHHhhcccccCC--CeEEEEEeeecCCCCCCeEeECccCCC
Confidence            999999999999999999999999999999999999999999999999999  999999999975 3     34442   


Q ss_pred             ---CCCCCCceEEeeeeeccC
Q psy2324         153 ---SNPGPPDYQASAWKIGLI  170 (170)
Q Consensus       153 ---s~~~~~~~~~te~gia~~  170 (170)
                         +.-+.+|+|||||||++.
T Consensus       378 ~v~~~~~~v~~vVTE~gva~l  398 (439)
T 3d3u_A          378 CVTTGRNEVDYVVTEYGVARL  398 (439)
T ss_dssp             ---CCSTTCSEEEETTEEEEC
T ss_pred             CceeCCCcceEEECCCEEEEe
Confidence               333599999999999863

>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2

Probab=100.00  E-value=4e-44  Score=326.40  Aligned_cols=153  Identities=22%  Similarity=0.394  Sum_probs=140.2

Q ss_pred             chHHHHHhcccC--CCceEEecccchHHHHHHHcCCccccccccCCCceEEEeec---CchHHHHhccc-CCceeeeccc
Q psy2324           2 IPEAILSNIKHQ--INLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLL---GDKPLYDFVHN-NELVQMKRGT   75 (170)
Q Consensus         2 ipnAV~~~L~~~--kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~---Gs~~LY~~~d~-np~v~~~p~~   75 (170)
                      |||||+..|.++  ++|++|||||+|++++|+|+|++++.        .+++|++   |+++||+|+++ ||.|+|+|++
T Consensus       267 ip~aV~~~l~~~~~~~l~~~se~~~d~~~~li~aG~~~~~--------~~~~f~~~~~g~~~~~~~~~~~~~~i~~~~~~  338 (497)
T 2g39_A          267 IANAVMCGLIESPFENLTMYSEVLQDSTFDLIDAGKLRFA--------SGSSITLSPRRNADVFGNLERYKDKLVLRPQE  338 (497)
T ss_dssp             HHHHHHHGGGSSSCCSEEEECSEECHHHHHHHHTTCEEEE--------EESEECCCHHHHHHHHHSGGGTGGGEEECBHH
T ss_pred             HHHHHHHHhhhcccccceEEeeccchhHHHHHHCCCCcce--------eeeeeccccccHHHHHHhHHhcCCceeeeccc
Confidence            899999999988  99999999999999999999999986        4888998   57999999999 7999999999


Q ss_pred             eeccHHHHHhcCCceEeccceEeeecccccccCC-CCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC------C
Q psy2324          76 YSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS------M  148 (170)
Q Consensus        76 ~tN~P~~Iar~~~~vsINsaleVDL~GQvnse~i-G~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~------~  148 (170)
                      |+|||++|+++ +++|||+|+|||++||||++++ |++++||+|||.||+|||++|       |||+|||+++      .
T Consensus       339 ~~N~p~~i~~~-~~iain~a~evD~~G~vn~~~~~g~~~~~G~GG~~Df~~gA~~s-------ii~~~st~k~G~iskIv  410 (497)
T 2g39_A          339 ISNHPEVVRRL-GIIGINTALEFDIYGNVNSTHVGGTKMMNGIGGSGDFARNAHLA-------IFVTKSIAKGGNISSVV  410 (497)
T ss_dssp             HHTCHHHHHHH-TCEEEEECSEEETTSCEESSEETTTEECSCCTTHHHHHHHCSEE-------EEECCSEEGGGTEESEE
T ss_pred             ccCCHHHHhCC-CcEEEehhheccCCCceeeeeccCCcEEeccCcchhhhccCCEE-------EEEEccccCCCCcCeEe
Confidence            99999999999 7999999999999999999995 999999999999999999865       9999999763      3


Q ss_pred             CCCC---CCCCCCceEEeeeeeccC
Q psy2324         149 PLLG---SNPGPPDYQASAWKIGLI  170 (170)
Q Consensus       149 ~~l~---s~~~~~~~~~te~gia~~  170 (170)
                      |.++   ++-+.+||||||||||++
T Consensus       411 ~~~~~v~t~~~~v~~vVTE~gva~l  435 (497)
T 2g39_A          411 PMVSHVDHTEHDVDILVTEQGLADL  435 (497)
T ss_dssp             SSCSSCSBCGGGCCEEEETTEEEEC
T ss_pred             eCCCCeecCCCceeEEECCCEEEEc
Confidence            4443   344699999999999974

>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*

Probab=100.00  E-value=2.6e-44  Score=327.62  Aligned_cols=156  Identities=21%  Similarity=0.294  Sum_probs=134.0

Q ss_pred             chHHHHHhccc--CCCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCC-ceeeeccceec
Q psy2324           2 IPEAILSNIKH--QINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNE-LVQMKRGTYSN   78 (170)
Q Consensus         2 ipnAV~~~L~~--~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np-~v~~~p~~~tN   78 (170)
                      |||||+..|++  +|||++|||||+|++++|+|+|++++++|+     .++.++.|+++||+|+|.|+ ...++|.+++|
T Consensus       273 ip~AV~~~L~~~~~~~l~~~te~~~d~~~~L~e~G~i~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~n  347 (514)
T 4eu9_A          273 VANAVLEGLKEGPFENLVGYSEVIQDGMLAMLDSGRMRIASAS-----SFSLSPEAAEEINNRMDFFRSKIILRQQDVSN  347 (514)
T ss_dssp             HHHHHHHHHHHSSCCSEEEESSEECHHHHHHHHHTSEEEEEES-----EECCCHHHHHHHHHTHHHHHTTEEEEBHHHHT
T ss_pred             hHHHHHHHHhhcCCcCceEeecCcchhhHhHHhCCceeccccc-----eEEecHHHHHHHHhhHHhCcCcccccchhccC
Confidence            89999999976  599999999999999999999999998864     35667778999999999864 45677888888


Q ss_pred             cHHHHHhcCCceEeccceEeeecccccccCC-CCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCCC------CCC
Q psy2324          79 DPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSM------PLL  151 (170)
Q Consensus        79 ~P~~Iar~~~~vsINsaleVDL~GQvnse~i-G~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~~------~~l  151 (170)
                      +|.++++. +++|||+|+||||+|||||+++ |+|++||+|||.||+|||++|       |||+|||+++.      |.+
T Consensus       348 ~~~i~~~~-~~iain~a~EvDl~GqVns~~~~g~~~~sG~GG~~Df~~gA~~s-------i~~~~st~k~g~is~ivp~~  419 (514)
T 4eu9_A          348 SPGIIRRL-GCIAMNGMIEADIYGNVNSTRVMGSKMMNGIGGSGDFARSSYLS-------IFLSPSTAKGGKISAIVPMA  419 (514)
T ss_dssp             CHHHHHHH-TCEEEECCSEEETTCCEESSEETTTEECSCCTTHHHHHHHSSEE-------EEECCSEETTTTEESEESSC
T ss_pred             cHHHhccC-CeEEEecceEecccCceeeeeccCcceecCccchHHHhhccCcE-------EEEEeeecCCCcccccccCC
Confidence            88877655 9999999999999999999996 999999999999999999754       99999999852      222


Q ss_pred             C---CCCCCCceEEeeeeeccC
Q psy2324         152 G---SNPGPPDYQASAWKIGLI  170 (170)
Q Consensus       152 ~---s~~~~~~~~~te~gia~~  170 (170)
                      .   +.-..+||||||||||+.
T Consensus       420 ~~v~~~~~~v~~vVTE~Gva~L  441 (514)
T 4eu9_A          420 AHVDHIMQDAQIFVTEQGLADL  441 (514)
T ss_dssp             SSCSBCGGGCCEEEETTEEEEC
T ss_pred             CCccCCCCcCCEEEcCCEEEEe
Confidence            2   222389999999999974

>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}

Probab=100.00  E-value=7.1e-43  Score=318.77  Aligned_cols=153  Identities=25%  Similarity=0.425  Sum_probs=139.4

Q ss_pred             chHHHHHhcccCC---CceEEecccchHHHHHHHcCCccccccccCCCceEEEeec---CchHHHHhccc-CCceeeecc
Q psy2324           2 IPEAILSNIKHQI---NLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLL---GDKPLYDFVHN-NELVQMKRG   74 (170)
Q Consensus         2 ipnAV~~~L~~~k---dLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~---Gs~~LY~~~d~-np~v~~~p~   74 (170)
                      |||||+..|.+++   +|++||||++|++++|+|+|++++.        ++++|++   |+++||||+++ ||.|+|+|+
T Consensus       262 ip~aV~~~l~~~~~~~~l~i~te~~~d~~~~lieaG~i~~~--------~~~~f~~~~~g~~~~~~~~~~~~~~i~~~~~  333 (506)
T 2nvv_A          262 VANAVLGALGDNPDIPAFNMYTEVIQDAVIALMKKGRIKFA--------SGCSLSVSRSVIQDIYANLDFFKDKILLRPQ  333 (506)
T ss_dssp             HHHHHHHHHHHCTTSCCEEEECSEECHHHHHHHHTTSEEEE--------EESEECCCHHHHHHHHTCHHHHTTTEEECBH
T ss_pred             HHHHHHHHhhhcCCcccceEEecccccchHHHHHCCCCCCe--------eeeEeecccccHHHHHhhHHhcCCceeeecc
Confidence            8999999998775   9999999999999999999999986        4888988   58999999999 799999999


Q ss_pred             ceeccHHHHHhcCCceEeccceEeeecccccccCC-CCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC------
Q psy2324          75 TYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS------  147 (170)
Q Consensus        75 ~~tN~P~~Iar~~~~vsINsaleVDL~GQvnse~i-G~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~------  147 (170)
                      +|+|+|++|+++ +++|||+|+|||++||||++++ |++++||+|||.||+|||++|       |+|+|||+++      
T Consensus       334 ~~~N~p~~i~~~-~~iain~alevD~~G~vn~~~~~g~~~~~G~GG~~Df~~gA~~s-------i~~~~st~k~G~is~i  405 (506)
T 2nvv_A          334 EYSNNPEIVRRL-GVITINTALEADIFGNINSTHVSGTRMMNGIGGSGDFTRNSYVS-------IFTTPSVMKDGKISSF  405 (506)
T ss_dssp             HHHTCHHHHHHH-TCEEEEECSEEETTSCEECSEETTTEECSCCTTHHHHHHHSSSE-------EEECCSEEGGGTEESE
T ss_pred             cccCCHHHHhCC-CcEEEehhheecCCCceeeeeccCCceEcccCcHHHHhhccCeE-------EEEeccccCCCCCCeE
Confidence            999999999999 7999999999999999999995 999999999999999999855       9999999763      


Q ss_pred             CCCCC---CCCCCCceEEeeeeeccC
Q psy2324         148 MPLLG---SNPGPPDYQASAWKIGLI  170 (170)
Q Consensus       148 ~~~l~---s~~~~~~~~~te~gia~~  170 (170)
                      .|.+.   +.-+.+|+||||||||++
T Consensus       406 V~~~~~v~~~~~~v~~vVTE~Gva~L  431 (506)
T 2nvv_A          406 VPMVAHHDHSEHSVKVIISEWGVADL  431 (506)
T ss_dssp             ESSCSSCSBCTTTCCEEEETTEEEEC
T ss_pred             EeCCCCcccCCCceeEEECCCEEEEc
Confidence            34333   445699999999999974

>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2

Probab=100.00  E-value=2.9e-37  Score=282.00  Aligned_cols=149  Identities=15%  Similarity=0.169  Sum_probs=135.7

Q ss_pred             chHHHHHhcccC-CCceEEecc----cchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCc-eeeeccc
Q psy2324           2 IPEAILSNIKHQ-INLGVHTEL----LTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNEL-VQMKRGT   75 (170)
Q Consensus         2 ipnAV~~~L~~~-kdLgvhTEm----~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~-v~~~p~~   75 (170)
                      ||+||+..|.++ ++|++|||+    ++|++++|+|+|++++..+       +++|++|++   +|+++||. |+|+|++
T Consensus       280 ip~aV~~~l~~~~~~l~i~se~g~~g~~d~~~~l~e~G~i~~~~~-------~~~f~~g~~---~~~~~n~~~~~~~~~~  349 (509)
T 1xr4_A          280 ASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKALLD-------TQSFDGDAA---RSLAQNPHHIEISTNQ  349 (509)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEEEECHHHHHHHHTTSBSCEEE-------EEECSHHHH---HHHHHCTTEEECCHHH
T ss_pred             HHHHHHHHhhhhcccceeecccccCCcCCccHhHHhCCCccCCcc-------eeEeeccHH---HHHHhCCcceEEeccc
Confidence            899999999998 999999999    9999999999999998643       899999999   58999997 9999999


Q ss_pred             eeccH---HHHHhcCCceEeccceEeeecccccccC-CCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCCCCCC
Q psy2324          76 YSNDP---AIIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSMPLL  151 (170)
Q Consensus        76 ~tN~P---~~Iar~~~~vsINsaleVDL~GQvnse~-iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~~~~l  151 (170)
                      |+|+|   ++++++|  ++||+|+|||++||||+++ +|+++++|+|||.||++||++|       ||+++||+++.|.+
T Consensus       350 ~~n~~~~~~~~~~ld--iai~galevD~~G~vn~~~~~~g~~~~G~GG~~D~~~gA~~s-------ii~~~~t~~~~skI  420 (509)
T 1xr4_A          350 YANPASKGAACERLN--VVMLSALEIDVNFNVNVMTGSNGVLRGASGGHSDTAAGADLT-------IITAPLVRGRIPCV  420 (509)
T ss_dssp             HTCTTCSCCGGGGCS--EEEECCSEECTTCCEECSBCTTSCBCSBCTTHHHHHHHSSEE-------EEECCSEETTEESB
T ss_pred             cccCcchhhhhcCCC--eEEeeeEEEccCCceeeeeccCCeEecccccHHHHhhccCeE-------EEEEcccCCCCCeE
Confidence            99999   9999997  9999999999999999999 7999999999999999999864       99999998753333


Q ss_pred             C-------CCCCCCceEEeeeeecc
Q psy2324         152 G-------SNPGPPDYQASAWKIGL  169 (170)
Q Consensus       152 ~-------s~~~~~~~~~te~gia~  169 (170)
                      .       +.-+.+||||||||||+
T Consensus       421 V~~~~~v~t~~~~V~~iVTE~Gva~  445 (509)
T 1xr4_A          421 VEKVLTTVTPGASVDVLVTDHGIAV  445 (509)
T ss_dssp             CSSCSSCSBCGGGCCEEEETTEEEE
T ss_pred             eeCCCCcccCcCeeCEEECCcEEEE
Confidence            2       23349999999999997

>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}

Probab=100.00  E-value=2.3e-36  Score=276.74  Aligned_cols=149  Identities=15%  Similarity=0.145  Sum_probs=135.1

Q ss_pred             chHHHHHhcccC-CCceEEecc----cchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCC--ceeeecc
Q psy2324           2 IPEAILSNIKHQ-INLGVHTEL----LTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNE--LVQMKRG   74 (170)
Q Consensus         2 ipnAV~~~L~~~-kdLgvhTEm----~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np--~v~~~p~   74 (170)
                      +|+||+..|.++ ++|++|||+    ++|++++|+|+|++++..       .+++|++|+   |+|+++||  .++++|+
T Consensus       283 ip~aV~~~L~~~~~~l~i~se~g~~g~~~~~~~lieaG~i~~~~-------~~~~f~~G~---~~~~~~n~~~~~~~~~~  352 (519)
T 2hj0_A          283 ASLAVTRFMREQMIKDDIKANFALGGITNAMVELLEEGLVDKIL-------DVQDFDHPS---AVSLDRNAEKHYEIDAN  352 (519)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECSEECHHHHHHHHTTSEEEEE-------ESEESSHHH---HHHHHHTTTTEEECCHH
T ss_pred             HHHHHHHHHhhhcccceeeeceeccCcChhHHHHHHCCCCCCCc-------cccccccch---HHHHHhCcHhhEEEchH
Confidence            899999999999 999999998    999999999999999642       378999999   99999999  9999999


Q ss_pred             ce---eccHHHHHhcCCceEeccceEeeecccccccC-CCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccC----
Q psy2324          75 TY---SNDPAIIRQNHRMTAINTCLEIDITGQVVSDS-LGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDN----  146 (170)
Q Consensus        75 ~~---tN~P~~Iar~~~~vsINsaleVDL~GQvnse~-iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~----  146 (170)
                      +|   +|+|++|+++|  ++||+|+|||++||||+++ +|+++++|+|||.||++||++       +|++||||..    
T Consensus       353 ~~~n~~n~p~~i~~ld--v~ilga~eVD~~Gnvn~~~~~gg~~~~G~GG~~D~~~gA~~-------~ii~~~~t~g~~sk  423 (519)
T 2hj0_A          353 MYASPLSKGSVINQLD--ICVLSALEVDTNFNVNVMTGSDGVIRGASGGHCDTAFAAKM-------SLVISPLVRGRIPT  423 (519)
T ss_dssp             HHHCSSSSCCGGGGCS--EEEECCSEECTTCCEECSBCTTCCBCCBCTTHHHHHHHSSE-------EEEECCSEETTEES
T ss_pred             HhhccCCCHHHhccCC--eeeeeeEEEccCCceeeeeccCCeEecccccHHHHhhccCe-------EEEEEcccCCCCCe
Confidence            99   89999999998  9999999999999999999 899999999999999999985       5999999963    


Q ss_pred             CCCCCC---CCCCCCceEEeeeeecc
Q psy2324         147 SMPLLG---SNPGPPDYQASAWKIGL  169 (170)
Q Consensus       147 ~~~~l~---s~~~~~~~~~te~gia~  169 (170)
                      ..|.+.   +.-+.+||||||||||+
T Consensus       424 iV~~~~~vtt~~~~V~~VVTE~Gva~  449 (519)
T 2hj0_A          424 FVDKVNTVITPGTSVDVVVTEVGIAI  449 (519)
T ss_dssp             BCSSCSSCSBCGGGCCEEECSSCEEE
T ss_pred             eccCCCCcccCCCCCCEEECCCEEEE
Confidence            244443   33349999999999997

>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A

Probab=99.85  E-value=5.6e-23  Score=186.99  Aligned_cols=141  Identities=13%  Similarity=0.155  Sum_probs=112.3

Q ss_pred             CchHHHHHhcccCCCceEEecccchHHHHHHHcCCccccccccCCCceEEEee-----cCchHHHHhcccCCceeeeccc
Q psy2324           1 KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLL-----LGDKPLYDFVHNNELVQMKRGT   75 (170)
Q Consensus         1 ~ipnAV~~~L~~~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa-----~Gs~~LY~~~d~np~v~~~p~~   75 (170)
                      +||++|...|.++++|++|||.-..++..+-..|.++.  +.++.||.+.++.     +++.+.|+|++..         
T Consensus       285 GiP~~v~~~~~~~~~l~l~~E~G~~g~~p~~~~~~~d~--~~in~Gk~~~t~~~g~~~~~~~~~F~~~~gG---------  353 (481)
T 3k6m_A          285 GIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDA--DLINAGKETVTVLPGASYFSSDESFAMIRGG---------  353 (481)
T ss_dssp             THHHHHGGGCCTTSCEEEEETTTEEEECCCCCGGGCCT--TCBCTTSBBCCEEEEEEECCHHHHHHHHHTT---------
T ss_pred             CHHHHHHhhhccCCcEEEEECCcEeCCccCCCCCccCc--ccccCCCceEeccccceecCCHHHeeeecCC---------
Confidence            58999999999999999999966666655555554432  3466787655444     5599999998873         


Q ss_pred             eeccHHHHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC-----CCC
Q psy2324          76 YSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS-----MPL  150 (170)
Q Consensus        76 ~tN~P~~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~-----~~~  150 (170)
                               ++|  ++||+|+|||++||||++++++++++|+||+.||++||+      +|+|++|+||+++     .|.
T Consensus       354 ---------~~D--v~ilga~qVD~~Gnvn~~~~pg~~~~G~GG~~D~~~ga~------~k~ii~~~~t~k~g~~~Iv~~  416 (481)
T 3k6m_A          354 ---------HVN--LTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSAK------TKVVVTMEHSAKGNAHKIMEK  416 (481)
T ss_dssp             ---------CCS--EEEECCSEEETTCCEECSCBTTTBCSCCTTHHHHTCCTT------SEEEEECCSBCGGGCBSEESS
T ss_pred             ---------CeE--EEEechHhccCCCCccccccCCceeecCCcchhhhccCC------ceEEEEEeeEcCCCceEEecc
Confidence                     222  999999999999999999999999999999999999986      7889999999873     233


Q ss_pred             CC---CCCCCCceEEeeeeecc
Q psy2324         151 LG---SNPGPPDYQASAWKIGL  169 (170)
Q Consensus       151 l~---s~~~~~~~~~te~gia~  169 (170)
                      ++   ++.+.+|+|||||||++
T Consensus       417 ~~~~~t~~~~v~~vVTE~gV~~  438 (481)
T 3k6m_A          417 CTLPLTGKQCVNRIITEKAVFD  438 (481)
T ss_dssp             CSSCCSBSSCCCEEECSSEEEE
T ss_pred             cccCCCCCCcceEEEcCcEEEE
Confidence            22   33458899999999976

>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*

Probab=99.82  E-value=3.6e-22  Score=183.01  Aligned_cols=132  Identities=14%  Similarity=0.077  Sum_probs=101.7

Q ss_pred             CchHHHHHhccc-C--CCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeecccee
Q psy2324           1 KIPEAILSNIKH-Q--INLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYS   77 (170)
Q Consensus         1 ~ipnAV~~~L~~-~--kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~~t   77 (170)
                      +||+||+..|.+ .  ++|++|||+           |.+....+   .|.. .+++.++   |+|++.|+.+.+++..++
T Consensus       310 GiP~av~~~l~~~~~~~~l~~~~E~-----------G~~g~~~~---~g~~-~g~~~~~---~~~~~~~~~f~~~~~g~v  371 (531)
T 2ahu_A          310 GIADGIGLVAREEGCADDFILTVET-----------GPIGGITS---QGIA-FGANVNT---RAILDMTSQFDFYHGGGL  371 (531)
T ss_dssp             STTTTHHHHHHHHTCGGGSEEBCTT-----------SEESCBCC---------CCCBSC---SEECCHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHhcCCCCCeEEEEcc-----------ceecCccC---CCcc-ceeEECH---HHhcchhhhhheecCCCe
Confidence            489999999987 3  599999996           44433221   1222 2345554   899999999988887666


Q ss_pred             ccHHHHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC----------
Q psy2324          78 NDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS----------  147 (170)
Q Consensus        78 N~P~~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~----------  147 (170)
                      +           +|||+|+|||++||||++++|.+ ++|+|||.||++||       +|+|++++||+++          
T Consensus       372 d-----------vailga~eVD~~Gnvn~~~~G~~-~~G~GG~~D~~~gA-------~~~i~~~~~t~~g~~~~~~~g~l  432 (531)
T 2ahu_A          372 D-----------VCYLSFAEVDQHGNVGVHKFNGK-IMGTGGFIDISATS-------KKIIFCGTLTAGSLKTEIADGKL  432 (531)
T ss_dssp             S-----------EEEEECSEEETTSCEECSEETTE-ECBCTTHHHHHTTC-------SEEEEECCSEESSCEEEECSSCE
T ss_pred             E-----------EEEeChHHhCCCCcchhhccCCc-eecCCcchhhhcCC-------CeEEEEeccccCCceeeecCCeE
Confidence            5           99999999999999999999876 89999999999998       4679999999873          


Q ss_pred             -----------CCCCC----CCC-----CCCceEEeeeeecc
Q psy2324         148 -----------MPLLG----SNP-----GPPDYQASAWKIGL  169 (170)
Q Consensus       148 -----------~~~l~----s~~-----~~~~~~~te~gia~  169 (170)
                                 .|.+.    ++.     +.+++||||+||++
T Consensus       433 ~i~~eg~~~kiV~~v~~v~~~G~~~~~~~~v~~vVTE~gV~~  474 (531)
T 2ahu_A          433 NIVQEGRVKKFIRELPEITFSGKIALERGLDVRYITERAVFT  474 (531)
T ss_dssp             EEEECCSEESEESCCSSCSBCHHHHHHTTCEEEEECSSEEEE
T ss_pred             EEeccCCCceECCCCccCCCCCcccccCCCcEEEECCCEEEE
Confidence                       22222    232     68899999999986

>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3

Probab=99.82  E-value=3.9e-21  Score=162.72  Aligned_cols=135  Identities=20%  Similarity=0.190  Sum_probs=108.7

Q ss_pred             CchHHHHHhccc--CCCceEEecccchHHHHHHHcCCccccccc-----cCCCceE-EEeecCchHHHHhcccCCceeee
Q psy2324           1 KIPEAILSNIKH--QINLGVHTELLTPGVIKLFNSGVINNSKKS-----IDRGQIT-ATLLLGDKPLYDFVHNNELVQMK   72 (170)
Q Consensus         1 ~ipnAV~~~L~~--~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~-----~~~g~~v-~~fa~Gs~~LY~~~d~np~v~~~   72 (170)
                      +||++++..|++  +++|++|||           +|++++..|.     .+++.+. +.+.+|++++|+|+.+       
T Consensus        30 GiP~~va~~~~~~~~~~l~l~~E-----------~G~lg~~p~~~~~~~~d~~~~~~a~~~~~~~~~fd~~~~-------   91 (260)
T 1poi_B           30 GLPLIGASVAKRVYAPDCHIIVE-----------SGLMDCSPVEVPRSVGDLRFMAHCGCIWPNVRFVGFEIN-------   91 (260)
T ss_dssp             SHHHHHHHHHHHTTCTTCEEEET-----------TTEEEECCSSCCSSTTCHHHHTSEEEECCHHHHHHHHHH-------
T ss_pred             CHHHHHHHHHHHhcCCCEEEEEe-----------CceecCcccCcccCccCCCcEeehhhhcCHHHHhcccch-------
Confidence            489999999987  899999996           6999988764     3445554 4489999999999844       


Q ss_pred             ccceeccHHHHHhcCCceEeccceEeeecccccccCCCC-----eeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccC-
Q psy2324          73 RGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGT-----RIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDN-  146 (170)
Q Consensus        73 p~~~tN~P~~Iar~~~~vsINsaleVDL~GQvnse~iG~-----r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~-  146 (170)
                              ..+.+.+..++||+|+|||++||+|++.+|.     ++++|+||+.||++||.       ++|++ +++.+ 
T Consensus        92 --------~~~~~g~~Dv~ilGa~qVD~~Gnvn~s~iG~~~~p~~~~~G~GGa~D~~~~A~-------~~iv~-~h~~rk  155 (260)
T 1poi_B           92 --------EYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANGIATYSN-------TIIMM-QHEKRR  155 (260)
T ss_dssp             --------HHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHHHHHHSC-------EEEEC-CCCTTT
T ss_pred             --------hhhhcCCccEEEeChHHhCCCCCccccccCCcCCCceEeecccchHHHHhCCC-------EEEEE-ECCCCe
Confidence                    2556677789999999999999999999987     89999999999999994       66999 77654 


Q ss_pred             CCCCCC----CC----------C----C-CCceEEeeeeecc
Q psy2324         147 SMPLLG----SN----------P----G-PPDYQASAWKIGL  169 (170)
Q Consensus       147 ~~~~l~----s~----------~----~-~~~~~~te~gia~  169 (170)
                      -.|.+.    ++          .    + -+|+||||+||++
T Consensus       156 ~V~~v~~vt~~G~~~~~~~r~~~~~t~~r~~~~vVTe~gV~~  197 (260)
T 1poi_B          156 FMNKIDYVTSPGWIDGPGGRERLGLPGDVGPQLVVTDKGILK  197 (260)
T ss_dssp             BCSSCSCCSBCCSTTSTTHHHHTTCCTTCCEEEEEETTEEEE
T ss_pred             ecccCceeeccCcccccccccccccccCCCCCEEEeCceEEE
Confidence            344444    22          1    1 4599999999985

>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B

Probab=99.78  E-value=1e-20  Score=155.71  Aligned_cols=139  Identities=17%  Similarity=0.246  Sum_probs=96.6

Q ss_pred             CchHHHHHhcccCCCceEEecccchHHHHHHHcCCccccccccCCCceEEEe-----ecCchHHHHhcccCCceeeeccc
Q psy2324           1 KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATL-----LLGDKPLYDFVHNNELVQMKRGT   75 (170)
Q Consensus         1 ~ipnAV~~~L~~~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~f-----a~Gs~~LY~~~d~np~v~~~p~~   75 (170)
                      +||++|...|. .+++.+|||--.-++..+-..|..+  .+-++.|+...++     .+.+.+.|+|++.          
T Consensus        24 GiP~~va~~~~-~~~v~l~~E~G~~g~~p~p~~~~~d--~~~in~G~~~~t~~~~~~~~~~~~~F~~~~g----------   90 (207)
T 3rrl_B           24 GLPTLVANEVS-GMNIVFQSENGLLGIGAYPLEGSVD--ADLINAGKETITVVPGASFFNSADSFAMIRG----------   90 (207)
T ss_dssp             TGGGGGGGGGS-SSCCEEEETTTEEEECCCCCTTCCC--TTCBCTTSBBCCEEEEEEECCHHHHHHHHHT----------
T ss_pred             ChHHHHHHhcc-CCcEEEEeccceecCcCCCCccccC--HhHeecCCceeeecCCceeeCCHHHHHHHhC----------
Confidence            58999999999 8899999995433322222222211  1223444442222     2334444443332          


Q ss_pred             eeccHHHHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC-C----CC
Q psy2324          76 YSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS-M----PL  150 (170)
Q Consensus        76 ~tN~P~~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~-~----~~  150 (170)
                                -.--++||+|+|||++||+|++++++++++|+||+.||++||       +|+|++++||+++ +    |.
T Consensus        91 ----------G~~Dvailga~qVD~~Gnvn~~~~~~~~~~G~GGa~d~~~~A-------~~vi~~~~~t~k~G~~kiv~~  153 (207)
T 3rrl_B           91 ----------GHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAMDLVHGA-------KKVIVIMEHCNKYGESKVKKE  153 (207)
T ss_dssp             ----------TCCSEEEECCSEEETTSCEECSEETTTEECCCTTHHHHHHHS-------SEEEEECCSBCTTSCBSEESS
T ss_pred             ----------CCeeEEEECHHHHCcCCCccccccCCeeecCcccHHHHHhCC-------CEEEEEEeeecCCCcceECcc
Confidence                      211389999999999999999999999999999999999998       5789999999873 2    33


Q ss_pred             CC---CCCCCCceEEeeeeecc
Q psy2324         151 LG---SNPGPPDYQASAWKIGL  169 (170)
Q Consensus       151 l~---s~~~~~~~~~te~gia~  169 (170)
                      +.   ++.+.+|+|||||||.+
T Consensus       154 ~~~~~t~~~~v~~vVTe~gV~~  175 (207)
T 3rrl_B          154 CSLPLTGKGVVHQLITDLAVFE  175 (207)
T ss_dssp             CSSCCSBSSCCSEEECSSEEEE
T ss_pred             ccccCCCCCceEEEECCceEEE
Confidence            22   34457899999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d2g39a2	274	c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445	1e-28
d1xr4a2	269	c.124.1.2 (A:237-505) Putative citrate lyase alpha	5e-26
d1ooya1	221	c.124.1.3 (A:261-481) Succinate:CoA transferase, C	3e-13

>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  104 bits (261), Expect = 1e-28
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 1   KIPEAILSNI--KHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKP 58
            I  A++  +      NL +++E+L      L ++G +         G         +  
Sbjct: 43  SIANAVMCGLIESPFENLTMYSEVLQDSTFDLIDAGKLRF-----ASGSSITLSPRRNAD 97

Query: 59  LYDFVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGF 117
           ++  +   +   + R    ++   + +   +  INT LE DI G V S  + GT++ +G 
Sbjct: 98  VFGNLERYKDKLVLRPQEISNHPEVVRRLGIIGINTALEFDIYGNVNSTHVGGTKMMNGI 157

Query: 118 GGQVDFMRGA 127
           GG  DF R A
Sbjct: 158 GGSGDFARNA 167

>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Length = 269

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Putative citrate lyase alpha chain, citF2
species: Salmonella typhimurium [TaxId: 90371]

 Score = 98.0 bits (244), Expect = 5e-26
 Identities = 19/133 (14%), Positives = 36/133 (27%), Gaps = 16/133 (12%)

Query: 2   IPEAILSNIK-HQINLGVHTE----LLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGD 56
              A+   ++       +        +T  ++ L   G+I              T     
Sbjct: 41  ASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKALLD---------TQSFDG 91

Query: 57  KPLYDFVHNNELVQMKRGTYSNDP-AIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIY 114
                   N   +++    Y+N              + + LEID+   V   +     + 
Sbjct: 92  DAARSLAQNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLR 151

Query: 115 SGFGGQVDFMRGA 127
              GG  D   GA
Sbjct: 152 GASGGHSDTAAGA 164

>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 221

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Succinate:CoA transferase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 62.8 bits (152), Expect = 3e-13
 Identities = 17/126 (13%), Positives = 40/126 (31%), Gaps = 17/126 (13%)

Query: 2   IPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYD 61
           IP    + I   + + + +E           +G++      +        +  G     +
Sbjct: 26  IPLLASNFISPNMTVHLQSE-----------NGILGLGPYPLQNEVDADLINAG----KE 70

Query: 62  FVHNNELVQMKRGTYSNDPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQV 121
            V                 A+IR  H    +   +++   G + +  +  ++  G GG +
Sbjct: 71  TVTVLPGASYFSSD--ESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAM 128

Query: 122 DFMRGA 127
           D +  A
Sbjct: 129 DLVSSA 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d2g39a2	274	Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin	100.0
d1xr4a2	269	Putative citrate lyase alpha chain, citF2 {Salmone	100.0
d1ooya1	221	Succinate:CoA transferase, C-terminal domain {Pig	99.86
d2ahua1	247	Putative enzyme YdiF C-terminal domain {Escherichi	99.49
d1poib_	260	Glutaconate:CoA transferase beta {Acidaminococcus	96.23

>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=7.7e-50  Score=340.03  Aligned_cols=157  Identities=22%  Similarity=0.365  Sum_probs=137.1

Q ss_pred             CchHHHHHhcccC--CCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccC-Cceeeecccee
Q psy2324           1 KIPEAILSNIKHQ--INLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNN-ELVQMKRGTYS   77 (170)
Q Consensus         1 ~ipnAV~~~L~~~--kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~n-p~v~~~p~~~t   77 (170)
                      +|||||+..|.++  ||||+|||||+|++++|+|+|+++++.     |++++.++.|+.+||+|+++| +.+.++|.+|+
T Consensus        43 ~ip~AV~~~L~~~~~kdLgihtemitdg~~~L~e~G~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (274)
T d2g39a2          43 SIANAVMCGLIESPFENLTMYSEVLQDSTFDLIDAGKLRFAS-----GSSITLSPRRNADVFGNLERYKDKLVLRPQEIS  117 (274)
T ss_dssp             HHHHHHHHGGGSSSCCSEEEECSEECHHHHHHHHTTCEEEEE-----ESEECCCHHHHHHHHHSGGGTGGGEEECBHHHH
T ss_pred             HHHHHHHHHHhhCCCcCceEEEccccHHHHHHHHCCCeeccC-----CCeEEecchHHHHHHhhHHhcCcceeccccccc
Confidence            3899999999765  999999999999999999999999975     467888899999999999984 66778899999


Q ss_pred             ccHHHHHhcCCceEeccceEeeecccccccCC-CCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCC------CCC
Q psy2324          78 NDPAIIRQNHRMTAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNS------MPL  150 (170)
Q Consensus        78 N~P~~Iar~~~~vsINsaleVDL~GQvnse~i-G~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~------~~~  150 (170)
                      |+|.+++ +++|+|||+|+||||+||||+|++ |+|++||+|||.||+|||++       |||+||||+++      .|.
T Consensus       118 n~~~i~~-~~~~vaINsAlEVDL~Gqvnse~i~G~r~~sG~GGq~DF~rGA~~-------sIial~st~k~g~iS~IVp~  189 (274)
T d2g39a2         118 NHPEVVR-RLGIIGINTALEFDIYGNVNSTHVGGTKMMNGIGGSGDFARNAHL-------AIFVTKSIAKGGNISSVVPM  189 (274)
T ss_dssp             TCHHHHH-HHTCEEEEECSEEETTSCEESSEETTTEECSCCTTHHHHHHHCSE-------EEEECCSEEGGGTEESEESS
T ss_pred             CCHHHHh-cCCcEEEehhhecccCCcEEEeecCCcceecCCcchHHHHhcCCe-------EEEEeecccCCCCcCcEeCC
Confidence            9998775 569999999999999999999998 88999999999999999864       69999999874      344


Q ss_pred             CC--CCC-CCCceEEeeeeeccC
Q psy2324         151 LG--SNP-GPPDYQASAWKIGLI  170 (170)
Q Consensus       151 l~--s~~-~~~~~~~te~gia~~  170 (170)
                      +.  +.. ..+||||||||||++
T Consensus       190 ~t~vttpr~dVd~VVTEyGiA~L  212 (274)
T d2g39a2         190 VSHVDHTEHDVDILVTEQGLADL  212 (274)
T ss_dssp             CSSCSBCGGGCCEEEETTEEEEC
T ss_pred             CCCccCCCceeeEEEeCceEEEe
Confidence            43  222 389999999999974

>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Putative citrate lyase alpha chain, citF2
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.9e-42  Score=293.19  Aligned_cols=151  Identities=15%  Similarity=0.168  Sum_probs=134.1

Q ss_pred             chHHHHHhcccC-CCceEEecc----cchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccce
Q psy2324           2 IPEAILSNIKHQ-INLGVHTEL----LTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTY   76 (170)
Q Consensus         2 ipnAV~~~L~~~-kdLgvhTEm----~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~~   76 (170)
                      |||||+.+|+++ +|||+||||    ++|++++|+++|++++..|         +++++++.+|+|.|+||.++|+|++|
T Consensus        41 ip~AV~~~L~~~~~dlgih~e~~~ggitd~~~~L~~~G~i~~~~~---------~~~~~~~~~~~~~~~~~~i~~~p~~y  111 (269)
T d1xr4a2          41 ASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKALLD---------TQSFDGDAARSLAQNPHHIEISTNQY  111 (269)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEEEECHHHHHHHHTTSBSCEEE---------EEECSHHHHHHHHHCTTEEECCHHHH
T ss_pred             HHHHHHHHhHhhccccceEEEEEecccCcchhhcccccceeeccc---------ceeecchhHHHHHhCCCcEEEecccc
Confidence            899999999988 999999999    8999999999999998764         57899999999999999999999999


Q ss_pred             eccHHHHHhcCCc-eEeccceEeeecccccccCC-CCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCCC----CC
Q psy2324          77 SNDPAIIRQNHRM-TAINTCLEIDITGQVVSDSL-GTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSM----PL  150 (170)
Q Consensus        77 tN~P~~Iar~~~~-vsINsaleVDL~GQvnse~i-G~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~~----~~  150 (170)
                      +|+|..|+|+++| ++||+|+||||+||||++++ +++++||+|||.||+|||++|       |+++|++....    |.
T Consensus       112 ~n~~~~i~~~~~ldvsInsAlEVDl~Gnvn~~~~~~g~~~sG~GG~~Df~rGA~~s-------i~~~~~~~~~~s~iv~~  184 (269)
T d1xr4a2         112 ANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGGHSDTAAGADLT-------IITAPLVRGRIPCVVEK  184 (269)
T ss_dssp             TCTTCSCCGGGGCSEEEECCSEECTTCCEECSBCTTSCBCSBCTTHHHHHHHSSEE-------EEECCSEETTEESBCSS
T ss_pred             cCchhhhhhcCCccEEEeeeeeeccCCceEEEEecCCcccCCCccHHHHhcCceeE-------EEeeccccCCCCeEccC
Confidence            9999999999998 99999999999999999997 789999999999999999887       55666665432    22


Q ss_pred             CC--CCC-CCCceEEeeeeec
Q psy2324         151 LG--SNP-GPPDYQASAWKIG  168 (170)
Q Consensus       151 l~--s~~-~~~~~~~te~gia  168 (170)
                      +.  ..+ ..+|++|||+|+|
T Consensus       185 ~t~~~t~~~~vdviVTE~G~a  205 (269)
T d1xr4a2         185 VLTTVTPGASVDVLVTDHGIA  205 (269)
T ss_dssp             CSSCSBCGGGCCEEEETTEEE
T ss_pred             CccccCCCcceeEEEccCceE
Confidence            22  222 4889999999987

>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Succinate:CoA transferase, C-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.86  E-value=2.1e-23  Score=168.38  Aligned_cols=146  Identities=12%  Similarity=0.047  Sum_probs=116.4

Q ss_pred             CchHHHHHhcccCCCceEEecccchHHHHHHHcCCccccccccCCCceEEEeecCchHHHHhcccCCceeeeccceeccH
Q psy2324           1 KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQITATLLLGDKPLYDFVHNNELVQMKRGTYSNDP   80 (170)
Q Consensus         1 ~ipnAV~~~L~~~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v~~fa~Gs~~LY~~~d~np~v~~~p~~~tN~P   80 (170)
                      +||++++..|++++++++|||+           |.+....+.    +....+..+....|+|+.++|..  .+.++++.+
T Consensus        25 GiP~~va~~l~~~~~~~l~~E~-----------g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   87 (221)
T d1ooya1          25 GIPLLASNFISPNMTVHLQSEN-----------GILGLGPYP----LQNEVDADLINAGKETVTVLPGA--SYFSSDESF   87 (221)
T ss_dssp             THHHHHGGGSCTTSCEEEEETT-----------TEEEECCCC----CGGGCCTTCBCTTSCBCCEEEEE--EECCHHHHH
T ss_pred             CHHHHHHHHhhhcCcceEEecC-----------ceeeccccc----ccccccccccchhhhhccccchh--hhcccccch
Confidence            5899999999999999999996           444443322    33345677788889999998864  556899999


Q ss_pred             HHHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhCCCCCCcEEEEeeeccCCC--------CCCC
Q psy2324          81 AIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTGLDGKGLKYQILVHEDNSM--------PLLG  152 (170)
Q Consensus        81 ~~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S~gg~G~sIial~St~~~~--------~~l~  152 (170)
                      ..+++...+++||+++|||++||||++.+++++++|+||+.||+++|    .  .+.|++++++.+..        +...
T Consensus        88 ~~~~~g~~dva~~ga~qvD~~G~in~~~~p~~~~~G~GG~~d~~~~a----~--~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (221)
T d1ooya1          88 AMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMDLVSSA----K--TKVVVTMEHSAKGNAHKIMEKCTLPL  161 (221)
T ss_dssp             HHHHTTCSSEEEECCSEEETTCCEECSCCSSSCCCCCTTHHHHTCCT----T--SEEEEECCSBCGGGCBSEESSCSSCC
T ss_pred             hhhhcCCcceEEechhhhcchheeeeeecCCccccCcccchhhhhcc----C--ceEEEEeeccccCCCcccceEecccc
Confidence            99999999999999999999999999999999999999999998766    2  56677777777631        1111


Q ss_pred             CCCCCCceEEeeeeecc
Q psy2324         153 SNPGPPDYQASAWKIGL  169 (170)
Q Consensus       153 s~~~~~~~~~te~gia~  169 (170)
                      ...+.+++||||+||.+
T Consensus       162 ~~~~~~~~vVTe~gv~~  178 (221)
T d1ooya1         162 TGKQCVNRIITEKAVFD  178 (221)
T ss_dssp             SBSSCCCEEECSSEEEE
T ss_pred             cCcccceEEecccEEEE
Confidence            22247889999999975

>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Putative enzyme YdiF C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.5e-15  Score=125.38  Aligned_cols=101  Identities=15%  Similarity=0.092  Sum_probs=66.0

Q ss_pred             CchHHHHHhcccCCCceEEecccchHHHHHHHcCCccccccccCCCceE--EEeecCchHHHHhcccCCceeeeccceec
Q psy2324           1 KIPEAILSNIKHQINLGVHTELLTPGVIKLFNSGVINNSKKSIDRGQIT--ATLLLGDKPLYDFVHNNELVQMKRGTYSN   78 (170)
Q Consensus         1 ~ipnAV~~~L~~~kdLgvhTEm~~D~~~~L~~~G~vt~~~k~~~~g~~v--~~fa~Gs~~LY~~~d~np~v~~~p~~~tN   78 (170)
                      +||+++...++        .|...|.++-+.|+|++.+..+........  ....+.+.+.|                  
T Consensus        28 GiP~~v~~~a~--------~~~~~~~v~~~~E~G~~gg~~~~~~~~~~~~~~~~~~~~~~~f------------------   81 (247)
T d2ahua1          28 GIADGIGLVAR--------EEGCADDFILTVETGPIGGITSQGIAFGANVNTRAILDMTSQF------------------   81 (247)
T ss_dssp             STTTTHHHHHH--------HHTCGGGSEEBCTTSEESCBCC-----CCCBSCSEECCHHHHH------------------
T ss_pred             cHHHHHHHHHH--------hcCCCCceeEeecCcccCCcccccccceeeecceeEeccccee------------------
Confidence            46777665553        244566666667888887655432111110  01112222222                  


Q ss_pred             cHHHHHhcCCceEeccceEeeecccccccCCCCeeeeccCchHHHHHHHhhC
Q psy2324          79 DPAIIRQNHRMTAINTCLEIDITGQVVSDSLGTRIYSGFGGQVDFMRGALTG  130 (170)
Q Consensus        79 ~P~~Iar~~~~vsINsaleVDL~GQvnse~iG~r~~sG~GGq~DF~rgA~~S  130 (170)
                        ..+++....++||+++|||++||+|++.+|++ ++|+||+.||+++|..+
T Consensus        82 --~~~~~g~~dv~~lga~QVD~~GnvN~s~iG~~-~~G~GG~~D~~~gA~~~  130 (247)
T d2ahua1          82 --DFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGK-IMGTGGFIDISATSKKI  130 (247)
T ss_dssp             --HHHHTTCCSEEEEECSEEETTSCEECSEETTE-ECBCTTHHHHHTTCSEE
T ss_pred             --eeEecCCeeEEEechhhcCcccccchhccCCc-ccCccccchhhcCcceE
Confidence              44555566799999999999999999999986 68999999999998644

>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Glutaconate:CoA transferase beta
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.23  E-value=0.0013  Score=53.24  Aligned_cols=46  Identities=26%  Similarity=0.381  Sum_probs=37.8

Q ss_pred             HHHhcCCceEeccceEeeecccccccCCCC-----eeeeccCchHHHHHHH
Q psy2324          82 IIRQNHRMTAINTCLEIDITGQVVSDSLGT-----RIYSGFGGQVDFMRGA  127 (170)
Q Consensus        82 ~Iar~~~~vsINsaleVDL~GQvnse~iG~-----r~~sG~GGq~DF~rgA  127 (170)
                      .+++-..=+++-++.|||=+|++|+..+|.     ..+.|+||..|.+.+|
T Consensus        93 ~~~~G~~d~~fLG~~QVD~~GNvN~s~iG~~~~p~~rl~G~GGa~di~~~a  143 (260)
T d1poib_          93 YLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANGIATYS  143 (260)
T ss_dssp             HHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHHHHHHS
T ss_pred             HHhcCCcceEEecccccCcccceeecccccccCCCccccCCCccchhhhcC
Confidence            455554458899999999999999999874     5689999999987554